Your job contains 1 sequence.
>006974
MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLL
SPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCI
DCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCV
GIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAE
IAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLL
LGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPN
TGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS
RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLK
DKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRP
ERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYREDSTSASISVYRYQFAVTST
LSKVDFDAIPNIDQCKDKGIHLA
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 006974
(623 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|BA_4794 - symbol:BA_4794 "MutS2 family protein" ... 454 4.6e-61 2
UNIPROTKB|Q3ABU1 - symbol:mutS2 "MutS2 protein" species:2... 460 6.1e-61 2
TIGR_CMR|CHY_1564 - symbol:CHY_1564 "DNA mismatch repair ... 460 6.1e-61 2
UNIPROTKB|Q720J7 - symbol:mutS2 "MutS2 protein" species:2... 459 8.7e-59 2
UNIPROTKB|Q81YJ6 - symbol:BAS3289 "Putative MutS family p... 407 3.8e-56 2
TIGR_CMR|BA_3547 - symbol:BA_3547 "MutS family protein, p... 407 3.8e-56 2
UNIPROTKB|Q76DY7 - symbol:mutS2 "MutS2 protein" species:2... 442 5.4e-55 2
TIGR_CMR|GSU_0547 - symbol:GSU_0547 "MutS2 family protein... 428 2.8e-49 2
UNIPROTKB|A8HMH7 - symbol:CHLREDRAFT_146712 "Predicted pr... 402 1.1e-47 2
UNIPROTKB|Q8TTB4 - symbol:mutS "DNA mismatch repair prote... 280 1.2e-21 2
UNIPROTKB|O66652 - symbol:mutS "DNA mismatch repair prote... 288 1.4e-21 2
CGD|CAL0001526 - symbol:MSH2 species:5476 "Candida albica... 284 1.9e-21 1
SGD|S000000688 - symbol:MSH3 "Mismatch repair protein" sp... 273 3.9e-20 1
UNIPROTKB|B1N4L6 - symbol:EHI_123830 "DNA mismatch repair... 267 7.2e-20 1
UNIPROTKB|P49849 - symbol:mutS "DNA mismatch repair prote... 263 3.6e-19 1
TIGR_CMR|CBU_1056 - symbol:CBU_1056 "DNA mismatch repair ... 267 8.1e-19 2
TIGR_CMR|CHY_1397 - symbol:CHY_1397 "DNA mismatch repair ... 268 9.3e-19 2
POMBASE|SPAC8F11.03 - symbol:msh3 "MutS protein homolog 3... 262 1.1e-18 2
RGD|1563954 - symbol:Msh3 "mutS homolog 3 (E. coli)" spec... 206 1.2e-18 2
UNIPROTKB|F1SQH4 - symbol:LOC100739713 "Uncharacterized p... 252 1.2e-18 1
CGD|CAL0000288 - symbol:orf19.3608 species:5476 "Candida ... 259 1.3e-18 1
UNIPROTKB|P74926 - symbol:mutS "DNA mismatch repair prote... 257 1.4e-18 1
UNIPROTKB|F1SQH6 - symbol:LOC100739713 "Uncharacterized p... 252 2.7e-18 1
UNIPROTKB|A6V1G8 - symbol:mutS "DNA mismatch repair prote... 253 4.5e-18 1
UNIPROTKB|Q3KKQ0 - symbol:mutS "DNA mismatch repair prote... 251 6.9e-18 1
TIGR_CMR|BA_3905 - symbol:BA_3905 "DNA mismatch repair pr... 249 1.3e-17 1
RGD|620786 - symbol:Msh2 "mutS homolog 2 (E. coli)" speci... 249 1.4e-17 1
UNIPROTKB|F1LXQ9 - symbol:Msh3 "Protein Msh3" species:101... 195 1.8e-17 2
ASPGD|ASPL0000012704 - symbol:AN3749 species:162425 "Emer... 249 1.8e-17 1
UNIPROTKB|Q5B6T1 - symbol:msh3 "DNA mismatch repair prote... 249 1.8e-17 1
UNIPROTKB|Q8A334 - symbol:mutS "DNA mismatch repair prote... 238 2.3e-17 2
UNIPROTKB|F1NV33 - symbol:MSH2 "Uncharacterized protein" ... 248 3.1e-17 2
UNIPROTKB|F1NFH4 - symbol:MSH2 "Uncharacterized protein" ... 248 3.2e-17 2
TIGR_CMR|SO_3431 - symbol:SO_3431 "DNA mismatch repair pr... 245 3.4e-17 1
UNIPROTKB|Q7RQK0 - symbol:PY01096 "MutS homolog 2-related... 251 4.7e-17 2
WB|WBGene00003418 - symbol:msh-2 species:6239 "Caenorhabd... 243 5.5e-17 1
UNIPROTKB|Q9TXR4 - symbol:msh-2 "Protein MSH-2" species:6... 243 5.5e-17 1
DICTYBASE|DDB_G0275809 - symbol:msh2 "mutS homolog" speci... 242 7.2e-17 2
UNIPROTKB|F1PM37 - symbol:MSH2 "Uncharacterized protein" ... 251 1.0e-16 2
UNIPROTKB|Q3MHE4 - symbol:MSH2 "DNA mismatch repair prote... 249 1.3e-16 2
MGI|MGI:101816 - symbol:Msh2 "mutS homolog 2 (E. coli)" s... 246 1.4e-16 2
UNIPROTKB|Q8F496 - symbol:mutS "DNA mismatch repair prote... 239 1.5e-16 1
UNIPROTKB|E9PHA6 - symbol:MSH2 "DNA mismatch repair prote... 249 2.0e-16 2
UNIPROTKB|P43246 - symbol:MSH2 "DNA mismatch repair prote... 249 2.1e-16 2
UNIPROTKB|Q759V4 - symbol:MSH3 "DNA mismatch repair prote... 250 2.2e-16 2
UNIPROTKB|Q7R8N0 - symbol:PY07191 "DNA mismatch repair pr... 231 3.1e-16 2
TIGR_CMR|DET_1219 - symbol:DET_1219 "DNA mismatch repair ... 236 3.3e-16 1
UNIPROTKB|F5H2F9 - symbol:MSH6 "DNA mismatch repair prote... 225 3.4e-16 2
SGD|S000005450 - symbol:MSH2 "Protein that forms heterodi... 236 3.9e-16 1
UNIPROTKB|E1B9Q4 - symbol:MSH6 "Uncharacterized protein" ... 224 4.1e-16 2
POMBASE|SPAC13F5.01c - symbol:msh1 "mitochondrial MutS pr... 212 4.6e-16 2
UNIPROTKB|B4DF41 - symbol:MSH6 "DNA mismatch repair prote... 225 5.0e-16 2
UNIPROTKB|P23909 - symbol:mutS species:83333 "Escherichia... 234 5.3e-16 1
UNIPROTKB|Q0JBW2 - symbol:Os04g0507000 "Os04g0507000 prot... 232 6.0e-16 2
UNIPROTKB|I3LHZ9 - symbol:LOC100739477 "Uncharacterized p... 225 6.2e-16 2
UNIPROTKB|P52701 - symbol:MSH6 "DNA mismatch repair prote... 225 6.5e-16 2
FB|FBgn0015546 - symbol:spel1 "spellchecker1" species:722... 240 9.7e-16 2
ZFIN|ZDB-GENE-040426-2932 - symbol:msh2 "mutS homolog 2 (... 235 1.6e-15 3
UNIPROTKB|P61667 - symbol:mutS "DNA mismatch repair prote... 237 2.2e-15 2
TIGR_CMR|GSU_1822 - symbol:GSU_1822 "DNA mismatch repair ... 237 2.2e-15 2
UNIPROTKB|F1PM27 - symbol:MSH6 "Uncharacterized protein" ... 220 2.4e-15 2
TIGR_CMR|NSE_0335 - symbol:NSE_0335 "DNA mismatch repair ... 231 2.5e-15 2
TIGR_CMR|ECH_0824 - symbol:ECH_0824 "DNA mismatch repair ... 228 3.2e-15 2
POMBASE|SPBC19G7.01c - symbol:msh2 "MutS protein homolog ... 236 3.3e-15 2
UNIPROTKB|O13396 - symbol:msh-2 "DNA mismatch repair prot... 226 4.6e-15 1
UNIPROTKB|J9P5H1 - symbol:MSH6 "Uncharacterized protein" ... 217 5.2e-15 2
TIGR_CMR|VC_0535 - symbol:VC_0535 "DNA mismatch repair pr... 231 1.6e-14 2
UNIPROTKB|A9WFZ9 - symbol:mutS "DNA mismatch repair prote... 225 1.9e-14 2
UNIPROTKB|Q752H0 - symbol:AFR603C "AFR603Cp" species:2848... 229 3.6e-14 2
MGI|MGI:109519 - symbol:Msh3 "mutS homolog 3 (E. coli)" s... 218 3.7e-14 2
DICTYBASE|DDB_G0268614 - symbol:msh6 "mutS homolog" speci... 225 5.0e-14 2
ZFIN|ZDB-GENE-020905-3 - symbol:msh6 "mutS homolog 6 (E. ... 218 5.7e-14 1
RGD|2322311 - symbol:Msh6 "mutS homolog 6 (E. coli)" spec... 228 7.5e-14 2
TAIR|locus:2087193 - symbol:MSH1 "AT3G24320" species:3702... 223 7.7e-14 2
FB|FBgn0036486 - symbol:Msh6 "Msh6" species:7227 "Drosoph... 215 1.0e-13 1
ASPGD|ASPL0000073909 - symbol:AN10621 species:162425 "Eme... 213 1.2e-13 1
UNIPROTKB|P20585 - symbol:MSH3 "DNA mismatch repair prote... 220 1.3e-13 3
POMBASE|SPCC285.16c - symbol:msh6 "MutS protein homolog" ... 219 1.4e-13 2
MGI|MGI:1860077 - symbol:Msh4 "mutS homolog 4 (E. coli)" ... 215 1.4e-13 2
MGI|MGI:1343961 - symbol:Msh6 "mutS homolog 6 (E. coli)" ... 226 1.4e-13 3
ASPGD|ASPL0000041666 - symbol:mshA species:162425 "Emeric... 219 1.5e-13 2
UNIPROTKB|Q5BCM2 - symbol:AN1708.2 "Protein required for ... 219 1.5e-13 2
WB|WBGene00001872 - symbol:him-14 species:6239 "Caenorhab... 211 1.7e-13 1
UNIPROTKB|Q23405 - symbol:him-14 "MutS protein homolog hi... 211 1.7e-13 1
CGD|CAL0006305 - symbol:MSH6 species:5476 "Candida albica... 213 1.7e-13 1
TIGR_CMR|CJE_1196 - symbol:CJE_1196 "DNA mismatch repair ... 209 1.8e-13 2
TAIR|locus:2131829 - symbol:MSH3 "AT4G25540" species:3702... 212 1.9e-13 1
DICTYBASE|DDB_G0275999 - symbol:msh1 "mutS homolog" speci... 210 2.6e-13 2
UNIPROTKB|Q74ZT2 - symbol:AGOS_AGR116W "AGR116Wp" species... 211 2.7e-13 1
DICTYBASE|DDB_G0281683 - symbol:msh3 "mutS homolog" speci... 212 2.7e-13 1
UNIPROTKB|E1C1F8 - symbol:MSH3 "Uncharacterized protein" ... 200 2.7e-13 2
UNIPROTKB|Q7NLT8 - symbol:mutS "DNA mismatch repair prote... 212 3.2e-13 2
UNIPROTKB|O15457 - symbol:MSH4 "MutS protein homolog 4" s... 211 3.7e-13 2
UNIPROTKB|F1LQM8 - symbol:Msh3 "Protein Msh3" species:101... 208 3.7e-13 2
UNIPROTKB|F1MLH1 - symbol:MSH3 "Uncharacterized protein" ... 211 4.6e-13 3
UNIPROTKB|F1P4E2 - symbol:MSH4 "Uncharacterized protein" ... 207 4.6e-13 1
UNIPROTKB|Q23K54 - symbol:TTHERM_00194810 "MutS domain II... 209 4.7e-13 1
UNIPROTKB|I3L5Z8 - symbol:MSH4 "Uncharacterized protein" ... 215 5.1e-13 2
UNIPROTKB|F1S9R2 - symbol:MSH4 "Uncharacterized protein" ... 215 5.6e-13 2
UNIPROTKB|F1P6X2 - symbol:MSH4 "Uncharacterized protein" ... 213 5.9e-13 2
WARNING: Descriptions of 72 database sequences were not reported due to the
limiting value of parameter V = 100.
>TIGR_CMR|BA_4794 [details] [associations]
symbol:BA_4794 "MutS2 family protein" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
HAMAP:MF_00092 InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF01713
INTERPRO:IPR002625 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003684 GO:GO:0006298 GO:GO:0030983
SMART:SM00463 PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334
HSSP:Q56215 RefSeq:NP_846997.1 RefSeq:YP_021440.1
RefSeq:YP_030694.1 ProteinModelPortal:Q81L40 IntAct:Q81L40
EnsemblBacteria:EBBACT00000011403 EnsemblBacteria:EBBACT00000013814
EnsemblBacteria:EBBACT00000023448 GeneID:1083920 GeneID:2815890
GeneID:2851606 KEGG:ban:BA_4794 KEGG:bar:GBAA_4794 KEGG:bat:BAS4447
eggNOG:COG1193 HOGENOM:HOG000135096 KO:K07456 OMA:HDQSSTG
ProtClustDB:PRK00409 BioCyc:BANT260799:GJAJ-4504-MONOMER
BioCyc:BANT261594:GJ7F-4656-MONOMER PANTHER:PTHR11361:SF14
TIGRFAMs:TIGR01069 Uniprot:Q81L40
Length = 786
Score = 454 (164.9 bits), Expect = 4.6e-61, Sum P(2) = 4.6e-61
Identities = 99/241 (41%), Positives = 143/241 (59%)
Query: 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
VP +I + + +VITGPNTGGKT ++KT+G+ LM+++GL++P + + F I A
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460
DIGD QS+EQ+LSTFS H+ IVDILE ESLVL DE+G+GTDP EG ALA SIL +
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 461 RDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKS 520
+R V TTHY +L + NA+ EF + TL PT+++L G G SNA I+K
Sbjct: 438 CNRGARVVATTHYPELKAYGYNREQVINASVEFDVNTLSPTHKLLIGVPGRSNAFEISKR 497
Query: 521 IGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYR 580
+G ++I +A+ + ++ + L E ++ E A +L + L+R
Sbjct: 498 LGLSNRVIDQARNHIST-----DTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR 552
Query: 581 E 581
E
Sbjct: 553 E 553
Score = 202 (76.2 bits), Expect = 4.6e-61, Sum P(2) = 4.6e-61
Identities = 76/277 (27%), Positives = 133/277 (48%)
Query: 15 KSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRA 74
+ + E Q ++ + + + S PL I DI + A G +LSP+E+ + T+
Sbjct: 41 EEIVEMQDTTDEAAKVIRLKGSAPL--GGITDIRSNVKRAKIGSMLSPNELLDIANTMYG 98
Query: 75 VNNVWKKLTEAAELDGDSLQRYSPLLEL-LKNCNFLTELEEKIGFCIDCKLLIILDRASE 133
N+ K+ E +G L P+LE + L +LE+KI CI ++ D AS+
Sbjct: 99 SRNM-KRFIEDMVDNGVEL----PILETHVAQIVSLYDLEKKITNCIGDGGEVV-DSASD 152
Query: 134 DLELIRAE----RKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYL 189
L IR + R E L+++ + AQ + I +T R R + +K ++ +
Sbjct: 153 KLRGIRTQIRTAESRIREKLENMTRSSNAQKMLSDSI----VTIRNERYVIPVKQEYRGV 208
Query: 190 LPDGIALNVSSSGATYFMEPKGAVEFNN--MEVRLSNSEIAEETAILSLLTAEIAKSERE 247
GI + S+SG T F+EP+ VE NN E R+ + E IL +LT E+A
Sbjct: 209 Y-GGIVHDQSASGQTLFIEPQVIVELNNALQEARVKEKQEIER--ILLMLTEEVAVEADI 265
Query: 248 IKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHV 284
+ ++ V +D FA+A +A+ + PI++++ ++
Sbjct: 266 VLSNVEVVANLDFIFAKAFYAKRIKATKPIVNNERYM 302
Score = 42 (19.8 bits), Expect = 5.6e-12, Sum P(2) = 5.6e-12
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 528 IQRAQKLVERLRPERQQHRKSELYQ----SLMEERRKLESQA 565
++ A+K E + E +Q RK++L L+E + +LE A
Sbjct: 580 VEAAKKEAEGIIQELRQLRKAQLANVKDHELIEAKSRLEGAA 621
Score = 42 (19.8 bits), Expect = 5.6e-12, Sum P(2) = 5.6e-12
Identities = 12/54 (22%), Positives = 25/54 (46%)
Query: 525 RKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDL 578
RK ++ + ++R E + R L ++ E K+E+ + A + E+ L
Sbjct: 544 RKQSEKLHRELQRQIIEFNEERDERLLKAQKEGEEKVEAAKKEAEGIIQELRQL 597
>UNIPROTKB|Q3ABU1 [details] [associations]
symbol:mutS2 "MutS2 protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
HAMAP:MF_00092 InterPro:IPR000432 InterPro:IPR003593
InterPro:IPR005747 InterPro:IPR007696 Pfam:PF00488
PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00382 SMART:SM00533
SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625 GO:GO:0005524
GO:GO:0003824 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003684
GO:GO:0006281 GO:GO:0006298 GO:GO:0017111 GO:GO:0030983
SMART:SM00463 PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334
HSSP:P23909 eggNOG:COG1193 HOGENOM:HOG000135096 KO:K07456
OMA:HDQSSTG PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:YP_360393.1 ProteinModelPortal:Q3ABU1 STRING:Q3ABU1
GeneID:3727187 KEGG:chy:CHY_1564 PATRIC:21276253
BioCyc:CHYD246194:GJCN-1563-MONOMER Uniprot:Q3ABU1
Length = 777
Score = 460 (167.0 bits), Expect = 6.1e-61, Sum P(2) = 6.1e-61
Identities = 105/268 (39%), Positives = 157/268 (58%)
Query: 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
VP D+ + E +++ITGPNTGGKT ++KT+G+ ++M++AGL++PA + F +
Sbjct: 311 VPFDLTLGKEFDLLIITGPNTGGKTVTLKTIGILTIMARAGLFIPASPETEIGLFGEVYV 370
Query: 401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460
DIGD QS+ Q+LSTFS H+ + ILE LVL+DE+G+GTDP EG ALA +IL+ L
Sbjct: 371 DIGDEQSIVQSLSTFSSHLLNLKFILENAREGDLVLLDELGTGTDPREGAALAKAILEEL 430
Query: 461 RDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKS 520
R + V TTH ++L+ + R ENA+ EF E+L+PTYR+ G G SNAL IA+
Sbjct: 431 RGKKVKVVATTHTSELAAYAIETERVENASVEFDPESLKPTYRLHIGKPGRSNALYIAQG 490
Query: 521 IGFDRKIIQRAQ-----------KLVERLRPERQQHRKSE-----LYQSLMEERRKLESQ 564
+G +II++A+ KL+ + E++Q K++ L SL E+ KL +
Sbjct: 491 LGLKEQIIEKAKSFLKEEELKLDKLIFDVEQEKRQLEKAKEEVANLLISLKEKEAKLNDE 550
Query: 565 ARTAASLHAEIMDLYREDSTSASISVYR 592
EI+ YRE + + R
Sbjct: 551 LENLEKTKEEIIRKYREKYQQKLLEIER 578
Score = 194 (73.4 bits), Expect = 6.1e-61, Sum P(2) = 6.1e-61
Identities = 77/274 (28%), Positives = 132/274 (48%)
Query: 15 KSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRA 74
K +EE KLL + L+ ++ + +DLS + D + I +L+ EI + + L+
Sbjct: 41 KIIEE--KLL-EVEEGLSYLRFKTVDLSVLSDFSEIFLKLSKESMLTGQEIYRLGQLLKV 97
Query: 75 VNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASED 134
+ + +++ A R +++LL L + E+ F + + D AS +
Sbjct: 98 SKDTFFEISRGA------FPRLKQIVKLLFFDEALVKDIER-SFWPEGT---VKDEASPE 147
Query: 135 LELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGI 194
L+ IR + R + + ++K + A + +PLI+ R R + +KAS+K +P GI
Sbjct: 148 LKRIRGQIARLKDKMREAVEKYLKEPELAKYLQEPLISVRGDRFVLPVKASYKSQVP-GI 206
Query: 195 ALNVSSSGATYFMEPKGAVEFNN--MEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLM 252
+ S++G T F+EP AVE N + L EI E+ IL T +A + EIK
Sbjct: 207 IHDRSNTGQTLFIEPYSAVEAGNELKTLELQEKEIIEK--ILKDFTQRLACNLTEIKRTY 264
Query: 253 DRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSF 286
+ + EIDL A+A A +D P +S +SF
Sbjct: 265 ELLGEIDLIVAKARLALELDAYKPRISENGVLSF 298
Score = 42 (19.8 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 528 IQRAQKLV-ERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYR 580
I+R KLV E ++ + + + + L + L E R+K + ++ A L E + YR
Sbjct: 576 IERKGKLVIEEIKEKIKTYEEKNLAKLLEEARQKTKEFSQNFA-LPFEPIKPYR 628
>TIGR_CMR|CHY_1564 [details] [associations]
symbol:CHY_1564 "DNA mismatch repair protein MutS"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] HAMAP:MF_00092 InterPro:IPR000432
InterPro:IPR003593 InterPro:IPR005747 InterPro:IPR007696
Pfam:PF00488 PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00382
SMART:SM00533 SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625
GO:GO:0005524 GO:GO:0003824 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0003684 GO:GO:0006281 GO:GO:0006298 GO:GO:0017111
GO:GO:0030983 SMART:SM00463 PROSITE:PS50828 GO:GO:0045005
SUPFAM:SSF48334 HSSP:P23909 eggNOG:COG1193 HOGENOM:HOG000135096
KO:K07456 OMA:HDQSSTG PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:YP_360393.1 ProteinModelPortal:Q3ABU1 STRING:Q3ABU1
GeneID:3727187 KEGG:chy:CHY_1564 PATRIC:21276253
BioCyc:CHYD246194:GJCN-1563-MONOMER Uniprot:Q3ABU1
Length = 777
Score = 460 (167.0 bits), Expect = 6.1e-61, Sum P(2) = 6.1e-61
Identities = 105/268 (39%), Positives = 157/268 (58%)
Query: 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
VP D+ + E +++ITGPNTGGKT ++KT+G+ ++M++AGL++PA + F +
Sbjct: 311 VPFDLTLGKEFDLLIITGPNTGGKTVTLKTIGILTIMARAGLFIPASPETEIGLFGEVYV 370
Query: 401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460
DIGD QS+ Q+LSTFS H+ + ILE LVL+DE+G+GTDP EG ALA +IL+ L
Sbjct: 371 DIGDEQSIVQSLSTFSSHLLNLKFILENAREGDLVLLDELGTGTDPREGAALAKAILEEL 430
Query: 461 RDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKS 520
R + V TTH ++L+ + R ENA+ EF E+L+PTYR+ G G SNAL IA+
Sbjct: 431 RGKKVKVVATTHTSELAAYAIETERVENASVEFDPESLKPTYRLHIGKPGRSNALYIAQG 490
Query: 521 IGFDRKIIQRAQ-----------KLVERLRPERQQHRKSE-----LYQSLMEERRKLESQ 564
+G +II++A+ KL+ + E++Q K++ L SL E+ KL +
Sbjct: 491 LGLKEQIIEKAKSFLKEEELKLDKLIFDVEQEKRQLEKAKEEVANLLISLKEKEAKLNDE 550
Query: 565 ARTAASLHAEIMDLYREDSTSASISVYR 592
EI+ YRE + + R
Sbjct: 551 LENLEKTKEEIIRKYREKYQQKLLEIER 578
Score = 194 (73.4 bits), Expect = 6.1e-61, Sum P(2) = 6.1e-61
Identities = 77/274 (28%), Positives = 132/274 (48%)
Query: 15 KSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRA 74
K +EE KLL + L+ ++ + +DLS + D + I +L+ EI + + L+
Sbjct: 41 KIIEE--KLL-EVEEGLSYLRFKTVDLSVLSDFSEIFLKLSKESMLTGQEIYRLGQLLKV 97
Query: 75 VNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASED 134
+ + +++ A R +++LL L + E+ F + + D AS +
Sbjct: 98 SKDTFFEISRGA------FPRLKQIVKLLFFDEALVKDIER-SFWPEGT---VKDEASPE 147
Query: 135 LELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGI 194
L+ IR + R + + ++K + A + +PLI+ R R + +KAS+K +P GI
Sbjct: 148 LKRIRGQIARLKDKMREAVEKYLKEPELAKYLQEPLISVRGDRFVLPVKASYKSQVP-GI 206
Query: 195 ALNVSSSGATYFMEPKGAVEFNN--MEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLM 252
+ S++G T F+EP AVE N + L EI E+ IL T +A + EIK
Sbjct: 207 IHDRSNTGQTLFIEPYSAVEAGNELKTLELQEKEIIEK--ILKDFTQRLACNLTEIKRTY 264
Query: 253 DRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSF 286
+ + EIDL A+A A +D P +S +SF
Sbjct: 265 ELLGEIDLIVAKARLALELDAYKPRISENGVLSF 298
Score = 42 (19.8 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 528 IQRAQKLV-ERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYR 580
I+R KLV E ++ + + + + L + L E R+K + ++ A L E + YR
Sbjct: 576 IERKGKLVIEEIKEKIKTYEEKNLAKLLEEARQKTKEFSQNFA-LPFEPIKPYR 628
>UNIPROTKB|Q720J7 [details] [associations]
symbol:mutS2 "MutS2 protein" species:265669 "Listeria
monocytogenes serotype 4b str. F2365" [GO:0003674
"molecular_function" evidence=ND] HAMAP:MF_00092 InterPro:IPR000432
InterPro:IPR005747 InterPro:IPR007696 Pfam:PF00488
PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
Pfam:PF01713 INTERPRO:IPR002625 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AE017262 GenomeReviews:AE017262_GR GO:GO:0030983
SMART:SM00463 PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334
eggNOG:COG1193 HOGENOM:HOG000135096 KO:K07456 OMA:HDQSSTG
ProtClustDB:PRK00409 PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:YP_013840.1 ProteinModelPortal:Q720J7 STRING:Q720J7
GeneID:2799326 KEGG:lmf:LMOf2365_1241 PATRIC:20323712
Uniprot:Q720J7
Length = 785
Score = 459 (166.6 bits), Expect = 8.7e-59, Sum P(2) = 8.7e-59
Identities = 102/244 (41%), Positives = 147/244 (60%)
Query: 344 DIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIG 403
DI + + +VITGPNTGGKT ++KTLGL +LM+++GL +PA+ + F+ + ADIG
Sbjct: 321 DIYLGEDFTTIVITGPNTGGKTITLKTLGLLTLMAQSGLQIPAQEDSTIAVFEHVFADIG 380
Query: 404 DHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR 463
D QS+EQ+LSTFS H++ IV IL V+++SL+L DE+G+GTDP EG ALA +IL +
Sbjct: 381 DEQSIEQSLSTFSSHMTNIVSILGNVNQKSLILYDELGAGTDPQEGAALAIAILDASHAK 440
Query: 464 VGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGF 523
V TTHY +L NA+ EF++ETL PTY++L G G SNA +I++ +G
Sbjct: 441 GASVVATTHYPELKAYGYNRVHATNASVEFNVETLSPTYKLLIGVPGRSNAFDISRRLGL 500
Query: 524 DRKIIQRAQKLVERLRPERQQ-----HRKSELYQSLMEERRKLESQA-RTAASLHAEIMD 577
II A+ LV+ + K L ++ EE R+L A L EI +
Sbjct: 501 SENIITEARSLVDTESADLNDMISSLEEKRNLAETEYEEARELARGAGNLLKDLQKEISN 560
Query: 578 LYRE 581
Y++
Sbjct: 561 YYQQ 564
Score = 175 (66.7 bits), Expect = 8.7e-59, Sum P(2) = 8.7e-59
Identities = 73/277 (26%), Positives = 123/277 (44%)
Query: 4 AVVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPS 63
A+++ A + ++++Q + + + + S P+ + + D+ L G L+
Sbjct: 30 AILELAPATDFQVVQKTQLETEEGAKIIRLRGSAPI--TGLTDVFAHLKRLEIGGDLNGL 87
Query: 64 EICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKN-CNFLTELEEKIGFCIDC 122
EI + LR + + + E+ G L PLL L + L E+EE I +D
Sbjct: 88 EIYQIGSNLRVSRQMKNFMNDLLEI-GVEL----PLLGALSDELLVLKEVEEDIAISVD- 141
Query: 123 KLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGI 182
+ +LD ASE L IR +R + + L+ + + +IT R R + +
Sbjct: 142 ESGKVLDTASEALSTIRRTLRRTEDRVREKLESYLRDRNASKMLSDAVITIRNDRYVIPV 201
Query: 183 KASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIA 242
K +K GI + S+SG T F+EP+ V+ NN L E E IL+ ++A +A
Sbjct: 202 KQEYKGHY-GGIVHDQSASGQTLFIEPQSVVDLNNERKALQAKEKQEIERILAEISASLA 260
Query: 243 KSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILS 279
EI + + D FA+A F + M V P LS
Sbjct: 261 AWINEIHHNTFILGRFDFIFAKARFGKAMKAVTPHLS 297
>UNIPROTKB|Q81YJ6 [details] [associations]
symbol:BAS3289 "Putative MutS family protein" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR000432 InterPro:IPR005747 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 GO:GO:0045005 SUPFAM:SSF48334
PANTHER:PTHR11361:SF14 RefSeq:NP_845823.1 RefSeq:YP_020182.1
RefSeq:YP_029546.1 ProteinModelPortal:Q81YJ6 DNASU:1084555
EnsemblBacteria:EBBACT00000012461 EnsemblBacteria:EBBACT00000013528
EnsemblBacteria:EBBACT00000020130 GeneID:1084555 GeneID:2814989
GeneID:2849196 KEGG:ban:BA_3547 KEGG:bar:GBAA_3547 KEGG:bat:BAS3289
HOGENOM:HOG000094825 OMA:KMNVREH ProtClustDB:CLSK865470
BioCyc:BANT260799:GJAJ-3351-MONOMER
BioCyc:BANT261594:GJ7F-3461-MONOMER Uniprot:Q81YJ6
Length = 633
Score = 407 (148.3 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 86/256 (33%), Positives = 151/256 (58%)
Query: 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
VP++ ++ R ++ITGPN GGKT +KT+GL +L + +GL++ + F+ +
Sbjct: 313 VPLNFEIGQNYRSLIITGPNAGGKTIVLKTIGLLTLATMSGLHIAGDKETEIAIFENVFV 372
Query: 401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460
DIGD+QS+E LSTFS H+ + +I+ + + +L+L DEIGSGT+P+EG ALA SIL+
Sbjct: 373 DIGDNQSIENALSTFSSHMKNLSEIMRMSNNNTLLLFDEIGSGTEPNEGAALAISILEEF 432
Query: 461 RDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKS 520
+ V +THY ++ + F NAA +F+ ETL P Y+++ G +G+SNAL IA
Sbjct: 433 YLAGCITVASTHYGEIKRFSEMHDDFMNAAMQFNSETLEPLYKLVIGKSGESNALWIANK 492
Query: 521 IGFDRKIIQRAQKLVERLRPERQQHRKSELYQ-SLMEERRK--LESQARTAASL--HAEI 575
+ ++++RA+ + ++ +S++ + ++E+R+ E + +L H +
Sbjct: 493 MNVRERVLKRAKAYMGNKEYTLEKVNESKIRKPKFLQEKRENHYEYKIGDRVNLLDHDDF 552
Query: 576 MDLYREDSTSASISVY 591
+Y+E ++ VY
Sbjct: 553 GIIYKEKDNFYNVVVY 568
Score = 228 (85.3 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 79/292 (27%), Positives = 145/292 (49%)
Query: 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQP-LDLSTIEDIAGILNSAVSGQL 59
+G ++ K + P S++ + LN+T+ A A++ ++ + I +IA + G +
Sbjct: 26 LGKELINKLE-P-STSIKVVRNRLNETTEARAILDAEGHVPFFGISNIASTIQKLEKGMI 83
Query: 60 LSPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTE---LEEKI 116
L P E+ +V LR + KK LD + ++P+L N +TE +EE+I
Sbjct: 84 LDPEELVSVSDFLRGCRKI-KKFM----LDKEF---FAPVLA--SYANSMTEYKSIEEEI 133
Query: 117 GFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGG----IDKPLIT 172
F I K I AS++L+ IR N++++D +K+ + + I + I+
Sbjct: 134 NFSI--KGNSIDSAASKELKRIR----NNIDSVDGKIKERLTKFLNSSANKKYIQEFFIS 187
Query: 173 KRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETA 232
K+ R + IK+S+K + I + S+ G+T F+EP + N L E EE
Sbjct: 188 KKDDRYTIPIKSSYKNQVAGSI-VEASAKGSTVFIEPHTVTKLNAELASLKAEEAMEEYQ 246
Query: 233 ILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHV 284
IL+ L+ + ++ IK M+ + + D+ FA+A F++ +DG+ P L+ H+
Sbjct: 247 ILATLSGMVVENIYHIKINMELISQYDMVFAKAKFSKSIDGIEPKLNDHGHI 298
>TIGR_CMR|BA_3547 [details] [associations]
symbol:BA_3547 "MutS family protein, putative"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0006259 "DNA metabolic
process" evidence=ISS] InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 GO:GO:0045005 SUPFAM:SSF48334
PANTHER:PTHR11361:SF14 RefSeq:NP_845823.1 RefSeq:YP_020182.1
RefSeq:YP_029546.1 ProteinModelPortal:Q81YJ6 DNASU:1084555
EnsemblBacteria:EBBACT00000012461 EnsemblBacteria:EBBACT00000013528
EnsemblBacteria:EBBACT00000020130 GeneID:1084555 GeneID:2814989
GeneID:2849196 KEGG:ban:BA_3547 KEGG:bar:GBAA_3547 KEGG:bat:BAS3289
HOGENOM:HOG000094825 OMA:KMNVREH ProtClustDB:CLSK865470
BioCyc:BANT260799:GJAJ-3351-MONOMER
BioCyc:BANT261594:GJ7F-3461-MONOMER Uniprot:Q81YJ6
Length = 633
Score = 407 (148.3 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 86/256 (33%), Positives = 151/256 (58%)
Query: 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
VP++ ++ R ++ITGPN GGKT +KT+GL +L + +GL++ + F+ +
Sbjct: 313 VPLNFEIGQNYRSLIITGPNAGGKTIVLKTIGLLTLATMSGLHIAGDKETEIAIFENVFV 372
Query: 401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460
DIGD+QS+E LSTFS H+ + +I+ + + +L+L DEIGSGT+P+EG ALA SIL+
Sbjct: 373 DIGDNQSIENALSTFSSHMKNLSEIMRMSNNNTLLLFDEIGSGTEPNEGAALAISILEEF 432
Query: 461 RDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKS 520
+ V +THY ++ + F NAA +F+ ETL P Y+++ G +G+SNAL IA
Sbjct: 433 YLAGCITVASTHYGEIKRFSEMHDDFMNAAMQFNSETLEPLYKLVIGKSGESNALWIANK 492
Query: 521 IGFDRKIIQRAQKLVERLRPERQQHRKSELYQ-SLMEERRK--LESQARTAASL--HAEI 575
+ ++++RA+ + ++ +S++ + ++E+R+ E + +L H +
Sbjct: 493 MNVRERVLKRAKAYMGNKEYTLEKVNESKIRKPKFLQEKRENHYEYKIGDRVNLLDHDDF 552
Query: 576 MDLYREDSTSASISVY 591
+Y+E ++ VY
Sbjct: 553 GIIYKEKDNFYNVVVY 568
Score = 228 (85.3 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 79/292 (27%), Positives = 145/292 (49%)
Query: 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQP-LDLSTIEDIAGILNSAVSGQL 59
+G ++ K + P S++ + LN+T+ A A++ ++ + I +IA + G +
Sbjct: 26 LGKELINKLE-P-STSIKVVRNRLNETTEARAILDAEGHVPFFGISNIASTIQKLEKGMI 83
Query: 60 LSPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTE---LEEKI 116
L P E+ +V LR + KK LD + ++P+L N +TE +EE+I
Sbjct: 84 LDPEELVSVSDFLRGCRKI-KKFM----LDKEF---FAPVLA--SYANSMTEYKSIEEEI 133
Query: 117 GFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGG----IDKPLIT 172
F I K I AS++L+ IR N++++D +K+ + + I + I+
Sbjct: 134 NFSI--KGNSIDSAASKELKRIR----NNIDSVDGKIKERLTKFLNSSANKKYIQEFFIS 187
Query: 173 KRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETA 232
K+ R + IK+S+K + I + S+ G+T F+EP + N L E EE
Sbjct: 188 KKDDRYTIPIKSSYKNQVAGSI-VEASAKGSTVFIEPHTVTKLNAELASLKAEEAMEEYQ 246
Query: 233 ILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHV 284
IL+ L+ + ++ IK M+ + + D+ FA+A F++ +DG+ P L+ H+
Sbjct: 247 ILATLSGMVVENIYHIKINMELISQYDMVFAKAKFSKSIDGIEPKLNDHGHI 298
>UNIPROTKB|Q76DY7 [details] [associations]
symbol:mutS2 "MutS2 protein" species:274 "Thermus
thermophilus" [GO:0000400 "four-way junction DNA binding"
evidence=IDA] [GO:0004519 "endonuclease activity" evidence=IDA]
[GO:0006200 "ATP catabolic process" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IMP] [GO:0030983 "mismatched DNA
binding" evidence=IDA] HAMAP:MF_00092 InterPro:IPR000432
InterPro:IPR003593 InterPro:IPR005747 InterPro:IPR007696
Pfam:PF00488 PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00382
SMART:SM00533 SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625
GO:GO:0005524 GO:GO:0003684 GO:GO:0016887 GO:GO:0006298
GO:GO:0004519 GO:GO:0045910 SMART:SM00463 PROSITE:PS50828
GO:GO:0045005 SUPFAM:SSF48334 GO:GO:0000400 KO:K07456
PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069 EMBL:AB107662
RefSeq:YP_144911.1 ProteinModelPortal:Q76DY7 GeneID:3169358
KEGG:ttj:TTHA1645 Uniprot:Q76DY7
Length = 744
Score = 442 (160.7 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
Identities = 97/215 (45%), Positives = 140/215 (65%)
Query: 350 ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLE 409
+ R+++I+GPN GGKTA +KTLGLA LM+++GL++ A+ L W D + ADIGD QSL+
Sbjct: 307 KNRILLISGPNMGGKTALLKTLGLAVLMAQSGLFVAAEK-ALLAWPDRVYADIGDEQSLQ 365
Query: 410 QNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVV 469
+NLSTF+GH+ R+ ++LE + SLVLIDE+GSGTDP EG AL+ +IL+ L +R +V
Sbjct: 366 ENLSTFAGHLRRLREMLEEATSHSLVLIDELGSGTDPEEGAALSQAILEALLERGVKGMV 425
Query: 470 TTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQ 529
TTH + L +NA+ F LE LRPTY ++ G G S AL IA+ + ++++
Sbjct: 426 TTHLSPLKAFAQGREGIQNASMRFDLEALRPTYELVLGVPGRSYALAIARRLALPEEVLK 485
Query: 530 RAQKLVERLRPERQQHRKSELYQSLMEERRKLESQ 564
RA+ L+ PE R L + L ER LE++
Sbjct: 486 RAEALL----PEGG--RLEALLERLEAERLALEAE 514
Score = 155 (59.6 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
Identities = 77/270 (28%), Positives = 122/270 (45%)
Query: 5 VVQKAQIPFGKSLEESQKLLNQTSAALAM-MQSQPLDLSTIEDIAGILNSAVSGQLLSPS 63
+ ++A+ P G+ L + L + A + + L AG L A G+ L+ +
Sbjct: 17 LAERAKTPLGRELALALAPLPREEAEKRHELTGEALSYPYALPEAGTLREAY-GRALAGA 75
Query: 64 EICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCK 123
+ L+A K L EA L + L + L ++ + T E++ +D +
Sbjct: 76 RLSGPE-LLKAA----KALEEAMALKEELLPLKNALSQVAEGIGDHTPFLERVRKALD-E 129
Query: 124 LLIILDRASEDLELIRAE----RKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMC 179
+ D AS L IR E R++ ++ L +L+ + + FQ D+ +T RR R C
Sbjct: 130 EGAVKDEASPRLAQIRRELRPLRQQILDRLYALMDR-HREAFQ----DR-FVTLRRERYC 183
Query: 180 VGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTA 239
V ++A +P GI L+ S SGAT F+EP V+ NN L E E IL L+
Sbjct: 184 VPVRAGMAQKVP-GILLDESESGATLFIEPFSVVKLNNRLQALRLKEEEEVNRILRDLSE 242
Query: 240 EIAKSEREIKYLMDRVLEIDLAFARAGFAQ 269
+AK E K L L +DL A+A A+
Sbjct: 243 RLAKDEGVPKTLEALGL-LDLVQAQAALAR 271
>TIGR_CMR|GSU_0547 [details] [associations]
symbol:GSU_0547 "MutS2 family protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
HAMAP:MF_00092 InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814
SMART:SM00533 SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625
GO:GO:0005524 GO:GO:0003684 GO:GO:0006298 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0030983 SMART:SM00463
PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334 HOGENOM:HOG000135096
KO:K07456 OMA:HDQSSTG PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:NP_951605.1 ProteinModelPortal:Q74FQ9 GeneID:2685958
KEGG:gsu:GSU0547 PATRIC:22023851 ProtClustDB:CLSK827917
BioCyc:GSUL243231:GH27-531-MONOMER Uniprot:Q74FQ9
Length = 792
Score = 428 (155.7 bits), Expect = 2.8e-49, Sum P(2) = 2.8e-49
Identities = 92/223 (41%), Positives = 134/223 (60%)
Query: 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQN 411
+V+VITGPN GGKT S+KT GL LM+ AG+ +PA + P +L DIGD QS+EQ+
Sbjct: 342 QVMVITGPNAGGKTISLKTTGLLHLMALAGIPVPAASTSSFPLISDLLVDIGDEQSIEQS 401
Query: 412 LSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTT 471
LSTFS H+S I ILE R ++VL+DE+G+GT+P +G A++ ++L L+D+ L + TT
Sbjct: 402 LSTFSAHVSNIAGILERADRRTVVLLDELGTGTEPVQGAAISCAVLADLQDKGALVIATT 461
Query: 472 HYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRA 531
H D+ K NA+ EF +TL P YR+ G G S+AL IA+ G +++ A
Sbjct: 462 HLTDIVGFVHKRDGMVNASMEFDRQTLTPLYRLTVGEPGQSHALEIARRYGLPDRVVAVA 521
Query: 532 QKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAE 574
++ R+ E + H EL L ++RR+ E A L +
Sbjct: 522 TGMLSRM--ETEFH---ELLAELKDQRRRHEEALAEAERLRRD 559
Score = 142 (55.0 bits), Expect = 2.8e-49, Sum P(2) = 2.8e-49
Identities = 66/245 (26%), Positives = 113/245 (46%)
Query: 39 LDLSTIEDIAGILNSAV--SGQLLSPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRY 96
L L + EDIA +L +AV G +L P+E+ + LR + + K+ ++
Sbjct: 64 LSLRSFEDIAPLL-AAVRPDGAVLDPTELVVLFPILRTMTAIAKQFAYRTDI-------- 114
Query: 97 SPLL-ELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKK 155
PLL EL +L +++ ID + I LD AS L +R +++ E + L +
Sbjct: 115 -PLLRELAGTLTGFPDLLDELEVSIDSEGEI-LDSASPLLSDLRQKKRHLTERIRRRLAE 172
Query: 156 VAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEF 215
+ + + IT+R R + ++ K ++P G+ +VS+SG T FMEP +E
Sbjct: 173 IVRETGVTTFLQDDFITQRGGRWVIPVRMDSKGMVP-GVVHDVSNSGETAFMEP---LEI 228
Query: 216 NNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMD---RVL-EIDLAFARAGFAQWM 271
+ L N +AEE A + + I + R+ +D R+L +D+ A FA +
Sbjct: 229 IGLANELENL-VAEEKAEMIRIVRTICRMIRQEADGLDEQFRILVRLDVLNGIALFADSL 287
Query: 272 DGVCP 276
P
Sbjct: 288 GAETP 292
>UNIPROTKB|A8HMH7 [details] [associations]
symbol:CHLREDRAFT_146712 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0008094 EMBL:DS496108
SUPFAM:SSF48334 GO:GO:0000710 GO:GO:0032300 GO:GO:0000404
eggNOG:COG1193 RefSeq:XP_001690145.1 ProteinModelPortal:A8HMH7
EnsemblPlants:EDP09883 GeneID:5715553 KEGG:cre:CHLREDRAFT_146712
ProtClustDB:CLSN2920816 Uniprot:A8HMH7
Length = 1204
Score = 402 (146.6 bits), Expect = 1.1e-47, Sum P(2) = 1.1e-47
Identities = 86/175 (49%), Positives = 116/175 (66%)
Query: 362 GGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISR 421
G + + + LGLA+ M+KAGL LPA+ RLP F +LADIGD QSL NLSTFSGH+ R
Sbjct: 398 GEEPVTPQALGLAACMAKAGLPLPAEAPARLPAFSAVLADIGDEQSLTANLSTFSGHLRR 457
Query: 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL-RDRVG---LAVVTTHYADLS 477
I + ++L+L+DE+G+GTDP EG AL ++L+ L VG L V TTH++ ++
Sbjct: 458 IQTLRGEADGKALLLLDELGTGTDPLEGAALGLALLKRLVNGGVGAGALTVATTHHSIMT 517
Query: 478 CLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQ 532
LK D RFENA+ EF L PTY++LWG G SNALNIA +G D +++ A+
Sbjct: 518 GLKFDDPRFENASVEFDEAALAPTYKLLWGIPGRSNALNIASRLGLDEEVVSAAR 572
Score = 171 (65.3 bits), Expect = 1.1e-47, Sum P(2) = 1.1e-47
Identities = 75/269 (27%), Positives = 122/269 (45%)
Query: 19 ESQKLLNQTSAALAMMQ---SQPLD---LSTIEDIAGILNSAVSGQLLSPSEICAVRRTL 72
E+ +L+ QT A + +++ + LD + T E AG L+ A G +L+P ++ + +
Sbjct: 9 ETLRLIEQTRA-ITLLEYDWATSLDYGGIQTSEAEAG-LSRAAKGGMLTPQQLRGIVTLV 66
Query: 73 RAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLT---ELEEKIGFCIDCKLLIILD 129
+ K++ AA D D+L+ SP+ LL + L + ID + I D
Sbjct: 67 NGAERLRKQVVIAAR-DNDALRPDSPVRLLLAAVGRVRPQPHLLRSVAQAID-EDNNIQD 124
Query: 130 RASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYL 189
ASE L +R K L S+LK ++ GG RMCV + K
Sbjct: 125 SASEQLRGLRGRVKAIQSRLASMLKGYGGEVSDRGG-----------RMCVALPGGTK-- 171
Query: 190 LPDG-IALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEI-AEETAILSLLTAEIAKSERE 247
P G + L + G+ ++EP AV NN E+ + +E A E +L LT + E
Sbjct: 172 APSGGVLLGSAPGGSLVYVEPAAAVAMNN-ELGAARAEAQAAEEQVLWNLTGLVMGCLDE 230
Query: 248 IKYLMDRVLEIDLAFARAGFAQWMDGVCP 276
++ V +D+ ARA + W++GV P
Sbjct: 231 LQDAYRTVAWLDVLSARARYGIWVNGVLP 259
>UNIPROTKB|Q8TTB4 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:188937 "Methanosarcina acetivorans C2A" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:AE010299 GenomeReviews:AE010299_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:NP_615487.1 ProteinModelPortal:Q8TTB4
GeneID:1472415 KEGG:mac:MA0523 BioCyc:MACE188937:GI2O-590-MONOMER
Uniprot:Q8TTB4
Length = 900
Score = 280 (103.6 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 82/279 (29%), Positives = 149/279 (53%)
Query: 341 VPIDIKVEC-ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
VP D +++C E + +++TGPN GK+ M+ L ++M++ G ++PA ++ + D +
Sbjct: 619 VPNDTEMDCKENQFLLVTGPNMAGKSTYMRQTALIAIMAQVGSFVPA-SYASVGIIDQVF 677
Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
IG L STF + + +IL S +SLVL+DEIG GT +G ++A +++++
Sbjct: 678 TRIGAFDDLASGQSTFMVEMVELANILNNASPKSLVLLDEIGRGTSTYDGYSIAKAVVEF 737
Query: 460 LRDR--VGL-AVVTTHYADLSCLKDKDTRFEN--AATEFSLETLRPTYRILWGSTGDSNA 514
L +R VG+ A+ THY L+ L++K R +N A + L +I+ G+T S
Sbjct: 738 LHNRGKVGIRALFATHYHQLTALEEKLKRVKNYHIAVKEDGHELVFLRKIVPGATDRSYG 797
Query: 515 LNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAE 574
+++A+ G K+I+RA ++++ L E + E +K +S+A TA + +
Sbjct: 798 IHVARLAGVPEKVIERANEILKELERENVLEEAED-----GENGKKKKSKA-TAR--YTQ 849
Query: 575 IMDLYREDSTSASISVYRYQFAVTSTLSKVDFDAIPNID 613
++ L+ S S S + V + L KV+ D + I+
Sbjct: 850 ML-LFDPGSGSRSSEKAKGLSPVEAALKKVNPDEMTPIE 887
Score = 54 (24.1 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 45/229 (19%), Positives = 94/229 (41%)
Query: 41 LSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLL 100
LS + DI ++ V G S ++ A++++L V ++ L E A R+ L
Sbjct: 360 LSDVRDIERLVGRIVYGNA-SARDLVALKKSLGVVPSLRDSLLEKA--------RFEMLK 410
Query: 101 ELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQI 160
E+ + +ELEE + I+ ++ + + +I++ ++ L + I
Sbjct: 411 EIAEGLASFSELEE-LAEMIEIAIMDEPPVSVREGGMIKSGYSPELDELRDISSNSKQWI 469
Query: 161 --FQA-----GGIDKPLITKRRSRMCVGIKASH--KYLLPDGIALNVSSSGATYFMEPKG 211
FQ GI K L I+ +H +P+ + + A F P+
Sbjct: 470 AAFQQKERERSGI-KSLKVGYNKVFGYYIEVTHANSSQVPEDYIRKQTMANAERFFTPE- 527
Query: 212 AVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDL 260
E ++ + + +A E I + +T ++ RE++ +R+ +D+
Sbjct: 528 LKEKESLILTANEKAVALEYEIFAEITRTLSARSRELQETAERIGTLDV 576
Score = 37 (18.1 bits), Expect = 6.9e-20, Sum P(2) = 6.9e-20
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 70 RTLRAVNNVWKKLTEAAELDGDSLQRY 96
+ L +V + +L EL DSL RY
Sbjct: 328 KPLLSVEKINPRLDAIEELAEDSLLRY 354
>UNIPROTKB|O66652 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224324 "Aquifex aeolicus VF5" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0006298 "mismatch repair" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:AE000657 GenomeReviews:AE000657_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 PIR:H70327 RefSeq:NP_213212.1
ProteinModelPortal:O66652 GeneID:1192886 KEGG:aae:aq_308
PATRIC:20958222 HOGENOM:HOG000221406 OMA:ITQTVRD
BioCyc:AAEO224324:GJBH-228-MONOMER Uniprot:O66652
Length = 859
Score = 288 (106.4 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 64/229 (27%), Positives = 130/229 (56%)
Query: 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
VP D K++ ++ + VITGPN GK++ ++ +G+ +L+S G ++PA+ ++P D +
Sbjct: 590 VPNDTKLDRDSFIHVITGPNMAGKSSYIRQVGVLTLLSHIGSFIPARR-AKIPVVDALFT 648
Query: 401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460
IG L +STF + + +IL + +SLV++DE+G GT +G+A++ +I++Y+
Sbjct: 649 RIGSGDVLALGVSTFMNEMLEVSNILNNATEKSLVILDEVGRGTSTYDGIAISKAIVKYI 708
Query: 461 RDRV-GLAVVTTHYADLSCLKDKDTRFEN--AATEFSLETLRPTYRILWGSTGDSNALNI 517
+++ ++ TH+ +++ L+ K +N E + E +R Y + G S + +
Sbjct: 709 SEKLKAKTLLATHFLEITELEGKIEGVKNYHMEVEKTPEGIRFLYILKEGKAEGSFGIEV 768
Query: 518 AKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQAR 566
AK G ++++ A+K++ L E ++++K ++ L E +K E R
Sbjct: 769 AKLAGLPEEVVEEARKILREL--EEKENKKEDIVPLLEETFKKSEEAQR 815
Score = 44 (20.5 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 19/89 (21%), Positives = 41/89 (46%)
Query: 18 EESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77
E Q+L A L + Q L + D+ ++ S +S + +P E+ ++ +L+ V
Sbjct: 317 EGVQELKENREALLKIRQI----LEGMADLERLV-SKISSNMATPRELVYLKNSLKKVEE 371
Query: 78 VWKKLTEA-AELDGDSLQRYSPLLELLKN 105
+ L E A + + LQ + +++ +
Sbjct: 372 LRLLLLELKAPIFKEILQNFEDTKKIIND 400
Score = 40 (19.1 bits), Expect = 3.6e-21, Sum P(2) = 3.6e-21
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 130 RASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRM 178
R+ E +E I+ + EN ++LLK QI + + L++K S M
Sbjct: 307 RSREKIERIQEGVQELKENREALLK--IRQILEGMADLERLVSKISSNM 353
>CGD|CAL0001526 [details] [associations]
symbol:MSH2 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0032302 "MutSbeta complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0032301
"MutSalpha complex" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000404 "loop DNA binding" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IEA] [GO:0032138 "single base insertion or deletion
binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IEA]
[GO:0006311 "meiotic gene conversion" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0000735 "removal of nonhomologous ends" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 CGD:CAL0001526 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AACQ01000086 EMBL:AACQ01000085
eggNOG:COG0249 SUPFAM:SSF48334 KO:K08735 RefSeq:XP_715402.1
RefSeq:XP_715472.1 ProteinModelPortal:Q5A102 STRING:Q5A102
GeneID:3642853 GeneID:3642939 KEGG:cal:CaO19.10605
KEGG:cal:CaO19.3093 Uniprot:Q5A102
Length = 873
Score = 284 (105.0 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 71/224 (31%), Positives = 121/224 (54%)
Query: 344 DIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIG 403
D+K++ + +ITGPN GGK+ ++ +G +LM++ G ++PA + LP FD IL+ +G
Sbjct: 622 DVKMD-DKHFAIITGPNMGGKSTYIRQIGTIALMAQVGSFIPANDGAELPIFDAILSRVG 680
Query: 404 DHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR 463
S + LSTF + IL + SL++IDE+G GT +G LA +I + L R
Sbjct: 681 AGDSQLKGLSTFMIEMLETSSILATATANSLIIIDELGRGTSTYDGFGLAWAISEELIKR 740
Query: 464 VGLAVVTTHYADLSCLKDKDTRFENA--ATEFSLETLRPTYRILWGSTGDSNALNIAKSI 521
AV TH+ +LS L +K EN E + E + Y++ G + S +++A+ +
Sbjct: 741 KCFAVFATHFHELSQLSEKYDGVENLNLMAEQTNEDITLIYKVGPGISNTSFGISVAEKL 800
Query: 522 GFDRKIIQRAQKLVERLRPE---RQQHRKSELYQSLMEERRKLE 562
KI+ A++ VE L E ++Q ++E+ + + R L+
Sbjct: 801 HMPEKIVNMAKRKVEELSEEPPIKKQCSETEVREGMSRLREILK 844
>SGD|S000000688 [details] [associations]
symbol:MSH3 "Mismatch repair protein" species:4932
"Saccharomyces cerevisiae" [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0032302 "MutSbeta complex"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0030983
"mismatched DNA binding" evidence=IEA;IDA] [GO:0000735 "removal of
nonhomologous ends" evidence=IGI;IMP;TAS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006312 "mitotic recombination"
evidence=IMP] [GO:0000403 "Y-form DNA binding" evidence=IDA]
[GO:0000404 "loop DNA binding" evidence=IDA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IDA]
[GO:0000710 "meiotic mismatch repair" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0032135 "DNA insertion or deletion
binding" evidence=IDA] [GO:0006310 "DNA recombination"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000000688 GO:GO:0005524 GO:GO:0005737
GO:GO:0003684 EMBL:X59720 EMBL:BK006937 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0032135 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0032302 GO:GO:0000406 GO:GO:0000735 KO:K08736 OMA:KRTKSIY
HOGENOM:HOG000057130 OrthoDB:EOG42NN7M EMBL:X64954 EMBL:M96250
PIR:S19508 RefSeq:NP_010016.2 ProteinModelPortal:P25336 SMR:P25336
DIP:DIP-2422N IntAct:P25336 MINT:MINT-633647 STRING:P25336
PaxDb:P25336 PeptideAtlas:P25336 PRIDE:P25336 EnsemblFungi:YCR092C
GeneID:850454 KEGG:sce:YCR092C CYGD:YCR092c
GeneTree:ENSGT00550000074949 NextBio:966078 Genevestigator:P25336
GermOnline:YCR092C Uniprot:P25336
Length = 1018
Score = 273 (101.2 bits), Expect = 3.9e-20, P = 3.9e-20
Identities = 77/247 (31%), Positives = 132/247 (53%)
Query: 341 VPIDIKVECET-RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
VP DI + E ++ +ITGPN GGK++ ++ + L ++M++ G ++PA+ RL F+ +L
Sbjct: 773 VPNDIMMSPENGKINIITGPNMGGKSSYIRQVALLTIMAQIGSFVPAEEI-RLSIFENVL 831
Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
IG H + STF + I+ IL+ ++ SL+L+DE+G GT +G+A++ ++++Y
Sbjct: 832 TRIGAHDDIINGDSTFKVEMLDILHILKNCNKRSLLLLDEVGRGTGTHDGIAISYALIKY 891
Query: 460 LRDRVG--LAVVTTHYADLSCLKDKDTR------FENAATEFSLETLRPTYRILWGSTGD 511
+ L + TTH+ L +K R E T ++ Y++ G T +
Sbjct: 892 FSELSDCPLILFTTHFPMLGEIKSPLIRNYHMDYVEEQKTGEDWMSVIFLYKLKKGLTYN 951
Query: 512 SNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASL 571
S +N+AK D+ II RA + E LR E +L+ SL +R L+S TA
Sbjct: 952 SYGMNVAKLARLDKDIINRAFSISEELRKESINEDALKLFSSL---KRILKSDNITATDK 1008
Query: 572 HAEIMDL 578
A+++ L
Sbjct: 1009 LAKLLSL 1015
>UNIPROTKB|B1N4L6 [details] [associations]
symbol:EHI_123830 "DNA mismatch repair protein Msh2,
putative" species:5759 "Entamoeba histolytica" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 EMBL:DS571433 RefSeq:XP_001914132.1
ProteinModelPortal:B1N4L6 STRING:B1N4L6 GeneID:6220147
KEGG:ehi:EHI_123830 EuPathDB:AmoebaDB:EHI_123830 InParanoid:B1N4L6
ProtClustDB:CLSZ2734733 Uniprot:B1N4L6
Length = 630
Score = 267 (99.0 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 67/224 (29%), Positives = 124/224 (55%)
Query: 333 SKGISDFPVPIDIKVEC-ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPR 391
+ I+ F + DI ++ ETR +ITGPN GGK+ ++ +GL +M++ G+++P +
Sbjct: 342 NNSINSF-IENDIDIDRKETRFQIITGPNMGGKSTYLRMIGLCVIMAQIGMFIPC-SEAH 399
Query: 392 LPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVA 451
+ D I+ IG ++ + +STF + +I++ ++ SLVLIDE+G GT +G
Sbjct: 400 ISICDKIMCRIGAGDNIVEGMSTFMSEMKDTSEIIKKSTKNSLVLIDELGRGTSTYDGFG 459
Query: 452 LATSILQYLRDRVGL-AVVTTHYADLSCLKDKDTRFENAATEFSL--ETLRPTYRILWGS 508
+A +I +YL +G V TH+ +++ L+ + T N E + + L Y+I GS
Sbjct: 460 IAWAISEYLAIDIGCYCVFATHFHEITGLEKRVTGVINKHVEADIIDKQLVLKYKINNGS 519
Query: 509 TGDSNALNIAKSIGFDRKIIQRAQKLVERLRPER-QQHRKSELY 551
T S A+ +A+ F ++++ A++ + L ++ RK EL+
Sbjct: 520 TDQSLAIYVAEWADFPHEVVESAKRKAKELDLDQPDSKRKIELF 563
>UNIPROTKB|P49849 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0030983
GO:GO:0008094 EMBL:U27343 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
GO:GO:0032300 KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 PIR:C69663
RefSeq:NP_389586.2 ProteinModelPortal:P49849 SMR:P49849
EnsemblBacteria:EBBACT00000003342 GeneID:939501 KEGG:bsu:BSU17040
PATRIC:18975215 GenoList:BSU17040 BioCyc:BSUB:BSU17040-MONOMER
Uniprot:P49849
Length = 858
Score = 263 (97.6 bits), Expect = 3.6e-19, P = 3.6e-19
Identities = 74/253 (29%), Positives = 134/253 (52%)
Query: 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
VP + + ++++ITGPN GK+ M+ + L S+M++ G ++PAK LP FD I
Sbjct: 585 VPNNCMMGDNRQMLLITGPNMSGKSTYMRQIALISIMAQIGCFVPAKKAV-LPIFDQIFT 643
Query: 401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460
IG L STF + + + ++ SL+L DEIG GT +G+ALA +I++Y+
Sbjct: 644 RIGAADDLISGQSTFMVEMLEAKNAIVNATKNSLILFDEIGRGTSTYDGMALAQAIIEYV 703
Query: 461 RDRVGLAVV-TTHYADLSCLKDKDTRFENA---ATEFSLETLRPTYRILWGSTGDSNALN 516
D +G + +THY +L+ L+DK + +N A E++ T+ ++I G+ S ++
Sbjct: 704 HDHIGAKTLFSTHYHELTVLEDKLPQLKNVHVRAEEYN-GTVVFLHQIKEGAADKSYGIH 762
Query: 517 IAKSIGFDRKIIQRAQKLVERL-----RPE---RQQHRKSELYQ-SLMEERRKLESQART 567
+A+ +I RAQ +++ L +PE ++ K E Q S +E K ++
Sbjct: 763 VAQLAELPGDLIARAQDILKELEHSGNKPEVPVQKPQVKEEPAQLSFFDEAEK-PAETPK 821
Query: 568 AASLHAEIMDLYR 580
+ +++D ++
Sbjct: 822 LSKKEKQVIDAFK 834
>TIGR_CMR|CBU_1056 [details] [associations]
symbol:CBU_1056 "DNA mismatch repair protein MutS"
species:227377 "Coxiella burnetii RSA 493" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_820057.2
ProteinModelPortal:Q83CQ2 SMR:Q83CQ2 PRIDE:Q83CQ2 GeneID:1208957
KEGG:cbu:CBU_1056 PATRIC:17930837
BioCyc:CBUR227377:GJ7S-1048-MONOMER Uniprot:Q83CQ2
Length = 859
Score = 267 (99.0 bits), Expect = 8.1e-19, Sum P(2) = 8.1e-19
Identities = 74/219 (33%), Positives = 113/219 (51%)
Query: 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
+P D ++ + R+++ITGPN GGK+ M+ L +L++ G ++PAKN P D I
Sbjct: 605 MPNDTHLDEKRRMLIITGPNMGGKSTYMRQTALITLLAYIGSFVPAKNAQLGP-IDRIFT 663
Query: 401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460
IG L STF ++ IL + ESLVL+DE+G GT +G++LA + YL
Sbjct: 664 RIGAADDLASGRSTFMVEMTETAAILHNATEESLVLMDEVGRGTSTFDGLSLAYACASYL 723
Query: 461 RDRV-GLAVVTTHYADLSCLKDKDTRFENA---ATEFSLETLRPTYRILWGSTGDSNALN 516
++ A+ THY +L+ L +N A E E + + + G S L
Sbjct: 724 ATKLKAFALFATHYFELTALASTLQAVKNVHLDAVEHE-EKIIFLHALREGPANKSYGLQ 782
Query: 517 IAKSIGFDRKIIQRA-QKLVERLRP---ERQQHRKSELY 551
+A+ G R +IQ A QKL E P E QQ +++EL+
Sbjct: 783 VAQLAGIPRSVIQHARQKLEELENPVISETQQPQQNELF 821
Score = 40 (19.1 bits), Expect = 8.1e-19, Sum P(2) = 8.1e-19
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 24 LNQTSAALAMMQSQPLDLSTIEDIAGIL 51
L + A +A+ ++P DL + G+L
Sbjct: 355 LERIVARIALRSARPRDLMQLRQALGVL 382
>TIGR_CMR|CHY_1397 [details] [associations]
symbol:CHY_1397 "DNA mismatch repair protein HexA"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0005524 "ATP binding" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006298 GO:GO:0030983 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
OMA:HYFELTV KO:K03555 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_360229.1 ProteinModelPortal:Q3ACA5
STRING:Q3ACA5 GeneID:3728668 KEGG:chy:CHY_1397 PATRIC:21275925
BioCyc:CHYD246194:GJCN-1396-MONOMER Uniprot:Q3ACA5
Length = 841
Score = 268 (99.4 bits), Expect = 9.3e-19, Sum P(2) = 9.3e-19
Identities = 67/243 (27%), Positives = 135/243 (55%)
Query: 321 DVENSEMTVGSLSKGISDFPVPIDIKVEC-ETRVVVITGPNTGGKTASMKTLGLASLMSK 379
+++N V S G ++F VP D+ ++ E +++ITGPN GK+ M+ L ++++
Sbjct: 563 EIKNGRHPVVEKSVGRANF-VPNDLYLDTKENSLLLITGPNMAGKSTYMRQAALIVILAQ 621
Query: 380 AGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDE 439
G ++PA+ + R+ D IL IG L + STF + +IL + SL+L+DE
Sbjct: 622 IGSFVPAE-YARVGLVDKILTRIGATDDLAKGQSTFMVEMIECNNILRNATSRSLILLDE 680
Query: 440 IGSGTDPSEGVALATSILQYLRDRV-GLAVVTTHYADLSCLKDKDTRFEN--AATEFSLE 496
+G GT +G+++A +I++Y++ ++ + +THY +L+ L+ + +N + E
Sbjct: 681 VGRGTSTYDGISIAEAIIEYIQKKIKARTLFSTHYHELTGLEGEIPGVKNFTVLVQEKGE 740
Query: 497 TLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQ-SLM 555
++ ++++ G T S + +AK G R++++RA +++ R + + + + Q SL
Sbjct: 741 EVKFLHKVVPGKTDKSYGIYVAKLAGLPREVVERAYEILARFEDKGLKVKDTVPVQLSLF 800
Query: 556 EER 558
EE+
Sbjct: 801 EEK 803
Score = 38 (18.4 bits), Expect = 9.3e-19, Sum P(2) = 9.3e-19
Identities = 13/67 (19%), Positives = 29/67 (43%)
Query: 215 FNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGV 274
+ N+ + S E + + +EI K + ++K V +D + A A D
Sbjct: 493 YENLILGASEKLANLEYELFCEIRSEILKYQEDLKRAASAVALLDFLISLAVAAIEYDFT 552
Query: 275 CPILSSQ 281
P+++++
Sbjct: 553 RPVITAE 559
>POMBASE|SPAC8F11.03 [details] [associations]
symbol:msh3 "MutS protein homolog 3" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=ISO] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0007534 "gene conversion at
mating-type locus" evidence=IMP] [GO:0032135 "DNA insertion or
deletion binding" evidence=ISO] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IMP] [GO:0061500 "gene conversion at
mating-type locus, termination of copy-synthesis" evidence=IMP]
[GO:0006298 "mismatch repair" evidence=TAS] [GO:0000403 "Y-form DNA
binding" evidence=ISO] [GO:0000404 "loop DNA binding" evidence=ISO]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPAC8F11.03
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006281
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0032135 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0000406 GO:GO:0007534 OrthoDB:EOG42NN7M EMBL:X61306
PIR:S22569 ProteinModelPortal:P26359 STRING:P26359 PRIDE:P26359
NextBio:20804407 Uniprot:P26359
Length = 993
Score = 262 (97.3 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 68/224 (30%), Positives = 117/224 (52%)
Query: 341 VPIDIKVECE-TRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
VP I + + R ++ITGPN GGK++ +K L L+++M+++G ++PAK+ LP FD IL
Sbjct: 741 VPNHIHLSSDGVRCLLITGPNMGGKSSFVKQLALSAIMAQSGCFVPAKS-ALLPIFDSIL 799
Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
+G +L N+STF + ++L + +S+V+IDE+G GT +G A++ ++L Y
Sbjct: 800 IRMGSSDNLSVNMSTFMVEMLETKEVLSKATEKSMVIIDELGRGTSTIDGEAISYAVLHY 859
Query: 460 LRDRV-GLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPT--------------YRI 504
L + + TH+ L L + RFE F + L+ Y++
Sbjct: 860 LNQYIKSYLLFVTHFPSLGIL---ERRFEGQLRCFHMGYLKSKEDFETSVSQSISFLYKL 916
Query: 505 LWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKS 548
+ G S LN+A+ G I+ RA ++ E + + RK+
Sbjct: 917 VPGVASKSYGLNVARMAGIPFSILSRATEISENYEKKHRNARKN 960
Score = 46 (21.3 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 21/90 (23%), Positives = 39/90 (43%)
Query: 177 RMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSL 236
+ C+ + K + PD I L+ S+ F PK + N I+ E S
Sbjct: 618 KFCIEVSKGCKKIPPDWIKLS-STRSLFRFHTPKIQSLLIELSSHEENLTISSEKIYRSF 676
Query: 237 LTAEIAKSEREIKYLMDRVLEID--LAFAR 264
L+ I++ E++ + + +D ++FAR
Sbjct: 677 LS-RISEHYNELRNVTTVLGTLDCLISFAR 705
>RGD|1563954 [details] [associations]
symbol:Msh3 "mutS homolog 3 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003684 "damaged DNA
binding" evidence=ISO] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair" evidence=ISO]
[GO:0008150 "biological_process" evidence=ND] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=ISO]
[GO:0019237 "centromeric DNA binding" evidence=ISO] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0032302 "MutSbeta complex"
evidence=ISO] [GO:0043570 "maintenance of DNA repeat elements"
evidence=ISO] [GO:0045910 "negative regulation of DNA
recombination" evidence=ISO] [GO:0051096 "positive regulation of
helicase activity" evidence=ISO] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=ISO] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO] [GO:0042803 "protein
homodimerization activity" evidence=ISO] [GO:0032357 "oxidized
purine DNA binding" evidence=ISO] [GO:0003697 "single-stranded DNA
binding" evidence=ISO] [GO:0030983 "mismatched DNA binding"
evidence=ISO] [GO:0032139 "dinucleotide insertion or deletion
binding" evidence=ISO] [GO:0032142 "single guanine insertion
binding" evidence=ISO] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=ISO] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 RGD:1563954 GO:GO:0005524
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 GO:GO:0000710
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HOGENOM:HOG000029776
GO:GO:0016447 IPI:IPI00196502 UniGene:Rn.162551 EMBL:BC091283
ProteinModelPortal:Q5BJY1 STRING:Q5BJY1 UCSC:RGD:1563954
HOVERGEN:HBG071048 InParanoid:Q5BJY1 ArrayExpress:Q5BJY1
Genevestigator:Q5BJY1 Uniprot:Q5BJY1
Length = 265
Score = 206 (77.6 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 45/132 (34%), Positives = 79/132 (59%)
Query: 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQN 411
RV++ITGPN GGK++ +K + L +M++ G Y+PA+ + D I G ++ +
Sbjct: 8 RVMIITGPNMGGKSSYIKQVALVVIMAQIGSYVPAEE-ATIGIVDGIFTRRGAADNIYKG 66
Query: 412 LSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY-LRDRVGLAVVT 470
STF ++ +I++ ++ SLV++DE+G GT +G+A+A + L+Y +RD L +
Sbjct: 67 RSTFMEELTDTAEIIQKATQRSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFV 126
Query: 471 THYADLSCLKDK 482
THY + C +K
Sbjct: 127 THYPPV-CELEK 137
Score = 51 (23.0 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 502 YRILWGSTGDSNALNIAKSIGFDRKIIQRA 531
Y+I G S LN+AK R+I+Q+A
Sbjct: 175 YQITRGIAARSYGLNVAKLADVPREILQKA 204
>UNIPROTKB|F1SQH4 [details] [associations]
symbol:LOC100739713 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 PROSITE:PS00486
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
SUPFAM:SSF48334 GeneTree:ENSGT00550000074867 EMBL:CU928288
RefSeq:XP_003481267.1 Ensembl:ENSSSCT00000009231 GeneID:100739713
KEGG:ssc:100739713 ArrayExpress:F1SQH4 Uniprot:F1SQH4
Length = 450
Score = 252 (93.8 bits), Expect = 1.2e-18, P = 1.2e-18
Identities = 61/201 (30%), Positives = 110/201 (54%)
Query: 341 VPIDIKVECETRVV-VITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
+P D+ E + ++ +ITGPN GGK+ ++ G+ LM++ G ++P ++ + D IL
Sbjct: 167 IPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVVVLMAQIGCFVPCES-AEVSIVDCIL 225
Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
A +G S + +STF + IL +++SL++IDE+G GT +G LA +I +Y
Sbjct: 226 ARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEY 285
Query: 460 LRDRVG-LAVVTTHYADLSCLKDKDTRFENA-ATEFSLE-TLRPTYRILWGSTGDSNALN 516
+ ++G + TH+ +L+ L ++ N T + E TL Y++ G S ++
Sbjct: 286 IATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIH 345
Query: 517 IAKSIGFDRKIIQRA-QKLVE 536
+A+ F R +I+ A QK +E
Sbjct: 346 VAELANFPRHVIECAKQKALE 366
>CGD|CAL0000288 [details] [associations]
symbol:orf19.3608 species:5476 "Candida albicans" [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000735 "removal of nonhomologous ends"
evidence=IEA] [GO:0000710 "meiotic mismatch repair" evidence=IEA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IEA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IEA] [GO:0032135 "DNA insertion or deletion binding"
evidence=IEA] [GO:0000404 "loop DNA binding" evidence=IEA]
[GO:0000403 "Y-form DNA binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0005634 GO:GO:0006298 GO:GO:0030983
EMBL:AACQ01000103 EMBL:AACQ01000102 eggNOG:COG0249 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HSSP:P23909 KO:K08736
RefSeq:XP_714452.1 RefSeq:XP_714501.1 ProteinModelPortal:Q59Y41
STRING:Q59Y41 GeneID:3643846 GeneID:3643889 KEGG:cal:CaO19.11091
KEGG:cal:CaO19.3608 Uniprot:Q59Y41
Length = 1037
Score = 259 (96.2 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 67/213 (31%), Positives = 117/213 (54%)
Query: 343 IDIKVECE-TRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILAD 401
I+I +E + RV++ITGPN GGK++ +KT+ L ++M++ G YLP +N + FD I
Sbjct: 784 ININIEYDKNRVLIITGPNMGGKSSYVKTVALLTVMTQIGCYLPCQN-ATMGIFDSIFIR 842
Query: 402 IGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR 461
+G + ++ + STF + + +I+ ++S SL+++DEIG GT +G++LA SIL+YL
Sbjct: 843 MGANDNILKGYSTFMMEMLQCKNIISMMSNRSLIILDEIGRGTGTIDGISLAYSILKYLI 902
Query: 462 DRV--GLAVVTTHYADLSCLKDKD-----TRFENAATEFSLETLR--PT----YRILWGS 508
+ L + THY + L+ + + E T P Y + G
Sbjct: 903 ESEFKPLVLFITHYPSIHVLEQEYPNQLVVNYHMGYQEIKNNTPGEIPEIIFLYNLCRGV 962
Query: 509 TGDSNALNIAKSIGFDRKIIQRAQKLVERLRPE 541
+S LN+AK G II++A ++ E+++ +
Sbjct: 963 VNNSYGLNVAKLAGISHDIIKQAYRVSEKVKSD 995
>UNIPROTKB|P74926 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:243274 "Thermotoga maritima MSB8" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0006298 "mismatch repair" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:AE000512 GenomeReviews:AE000512_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 EMBL:U71155 PIR:C72219 RefSeq:NP_229518.1
ProteinModelPortal:P74926 GeneID:897879 KEGG:tma:TM1719
PATRIC:23938414 Uniprot:P74926
Length = 793
Score = 257 (95.5 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 67/211 (31%), Positives = 114/211 (54%)
Query: 344 DIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIG 403
DI ++ E R VVITGPN GK+ ++ +GL SLM++ G ++PA+ LP FD I +G
Sbjct: 575 DIYMDNEKRFVVITGPNMSGKSTFIRQVGLISLMAQIGSFVPAQK-AILPVFDRIFTRMG 633
Query: 404 DHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR 463
L STF ++ + IL + +SLVL+DE+G GT +GV++A +I + L R
Sbjct: 634 ARDDLAGGRSTFLVEMNEMALILLKSTNKSLVLLDEVGRGTSTQDGVSIAWAISEELIKR 693
Query: 464 VGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRP--TYRILWGSTGDSNALNIAKSI 521
+ TH+ +L+ L+ + +N E T++++ G S + +AK
Sbjct: 694 GCKVLFATHFTELTELEKHFPQVQNKTILVKEEGKNVIFTHKVVDGVADRSYGIEVAKIA 753
Query: 522 GFDRKIIQRAQKLVER-LRPERQQHRKSELY 551
G ++I RA +++ER + +++ KS +
Sbjct: 754 GIPDRVINRAYEILERNFKNNTKKNGKSNRF 784
>UNIPROTKB|F1SQH6 [details] [associations]
symbol:LOC100739713 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074867 EMBL:CU928288 EMBL:FP102206
EMBL:FP476038 Ensembl:ENSSSCT00000009229 OMA:KGACDQS
ArrayExpress:F1SQH6 Uniprot:F1SQH6
Length = 584
Score = 252 (93.8 bits), Expect = 2.7e-18, P = 2.7e-18
Identities = 61/201 (30%), Positives = 110/201 (54%)
Query: 341 VPIDIKVECETRVV-VITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
+P D+ E + ++ +ITGPN GGK+ ++ G+ LM++ G ++P ++ + D IL
Sbjct: 301 IPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVVVLMAQIGCFVPCES-AEVSIVDCIL 359
Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
A +G S + +STF + IL +++SL++IDE+G GT +G LA +I +Y
Sbjct: 360 ARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEY 419
Query: 460 LRDRVG-LAVVTTHYADLSCLKDKDTRFENA-ATEFSLE-TLRPTYRILWGSTGDSNALN 516
+ ++G + TH+ +L+ L ++ N T + E TL Y++ G S ++
Sbjct: 420 IATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIH 479
Query: 517 IAKSIGFDRKIIQRA-QKLVE 536
+A+ F R +I+ A QK +E
Sbjct: 480 VAELANFPRHVIECAKQKALE 500
>UNIPROTKB|A6V1G8 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:381754 "Pseudomonas aeruginosa PA7" [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
EMBL:CP000744 GenomeReviews:CP000744_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:YP_001346903.1
ProteinModelPortal:A6V1G8 SMR:A6V1G8 STRING:A6V1G8 GeneID:5355863
KEGG:pap:PSPA7_1519 PATRIC:19824849
BioCyc:PAER381754:GHMY-1583-MONOMER Uniprot:A6V1G8
Length = 855
Score = 253 (94.1 bits), Expect = 4.5e-18, P = 4.5e-18
Identities = 66/205 (32%), Positives = 104/205 (50%)
Query: 344 DIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIG 403
D+ ++ +TR++VITGPN GGK+ M+ L L++ G ++PA L D I IG
Sbjct: 599 DLALDADTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAARC-ELSLVDRIFTRIG 657
Query: 404 DHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR 463
L STF +S +IL + +SLVL+DE+G GT +G++LA + + L
Sbjct: 658 SSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFDGLSLAWAAAEDLART 717
Query: 464 VGLAVVTTHYADLSCLKDKDTRFENA---ATEFSLETLRPTYRILWGSTGDSNALNIAKS 520
+ THY +L+ L + N ATE + E + + +L G S L +A+
Sbjct: 718 RAFTLFATHYFELTVLPESQPAVANVHLNATEHN-ERIVFLHHVLPGPASQSYGLAVAQL 776
Query: 521 IGFDRKIIQRAQKLVERLRPERQQH 545
G +IQRA++ ++RL H
Sbjct: 777 AGVPSPVIQRAREHLKRLETTSLPH 801
>UNIPROTKB|Q3KKQ0 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:315277 "Chlamydia trachomatis A/HAR-13" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:CP000051 GenomeReviews:CP000051_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:YP_328620.1
ProteinModelPortal:Q3KKQ0 STRING:Q3KKQ0 GeneID:3687872
KEGG:cta:CTA_0862 PATRIC:32023672
BioCyc:CTRA315277:GI4C-873-MONOMER Uniprot:Q3KKQ0
Length = 820
Score = 251 (93.4 bits), Expect = 6.9e-18, P = 6.9e-18
Identities = 63/222 (28%), Positives = 121/222 (54%)
Query: 341 VPID-IKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
+P D + +TR++++TGPN GK+ ++ + L +M++ G ++PA++ + D I
Sbjct: 600 IPNDTVMHSAQTRMILLTGPNMAGKSTYIRQIALLVIMAQMGSFIPARS-AHIGIVDKIF 658
Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
IG +L + +STF ++ +IL + SLV++DEIG GT +G+A+A +++++
Sbjct: 659 TRIGAGDNLSKGMSTFMVEMAETANILHNATDRSLVILDEIGRGTSTYDGLAIAQAVVEF 718
Query: 460 LRDRVGLAVVT---THYADLSCLKDKDTRFENAATEFSLETLRPT--YRILWGSTGDSNA 514
L G T THY +L+ L+ EN + +P Y I+ G + S
Sbjct: 719 LLFTDGKKAKTLFATHYKELTELEMHCQHVENFHAMVKENSGQPIFMYEIVKGHSKKSFG 778
Query: 515 LNIAKSIGFDRKIIQRAQKLVER-----LRPERQQHRKSELY 551
+++AK GF ++ RAQ+++ + LRPE ++ ++ ++
Sbjct: 779 IHVAKLAGFPLSVVSRAQQILHQFEGPDLRPEPEKAQQLVMF 820
>TIGR_CMR|BA_3905 [details] [associations]
symbol:BA_3905 "DNA mismatch repair protein MutS"
species:198094 "Bacillus anthracis str. Ames" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006298
GO:GO:0030983 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_846152.1
RefSeq:YP_020544.1 RefSeq:YP_029871.1 ProteinModelPortal:Q81WR3
DNASU:1087964 EnsemblBacteria:EBBACT00000010607
EnsemblBacteria:EBBACT00000017303 EnsemblBacteria:EBBACT00000020116
GeneID:1087964 GeneID:2814777 GeneID:2848878 KEGG:ban:BA_3905
KEGG:bar:GBAA_3905 KEGG:bat:BAS3618
BioCyc:BANT260799:GJAJ-3677-MONOMER
BioCyc:BANT261594:GJ7F-3794-MONOMER Uniprot:Q81WR3
Length = 892
Score = 249 (92.7 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 63/206 (30%), Positives = 108/206 (52%)
Query: 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
VP D + V +ITGPN GK+ M+ L L ++MS+ G ++PA LP FD I
Sbjct: 590 VPNDCIMPENMDVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPA-TEAVLPVFDQIFT 648
Query: 401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460
IG L STF + + + S SL+L DEIG GT +G+ALA +I++++
Sbjct: 649 RIGAADDLISGQSTFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHI 708
Query: 461 RDRVGLAVV-TTHYADLSCLKDKDTRFENAATEFSLETLRPTY--RILWGSTGDSNALNI 517
D++G + +THY +L+ L+D + +N E + + +I G+ S +++
Sbjct: 709 HDQIGAKTLFSTHYHELTVLEDSLDQLKNVHVSAIEENGKVVFLHKIQDGAADKSYGIHV 768
Query: 518 AKSIGFDRKIIQRAQKLVERLRPERQ 543
A+ +I RA++++ +L + +
Sbjct: 769 AQLAELPDSLIARAKEVLAQLEGQEE 794
>RGD|620786 [details] [associations]
symbol:Msh2 "mutS homolog 2 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000287 "magnesium ion binding" evidence=IEA;ISO] [GO:0000400
"four-way junction DNA binding" evidence=IEA;ISO;IBA] [GO:0000403
"Y-form DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0001701 "in utero embryonic development"
evidence=IEA;ISO] [GO:0002204 "somatic recombination of
immunoglobulin genes involved in immune response" evidence=ISO]
[GO:0003677 "DNA binding" evidence=ISO;ISS] [GO:0003684 "damaged
DNA binding" evidence=ISO;IBA] [GO:0003697 "single-stranded DNA
binding" evidence=IEA;ISO] [GO:0005524 "ATP binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006119 "oxidative phosphorylation" evidence=IEA;ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair"
evidence=IEA;ISO] [GO:0006301 "postreplication repair"
evidence=ISO;ISS;IBA] [GO:0006302 "double-strand break repair"
evidence=IEA;ISO;IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0006915 "apoptotic process" evidence=IEA;ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0007050 "cell cycle arrest" evidence=IEA;ISO] [GO:0007281 "germ
cell development" evidence=IEA;ISO] [GO:0007283 "spermatogenesis"
evidence=IEP] [GO:0008022 "protein C-terminus binding"
evidence=IEA;ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008340 "determination of adult lifespan"
evidence=IEA;ISO] [GO:0008584 "male gonad development"
evidence=IEA;ISO] [GO:0010165 "response to X-ray"
evidence=IEA;ISO;IBA] [GO:0010224 "response to UV-B"
evidence=IEA;ISO;IBA] [GO:0014070 "response to organic cyclic
compound" evidence=IEP] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IEA;ISO;IBA] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=IEA;ISO] [GO:0019237
"centromeric DNA binding" evidence=IEA;ISO] [GO:0019724 "B cell
mediated immunity" evidence=ISO] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0019901 "protein kinase binding"
evidence=IEA;ISO] [GO:0030183 "B cell differentiation"
evidence=IEA;ISO] [GO:0030983 "mismatched DNA binding"
evidence=ISO] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IEA;ISO;IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA;ISO;IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032142 "single guanine
insertion binding" evidence=IEA;ISO] [GO:0032143 "single thymine
insertion binding" evidence=IEA;ISO] [GO:0032181 "dinucleotide
repeat insertion binding" evidence=IEA;ISO] [GO:0032301 "MutSalpha
complex" evidence=IEA;ISO;IBA] [GO:0032302 "MutSbeta complex"
evidence=IEA;ISO;IBA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA;ISO] [GO:0032405 "MutLalpha complex binding"
evidence=IEA;ISO] [GO:0042493 "response to drug" evidence=IEP]
[GO:0042771 "intrinsic apoptotic signaling pathway in response to
DNA damage by p53 class mediator" evidence=IBA] [GO:0042803
"protein homodimerization activity" evidence=IEA;ISO] [GO:0043066
"negative regulation of apoptotic process" evidence=ISO]
[GO:0043200 "response to amino acid stimulus" evidence=IEP]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA;ISO] [GO:0043531 "ADP binding" evidence=IEA;ISO]
[GO:0043570 "maintenance of DNA repeat elements"
evidence=IEA;ISO;IBA] [GO:0045128 "negative regulation of
reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=IEA;ISO;IBA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA;ISO] [GO:0051096
"positive regulation of helicase activity" evidence=IEA;ISO]
[GO:0003690 "double-stranded DNA binding" evidence=ISO] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=ISO]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
RGD:620786 GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0042493
GO:GO:0000287 GO:GO:0003684 GO:GO:0001701 GO:GO:0043524
GO:GO:0007050 GO:GO:0043531 GO:GO:0007283 GO:GO:0006119
GO:GO:0008584 GO:GO:0019237 GO:GO:0014070 GO:GO:0003697
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 HOGENOM:HOG000196498
KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 CTD:4436
HOVERGEN:HBG006399 OrthoDB:EOG4D26P5 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:X93591
IPI:IPI00211849 PIR:JC6184 RefSeq:NP_112320.1 UniGene:Rn.3174
ProteinModelPortal:P54275 SMR:P54275 STRING:P54275
PhosphoSite:P54275 PRIDE:P54275 GeneID:81709 KEGG:rno:81709
UCSC:RGD:620786 InParanoid:P54275 NextBio:615336
ArrayExpress:P54275 Genevestigator:P54275
GermOnline:ENSRNOG00000015796 Uniprot:P54275
Length = 933
Score = 249 (92.7 bits), Expect = 1.4e-17, P = 1.4e-17
Identities = 61/201 (30%), Positives = 108/201 (53%)
Query: 341 VPIDIKVECETRVV-VITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
+P D+ E + ++ +ITGPN GGK+ ++ G+ LM++ G ++P ++ + D IL
Sbjct: 651 IPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES-AEVSIVDCIL 709
Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
A +G S + +STF + IL +++SL++IDE+G GT +G LA +I +Y
Sbjct: 710 ARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEY 769
Query: 460 LRDRVG-LAVVTTHYADLSCLKDKDTRFENA-ATEFSLE-TLRPTYRILWGSTGDSNALN 516
+ +G + TH+ +L+ L + N T + E TL Y++ G S ++
Sbjct: 770 IATNIGAFCMFATHFHELTALASQIPTVNNLHVTALTTEETLTMLYQVKTGVCDQSFGIH 829
Query: 517 IAKSIGFDRKIIQRA-QKLVE 536
+A+ F R +I+ A QK +E
Sbjct: 830 VAELANFPRHVIECAKQKALE 850
>UNIPROTKB|F1LXQ9 [details] [associations]
symbol:Msh3 "Protein Msh3" species:10116 "Rattus
norvegicus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 RGD:1563954 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 IPI:IPI00950406
Ensembl:ENSRNOT00000067613 ArrayExpress:F1LXQ9 Uniprot:F1LXQ9
Length = 266
Score = 195 (73.7 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 45/134 (33%), Positives = 79/134 (58%)
Query: 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADI--GDHQSLE 409
RV++ITGPN GGK++ +K + L +M++ G Y+PA+ + D I G ++
Sbjct: 7 RVMIITGPNMGGKSSYIKQVALVVIMAQIGSYVPAEE-ATIGIVDGIFTRQRRGAADNIY 65
Query: 410 QNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY-LRDRVGLAV 468
+ STF ++ +I++ ++ SLV++DE+G GT +G+A+A + L+Y +RD L +
Sbjct: 66 KGRSTFMEELTDTAEIIQKATQRSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTL 125
Query: 469 VTTHYADLSCLKDK 482
THY + C +K
Sbjct: 126 FVTHYPPV-CELEK 138
Score = 51 (23.0 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 502 YRILWGSTGDSNALNIAKSIGFDRKIIQRA 531
Y+I G S LN+AK R+I+Q+A
Sbjct: 176 YQITRGIAARSYGLNVAKLADVPREILQKA 205
>ASPGD|ASPL0000012704 [details] [associations]
symbol:AN3749 species:162425 "Emericella nidulans"
[GO:0061500 "gene conversion at mating-type locus, termination of
copy-synthesis" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 EMBL:BN001302
EMBL:AACD01000061 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 HSSP:P23909 GO:GO:0000735
HOGENOM:HOG000029776 KO:K08736 OrthoDB:EOG42NN7M RefSeq:XP_661353.1
STRING:Q5B6T1 GeneID:2873172 KEGG:ani:AN3749.2 Uniprot:Q5B6T1
Length = 1105
Score = 249 (92.7 bits), Expect = 1.8e-17, P = 1.8e-17
Identities = 70/219 (31%), Positives = 112/219 (51%)
Query: 338 DFPVPIDIKVEC-ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFD 396
D VP DI ++ +TR +++TGPN GGK++ ++ + L ++M + G Y+PA+ +L D
Sbjct: 856 DSYVPNDINLDSSKTRALLVTGPNMGGKSSYVRQVALIAIMGQIGSYVPAQA-AKLGMLD 914
Query: 397 LILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSI 456
+ +G ++ STF +S DIL+ + SLV++DE+G GT +GVA+A ++
Sbjct: 915 AVFTRMGAFDNMLAGESTFMVELSETADILKQATPRSLVILDELGRGTSTHDGVAIAQAV 974
Query: 457 LQYL-RDRVGLAVVTTHYADLSCLKDK--DTRFENAATEFSL------ETLRPTYRILWG 507
L Y+ R L + THY LS + D N FS E + Y I G
Sbjct: 975 LDYMVRSIRSLTLFITHYQHLSAMVHSFPDGELRNVHMRFSESGTGADEDITFLYEIGEG 1034
Query: 508 STGDSNALNIAKSIGFDRKIIQRA-QK---LVERLRPER 542
S LN+A+ +++ A QK L E++R R
Sbjct: 1035 VAHRSYGLNVARLANLPAPLLEMAKQKSAELEEKIRRRR 1073
>UNIPROTKB|Q5B6T1 [details] [associations]
symbol:msh3 "DNA mismatch repair protein msh3"
species:227321 "Aspergillus nidulans FGSC A4" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
EMBL:BN001302 EMBL:AACD01000061 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HSSP:P23909 GO:GO:0000735
HOGENOM:HOG000029776 KO:K08736 OrthoDB:EOG42NN7M RefSeq:XP_661353.1
STRING:Q5B6T1 GeneID:2873172 KEGG:ani:AN3749.2 Uniprot:Q5B6T1
Length = 1105
Score = 249 (92.7 bits), Expect = 1.8e-17, P = 1.8e-17
Identities = 70/219 (31%), Positives = 112/219 (51%)
Query: 338 DFPVPIDIKVEC-ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFD 396
D VP DI ++ +TR +++TGPN GGK++ ++ + L ++M + G Y+PA+ +L D
Sbjct: 856 DSYVPNDINLDSSKTRALLVTGPNMGGKSSYVRQVALIAIMGQIGSYVPAQA-AKLGMLD 914
Query: 397 LILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSI 456
+ +G ++ STF +S DIL+ + SLV++DE+G GT +GVA+A ++
Sbjct: 915 AVFTRMGAFDNMLAGESTFMVELSETADILKQATPRSLVILDELGRGTSTHDGVAIAQAV 974
Query: 457 LQYL-RDRVGLAVVTTHYADLSCLKDK--DTRFENAATEFSL------ETLRPTYRILWG 507
L Y+ R L + THY LS + D N FS E + Y I G
Sbjct: 975 LDYMVRSIRSLTLFITHYQHLSAMVHSFPDGELRNVHMRFSESGTGADEDITFLYEIGEG 1034
Query: 508 STGDSNALNIAKSIGFDRKIIQRA-QK---LVERLRPER 542
S LN+A+ +++ A QK L E++R R
Sbjct: 1035 VAHRSYGLNVARLANLPAPLLEMAKQKSAELEEKIRRRR 1073
>UNIPROTKB|Q8A334 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:226186 "Bacteroides thetaiotaomicron VPI-5482" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:AE015928 GenomeReviews:AE015928_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_812033.1
ProteinModelPortal:Q8A334 GeneID:1075929 KEGG:bth:BT_3121
PATRIC:21061245 BioCyc:BTHE226186:GJXV-3185-MONOMER Uniprot:Q8A334
Length = 862
Score = 238 (88.8 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 59/226 (26%), Positives = 119/226 (52%)
Query: 344 DIKVECETR-VVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADI 402
D+ ++ ++ +++ITGPN GK+A ++ L +L+++ G ++PA++ + D I +
Sbjct: 593 DVMLDSASQQIIIITGPNMAGKSALLRQTALITLLAQIGSFVPAES-AHIGLVDKIFTRV 651
Query: 403 GDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD 462
G ++ STF ++ DIL VS SLVL DE+G GT +G+++A +I++Y+ +
Sbjct: 652 GASDNISVGESTFMVEMNEAADILNNVSSRSLVLFDELGRGTSTYDGISIAWAIVEYIHE 711
Query: 463 RVGLAVVT---THYADLSCLKDKDTRFENAATEFSLETLRPTY--RILWGSTGDSNALNI 517
T THY +L+ ++ R +N + + ++ G + S +++
Sbjct: 712 HPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKVIFLRKLERGGSEHSFGIHV 771
Query: 518 AKSIGFDRKIIQRAQKLVERLRPE-RQQHRKSELYQSLMEERRKLE 562
AK G + I++RA ++++L + RQQ + + E R ++
Sbjct: 772 AKMAGMPKSIVKRANTILKQLESDNRQQGISGKPLTEVSENRSGMQ 817
Score = 57 (25.1 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 26/101 (25%), Positives = 46/101 (45%)
Query: 41 LSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLL 100
L I D+ I++ G++ SP E+ ++ L+A+ + + EA D SL R L
Sbjct: 333 LHLIGDLERIISKVAVGRV-SPREVVQLKVALQAIEPIKQACLEA---DNASLNRIGEQL 388
Query: 101 ELLKNCN--FLTELEEKIGFCIDCKLLIILDRASEDLELIR 139
L + E+ I+ K +I D +E+L+ +R
Sbjct: 389 NLCISIRDRIAKEINNDPPLLIN-KGGVIKDGVNEELDELR 428
>UNIPROTKB|F1NV33 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0019237 "centromeric DNA binding" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0030183 "B cell
differentiation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032143 "single thymine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032405 "MutLalpha complex binding" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IEA] [GO:0051096 "positive
regulation of helicase activity" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006915 GO:GO:0000287 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0016887 GO:GO:0006119 GO:GO:0006298
GO:GO:0019237 GO:GO:0003697 GO:GO:0006302 GO:GO:0010165
GO:GO:0010224 GO:GO:0043570 GO:GO:0045910 GO:GO:0006301
GO:GO:0031573 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0019724 GO:GO:0032137 GO:GO:0032301 GO:GO:0032302
GeneTree:ENSGT00550000074867 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:AADN02036255
IPI:IPI00821163 Ensembl:ENSGALT00000014573 ArrayExpress:F1NV33
Uniprot:F1NV33
Length = 861
Score = 248 (92.4 bits), Expect = 3.1e-17, Sum P(2) = 3.1e-17
Identities = 62/201 (30%), Positives = 105/201 (52%)
Query: 341 VPIDIKVECETRVV-VITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
+P D+ E ++ +ITGPN GGK+ ++ G+ LM++ G ++P N + D IL
Sbjct: 579 IPNDVTFEKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC-NSAEITIVDCIL 637
Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
A +G S + +STF + IL S SL++IDE+G GT +G LA +I +Y
Sbjct: 638 ARVGAGDSQLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEY 697
Query: 460 LRDRV-GLAVVTTHYADLSCLKDKDTRFENA-ATEF-SLETLRPTYRILWGSTGDSNALN 516
+ ++ + TH+ +L+ L D+ N T S +TL YR+ G S ++
Sbjct: 698 IASKICAFCMFATHFHELTALADQVPTVNNLHVTALTSDDTLTMLYRVKAGVCDQSFGIH 757
Query: 517 IAKSIGFDRKIIQRA-QKLVE 536
+A+ F + +I+ A +K +E
Sbjct: 758 VAELAAFPKHVIESAREKALE 778
Score = 45 (20.9 bits), Expect = 3.1e-17, Sum P(2) = 3.1e-17
Identities = 25/101 (24%), Positives = 42/101 (41%)
Query: 17 LEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVS--GQLLSPSEICAVRRTLRA 74
L + L N AL + QS + + + +AG+LN + GQ L I ++ L
Sbjct: 224 LSQYMVLDNAAVQALNLFQSSVENANNTQSLAGLLNKCRTPQGQRLVNQWI---KQPLMD 280
Query: 75 VNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEK 115
N + ++L D+ R +LL+ L L +K
Sbjct: 281 KNRIEERLNLVEAFVVDTELRQGLQEDLLRRFPDLNRLAKK 321
>UNIPROTKB|F1NFH4 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0019237 "centromeric DNA binding" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0030183 "B cell
differentiation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032143 "single thymine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032405 "MutLalpha complex binding" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IEA] [GO:0051096 "positive
regulation of helicase activity" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006915 GO:GO:0000287 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0016887 GO:GO:0006119 GO:GO:0006298
GO:GO:0019237 GO:GO:0003697 GO:GO:0006302 GO:GO:0010165
GO:GO:0010224 GO:GO:0043570 GO:GO:0045910 GO:GO:0006301
GO:GO:0031573 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0019724 GO:GO:0032137 GO:GO:0032301 OMA:WAISEHI GO:GO:0032302
GeneTree:ENSGT00550000074867 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:AADN02036255
IPI:IPI00601005 Ensembl:ENSGALT00000039639 ArrayExpress:F1NFH4
Uniprot:F1NFH4
Length = 866
Score = 248 (92.4 bits), Expect = 3.2e-17, Sum P(2) = 3.2e-17
Identities = 62/201 (30%), Positives = 105/201 (52%)
Query: 341 VPIDIKVECETRVV-VITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
+P D+ E ++ +ITGPN GGK+ ++ G+ LM++ G ++P N + D IL
Sbjct: 584 IPNDVTFEKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC-NSAEITIVDCIL 642
Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
A +G S + +STF + IL S SL++IDE+G GT +G LA +I +Y
Sbjct: 643 ARVGAGDSQLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEY 702
Query: 460 LRDRV-GLAVVTTHYADLSCLKDKDTRFENA-ATEF-SLETLRPTYRILWGSTGDSNALN 516
+ ++ + TH+ +L+ L D+ N T S +TL YR+ G S ++
Sbjct: 703 IASKICAFCMFATHFHELTALADQVPTVNNLHVTALTSDDTLTMLYRVKAGVCDQSFGIH 762
Query: 517 IAKSIGFDRKIIQRA-QKLVE 536
+A+ F + +I+ A +K +E
Sbjct: 763 VAELAAFPKHVIESAREKALE 783
Score = 45 (20.9 bits), Expect = 3.2e-17, Sum P(2) = 3.2e-17
Identities = 25/101 (24%), Positives = 42/101 (41%)
Query: 17 LEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVS--GQLLSPSEICAVRRTLRA 74
L + L N AL + QS + + + +AG+LN + GQ L I ++ L
Sbjct: 229 LSQYMVLDNAAVQALNLFQSSVENANNTQSLAGLLNKCRTPQGQRLVNQWI---KQPLMD 285
Query: 75 VNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEK 115
N + ++L D+ R +LL+ L L +K
Sbjct: 286 KNRIEERLNLVEAFVVDTELRQGLQEDLLRRFPDLNRLAKK 326
>TIGR_CMR|SO_3431 [details] [associations]
symbol:SO_3431 "DNA mismatch repair protein MutS"
species:211586 "Shewanella oneidensis MR-1" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_718984.1
ProteinModelPortal:Q8EBR9 SMR:Q8EBR9 GeneID:1171106
KEGG:son:SO_3431 PATRIC:23526550 Uniprot:Q8EBR9
Length = 856
Score = 245 (91.3 bits), Expect = 3.4e-17, P = 3.4e-17
Identities = 69/237 (29%), Positives = 123/237 (51%)
Query: 336 ISDFP-VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW 394
+S P + + + + R++++TGPN GGK+ M+ + L +LM+ G ++PA+ P
Sbjct: 595 VSQTPFIANPVTLHNQRRMLIVTGPNMGGKSTYMRQVALITLMAHIGCFVPAERATIGP- 653
Query: 395 FDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALAT 454
D I IG L STF ++ +IL + +SLVL+DEIG GT +G++LA
Sbjct: 654 IDRIFTRIGASDDLASGRSTFMVEMTETANILHNATAQSLVLMDEIGRGTSTYDGLSLAW 713
Query: 455 SILQYLRDRVG-LAVVTTHYADLSCLKDKDTRFENA---ATEFSLETLRPTYRILWGSTG 510
S +YL +VG + + THY +L+ L + + N A E +T+ + + G+
Sbjct: 714 SAAEYLAQQVGAMTLFATHYFELTQLPELMSGVYNVHLDAIEHE-DTIAFMHAVQEGAAS 772
Query: 511 DSNALNIAKSIGFDRKIIQRAQKLVERL--RPERQQHRKSELYQSLMEERRKLESQA 565
S L +A G ++I+ A+ + +L R + + K+ + Q+L+ +E+ A
Sbjct: 773 KSYGLQVAALAGVPARVIKAAKHKLHQLESRDHQVEGTKTPI-QTLLALPEPVENPA 828
>UNIPROTKB|Q7RQK0 [details] [associations]
symbol:PY01096 "MutS homolog 2-related" species:73239
"Plasmodium yoelii yoelii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000403 "Y-form DNA binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 EMBL:AABL01000289 RefSeq:XP_728672.1
ProteinModelPortal:Q7RQK0 STRING:Q7RQK0 GeneID:3801212
KEGG:pyo:PY01096 EuPathDB:PlasmoDB:PY01096 Uniprot:Q7RQK0
Length = 853
Score = 251 (93.4 bits), Expect = 4.7e-17, Sum P(2) = 4.7e-17
Identities = 71/285 (24%), Positives = 145/285 (50%)
Query: 336 ISDFPVPIDIKVECET-RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW 394
I +F +P DI ++ E R+ +ITGPN GGK+ ++ + + SLM+ G ++P+ + ++P
Sbjct: 573 IKNF-IPNDIHMDKENNRLNIITGPNMGGKSTYIRQIAIISLMAHIGCFVPS-TYAKIPI 630
Query: 395 FDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALAT 454
F I+ IG + +STF + + I++ ++LV+IDE+G GT EG ++
Sbjct: 631 FSQIMCRIGSSDIQLKGISTFFSEMIEVSAIIKNADSDTLVIIDELGRGTSTYEGFGISW 690
Query: 455 SILQYLRDRVG-LAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPT----YRILWGST 509
S+ YL + + L + TH+ ++S L+D+ N ++ + Y I G
Sbjct: 691 SVANYLLNNIKCLCLFATHFHEISNLEDEHAAVSNNHVSAKIDEAKKKISFLYEIKKGFA 750
Query: 510 GDSNALNIAKSIGFDRKIIQRA-QKLVERLRPERQQHRKSELYQSLMEERRKLE-SQART 567
S +++A+ +K+I ++ +K E E + + K++L + + +E +A+T
Sbjct: 751 DKSYGVHVAQIAKLPQKVIDKSFEKSKELESIENKHYFKNKLKSN--NDNNSIEYDKAKT 808
Query: 568 AA--SLHAEIMDLYREDSTSASISVYRYQFAVTSTLSKVD-FDAI 609
A + ++++ ++ IS+++ L K D F+++
Sbjct: 809 EMHNKCEAYLKEIFKANNEQEFISLFKKNKGFLVELFKNDNFNSL 853
Score = 40 (19.1 bits), Expect = 4.7e-17, Sum P(2) = 4.7e-17
Identities = 32/129 (24%), Positives = 58/129 (44%)
Query: 113 EEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKK--VAAQIFQAGGI-DKP 169
E+KI +D ++ D+A + I+ E R + +LD ++KK +A I + + D
Sbjct: 227 EKKINQRLDMVEIMNDDQALRSM--IQGEYLRKVCDLDLIIKKLKIANNIVKNNNMSDNH 284
Query: 170 LITKRRSRMCVGIKASHKYLLPDGIAL--NVSSSGATYFMEPKGAVEFNNMEVRLSNSEI 227
+ RS G +++K + D + L V +S Y E+NN + + +
Sbjct: 285 GAKQNRS---FG-NSNNKCTIEDLVKLYDTVIASKNIYH----ALDEYNNGTQKKNTKKT 336
Query: 228 AEETAILSL 236
EE I+ L
Sbjct: 337 LEENFIIPL 345
>WB|WBGene00003418 [details] [associations]
symbol:msh-2 species:6239 "Caenorhabditis elegans"
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0032301
"MutSalpha complex" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0032302 "MutSbeta complex" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IMP] [GO:0042771 "intrinsic apoptotic signaling pathway in
response to DNA damage by p53 class mediator" evidence=IMP]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05190
Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0042771 GO:GO:0003684
GO:GO:0006302 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
HSSP:Q56215 GO:GO:0032301 GO:GO:0032138 KO:K08735 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 GeneTree:ENSGT00550000074867
OMA:HINERLD EMBL:FO080998 PIR:C87740 RefSeq:NP_491202.1
ProteinModelPortal:Q9TXR4 SMR:Q9TXR4 IntAct:Q9TXR4 MINT:MINT-227660
STRING:Q9TXR4 PaxDb:Q9TXR4 EnsemblMetazoa:H26D21.2.1
EnsemblMetazoa:H26D21.2.2 EnsemblMetazoa:H26D21.2.3 GeneID:171938
KEGG:cel:CELE_H26D21.2 UCSC:H26D21.2 CTD:171938 WormBase:H26D21.2
InParanoid:Q9TXR4 NextBio:873327 Uniprot:Q9TXR4
Length = 849
Score = 243 (90.6 bits), Expect = 5.5e-17, P = 5.5e-17
Identities = 59/225 (26%), Positives = 117/225 (52%)
Query: 334 KGISDFP-VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRL 392
+G S+ P +P D+ ++ + R++++TG N GGK+ +++ L+ L+++ G ++P + +
Sbjct: 615 EGNSEKPFIPNDVVLD-KCRLIILTGANMGGKSTYLRSAALSILLAQIGSFVPCSS-ATI 672
Query: 393 PWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVAL 452
D I +G Q +STF + IL+ ++ S V+IDE+G GT +G +
Sbjct: 673 SVVDGIFTRVGASDKQSQGISTFMAEMLDCSAILQRATKNSFVVIDELGRGTSTFDGFGI 732
Query: 453 ATSILQYLRDRVG-LAVVTTHYADLSCLKDKDTRFE-NAATEFSLETLRPTYRILWGSTG 510
A++I Q + +R+ L++ TH+ ++ L ++ + + Y++ G
Sbjct: 733 ASAIAQDILNRIQCLSIFATHFHEMGKLAEQPGAVALQMGVQIENNEIHMLYKVFEGVAQ 792
Query: 511 DSNALNIAKSIGFDRKIIQRAQKLVERLRPER--QQHRKSELYQS 553
S L +AK +G D +I +A +L+E L + +K EL +S
Sbjct: 793 CSFGLQVAKMVGIDENVINKAAQLLEGLEKKLVIDSKKKKELLES 837
>UNIPROTKB|Q9TXR4 [details] [associations]
symbol:msh-2 "Protein MSH-2" species:6239 "Caenorhabditis
elegans" [GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] [GO:0032302 "MutSbeta complex"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IBA] [GO:0010224 "response to UV-B" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0006311 "meiotic
gene conversion" evidence=IBA] [GO:0006302 "double-strand break
repair" evidence=IBA] [GO:0006301 "postreplication repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0042771 GO:GO:0003684 GO:GO:0006302
GO:GO:0010165 GO:GO:0010224 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0031573
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 HSSP:Q56215 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GeneTree:ENSGT00550000074867 OMA:HINERLD EMBL:FO080998 PIR:C87740
RefSeq:NP_491202.1 ProteinModelPortal:Q9TXR4 SMR:Q9TXR4
IntAct:Q9TXR4 MINT:MINT-227660 STRING:Q9TXR4 PaxDb:Q9TXR4
EnsemblMetazoa:H26D21.2.1 EnsemblMetazoa:H26D21.2.2
EnsemblMetazoa:H26D21.2.3 GeneID:171938 KEGG:cel:CELE_H26D21.2
UCSC:H26D21.2 CTD:171938 WormBase:H26D21.2 InParanoid:Q9TXR4
NextBio:873327 Uniprot:Q9TXR4
Length = 849
Score = 243 (90.6 bits), Expect = 5.5e-17, P = 5.5e-17
Identities = 59/225 (26%), Positives = 117/225 (52%)
Query: 334 KGISDFP-VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRL 392
+G S+ P +P D+ ++ + R++++TG N GGK+ +++ L+ L+++ G ++P + +
Sbjct: 615 EGNSEKPFIPNDVVLD-KCRLIILTGANMGGKSTYLRSAALSILLAQIGSFVPCSS-ATI 672
Query: 393 PWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVAL 452
D I +G Q +STF + IL+ ++ S V+IDE+G GT +G +
Sbjct: 673 SVVDGIFTRVGASDKQSQGISTFMAEMLDCSAILQRATKNSFVVIDELGRGTSTFDGFGI 732
Query: 453 ATSILQYLRDRVG-LAVVTTHYADLSCLKDKDTRFE-NAATEFSLETLRPTYRILWGSTG 510
A++I Q + +R+ L++ TH+ ++ L ++ + + Y++ G
Sbjct: 733 ASAIAQDILNRIQCLSIFATHFHEMGKLAEQPGAVALQMGVQIENNEIHMLYKVFEGVAQ 792
Query: 511 DSNALNIAKSIGFDRKIIQRAQKLVERLRPER--QQHRKSELYQS 553
S L +AK +G D +I +A +L+E L + +K EL +S
Sbjct: 793 CSFGLQVAKMVGIDENVINKAAQLLEGLEKKLVIDSKKKKELLES 837
>DICTYBASE|DDB_G0275809 [details] [associations]
symbol:msh2 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0032302 "MutSbeta complex"
evidence=IEA;ISS;IBA] [GO:0032301 "MutSalpha complex"
evidence=IEA;ISS;IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;ISS] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0042803 "protein
homodimerization activity" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0006301 "postreplication repair"
evidence=ISS;IBA] [GO:0006281 "DNA repair" evidence=IEA;ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0045128
"negative regulation of reciprocal meiotic recombination"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF05188 Pfam:PF05190
Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 dictyBase:DDB_G0275809 GO:GO:0005524 GO:GO:0042803
GO:GO:0003684 GenomeReviews:CM000151_GR EMBL:AAFI02000013
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 KO:K08735 OMA:WAISEHI
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 RefSeq:XP_643399.1
HSSP:P23909 ProteinModelPortal:Q553L4 STRING:Q553L4 PRIDE:Q553L4
EnsemblProtists:DDB0229897 GeneID:8619985 KEGG:ddi:DDB_G0275809
ProtClustDB:CLSZ2430933 Uniprot:Q553L4
Length = 937
Score = 242 (90.2 bits), Expect = 7.2e-17, Sum P(2) = 7.2e-17
Identities = 62/239 (25%), Positives = 121/239 (50%)
Query: 350 ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLE 409
+++ +ITGPN GGK+ ++ +GL LM++ G ++PA+ + D IL+ +G S
Sbjct: 699 QSQFQIITGPNMGGKSTFIRQVGLIVLMAQIGCFVPAQK-ATIAVVDCILSRVGAGDSQL 757
Query: 410 QNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG-LAV 468
+ +STF + IL++ ++ SL++IDE+G GT +G LA I +Y+ +++G +
Sbjct: 758 RGVSTFMAEMLETSYILKVATKNSLIIIDELGRGTSTYDGFGLAWGIAEYICNQIGGFCL 817
Query: 469 VTTHYADLSCLKDKDTRFENAATEFSLE--TLRPTYRILWGSTGDSNALNIAKSIGFDRK 526
TH+ +L+ L D +N S + T Y++ G S +++A F +
Sbjct: 818 FATHFHELTILSDLLPMVKNLHVSASTQNNTFTLLYKVEQGPCDQSFGIHVAILANFPSQ 877
Query: 527 IIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLE---SQARTAASLHAEIMDLYRED 582
+I+ A++ + L K + +EE +++ + + SL +++ Y D
Sbjct: 878 VIENAKQKAKELESFESNTLKQN-HNKFLEEFKEINFNSNDVEKSLSLVNSLLNKYSID 935
Score = 49 (22.3 bits), Expect = 7.2e-17, Sum P(2) = 7.2e-17
Identities = 21/69 (30%), Positives = 32/69 (46%)
Query: 92 SLQRYSPLLELLKNCNFLTELEEKIG----FCIDCKLLIILDRASEDLE-LIRAERKRNM 146
SL +S + + L NF+ LE I FC + I LD A++ E +IR+ +
Sbjct: 454 SLNNHSSIHQELIKVNFIESLESIISDFAKFCAMVEKTIDLDLANDKHEYVIRSSFDETL 513
Query: 147 ENLDSLLKK 155
+ LKK
Sbjct: 514 RGIQ--LKK 520
>UNIPROTKB|F1PM37 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032301 "MutSalpha complex" evidence=IEA] [GO:0030983
"mismatched DNA binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GO:GO:0032301 KO:K08735 OMA:WAISEHI GO:GO:0032302 CTD:4436
GeneTree:ENSGT00550000074867 EMBL:AAEX03007498 EMBL:AAEX03007499
EMBL:AAEX03007500 RefSeq:XP_538482.2 Ensembl:ENSCAFT00000004191
GeneID:494002 KEGG:cfa:494002 Uniprot:F1PM37
Length = 934
Score = 251 (93.4 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 61/201 (30%), Positives = 110/201 (54%)
Query: 341 VPIDIKVECETRVV-VITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
+P D+ E + ++ +ITGPN GGK+ ++ G+ LM++ G ++P ++ + D IL
Sbjct: 651 IPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES-AEVSIVDCIL 709
Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
A +G S + +STF + IL +++SL++IDE+G GT +G LA +I +Y
Sbjct: 710 ARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEY 769
Query: 460 LRDRVG-LAVVTTHYADLSCLKDKDTRFENA-ATEFSLE-TLRPTYRILWGSTGDSNALN 516
+ ++G + TH+ +L+ L ++ N T + E TL Y++ G S ++
Sbjct: 770 IATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIH 829
Query: 517 IAKSIGFDRKIIQRA-QKLVE 536
+A+ F R +I+ A QK +E
Sbjct: 830 VAELANFPRHVIECAKQKALE 850
Score = 38 (18.4 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 40 DLSTIEDIAGILNSAVSGQ 58
D+ST + G+ S V GQ
Sbjct: 140 DMSTSIGVVGVKMSTVDGQ 158
>UNIPROTKB|Q3MHE4 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9913
"Bos taurus" [GO:0045190 "isotype switching" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] [GO:0042771 "intrinsic apoptotic signaling
pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0032301 "MutSalpha complex" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IBA] [GO:0010224
"response to UV-B" evidence=IBA] [GO:0010165 "response to X-ray"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0006302 "double-strand break repair" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0051096 "positive regulation of
helicase activity" evidence=IEA] [GO:0043531 "ADP binding"
evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0032405 "MutLalpha complex binding"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032181 "dinucleotide repeat insertion binding"
evidence=IEA] [GO:0032143 "single thymine insertion binding"
evidence=IEA] [GO:0032142 "single guanine insertion binding"
evidence=IEA] [GO:0030183 "B cell differentiation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0008584 "male gonad
development" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0006119
"oxidative phosphorylation" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0000287
GO:GO:0003684 GO:GO:0001701 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0006119 GO:GO:0008584 GO:GO:0019237
GO:GO:0003697 GO:GO:0007281 GO:GO:0030183 GO:GO:0006302
GO:GO:0045190 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 EMBL:BC105268 IPI:IPI00904469
RefSeq:NP_001029756.1 UniGene:Bt.635 ProteinModelPortal:Q3MHE4
SMR:Q3MHE4 STRING:Q3MHE4 PRIDE:Q3MHE4 Ensembl:ENSBTAT00000003556
GeneID:533115 KEGG:bta:533115 CTD:4436 GeneTree:ENSGT00550000074867
HOVERGEN:HBG006399 OrthoDB:EOG4D26P5 NextBio:20875918 GO:GO:0032181
GO:GO:0032357 GO:GO:0032142 GO:GO:0032143 GO:GO:0051096
Uniprot:Q3MHE4
Length = 934
Score = 249 (92.7 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 61/201 (30%), Positives = 109/201 (54%)
Query: 341 VPIDIKVECETRVV-VITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
+P D+ E + ++ +ITGPN GGK+ ++ G+ LM++ G ++P + + D IL
Sbjct: 651 IPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVVVLMAQIGCFVPCE-WAEVSIVDCIL 709
Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
A +G S + +STF + IL +++SL++IDE+G GT +G LA +I +Y
Sbjct: 710 ARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEY 769
Query: 460 LRDRVG-LAVVTTHYADLSCLKDKDTRFENA-ATEFSLE-TLRPTYRILWGSTGDSNALN 516
+ ++G + TH+ +L+ L ++ N T + E TL Y++ G S ++
Sbjct: 770 IATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIH 829
Query: 517 IAKSIGFDRKIIQRA-QKLVE 536
+A+ F R +I+ A QK +E
Sbjct: 830 VAELANFPRHVIECAKQKALE 850
Score = 39 (18.8 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 22/88 (25%), Positives = 37/88 (42%)
Query: 30 ALAMMQSQPLDLSTIEDIAGILNSAVS--GQLLSPSEICAVRRTLRAVNNVWKKLTEAAE 87
AL + Q D S + +A +LN + GQ L I ++ L N + ++L
Sbjct: 309 ALNLFQGSVEDTSGSQSLAALLNKCKTPQGQRLVNQWI---KQPLMDKNRIEERLNLVEA 365
Query: 88 LDGDSLQRYSPLLELLKNCNFLTELEEK 115
D+ R + +LL+ L L +K
Sbjct: 366 FVEDAELRQNLQEDLLRRFPDLNRLAKK 393
>MGI|MGI:101816 [details] [associations]
symbol:Msh2 "mutS homolog 2 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0001701 "in utero embryonic development"
evidence=IGI] [GO:0002204 "somatic recombination of immunoglobulin
genes involved in immune response" evidence=IGI] [GO:0003677 "DNA
binding" evidence=ISO;IMP] [GO:0003684 "damaged DNA binding"
evidence=IMP] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IC;IDA] [GO:0006119 "oxidative
phosphorylation" evidence=IMP] [GO:0006200 "ATP catabolic process"
evidence=ISO;IMP] [GO:0006281 "DNA repair" evidence=ISO;IMP]
[GO:0006298 "mismatch repair" evidence=IGI;ISO;IDA;IMP] [GO:0006301
"postreplication repair" evidence=ISO;IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0006311 "meiotic
gene conversion" evidence=IBA] [GO:0006915 "apoptotic process"
evidence=IGI;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0008584 "male gonad development" evidence=IMP]
[GO:0010165 "response to X-ray" evidence=IMP] [GO:0010224 "response
to UV-B" evidence=IMP] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IGI;IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IGI;IMP]
[GO:0016887 "ATPase activity" evidence=IMP] [GO:0019237
"centromeric DNA binding" evidence=IDA] [GO:0019724 "B cell
mediated immunity" evidence=IMP] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0030183 "B cell differentiation" evidence=IMP] [GO:0030983
"mismatched DNA binding" evidence=IMP] [GO:0031573 "intra-S DNA
damage checkpoint" evidence=IGI] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO;IDA] [GO:0032138 "single base
insertion or deletion binding" evidence=IBA] [GO:0032301 "MutSalpha
complex" evidence=ISO;IDA] [GO:0032302 "MutSbeta complex"
evidence=ISO;IBA] [GO:0042771 "intrinsic apoptotic signaling
pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=IMP] [GO:0043570 "maintenance of DNA
repeat elements" evidence=ISO;IBA] [GO:0045128 "negative regulation
of reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=IMP] [GO:0045910 "negative regulation
of DNA recombination" evidence=ISO;IMP] [GO:0051096 "positive
regulation of helicase activity" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 MGI:MGI:101816
GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0042493
GO:GO:0000287 GO:GO:0003684 GO:GO:0001701 GO:GO:0043524
GO:GO:0007050 GO:GO:0043531 GO:GO:0007283 GO:GO:0006119
GO:GO:0008584 GO:GO:0019237 GO:GO:0014070 GO:GO:0003697
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 CTD:4436 HOVERGEN:HBG006399
OrthoDB:EOG4D26P5 GO:GO:0032181 GO:GO:0032357 GO:GO:0032142
GO:GO:0032143 GO:GO:0051096 EMBL:X81143 EMBL:U21011 EMBL:BC047117
IPI:IPI00118158 PIR:S53608 RefSeq:NP_032654.1 UniGene:Mm.4619
ProteinModelPortal:P43247 SMR:P43247 IntAct:P43247 STRING:P43247
PhosphoSite:P43247 PaxDb:P43247 PRIDE:P43247
Ensembl:ENSMUST00000024967 GeneID:17685 KEGG:mmu:17685
InParanoid:P43247 NextBio:292252 Bgee:P43247 CleanEx:MM_MSH2
Genevestigator:P43247 GermOnline:ENSMUSG00000024151 Uniprot:P43247
Length = 935
Score = 246 (91.7 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 61/201 (30%), Positives = 108/201 (53%)
Query: 341 VPIDIKVECETRVV-VITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
+P D+ E + ++ +ITGPN GGK+ ++ G+ LM++ G ++P ++ + D IL
Sbjct: 651 IPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES-AEVSIVDCIL 709
Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
A +G S + +STF + IL +++SL++IDE+G GT +G LA +I Y
Sbjct: 710 ARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISDY 769
Query: 460 LRDRVG-LAVVTTHYADLSCLKDKDTRFENA-ATEFSLE-TLRPTYRILWGSTGDSNALN 516
+ ++G + TH+ +L+ L ++ N T + E TL Y++ G S ++
Sbjct: 770 IATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIH 829
Query: 517 IAKSIGFDRKIIQRA-QKLVE 536
+A+ F R +I A QK +E
Sbjct: 830 VAELANFPRHVIACAKQKALE 850
Score = 42 (19.8 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 23/88 (26%), Positives = 36/88 (40%)
Query: 30 ALAMMQSQPLDLSTIEDIAGILNSA--VSGQLLSPSEICAVRRTLRAVNNVWKKLTEAAE 87
AL + Q D + + +A +LN GQ L I ++ L N + ++L
Sbjct: 309 ALNLFQGSVEDTTGSQSLAALLNKCKTAQGQRLVNQWI---KQPLMDRNRIEERLNLVEA 365
Query: 88 LDGDSLQRYSPLLELLKNCNFLTELEEK 115
DS R S +LL+ L L +K
Sbjct: 366 FVEDSELRQSLQEDLLRRFPDLNRLAKK 393
>UNIPROTKB|Q8F496 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:189518 "Leptospira interrogans serovar Lai str. 56601"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300 OMA:HYFELTV
EMBL:AE010300 GenomeReviews:AE010300_GR KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:NP_712327.1 ProteinModelPortal:Q8F496
PaxDb:Q8F496 GeneID:1151489 KEGG:lil:LA_2146 PATRIC:22385139
BioCyc:LINT189518:GJBB-1740-MONOMER Uniprot:Q8F496
Length = 848
Score = 239 (89.2 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 73/262 (27%), Positives = 128/262 (48%)
Query: 321 DVENSEMTV--GSLSKGISDFPVPIDIKVECETRVV-VITGPNTGGKTASMKTLGLASLM 377
D+ +S V +L G +F +P + ++ + + + V+TGPN GK+ M+ + L ++
Sbjct: 567 DLSDSRHPVVEATLPPG-QEF-IPNSVYLDTQDKAIAVLTGPNMAGKSTFMRQIALNQIL 624
Query: 378 SKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLI 437
+ G ++PAK+ +LP D + IG +L STF + +IL + +SL+L
Sbjct: 625 FQIGAFVPAKS-AKLPIVDKLFTRIGAGDNLTAGESTFFVEMKETANILNHYTEDSLILF 683
Query: 438 DEIGSGTDPSEGVALATSILQYLRDRV--GLAVVTTHYADLSCLKDKDTRFENAATEFSL 495
DE+G GT +G+++A SIL+YL + THY +L+ L F L
Sbjct: 684 DEVGRGTSTYDGMSIAWSILEYLSSLSVRPKTIFATHYHELTELSRLGGIFN-----LYL 738
Query: 496 ETLRPTYRILW------GSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSE 549
ETL R+L+ G S + +AK G I++RA +L+ L ++++ + E
Sbjct: 739 ETLEKEDRVLFLRKVKVGKAKKSFGIYVAKIAGVPEPIVKRAAELLTDLESKKKEIKIQE 798
Query: 550 LYQSLMEERRKLESQARTAASL 571
+L E ++T S+
Sbjct: 799 AQPTLFTEPETKNFNSQTEESI 820
>UNIPROTKB|E9PHA6 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 EMBL:AC079775
SUPFAM:SSF48334 GO:GO:0032301 GO:GO:0032302 EMBL:AC138655
HGNC:HGNC:7325 ChiTaRS:MSH2 IPI:IPI00893933
ProteinModelPortal:E9PHA6 SMR:E9PHA6 Ensembl:ENST00000406134
UCSC:uc002rvz.3 ArrayExpress:E9PHA6 Bgee:E9PHA6 Uniprot:E9PHA6
Length = 921
Score = 249 (92.7 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 65/224 (29%), Positives = 119/224 (53%)
Query: 341 VPIDIKVECETRVV-VITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
+P D+ E + ++ +ITGPN GGK+ ++ G+ LM++ G ++P ++ + D IL
Sbjct: 651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES-AEVSIVDCIL 709
Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
A +G S + +STF + IL +++SL++IDE+G GT +G LA +I +Y
Sbjct: 710 ARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEY 769
Query: 460 LRDRVG-LAVVTTHYADLSCLKDKDTRFENA-ATEFSLE-TLRPTYRILWGSTGDSNALN 516
+ ++G + TH+ +L+ L ++ N T + E TL Y++ G S ++
Sbjct: 770 IATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIH 829
Query: 517 IAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRK 560
+A+ F + +I+ A++ L E Q +S+ Y +ME K
Sbjct: 830 VAELANFPKHVIECAKQKALELE-EFQYIGESQGYD-IMEPAAK 871
Score = 37 (18.1 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 40 DLSTIEDIAGILNSAVSGQ 58
D+S + G+ SAV GQ
Sbjct: 140 DMSASIGVVGVKMSAVDGQ 158
>UNIPROTKB|P43246 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9606
"Homo sapiens" [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0019237 "centromeric DNA binding"
evidence=IEA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=ISS;IBA] [GO:0010224
"response to UV-B" evidence=ISS;IBA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0042771
"intrinsic apoptotic signaling pathway in response to DNA damage by
p53 class mediator" evidence=IBA] [GO:0045128 "negative regulation
of reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=ISS;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0019901 "protein kinase binding" evidence=IPI]
[GO:0006298 "mismatch repair" evidence=IDA] [GO:0006301
"postreplication repair" evidence=IDA] [GO:0008022 "protein
C-terminus binding" evidence=IPI] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA;IMP] [GO:0032405
"MutLalpha complex binding" evidence=IDA] [GO:0032301 "MutSalpha
complex" evidence=IDA] [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0032302 "MutSbeta complex" evidence=IDA]
[GO:0030983 "mismatched DNA binding" evidence=IDA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IDA]
[GO:0032143 "single thymine insertion binding" evidence=IDA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0032142 "single guanine insertion binding" evidence=IDA]
[GO:0032357 "oxidized purine DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IMP] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0043531 "ADP binding" evidence=IDA] [GO:0000400
"four-way junction DNA binding" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0019724 "B cell
mediated immunity" evidence=ISS] [GO:0008584 "male gonad
development" evidence=ISS] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=ISS] [GO:0030183 "B cell
differentiation" evidence=ISS] [GO:0043524 "negative regulation of
neuron apoptotic process" evidence=ISS] [GO:0045910 "negative
regulation of DNA recombination" evidence=ISS;IDA] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0051096 "positive regulation of helicase
activity" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=IDA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0008340
GO:GO:0042803 GO:GO:0042771 GO:GO:0042493 GO:GO:0003684
GO:GO:0001701 GO:GO:0043524 GO:GO:0007050 GO:GO:0007283
GO:GO:0006119 GO:GO:0008584 GO:GO:0019237 GO:GO:0014070
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 Orphanet:144
GO:GO:0006301 GO:GO:0031573 MIM:608089 GO:GO:0008094 GO:GO:0006311
GO:GO:0016446 EMBL:AC079775 eggNOG:COG0249 SUPFAM:SSF48334
MIM:158320 Orphanet:587 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 CTD:4436 HOVERGEN:HBG006399
OrthoDB:EOG4D26P5 GO:GO:0051096 EMBL:U03911 EMBL:U04045 EMBL:U41221
EMBL:U41206 EMBL:U41207 EMBL:U41208 EMBL:U41210 EMBL:U41211
EMBL:U41212 EMBL:U41213 EMBL:U41214 EMBL:U41215 EMBL:U41216
EMBL:U41217 EMBL:U41218 EMBL:U41219 EMBL:U41220 EMBL:L47583
EMBL:L47582 EMBL:L47581 EMBL:AY601851 EMBL:AK304496 EMBL:BX649122
EMBL:AC138655 EMBL:BC021566 EMBL:AF066081 IPI:IPI00017303
IPI:IPI01014700 PIR:I64819 RefSeq:NP_000242.1 UniGene:Hs.597656
PDB:2O8B PDB:2O8C PDB:2O8D PDB:2O8E PDB:2O8F PDB:3THW PDB:3THX
PDB:3THY PDB:3THZ PDBsum:2O8B PDBsum:2O8C PDBsum:2O8D PDBsum:2O8E
PDBsum:2O8F PDBsum:3THW PDBsum:3THX PDBsum:3THY PDBsum:3THZ
ProteinModelPortal:P43246 SMR:P43246 DIP:DIP-35054N IntAct:P43246
MINT:MINT-84789 STRING:P43246 PhosphoSite:P43246 DMDM:1171032
PaxDb:P43246 PeptideAtlas:P43246 PRIDE:P43246 DNASU:4436
Ensembl:ENST00000233146 Ensembl:ENST00000543555 GeneID:4436
KEGG:hsa:4436 UCSC:uc002rvy.1 GeneCards:GC02P047630 HGNC:HGNC:7325
HPA:CAB009572 MIM:120435 MIM:609309 neXtProt:NX_P43246
PharmGKB:PA31133 InParanoid:P43246 PhylomeDB:P43246 ChiTaRS:MSH2
EvolutionaryTrace:P43246 GenomeRNAi:4436 NextBio:17289
ArrayExpress:P43246 Bgee:P43246 CleanEx:HS_MSH2
Genevestigator:P43246 GermOnline:ENSG00000095002 Uniprot:P43246
Length = 934
Score = 249 (92.7 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 65/224 (29%), Positives = 119/224 (53%)
Query: 341 VPIDIKVECETRVV-VITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
+P D+ E + ++ +ITGPN GGK+ ++ G+ LM++ G ++P ++ + D IL
Sbjct: 651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES-AEVSIVDCIL 709
Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
A +G S + +STF + IL +++SL++IDE+G GT +G LA +I +Y
Sbjct: 710 ARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEY 769
Query: 460 LRDRVG-LAVVTTHYADLSCLKDKDTRFENA-ATEFSLE-TLRPTYRILWGSTGDSNALN 516
+ ++G + TH+ +L+ L ++ N T + E TL Y++ G S ++
Sbjct: 770 IATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIH 829
Query: 517 IAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRK 560
+A+ F + +I+ A++ L E Q +S+ Y +ME K
Sbjct: 830 VAELANFPKHVIECAKQKALELE-EFQYIGESQGYD-IMEPAAK 871
Score = 37 (18.1 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 40 DLSTIEDIAGILNSAVSGQ 58
D+S + G+ SAV GQ
Sbjct: 140 DMSASIGVVGVKMSAVDGQ 158
>UNIPROTKB|Q759V4 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein MSH3"
species:284811 "Ashbya gossypii ATCC 10895" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0005737 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0008094 EMBL:AE016817 GenomeReviews:AE016817_GR
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710 HSSP:Q56215
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GO:GO:0000735 KO:K08736 OMA:KRTKSIY
RefSeq:NP_984265.1 ProteinModelPortal:Q759V4 STRING:Q759V4
EnsemblFungi:AAS52089 GeneID:4620427 KEGG:ago:AGOS_ADR168C
HOGENOM:HOG000057130 OrthoDB:EOG42NN7M PhylomeDB:Q759V4
Uniprot:Q759V4
Length = 1032
Score = 250 (93.1 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 66/218 (30%), Positives = 115/218 (52%)
Query: 341 VPIDIKVECE-TRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
+P D+ + E ++++ITGPN GGK++ ++ + L +M++ G Y+PA+ FD I
Sbjct: 778 MPNDVNLNREGKKIMIITGPNMGGKSSYIRQVALLVIMAQIGCYVPAQE-AEFSIFDQIF 836
Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
IG + +L +N STF ++ +V IL + SL+L+DE+G GT +G++++ ++L+Y
Sbjct: 837 TRIGAYDNLLRNDSTFKIEMTEMVQILRSSTENSLLLLDEVGRGTGTHDGISISYALLRY 896
Query: 460 ---LRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRP---------TYRILWG 507
L + L + THYA L ++ N + +E RP Y++ G
Sbjct: 897 FIELHNACPLILFITHYASLGSIRSPI--LGNYHMSY-IEEKRPGENWPSVVFLYKLKEG 953
Query: 508 STGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQH 545
+S LN+AK II RA K+ L+ E + +
Sbjct: 954 RAHNSYGLNVAKLADIQTGIINRAYKISTMLKQEMESN 991
Score = 37 (18.1 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 133 EDLELIRAERKRNMENLDSLLKK 155
+D+E + E + ++N+ +LK+
Sbjct: 621 QDIEAVIGELRDELKNIRVILKR 643
>UNIPROTKB|Q7R8N0 [details] [associations]
symbol:PY07191 "DNA mismatch repair protein msh2"
species:73239 "Plasmodium yoelii yoelii" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 EMBL:AABL01002579 RefSeq:XP_727998.1
ProteinModelPortal:Q7R8N0 STRING:Q7R8N0 GeneID:3800207
KEGG:pyo:PY07191 EuPathDB:PlasmoDB:PY07191 Uniprot:Q7R8N0
Length = 593
Score = 231 (86.4 bits), Expect = 3.1e-16, Sum P(2) = 3.1e-16
Identities = 58/226 (25%), Positives = 119/226 (52%)
Query: 332 LSKGISDFPVPIDIKV-ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP 390
L IS+F +P DI + + ++R++++TGPN GGK+ ++ + + ++++ G+++P +
Sbjct: 316 LQHNISNF-IPNDIHMNKNKSRLIIVTGPNMGGKSTYIRQIAIICILAQIGMFVPC-DFC 373
Query: 391 RLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGV 450
+P F I+ +G + +STF + I++ SL+++DE+G GT EG+
Sbjct: 374 EIPIFTQIMCRVGASDFQLKGISTFLSEMIEASAIIKNADNNSLIIVDELGRGTSTYEGL 433
Query: 451 ALATSILQYLRDRVG-LAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPT----YRIL 505
++ SI +Y+ D + + TH+ ++S + + N E ++ Y I
Sbjct: 434 GISWSIGKYILDNIKCFCLFATHFHEMSNIAYQCEGVINRHIETIIDQKNKKICFLYEIK 493
Query: 506 WGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRP-ERQQHRKSEL 550
G++ S +N+A+ + +IQ+A + VE L E + + K +L
Sbjct: 494 DGASNKSYGVNVAEIAKLPKDVIQKAYEKVEELESAENKYYLKEKL 539
Score = 48 (22.0 bits), Expect = 3.1e-16, Sum P(2) = 3.1e-16
Identities = 17/71 (23%), Positives = 33/71 (46%)
Query: 91 DSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLD 150
D L ++S L++++ L E+EE K+ +I +LE I E+ M+ +
Sbjct: 104 DILNKFSKFLDMIEMTIDLKEIEEN-------KVYLISKHFDSELEQIYNEKSALMKKIK 156
Query: 151 SLLKKVAAQIF 161
+ + V +F
Sbjct: 157 NHKEDVEKDLF 167
>TIGR_CMR|DET_1219 [details] [associations]
symbol:DET_1219 "DNA mismatch repair protein MutS"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_181932.1 ProteinModelPortal:Q3Z767
STRING:Q3Z767 GeneID:3229472 KEGG:det:DET1219 PATRIC:21609473
OMA:HIHAKTL BioCyc:DETH243164:GJNF-1220-MONOMER Uniprot:Q3Z767
Length = 858
Score = 236 (88.1 bits), Expect = 3.3e-16, P = 3.3e-16
Identities = 64/209 (30%), Positives = 110/209 (52%)
Query: 344 DIKVECET-RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADI 402
DI + E +++++TGPN GK+ +K L LM++ G Y+PA+ L D I + I
Sbjct: 598 DISLSAEDCQIIILTGPNMAGKSTYLKQTALIVLMAQIGSYVPAET-AELCLTDRIFSRI 656
Query: 403 GDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD 462
G + L STF + IL + SL+++DEIG GT +G+A+A ++++Y+
Sbjct: 657 GAREDLSAGQSTFMVEMVETASILNTATSRSLLILDEIGRGTSTYDGLAIAQAVVEYIHS 716
Query: 463 RVGLAVVT---THYADLSCLKDKDTRFEN---AATEFSLETLRPTYRILWGSTGDSNALN 516
+ L T THY +L L + R +N A +E E + +RI+ G S ++
Sbjct: 717 QPSLHAKTLFATHYHELVELANYLPRVKNYNIAVSEDRGEVVF-LHRIVPGGVDKSYGIH 775
Query: 517 IAKSIGFDRKIIQRAQKLVERLR-PERQQ 544
+AK G +I+RA +++ L P +++
Sbjct: 776 VAKLAGLPGWVIKRAYEVLTELENPAKKE 804
>UNIPROTKB|F5H2F9 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0008340
GO:GO:0009411 GO:GO:0008630 GO:GO:0003684 GO:GO:0003682
GO:GO:0006298 GO:GO:0000790 GO:GO:0045190 GO:GO:0045910
GO:GO:0016446 EMBL:AC006509 SUPFAM:SSF48334 GO:GO:0032137
GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 HGNC:HGNC:7329 IPI:IPI01013073
ProteinModelPortal:F5H2F9 SMR:F5H2F9 Ensembl:ENST00000538136
ArrayExpress:F5H2F9 Bgee:F5H2F9 Uniprot:F5H2F9
Length = 1058
Score = 225 (84.3 bits), Expect = 3.4e-16, Sum P(2) = 3.4e-16
Identities = 69/248 (27%), Positives = 120/248 (48%)
Query: 338 DFPVPIDIKVECETR--------VVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389
DF +P DI + CE V++TGPN GGK+ M+ GL ++M++ G Y+PA+
Sbjct: 805 DF-IPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVC 863
Query: 390 PRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEG 449
RL D + +G + STF +S IL + SLVL+DE+G GT +G
Sbjct: 864 -RLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDG 922
Query: 450 VALATSILQYLRDRVGLAVV-TTHYADL--SCLKDKDTRF-------ENAATEFSLETLR 499
A+A ++++ L + + + +THY L ++ R EN + S ET+
Sbjct: 923 TAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPSQETIT 982
Query: 500 PTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQS--LMEE 557
Y+ + G+ S N A+ ++IQ+ + + R + ++ L++ L E
Sbjct: 983 FLYKFIKGACPKSYGFNAARLANLPEEVIQKGHR---KAREFEKMNQSLRLFREVCLASE 1039
Query: 558 RRKLESQA 565
R ++++A
Sbjct: 1040 RSTVDAEA 1047
Score = 62 (26.9 bits), Expect = 3.4e-16, Sum P(2) = 3.4e-16
Identities = 31/129 (24%), Positives = 53/129 (41%)
Query: 6 VQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLD-LSTIEDIAGILNSAVSGQLLSPSE 64
V PFGK +LL Q A D L IED+ ++ +S + +
Sbjct: 460 VDTCHTPFGK------RLLKQWLCAPLCNHYAINDRLDAIEDLM-VVPDKISEVVELLKK 512
Query: 65 ICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKL 124
+ + R L ++NV L D ++ K +FL+ LE GF + CK+
Sbjct: 513 LPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALE---GFKVMCKI 569
Query: 125 LIILDRASE 133
+ I++ ++
Sbjct: 570 IGIMEEVAD 578
Score = 42 (19.8 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 124 LLIILDRASEDLELIRAERKRNMENLDSLLKKV 156
L+++ D+ SE +EL++ + +L+ LL K+
Sbjct: 496 LMVVPDKISEVVELLK-----KLPDLERLLSKI 523
Score = 41 (19.5 bits), Expect = 5.1e-14, Sum P(2) = 5.1e-14
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 187 KYLLPDGIALNVSSSGA----TYFMEPKGAVEFNNMEVRLSNSEIAEETAIL 234
+Y+ D ++ + SGA Y AV NN+E+ L+ + + E +L
Sbjct: 406 EYIPLDSDTVSTTRSGAIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLL 457
>SGD|S000005450 [details] [associations]
symbol:MSH2 "Protein that forms heterodimers with Msh3p and
Msh6p that bind to DNA" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA;IDA] [GO:0006298 "mismatch
repair" evidence=IEA;IMP] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA;IPI]
[GO:0032302 "MutSbeta complex" evidence=IEA;IPI] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0036297 "interstrand cross-link
repair" evidence=IGI] [GO:0000735 "removal of nonhomologous ends"
evidence=IGI;IMP] [GO:0000710 "meiotic mismatch repair"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0006301 "postreplication repair" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0045128 "negative
regulation of reciprocal meiotic recombination" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0000228 "nuclear
chromosome" evidence=IDA] [GO:0006312 "mitotic recombination"
evidence=IMP] [GO:0000403 "Y-form DNA binding" evidence=IDA]
[GO:0000404 "loop DNA binding" evidence=IDA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IDA]
[GO:0030466 "chromatin silencing at silent mating-type cassette"
evidence=IGI] [GO:0006311 "meiotic gene conversion" evidence=IMP]
[GO:0032135 "DNA insertion or deletion binding" evidence=IDA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IDA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IMP;IDA] [GO:0006310 "DNA recombination" evidence=IMP]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
SGD:S000005450 GO:GO:0005524 EMBL:BK006948 GO:GO:0003684
GO:GO:0030466 EMBL:X83121 GO:GO:0030983 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0006301 GO:GO:0008094 GO:GO:0036297
GO:GO:0006311 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0000710 GO:GO:0032301 HOGENOM:HOG000196498
KO:K08735 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406
GeneTree:ENSGT00550000074867 OrthoDB:EOG4S7NZ5 GO:GO:0000735
EMBL:M84170 EMBL:Z74832 PIR:S57379 RefSeq:NP_014551.1
ProteinModelPortal:P25847 SMR:P25847 DIP:DIP-2415N IntAct:P25847
MINT:MINT-631153 STRING:P25847 PaxDb:P25847 PeptideAtlas:P25847
EnsemblFungi:YOL090W GeneID:854063 KEGG:sce:YOL090W CYGD:YOL090w
NextBio:975668 Genevestigator:P25847 GermOnline:YOL090W
Uniprot:P25847
Length = 964
Score = 236 (88.1 bits), Expect = 3.9e-16, P = 3.9e-16
Identities = 63/218 (28%), Positives = 119/218 (54%)
Query: 354 VVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLS 413
++ITGPN GGK+ ++ +G+ SLM++ G ++P + + D IL +G S + +S
Sbjct: 684 LIITGPNMGGKSTYIRQVGVISLMAQIGCFVPCEE-AEIAIVDAILCRVGAGDSQLKGVS 742
Query: 414 TFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG-LAVVTTH 472
TF I IL+ S+ SL+++DE+G GT +G LA +I +++ ++G A+ TH
Sbjct: 743 TFMVEILETASILKNASKNSLIIVDELGRGTSTYDGFGLAWAIAEHIASKIGCFALFATH 802
Query: 473 YADLSCLKDKDTRFEN----AATEFSL-------ETLRPTYRILWGSTGDSNALNIAKSI 521
+ +L+ L +K +N A E +L E + Y++ G + S +++A+ +
Sbjct: 803 FHELTELSEKLPNVKNMHVVAHIEKNLKEQKHDDEDITLLYKVEPGISDQSFGIHVAEVV 862
Query: 522 GFDRKIIQRAQKL---VERLRPERQQHRKSELYQSLME 556
F KI++ A++ ++ L+ + +K++L SL E
Sbjct: 863 QFPEKIVKMAKRKANELDDLKTNNEDLKKAKL--SLQE 898
>UNIPROTKB|E1B9Q4 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0045190 "isotype switching"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0032405
"MutLalpha complex binding" evidence=IEA] [GO:0032357 "oxidized
purine DNA binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032143 "single thymine insertion binding"
evidence=IEA] [GO:0032142 "single guanine insertion binding"
evidence=IEA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0000400 "four-way junction DNA
binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0000287 GO:GO:0043531 GO:GO:0003682 GO:GO:0016887
GO:GO:0006298 GO:GO:0000790 GO:GO:0045190 InterPro:IPR000313
PROSITE:PS50812 GO:GO:0045910 SMART:SM00293 GO:GO:0016446
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0032301
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032357 GO:GO:0032142
GO:GO:0032143 GO:GO:0051096 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 CTD:2956 GeneTree:ENSGT00550000075024
EMBL:DAAA02030744 IPI:IPI00714742 RefSeq:NP_001179666.1
UniGene:Bt.98842 Ensembl:ENSBTAT00000001867 GeneID:540526
KEGG:bta:540526 NextBio:20878683 Uniprot:E1B9Q4
Length = 1360
Score = 224 (83.9 bits), Expect = 4.1e-16, Sum P(2) = 4.1e-16
Identities = 70/248 (28%), Positives = 116/248 (46%)
Query: 338 DFPVPIDIKVECETR--------VVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389
DF +P DI + CE V++TGPN GGK+ M+ GL ++M++ G Y+PA+
Sbjct: 1107 DF-IPNDILIGCEEEEEENGKAYCVLVTGPNMGGKSTLMRQAGLLAIMAQMGCYVPAEVC 1165
Query: 390 PRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEG 449
RL D + +G + STF +S IL + SLVL+DE+G GT +G
Sbjct: 1166 -RLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLVLVDELGRGTATFDG 1224
Query: 450 VALATSILQYLRDRVGLAVV-TTHYADL--SCLKDKDTRF-------ENAATEFSLETLR 499
A+A ++++ L + + + +THY L ++ R EN + S ET+
Sbjct: 1225 TAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPSQETIT 1284
Query: 500 PTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQS--LMEE 557
Y+ + G+ S N A+ ++IQ+ + Q R L++ L E
Sbjct: 1285 FLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMTQSLR---LFREVCLASE 1341
Query: 558 RRKLESQA 565
R +++ A
Sbjct: 1342 RSTVDADA 1349
Score = 65 (27.9 bits), Expect = 4.1e-16, Sum P(2) = 4.1e-16
Identities = 31/132 (23%), Positives = 55/132 (41%)
Query: 6 VQKAQIPFGKSLEESQKLLNQ-TSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSE 64
+ PFGK +LL Q A L + L IED+ ++ +S + +
Sbjct: 761 IDTCHTPFGK------RLLKQWLCAPLCNPHAINDRLDAIEDLM-VVPDKISEVVDLLKK 813
Query: 65 ICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKL 124
+ + R L ++NV L D ++ K +FL+ LE GF + CK+
Sbjct: 814 LPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALE---GFKVICKI 870
Query: 125 LIILDRASEDLE 136
+ I++ +D +
Sbjct: 871 IGIMEEVIDDFK 882
Score = 38 (18.4 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 212 AVEFNNMEVRLSNSEIAEETAILSLL-TAEIAKSEREIK 249
AV NN+E+ L+ + + E +L + T +R +K
Sbjct: 736 AVTLNNLEIFLNGTNGSTEGTLLEKIDTCHTPFGKRLLK 774
>POMBASE|SPAC13F5.01c [details] [associations]
symbol:msh1 "mitochondrial MutS protein Msh1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005524
"ATP binding" evidence=ISS] [GO:0005739 "mitochondrion"
evidence=ISS;IDA] [GO:0006298 "mismatch repair" evidence=ISM]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0030983 "mismatched DNA binding" evidence=ISM] [GO:0043504
"mitochondrial DNA repair" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 PomBase:SPAC13F5.01c GO:GO:0005739
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 GO:GO:0043504 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 EMBL:AB027833 PIR:T38256 RefSeq:NP_593649.2
ProteinModelPortal:O13921 STRING:O13921 PRIDE:O13921
EnsemblFungi:SPAC13F5.01c.1 GeneID:2542833 KEGG:spo:SPAC13F5.01c
HOGENOM:HOG000157750 OMA:LAMQCGD OrthoDB:EOG42591V NextBio:20803875
SUPFAM:SSF53150 Uniprot:O13921
Length = 941
Score = 212 (79.7 bits), Expect = 4.6e-16, Sum P(2) = 4.6e-16
Identities = 61/217 (28%), Positives = 105/217 (48%)
Query: 332 LSKGISDFPVPIDIKVEC-----ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPA 386
+ KG+S +P +C + +ITGPN GK+ ++ + S++++ G ++PA
Sbjct: 717 VEKGLSHKLIPFTPN-DCFVGNGNVNIWLITGPNMAGKSTFLRQNAIISILAQIGSFVPA 775
Query: 387 KNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDP 446
N R+ D I + IG +L Q STF + IL+ +R S V++DEIG GT
Sbjct: 776 SN-ARIGIVDQIFSRIGSADNLYQQKSTFMVEMMETSFILKNATRRSFVIMDEIGRGTTA 834
Query: 447 SEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFSLE----TLRPT 501
S+G+A+A L+YL + TH L+ L E T S++ T
Sbjct: 835 SDGIAIAYGCLKYLSTINHSRTLFATHAHQLTNLTKSFKNVECYCTNLSIDRDDHTFSFD 894
Query: 502 YRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERL 538
Y++ G S+ L +A+ G + ++ A++++ L
Sbjct: 895 YKLKKGVNYQSHGLKVAEMAGIPKNVLLAAEEVLTLL 931
Score = 73 (30.8 bits), Expect = 4.6e-16, Sum P(2) = 4.6e-16
Identities = 26/106 (24%), Positives = 48/106 (45%)
Query: 203 ATYFMEPKGAVEFN-----NMEVRLSNSEI---AEETAILSLLTAEIAKSEREIKYLMDR 254
A F K F ++ + L N+++ EE +L +T EI + ++ L +
Sbjct: 618 AVLFQSTKSTASFQLPGWTSLGMDLENTKLHIHQEEQRVLKSITDEIVSHHKTLRSLANA 677
Query: 255 VLEIDLAFARAGFAQWMDGVCPILS-SQSHVSFDSSINI--EGIKH 297
+ E+D++ + A AQ D V P++ S +H I +G+ H
Sbjct: 678 LDELDISTSLATLAQEQDFVRPVVDDSHAHTVIQGRHPIVEKGLSH 723
Score = 37 (18.1 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 221 RLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRV 255
R+S EI + ++ S T I +E KY + V
Sbjct: 245 RISPREIVLDESLKSFTTHPIYSFIQERKYFLSYV 279
>UNIPROTKB|B4DF41 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
EMBL:AC006509 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 UniGene:Hs.445052 HGNC:HGNC:7329
HOVERGEN:HBG000101 EMBL:AK293921 IPI:IPI01014931 SMR:B4DF41
STRING:B4DF41 Ensembl:ENST00000540021 Uniprot:B4DF41
Length = 1230
Score = 225 (84.3 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
Identities = 69/248 (27%), Positives = 120/248 (48%)
Query: 338 DFPVPIDIKVECETR--------VVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389
DF +P DI + CE V++TGPN GGK+ M+ GL ++M++ G Y+PA+
Sbjct: 977 DF-IPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVC 1035
Query: 390 PRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEG 449
RL D + +G + STF +S IL + SLVL+DE+G GT +G
Sbjct: 1036 -RLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDG 1094
Query: 450 VALATSILQYLRDRVGLAVV-TTHYADL--SCLKDKDTRF-------ENAATEFSLETLR 499
A+A ++++ L + + + +THY L ++ R EN + S ET+
Sbjct: 1095 TAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPSQETIT 1154
Query: 500 PTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQS--LMEE 557
Y+ + G+ S N A+ ++IQ+ + + R + ++ L++ L E
Sbjct: 1155 FLYKFIKGACPKSYGFNAARLANLPEEVIQKGHR---KAREFEKMNQSLRLFREVCLASE 1211
Query: 558 RRKLESQA 565
R ++++A
Sbjct: 1212 RSTVDAEA 1219
Score = 62 (26.9 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
Identities = 31/129 (24%), Positives = 53/129 (41%)
Query: 6 VQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLD-LSTIEDIAGILNSAVSGQLLSPSE 64
V PFGK +LL Q A D L IED+ ++ +S + +
Sbjct: 632 VDTCHTPFGK------RLLKQWLCAPLCNHYAINDRLDAIEDLM-VVPDKISEVVELLKK 684
Query: 65 ICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKL 124
+ + R L ++NV L D ++ K +FL+ LE GF + CK+
Sbjct: 685 LPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALE---GFKVMCKI 741
Query: 125 LIILDRASE 133
+ I++ ++
Sbjct: 742 IGIMEEVAD 750
Score = 42 (19.8 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 124 LLIILDRASEDLELIRAERKRNMENLDSLLKKV 156
L+++ D+ SE +EL++ + +L+ LL K+
Sbjct: 668 LMVVPDKISEVVELLK-----KLPDLERLLSKI 695
Score = 41 (19.5 bits), Expect = 7.6e-14, Sum P(2) = 7.6e-14
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 187 KYLLPDGIALNVSSSGA----TYFMEPKGAVEFNNMEVRLSNSEIAEETAIL 234
+Y+ D ++ + SGA Y AV NN+E+ L+ + + E +L
Sbjct: 578 EYIPLDSDTVSTTRSGAIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLL 629
>UNIPROTKB|P23909 [details] [associations]
symbol:mutS species:83333 "Escherichia coli K-12"
[GO:0006298 "mismatch repair" evidence=IEA;IDA;IMP] [GO:0030983
"mismatched DNA binding" evidence=IDA] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0032300 "mismatch repair complex"
evidence=IGI] [GO:0032136 "adenine/cytosine mispair binding"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEP] [GO:0043531 "ADP binding" evidence=IDA] [GO:0008301
"DNA binding, bending" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0000018 "regulation of DNA recombination"
evidence=IMP] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000166
"nucleotide binding" evidence=IEA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003684
GO:GO:0043531 GO:GO:0008301 GO:GO:0006298 EMBL:U29579 GO:GO:0000018
GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
PDB:2OK2 PDBsum:2OK2 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032300 HOGENOM:HOG000221407 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
OMA:ITQTVRD EMBL:M64730 EMBL:AF004287 EMBL:AF001987 EMBL:AF001988
EMBL:AF001989 EMBL:AF001990 EMBL:AF001991 EMBL:AF001992
EMBL:AF001993 EMBL:AF001994 EMBL:AF001995 EMBL:AF001996
EMBL:AF001997 EMBL:AF001998 EMBL:AF001999 EMBL:AF002000
EMBL:AF002001 EMBL:AF002002 EMBL:AF002003 EMBL:AF002004
EMBL:AF002005 EMBL:AF002006 EMBL:AF002007 EMBL:AF002008
EMBL:AF002009 EMBL:AF002010 PIR:I54964 RefSeq:NP_417213.1
RefSeq:YP_490942.1 PDB:1E3M PDB:1NG9 PDB:1OH5 PDB:1OH6 PDB:1OH7
PDB:1OH8 PDB:1W7A PDB:1WB9 PDB:1WBB PDB:1WBD PDB:2WTU PDB:3K0S
PDBsum:1E3M PDBsum:1NG9 PDBsum:1OH5 PDBsum:1OH6 PDBsum:1OH7
PDBsum:1OH8 PDBsum:1W7A PDBsum:1WB9 PDBsum:1WBB PDBsum:1WBD
PDBsum:2WTU PDBsum:3K0S ProteinModelPortal:P23909 SMR:P23909
DIP:DIP-10287N IntAct:P23909 MINT:MINT-1264156 SWISS-2DPAGE:P23909
PRIDE:P23909 EnsemblBacteria:EBESCT00000004425
EnsemblBacteria:EBESCT00000016508 GeneID:12932427 GeneID:947206
KEGG:ecj:Y75_p2671 KEGG:eco:b2733 PATRIC:32120868 EchoBASE:EB0620
EcoGene:EG10625 BioCyc:EcoCyc:EG10625-MONOMER
BioCyc:ECOL316407:JW2703-MONOMER BioCyc:MetaCyc:EG10625-MONOMER
EvolutionaryTrace:P23909 Genevestigator:P23909 GO:GO:0032136
Uniprot:P23909
Length = 853
Score = 234 (87.4 bits), Expect = 5.3e-16, P = 5.3e-16
Identities = 64/192 (33%), Positives = 103/192 (53%)
Query: 350 ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLE 409
+ R+++ITGPN GGK+ M+ L +LM+ G Y+PA+ P D I +G L
Sbjct: 606 QRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGP-IDRIFTRVGAADDLA 664
Query: 410 QNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRV-GLAV 468
STF ++ +IL + SLVL+DEIG GT +G++LA + + L +++ L +
Sbjct: 665 SGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTL 724
Query: 469 VTTHYADLSCLKDKDTRFENAATEFSLE---TLRPTYRILWGSTGDSNALNIAKSIGFDR 525
THY +L+ L +K N + +LE T+ + + G+ S L +A G +
Sbjct: 725 FATHYFELTQLPEKMEGVANVHLD-ALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPK 783
Query: 526 KIIQRA-QKLVE 536
++I+RA QKL E
Sbjct: 784 EVIKRARQKLRE 795
>UNIPROTKB|Q0JBW2 [details] [associations]
symbol:Os04g0507000 "Os04g0507000 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 PROSITE:PS00486
SMART:SM00534 InterPro:IPR000305 Pfam:PF01541 GO:GO:0005739
GO:GO:0005524 GO:GO:0009507 GO:GO:0009411 GO:GO:0003684
EMBL:AP008210 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 SUPFAM:SSF82771 GO:GO:0000400
GO:GO:0032042 GO:GO:0032137 GO:GO:0000710 OMA:RGTETAK GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
RefSeq:NP_001053261.1 UniGene:Os.74427 STRING:Q0JBW2 PRIDE:Q0JBW2
EnsemblPlants:LOC_Os04g42784.1 GeneID:4336345 KEGG:osa:4336345
Gramene:Q0JBW2 ProtClustDB:CLSN2694915 Uniprot:Q0JBW2
Length = 1132
Score = 232 (86.7 bits), Expect = 6.0e-16, Sum P(2) = 6.0e-16
Identities = 69/245 (28%), Positives = 125/245 (51%)
Query: 355 VITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLST 414
++TGPN GGK++ ++++ A+L+ GL +PA + +P FD I+ + + S S+
Sbjct: 762 ILTGPNGGGKSSMLRSVCAAALLGICGLMVPAASAV-IPHFDSIMLHMKAYDSPADGKSS 820
Query: 415 FSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG-LAVVTTHY 473
F +S I ++ + SLVLIDEI GT+ ++G +A SI++ L D VG + +++TH
Sbjct: 821 FQIEMSEIRSLVCRATARSLVLIDEICRGTETAKGTCIAGSIIERL-DNVGCIGIISTHL 879
Query: 474 A---DLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQR 530
DL L +T F+ TE ++PT++++ G +S A A+ G II+R
Sbjct: 880 HGIFDLP-LSLHNTDFKAMGTEIIDRCIQPTWKLMDGICRESLAFQTARKEGMPDLIIRR 938
Query: 531 AQKLVERLRPERQQ-----HRKSELYQSLMEERRKLESQARTAASLHAEIMDLYREDSTS 585
A++L + +Q H + + S + + + R L + L R++ S
Sbjct: 939 AEELYLAMSTNSKQTSSAVHHEISIANSTVNSLVEKPNYLRNGLELQSGSFGLLRKEIES 998
Query: 586 ASISV 590
++
Sbjct: 999 VVTTI 1003
Score = 53 (23.7 bits), Expect = 6.0e-16, Sum P(2) = 6.0e-16
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 99 LLELLKNCNFLTELEEKIGFCIDCKLLIILDRA 131
+LELL+ + +EL++KI + C ++I+ +A
Sbjct: 669 VLELLRGLS--SELQDKINVLVFCSTMLIITKA 699
>UNIPROTKB|I3LHZ9 [details] [associations]
symbol:LOC100739477 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 EMBL:FP476043
Ensembl:ENSSSCT00000028757 Uniprot:I3LHZ9
Length = 1334
Score = 225 (84.3 bits), Expect = 6.2e-16, Sum P(2) = 6.2e-16
Identities = 70/248 (28%), Positives = 117/248 (47%)
Query: 338 DFPVPIDIKVECETR--------VVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389
DF +P DI + CE V++TGPN GGK+ M+ GL ++M++ G Y+PA+
Sbjct: 1083 DF-IPNDILIGCEEEEEENDKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVC 1141
Query: 390 PRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEG 449
RL D + +G + STF +S IL + SLVL+DE+G GT +G
Sbjct: 1142 -RLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLVLVDELGRGTATFDG 1200
Query: 450 VALATSILQYLRDRVGLAVV-TTHYADL--SCLKDKDTRF-------ENAATEFSLETLR 499
A+A ++++ L + + + +THY L ++ R EN + S ET+
Sbjct: 1201 TAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPSQETIT 1260
Query: 500 PTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQS--LMEE 557
Y+ + G+ S N A+ ++IQ+ + Q R L++ L E
Sbjct: 1261 FLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMTQSLR---LFREVCLASE 1317
Query: 558 RRKLESQA 565
R ++++A
Sbjct: 1318 RSTVDAEA 1325
Score = 62 (26.9 bits), Expect = 6.2e-16, Sum P(2) = 6.2e-16
Identities = 32/131 (24%), Positives = 55/131 (41%)
Query: 6 VQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEI 65
+ PFGK L + Q L A+ S LD IED+ ++ +S + ++
Sbjct: 737 IDTCHTPFGKRLLK-QWLCAPLCNPYAI--SDRLD--AIEDLM-VVPDKISEVVDLLKKL 790
Query: 66 CAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLL 125
+ R L ++NV L D ++ K +FL+ LE GF + CK+
Sbjct: 791 PDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALE---GFKVICKIR 847
Query: 126 IILDRASEDLE 136
I++ +D +
Sbjct: 848 GIMEEVIDDFK 858
Score = 40 (19.1 bits), Expect = 4.5e-13, Sum P(3) = 4.5e-13
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 125 LIILDRASEDLELIRAERKRNMENLDSLLKKV 156
L + D SE E ++E + ME+ + + KV
Sbjct: 179 LAVCDEPSEPEEEEKSEEENEMESEEEVQPKV 210
Score = 39 (18.8 bits), Expect = 4.5e-13, Sum P(3) = 4.5e-13
Identities = 16/68 (23%), Positives = 31/68 (45%)
Query: 187 KYLLPDGIALNVSSSGATYFMEPK----GAVEFNNMEVRLSNSEIAEETAILSLL-TAEI 241
+Y+ D ++ S GA + + AV NN+E+ L+ + + E +L + T
Sbjct: 683 EYIPLDSDVVSASRPGAVFAKANQRMVLDAVTLNNLEIFLNATNGSPEGTLLEKIDTCHT 742
Query: 242 AKSEREIK 249
+R +K
Sbjct: 743 PFGKRLLK 750
>UNIPROTKB|P52701 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=ISS;IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=ISS;IBA] [GO:0009411 "response to
UV" evidence=ISS;IBA] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=ISS;IBA] [GO:0045190 "isotype
switching" evidence=ISS;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0032405 "MutLalpha complex binding" evidence=IDA]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IDA;IMP] [GO:0032301
"MutSalpha complex" evidence=IDA] [GO:0030983 "mismatched DNA
binding" evidence=IDA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IDA] [GO:0032142 "single guanine insertion
binding" evidence=IDA] [GO:0032143 "single thymine insertion
binding" evidence=IDA] [GO:0032357 "oxidized purine DNA binding"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0000287 "magnesium ion binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IDA] [GO:0043531 "ADP binding" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=ISS] [GO:0008340
"determination of adult lifespan" evidence=ISS] [GO:0016447
"somatic recombination of immunoglobulin gene segments"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IDA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0045910
"negative regulation of DNA recombination" evidence=IDA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0003684 GO:GO:0003682 GO:GO:0000790 GO:GO:0045190 MIM:276300
GO:GO:0007131 GO:GO:0000228 InterPro:IPR000313 PROSITE:PS50812
GO:GO:0045910 Orphanet:144 SMART:SM00293 MIM:608089 GO:GO:0008094
GO:GO:0016446 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0051096 PDB:2O8B PDB:2O8C PDB:2O8D PDB:2O8E PDB:2O8F
PDBsum:2O8B PDBsum:2O8C PDBsum:2O8D PDBsum:2O8E PDBsum:2O8F
HOGENOM:HOG000243127 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
CTD:2956 EMBL:U73737 EMBL:U73732 EMBL:U73733 EMBL:U73734
EMBL:U73736 EMBL:D89645 EMBL:D89646 EMBL:AY082894 EMBL:BC004246
EMBL:U54777 EMBL:U28946 IPI:IPI00106847 IPI:IPI00384456 PIR:JC5839
RefSeq:NP_000170.1 UniGene:Hs.445052 PDB:2GFU PDBsum:2GFU
ProteinModelPortal:P52701 SMR:P52701 DIP:DIP-32972N IntAct:P52701
MINT:MINT-131993 STRING:P52701 PhosphoSite:P52701 DMDM:68067672
PaxDb:P52701 PeptideAtlas:P52701 PRIDE:P52701 DNASU:2956
Ensembl:ENST00000234420 GeneID:2956 KEGG:hsa:2956 UCSC:uc002rwc.2
UCSC:uc002rwd.4 GeneCards:GC02P048010 HGNC:HGNC:7329 HPA:CAB009091
HPA:HPA028376 HPA:HPA028446 MIM:600678 MIM:614350
neXtProt:NX_P52701 PharmGKB:PA184 HOVERGEN:HBG000101
InParanoid:P52701 OrthoDB:EOG4CG07F PhylomeDB:P52701
EvolutionaryTrace:P52701 GenomeRNAi:2956 NextBio:11716
PMAP-CutDB:P52701 ArrayExpress:P52701 Bgee:P52701 CleanEx:HS_MSH6
Genevestigator:P52701 GermOnline:ENSG00000116062 Uniprot:P52701
Length = 1360
Score = 225 (84.3 bits), Expect = 6.5e-16, Sum P(2) = 6.5e-16
Identities = 69/248 (27%), Positives = 120/248 (48%)
Query: 338 DFPVPIDIKVECETR--------VVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389
DF +P DI + CE V++TGPN GGK+ M+ GL ++M++ G Y+PA+
Sbjct: 1107 DF-IPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVC 1165
Query: 390 PRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEG 449
RL D + +G + STF +S IL + SLVL+DE+G GT +G
Sbjct: 1166 -RLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDG 1224
Query: 450 VALATSILQYLRDRVGLAVV-TTHYADL--SCLKDKDTRF-------ENAATEFSLETLR 499
A+A ++++ L + + + +THY L ++ R EN + S ET+
Sbjct: 1225 TAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPSQETIT 1284
Query: 500 PTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQS--LMEE 557
Y+ + G+ S N A+ ++IQ+ + + R + ++ L++ L E
Sbjct: 1285 FLYKFIKGACPKSYGFNAARLANLPEEVIQKGHR---KAREFEKMNQSLRLFREVCLASE 1341
Query: 558 RRKLESQA 565
R ++++A
Sbjct: 1342 RSTVDAEA 1349
Score = 62 (26.9 bits), Expect = 6.5e-16, Sum P(2) = 6.5e-16
Identities = 31/129 (24%), Positives = 53/129 (41%)
Query: 6 VQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLD-LSTIEDIAGILNSAVSGQLLSPSE 64
V PFGK +LL Q A D L IED+ ++ +S + +
Sbjct: 762 VDTCHTPFGK------RLLKQWLCAPLCNHYAINDRLDAIEDLM-VVPDKISEVVELLKK 814
Query: 65 ICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKL 124
+ + R L ++NV L D ++ K +FL+ LE GF + CK+
Sbjct: 815 LPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALE---GFKVMCKI 871
Query: 125 LIILDRASE 133
+ I++ ++
Sbjct: 872 IGIMEEVAD 880
Score = 42 (19.8 bits), Expect = 7.8e-14, Sum P(2) = 7.8e-14
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 124 LLIILDRASEDLELIRAERKRNMENLDSLLKKV 156
L+++ D+ SE +EL++ + +L+ LL K+
Sbjct: 798 LMVVPDKISEVVELLK-----KLPDLERLLSKI 825
Score = 41 (19.5 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 187 KYLLPDGIALNVSSSGA----TYFMEPKGAVEFNNMEVRLSNSEIAEETAIL 234
+Y+ D ++ + SGA Y AV NN+E+ L+ + + E +L
Sbjct: 708 EYIPLDSDTVSTTRSGAIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLL 759
>FB|FBgn0015546 [details] [associations]
symbol:spel1 "spellchecker1" species:7227 "Drosophila
melanogaster" [GO:0006298 "mismatch repair" evidence=ISS;NAS;IMP]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
[GO:0006301 "postreplication repair" evidence=IBA;NAS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0006311 "meiotic gene conversion" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0042771 "intrinsic apoptotic signaling pathway in
response to DNA damage by p53 class mediator" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0045128 "negative regulation of
reciprocal meiotic recombination" evidence=IBA] [GO:0010224
"response to UV-B" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0042771 EMBL:AE014134 GO:GO:0003684 GO:GO:0006302
GO:GO:0010165 GO:GO:0010224 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0031573
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GeneTree:ENSGT00550000074867 EMBL:U17893
RefSeq:NP_001014482.1 RefSeq:NP_001246031.1 RefSeq:NP_523565.2
UniGene:Dm.2676 ProteinModelPortal:P43248 SMR:P43248 DIP:DIP-21499N
IntAct:P43248 MINT:MINT-1547583 STRING:P43248 PaxDb:P43248
EnsemblMetazoa:FBtr0080630 EnsemblMetazoa:FBtr0309281 GeneID:34842
KEGG:dme:Dmel_CG4215 UCSC:CG4215-RA CTD:34842 FlyBase:FBgn0015546
InParanoid:P43248 OrthoDB:EOG4S1RP5 PhylomeDB:P43248
GenomeRNAi:34842 NextBio:790493 Bgee:P43248 GermOnline:CG4215
Uniprot:P43248
Length = 917
Score = 240 (89.5 bits), Expect = 9.7e-16, Sum P(2) = 9.7e-16
Identities = 65/240 (27%), Positives = 120/240 (50%)
Query: 343 IDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADI 402
+D K E E + +ITGPN GGK+ ++++G A LM+ G ++P + + D IL +
Sbjct: 653 VDFKKE-ECNMFIITGPNMGGKSTYIRSVGTAVLMAHIGAFVPC-SLATISMVDSILGRV 710
Query: 403 GDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL-R 461
G ++ + LSTF + I+ + +SLV+IDE+G GT EG +A SI ++L +
Sbjct: 711 GASDNIIKGLSTFMVEMIETSGIIRTATDKSLVIIDELGRGTSTYEGCGIAWSIAEHLAK 770
Query: 462 DRVGLAVVTTHYADLSCLKDKDTRFENA--ATEFSLETLRPTYRILWGSTGDSNALNIAK 519
+ + TH+ +++ L + + +N A + Y++ G S + +A+
Sbjct: 771 ETKCFTLFATHFHEITKLAETLSTVKNCHMAAVADADDFTLLYQVRSGVMEKSFGIQVAR 830
Query: 520 SIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAAS-LHAEIMDL 578
F ++Q AQ++ E +K E ++L+E+ + Q TA + + + DL
Sbjct: 831 LANFPEHVVQNAQEVYNEFEDEHVDKQKKE-DKALLEKIQVAIQQLSTAGNNVDINVEDL 889
Score = 40 (19.1 bits), Expect = 9.7e-16, Sum P(2) = 9.7e-16
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 197 NVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREI 248
N S Y P ++F ++ SN E+ +I+SLL +R +
Sbjct: 113 NSSDWEIEYRGSPGNLLQFE--DILFSNKEVLVGNSIISLLVKLDGGGQRRV 162
>ZFIN|ZDB-GENE-040426-2932 [details] [associations]
symbol:msh2 "mutS homolog 2 (E. coli)"
species:7955 "Danio rerio" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA;IBA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA;ISS] [GO:0032302 "MutSbeta complex"
evidence=IEA;IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IGI;IDA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0010224 "response to UV-B" evidence=IBA] [GO:0031573 "intra-S
DNA damage checkpoint" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0045190 "isotype switching" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0045128 "negative
regulation of reciprocal meiotic recombination" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0042771 "intrinsic apoptotic
signaling pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0006311 "meiotic gene conversion" evidence=IBA] [GO:0016446
"somatic hypermutation of immunoglobulin genes" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
ZFIN:ZDB-GENE-040426-2932 GO:GO:0005524 GO:GO:0042771 GO:GO:0003684
GO:GO:0006302 GO:GO:0045190 GO:GO:0010165 GO:GO:0010224
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0031573 GO:GO:0008094 GO:GO:0006311
GO:GO:0016446 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HOVERGEN:HBG006399
HSSP:P23909 EMBL:AF412833 IPI:IPI00509799 UniGene:Dr.105564
ProteinModelPortal:Q90XA7 SMR:Q90XA7 STRING:Q90XA7
InParanoid:Q90XA7 ArrayExpress:Q90XA7 Uniprot:Q90XA7
Length = 936
Score = 235 (87.8 bits), Expect = 1.6e-15, Sum P(3) = 1.6e-15
Identities = 59/201 (29%), Positives = 104/201 (51%)
Query: 341 VPIDIK-VECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
+P D+ + E +ITGPN GGK+ ++ +G+ LM++ G ++P + L D +L
Sbjct: 651 IPNDVTFISGEKMFHIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPC-DEAELSVVDCVL 709
Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
A +G S + +STF + IL S +SL++IDE+G GT +G LA +I +Y
Sbjct: 710 ARVGAGDSQIKGVSTFMAEMLETAAILRSASEDSLIIIDELGRGTSTYDGFGLAWAISEY 769
Query: 460 LRDRV-GLAVVTTHYADLSCLKDKDTRFENA-ATEFSLE-TLRPTYRILWGSTGDSNALN 516
+ R+ + TH+ +L+ L + N T + + TL Y++ G S ++
Sbjct: 770 IATRLKSFCLFATHFHELTALAQQVPTVRNLHVTALTTDSTLTMLYKVKKGVCDQSFGIH 829
Query: 517 IAKSIGFDRKIIQRA-QKLVE 536
+A+ F + +I A +K +E
Sbjct: 830 VAELASFPKHVIANAREKALE 850
Score = 46 (21.3 bits), Expect = 1.6e-15, Sum P(3) = 1.6e-15
Identities = 26/101 (25%), Positives = 42/101 (41%)
Query: 17 LEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVS--GQLLSPSEICAVRRTLRA 74
L + +L N AL + Q D + +AG+LN + GQ L I ++ L
Sbjct: 296 LNQYMRLDNAAVQALNLFQGSCDDATGTHSLAGLLNKCRTPQGQRLVNQWI---KQPLID 352
Query: 75 VNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEK 115
N + ++L DS R S +LL+ L + +K
Sbjct: 353 KNKIEERLDLVETFVEDSELRKSCQEDLLRRFPDLNRMAKK 393
Score = 40 (19.1 bits), Expect = 1.6e-15, Sum P(3) = 1.6e-15
Identities = 26/133 (19%), Positives = 55/133 (41%)
Query: 97 SPLLELLKNCNFLTELEEKIGFCIDCKLLI---ILDRASEDLELIRAERKRNMENLDSLL 153
SPL +L+ + ++ +E I +D + L + S D L ++ + NM+ L+ +
Sbjct: 438 SPLNDLISD---FSKFQEMIETTLDMNQVEHHEFLVKPSFDPTL--SDLRENMDRLEKAM 492
Query: 154 KKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAV 213
+ + + G++ K S +G + + +L + T ++ G V
Sbjct: 493 QAALSSAARGLGLEATKTVKLESNAQIGY--FFRVTCKEEKSLRNNKKFTTLDVQKNG-V 549
Query: 214 EFNNMEVRLSNSE 226
F N ++ N E
Sbjct: 550 RFTNSKLSSLNEE 562
>UNIPROTKB|P61667 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000014 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00091 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_952872.1
ProteinModelPortal:P61667 GeneID:2688694 KEGG:gsu:GSU1822
PATRIC:22026501 BioCyc:GSUL243231:GH27-1750-MONOMER Uniprot:P61667
Length = 871
Score = 237 (88.5 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 61/202 (30%), Positives = 110/202 (54%)
Query: 344 DIKVEC-ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADI 402
D++++ E ++V+ITGPN GK+ M+ + L LM++ G ++PA + + D I +
Sbjct: 606 DVQLDNGENQLVIITGPNMAGKSTFMRQVALIVLMAQTGSFVPA-DEASIGVVDRIFTRV 664
Query: 403 GDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD 462
G +L + STF + IL + SLV++DEIG GT +GV++A ++ +YL D
Sbjct: 665 GASDNLARGQSTFMVEMMETAAILRNATPRSLVVLDEIGRGTSTFDGVSIAWAVAEYLHD 724
Query: 463 RVGLAVVT---THYADLSCLKDKDTRFEN---AATEFSLETLRPTYRILWGSTGDSNALN 516
A T THY +L+ L R +N A E++ + + +I+ G S +
Sbjct: 725 TERCAAKTLFATHYHELTELAVTRNRVKNCNVAVKEWNDQVIF-LRKIVEGGASHSYGIQ 783
Query: 517 IAKSIGFDRKIIQRAQKLVERL 538
+A+ G +++I+RA++++ L
Sbjct: 784 VARLAGLPQEVIERAKEILHNL 805
Score = 39 (18.8 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 237 LTAEIAKSEREIKYLMDRVLEIDLA 261
+T E+ + E ++ DR++E++ A
Sbjct: 507 ITPELKEYEEKVLGAEDRIVELEYA 531
>TIGR_CMR|GSU_1822 [details] [associations]
symbol:GSU_1822 "DNA mismatch repair protein MutS"
species:243231 "Geobacter sulfurreducens PCA" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000014 InterPro:IPR000432
InterPro:IPR005748 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00091 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0003684 GO:GO:0006298 GO:GO:0004871
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_952872.1
ProteinModelPortal:P61667 GeneID:2688694 KEGG:gsu:GSU1822
PATRIC:22026501 BioCyc:GSUL243231:GH27-1750-MONOMER Uniprot:P61667
Length = 871
Score = 237 (88.5 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 61/202 (30%), Positives = 110/202 (54%)
Query: 344 DIKVEC-ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADI 402
D++++ E ++V+ITGPN GK+ M+ + L LM++ G ++PA + + D I +
Sbjct: 606 DVQLDNGENQLVIITGPNMAGKSTFMRQVALIVLMAQTGSFVPA-DEASIGVVDRIFTRV 664
Query: 403 GDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD 462
G +L + STF + IL + SLV++DEIG GT +GV++A ++ +YL D
Sbjct: 665 GASDNLARGQSTFMVEMMETAAILRNATPRSLVVLDEIGRGTSTFDGVSIAWAVAEYLHD 724
Query: 463 RVGLAVVT---THYADLSCLKDKDTRFEN---AATEFSLETLRPTYRILWGSTGDSNALN 516
A T THY +L+ L R +N A E++ + + +I+ G S +
Sbjct: 725 TERCAAKTLFATHYHELTELAVTRNRVKNCNVAVKEWNDQVIF-LRKIVEGGASHSYGIQ 783
Query: 517 IAKSIGFDRKIIQRAQKLVERL 538
+A+ G +++I+RA++++ L
Sbjct: 784 VARLAGLPQEVIERAKEILHNL 805
Score = 39 (18.8 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 237 LTAEIAKSEREIKYLMDRVLEIDLA 261
+T E+ + E ++ DR++E++ A
Sbjct: 507 ITPELKEYEEKVLGAEDRIVELEYA 531
>UNIPROTKB|F1PM27 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 Pfam:PF00855 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812
SMART:SM00293 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 EMBL:AAEX03007503
Ensembl:ENSCAFT00000004197 Uniprot:F1PM27
Length = 1263
Score = 220 (82.5 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 65/227 (28%), Positives = 106/227 (46%)
Query: 338 DFPVPIDIKVECETR--------VVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389
DF +P DI + CE V++TGPN GGK+ M+ GL ++M++ G Y+PA+
Sbjct: 1036 DF-IPNDILIGCEEEEEENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVC 1094
Query: 390 PRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEG 449
RL D + +G + STF +S IL + SLVL+DE+G GT +G
Sbjct: 1095 -RLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLVLVDELGRGTATFDG 1153
Query: 450 VALATSILQYLRDRVGLAVV-TTHYADL--SCLKDKDTRF-------ENAATEFSLETLR 499
A+A ++++ L + + + +THY L ++ R EN + S ET+
Sbjct: 1154 TAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPSQETIT 1213
Query: 500 PTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHR 546
Y+ + G+ S N A+ ++IQ+ + Q R
Sbjct: 1214 FLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMTQSLR 1260
Score = 61 (26.5 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 30/131 (22%), Positives = 56/131 (42%)
Query: 6 VQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEI 65
+ PFGK L + Q L + A+ + LD IED+ ++ +S ++
Sbjct: 690 IDTCHTPFGKRLLK-QWLCAPLCSPYAI--NDRLD--AIEDLM-VVPDKISDVADLLKKL 743
Query: 66 CAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLL 125
+ R L ++NV L D ++ K +FL+ LE GF + CK++
Sbjct: 744 PDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALE---GFKVICKII 800
Query: 126 IILDRASEDLE 136
I++ ++ +
Sbjct: 801 EIMEEVVDNFK 811
Score = 37 (18.1 bits), Expect = 7.4e-13, Sum P(2) = 7.4e-13
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 139 RAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASH 186
+ E R M+ D L K + + D+P + M VG A+H
Sbjct: 97 KPEILRAMQRADEALNKDKIERLELAVCDEPSEPEEEEEMEVG--ATH 142
>TIGR_CMR|NSE_0335 [details] [associations]
symbol:NSE_0335 "DNA mismatch repair protein MutS"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0005524
"ATP binding" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_506224.1 STRING:Q2GE72
GeneID:3931998 KEGG:nse:NSE_0335 PATRIC:22680759
ProtClustDB:CLSK2528033 BioCyc:NSEN222891:GHFU-360-MONOMER
Uniprot:Q2GE72
Length = 815
Score = 231 (86.4 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 56/199 (28%), Positives = 104/199 (52%)
Query: 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
VP D+ RV V+TGPN GK+ ++ L +++++ G ++PA + + D + +
Sbjct: 599 VPNDLAFTSAERVCVLTGPNMAGKSTYLRQNALITILAQMGSFVPADS-AHIGVVDRVFS 657
Query: 401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460
IG ++ STF + +I+ + SLV++DE+G GT +G+++A ++L+YL
Sbjct: 658 RIGASDNIAMGKSTFMVEMMETANIVNNATCRSLVILDEVGRGTSTLDGISIAQAVLEYL 717
Query: 461 RDRVGLAVV-TTHYADLSCLKDKDTRFENAATEFSL--ETLRPTYRILWGSTGDSNALNI 517
D V + THY +L L+ K R + + E + + Y+I+ G +S ++
Sbjct: 718 HDSVNCKTIFATHYNELCDLESKLPRMKCYSIEVKRWRDEVLLMYKIVPGRGDNSYGIHT 777
Query: 518 AKSIGFDRKIIQRAQKLVE 536
A G II+RA ++ +
Sbjct: 778 AMLSGIPEAIIRRATEIAK 796
Score = 44 (20.5 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 213 VEFNNMEVRLS--NSEIAE-ETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQ 269
+E N+E +++ N + E + L +I SE +K ++ + E+D+ A FA+
Sbjct: 508 LELQNLEAQIAKANENYRKLELELFRELCGKILASEGPLKEMIAAIAELDVI---ASFAE 564
Score = 41 (19.5 bits), Expect = 5.2e-15, Sum P(2) = 5.2e-15
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 227 IAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCP 276
IAE I S AEIA + ++ +D E+ ++ R F + ++ P
Sbjct: 553 IAELDVIASF--AEIAVQRKYVRPQVDNSNELRISGGRHPFVEQVNAFVP 600
>TIGR_CMR|ECH_0824 [details] [associations]
symbol:ECH_0824 "DNA mismatch repair protein MutS"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0005524
"ATP binding" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:YP_507620.1
ProteinModelPortal:Q2GG13 STRING:Q2GG13 GeneID:3926941
KEGG:ech:ECH_0824 PATRIC:20577070
BioCyc:ECHA205920:GJNR-827-MONOMER Uniprot:Q2GG13
Length = 804
Score = 228 (85.3 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
Identities = 57/203 (28%), Positives = 108/203 (53%)
Query: 344 DIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIG 403
DI + RV +ITGPN GK+ ++ L +++ G ++PA+ H + D + + +G
Sbjct: 600 DIDLSLMQRVHLITGPNMAGKSTFLRQNALIGILAHIGSFVPAQ-HAHIGVIDKVFSRVG 658
Query: 404 DHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD- 462
++ STF ++ I+ + +S V++DEIG GT +G+++A S+++ + +
Sbjct: 659 ASDNIASGHSTFMVEMTETAAIINQATDKSFVILDEIGRGTGTYDGLSIAWSVIEQIHNV 718
Query: 463 RVGLAVVTTHYADLSCLKDKDTRFENA------ATEFSLETLRPTYRILWGSTGDSNALN 516
A+ THY +LS L D EN E++ + + + I+ GST S ++
Sbjct: 719 NKSRAIFATHYHELSKL---DRYLENIKCFCMKVEEWNGKVVF-LHEIIPGSTNKSYGIH 774
Query: 517 IAKSIGFDRKIIQRAQKLVERLR 539
+AK GF + ++ RA+ L+ +L+
Sbjct: 775 VAKLAGFPQSVLDRAEDLMSKLK 797
Score = 46 (21.3 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
Identities = 33/124 (26%), Positives = 56/124 (45%)
Query: 41 LSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVWKKLTEA-AELDGD---SLQRY 96
L I DI IL G+ SP ++ A++ TL + + L + + + GD L +Y
Sbjct: 345 LRGIADIERILTRIKVGKC-SPKDLYALKLTLDKIFVLLDLLHKFDSSVVGDFCSRLGKY 403
Query: 97 SPLLELLKNC---NFLTELEEKIGFC---IDCKL--LIILDRASEDLELIRAERKRNMEN 148
L + L + N + +++ GF D +L I + S DL ++ RN+ N
Sbjct: 404 DDLCKTLDDVLIPNNVNNVKDG-GFINPDYDAQLSEYIYIQSYSNDLIQELRDKYRNITN 462
Query: 149 LDSL 152
+ SL
Sbjct: 463 IQSL 466
>POMBASE|SPBC19G7.01c [details] [associations]
symbol:msh2 "MutS protein homolog 2" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=ISO] [GO:0000400 "four-way junction DNA binding"
evidence=ISO] [GO:0000403 "Y-form DNA binding" evidence=ISO]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IGI;IMP] [GO:0007534 "gene
conversion at mating-type locus" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IMP] [GO:0000404
"loop DNA binding" evidence=ISO] [GO:0032135 "DNA insertion or
deletion binding" evidence=ISO] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO] [GO:0032138 "single base insertion
or deletion binding" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPBC19G7.01c
GO:GO:0005829 GO:GO:0005524 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0016887 GO:GO:0006298 GO:GO:0030983 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032301 HOGENOM:HOG000196498 KO:K08735
GO:GO:0032302 GO:GO:0000406 OrthoDB:EOG4S7NZ5 EMBL:AJ006948
PIR:T43699 RefSeq:XP_001713136.1 ProteinModelPortal:O74773
STRING:O74773 EnsemblFungi:SPBC19G7.01c.1 GeneID:2540695
KEGG:spo:SPBC19G7.01c OMA:HINERLD NextBio:20801818 GO:GO:0007534
Uniprot:O74773
Length = 982
Score = 236 (88.1 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 59/208 (28%), Positives = 110/208 (52%)
Query: 341 VPIDIKVEC-ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
+P D+ +E + +++ITGPN GGK+ ++ +G+ ++M++ G +P + L D IL
Sbjct: 703 IPNDVNLEHGSSELLIITGPNMGGKSTYIRQVGVITVMAQIGCPVPCEVAD-LDIIDAIL 761
Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
A +G S + +STF + IL + SL++IDE+G GT ++G LA +I ++
Sbjct: 762 ARVGASDSQLKGISTFMAEMLETATILRAATPRSLIIIDELGRGTSTTDGFGLAWAITEH 821
Query: 460 LRDRVG-LAVVTTHYADLSCLKDKDTRFENA-ATEF----SLETLRPTYRILWGSTGDSN 513
+ ++G + THY +++ L ++ T +N T + + + Y + G++ S
Sbjct: 822 IVTQIGCFCLFATHYHEMTKLSEEITTVKNLHVTAYVGDSESKDVALLYNVCEGASDRSF 881
Query: 514 ALNIAKSIGFDRKIIQRAQKLVERLRPE 541
+++AK F KII+ A L E
Sbjct: 882 GIHVAKLAHFPPKIIEMASNKAAELEAE 909
Score = 40 (19.1 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 28/118 (23%), Positives = 44/118 (37%)
Query: 131 ASEDLELIRAERKRNMENLDSLLKKVAAQIFQA---GGIDKPL--ITKR--RSRMCVGIK 183
A EL++ NM+ L+ LL Q A + L +T R + + +G+
Sbjct: 103 AKTGFELLKQASPGNMQMLEDLLVSENYQESTAISDSSVSSVLLAVTTRVKQDQRIIGVA 162
Query: 184 ASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEI 241
L G++ V S T F V + S E + +S+ TAEI
Sbjct: 163 FIDPILKKLGVSEFVDSDAYTNFEALIVQVGAKECIISQSGHESTNGNSAVSINTAEI 220
>UNIPROTKB|O13396 [details] [associations]
symbol:msh-2 "DNA mismatch repair protein msh-2"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0030466 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 EMBL:AF030634 EMBL:AABX02000010
RefSeq:XP_959643.1 UniGene:Ncr.25288 ProteinModelPortal:O13396
STRING:O13396 EnsemblFungi:EFNCRT00000003090 GeneID:3875790
KEGG:ncr:NCU02230 OrthoDB:EOG4S7NZ5 GO:GO:0000735 Uniprot:O13396
Length = 937
Score = 226 (84.6 bits), Expect = 4.6e-15, P = 4.6e-15
Identities = 47/140 (33%), Positives = 84/140 (60%)
Query: 350 ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLE 409
++ ++ITGPN GGK+ ++ +G+ +LM++ G ++P + L FD ILA +G S
Sbjct: 651 DSSFLIITGPNMGGKSTYIRQIGVIALMAQIGCFVPCSS-AELTIFDSILARVGASDSQL 709
Query: 410 QNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG-LAV 468
+ +STF + +IL+ + ESL++IDE+G GT +G LA +I +++ +G A+
Sbjct: 710 KGVSTFMAEMLETANILKSATAESLIIIDELGRGTSTYDGFGLAWAISEHIVKEIGCFAL 769
Query: 469 VTTHYADLSCLKDKDTRFEN 488
TH+ +L+ L D+ +N
Sbjct: 770 FATHFHELTALADQYPNVKN 789
>UNIPROTKB|J9P5H1 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 SMART:SM00533 SMART:SM00534
Pfam:PF00855 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AAEX03007503
Ensembl:ENSCAFT00000043509 Uniprot:J9P5H1
Length = 1279
Score = 217 (81.4 bits), Expect = 5.2e-15, Sum P(2) = 5.2e-15
Identities = 70/249 (28%), Positives = 117/249 (46%)
Query: 338 DFPVPIDIKVECETR--------VVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389
DF +P DI + CE V++TGPN GGK+ M+ GL ++M++ G Y+PA+
Sbjct: 1026 DF-IPNDILIGCEEEEEENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVC 1084
Query: 390 PRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDE-IGSGTDPSE 448
RL D + +G + STF +S IL + SLVL+DE +G GT +
Sbjct: 1085 -RLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLVLVDELVGRGTATFD 1143
Query: 449 GVALATSILQYLRDRVGLAVV-TTHYADL--SCLKDKDTRF-------ENAATEFSLETL 498
G A+A ++++ L + + + +THY L ++ R EN + S ET+
Sbjct: 1144 GTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPSQETI 1203
Query: 499 RPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQS--LME 556
Y+ + G+ S N A+ ++IQ+ + Q R L++ L
Sbjct: 1204 TFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMTQSLR---LFREVCLAS 1260
Query: 557 ERRKLESQA 565
ER ++++A
Sbjct: 1261 ERSTVDAEA 1269
Score = 61 (26.5 bits), Expect = 5.2e-15, Sum P(2) = 5.2e-15
Identities = 30/131 (22%), Positives = 56/131 (42%)
Query: 6 VQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEI 65
+ PFGK L + Q L + A+ + LD IED+ ++ +S ++
Sbjct: 680 IDTCHTPFGKRLLK-QWLCAPLCSPYAI--NDRLD--AIEDLM-VVPDKISDVADLLKKL 733
Query: 66 CAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLL 125
+ R L ++NV L D ++ K +FL+ LE GF + CK++
Sbjct: 734 PDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALE---GFKVICKII 790
Query: 126 IILDRASEDLE 136
I++ ++ +
Sbjct: 791 EIMEEVVDNFK 801
Score = 37 (18.1 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 139 RAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASH 186
+ E R M+ D L K + + D+P + M VG A+H
Sbjct: 87 KPEILRAMQRADEALNKDKIERLELAVCDEPSEPEEEEEMEVG--ATH 132
>TIGR_CMR|VC_0535 [details] [associations]
symbol:VC_0535 "DNA mismatch repair protein MutS"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
OMA:ITQTVRD PIR:B82312 RefSeq:NP_230186.1 ProteinModelPortal:Q9KUI6
SMR:Q9KUI6 DNASU:2615204 GeneID:2615204 KEGG:vch:VC0535
PATRIC:20080174 Uniprot:Q9KUI6
Length = 862
Score = 231 (86.4 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 61/198 (30%), Positives = 104/198 (52%)
Query: 345 IKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGD 404
I++ + R+++ITGPN GGK+ M+ L +LM+ G Y+PA++ P D I IG
Sbjct: 608 IELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSYVPAESASIGP-LDRIFTRIGA 666
Query: 405 HQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRV 464
L STF ++ +IL +R SLVL+DEIG GT +G++LA + ++L +
Sbjct: 667 SDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGTSTYDGLSLAWASAEWLAKEI 726
Query: 465 G-LAVVTTHYADLSCLKDKDTRFENA---ATEFSLETLRPTYRILWGSTGDSNALNIAKS 520
G + + THY +L+ L + N A E + + + + G+ S L +A
Sbjct: 727 GAMTLFATHYFELTELPNVLPHLANVHLDAVEHG-DGIAFMHAVQEGAASKSYGLAVAGL 785
Query: 521 IGFDRKIIQRAQKLVERL 538
G + +I+ A+ +++L
Sbjct: 786 AGVPKPVIKNARAKLQQL 803
Score = 37 (18.1 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 70 RTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFC 119
R L +W++L + + LQ+ + + L L E E + +C
Sbjct: 526 RALALEKQLWEELFDLLMPHLEQLQQLAASVAQLDVLQNLAERAENLEYC 575
>UNIPROTKB|A9WFZ9 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:324602 "Chloroflexus aurantiacus J-10-fl" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:CP000909 GenomeReviews:CP000909_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:YP_001636542.1 ProteinModelPortal:A9WFZ9
STRING:A9WFZ9 GeneID:5827426 KEGG:cau:Caur_2954 PATRIC:21417221
ProtClustDB:CLSK2477234 BioCyc:CAUR324602:GIXU-3001-MONOMER
Uniprot:A9WFZ9
Length = 966
Score = 225 (84.3 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 62/211 (29%), Positives = 110/211 (52%)
Query: 343 IDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADI 402
ID+ E + ++++ITGPN GK+ ++ + L +LM++ G ++PA + + D I I
Sbjct: 695 IDLDGE-QAQILIITGPNMAGKSTFLRQVALITLMAQIGSFVPA-DEAEIGLVDRIFTRI 752
Query: 403 GDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD 462
G + STF ++ +L + SL+++DE+G GT +G+A+A ++++Y+ D
Sbjct: 753 GAQDDIATGQSTFMVEMTETAALLMQSTPRSLIILDEVGRGTSTYDGMAIARAVVEYIHD 812
Query: 463 --RVGLAVV-TTHYADLSCLKDKDTRFEN---AATEFS-----LETLRPTYRILWGSTGD 511
R+G + THY +L L+ + R N AA E L LRP G
Sbjct: 813 HPRLGCRTLFATHYHELIALERELPRVRNYHMAAVERDGRVVFLHELRP------GGADR 866
Query: 512 SNALNIAKSIGFDRKIIQRAQKLVERLRPER 542
S +++A+ G ++I+RA L+ L +R
Sbjct: 867 SYGIHVAELAGIPPEVIRRASALLADLEGQR 897
Score = 44 (20.5 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 15/74 (20%), Positives = 35/74 (47%)
Query: 165 GID-KPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLS 223
G+D +PL T+ + + + + + AL V +GA ++P+ N+E+ S
Sbjct: 294 GLDGRPLATRAAGALLQYAQVTQRQRVSQLRALRVYHTGAYMLLDPQTR---RNLELLES 350
Query: 224 NSEIAEETAILSLL 237
+ +++++L
Sbjct: 351 GGRQGAKASLIAVL 364
Score = 38 (18.4 bits), Expect = 8.1e-14, Sum P(2) = 8.1e-14
Identities = 9/42 (21%), Positives = 22/42 (52%)
Query: 21 QKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSP 62
Q+L ++ L +++ ++ I+ +A + AV G+ + P
Sbjct: 623 QRLCDELQPHLDRLRATIAAVARIDALAALAEVAVRGRYVQP 664
>UNIPROTKB|Q752H0 [details] [associations]
symbol:AFR603C "AFR603Cp" species:284811 "Ashbya gossypii
ATCC 10895" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0000735 "removal of nonhomologous ends"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0006301 "postreplication repair" evidence=IBA] [GO:0006311
"meiotic gene conversion" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0030466 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
EMBL:AE016819 GenomeReviews:AE016819_GR SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 OrthoDB:EOG4S7NZ5
GO:GO:0000735 RefSeq:NP_986150.1 ProteinModelPortal:Q752H0
STRING:Q752H0 EnsemblFungi:AAS53974 GeneID:4622435
KEGG:ago:AGOS_AFR603C PhylomeDB:Q752H0 Uniprot:Q752H0
Length = 956
Score = 229 (85.7 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
Identities = 68/271 (25%), Positives = 135/271 (49%)
Query: 344 DIKVECETR-VVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADI 402
D+ +E ++ +ITGPN GGK+ ++ +G+ L+++ G ++P + + D IL +
Sbjct: 668 DVVLEADSSGFAIITGPNMGGKSTYIRQVGVICLLAQIGCFVPC-DAAEITIVDAILCRV 726
Query: 403 GDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD 462
G S + +STF + IL ++ SL++IDE+G GT +G LA SI +++
Sbjct: 727 GAGDSQLKGVSTFMAEMLETASILRNATKNSLIIIDELGRGTSTYDGFGLAWSISEHIAK 786
Query: 463 RVG-LAVVTTHYADLSCLKDKDTRFEN----AATE---FSLETLRPTYRILWGSTGDSNA 514
+G A+ TH+ +L+ L D N A E + + Y++ G + S
Sbjct: 787 NIGCFALFATHFHELTALADDCPNVTNLHVVAHVEEKSHKSDDITLLYKVEPGISDQSFG 846
Query: 515 LNIAKSIGFDRKIIQRAQKLVERL---RPERQQHRKSELY-QSLMEERRKLESQARTAAS 570
+++A+ + F KI++ A++ L + E + +K + + + + L++ + AS
Sbjct: 847 IHVAEVVQFPSKIVKMAKRKATELDDIKEETECLKKLKCSPEHIAKGSEVLKNLLQEWAS 906
Query: 571 -LHAEIMDLYREDSTSASISVYRYQFAVTST 600
L AE +D +D + + + + + V S+
Sbjct: 907 ILRAENLDQQLDDESIQELCIDKLRSLVNSS 937
Score = 37 (18.1 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 144 RNMENLDSLLKKVAAQIFQAG 164
RN E+ + LKKV I + G
Sbjct: 201 RNNESFSAELKKVTGVIERCG 221
>MGI|MGI:109519 [details] [associations]
symbol:Msh3 "mutS homolog 3 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003677 "DNA binding" evidence=IGI] [GO:0003684
"damaged DNA binding" evidence=IGI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006298
"mismatch repair" evidence=ISO;IGI;IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IMP]
[GO:0019237 "centromeric DNA binding" evidence=IDA] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=ISO;IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=ISO;IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0051096 "positive regulation of helicase
activity" evidence=ISO] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 MGI:MGI:109519 GO:GO:0005524 GO:GO:0003684
GO:GO:0019237 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 KO:K08736
CTD:4437 HOVERGEN:HBG006400 OrthoDB:EOG434W57 GO:GO:0016447
EMBL:M80360 EMBL:L10319 EMBL:L10295 EMBL:L10296 EMBL:L10297
EMBL:L10298 EMBL:L10299 EMBL:L10300 EMBL:L10301 EMBL:L10304
EMBL:L10305 EMBL:L10306 EMBL:L10307 EMBL:L10308 EMBL:L10309
EMBL:L10310 EMBL:L10311 EMBL:L10312 EMBL:L10313 EMBL:L10314
EMBL:L10315 EMBL:L10316 EMBL:L10317 EMBL:L10318 EMBL:M24919
IPI:IPI00896729 PIR:A32495 RefSeq:NP_034959.2 UniGene:Mm.343101
ProteinModelPortal:P13705 SMR:P13705 STRING:P13705
PhosphoSite:P13705 PaxDb:P13705 PRIDE:P13705 GeneID:17686
KEGG:mmu:17686 InParanoid:P13705 ChiTaRS:MSH3 NextBio:292256
CleanEx:MM_MSH3 Genevestigator:P13705 GermOnline:ENSMUSG00000014850
Uniprot:P13705
Length = 1091
Score = 218 (81.8 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 51/162 (31%), Positives = 90/162 (55%)
Query: 322 VENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAG 381
++N + + G D VP + RV++ITGPN GGK++ +K + L ++M++ G
Sbjct: 814 IKNGRHPMIDVLLGEQDQFVPNSTSLSDSERVMIITGPNMGGKSSYIKQVTLVTIMAQIG 873
Query: 382 LYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIG 441
Y+PA+ + D I +G ++ + STF ++ +I+ S +SLV++DE+G
Sbjct: 874 SYVPAEE-ATIGIVDGIFTRMGAADNIYKGRSTFMEQLTDTAEIIRRASPQSLVILDELG 932
Query: 442 SGTDPSEGVALATSILQY-LRDRVGLAVVTTHYADLSCLKDK 482
GT +G+A+A + L+Y +RD L + THY + C +K
Sbjct: 933 RGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPV-CELEK 973
Score = 50 (22.7 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 502 YRILWGSTGDSNALNIAKSIGFDRKIIQRA 531
Y+I G S LN+AK R+++Q+A
Sbjct: 1011 YQITRGIAARSYGLNVAKLADVPREVLQKA 1040
>DICTYBASE|DDB_G0268614 [details] [associations]
symbol:msh6 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;ISS] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0032301 "MutSalpha
complex" evidence=ISS;IBA] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0045910 "negative
regulation of DNA recombination" evidence=IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0032138
"single base insertion or deletion binding" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0268614
GO:GO:0005524 GO:GO:0009411 GenomeReviews:CM000150_GR GO:GO:0003684
EMBL:AAFI02000003 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
HSSP:Q56215 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 RefSeq:XP_647085.1 STRING:Q55GU9 PRIDE:Q55GU9
EnsemblProtists:DDB0229918 GeneID:8615889 KEGG:ddi:DDB_G0268614
ProtClustDB:CLSZ2497299 Uniprot:Q55GU9
Length = 1260
Score = 225 (84.3 bits), Expect = 5.0e-14, Sum P(2) = 5.0e-14
Identities = 58/209 (27%), Positives = 109/209 (52%)
Query: 333 SKGISDFPVPIDIKVECETR---VVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389
SK DF +P DI + E ++V+TGPN GGK+ ++ + +M++ G Y+ A +
Sbjct: 1000 SKSGDDF-IPNDISLNTENNPPSLMVLTGPNMGGKSTLLRQSCILVIMAQMGCYVSASSC 1058
Query: 390 PRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEG 449
+ D I +G + ++ STF ++ +L+ ++ SLV++DE+G GT +G
Sbjct: 1059 -EMSIVDRIFTRLGANDNILAGQSTFMVELAETSAVLKYATKRSLVILDELGRGTSTFDG 1117
Query: 450 VALATSILQYLRDRV-GLAVVTTHYADLS---CLKDK-DTRFENAATEFSLETLRPTYRI 504
++A S+L YL +V + + THY L+ ++D T + + + + Y++
Sbjct: 1118 YSIAYSVLNYLATKVQSMCIFATHYQSLAYEPTVRDLISTAYMTCHVDEEAKKVIFLYKL 1177
Query: 505 LWGSTGDSNALNIAKSIGFDRKIIQRAQK 533
G +S L++A G R+II +A++
Sbjct: 1178 ASGVCPNSYGLHVASMAGLPREIITKAEE 1206
Score = 43 (20.2 bits), Expect = 5.0e-14, Sum P(2) = 5.0e-14
Identities = 30/159 (18%), Positives = 69/159 (43%)
Query: 145 NMENLD-SLLKKVAAQI--FQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSS 201
N+++L+ S K + Q F+ I+ + K ++ + + + K LP G +L SSS
Sbjct: 844 NIQSLEQSFAKHLEEQKAHFKCNKIEYKHMGKEIYQIEIPVAFTKK--LPAGFSLKSSSS 901
Query: 202 GATYFMEPKGAVEFNNM-EVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEID- 259
+ P ++ E R + +++E +L + + A + + ++ ++D
Sbjct: 902 KVNRYHSPFVTKNLTSLLEERDTYEVLSKE--VLKKILSNFAIYFNHFQIAITKLSQLDC 959
Query: 260 -LAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKH 297
L+ + F + P+ S F I+++ ++H
Sbjct: 960 LLSLYKVSFQSSIQMCRPLFVSSDQRGF---IDVKDMRH 995
>ZFIN|ZDB-GENE-020905-3 [details] [associations]
symbol:msh6 "mutS homolog 6 (E. coli)" species:7955
"Danio rerio" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0032137
"guanine/thymine mispair binding" evidence=IGI] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=IBA] [GO:0032301 "MutSalpha
complex" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0045190 "isotype switching" evidence=IBA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 ZFIN:ZDB-GENE-020905-3 GO:GO:0005524
GO:GO:0009411 GO:GO:0008630 GO:GO:0003684 GO:GO:0045190
GO:GO:0007131 GO:GO:0000228 InterPro:IPR000313 PROSITE:PS50812
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 GO:GO:0016446
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 HSSP:P23909 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
HOVERGEN:HBG000101 EMBL:AF412834 IPI:IPI00513357 UniGene:Dr.4108
ProteinModelPortal:Q90XA6 SMR:Q90XA6 STRING:Q90XA6
InParanoid:Q90XA6 ArrayExpress:Q90XA6 Uniprot:Q90XA6
Length = 1369
Score = 218 (81.8 bits), Expect = 5.7e-14, P = 5.7e-14
Identities = 66/232 (28%), Positives = 112/232 (48%)
Query: 354 VVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLS 413
V++TGPN GGK+ M+ GL ++++ G Y+PA++ RL D + +G + S
Sbjct: 1139 VLVTGPNMGGKSTLMRQCGLVVILAQLGCYVPAESL-RLTPVDRVFTRLGASDRIMSGES 1197
Query: 414 TFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVV-TTH 472
TF +S IL + SLVL+DE+G GT +G A+A+++++ L +++ + +TH
Sbjct: 1198 TFFVELSETASILLHATNHSLVLLDELGRGTATYDGTAIASAVVKELSEKICCRTLFSTH 1257
Query: 473 YADL--SCLKDKDTRF-------ENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGF 523
Y L ++D R EN + S ET+ Y+ + G+ S N A+
Sbjct: 1258 YHSLVEDHVQDPAVRLGHMACMVENECEDPSQETITFLYKFIRGACPKSYGFNAARLANI 1317
Query: 524 DRKIIQRAQKLV---ERLRPERQQHRK-SELYQSLMEERRKLESQARTAASL 571
+IQ K ER + +K +S ER +L + +T +L
Sbjct: 1318 PEDVIQSGHKKARDFERSTVSLRIFKKLCSFAESPRAEREQLTTLIQTLRNL 1369
>RGD|2322311 [details] [associations]
symbol:Msh6 "mutS homolog 6 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003682 "chromatin
binding" evidence=ISO] [GO:0003684 "damaged DNA binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA;ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair"
evidence=IEA;ISO] [GO:0008340 "determination of adult lifespan"
evidence=ISO] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=ISO] [GO:0009411 "response to UV"
evidence=ISO] [GO:0016446 "somatic hypermutation of immunoglobulin
genes" evidence=ISO] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=ISO] [GO:0030983 "mismatched
DNA binding" evidence=IEA;ISO] [GO:0032137 "guanine/thymine mispair
binding" evidence=ISO] [GO:0032301 "MutSalpha complex"
evidence=ISO] [GO:0045190 "isotype switching" evidence=ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0051096 "positive regulation of helicase
activity" evidence=ISO] [GO:0097193 "intrinsic apoptotic signaling
pathway" evidence=ISO] [GO:0042803 "protein homodimerization
activity" evidence=ISO] [GO:0043570 "maintenance of DNA repeat
elements" evidence=ISO] [GO:0000287 "magnesium ion binding"
evidence=ISO] [GO:0000400 "four-way junction DNA binding"
evidence=ISO] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0032142 "single guanine insertion binding" evidence=ISO]
[GO:0032143 "single thymine insertion binding" evidence=ISO]
[GO:0032357 "oxidized purine DNA binding" evidence=ISO] [GO:0032405
"MutLalpha complex binding" evidence=ISO] [GO:0043531 "ADP binding"
evidence=ISO] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 RGD:2322311 GO:GO:0005524 GO:GO:0008340
GO:GO:0009411 GO:GO:0008630 GO:GO:0000287 GO:GO:0043531
GO:GO:0003682 GO:GO:0016887 GO:GO:0006298 GO:GO:0000790
GO:GO:0045190 InterPro:IPR000313 PROSITE:PS50812 GO:GO:0045910
SMART:SM00293 EMBL:CH473947 GO:GO:0016446 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0032301 Gene3D:3.40.1170.10
SUPFAM:SSF55271 GO:GO:0032357 GO:GO:0032142 GO:GO:0032143
GO:GO:0051096 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 OrthoDB:EOG4CG07F IPI:IPI00369351
RefSeq:XP_002726765.1 RefSeq:XP_002729643.2
Ensembl:ENSRNOT00000021923 GeneID:100360342 KEGG:rno:100360342
UCSC:RGD:2322311 Uniprot:D4A0U9
Length = 1361
Score = 228 (85.3 bits), Expect = 7.5e-14, Sum P(2) = 7.5e-14
Identities = 70/248 (28%), Positives = 122/248 (49%)
Query: 338 DFPVPIDIKVECETRV--------VVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389
DF +P DI + CE V++TGPN GGK+ ++ GL ++M++ G Y+PA+
Sbjct: 1108 DF-IPNDILIGCEEDAEADGKAYCVLVTGPNMGGKSTLIRQAGLLAVMAQMGCYVPAELC 1166
Query: 390 PRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEG 449
RL D + +G + STF +S IL + SLVL+DE+G GT +G
Sbjct: 1167 -RLTPVDRVFTRLGASDRIMSGESTFFVELSETASILRHATAHSLVLVDELGRGTATFDG 1225
Query: 450 VALATSILQYLRDRVGLAVV-TTHY----ADLS---CLK--DKDTRFENAATEFSLETLR 499
A+A+++++ L + + + +THY D S C++ EN + S ET+
Sbjct: 1226 TAIASAVVKELAETIKCRTLFSTHYHSLVEDYSKNVCVRLGHMACMVENECEDPSQETIT 1285
Query: 500 PTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQS--LMEE 557
Y+ + G+ S N A+ ++IQ+ + + R + ++ +L++ L E
Sbjct: 1286 FLYKFIKGACPKSYGFNAARLANLPEEVIQKGHR---KAREFERMNQALQLFREVCLASE 1342
Query: 558 RRKLESQA 565
R + S+A
Sbjct: 1343 RPTVNSEA 1350
Score = 39 (18.8 bits), Expect = 7.5e-14, Sum P(2) = 7.5e-14
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 139 RAERKRNMENLDSLLKKVAAQIFQAGGIDKP 169
++E R M+ D L K AQ + D+P
Sbjct: 167 KSEILRAMQRADEALSKDKAQRLELAVCDEP 197
Score = 38 (18.4 bits), Expect = 9.5e-14, Sum P(2) = 9.5e-14
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 73 RAVNNVWKKLTEA-AELDGDSLQRYSPLLELLK 104
R + + K T+ + LDGD + YS L LK
Sbjct: 513 REICRIITKGTQTYSVLDGDPSENYSRYLLSLK 545
Score = 37 (18.1 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 53 SAVSGQLLSPSEICAVRRTLRAVNNVWKKLTEAAEL 88
SA+S +L + ++ AV + V ++ KKL + L
Sbjct: 786 SAISDRLDAIEDLMAVPDKVAEVADLLKKLPDLERL 821
>TAIR|locus:2087193 [details] [associations]
symbol:MSH1 "AT3G24320" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0006298 "mismatch repair" evidence=ISS] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0032042 "mitochondrial DNA metabolic process"
evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0000002 "mitochondrial genome
maintenance" evidence=IGI;IMP] [GO:0009408 "response to heat"
evidence=IGI] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=RCA] [GO:0006261 "DNA-dependent DNA
replication" evidence=RCA] [GO:0006275 "regulation of DNA
replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0009555 "pollen development" evidence=RCA]
[GO:0016444 "somatic cell DNA recombination" evidence=RCA]
[GO:0016568 "chromatin modification" evidence=RCA] [GO:0016572
"histone phosphorylation" evidence=RCA] [GO:0031047 "gene silencing
by RNA" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0051567 "histone
H3-K9 methylation" evidence=RCA] [GO:0051726 "regulation of cell
cycle" evidence=RCA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 PROSITE:PS00486
SMART:SM00534 InterPro:IPR000305 Pfam:PF01541 GO:GO:0005739
GO:GO:0005524 GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0009411 GO:GO:0003684 GO:GO:0009408 EMBL:AP000382
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 SUPFAM:SSF82771 eggNOG:COG0249 GO:GO:0000400
GO:GO:0032042 GO:GO:0032137 GO:GO:0000710 EMBL:AY191303
IPI:IPI00526404 RefSeq:NP_189075.2 UniGene:At.43463 HSSP:Q56215
ProteinModelPortal:Q84LK0 SMR:Q84LK0 STRING:Q84LK0 PaxDb:Q84LK0
PRIDE:Q84LK0 EnsemblPlants:AT3G24320.1 GeneID:822021
KEGG:ath:AT3G24320 GeneFarm:4139 TAIR:At3g24320
HOGENOM:HOG000264796 InParanoid:Q84LK0 OMA:RGTETAK PhylomeDB:Q84LK0
ProtClustDB:CLSN2680862 Genevestigator:Q84LK0 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 Uniprot:Q84LK0
Length = 1118
Score = 223 (83.6 bits), Expect = 7.7e-14, Sum P(2) = 7.7e-14
Identities = 59/183 (32%), Positives = 101/183 (55%)
Query: 355 VITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLST 414
++TGPN GGK++ ++++ A+L+ +GL +PA++ +P FD I+ + + S S+
Sbjct: 765 LLTGPNGGGKSSLLRSICAAALLGISGLMVPAES-ACIPHFDSIMLHMKSYDSPVDGKSS 823
Query: 415 FSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG-LAVVTTHY 473
F +S I I+ + SLVLIDEI GT+ ++G +A S+++ L D G L +V+TH
Sbjct: 824 FQVEMSEIRSIVSQATSRSLVLIDEICRGTETAKGTCIAGSVVESL-DTSGCLGIVSTHL 882
Query: 474 ADLSCLK--DKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRA 531
+ L K+ ++ E +PT+++ G +S A AK G +IQRA
Sbjct: 883 HGIFSLPLTAKNITYKAMGAENVEGQTKPTWKLTDGVCRESLAFETAKREGVPESVIQRA 942
Query: 532 QKL 534
+ L
Sbjct: 943 EAL 945
Score = 42 (19.8 bits), Expect = 7.7e-14, Sum P(2) = 7.7e-14
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 151 SLLKKVAAQIFQAGGIDKPLITKRRSRMC 179
S+ + + A G ++ L+TK R+R C
Sbjct: 262 SIFETMKAYSLDDGLTEEALVTKLRTRRC 290
>FB|FBgn0036486 [details] [associations]
symbol:Msh6 "Msh6" species:7227 "Drosophila melanogaster"
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006301 "postreplication
repair" evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IMP] [GO:0032138
"single base insertion or deletion binding" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009411 GO:GO:0008630 EMBL:AE014296 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 EMBL:BT050543 RefSeq:NP_648755.1 UniGene:Dm.966
ProteinModelPortal:Q9VUM0 SMR:Q9VUM0 DIP:DIP-23712N
MINT:MINT-323400 STRING:Q9VUM0 PaxDb:Q9VUM0
EnsemblMetazoa:FBtr0075646 GeneID:39654 KEGG:dme:Dmel_CG7003
UCSC:CG7003-RA CTD:2956 FlyBase:FBgn0036486
GeneTree:ENSGT00550000075024 InParanoid:Q9VUM0 OrthoDB:EOG4PNVXR
PhylomeDB:Q9VUM0 GenomeRNAi:39654 NextBio:814711 Bgee:Q9VUM0
GermOnline:CG7003 Uniprot:Q9VUM0
Length = 1190
Score = 215 (80.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 62/209 (29%), Positives = 105/209 (50%)
Query: 340 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
P +++ E + ++TGPN GGK+ M+ +GL +M++ G ++PA + RL D I
Sbjct: 940 PNGLELGTASEAPLSLLTGPNMGGKSTLMREVGLLVIMAQIGAHIPAASC-RLSLVDRIF 998
Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
+G + STF ++ IL+ + SLVL+DE+G GT +G A+A S++ +
Sbjct: 999 TRLGAQDDILAGHSTFLVELNETSLILKHATCHSLVLLDELGRGTATYDGTAIAASVVNF 1058
Query: 460 LRDRVGLAVVTTHYADLSCLKDKDTRF---------ENAAT-EFSLETLRPTYRILWGST 509
L + + +THY +L D R EN + + ET+ Y+ G+
Sbjct: 1059 LANLKCRTLFSTHYHNLIDFFHNDKRITLGHMACMVENEDNADPTQETVTFLYKYTAGAC 1118
Query: 510 GDSNALNIAKSIGFDRKIIQRAQKLVERL 538
S N AK G + II+RA +L +++
Sbjct: 1119 PKSYGFNAAKLAGMPQGIIKRAYELSKKV 1147
>ASPGD|ASPL0000073909 [details] [associations]
symbol:AN10621 species:162425 "Emericella nidulans"
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000404 "loop DNA
binding" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0000406 "double-strand/single-strand DNA
junction binding" evidence=IEA] [GO:0032138 "single base insertion
or deletion binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IEA]
[GO:0006311 "meiotic gene conversion" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0000735 "removal of nonhomologous ends" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0036297
"interstrand cross-link repair" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006200 GO:GO:0016887 GO:GO:0030466 GO:GO:0006298
EMBL:BN001303 GO:GO:0000228 GO:GO:0000403 GO:GO:0006311
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0032301
GO:GO:0032138 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GO:GO:0000735 EnsemblFungi:CADANIAT00005387 Uniprot:C8V8L9
Length = 945
Score = 213 (80.0 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 45/134 (33%), Positives = 79/134 (58%)
Query: 350 ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLE 409
E+ ++ITGPN GGK+ ++ +G+ +LM++ G ++P L FD ILA +G S
Sbjct: 657 ESSFLIITGPNMGGKSTYIRMIGVIALMAQIGCFVPC-TEAELTIFDCILARVGASDSQL 715
Query: 410 QNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG-LAV 468
+ +STF + +IL+ + ESL++IDE+G GT +G LA +I +++ + +
Sbjct: 716 KGVSTFMAEMLETSNILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIVTEIRCFGL 775
Query: 469 VTTHYADLSCLKDK 482
TH+ +L+ L D+
Sbjct: 776 FATHFHELTTLADR 789
>UNIPROTKB|P20585 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein Msh3" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0016447 "somatic recombination of immunoglobulin gene segments"
evidence=IBA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0019899 "enzyme binding" evidence=IPI] [GO:0032302 "MutSbeta
complex" evidence=IDA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IMP] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=IMP]
[GO:0030983 "mismatched DNA binding" evidence=IDA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IDA]
[GO:0032142 "single guanine insertion binding" evidence=IDA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0032357 "oxidized purine DNA binding" evidence=IDA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0051096 "positive regulation of helicase
activity" evidence=IDA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0019237 EMBL:AC008434 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0045910 MIM:608089
GO:GO:0008094 UniGene:Hs.648635 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GO:GO:0051096 PDB:3THW PDB:3THX PDB:3THY PDB:3THZ PDBsum:3THW
PDBsum:3THX PDBsum:3THY PDBsum:3THZ HOGENOM:HOG000029776 KO:K08736
EMBL:J04810 EMBL:U61981 EMBL:D61419 EMBL:AY275681 EMBL:AC010270
EMBL:AC022493 EMBL:BC011817 EMBL:BC130436 IPI:IPI00329605
PIR:A33507 RefSeq:NP_002430.3 UniGene:Hs.280987
ProteinModelPortal:P20585 SMR:P20585 DIP:DIP-35127N IntAct:P20585
MINT:MINT-192778 STRING:P20585 PhosphoSite:P20585 DMDM:229462953
PaxDb:P20585 PRIDE:P20585 Ensembl:ENST00000265081 GeneID:4437
KEGG:hsa:4437 UCSC:uc003kgz.3 CTD:4437 GeneCards:GC05P079986
H-InvDB:HIX0032037 HGNC:HGNC:7326 HPA:HPA036080 HPA:HPA036081
MIM:600887 neXtProt:NX_P20585 PharmGKB:PA31134 HOVERGEN:HBG006400
InParanoid:P20585 OMA:HYFELTV OrthoDB:EOG434W57 GenomeRNAi:4437
NextBio:17293 ArrayExpress:P20585 Bgee:P20585 CleanEx:HS_MSH3
Genevestigator:P20585 GermOnline:ENSG00000113318 GO:GO:0016447
Uniprot:P20585
Length = 1137
Score = 220 (82.5 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 53/165 (32%), Positives = 94/165 (56%)
Query: 322 VENSEMTVGSLSKGISDFPVP--IDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSK 379
++N V + G D VP D+ + E RV++ITGPN GGK++ +K + L ++M++
Sbjct: 859 IKNGRHPVIDVLLGEQDQYVPNNTDLSEDSE-RVMIITGPNMGGKSSYIKQVALITIMAQ 917
Query: 380 AGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDE 439
G Y+PA+ + D I +G ++ + STF ++ +I+ + +SLV++DE
Sbjct: 918 IGSYVPAEE-ATIGIVDGIFTRMGAADNIYKGQSTFMEELTDTAEIIRKATSQSLVILDE 976
Query: 440 IGSGTDPSEGVALATSILQY-LRDRVGLAVVTTHYADLSCLKDKD 483
+G GT +G+A+A + L+Y +RD L + THY + C +K+
Sbjct: 977 LGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPV-CELEKN 1020
Score = 44 (20.5 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 15/85 (17%), Positives = 38/85 (44%)
Query: 97 SPLLELLKNCNF-LTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKK 155
SP+ LK N ++ +K D ++ + ++++ + E + +++ + +LK
Sbjct: 680 SPVEHYLKILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQGVIDEIRMHLQEIRKILKN 739
Query: 156 VAAQIFQAGGIDKPLITKRRSRMCV 180
+AQ G + + K + C+
Sbjct: 740 PSAQYVTVSGQEFMIEIKNSAVSCI 764
Score = 43 (20.2 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 12/53 (22%), Positives = 26/53 (49%)
Query: 479 LKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRA 531
+ + +++ + A E + + Y+I G S LN+AK +I+++A
Sbjct: 1034 VSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKA 1086
Score = 42 (19.8 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 138 IRAERKRNMENLDSLLKKVAAQIFQA-GGIDKPLITKRRSRMCVGIKASHKYL 189
I +KR +EN D +KK ++ Q GG D + + C+ + K L
Sbjct: 83 IDRRKKRPLEN-DGPVKKKVKKVQQKEGGSDLGMSGNSEPKKCLRTRNVSKSL 134
>POMBASE|SPCC285.16c [details] [associations]
symbol:msh6 "MutS protein homolog" species:4896
"Schizosaccharomyces pombe" [GO:0005524 "ATP binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=IMP]
[GO:0032137 "guanine/thymine mispair binding" evidence=ISO]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPCC285.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0006298 GO:GO:0043570
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
OMA:YHMDAVI InterPro:IPR017261 PIRSF:PIRSF037677 EMBL:AF207839
PIR:T41262 RefSeq:NP_588344.1 ProteinModelPortal:O74502
STRING:O74502 EnsemblFungi:SPCC285.16c.1 GeneID:2539215
KEGG:spo:SPCC285.16c HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
NextBio:20800385 Uniprot:O74502
Length = 1254
Score = 219 (82.2 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 59/204 (28%), Positives = 101/204 (49%)
Query: 341 VPIDIKVECET-RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
VP D+ + E+ ++V+TGPN GK+ ++ + +A +M++ G ++PAK P I
Sbjct: 1006 VPNDVVLGGESPNMIVLTGPNMAGKSTLLRQVCIAVIMAQLGCWVPAKRASITPMTS-IY 1064
Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
+G + + STF +S IL+ +SLV++DE+G GT +G A+A ++L +
Sbjct: 1065 TRLGANDDIMSARSTFMVELSETKKILDECGPKSLVILDELGRGTSTYDGHAIAYAVLHH 1124
Query: 460 LRDRVG-LAVVTTHYADLSC--LKDKDTRFENAATEFSLETLRPT--YRILWGSTGDSNA 514
L +G L +THY L + + R A + R T Y++ G S
Sbjct: 1125 LVSNIGCLGFFSTHYQSLCVDFMHHRQVRLMQMAAAVDEKIRRVTFLYKLEDGICPKSYG 1184
Query: 515 LNIAKSIGFDRKIIQRAQKLVERL 538
+N+A G K+I A++ L
Sbjct: 1185 MNVASMAGLPEKVIDAAEEKASEL 1208
Score = 45 (20.9 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 166 IDKPLITKRRSRMCVGIKAS 185
+DKP I RRSR V S
Sbjct: 186 VDKPFIASRRSRKPVSYAES 205
>MGI|MGI:1860077 [details] [associations]
symbol:Msh4 "mutS homolog 4 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0000794
"condensed nuclear chromosome" evidence=IDA] [GO:0000795
"synaptonemal complex" evidence=ISS;IDA] [GO:0001541 "ovarian
follicle development" evidence=IMP] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0007126 "meiosis" evidence=IDA;IMP] [GO:0007129 "synapsis"
evidence=IMP] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0007292 "female gamete generation" evidence=IMP] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0030983
"mismatched DNA binding" evidence=IBA] [GO:0045143 "homologous
chromosome segregation" evidence=IBA] [GO:0051026 "chiasma
assembly" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 MGI:MGI:1860077 GO:GO:0005524 GO:GO:0005654
GO:GO:0007283 GO:GO:0006298 Reactome:REACT_120463 GO:GO:0001541
GO:GO:0030983 GO:GO:0007292 GO:GO:0007131 Reactome:REACT_27235
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 GeneTree:ENSGT00550000074897 KO:K08740 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 CTD:4438
HOGENOM:HOG000290656 HOVERGEN:HBG036910 OrthoDB:EOG4DR9BS
EMBL:AF298655 EMBL:AF178957 IPI:IPI00118045 RefSeq:NP_114076.1
UniGene:Mm.272226 ProteinModelPortal:Q99MT2 SMR:Q99MT2
STRING:Q99MT2 PhosphoSite:Q99MT2 PRIDE:Q99MT2
Ensembl:ENSMUST00000005630 GeneID:55993 KEGG:mmu:55993
InParanoid:Q99MT2 ChiTaRS:MSH4 NextBio:311726 Bgee:Q99MT2
CleanEx:MM_MSH4 Genevestigator:Q99MT2 GermOnline:ENSMUSG00000005493
Uniprot:Q99MT2
Length = 958
Score = 215 (80.7 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 60/226 (26%), Positives = 110/226 (48%)
Query: 332 LSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPR 391
L K ++ PV + + + V++ITGPN GK+ +K + L +M++ G Y+PA+ +
Sbjct: 676 LEKISAEKPVANNTYITEGSNVLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAE-YAS 734
Query: 392 LPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVA 451
I I +E N STF + I IL + +SL+LIDE+G GT+ EG+
Sbjct: 735 FRIAAQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEEGIG 794
Query: 452 LATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF--------SLETLRPTYR 503
++ ++ ++L + TTH+ +L L EN E + + + TY+
Sbjct: 795 ISYAVCEHLLSIKAFTLFTTHFLELCHLDALYLNVENMHFEVQHVKNTSRNKDAILYTYK 854
Query: 504 ILWGSTGDSN-ALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKS 548
+ G T + N L A++ I+ A+ + ++ + Q+++S
Sbjct: 855 LSRGLTEEKNYGLKAAEASSLPSSIVLDARDITTQITRQILQNQRS 900
Score = 46 (21.3 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 75 VNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDR 130
VN K+T L +L+ PL LKNC+ L G D + +ILD+
Sbjct: 433 VNAAESKITNLIYLK-HTLELVEPLKVTLKNCS-TPLLRAYYGSLEDHRFGLILDK 486
Score = 40 (19.1 bits), Expect = 6.0e-13, Sum P(2) = 6.0e-13
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 82 LTEAAELDGDSLQRYSPLLELLKNCNFLT 110
++ A + G+S + ++ + E KN NF T
Sbjct: 233 MSNTACVVGNSTKLFTLITENFKNVNFTT 261
>MGI|MGI:1343961 [details] [associations]
symbol:Msh6 "mutS homolog 6 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IGI;IMP] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0003684 "damaged DNA binding" evidence=IGI;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006298
"mismatch repair" evidence=ISO;IGI;IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0008630 "intrinsic apoptotic signaling
pathway in response to DNA damage" evidence=IMP] [GO:0009411
"response to UV" evidence=IMP] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IMP]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=ISO;IDA] [GO:0043570 "maintenance of
DNA repeat elements" evidence=IBA] [GO:0045190 "isotype switching"
evidence=IMP] [GO:0045910 "negative regulation of DNA
recombination" evidence=ISO;IMP] [GO:0051096 "positive regulation
of helicase activity" evidence=ISO] [GO:0097193 "intrinsic
apoptotic signaling pathway" evidence=IMP] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 MGI:MGI:1343961 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0000287 GO:GO:0003684 GO:GO:0043531 GO:GO:0003682
GO:GO:0000790 GO:GO:0045190 GO:GO:0007131 InterPro:IPR000313
PROSITE:PS50812 GO:GO:0043570 GO:GO:0045910 SMART:SM00293
GO:GO:0008094 GO:GO:0016446 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 HOGENOM:HOG000243127
KO:K08737 OMA:YHMDAVI InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677 CTD:2956
GeneTree:ENSGT00550000075024 HOVERGEN:HBG000101 OrthoDB:EOG4CG07F
EMBL:U42190 EMBL:AF031087 EMBL:AF031085 EMBL:AF031086 EMBL:BC051160
EMBL:BC051634 EMBL:U61388 EMBL:U61389 IPI:IPI00323790
RefSeq:NP_034960.1 UniGene:Mm.18210 ProteinModelPortal:P54276
SMR:P54276 IntAct:P54276 STRING:P54276 PhosphoSite:P54276
PaxDb:P54276 PRIDE:P54276 Ensembl:ENSMUST00000005503 GeneID:17688
KEGG:mmu:17688 InParanoid:Q6GTK8 ChiTaRS:MSH6 NextBio:292264
Bgee:P54276 CleanEx:MM_MSH6 Genevestigator:P54276
GermOnline:ENSMUSG00000005370 Uniprot:P54276
Length = 1358
Score = 226 (84.6 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 68/248 (27%), Positives = 120/248 (48%)
Query: 338 DFPVPIDIKVECETRV--------VVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389
DF +P DI + CE V++TGPN GGK+ ++ GL ++M++ G Y+PA+
Sbjct: 1105 DF-IPNDILIGCEEEAEEHGKAYCVLVTGPNMGGKSTLIRQAGLLAVMAQLGCYVPAEKC 1163
Query: 390 PRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEG 449
RL D + +G + STF +S IL + SLVL+DE+G GT +G
Sbjct: 1164 -RLTPVDRVFTRLGASDRIMSGESTFFVELSETASILRHATAHSLVLVDELGRGTATFDG 1222
Query: 450 VALATSILQYLRDRVGLAVV-TTHY----ADLS---CLK--DKDTRFENAATEFSLETLR 499
A+A ++++ L + + + +THY D S C++ EN + S ET+
Sbjct: 1223 TAIANAVVKELAETIKCRTLFSTHYHSLVEDYSKSVCVRLGHMACMVENECEDPSQETIT 1282
Query: 500 PTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQS--LMEE 557
Y+ + G+ S N A+ ++IQ+ + + R + ++ +L++ L E
Sbjct: 1283 FLYKFIKGACPKSYGFNAARLANLPEEVIQKGHR---KAREFERMNQSLQLFREVCLATE 1339
Query: 558 RRKLESQA 565
+ + +A
Sbjct: 1340 KPTINGEA 1347
Score = 43 (20.2 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 73 RAVNNVWKKLTEA-AELDGDSLQRYSPLLELLKNCNFLTELEEKI-GFC-IDCKL-LIIL 128
R + + K T+ + LDGD + YS L LK T ++ G C +D L +
Sbjct: 510 REICRIITKGTQTYSVLDGDPSENYSRYLLSLKEKEEETSGHTRVYGVCFVDTSLGKFFI 569
Query: 129 DRASED 134
+ S+D
Sbjct: 570 GQFSDD 575
Score = 40 (19.1 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 212 AVEFNNMEVRLSNSEIAEETAILSLL-TAEIAKSEREIK 249
AV NN+E+ L+ + + E +L L T +R +K
Sbjct: 734 AVTLNNLEIFLNGTNGSTEGTLLERLDTCHTPFGKRLLK 772
Score = 40 (19.1 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 139 RAERKRNMENLDSLLKKVAAQIFQAGGIDKP 169
++E R M+ D L K A+ Q D+P
Sbjct: 169 KSEILRAMQRADEALSKDTAERLQLAVCDEP 199
Score = 38 (18.4 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 53 SAVSGQLLSPSEICAVRRTLRAVNNVWKKLTEAAEL 88
SA+S +L + ++ AV + V ++ KKL + L
Sbjct: 783 SAISDRLDAVEDLMAVPDKVTEVADLLKKLPDLERL 818
>ASPGD|ASPL0000041666 [details] [associations]
symbol:mshA species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:BN001307 EMBL:AACD01000026 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 PIRSF:PIRSF037677 HOGENOM:HOG000189303
OrthoDB:EOG4F4WK5 RefSeq:XP_659312.1 ProteinModelPortal:Q5BCM2
STRING:Q5BCM2 EnsemblFungi:CADANIAT00008351 GeneID:2874945
KEGG:ani:AN1708.2 Uniprot:Q5BCM2
Length = 1186
Score = 219 (82.2 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 69/245 (28%), Positives = 120/245 (48%)
Query: 322 VENSEMTVGSLSKGISDFPVPIDIKVECE-TRVVVITGPNTGGKTASMKTLGLASLMSKA 380
+E E+ L + DF +P DI++ + ++TG N GK+ ++ +A +M++
Sbjct: 906 LEFEELRHPCLISSVDDF-IPNDIQLGGSGPNIDLLTGANAAGKSTLLRMTCVAVIMAQV 964
Query: 381 GLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEI 440
G YLP ++ RL D I++ +G + ++ STF +S IL + SLV++DE+
Sbjct: 965 GCYLPCRS-ARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDEL 1023
Query: 441 GSGTDPSEGVALATSILQYLRDRVG-LAVVTTHYADLSCLKDKDTRFENAATEFSLET-- 497
G GT +GVA+A ++L ++ +G L THY L+ + + + ++
Sbjct: 1024 GRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLAAEFENHPEIKPKRMKIHVDENE 1083
Query: 498 LRPT--YRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLM 555
R T Y++ G S ++ A G K+I+RA+ +Q S L +SL
Sbjct: 1084 RRVTFLYKLEDGVAEGSFGMHCAAMCGIPNKVIERAEVAA------KQWEHTSRLTESL- 1136
Query: 556 EERRK 560
ERRK
Sbjct: 1137 -ERRK 1140
Score = 44 (20.5 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 35/170 (20%), Positives = 72/170 (42%)
Query: 5 VVQKAQIPFGKSLEES---QKLLN--QTSAALAMMQSQPLDLSTIEDIAGILNSAVS-GQ 58
++ + PFGK + + L++ + +A L + + D S + A L +
Sbjct: 615 LLNRCMTPFGKRMFKQWVCHPLVDPQRINARLDAVDALNADSSVRDQFASQLTKMPDLER 674
Query: 59 LLSPSEI--CAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEE-- 114
L+S C + +R + ++++ L DS + +L+K+ LTEL E
Sbjct: 675 LISRIHAANCRAQDFVRVLEG-FEQIEYTMSLLKDSGSGEGVIGQLIKSMPDLTELLEYW 733
Query: 115 KIGF----CIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQI 160
K F + +L+ ED + + ++ ++LD LLK+ ++
Sbjct: 734 KTAFDHNQAKESGILVPKPGVEEDFDSSQETIRQLHQDLDDLLKRTRREL 783
Score = 37 (18.1 bits), Expect = 8.1e-13, Sum P(2) = 8.1e-13
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 9 AQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLST 43
A P +S +Q + NQ S +S P ST
Sbjct: 12 AATPLKRSNSSTQNMKNQKSILGFFQKSSPSTPST 46
>UNIPROTKB|Q5BCM2 [details] [associations]
symbol:AN1708.2 "Protein required for mismatch repair in
mitosis and meiosis (Eurofung)" species:227321 "Aspergillus
nidulans FGSC A4" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:BN001307 EMBL:AACD01000026 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 PIRSF:PIRSF037677 HOGENOM:HOG000189303
OrthoDB:EOG4F4WK5 RefSeq:XP_659312.1 ProteinModelPortal:Q5BCM2
STRING:Q5BCM2 EnsemblFungi:CADANIAT00008351 GeneID:2874945
KEGG:ani:AN1708.2 Uniprot:Q5BCM2
Length = 1186
Score = 219 (82.2 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 69/245 (28%), Positives = 120/245 (48%)
Query: 322 VENSEMTVGSLSKGISDFPVPIDIKVECE-TRVVVITGPNTGGKTASMKTLGLASLMSKA 380
+E E+ L + DF +P DI++ + ++TG N GK+ ++ +A +M++
Sbjct: 906 LEFEELRHPCLISSVDDF-IPNDIQLGGSGPNIDLLTGANAAGKSTLLRMTCVAVIMAQV 964
Query: 381 GLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEI 440
G YLP ++ RL D I++ +G + ++ STF +S IL + SLV++DE+
Sbjct: 965 GCYLPCRS-ARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDEL 1023
Query: 441 GSGTDPSEGVALATSILQYLRDRVG-LAVVTTHYADLSCLKDKDTRFENAATEFSLET-- 497
G GT +GVA+A ++L ++ +G L THY L+ + + + ++
Sbjct: 1024 GRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLAAEFENHPEIKPKRMKIHVDENE 1083
Query: 498 LRPT--YRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLM 555
R T Y++ G S ++ A G K+I+RA+ +Q S L +SL
Sbjct: 1084 RRVTFLYKLEDGVAEGSFGMHCAAMCGIPNKVIERAEVAA------KQWEHTSRLTESL- 1136
Query: 556 EERRK 560
ERRK
Sbjct: 1137 -ERRK 1140
Score = 44 (20.5 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 35/170 (20%), Positives = 72/170 (42%)
Query: 5 VVQKAQIPFGKSLEES---QKLLN--QTSAALAMMQSQPLDLSTIEDIAGILNSAVS-GQ 58
++ + PFGK + + L++ + +A L + + D S + A L +
Sbjct: 615 LLNRCMTPFGKRMFKQWVCHPLVDPQRINARLDAVDALNADSSVRDQFASQLTKMPDLER 674
Query: 59 LLSPSEI--CAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEE-- 114
L+S C + +R + ++++ L DS + +L+K+ LTEL E
Sbjct: 675 LISRIHAANCRAQDFVRVLEG-FEQIEYTMSLLKDSGSGEGVIGQLIKSMPDLTELLEYW 733
Query: 115 KIGF----CIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQI 160
K F + +L+ ED + + ++ ++LD LLK+ ++
Sbjct: 734 KTAFDHNQAKESGILVPKPGVEEDFDSSQETIRQLHQDLDDLLKRTRREL 783
Score = 37 (18.1 bits), Expect = 8.1e-13, Sum P(2) = 8.1e-13
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 9 AQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLST 43
A P +S +Q + NQ S +S P ST
Sbjct: 12 AATPLKRSNSSTQNMKNQKSILGFFQKSSPSTPST 46
>WB|WBGene00001872 [details] [associations]
symbol:him-14 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] [GO:0045143 "homologous
chromosome segregation" evidence=IMP] [GO:0051026 "chiasma
assembly" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 Pfam:PF00488 Pfam:PF05188 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0051729 GO:GO:0006298 GO:GO:0030983
EMBL:FO081697 GO:GO:0000239 GO:GO:0008094 GO:GO:0051026
GO:GO:0000712 GO:GO:0045143 GO:GO:0000795 EMBL:AF178755 PIR:E88197
RefSeq:NP_495451.1 UniGene:Cel.22695 ProteinModelPortal:Q23405
SMR:Q23405 STRING:Q23405 PaxDb:Q23405 EnsemblMetazoa:ZK1127.11
GeneID:174157 KEGG:cel:CELE_ZK1127.11 UCSC:ZK1127.11 CTD:174157
WormBase:ZK1127.11 eggNOG:COG0249 GeneTree:ENSGT00550000074897
HOGENOM:HOG000015880 InParanoid:Q23405 KO:K08740 OMA:GFFIQMT
NextBio:882779 GermOnline:ZK1127.11 Gene3D:3.30.420.110
SUPFAM:SSF48334 Uniprot:Q23405
Length = 842
Score = 211 (79.3 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 55/215 (25%), Positives = 104/215 (48%)
Query: 350 ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLE 409
+ R +ITGPN GK+ +K ++M++ G ++PA N+ LP F+ I + +G + L
Sbjct: 580 DRRFGIITGPNMAGKSTYLKQTAQLAIMAQIGCFIPA-NYASLPIFNRIFSRMGHNDELI 638
Query: 410 QNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVV 469
+N S F+ +S I++ + SLV++DE+ T EG+A+ +I + + +
Sbjct: 639 RNKSAFASEMSDAAAIVQYADKNSLVVLDELARSTSTEEGIAITYAICEKVLKLQSYTFL 698
Query: 470 TTHYADLSCLKDKDTRFENAA-TEFSLETLRPTYRILWGS-TGDSNALNIAKSIGFDRKI 527
TH+ D++ L + +N + E +++L G G + + ++
Sbjct: 699 ATHFLDIAALANYSNAIDNYHFLPQTDENSTKKHKLLRGQYRGPLYGFELVELSTIPDEV 758
Query: 528 IQRAQKLVERLRPERQQHRKSELYQSLMEERRKLE 562
I+ AQ L LR + + Y S ERR+++
Sbjct: 759 IEHAQSLATELRANVEDTERD--YDS---ERRRIK 788
>UNIPROTKB|Q23405 [details] [associations]
symbol:him-14 "MutS protein homolog him-14" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IMP] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IMP]
[GO:0000239 "pachytene" evidence=IMP] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 Pfam:PF00488 Pfam:PF05188
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009792 GO:GO:0051729 GO:GO:0006298
GO:GO:0030983 EMBL:FO081697 GO:GO:0000239 GO:GO:0008094
GO:GO:0051026 GO:GO:0000712 GO:GO:0045143 GO:GO:0000795
EMBL:AF178755 PIR:E88197 RefSeq:NP_495451.1 UniGene:Cel.22695
ProteinModelPortal:Q23405 SMR:Q23405 STRING:Q23405 PaxDb:Q23405
EnsemblMetazoa:ZK1127.11 GeneID:174157 KEGG:cel:CELE_ZK1127.11
UCSC:ZK1127.11 CTD:174157 WormBase:ZK1127.11 eggNOG:COG0249
GeneTree:ENSGT00550000074897 HOGENOM:HOG000015880 InParanoid:Q23405
KO:K08740 OMA:GFFIQMT NextBio:882779 GermOnline:ZK1127.11
Gene3D:3.30.420.110 SUPFAM:SSF48334 Uniprot:Q23405
Length = 842
Score = 211 (79.3 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 55/215 (25%), Positives = 104/215 (48%)
Query: 350 ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLE 409
+ R +ITGPN GK+ +K ++M++ G ++PA N+ LP F+ I + +G + L
Sbjct: 580 DRRFGIITGPNMAGKSTYLKQTAQLAIMAQIGCFIPA-NYASLPIFNRIFSRMGHNDELI 638
Query: 410 QNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVV 469
+N S F+ +S I++ + SLV++DE+ T EG+A+ +I + + +
Sbjct: 639 RNKSAFASEMSDAAAIVQYADKNSLVVLDELARSTSTEEGIAITYAICEKVLKLQSYTFL 698
Query: 470 TTHYADLSCLKDKDTRFENAA-TEFSLETLRPTYRILWGS-TGDSNALNIAKSIGFDRKI 527
TH+ D++ L + +N + E +++L G G + + ++
Sbjct: 699 ATHFLDIAALANYSNAIDNYHFLPQTDENSTKKHKLLRGQYRGPLYGFELVELSTIPDEV 758
Query: 528 IQRAQKLVERLRPERQQHRKSELYQSLMEERRKLE 562
I+ AQ L LR + + Y S ERR+++
Sbjct: 759 IEHAQSLATELRANVEDTERD--YDS---ERRRIK 788
>CGD|CAL0006305 [details] [associations]
symbol:MSH6 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0000710 "meiotic mismatch repair" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032138 "single base
insertion or deletion binding" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0006305 GO:GO:0005524 GO:GO:0006298
EMBL:AACQ01000010 EMBL:AACQ01000009 GO:GO:0030983 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261
PIRSF:PIRSF037677 RefSeq:XP_722156.1 RefSeq:XP_722270.1
ProteinModelPortal:Q5AL33 STRING:Q5AL33 GeneID:3636059
GeneID:3636161 KEGG:cal:CaO19.12411 KEGG:cal:CaO19.4945
Uniprot:Q5AL33
Length = 1214
Score = 213 (80.0 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 59/199 (29%), Positives = 96/199 (48%)
Query: 341 VPIDIKVEC-ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
+P D+++ E ++TG N GK+ M+T LA ++S+ G Y+PA++ P D I+
Sbjct: 949 IPNDVQLGGDEPHFGLLTGANAAGKSTLMRTTALAIILSQIGCYIPAESAELTP-VDRIM 1007
Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
+G + ++ Q STF +S IL + SLV++DE+G G S+G A+A S+L +
Sbjct: 1008 TRLGANDNILQGKSTFFVELSETKKILSNATPRSLVILDELGRGGSSSDGFAIAESVLHH 1067
Query: 460 LRDRV-GLAVVTTHYADLSC-LKD----KDTRFENAATEFSLETLRPTYRILWGSTGDSN 513
L V L THY L K K R + + Y++ G+ S
Sbjct: 1068 LATHVQSLGFFATHYGTLGLSFKTHPQIKQLRM-GIVVDSGSRNITFLYKLETGTAPKSF 1126
Query: 514 ALNIAKSIGFDRKIIQRAQ 532
+N+A G I+ A+
Sbjct: 1127 GMNVASMCGIPDAIVDNAE 1145
>TIGR_CMR|CJE_1196 [details] [associations]
symbol:CJE_1196 "DNA mismatch repair protein"
species:195099 "Campylobacter jejuni RM1221" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006259 "DNA metabolic process"
evidence=ISS] InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 PIRSF:PIRSF005814 SMART:SM00533
SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0030983 PROSITE:PS50828 GO:GO:0045005 eggNOG:COG1193
KO:K07456 ProtClustDB:PRK00409 PANTHER:PTHR11361:SF14
RefSeq:YP_179186.1 ProteinModelPortal:Q5HU49 STRING:Q5HU49
GeneID:3231705 KEGG:cjr:CJE1196 PATRIC:20044188
HOGENOM:HOG000102093 OMA:KIEFVSG
BioCyc:CJEJ195099:GJC0-1223-MONOMER Uniprot:Q5HU49
Length = 735
Score = 209 (78.6 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 60/195 (30%), Positives = 103/195 (52%)
Query: 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAK-NHPRLPWFDLILA 400
P + +E + +V++ITG N GGK+ +K++ A+ ++K L + K + ++ F A
Sbjct: 295 PKSVSLEFKKQVLIITGVNAGGKSMLLKSMLSAAFLAKHLLPMHIKASESKIGTFKEFDA 354
Query: 401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVL-IDEIGSGTDPSEGVALATSILQY 459
I D Q+++ ++STF+G R++ L S+++L+L IDEI GTD E L + ++
Sbjct: 355 IIEDPQNVKNDISTFAG---RMLHFSRLFSKKNLLLGIDEIELGTDFEEAACLYSVLISK 411
Query: 460 LRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAK 519
L ++TTH+ L+ L K+ + E A + E RP Y L G+ G S A A
Sbjct: 412 LIANNLKIIITTHHKRLAMLLAKNEQVELIAALYDEELSRPKYEFLKGTIGKSYAFETAL 471
Query: 520 SIGFDRKIIQRAQKL 534
++ A+KL
Sbjct: 472 RYQIPPNLVGEAKKL 486
Score = 48 (22.0 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 541 ERQQHRKSELYQSLMEERRKLESQARTA 568
E+++ + E+ SL E++ K E + RT+
Sbjct: 516 EKKEQKVDEILLSLKEQKEKNEQEFRTS 543
>TAIR|locus:2131829 [details] [associations]
symbol:MSH3 "AT4G25540" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IBA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006200 "ATP catabolic process" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0030983 "mismatched
DNA binding" evidence=IDA] [GO:0007126 "meiosis" evidence=RCA]
[GO:0007129 "synapsis" evidence=RCA] [GO:0009410 "response to
xenobiotic stimulus" evidence=RCA] [GO:0048522 "positive regulation
of cellular process" evidence=RCA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003684 EMBL:AL022197 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000710
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032300 GO:GO:0000404
EMBL:AJ007791 IPI:IPI00524241 PIR:T05793 PIR:T51613
RefSeq:NP_194284.2 UniGene:At.506 ProteinModelPortal:O65607
SMR:O65607 STRING:O65607 PaxDb:O65607 PRIDE:O65607
EnsemblPlants:AT4G25540.1 GeneID:828659 KEGG:ath:AT4G25540
TAIR:At4g25540 HOGENOM:HOG000029776 InParanoid:O65607 KO:K08736
OMA:KRTKSIY PhylomeDB:O65607 ProtClustDB:CLSN2680081
Genevestigator:O65607 GermOnline:AT4G25540 Uniprot:O65607
Length = 1081
Score = 212 (79.7 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 71/267 (26%), Positives = 124/267 (46%)
Query: 336 ISDFPVPIDIKVECETRVV-VITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW 394
+ D VP D + E +ITGPN GGK+ ++ + L S+M++ G ++PA + +L
Sbjct: 794 LQDNFVPNDTILHAEGEYCQIITGPNMGGKSCYIRQVALISIMAQVGSFVPA-SFAKLHV 852
Query: 395 FDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALAT 454
D + +G S++ STF +S I+ S SLV++DE+G GT +GVA+A
Sbjct: 853 LDGVFTRMGASDSIQHGRSTFLEELSEASHIIRTCSSRSLVILDELGRGTSTHDGVAIAY 912
Query: 455 SILQYL-RDRVGLAVVTTHYADLSCLKDK-----DTRFENAAT------EFSLETLRPTY 502
+ LQ+L ++ L + THY +++ + + T + T + + + Y
Sbjct: 913 ATLQHLLAEKRCLVLFVTHYPEIAEISNGFPGSVGTYHVSYLTLQKDKGSYDHDDVTYLY 972
Query: 503 RILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPE-RQQHRKSELYQSL-MEERRK 560
+++ G S +A+ I+RA + +L E R + R + + + EE R
Sbjct: 973 KLVRGLCSRSFGFKVAQLAQIPPSCIRRAISMAAKLEAEVRARERNTRMGEPEGHEEPRG 1032
Query: 561 LESQARTAASLHAEI-MDLYREDSTSA 586
E L A++ L ED A
Sbjct: 1033 AEESISALGDLFADLKFALSEEDPWKA 1059
>DICTYBASE|DDB_G0275999 [details] [associations]
symbol:msh1 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISS;IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IRD] [GO:0007131 "reciprocal meiotic recombination"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0043504 "mitochondrial DNA repair"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0275999
GO:GO:0005739 GO:GO:0005524 GO:GO:0003684 GenomeReviews:CM000151_GR
EMBL:AAFI02000013 GO:GO:0006298 GO:GO:0008094 GO:GO:0043504
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
GO:GO:0032139 OMA:ITQTVRD RefSeq:XP_643371.1 STRING:Q552L1
EnsemblProtists:DDB0232360 GeneID:8620254 KEGG:ddi:DDB_G0275999
InParanoid:Q552L1 ProtClustDB:CLSZ2729174 Uniprot:Q552L1
Length = 898
Score = 210 (79.0 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 51/188 (27%), Positives = 101/188 (53%)
Query: 355 VITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLST 414
+ITGPN GGK+ ++ L LM++ G ++PA ++ ++ D I + +G L + ST
Sbjct: 697 LITGPNMGGKSTFLRQNALIILMAQMGSFVPA-SYAKIGIVDAIFSRVGSSDDLSNDKST 755
Query: 415 FSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLA--VVTTH 472
F + IL+ + S V++DE+G GT +G+++A S+++YL ++V + TH
Sbjct: 756 FMVEMVETASILKKATNRSFVIMDEVGRGTSTLDGISIAQSVVEYL-NQVNRCRTLFATH 814
Query: 473 YADLSCLKDKDTRFEN--AATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQR 530
Y +L+ D+ + A + + + T++I+ G + S + AK G +++R
Sbjct: 815 YHELTKNLDETPHIKCYCLAIQEDEDEILFTHKIVPGMSNKSYGIFCAKMAGIPNSVLER 874
Query: 531 AQKLVERL 538
++ ++ L
Sbjct: 875 SKSILFEL 882
Score = 48 (22.0 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 14/66 (21%), Positives = 33/66 (50%)
Query: 219 EVRLSNSEIAE-ETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPI 277
E+ + S++ E E + +L + K EIK + + +D++ + A ++ + PI
Sbjct: 577 EINRAASKVLEYEIQLYYVLVDLVCKYSNEIKQVSSVIANLDISTSLAKISKQRRYIKPI 636
Query: 278 LSSQSH 283
L + ++
Sbjct: 637 LVNNNN 642
>UNIPROTKB|Q74ZT2 [details] [associations]
symbol:AGOS_AGR116W "AGR116Wp" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:AE016820 GenomeReviews:AE016820_GR GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261 PIRSF:PIRSF037677
HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5 RefSeq:NP_986782.2
STRING:Q74ZT2 EnsemblFungi:AAS54606 GeneID:4623084
KEGG:ago:AGOS_AGR116W Uniprot:Q74ZT2
Length = 1167
Score = 211 (79.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 57/227 (25%), Positives = 114/227 (50%)
Query: 335 GISDFPVPIDIKVECET-RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP 393
G ++F +P D+ + T ++ ++TG N GK+ ++ +A +M++ G Y+P ++ P
Sbjct: 887 GATEF-IPNDVHLGKSTAQIALLTGANAAGKSTILRMTCIAVIMAQLGCYVPCEDAELSP 945
Query: 394 WFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALA 453
D I+ +G + ++ Q STF +S IL++ + +L+++DE+G G S+G A+A
Sbjct: 946 -MDRIMTRLGANDNIMQGKSTFFVELSETRKILDMATNRTLIVLDELGRGGSSSDGFAIA 1004
Query: 454 TSILQYLRDRV-GLAVVTTHYADL--SCLKDKDTRFENAATEFSLETLRPT--YRILWGS 508
+L ++ V L THY L S + A + + T Y+++ G
Sbjct: 1005 EGVLHHISTHVQSLGFFATHYGTLGQSFTHHPMVKPLQMAILVDEGSKKVTFLYKLIEGQ 1064
Query: 509 TGDSNALNIAKSIGFDRKIIQRAQKLVE------RLRPERQQHRKSE 549
+ S +++A G R +++ A++ E R+ ER+++ E
Sbjct: 1065 SEGSFGMHVAAMCGIPRSVVENAERAAESFEHTSRILKERKRYINDE 1111
>DICTYBASE|DDB_G0281683 [details] [associations]
symbol:msh3 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032302 "MutSbeta
complex" evidence=ISS;IBA] [GO:0032135 "DNA insertion or deletion
binding" evidence=ISS] [GO:0006312 "mitotic recombination"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0000735 "removal of nonhomologous ends" evidence=ISS]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0281683 GO:GO:0005524
GenomeReviews:CM000152_GR GO:GO:0003684 EMBL:AAFI02000042
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GO:GO:0000735 KO:K08736 RefSeq:XP_001134558.1
STRING:Q1ZXH0 EnsemblProtists:DDB0232960 GeneID:8623184
KEGG:ddi:DDB_G0281683 OMA:ATRISHI Uniprot:Q1ZXH0
Length = 1428
Score = 212 (79.7 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 70/262 (26%), Positives = 134/262 (51%)
Query: 322 VENSEM-TVGSLSKGISDFPVPIDIKV-ECETRVVVITGPNTGGKTASMKTLGLASLMSK 379
+EN V ++ G VP I++ E + ++ITGPN GGK++ ++ L +M++
Sbjct: 1141 IENGRHPVVEAILSGSDGSYVPNTIELRESACKSMIITGPNMGGKSSLLRQTALIVIMAQ 1200
Query: 380 AGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDE 439
G ++PA + L FD I +G S+ STF + DIL+ ++ +LV++DE
Sbjct: 1201 VGCFVPATSCS-LSVFDAIYTRMGARDSIGTGKSTFFIELEETSDILKNSTQNTLVILDE 1259
Query: 440 IGSGTDPSEGVALATSILQYLRDRVGL-AVVTTHYADLSCLK-DKDTRFENAATEFSLE- 496
+G GT ++GVA+A S L+Y+ + + + THY L+ L+ T+ N + E
Sbjct: 1260 LGRGTSTNDGVAIAYSTLKYIVEVMKCYCLFVTHYPLLAQLELQYPTQVGNFHMGYLEEK 1319
Query: 497 -------TLRPT----YRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQH 545
++ P Y+++ G+ +S LNIA+ G ++I A K ++
Sbjct: 1320 QDQQLQKSVIPKVIFLYKLVKGAAQNSYGLNIARLAGLPMEVIADALKKSNEMKESIT-- 1377
Query: 546 RKSELYQSLMEERRKLESQART 567
R++ L ++++++E++ ++
Sbjct: 1378 RRANLSDG--KDQQQIENEIKS 1397
>UNIPROTKB|E1C1F8 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032357 "oxidized purine DNA binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045910
"negative regulation of DNA recombination" evidence=IEA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074949 EMBL:AADN02047884 EMBL:AADN02047885
EMBL:AADN02047886 EMBL:AADN02047887 EMBL:AADN02047888
EMBL:AADN02047889 IPI:IPI00586936 Ensembl:ENSGALT00000025135
OMA:LLLDCQR Uniprot:E1C1F8
Length = 598
Score = 200 (75.5 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 67/254 (26%), Positives = 124/254 (48%)
Query: 322 VENSEMTVGSLSKGISDFPVPIDIKVECE-TRVVVITGPNTGGKTASMKTLGLASLMSKA 380
++N V + G D VP + + RV++ITGPN GGK++ +K + L ++M++
Sbjct: 319 IKNGRHPVIDVLLGEQDQYVPNTTNLSRDGERVMIITGPNMGGKSSYIKQVALITVMAQI 378
Query: 381 GLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEI 440
G Y+PA+ + D I +G ++ + STF ++ +I+ + SLV++DE+
Sbjct: 379 GSYVPAEEST-VGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRRATSRSLVILDEL 437
Query: 441 GSGTDPSEGVALATSILQ-YLRDRVGLAVVTTHYADLSCLKDK-DTRFENAATEFSLETL 498
G GT +G+A+A + L+ ++ D L + THY + L++ + N F +
Sbjct: 438 GRGTSTHDGIAIAYATLEHFITDVESLTLFVTHYPSVCELENVYPGKVGNYHMAFLVNKE 497
Query: 499 RPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKL-VERLR--PE----RQQHRKSELY 551
+ GS + N + + + R+ L V +L PE + H+ EL
Sbjct: 498 ESAEQK--GSEEEENPEFVTFLYQITKGVTARSYGLNVAKLADIPEEILKKAAHKSKELE 555
Query: 552 QSLMEERRKLESQA 565
+ + +R+KL+S A
Sbjct: 556 RLVNVKRKKLKSFA 569
Score = 53 (23.7 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 39 LDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSP 98
LD S I+ + +++S V LL + + + L V + K L E A GD Q +
Sbjct: 107 LD-SEIQALVPVIHSHVKSPLLQ-NALLEIPELLSPVKHYLKILNEEAAKTGDKTQLFKD 164
Query: 99 LLE 101
L +
Sbjct: 165 LTD 167
>UNIPROTKB|Q7NLT8 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:251221 "Gloeobacter violaceus PCC 7421" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:BA000045 GenomeReviews:BA000045_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:NP_923979.1 ProteinModelPortal:Q7NLT8
GeneID:2599151 KEGG:gvi:gvip140 PATRIC:22041477
BioCyc:GVIO251221:GH9A-1085-MONOMER Uniprot:Q7NLT8
Length = 890
Score = 212 (79.7 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 55/210 (26%), Positives = 104/210 (49%)
Query: 339 FPVPIDIKV--ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFD 396
F VP D ++ E E ++++TGPN GK++ ++ + L L+++ G ++PA+ L D
Sbjct: 664 FFVPNDARMGAEAEPDLIILTGPNMSGKSSFIRQVALIQLLAQVGAFVPARGAV-LGVAD 722
Query: 397 LILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSI 456
I +G L STF ++ +IL + SLVL+DEIG GT +G+A+A ++
Sbjct: 723 RIFTRVGAVDDLATGQSTFMVEMTETANILNHATPRSLVLLDEIGRGTATFDGLAIAWAV 782
Query: 457 LQYLRDRVGLAVV-TTHYADLSCLKDKDTRFEN--AATEFSLETLRPTYRILWGSTGDSN 513
+YL + + THY +L+ L + N + + + +R+ G S
Sbjct: 783 AEYLASHIRCRTIFATHYHELNELASVVSGVANYQVTVQELADRIVFLHRVTPGGADRSY 842
Query: 514 ALNIAKSIGFDRKIIQRAQKLVERLRPERQ 543
+ + + G ++ RA+ ++ ++ Q
Sbjct: 843 GIEVGRLAGLPPSVVARARTVLAQVEQHSQ 872
Score = 45 (20.9 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 214 EFNNMEVRLSNSEIAE---ETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQW 270
E E R+ N++ E I ++L E + ++ + RV +D A A +
Sbjct: 573 ELKERETRILNAQQQTNQLEYDIFNILRQEAGRHVSALRQVARRVAALDALAGLAEVAVY 632
Query: 271 MDGVCPILSSQSHVSFDS 288
D P+L V ++
Sbjct: 633 HDYCRPVLGEGREVHIEA 650
>UNIPROTKB|O15457 [details] [associations]
symbol:MSH4 "MutS protein homolog 4" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0001541
"ovarian follicle development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007292 "female gamete
generation" evidence=IEA] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0000795 "synaptonemal complex" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IRD] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0030983
"mismatched DNA binding" evidence=IBA] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0045143 "homologous chromosome
segregation" evidence=IBA] [GO:0051026 "chiasma assembly"
evidence=IBA] [GO:0003677 "DNA binding" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:CH471059 GO:GO:0007283
GO:GO:0006298 EMBL:AL357314 Reactome:REACT_111183 GO:GO:0001541
GO:GO:0030983 EMBL:AL445464 GO:GO:0007292 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 KO:K08740 OMA:GFFIQMT Gene3D:3.30.420.110
SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:U89293 EMBL:AF104243
EMBL:AY268350 EMBL:BC033030 IPI:IPI00289914 RefSeq:NP_002431.2
UniGene:Hs.216639 ProteinModelPortal:O15457 SMR:O15457
IntAct:O15457 STRING:O15457 PhosphoSite:O15457 PRIDE:O15457
DNASU:4438 Ensembl:ENST00000263187 GeneID:4438 KEGG:hsa:4438
UCSC:uc001dhd.2 CTD:4438 GeneCards:GC01P076262 HGNC:HGNC:7327
HPA:HPA028117 MIM:602105 neXtProt:NX_O15457 PharmGKB:PA31135
HOGENOM:HOG000290656 HOVERGEN:HBG036910 InParanoid:O15457
OrthoDB:EOG4DR9BS PhylomeDB:O15457 GenomeRNAi:4438 NextBio:17297
ArrayExpress:O15457 Bgee:O15457 CleanEx:HS_MSH4
Genevestigator:O15457 GermOnline:ENSG00000057468 Uniprot:O15457
Length = 936
Score = 211 (79.3 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 61/227 (26%), Positives = 110/227 (48%)
Query: 332 LSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPR 391
L K ++ P+ + V + ++ITGPN GK+ +K + L +M++ G Y+PA+ +
Sbjct: 654 LEKISAEKPIANNTYVTEGSNFLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAE-YSS 712
Query: 392 LPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVA 451
I I +E N STF + I IL + +SL+LIDE+G GT+ EG+
Sbjct: 713 FRIAKQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEEGIG 772
Query: 452 LATSILQYLRDRVGLAVVTTHYADLSCLKD------KDTRFENAA---TEFSLETLRPTY 502
+ ++ +YL + TH+ +L C D ++ FE T + E + TY
Sbjct: 773 ICYAVCEYLLSLKAFTLFATHFLEL-CHIDALYPNVENMHFEVQHVKNTSRNKEAILYTY 831
Query: 503 RILWGSTGDSN-ALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKS 548
++ G T + N L A+ I+ A+++ ++ + Q+++S
Sbjct: 832 KLSKGLTEEKNYGLKAAEVSSLPPSIVLDAKEITTQITRQILQNQRS 878
Score = 46 (21.3 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 75 VNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDR 130
VN K+T L +L+ PL +KNCN L G D + IIL++
Sbjct: 411 VNAAESKITNLIYLK-HTLELVDPLKIAMKNCN-TPLLRAYYGSLEDKRFGIILEK 464
Score = 39 (18.8 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 90 GDSLQRYSPLLELLKNCNFLT 110
G+S + ++ + E KN NF T
Sbjct: 219 GNSTKLFTLITENFKNVNFTT 239
Score = 39 (18.8 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 17/64 (26%), Positives = 26/64 (40%)
Query: 228 AEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFA---RAGFAQWMDGVCPILSSQSHV 284
AE T + + S R+ Y + L+ L+ R+G+ W V SS S +
Sbjct: 92 AENTVASNFTFGASSSSARDTNY--PQTLKTPLSTGNPQRSGYKSWTPQVGYSASSSSAI 149
Query: 285 SFDS 288
S S
Sbjct: 150 SAHS 153
>UNIPROTKB|F1LQM8 [details] [associations]
symbol:Msh3 "Protein Msh3" species:10116 "Rattus
norvegicus" [GO:0003697 "single-stranded DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032357 "oxidized purine DNA binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045910
"negative regulation of DNA recombination" evidence=IEA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 RGD:1563954 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08736 CTD:4437
GeneTree:ENSGT00550000074949 IPI:IPI00196502 RefSeq:NP_001178886.1
UniGene:Rn.162551 Ensembl:ENSRNOT00000018449 GeneID:499505
KEGG:rno:499505 NextBio:703076 ArrayExpress:F1LQM8 Uniprot:F1LQM8
Length = 1105
Score = 208 (78.3 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 50/163 (30%), Positives = 91/163 (55%)
Query: 322 VENSEMTVGSLSKGISDFPVPIDIKVECET-RVVVITGPNTGGKTASMKTLGLASLMSKA 380
++N + + G D VP + ++ RV++ITGPN GGK++ +K + L +M++
Sbjct: 817 IKNGRHPMIDVLLGEQDQFVPNSTNLSQDSERVMIITGPNMGGKSSYIKQVALVVIMAQI 876
Query: 381 GLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEI 440
G Y+PA+ + D I G ++ + STF ++ +I++ ++ SLV++DE+
Sbjct: 877 GSYVPAEE-ATIGIVDGIFTRRGAADNIYKGRSTFMEELTDTAEIIQKATQRSLVILDEL 935
Query: 441 GSGTDPSEGVALATSILQY-LRDRVGLAVVTTHYADLSCLKDK 482
G GT +G+A+A + L+Y +RD L + THY + C +K
Sbjct: 936 GRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPV-CELEK 977
Score = 51 (23.0 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 502 YRILWGSTGDSNALNIAKSIGFDRKIIQRA 531
Y+I G S LN+AK R+I+Q+A
Sbjct: 1015 YQITRGIAARSYGLNVAKLADVPREILQKA 1044
>UNIPROTKB|F1MLH1 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0019237 "centromeric
DNA binding" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0019237 GO:GO:0003697 GO:GO:0043570
GO:GO:0045910 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032302
GO:GO:0032181 GO:GO:0032357 GO:GO:0032142 GO:GO:0051096 OMA:KRTKSIY
GO:GO:0016447 GeneTree:ENSGT00550000074949 EMBL:DAAA02021015
EMBL:DAAA02021016 EMBL:DAAA02021017 EMBL:DAAA02021018
IPI:IPI00867495 Ensembl:ENSBTAT00000010107 Uniprot:F1MLH1
Length = 1120
Score = 211 (79.3 bits), Expect = 4.6e-13, Sum P(3) = 4.6e-13
Identities = 52/164 (31%), Positives = 93/164 (56%)
Query: 322 VENSEMTVGSLSKGISDFPVP--IDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSK 379
++N V + G D VP D+ + E RV++ITGPN GGK++ +K + L ++M++
Sbjct: 847 IKNGRHPVIDVLLGEQDQFVPNSTDLSGDSE-RVMIITGPNMGGKSSYIKQVALITVMAQ 905
Query: 380 AGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDE 439
G Y+PA+ + D I +G ++ + STF ++ +I+ + +SLV++DE
Sbjct: 906 IGSYVPAEE-ATIGIVDGIFTRMGAADNIYKGQSTFMEELTDTAEIIRKATPQSLVILDE 964
Query: 440 IGSGTDPSEGVALATSILQ-YLRDRVGLAVVTTHYADLSCLKDK 482
+G GT +G+A+A + L+ ++RD L + THY + C +K
Sbjct: 965 LGRGTSTHDGIAIAYATLEHFIRDVKSLTLFVTHYPPV-CELEK 1007
Score = 49 (22.3 bits), Expect = 4.6e-13, Sum P(3) = 4.6e-13
Identities = 29/175 (16%), Positives = 76/175 (43%)
Query: 17 LEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVN 76
L+ ++L+ S+ +++ L IE G+ + + + S E + +TL +
Sbjct: 582 LDAVSEVLHSESSVFGQIENHLRKLPDIE--RGLCS--IYHKKCSTQEFFLIVKTLYHLK 637
Query: 77 NVWKKLTEA--AELDGDSLQRY--------SPLLELLKNCNF-LTELEEKIGFCIDCKLL 125
+ ++ L A + ++ + LQ + SP+ LK N ++ +K D
Sbjct: 638 SEFQALIPAVNSHVESELLQTFILEIPGLLSPVEHYLKILNEQAAKIGDKTELFKDLSDF 697
Query: 126 IILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCV 180
++ + ++++ + + + +++ + +LK +AQ G + + K + C+
Sbjct: 698 PLIKKRKDEIQDVTKKIQTHLQEIRKILKNPSAQYVTVSGQEFMIEVKNSAVSCI 752
Score = 42 (19.8 bits), Expect = 4.6e-13, Sum P(3) = 4.6e-13
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 479 LKDKDTRFENAATEFSL-ETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVER 537
L ++D ++A E + +++ Y+I G S LN+AK +I+++A +
Sbjct: 1021 LVNEDESKQDAGEEDQVPDSVIFLYQITRGIAARSYGLNVAKLADVPGEILKKAASKSKE 1080
Query: 538 LRPERQQHRK 547
L RK
Sbjct: 1081 LEGLVNMKRK 1090
>UNIPROTKB|F1P4E2 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006298 "mismatch repair" evidence=IEA] [GO:0030983
"mismatched DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000795 "synaptonemal complex" evidence=IEA]
[GO:0001541 "ovarian follicle development" evidence=IEA]
[GO:0007129 "synapsis" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0007292 "female gamete generation" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007129
GO:GO:0000795 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150
EMBL:AADN02012381 IPI:IPI00596754 Ensembl:ENSGALT00000018582
Uniprot:F1P4E2
Length = 846
Score = 207 (77.9 bits), Expect = 4.6e-13, P = 4.6e-13
Identities = 70/265 (26%), Positives = 124/265 (46%)
Query: 332 LSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPR 391
L K + PV + + + ++ITGPN GK+ +K + L +M++ G Y+PA+ +
Sbjct: 567 LEKIAMEKPVSNNAYLTEGSNFLIITGPNMSGKSTYIKQIALCQIMAQIGSYVPAE-YCS 625
Query: 392 LPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVA 451
+ I IG +E N STF + I I++ + +SL++IDE+G GT EG+
Sbjct: 626 FRIAEQIFTRIGMDDDIETNASTFMKEMKEITYIIQNANDKSLIIIDELGRGTSAEEGIG 685
Query: 452 LATSILQYLRDRVGLAVVTTHYADLSCLKD------KDTRFE--NAATEFSLETLRPTYR 503
+ + +YL + + TH+ +L C D ++ FE + + E + TY
Sbjct: 686 ICYAACEYLLNLKAFTLFATHFLEL-CHMDALYPNVENYHFEVQHVRSSAGKEKITYTYT 744
Query: 504 ILWGSTGDSN-ALNIAK------SIGFDRKIIQR--AQKLVERLRPERQQHRKSELYQSL 554
+ G T + N L A+ SI D K I A++++ R R + + +Y
Sbjct: 745 LSKGYTEEKNYGLKAAEVSSLPPSIILDAKAITNHIAKQILHRQRTTPEMMKHRAVYHLA 804
Query: 555 MEERRKLESQARTAASLHAEIMDLY 579
M +L AR + L ++ + +Y
Sbjct: 805 M----RLVQTARNSR-LDSDSLQIY 824
>UNIPROTKB|Q23K54 [details] [associations]
symbol:TTHERM_00194810 "MutS domain III family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
EMBL:GG662673 ProtClustDB:CLSZ2445539 RefSeq:XP_001017234.1
UniGene:Tth.3690 ProteinModelPortal:Q23K54 EnsemblProtists:EAR96989
GeneID:7830572 KEGG:tet:TTHERM_00194810 Uniprot:Q23K54
Length = 1232
Score = 209 (78.6 bits), Expect = 4.7e-13, P = 4.7e-13
Identities = 65/220 (29%), Positives = 110/220 (50%)
Query: 333 SKGISDFPVPI---DIK----VECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLP 385
S G++ P I DIK E ++++TGPN GGK+ +++ + +++++ G Y+P
Sbjct: 971 SMGVNFIPNDIYLGDIKQTGQFEDNKNLILLTGPNMGGKSTTLRMACVMAILAQIGCYVP 1030
Query: 386 AKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTD 445
AK+ R+ D I IG L STF + + ++ S+ SL+++DE+G GT
Sbjct: 1031 AKSL-RMTLVDRIFTRIGASDKLMDGKSTFFIEMEETSNAVKQGSKHSLIIMDELGRGTS 1089
Query: 446 PSEGVALATSILQYLRDRV-GLAVVTTHYADLSCLKDKDTRFENAA---TEFSLETLRPT 501
+GVA+A SI++YL + + + THY L D+ + A ++ R
Sbjct: 1090 TFDGVAIAYSIVRYLVENLQSRCLFATHY---HVLLDEFRHYPQIAYYHMACHVDEKRSK 1146
Query: 502 ----YRILWGSTGDSNALNIAKSIGFDRKIIQRA-QKLVE 536
YR+ G S +N+AK +G +I+ A QK E
Sbjct: 1147 VIFLYRLKAGECSSSFGINVAKVVGISDNLIEIAKQKAKE 1186
>UNIPROTKB|I3L5Z8 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
GeneTree:ENSGT00550000074897 Gene3D:3.30.420.110 SUPFAM:SSF48334
SUPFAM:SSF53150 EMBL:CU929611 EMBL:FP312934
Ensembl:ENSSSCT00000023892 Uniprot:I3L5Z8
Length = 902
Score = 215 (80.7 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 58/218 (26%), Positives = 105/218 (48%)
Query: 340 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
PV + + + V+ITGPN GK+ +K + L +M++ G Y+PA+ + + I
Sbjct: 628 PVANNTYITEGSNFVIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAE-YSSFRIAEQIF 686
Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
I +E N STF + I IL + +SL+LIDE+G GT+ EG+ + ++ +Y
Sbjct: 687 TRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEEGIGICYAVCEY 746
Query: 460 LRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF--------SLETLRPTYRILWGSTGD 511
L + TH+ +L + EN E + E + TY++ G T +
Sbjct: 747 LLSLKAFTLFATHFLELCHIDVLYPNVENMYFEVQHVKNTSRNKEAILYTYKLSKGLTEE 806
Query: 512 SN-ALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKS 548
N L A++ I+ A+++ ++ + Q+++S
Sbjct: 807 KNYGLKAAEASSLPPSIVLDAKEITTQITRQILQNQRS 844
Score = 40 (19.1 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 82 LTEAAELDGDSLQRYSPLLELLKNCNFLT 110
++ A + G+S + ++ + E KN NF T
Sbjct: 171 MSNTACVVGNSTKLFTLITENFKNVNFTT 199
>UNIPROTKB|F1S9R2 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007129 "synapsis"
evidence=IEA] [GO:0001541 "ovarian follicle development"
evidence=IEA] [GO:0000795 "synaptonemal complex" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0007283 GO:GO:0006298
GO:GO:0001541 GO:GO:0030983 GO:GO:0007292 GO:GO:0007129
GO:GO:0000795 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:CU929611
EMBL:FP312934 Ensembl:ENSSSCT00000004176 Uniprot:F1S9R2
Length = 934
Score = 215 (80.7 bits), Expect = 5.6e-13, Sum P(2) = 5.6e-13
Identities = 58/218 (26%), Positives = 105/218 (48%)
Query: 340 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
PV + + + V+ITGPN GK+ +K + L +M++ G Y+PA+ + + I
Sbjct: 660 PVANNTYITEGSNFVIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAE-YSSFRIAEQIF 718
Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
I +E N STF + I IL + +SL+LIDE+G GT+ EG+ + ++ +Y
Sbjct: 719 TRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEEGIGICYAVCEY 778
Query: 460 LRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF--------SLETLRPTYRILWGSTGD 511
L + TH+ +L + EN E + E + TY++ G T +
Sbjct: 779 LLSLKAFTLFATHFLELCHIDVLYPNVENMYFEVQHVKNTSRNKEAILYTYKLSKGLTEE 838
Query: 512 SN-ALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKS 548
N L A++ I+ A+++ ++ + Q+++S
Sbjct: 839 KNYGLKAAEASSLPPSIVLDAKEITTQITRQILQNQRS 876
Score = 40 (19.1 bits), Expect = 5.6e-13, Sum P(2) = 5.6e-13
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 82 LTEAAELDGDSLQRYSPLLELLKNCNFLT 110
++ A + G+S + ++ + E KN NF T
Sbjct: 209 MSNTACVVGNSTKLFTLITENFKNVNFTT 237
>UNIPROTKB|F1P6X2 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 GeneTree:ENSGT00550000074897 Gene3D:3.30.420.110
SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:AAEX03004895 EMBL:AAEX03004896
Ensembl:ENSCAFT00000032471 Uniprot:F1P6X2
Length = 798
Score = 213 (80.0 bits), Expect = 5.9e-13, Sum P(2) = 5.9e-13
Identities = 55/204 (26%), Positives = 99/204 (48%)
Query: 354 VVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLS 413
++ITGPN GK+ +K + L +M++ G Y+PA+ + + I I +E N S
Sbjct: 538 LIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAE-YSSFRIAEQIFTRISTDDDIETNSS 596
Query: 414 TFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473
TF + I IL + +SL+LIDE+G GT EG+ + ++ +YL + TH+
Sbjct: 597 TFMKEMKEIAYILHNANNKSLILIDELGRGTSTEEGIGICYAVCEYLLSLKAFTLFATHF 656
Query: 474 ADLSCLKDKDTRFENAATEF--------SLETLRPTYRILWGSTGDSN-ALNIAKSIGFD 524
+L ++ EN E + E + TY++ G T + N L A+
Sbjct: 657 LELCHIEALYPNVENMHFEVQHVKDTSRNKEAILYTYKLCKGLTEEKNYGLKAAEVSSLP 716
Query: 525 RKIIQRAQKLVERLRPERQQHRKS 548
I+ A+++ ++ + Q+++S
Sbjct: 717 PSIVLDAKEITAQITRQILQNQRS 740
Score = 40 (19.1 bits), Expect = 5.9e-13, Sum P(2) = 5.9e-13
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 82 LTEAAELDGDSLQRYSPLLELLKNCNFLT 110
++ A + G+S + ++ + E KN NF T
Sbjct: 73 MSNTACVVGNSTKLFTLITENFKNVNFTT 101
>TAIR|locus:2132233 [details] [associations]
symbol:MSH6 "AT4G02070" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006200 "ATP catabolic process"
evidence=IBA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006290 "pyrimidine dimer repair" evidence=IMP] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0048451 "petal formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 InterPro:IPR002999
GO:GO:0005524 GO:GO:0009411 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003684 EMBL:AL161493 SMART:SM00333 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0045910 GO:GO:0008094
GO:GO:0006290 EMBL:AF001308 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
EMBL:AF001535 EMBL:AJ245967 IPI:IPI00528681 PIR:T01508
RefSeq:NP_192116.1 UniGene:At.34340 ProteinModelPortal:O04716
SMR:O04716 STRING:O04716 PaxDb:O04716 PRIDE:O04716
EnsemblPlants:AT4G02070.1 GeneID:828147 KEGG:ath:AT4G02070
TAIR:At4g02070 HOGENOM:HOG000243127 InParanoid:O04716 KO:K08737
OMA:YHMDAVI PhylomeDB:O04716 ProtClustDB:CLSN2685718
ArrayExpress:O04716 Genevestigator:O04716 GermOnline:AT4G02070
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 Uniprot:O04716
Length = 1324
Score = 205 (77.2 bits), Expect = 7.8e-13, Sum P(2) = 7.8e-13
Identities = 65/228 (28%), Positives = 114/228 (50%)
Query: 333 SKGISDFPVPIDIKVECETRV--VVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP 390
S G F VP ++K+ + +++TGPN GGK+ ++ + LA ++++ G +PA+
Sbjct: 1057 SLGRGSF-VPNNVKIGGAEKASFILLTGPNMGGKSTLLRQVCLAVILAQIGADVPAETFE 1115
Query: 391 RLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGV 450
P D I +G + STF +S +L +R SLV++DE+G GT S+G
Sbjct: 1116 VSP-VDKICVRMGAKDHIMAGQSTFLTELSETAVMLTSATRNSLVVLDELGRGTATSDGQ 1174
Query: 451 ALATSILQYLRDRVGL-AVVTTHYADLSCLKDKDTRFE--NAATEFS-----LETLRPTY 502
A+A S+L++ ++V +THY LS + + + A + +E + Y
Sbjct: 1175 AIAESVLEHFIEKVQCRGFFSTHYHRLSVDYQTNPKVSLCHMACQIGEGIGGVEEVTFLY 1234
Query: 503 RILWGSTGDSNALNIAKSIGFDRKIIQRAQ-KLVERLRPERQQHRKSE 549
R+ G+ S +N+A+ G ++QRA K E + HRK++
Sbjct: 1235 RLTPGACPKSYGVNVARLAGLPDYVLQRAVIKSQEFEALYGKNHRKTD 1282
Score = 53 (23.7 bits), Expect = 7.8e-13, Sum P(2) = 7.8e-13
Identities = 29/134 (21%), Positives = 54/134 (40%)
Query: 6 VQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEI 65
V++ + K L+E +KLL S + L E ++G S L S+
Sbjct: 898 VEEFESSLKKHLKEQRKLLGDASINYVTVGKDEYLLEVPESLSG---SVPHDYELCSSKK 954
Query: 66 CAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLL 125
R + + K+L++A +L+ S L + + C + + + + +L
Sbjct: 955 GVSRYWTPTIKKLLKELSQAKSEKESALKSISQRL-IGRFCEHQEKWRQLVSATAELDVL 1013
Query: 126 IILDRASEDLELIR 139
I L AS+ E +R
Sbjct: 1014 ISLAFASDSYEGVR 1027
Score = 42 (19.8 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 188 YLLPDGIAL-NVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSER 246
+LL G +L N+SSS YF + VE +N R+ E A+E + T E +S
Sbjct: 848 HLLTPGQSLPNISSS-IKYFKDAFDWVEAHNSG-RVIPHEGADEEYDCACKTVEEFESSL 905
Query: 247 EIKYLMDR 254
+ K+L ++
Sbjct: 906 K-KHLKEQ 912
>RGD|1309190 [details] [associations]
symbol:Msh4 "mutS homolog 4 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000793 "condensed chromosome" evidence=ISO] [GO:0000794
"condensed nuclear chromosome" evidence=ISO] [GO:0000795
"synaptonemal complex" evidence=ISO;IBA] [GO:0001541 "ovarian
follicle development" evidence=IEA;ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0007126 "meiosis" evidence=ISO] [GO:0007129
"synapsis" evidence=ISO] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0007283 "spermatogenesis"
evidence=IEA;ISO] [GO:0007292 "female gamete generation"
evidence=IEA;ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008150 "biological_process" evidence=ND]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IRD] [GO:0045143 "homologous
chromosome segregation" evidence=IBA] [GO:0051026 "chiasma
assembly" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 RGD:1309190 GO:GO:0005524 GO:GO:0007283 GO:GO:0006298
GO:GO:0001541 GO:GO:0030983 GO:GO:0007292 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
GeneTree:ENSGT00550000074897 Gene3D:3.30.420.110 SUPFAM:SSF48334
SUPFAM:SSF53150 IPI:IPI00870836 Ensembl:ENSRNOT00000014106
Uniprot:F1M9U4
Length = 958
Score = 212 (79.7 bits), Expect = 8.0e-13, Sum P(2) = 8.0e-13
Identities = 60/227 (26%), Positives = 113/227 (49%)
Query: 332 LSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPR 391
L K ++ PV + + + V++ITGPN GK+ +K + L +M++ G ++PA+ +
Sbjct: 676 LEKISAEKPVANNTYITEGSNVLIITGPNMSGKSTFLKQIALCQIMAQIGSFVPAQ-YAS 734
Query: 392 LPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVA 451
I I +E N STF + I IL + +SL+LIDE+G GT+ EG
Sbjct: 735 FRIAAQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEEGTG 794
Query: 452 LATSILQYLRDRVGLAVVTTHYADLSC------LKDKDTRFENAA---TEFSLETLRPTY 502
++ ++ ++L + TTH+ +L C L ++ FE T + + + TY
Sbjct: 795 ISYAVCEHLLSTKAFTLFTTHFLEL-CHIDTLYLNVENMHFEVQHVKNTSRNKDAILYTY 853
Query: 503 RILWGSTGDSN-ALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKS 548
++ G T + + L A++ I+ A+++ ++ + Q+R+S
Sbjct: 854 KLSRGLTEEKHYGLKAAEASSLPPSIVLDAREITTQITRQISQNRRS 900
Score = 42 (19.8 bits), Expect = 8.0e-13, Sum P(2) = 8.0e-13
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 75 VNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDR 130
VN K+T L +L+ PL LKNC+ L G D + +IL++
Sbjct: 433 VNAAESKITNLIYLK-HTLELVDPLKVALKNCS-TPLLRAYYGSLEDHRFGLILEK 486
Score = 40 (19.1 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 82 LTEAAELDGDSLQRYSPLLELLKNCNFLT 110
++ A + G+S + ++ + E KN NF T
Sbjct: 233 MSNTACVVGNSTKLFTLITENFKNVNFTT 261
>UNIPROTKB|E2RJA9 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150
EMBL:AAEX03004895 EMBL:AAEX03004896 Ensembl:ENSCAFT00000037908
Uniprot:E2RJA9
Length = 930
Score = 213 (80.0 bits), Expect = 9.2e-13, Sum P(2) = 9.2e-13
Identities = 55/204 (26%), Positives = 99/204 (48%)
Query: 354 VVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLS 413
++ITGPN GK+ +K + L +M++ G Y+PA+ + + I I +E N S
Sbjct: 670 LIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAE-YSSFRIAEQIFTRISTDDDIETNSS 728
Query: 414 TFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473
TF + I IL + +SL+LIDE+G GT EG+ + ++ +YL + TH+
Sbjct: 729 TFMKEMKEIAYILHNANNKSLILIDELGRGTSTEEGIGICYAVCEYLLSLKAFTLFATHF 788
Query: 474 ADLSCLKDKDTRFENAATEF--------SLETLRPTYRILWGSTGDSN-ALNIAKSIGFD 524
+L ++ EN E + E + TY++ G T + N L A+
Sbjct: 789 LELCHIEALYPNVENMHFEVQHVKDTSRNKEAILYTYKLCKGLTEEKNYGLKAAEVSSLP 848
Query: 525 RKIIQRAQKLVERLRPERQQHRKS 548
I+ A+++ ++ + Q+++S
Sbjct: 849 PSIVLDAKEITAQITRQILQNQRS 872
Score = 40 (19.1 bits), Expect = 9.2e-13, Sum P(2) = 9.2e-13
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 82 LTEAAELDGDSLQRYSPLLELLKNCNFLT 110
++ A + G+S + ++ + E KN NF T
Sbjct: 205 MSNTACVVGNSTKLFTLITENFKNVNFTT 233
>UNIPROTKB|Q7RKG5 [details] [associations]
symbol:PY02936 "G/T mismatch binding protein-related"
species:73239 "Plasmodium yoelii yoelii" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 HSSP:Q56215 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
KO:K08737 InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677 EMBL:AABL01000828
RefSeq:XP_730891.1 ProteinModelPortal:Q7RKG5 STRING:Q7RKG5
GeneID:3830116 KEGG:pyo:PY02936 EuPathDB:PlasmoDB:PY02936
Uniprot:Q7RKG5
Length = 1261
Score = 206 (77.6 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 61/243 (25%), Positives = 117/243 (48%)
Query: 341 VPIDIKVECETR---VVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDL 397
+P +I + C+ +++TGPN GGK+ ++ ++ ++++ G ++P+ + L D
Sbjct: 994 IPNNIYMGCDKEKETTLLLTGPNMGGKSTLLRQTAISVILAQIGAFVPS-TYCELTIVDK 1052
Query: 398 ILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSIL 457
I +G +L + STF + I ++L+ ++ SL ++DE+G GT +G A+A S L
Sbjct: 1053 IFTRLGSSDNLFEGKSTFLVELEDISNLLKQSTKYSLAILDELGRGTSSFDGTAIALSTL 1112
Query: 458 QYLRDRVGL-AVVTTHYADLSCLKDKDTRFENAATEFSL----ETLRPTYRILWGSTGDS 512
+ + D + + +THY L +T N S+ E + Y+ + G S
Sbjct: 1113 EQISDVIKCRCIFSTHYHLLVEEVKHNTNISNYHMSLSIDDDQEKIIFLYKFIKGICPKS 1172
Query: 513 NALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAA--S 570
++IAK G ++II+ A + + K Y++++ K AA S
Sbjct: 1173 FGIHIAKLAGLPKEIIELAHEKSLLFENVTDEFCKIIKYKNIIRSLLKASDDTTLAAIAS 1232
Query: 571 LHA 573
LH+
Sbjct: 1233 LHS 1235
>UNIPROTKB|E1BK76 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007129 "synapsis"
evidence=IEA] [GO:0001541 "ovarian follicle development"
evidence=IEA] [GO:0000795 "synaptonemal complex" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0007283 GO:GO:0006298
GO:GO:0001541 GO:GO:0030983 GO:GO:0007292 GO:GO:0007129
GO:GO:0000795 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150
EMBL:DAAA02008282 EMBL:DAAA02008283 EMBL:DAAA02008284
IPI:IPI00710010 Ensembl:ENSBTAT00000024552 Uniprot:E1BK76
Length = 855
Score = 202 (76.2 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 55/204 (26%), Positives = 100/204 (49%)
Query: 355 VITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLST 414
+ITGPN GK+ +K + L +M++ G Y+PA+ + + I I +E N ST
Sbjct: 596 IITGPNMSGKSTYLKQIALCQIMAQIGSYVPAE-YSSFRIAEQIFTRISTDDDIETNSST 654
Query: 415 FSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474
F + + IL + +SL+LIDE+G GT+ EG+ + ++ ++L + TH+
Sbjct: 655 FMKEMKEVAYILHNANDKSLILIDELGRGTNTEEGIGICYAVCEHLLSLKAFTLFATHFL 714
Query: 475 DLSCLKD------KDTRFENAA---TEFSLETLRPTYRILWGSTGDSN-ALNIAKSIGFD 524
+L C D ++ FE T + E + TY++ G T + N L A+
Sbjct: 715 EL-CQIDVLYPNVENMHFEVQHVKNTSRNKEAILYTYKLSKGLTEEKNYGLKAAEVSSLP 773
Query: 525 RKIIQRAQKLVERLRPERQQHRKS 548
I+ A+ + ++ + Q+++S
Sbjct: 774 PSIVLDAKDITTQITRQILQNQRS 797
Score = 49 (22.3 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 20/56 (35%), Positives = 25/56 (44%)
Query: 75 VNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDR 130
VN K+T L +L+ PL LKNCN L G D + IILD+
Sbjct: 330 VNVAESKITNLICLK-HTLELVDPLKITLKNCN-TPLLRAYYGSLEDKRFGIILDK 383
Score = 40 (19.1 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 82 LTEAAELDGDSLQRYSPLLELLKNCNFLT 110
++ A + G+S + ++ + E KN NF T
Sbjct: 130 MSNTACVVGNSTKLFTLITENFKNVNFTT 158
>UNIPROTKB|E1BYJ2 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AADN02036252 IPI:IPI00822608
Ensembl:ENSGALT00000039625 ArrayExpress:E1BYJ2 Uniprot:E1BYJ2
Length = 1341
Score = 216 (81.1 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 59/194 (30%), Positives = 97/194 (50%)
Query: 350 ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLE 409
E V++TGPN GGK+ M+ GL +M++ G Y+PA+ RL D + +G +
Sbjct: 1107 EASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAEVC-RLTPIDRVFTRLGASDRIM 1165
Query: 410 QNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVV 469
STF +S IL+ + SLVL+DE+G GT +G A+A+++++ L + + +
Sbjct: 1166 SGESTFFVELSETSSILQHATEHSLVLVDELGRGTATFDGTAIASAVVRELAENIKCRTL 1225
Query: 470 -TTHYADL------SC---LKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAK 519
+THY L S L EN + + S ET+ Y+ + G+ S N A+
Sbjct: 1226 FSTHYHSLVEDYSGSAAVRLGHMACMVENESEDPSQETITFLYKFIEGACPKSYGFNAAR 1285
Query: 520 SIGFDRKIIQRAQK 533
+IIQ+ +
Sbjct: 1286 LADIPEEIIQKGHR 1299
Score = 39 (18.8 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 39 LDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAV 75
L + T + + G L S + L+S S+ + +TL+ +
Sbjct: 582 LTVDTQKILKGSLISCIQEGLISGSQFWSASKTLKVL 618
>UNIPROTKB|Q7SD11 [details] [associations]
symbol:msh-3 "DNA mismatch repair protein msh-3"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0008094
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10
SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 GO:GO:0000735 HOGENOM:HOG000029776 KO:K08736
OMA:KRTKSIY OrthoDB:EOG42NN7M EMBL:AABX02000089 RefSeq:XP_963874.1
ProteinModelPortal:Q7SD11 STRING:Q7SD11
EnsemblFungi:EFNCRT00000009637 GeneID:3880023 KEGG:ncr:NCU08115
Uniprot:Q7SD11
Length = 1145
Score = 204 (76.9 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 73/260 (28%), Positives = 123/260 (47%)
Query: 327 MTVGSLSKGISDFPVPIDIKVECETRVV-VITGPNTGGKTASMKTLGLASLMSKAGLYLP 385
M++G+LS S P P + + +ITGPN GGK++ + + L L+++ G ++P
Sbjct: 851 MSLGTLSSSASS-PDPNPTSPSGKPALAQLITGPNMGGKSSYTRAVALLVLLAQIGSFVP 909
Query: 386 AKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTD 445
A + L D I +G +L + STF +S IL + SLV++DE+G GT
Sbjct: 910 ATSMS-LTLSDAIFTRMGARDNLFKGESTFMVEVSETAAILRQATPRSLVVLDELGRGTS 968
Query: 446 PSEGVALATSILQYLRDRVG-LAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRI 504
+G A+A ++L+Y+ VG L + THY DL+ + + T E +E + +
Sbjct: 969 THDGRAIAGAVLEYVVRDVGCLMLFVTHYQDLAGVAEGLTVGEGEEKRRGVECVHMRFAS 1028
Query: 505 LWGSTG-DSNALNI------AKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEE 557
T D +A+ + + G D+ + L + L P HR L + +
Sbjct: 1029 NKSRTSMDDDAMEVDGDGDGQEGAGADKDEEEEITFLYD-LAPG-VAHRSYGLNVARLAR 1086
Query: 558 --RRKLESQARTAASLHAEI 575
R+ LE AR ++ L E+
Sbjct: 1087 IPRKVLEVAARKSSELEKEV 1106
>UNIPROTKB|E1BWV7 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0000400 "four-way
junction DNA binding" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0032143 "single thymine insertion binding" evidence=IEA]
[GO:0032301 "MutSalpha complex" evidence=IEA] [GO:0032357 "oxidized
purine DNA binding" evidence=IEA] [GO:0032405 "MutLalpha complex
binding" evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA] [GO:0051096
"positive regulation of helicase activity" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0000287
GO:GO:0043531 GO:GO:0003682 GO:GO:0016887 GO:GO:0006298
GO:GO:0000790 InterPro:IPR000313 PROSITE:PS50812 GO:GO:0045910
SMART:SM00293 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032357 GO:GO:0032142 GO:GO:0032143
GO:GO:0051096 OMA:YHMDAVI InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AADN02036252 IPI:IPI00571940
Ensembl:ENSGALT00000014567 ArrayExpress:E1BWV7 Uniprot:E1BWV7
Length = 1357
Score = 216 (81.1 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 59/194 (30%), Positives = 97/194 (50%)
Query: 350 ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLE 409
E V++TGPN GGK+ M+ GL +M++ G Y+PA+ RL D + +G +
Sbjct: 1123 EASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAEVC-RLTPIDRVFTRLGASDRIM 1181
Query: 410 QNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVV 469
STF +S IL+ + SLVL+DE+G GT +G A+A+++++ L + + +
Sbjct: 1182 SGESTFFVELSETSSILQHATEHSLVLVDELGRGTATFDGTAIASAVVRELAENIKCRTL 1241
Query: 470 -TTHYADL------SC---LKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAK 519
+THY L S L EN + + S ET+ Y+ + G+ S N A+
Sbjct: 1242 FSTHYHSLVEDYSGSAAVRLGHMACMVENESEDPSQETITFLYKFIEGACPKSYGFNAAR 1301
Query: 520 SIGFDRKIIQRAQK 533
+IIQ+ +
Sbjct: 1302 LADIPEEIIQKGHR 1315
Score = 39 (18.8 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 39 LDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAV 75
L + T + + G L S + L+S S+ + +TL+ +
Sbjct: 598 LTVDTQKILKGSLISCIQEGLISGSQFWSASKTLKVL 634
>UNIPROTKB|Q7S4J6 [details] [associations]
symbol:NCU08135 "DNA mismatch repair protein msh6"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
PIRSF:PIRSF037677 HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
EMBL:AABX02000052 RefSeq:XP_959678.2 UniGene:Ncr.20761
ProteinModelPortal:Q7S4J6 STRING:Q7S4J6
EnsemblFungi:EFNCRT00000008326 GeneID:3875816 KEGG:ncr:NCU08135
Uniprot:Q7S4J6
Length = 1237
Score = 214 (80.4 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 61/217 (28%), Positives = 111/217 (51%)
Query: 322 VENSEMTVGSLSKGISDFPVPIDIKVEC-ETRVVVITGPNTGGKTASMKTLGLASLMSKA 380
VE +E+ + + DF +P DIK+ E + ++TG N GK+ ++ +A +M++
Sbjct: 961 VEFNELRHPCMLNTVDDF-IPNDIKLGGDEANINLLTGANAAGKSTILRMSCIAVIMAQI 1019
Query: 381 GLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEI 440
G Y+PA + RL D I++ +G + ++ STF +S IL + SLV++DE+
Sbjct: 1020 GCYVPAVS-ARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDEL 1078
Query: 441 GSGTDPSEGVALATSILQYLRDRVG-LAVVTTHYADLSCLKDKDTRFENAATEFSL--ET 497
G GT +GVA+A ++L ++ +G + THY L+ + + ++ E
Sbjct: 1079 GRGTSSYDGVAVAQAVLHHVASHIGCVGFFATHYHSLATEFENHPEIRARRMQIAVDEEN 1138
Query: 498 LRPT--YRILWGSTGDSNALNIAKSIGFDRKIIQRAQ 532
R T Y++ G S ++ A G K+I+R++
Sbjct: 1139 KRITFLYKLEDGVAEGSFGMHCAAMCGIPDKVIRRSE 1175
Score = 40 (19.1 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 121 DCKLLIILDRASEDLELIRAERKRNMENLDSLLKK 155
D KLLI ED + +AE R L LL++
Sbjct: 800 DDKLLIPEPGIEEDFDRSQAELDRIKGELQELLER 834
Score = 38 (18.4 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 129 DRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAG 164
DR+ +L+ I+ E + +E + L+ A+ G
Sbjct: 815 DRSQAELDRIKGELQELLERQKTALRCKTAKFTDVG 850
Score = 37 (18.1 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 133 EDLELIRAERKRNMENLDSLLKKVAAQIFQAGGID 167
++LE + E + E ++K+VA++ F+ +D
Sbjct: 883 KELEDLVRELQEAEETHSQIVKEVASRFFKRFDLD 917
>UNIPROTKB|G4NEZ2 [details] [associations]
symbol:MGG_00704 "DNA mismatch repair protein msh6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CM001235
GO:GO:0006298 GO:GO:0030983 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
InterPro:IPR017261 PIRSF:PIRSF037677 RefSeq:XP_003718302.1
ProteinModelPortal:G4NEZ2 EnsemblFungi:MGG_00704T0 GeneID:2675105
KEGG:mgr:MGG_00704 Uniprot:G4NEZ2
Length = 1218
Score = 212 (79.7 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 60/217 (27%), Positives = 109/217 (50%)
Query: 322 VENSEMTVGSLSKGISDFPVPIDIKVECE-TRVVVITGPNTGGKTASMKTLGLASLMSKA 380
VE E+ + + DF +P DIK+ + + ++TG N GK+ ++ +A +M++
Sbjct: 942 VEFEELRHPCMLNTVDDF-IPNDIKLGGDDANINLLTGANAAGKSTVLRMSCIAVIMAQI 1000
Query: 381 GLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEI 440
G Y+PA + RL D I++ +G + ++ STF +S IL + SLV++DE+
Sbjct: 1001 GCYVPAVS-ARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDEL 1059
Query: 441 GSGTDPSEGVALATSILQYLRDRVG-LAVVTTHYADLSCLKDKDTRFENAATEFSLETL- 498
G GT +GVA+A ++L ++ +G + THY L+ + + ++
Sbjct: 1060 GRGTSSYDGVAVAQAVLHHVASHIGCVGFFATHYHSLATEFENHPEIRAKRMQIQVDDAK 1119
Query: 499 -RPT--YRILWGSTGDSNALNIAKSIGFDRKIIQRAQ 532
R T YR+ G S ++ A G ++I+RA+
Sbjct: 1120 RRVTFLYRLEDGVAEGSFGMHCAAMCGISDRVIERAE 1156
Score = 41 (19.5 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 136 ELIRAERKRNMENLDSLLKKVAAQIFQAGGID 167
EL+R E + E ++K VAA+ F+ +D
Sbjct: 868 ELVR-ELQEAEETHSQIVKDVAARFFKRFDVD 898
>UNIPROTKB|F1N8B7 [details] [associations]
symbol:F1N8B7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] [GO:0000795 "synaptonemal complex"
evidence=IEA] [GO:0007129 "synapsis" evidence=IEA] [GO:0007292
"female gamete generation" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007129
GO:GO:0000795 SUPFAM:SSF48334 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 EMBL:AADN02049793 IPI:IPI00814446
Ensembl:ENSGALT00000004315 Uniprot:F1N8B7
Length = 791
Score = 209 (78.6 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 65/199 (32%), Positives = 102/199 (51%)
Query: 348 ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQS 407
E R+ +ITGPN+ GK+ +K +GL M+ G Y+PA + D I I +S
Sbjct: 539 EATRRIKIITGPNSSGKSIYLKQVGLIIFMALIGSYVPAAE-AEIGAIDGIYTRIHTRES 597
Query: 408 LEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR---V 464
+ LSTF ++++ + + SLVLIDE G GT+ +G+AL ++L+Y ++
Sbjct: 598 VSVGLSTFMIDLNQVAKAVNNATERSLVLIDEFGKGTNTLDGLALLAAVLKYWINQGTQC 657
Query: 465 GLAVVTTHYADLSCLKD-KDTRF-ENAATEFSLE--TLRPTYRILWGSTGDSNALNIAKS 520
V+T++ L L+ DT E A E + L Y+I G + S+A NIA
Sbjct: 658 PQVFVSTNFHSLMQLELLPDTPLLEYLAMETHQDGDELVFFYQIKQGVSTVSHAANIAAL 717
Query: 521 IGFDRKIIQRAQKLVERLR 539
G KII+R ++ E +R
Sbjct: 718 AGMPAKIIERGVEVSELIR 736
Score = 39 (18.8 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 12/55 (21%), Positives = 26/55 (47%)
Query: 229 EETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSH 283
+ET I+ L +I + + + +++ +D+ A A A+ + C +Q H
Sbjct: 458 QETLIMHQLQTKILERSQVLNNVIEYTAHLDVLLALAVMAR-ENSYCRPRFTQRH 511
>SGD|S000002504 [details] [associations]
symbol:MSH6 "Protein required for mismatch repair in mitosis
and meiosis, forms a" species:4932 "Saccharomyces cerevisiae"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0032301
"MutSalpha complex" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0036297 "interstrand cross-link
repair" evidence=IGI] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IEA;IDA;IMP] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0000228
"nuclear chromosome" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0000710 "meiotic
mismatch repair" evidence=IMP] [GO:0032137 "guanine/thymine mispair
binding" evidence=IDA] [GO:0032138 "single base insertion or
deletion binding" evidence=IMP;IDA] [GO:0000400 "four-way junction
DNA binding" evidence=IDA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 SGD:S000002504
GO:GO:0005524 KO:K06630 GO:GO:0009411 GO:GO:0003684 EMBL:BK006938
GO:GO:0030983 EMBL:Z47746 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 RefSeq:NP_010384.3 GeneID:851676 KEGG:sce:YDR099W
GO:GO:0008094 GO:GO:0036297 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0000710 GO:GO:0032301
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
OMA:YHMDAVI InterPro:IPR017261 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
PIR:S51246 RefSeq:NP_010382.3 ProteinModelPortal:Q03834 SMR:Q03834
DIP:DIP-2423N IntAct:Q03834 MINT:MINT-618151 STRING:Q03834
PaxDb:Q03834 PeptideAtlas:Q03834 EnsemblFungi:YDR097C GeneID:851671
KEGG:sce:YDR097C CYGD:YDR097c NextBio:969292 Genevestigator:Q03834
GermOnline:YDR097C Uniprot:Q03834
Length = 1242
Score = 218 (81.8 bits), Expect = 2.5e-12, Sum P(3) = 2.5e-12
Identities = 60/207 (28%), Positives = 106/207 (51%)
Query: 338 DFPVPIDIKVECET-RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFD 396
DF +P DI++ E R+ ++TG N GK+ ++ +A +M++ G Y+P ++ P D
Sbjct: 962 DF-IPNDIELGKEQPRLGLLTGANAAGKSTILRMACIAVIMAQMGCYVPCESAVLTP-ID 1019
Query: 397 LILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSI 456
I+ +G + ++ Q STF ++ IL++ + SL+++DE+G G S+G A+A S+
Sbjct: 1020 RIMTRLGANDNIMQGKSTFFVELAETKKILDMATNRSLLVVDELGRGGSSSDGFAIAESV 1079
Query: 457 LQYLRDRV-GLAVVTTHYADL-SCLKDK-DTRFENAATEFSLETLRPT--YRILWGSTGD 511
L ++ + L THY L S K R + T T Y++L G +
Sbjct: 1080 LHHVATHIQSLGFFATHYGTLASSFKHHPQVRPLKMSILVDEATRNVTFLYKMLEGQSEG 1139
Query: 512 SNALNIAKSIGFDRKIIQRAQKLVERL 538
S +++A G ++II AQ + L
Sbjct: 1140 SFGMHVASMCGISKEIIDNAQIAADNL 1166
Score = 41 (19.5 bits), Expect = 2.5e-12, Sum P(3) = 2.5e-12
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 128 LDRASEDLELIRAERKRNMENLDSLLKKV 156
+D A+ +L+++ E LD+L+ +V
Sbjct: 472 IDTATGELQMLEFEDDSECTKLDTLMSQV 500
Score = 37 (18.1 bits), Expect = 2.5e-12, Sum P(3) = 2.5e-12
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 322 VENSEMTVGSLSKGISDFP 340
++N+++ G +SK IS FP
Sbjct: 733 LKNNDLK-GDVSKYISSFP 750
>UNIPROTKB|F1P9S9 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:KRTKSIY
GeneTree:ENSGT00550000074949 EMBL:AAEX03002106
Ensembl:ENSCAFT00000013983 Uniprot:F1P9S9
Length = 1058
Score = 210 (79.0 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 50/163 (30%), Positives = 91/163 (55%)
Query: 322 VENSEMTVGSLSKGISDFPVPIDIKVECET-RVVVITGPNTGGKTASMKTLGLASLMSKA 380
++N V + G D VP + ++ RV++ITGPN GGK++ +K + L ++M++
Sbjct: 782 IKNGRHPVIDVLLGEQDQYVPNSTNLSGDSERVMIITGPNMGGKSSYIKQVALITIMAQI 841
Query: 381 GLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEI 440
G Y+PA+ + D I +G ++ + STF + +I+ + +SLV++DE+
Sbjct: 842 GSYVPAEE-ATIGIVDGIFTRMGAADNIYKGQSTFMEELMDTAEIIRQATSQSLVILDEL 900
Query: 441 GSGTDPSEGVALATSILQ-YLRDRVGLAVVTTHYADLSCLKDK 482
G GT +G+A+A + L+ ++RD L + THY + C +K
Sbjct: 901 GRGTSTHDGIAIAYATLEHFIRDVKSLTLFVTHYPPV-CELEK 942
Score = 40 (19.1 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 31/175 (17%), Positives = 76/175 (43%)
Query: 17 LEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVN 76
L+ ++L+ S+ +++ L IE G+ + + + S E + +TL +
Sbjct: 517 LDAVSEVLHSESSVFGQIENHLRKLPDIE--RGLCS--IYHKKCSTQEFFLIVKTLYHLK 572
Query: 77 NVWKKLTEA--AELDGDSLQRYS-PLLELLKNC-NFLTELEE---KIG----FCIDCKLL 125
+ ++ L A + + D L+ + + ELL ++L L E KIG D
Sbjct: 573 SEFQALIPAVNSHVQSDLLRTFILEIPELLSPVEHYLRILNEQAAKIGDKTELFKDLTDF 632
Query: 126 IILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCV 180
++ + ++++ + + + +++ + +LK + Q G + + K + C+
Sbjct: 633 PLIKKRKDEIQEVTDKIQMHLQEIRKILKNPSLQYVTVSGQEFMIEIKNSAVSCI 687
>UNIPROTKB|Q5VR41 [details] [associations]
symbol:OJ1174_D05.15 "Os01g0180600 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 EMBL:AP008207 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 InterPro:IPR015536 PANTHER:PTHR11361:SF31
HOGENOM:HOG000030287 ProtClustDB:CLSN2680110 EMBL:AP003047
EMBL:AP003118 RefSeq:NP_001042208.1 UniGene:Os.74356 STRING:Q5VR41
EnsemblPlants:LOC_Os01g08540.1 GeneID:4325353 KEGG:osa:4325353
OMA:KFYELYD Uniprot:Q5VR41
Length = 1224
Score = 200 (75.5 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 62/220 (28%), Positives = 106/220 (48%)
Query: 354 VVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLS 413
+++TGPN GGK+ M+ LA ++++ G Y+P ++ L D I IG + S
Sbjct: 968 LLLTGPNMGGKSTIMRATCLAIVLAQLGCYVPCQSC-ELTLADAIFTRIGAMDRIMSGES 1026
Query: 414 TFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVV-TTH 472
TF + ILE + +SLVL+DE+G GT +G A+A ++ ++L + V ++ TH
Sbjct: 1027 TFLVECTETASILENATEDSLVLLDELGRGTSTFDGYAIAYAVFRHLVEAVRCRLLFATH 1086
Query: 473 YADLS--CLKDKDTRFENAAT--------EFSLETLRPTYRILWGSTGDSNALNIAKSIG 522
Y L+ ++ A + + L YR+ G+ +S L +A G
Sbjct: 1087 YHPLTKEFASHPHVTLQHMACMLKPRNGGDGGEKELTFLYRLTSGACPESYGLQVATMAG 1146
Query: 523 FDRKIIQRAQKLVERLRPE-----RQQHRKSELYQSLMEE 557
R I++RA E +R + R ++E + +L EE
Sbjct: 1147 LPRSIVERASAAGEMMRSKIAGNFRSSEERAE-FSTLHEE 1185
>DICTYBASE|DDB_G0283957 [details] [associations]
symbol:msh4 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=ISS;IBA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0000228
"nuclear chromosome" evidence=ISS] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0051026 "chiasma assembly" evidence=IBA] [GO:0045143
"homologous chromosome segregation" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0283957 GO:GO:0005524
GenomeReviews:CM000153_GR GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
EMBL:AAFI02000058 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 KO:K08740 SUPFAM:SSF48334
SUPFAM:SSF53150 OMA:MSGKSVY RefSeq:XP_638826.1
ProteinModelPortal:Q54QB8 EnsemblProtists:DDB0229912 GeneID:8624350
KEGG:ddi:DDB_G0283957 InParanoid:Q54QB8 ProtClustDB:CLSZ2728957
Uniprot:Q54QB8
Length = 1041
Score = 199 (75.1 bits), Expect = 4.6e-12, P = 4.6e-12
Identities = 61/212 (28%), Positives = 104/212 (49%)
Query: 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
VP D + +I G N GK+ ++ + L ++++ G +LPA+ +P D I++
Sbjct: 779 VPNDTLINETASFQLIHGCNMSGKSTYIQQVALLTIVAHIGYFLPAE-FATVPIVDQIIS 837
Query: 401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460
+G +++ N STF + I ILE + SLV+IDE+G GT +G ++A SI ++L
Sbjct: 838 RLGTSDNIQSNASTFMTEMKEISYILENTTESSLVIIDELGRGTSNMDGSSIAWSISEHL 897
Query: 461 RDRVGL-AVVTTHYADLSCLKD--KDTR-FENAATEFSLETLRPTYRILWG-STGDSNAL 515
+G + THY L L + R + ++ L+ Y G S+ DS +
Sbjct: 898 -SMIGCYTLFVTHYQQLLNLATFYPNIRVYHFQVSKDDSSGLKYNYLFSEGVSSIDSYGV 956
Query: 516 NIAKSIGFDRKIIQRAQKLVERLRPERQQHRK 547
A+ G D K+IQ A K + L + + +
Sbjct: 957 ETAELAGIDSKVIQSA-KTIRNLLESKSNNNQ 987
>UNIPROTKB|Q8EYH8 [details] [associations]
symbol:LA_4236 "DNA mismatch repair protein ATPase
component" species:189518 "Leptospira interrogans serovar Lai str.
56601" [GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
InterPro:IPR000432 Pfam:PF00488 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0030983 GO:GO:0008094
GO:GO:0032300 EMBL:AE010300 GenomeReviews:AE010300_GR
RefSeq:NP_714416.1 ProteinModelPortal:Q8EYH8 GeneID:1153578
KEGG:lil:LA_4236 PATRIC:22389315 HOGENOM:HOG000117340 OMA:RERSLAC
ProtClustDB:CLSK575192 BioCyc:LINT189518:GJBB-3356-MONOMER
Uniprot:Q8EYH8
Length = 610
Score = 195 (73.7 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
Identities = 61/186 (32%), Positives = 95/186 (51%)
Query: 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILAD 401
P+D +E E VV+ITG N GKT ++T+G+AS++S AG +PA LP I
Sbjct: 427 PLDF-IE-EQNVVLITGSNMSGKTTYLRTIGVASILSMAGGPVPASKFS-LPVLK-IHTS 482
Query: 402 IGDHQSLEQNLSTFSGHISRIVDILELVSRES---LVLIDEIGSGTDPSEGVALATSILQ 458
+ + +LE+ +S F + R+ +I++ + ++ LVL+DEI GT+ E IL+
Sbjct: 483 MRNEDNLEEGISFFYAEVRRLSEIVKKIRDKNSSHLVLLDEILKGTNTRERSLACKGILK 542
Query: 459 YLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIA 518
L+ + VT+H DL K + ++ E T+ Y+I G SNAL I
Sbjct: 543 ELKKNRTIVFVTSH--DLELAKVEGVILKHFQEEVLDGTMYFDYKIREGLVETSNALRIL 600
Query: 519 KSIGFD 524
G D
Sbjct: 601 VQEGLD 606
Score = 46 (21.3 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 97 SPLLELLKNCNFLTELE--EKIGFCIDCKLLIILDRASEDLEL 137
+PLL L+ N FL +L +KI + K ++L+++ EDL L
Sbjct: 336 APLLHLILNNLFLYDLWVLQKISKWKE-KHSVLLEKSIEDLTL 377
>UNIPROTKB|Q5BDA1 [details] [associations]
symbol:AN1479.2 "DNA-binding protein of the mitochondria
(Eurofung)" species:227321 "Aspergillus nidulans FGSC A4"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0005739
"mitochondrion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032139 "dinucleotide insertion or
deletion binding" evidence=IBA] [GO:0032300 "mismatch repair
complex" evidence=IBA] [GO:0043504 "mitochondrial DNA repair"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IRD]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0000710 "meiotic
mismatch repair" evidence=IRD] [GO:0007131 "reciprocal meiotic
recombination" evidence=IRD] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IRD] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005739 GO:GO:0005524
GO:GO:0003684 EMBL:BN001307 GO:GO:0006298 GO:GO:0008094
EMBL:AACD01000022 GO:GO:0043504 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150
GO:GO:0032300 GO:GO:0032139 RefSeq:XP_659083.1 STRING:Q5BDA1
EnsemblFungi:CADANIAT00008100 GeneID:2875263 KEGG:ani:AN1479.2
OMA:RVGGFYE Uniprot:Q5BDA1
Length = 924
Score = 185 (70.2 bits), Expect = 6.7e-12, Sum P(2) = 6.7e-12
Identities = 49/194 (25%), Positives = 98/194 (50%)
Query: 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQN 411
R+ +ITGPN GK+ ++ L +++++ G ++PA ++ + D I + IG L ++
Sbjct: 719 RIWLITGPNMAGKSTFLRQNALITILAQVGSFVPA-DYAEIGIVDQIFSRIGAADDLFRD 777
Query: 412 LSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVV-T 470
STF + IL+ + S V++DE+G GT P +G A++ + L +L R +
Sbjct: 778 QSTFMVEMLETAAILKQATARSFVIMDEVGRGTTPEDGTAVSFACLHHLHYRNQCRTLFA 837
Query: 471 THYADLSCLKDKDTRFENAATEFSLET---LRPTYRILWGSTGDSNALNIAKSIGFDRKI 527
TH+ L+ + + T+ T +++ G +S+AL +A+ G +
Sbjct: 838 THFHGLADMTQEFPALGRYCTDVKETTEGRFSFVHKLRKGINRESHALKVAQLAGLPSET 897
Query: 528 IQRAQKLVERLRPE 541
++ A+ + + +R E
Sbjct: 898 LELARSVRDSIRGE 911
Score = 61 (26.5 bits), Expect = 6.7e-12, Sum P(2) = 6.7e-12
Identities = 27/99 (27%), Positives = 42/99 (42%)
Query: 181 GIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAE 240
G K S + L G+ NVSS+ +T E ++ EE AI L E
Sbjct: 583 GAKVSQQQLEDIGVTRNVSSTKSTRSFYLPAWTELGGRMDQIKVQIRQEEQAIFEQLRRE 642
Query: 241 IAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILS 279
+ + +I+ + E+D+A + A A V PIL+
Sbjct: 643 VILNLVKIRRNASVMDELDVACSFATLAAEQQLVRPILT 681
>UNIPROTKB|Q5B374 [details] [associations]
symbol:AN5006.2 "Putative uncharacterized protein"
species:227321 "Aspergillus nidulans FGSC A4" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007720 InterPro:IPR007860
InterPro:IPR007861 Pfam:PF00488 Pfam:PF01624 Pfam:PF05024
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0016021 GO:GO:0005524
GO:GO:0003684 GO:GO:0030466 GO:GO:0006506 EMBL:AACD01000084
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0008094 GO:GO:0006311 GO:GO:0017176
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 HOGENOM:HOG000196498
KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
OrthoDB:EOG4S7NZ5 GO:GO:0000735 RefSeq:XP_662610.1
ProteinModelPortal:Q5B374 STRING:Q5B374 GeneID:2872806
KEGG:ani:AN5006.2 Uniprot:Q5B374
Length = 1644
Score = 213 (80.0 bits), Expect = 8.1e-12, Sum P(2) = 8.1e-12
Identities = 45/134 (33%), Positives = 79/134 (58%)
Query: 350 ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLE 409
E+ ++ITGPN GGK+ ++ +G+ +LM++ G ++P L FD ILA +G S
Sbjct: 657 ESSFLIITGPNMGGKSTYIRMIGVIALMAQIGCFVPC-TEAELTIFDCILARVGASDSQL 715
Query: 410 QNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG-LAV 468
+ +STF + +IL+ + ESL++IDE+G GT +G LA +I +++ + +
Sbjct: 716 KGVSTFMAEMLETSNILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIVTEIRCFGL 775
Query: 469 VTTHYADLSCLKDK 482
TH+ +L+ L D+
Sbjct: 776 FATHFHELTTLADR 789
Score = 37 (18.1 bits), Expect = 8.1e-12, Sum P(2) = 8.1e-12
Identities = 7/10 (70%), Positives = 10/10 (100%)
Query: 530 RAQKLVERLR 539
RAQ+LV++LR
Sbjct: 1150 RAQRLVDKLR 1159
>UNIPROTKB|E9PGY4 [details] [associations]
symbol:MSH5-SAPCD1 "Protein MSH5-SAPCD1" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
EMBL:CR759787 GO:GO:0006298 GO:GO:0030983 EMBL:AL662834
EMBL:CR936239 SUPFAM:SSF48334 EMBL:CR925765 HGNC:HGNC:7328
HGNC:HGNC:41994 IPI:IPI00790547 SMR:E9PGY4 Ensembl:ENST00000548094
Ensembl:ENST00000549604 Ensembl:ENST00000549746 Uniprot:E9PGY4
Length = 271
Score = 179 (68.1 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 39/108 (36%), Positives = 65/108 (60%)
Query: 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQN 411
RV VITGPN+ GK+ +K +GL + M+ G ++PA+ + D I I +S+
Sbjct: 118 RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESISLG 176
Query: 412 LSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
LSTF ++++ + + +SLVLIDE G GT+ +G+AL ++L++
Sbjct: 177 LSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRH 224
Score = 39 (18.8 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 22/80 (27%), Positives = 35/80 (43%)
Query: 20 SQKLLNQTSAALAMMQSQPLDLST-IEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNV 78
S++ L+ SA + + DL I D +L + Q+L+ + + L + +V
Sbjct: 4 SEEKLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDV 63
Query: 79 WKKLTEAAELDGDSLQRYSP 98
L AA G S RYSP
Sbjct: 64 LLALASAARDYGYSRPRYSP 83
>UNIPROTKB|Q89VX1 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224911 "Bradyrhizobium japonicum USDA 110" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:BA000040 GenomeReviews:BA000040_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:NP_767564.1
ProteinModelPortal:Q89VX1 GeneID:1049823 KEGG:bja:bll0924
PATRIC:21185344 BioCyc:BJAP224911:GJEJ-933-MONOMER Uniprot:Q89VX1
Length = 912
Score = 200 (75.5 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 57/225 (25%), Positives = 104/225 (46%)
Query: 355 VITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLST 414
++TGPN GK+ ++ L +L+++ G ++PA R+ D + + +G L + ST
Sbjct: 658 LLTGPNMAGKSTFLRQNALIALLAQIGSFVPA-TRARIGIIDRLFSRVGAADDLARGRST 716
Query: 415 FSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVV-TTHY 473
F + IL +LV++DEIG GT +G+++A + +++L + + THY
Sbjct: 717 FMVEMVETAAILNQAGERALVILDEIGRGTATFDGLSIAWAAIEHLHESNRCRTLFATHY 776
Query: 474 ADLSCLKDKDTRFENAATEFS--LETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRA 531
+L+ L K R NA + + +L GS S + +AK G +I RA
Sbjct: 777 HELTALSAKLPRMFNATVRVKEWQGNVVFLHEVLPGSADRSYGIQVAKLAGLPPAVITRA 836
Query: 532 QKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIM 576
+ ++ +L + + L L + A A AE++
Sbjct: 837 KSVLAKLEAQDRGQTARALADDLPLFAVPSRAAAEAAPPSEAELL 881
Score = 42 (19.8 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 31/143 (21%), Positives = 59/143 (41%)
Query: 124 LLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQA--GGIDKPLITKRRSRMCVG 181
++ L R S +L AE ++ L+K+ + Q +D+ + SR+ V
Sbjct: 426 VMAALTRPSRELA---AEFATALDEQLPLIKRDGGFVRQGYEPALDEARNLRDASRLVVA 482
Query: 182 IKASHKYLLPDGI-ALNVSSSGAT-YFMEPKGAVEFNNMEVRLSNSEIAEETAI--LSLL 237
+ +Y G+ L + + YF+E M L+ + I +T +
Sbjct: 483 SMQA-RYADDTGVKGLKIRHNNVLGYFVEVTAQHGDKLMSAPLNATFIHRQTLAGQIRFT 541
Query: 238 TAEIAKSEREIKYLMDRVLEIDL 260
T+E+ + E +I DR L ++L
Sbjct: 542 TSELGEIEAKIANAGDRALGLEL 564
>UNIPROTKB|Q9UFG2 [details] [associations]
symbol:DKFZp434C1615 "Putative uncharacterized protein
DKFZp434C1615" species:9606 "Homo sapiens" [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 PROSITE:PS00486
SMART:SM00534 GO:GO:0005524 EMBL:BX248244 GO:GO:0006298
GO:GO:0030983 SUPFAM:SSF48334 HSSP:Q56215 UniGene:Hs.647011
HGNC:HGNC:7328 ChiTaRS:MSH5 EMBL:BX248133 EMBL:AL122094
IPI:IPI00945579 PIR:T34526 STRING:Q9UFG2 Ensembl:ENST00000554793
HOVERGEN:HBG066397 Uniprot:Q9UFG2
Length = 263
Score = 179 (68.1 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 39/108 (36%), Positives = 65/108 (60%)
Query: 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQN 411
RV VITGPN+ GK+ +K +GL + M+ G ++PA+ + D I I +S+
Sbjct: 110 RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESISLG 168
Query: 412 LSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
LSTF ++++ + + +SLVLIDE G GT+ +G+AL ++L++
Sbjct: 169 LSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRH 216
>UNIPROTKB|H0YF11 [details] [associations]
symbol:MSH5-SAPCD1 "Protein MSH5-SAPCD1" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
EMBL:AL662899 EMBL:CR759787 GO:GO:0006298 GO:GO:0030983
EMBL:AL662834 EMBL:CR936239 SUPFAM:SSF48334 EMBL:CR759915
EMBL:CR925765 EMBL:BX248133 HGNC:HGNC:41994 Ensembl:ENST00000469011
Ensembl:ENST00000476578 Ensembl:ENST00000480622
Ensembl:ENST00000482009 Ensembl:ENST00000492776
Ensembl:ENST00000498473 Uniprot:H0YF11
Length = 264
Score = 179 (68.1 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 39/108 (36%), Positives = 65/108 (60%)
Query: 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQN 411
RV VITGPN+ GK+ +K +GL + M+ G ++PA+ + D I I +S+
Sbjct: 111 RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESISLG 169
Query: 412 LSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
LSTF ++++ + + +SLVLIDE G GT+ +G+AL ++L++
Sbjct: 170 LSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRH 217
>CGD|CAL0002525 [details] [associations]
symbol:orf19.2579 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0002525 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:AACQ01000044 EMBL:AACQ01000043 KO:K08740
SUPFAM:SSF48334 SUPFAM:SSF53150 RefSeq:XP_718245.1
RefSeq:XP_718341.1 ProteinModelPortal:Q5A989 STRING:Q5A989
GeneID:3639992 GeneID:3640161 KEGG:cal:CaO19.10111
KEGG:cal:CaO19.2579 Uniprot:Q5A989
Length = 803
Score = 192 (72.6 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 57/216 (26%), Positives = 113/216 (52%)
Query: 351 TRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQ 410
+R+ VITG N GK+ ++ + +M++ G ++PA+ + R+ F+ + + I +++
Sbjct: 550 SRIHVITGANMSGKSVYLRQIAYLVIMAQMGCFVPAE-YARMRIFNSLYSRISS-DNVDI 607
Query: 411 NLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVT 470
N S+FS +S IL +SL+LIDE+G G+ ++G ++ +IL+ L + + T
Sbjct: 608 NASSFSKEMSETAVILNDSDGDSLILIDELGRGSSLTDGFSICLAILEDLICKEATVITT 667
Query: 471 THYADLSCLKDKDTRFENAATEFSLET---LRPTYRILWGSTGDSN-ALNIAK-SIGFDR 525
TH+ D++ + + A + ++ET L Y ++ G G + A+ S +
Sbjct: 668 THFRDIAQVLANKSCVVTAHMQ-TVETNGQLEMKYNLVLGRNGIVGYGIRFAEVSNLLPQ 726
Query: 526 KIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKL 561
++I+ ++ + LR + H EL L+ R+KL
Sbjct: 727 ELIEDSKVVANILRSRKPVHGDKEL--KLLSRRKKL 760
>TIGR_CMR|SPO_0011 [details] [associations]
symbol:SPO_0011 "DNA mismatch repair protein MutS"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0005524 "ATP binding"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:YP_165284.1
ProteinModelPortal:Q5LWH0 PRIDE:Q5LWH0 GeneID:3194479
KEGG:sil:SPO0011 PATRIC:23373251 Uniprot:Q5LWH0
Length = 877
Score = 190 (71.9 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 55/217 (25%), Positives = 108/217 (49%)
Query: 344 DIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIG 403
D+ + + ++TGPN GK+ ++ L +L+++ G Y+PA + + + + +G
Sbjct: 616 DLSADKGAAIRLLTGPNMAGKSTYLRQNALITLLAQIGSYVPADS-AHIGVVSQLFSRVG 674
Query: 404 DHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR-- 461
L + STF + IL +LV++DEIG GT +G+++A + L++L
Sbjct: 675 ASDDLARGRSTFMVEMVETAAILNQADDHALVILDEIGRGTATYDGLSIAWATLEHLHAT 734
Query: 462 DRVGLAVVTTHYADLSCLKDKDTRFEN---AATEFSLETLRPTYRILWGSTGDSNALNIA 518
+R A+ THY +L+ L EN A E+ E + + + G+ S + +A
Sbjct: 735 NRCR-ALFATHYHELTALAATLDGVENLTVAVKEWEGEVIF-LHEVRKGAADRSYGVQVA 792
Query: 519 KSIGFDRKIIQRAQKLVERL-RPERQQHRKSELYQSL 554
+ G ++ RA+ ++++L + ER+ ++ L L
Sbjct: 793 QLAGLPPSVVARARVVLDQLEKSEREGGKQKALIDDL 829
Score = 48 (22.0 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 15/60 (25%), Positives = 28/60 (46%)
Query: 213 VEFNNMEVRLSNS---EIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQ 269
VE + +E R+ N+ + E + S L+ + + + + E+DLA A A A+
Sbjct: 514 VELSELETRILNAGNHALEIEKRLYSSLSGAVLEQAARLNIAARGLAELDLATALADLAR 573
>WB|WBGene00003421 [details] [associations]
symbol:msh-5 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0051026
"chiasma assembly" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0045143 "homologous chromosome
segregation" evidence=IMP] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0006298
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
KO:K08741 EMBL:AF271389 EMBL:Z73896 EMBL:AF070070 PIR:T20659
PIR:T20660 PIR:T43201 RefSeq:NP_502531.1 UniGene:Cel.19456
ProteinModelPortal:Q19272 STRING:Q19272 EnsemblMetazoa:F09E8.3
GeneID:178268 KEGG:cel:CELE_F09E8.3 UCSC:F09E8.3 CTD:178268
WormBase:F09E8.3 GeneTree:ENSGT00550000074977 HOGENOM:HOG000016447
InParanoid:Q19272 OMA:GRACRIY NextBio:900436 GermOnline:F09E8.3
Uniprot:Q19272
Length = 1369
Score = 189 (71.6 bits), Expect = 4.5e-11, Sum P(3) = 4.5e-11
Identities = 57/196 (29%), Positives = 97/196 (49%)
Query: 355 VITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLST 414
+ITGPN GK+ MK++G+ +S G ++PA+ H ++ D I+ + S+ +ST
Sbjct: 636 IITGPNACGKSVYMKSIGIMVFLSHIGSFVPAR-HAKIGIVDRIVTRMFTVDSVLDGMST 694
Query: 415 FSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR----DRVGLAVVT 470
F+ + ++ L + SLV+IDE G GT G++L S++ Y DR ++
Sbjct: 695 FAKDVEQVALALRKATGNSLVIIDEFGKGTMTEVGLSLLASVMTYWMNRGADRCPHIFLS 754
Query: 471 THYADLSCLKDKDTRFENAATEFSLETLRPT-------YRILWGSTGDSNALNIAKSIGF 523
+H+ L +T N AT + LR +R+ G S AL++AK G
Sbjct: 755 SHFHALPNYIPLET---NIATFLTFTVLREAGGKIKYLFRMTPGLVDCSFALSVAKEEGI 811
Query: 524 DRKIIQRAQKLVERLR 539
+I RA ++ + L+
Sbjct: 812 PPPVIGRACRIYKALK 827
Score = 54 (24.1 bits), Expect = 4.5e-11, Sum P(3) = 4.5e-11
Identities = 19/65 (29%), Positives = 30/65 (46%)
Query: 214 EFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDG 273
EF ++ +RL +S+ TAI+ L + K +R I L+ ID+ + A
Sbjct: 536 EFGDILMRLIDSQ----TAIILTLKTRVMKKKRSIIKLLSIASRIDVLISFGLIAAQNGW 591
Query: 274 VCPIL 278
CP L
Sbjct: 592 NCPAL 596
Score = 44 (20.5 bits), Expect = 4.5e-11, Sum P(3) = 4.5e-11
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 96 YSPLLELLKNCNFLTE-LEEKI--GFCIDCKLLIILDRASEDLELIR 139
Y +LLK N ++E LE + D K +I+ S+DLE I+
Sbjct: 80 YEQSSQLLKIMNDISEDLEFRFLKRLIDDVKPTLIIANRSQDLEFIK 126
>UNIPROTKB|Q19272 [details] [associations]
symbol:msh-5 "MutS protein homolog 5" species:6239
"Caenorhabditis elegans" [GO:0005634 "nucleus" evidence=IMP]
[GO:0007131 "reciprocal meiotic recombination" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0032300 "mismatch
repair complex" evidence=IRD] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0006298 GO:GO:0030983 GO:GO:0007131 GO:GO:0008094
GO:GO:0051026 GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249
SUPFAM:SSF48334 KO:K08741 EMBL:AF271389 EMBL:Z73896 EMBL:AF070070
PIR:T20659 PIR:T20660 PIR:T43201 RefSeq:NP_502531.1
UniGene:Cel.19456 ProteinModelPortal:Q19272 STRING:Q19272
EnsemblMetazoa:F09E8.3 GeneID:178268 KEGG:cel:CELE_F09E8.3
UCSC:F09E8.3 CTD:178268 WormBase:F09E8.3
GeneTree:ENSGT00550000074977 HOGENOM:HOG000016447 InParanoid:Q19272
OMA:GRACRIY NextBio:900436 GermOnline:F09E8.3 Uniprot:Q19272
Length = 1369
Score = 189 (71.6 bits), Expect = 4.5e-11, Sum P(3) = 4.5e-11
Identities = 57/196 (29%), Positives = 97/196 (49%)
Query: 355 VITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLST 414
+ITGPN GK+ MK++G+ +S G ++PA+ H ++ D I+ + S+ +ST
Sbjct: 636 IITGPNACGKSVYMKSIGIMVFLSHIGSFVPAR-HAKIGIVDRIVTRMFTVDSVLDGMST 694
Query: 415 FSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR----DRVGLAVVT 470
F+ + ++ L + SLV+IDE G GT G++L S++ Y DR ++
Sbjct: 695 FAKDVEQVALALRKATGNSLVIIDEFGKGTMTEVGLSLLASVMTYWMNRGADRCPHIFLS 754
Query: 471 THYADLSCLKDKDTRFENAATEFSLETLRPT-------YRILWGSTGDSNALNIAKSIGF 523
+H+ L +T N AT + LR +R+ G S AL++AK G
Sbjct: 755 SHFHALPNYIPLET---NIATFLTFTVLREAGGKIKYLFRMTPGLVDCSFALSVAKEEGI 811
Query: 524 DRKIIQRAQKLVERLR 539
+I RA ++ + L+
Sbjct: 812 PPPVIGRACRIYKALK 827
Score = 54 (24.1 bits), Expect = 4.5e-11, Sum P(3) = 4.5e-11
Identities = 19/65 (29%), Positives = 30/65 (46%)
Query: 214 EFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDG 273
EF ++ +RL +S+ TAI+ L + K +R I L+ ID+ + A
Sbjct: 536 EFGDILMRLIDSQ----TAIILTLKTRVMKKKRSIIKLLSIASRIDVLISFGLIAAQNGW 591
Query: 274 VCPIL 278
CP L
Sbjct: 592 NCPAL 596
Score = 44 (20.5 bits), Expect = 4.5e-11, Sum P(3) = 4.5e-11
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 96 YSPLLELLKNCNFLTE-LEEKI--GFCIDCKLLIILDRASEDLELIR 139
Y +LLK N ++E LE + D K +I+ S+DLE I+
Sbjct: 80 YEQSSQLLKIMNDISEDLEFRFLKRLIDDVKPTLIIANRSQDLEFIK 126
>RGD|1303008 [details] [associations]
symbol:Msh5 "mutS homolog 5 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=ISO;IBA] [GO:0003674
"molecular_function" evidence=ND] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0007127 "meiosis I"
evidence=ISO] [GO:0007129 "synapsis" evidence=ISO] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0007292
"female gamete generation" evidence=IEA;ISO] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0008150
"biological_process" evidence=ND] [GO:0030983 "mismatched DNA
binding" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IRD] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007696 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 RGD:1303008 GO:GO:0005524 EMBL:BX883045
GO:GO:0006298 GO:GO:0030983 GO:GO:0007292 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 SUPFAM:SSF48334 KO:K08741 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 CTD:4439 HOVERGEN:HBG001449
OrthoDB:EOG4WSW8Z HOGENOM:HOG000006649 EMBL:BC083904
IPI:IPI00421996 RefSeq:NP_997701.2 UniGene:Rn.44043
ProteinModelPortal:Q6MG62 STRING:Q6MG62 PRIDE:Q6MG62
Ensembl:ENSRNOT00000060762 GeneID:294252 KEGG:rno:294252
UCSC:RGD:1303008 InParanoid:Q6MG62 NextBio:637830
Genevestigator:Q6MG62 GermOnline:ENSRNOG00000000857 Uniprot:Q6MG62
Length = 831
Score = 188 (71.2 bits), Expect = 5.3e-11, P = 5.3e-11
Identities = 63/229 (27%), Positives = 115/229 (50%)
Query: 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQN 411
RV VITGPN+ GK+ +K +GL + M+ G ++PA+ + D I I +S+
Sbjct: 583 RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGVIDAIFTRIHSCESISLG 641
Query: 412 LSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY---LRDRVGLAV 468
LSTF ++++ + + SLVLIDE G GT+ +G+AL T++L++ L
Sbjct: 642 LSTFMIDLNQVAKAVNNATEHSLVLIDEFGKGTNSVDGLALLTAVLRHWLALGPSCPHIF 701
Query: 469 VTTHYADLSCLKDKDTRFENAATEF-SLETLRPT------YRILWGSTGDSNALNIAKSI 521
V T++ L L+ + ++ ++ET Y++ G S+A A
Sbjct: 702 VATNFLSLVQLQLLP---QGPLVQYLTMETCEDGNDLVFFYQLCHGVASASHASYTAAQA 758
Query: 522 GFDRKIIQRAQKLVERLR---PERQQH---RKSELY--QSLMEERRKLE 562
G +I R +++ + +R P + H R++++ Q+L+++ KL+
Sbjct: 759 GLPDPLIARGKEVSDSIRSGKPVKPMHELVRRTQMENCQALVDKFLKLD 807
>TAIR|locus:1005716529 [details] [associations]
symbol:MSH7 "AT3G24495" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200 "ATP
catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000911 "cytokinesis by cell plate formation" evidence=RCA]
[GO:0006260 "DNA replication" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0007067 "mitosis" evidence=RCA] [GO:0007126
"meiosis" evidence=RCA] [GO:0007129 "synapsis" evidence=RCA]
[GO:0008283 "cell proliferation" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010389
"regulation of G2/M transition of mitotic cell cycle" evidence=RCA]
[GO:0010564 "regulation of cell cycle process" evidence=RCA]
[GO:0016458 "gene silencing" evidence=RCA] [GO:0034968 "histone
lysine methylation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0051726 "regulation of cell cycle"
evidence=RCA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009411 GO:GO:0003684 EMBL:AB020746
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
InterPro:IPR015536 PANTHER:PTHR11361:SF31 EMBL:AJ007792
EMBL:AF193018 EMBL:AF009657 IPI:IPI00538811 RefSeq:NP_850630.1
UniGene:At.6244 ProteinModelPortal:Q9SMV7 SMR:Q9SMV7 STRING:Q9SMV7
PaxDb:Q9SMV7 PRIDE:Q9SMV7 EnsemblPlants:AT3G24495.1 GeneID:822040
KEGG:ath:AT3G24495 GeneFarm:5083 TAIR:At3g24495
HOGENOM:HOG000030287 InParanoid:Q9SMV7 OMA:ELDEWRM PhylomeDB:Q9SMV7
ProtClustDB:CLSN2680110 Genevestigator:Q9SMV7 GermOnline:AT3G24495
Uniprot:Q9SMV7
Length = 1109
Score = 189 (71.6 bits), Expect = 6.1e-11, P = 6.1e-11
Identities = 58/223 (26%), Positives = 109/223 (48%)
Query: 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQN 411
R +++TGPN GGK+ ++ LA + ++ G Y+P ++ + D I +G +
Sbjct: 847 RSLLLTGPNMGGKSTLLRATCLAVIFAQLGCYVPCESC-EISLVDTIFTRLGASDRIMTG 905
Query: 412 LSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVV-T 470
STF + +L+ +++SLV++DE+G GT +G A+A S+ ++L ++V ++
Sbjct: 906 ESTFLVECTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYSVFRHLVEKVQCRMLFA 965
Query: 471 THYADLSCLKDKDTRF--ENAATEF-SLETLRPT---------YRILWGSTGDSNALNIA 518
THY L+ R ++ A F S +P YR+ G+ +S L +A
Sbjct: 966 THYHPLTKEFASHPRVTSKHMACAFKSRSDYQPRGCDQDLVFLYRLTEGACPESYGLQVA 1025
Query: 519 KSIGFDRKIIQRAQKLVERL-RPERQQHRKSEL---YQSLMEE 557
G ++++ A + + R + + SEL + SL E+
Sbjct: 1026 LMAGIPNQVVETASGAAQAMKRSIGENFKSSELRSEFSSLHED 1068
>MGI|MGI:1329021 [details] [associations]
symbol:Msh5 "mutS homolog 5 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000795 "synaptonemal complex" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0007126 "meiosis"
evidence=IEA] [GO:0007127 "meiosis I" evidence=IMP] [GO:0007129
"synapsis" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0007292 "female gamete generation"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0051026 "chiasma assembly" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
MGI:MGI:1329021 GO:GO:0005524 GO:GO:0005654 EMBL:AF109905
GO:GO:0006298 Reactome:REACT_120463 GO:GO:0030983 GO:GO:0007292
GO:GO:0007131 Reactome:REACT_27235 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
EMBL:AF397035 EMBL:AF397036 KO:K08741 GeneTree:ENSGT00550000074977
CTD:4439 HOVERGEN:HBG001449 OrthoDB:EOG4WSW8Z EMBL:AF146227
EMBL:AF107352 IPI:IPI00323518 RefSeq:NP_001139687.1
RefSeq:NP_038628.2 UniGene:Mm.24192 ProteinModelPortal:Q9QUM7
SMR:Q9QUM7 STRING:Q9QUM7 PhosphoSite:Q9QUM7 PRIDE:Q9QUM7
Ensembl:ENSMUST00000007250 Ensembl:ENSMUST00000097338 GeneID:17687
KEGG:mmu:17687 UCSC:uc008cfc.2 HOGENOM:HOG000006649
InParanoid:Q9QUM7 NextBio:292260 Bgee:Q9QUM7 CleanEx:MM_MSH5
Genevestigator:Q9QUM7 GermOnline:ENSMUSG00000007035 Uniprot:Q9QUM7
Length = 833
Score = 187 (70.9 bits), Expect = 6.8e-11, P = 6.8e-11
Identities = 61/218 (27%), Positives = 106/218 (48%)
Query: 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQN 411
RV VITGPN+ GK+ +K +GL + M+ G ++PA+ + D I I +S+
Sbjct: 585 RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGVIDAIFTRIHSCESISLG 643
Query: 412 LSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY---LRDRVGLAV 468
LSTF ++++ + + SLVLIDE G GT+ +G+AL ++L++ L
Sbjct: 644 LSTFMIDLNQVAKAVNNATEHSLVLIDEFGKGTNSVDGLALLAAVLRHWLALGPSCPHVF 703
Query: 469 VTTHYADLSCLK----DKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFD 524
V T++ L L+ ++ T E L Y++ G S+A + A G
Sbjct: 704 VATNFLSLVQLQLLPQGPLVQYLTMETCEDGEDLVFFYQLCQGVASASHASHTAAQAGLP 763
Query: 525 RKIIQRAQKLVERLRPERQQHRKSELYQ-SLMEERRKL 561
+I R +++ + +R + +EL + + ME + L
Sbjct: 764 DPLIARGKEVSDLIRSGKPIKATNELLRRNQMENCQAL 801
>CGD|CAL0005874 [details] [associations]
symbol:orf19.496 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032139 "dinucleotide insertion or
deletion binding" evidence=IEA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0043504 "mitochondrial DNA repair" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0005874 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:AACQ01000055 EMBL:AACQ01000054 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 HOGENOM:HOG000157750 SUPFAM:SSF53150
RefSeq:XP_717359.1 RefSeq:XP_717448.1 STRING:Q5A6Q9 GeneID:3640907
GeneID:3640972 KEGG:cal:CaO19.496 KEGG:cal:CaO19.8126
Uniprot:Q5A6Q9
Length = 923
Score = 188 (71.2 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 62/226 (27%), Positives = 110/226 (48%)
Query: 327 MTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPA 386
+ V S K + +P D K+ + + VI+GPN GGK+ ++ L ++++ G ++PA
Sbjct: 702 VVVESSLKDSGNMFIPNDSKMGTDGTLWVISGPNMGGKSTYLRQNALIVILAQIGSFVPA 761
Query: 387 KNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDP 446
+ + D I IG L +LSTF + + +IL + SL ++DEIG GT
Sbjct: 762 EK-ATIGLVDKIFTRIGATDDLFNDLSTFMVEMVEVSNILTNATPSSLAIVDEIGRGTSG 820
Query: 447 SEGVALA-TSILQYLRDRVGLAVVTTHYA-DLSCL------KDKDTRF------ENAATE 492
EG+A+A ++L L+ + TH+ +L L K+ R+ EN E
Sbjct: 821 KEGLAIAYATLLSLLQVNKCRTLFATHFGKELEQLLVANNIDQKNIRYFRTRVLENGDNE 880
Query: 493 FSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERL 538
+ + G + S+AL++A+ GF ++ A+K+++ L
Sbjct: 881 KGFVI---DHTLEPGISERSHALDVARMAGFPENALKAAEKVLDNL 923
Score = 47 (21.6 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 32/128 (25%), Positives = 49/128 (38%)
Query: 41 LSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLL 100
L + D L V G+ +++ TL + + L E E + L S L
Sbjct: 403 LQQLGDFIRNLQKLVVGRGDPVNQLVYAASTLDGLQKLRDFLVEEYEQNPKKL---SCLK 459
Query: 101 ELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLEL-IRAERKRNMENLDSLLKKVAAQ 159
LL+ + L EKI ID + I SE++E N +S L+K ++
Sbjct: 460 NLLEKFDIPKHLAEKIYNTIDIEEQTIPGEGSEEIEEPTEVVEDTNSSYTNSFLEKYRSK 519
Query: 160 IFQAGGID 167
Q G D
Sbjct: 520 --QEGNTD 525
Score = 42 (19.8 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 41/176 (23%), Positives = 76/176 (43%)
Query: 123 KLLIILDRASE-DLELIRAERK-RN-MENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMC 179
+L I+ D SE ++E + K RN ++++D L + +I + LIT + S +
Sbjct: 539 ELKILHDELSELEVEEHKLWSKLRNVLDDIDVKLN-IGKKIVLGRYNNVILITGKTSSIS 597
Query: 180 VGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNME-VRLSNSE--IAEETAILSL 236
KAS K DG L Y + E+N+++ + L E + E I+
Sbjct: 598 ---KASAKL---DGDILYEKKMSLVY-----RSTEWNDIQHLILDKKEAILLVERKIIEE 646
Query: 237 LTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINI 292
L +E+ + E + L +D+ + A A+ + CP L +S + ++
Sbjct: 647 LKSEVTRRFPEFRELAGLADFLDVTSSLAIVAEENNWTCPKLIKTPRLSVEGGRHV 702
>TIGR_CMR|APH_0857 [details] [associations]
symbol:APH_0857 "DNA mismatch repair protein MutS"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
RefSeq:YP_505434.1 STRING:Q2GJL7 GeneID:3930413 KEGG:aph:APH_0857
PATRIC:20950410 HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
BioCyc:APHA212042:GHPM-871-MONOMER PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 Uniprot:Q2GJL7
Length = 820
Score = 190 (71.9 bits), Expect = 1.7e-10, Sum P(3) = 1.7e-10
Identities = 50/197 (25%), Positives = 102/197 (51%)
Query: 355 VITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLST 414
+ITGPN GK+ ++ L ++++ G ++PA+ H + D I + +G ++ ST
Sbjct: 612 LITGPNMAGKSTFLRQNALIAVLAHIGSFVPAE-HAHIGVIDKIFSRVGASDNIALGHST 670
Query: 415 FSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRV-GLAVVTTHY 473
F + IL + +SLV++DEIG GT ++G+++A + ++++ D A+ THY
Sbjct: 671 FMVEMVETAAILNQATSKSLVILDEIGRGTAINDGLSIALAAIEHIHDVTKSRAICATHY 730
Query: 474 ADLSCLKD--KDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRA 531
+L L ++ RF E + + ++ G + S +++A GF + ++RA
Sbjct: 731 HELPKLSSHFENIRFFCLRIEEWKGEVVFLHELIPGISSRSYGIHVAGLAGFPKGALERA 790
Query: 532 QKLVERLRPERQQHRKS 548
+ + + + +H +S
Sbjct: 791 KFFMSKF--DEAEHYRS 805
Score = 46 (21.3 bits), Expect = 1.7e-10, Sum P(3) = 1.7e-10
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 214 EFNNMEVRL--SNSEIAE-ETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQW 270
E +E R+ + SE A+ E I L + IA ++I + V E+D+ A A
Sbjct: 508 ELKELEERIVSAQSESADLEAQIFKGLCSRIADECQDIGLAAEAVAELDVLTTLAEVAVE 567
Query: 271 MDGVCPIL 278
+ V PI+
Sbjct: 568 NNYVRPIV 575
Score = 37 (18.1 bits), Expect = 1.7e-10, Sum P(3) = 1.7e-10
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 182 IKASHKYLLPDGIALNVSSSGATYFMEPKGAV 213
++ S+ ++L DG AL +T E KG++
Sbjct: 261 VRDSNSFVLIDGPALRNLELFSTQSGEKKGSL 292
>TAIR|locus:2130913 [details] [associations]
symbol:MSH4 "AT4G17380" species:3702 "Arabidopsis
thaliana" [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200
"ATP catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000794 "condensed nuclear chromosome" evidence=IDA]
[GO:0007129 "synapsis" evidence=RCA;IMP] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0006302 "double-strand break repair"
evidence=RCA] [GO:0006312 "mitotic recombination" evidence=RCA]
[GO:0007059 "chromosome segregation" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007067 "mitosis"
evidence=RCA] [GO:0007126 "meiosis" evidence=RCA] [GO:0010332
"response to gamma radiation" evidence=RCA] [GO:0010564 "regulation
of cell cycle process" evidence=RCA] [GO:0032204 "regulation of
telomere maintenance" evidence=RCA] [GO:0032504 "multicellular
organism reproduction" evidence=RCA] [GO:0042138 "meiotic DNA
double-strand break formation" evidence=RCA] [GO:0043247 "telomere
maintenance in response to DNA damage" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 SMART:SM00533 SMART:SM00534 GO:GO:0009506
GO:GO:0005524 EMBL:CP002687 GO:GO:0003684 EMBL:Z97343 GO:GO:0030983
GO:GO:0008094 GO:GO:0051026 EMBL:AL161546 GO:GO:0045143
GO:GO:0043073 GO:GO:0000795 GO:GO:0007128 KO:K08740 OMA:GFFIQMT
SUPFAM:SSF48334 GO:GO:0032300 EMBL:AY646927 IPI:IPI00525244
IPI:IPI00538174 PIR:B71443 RefSeq:NP_193469.2 UniGene:At.24376
UniGene:At.71316 ProteinModelPortal:F4JP48 SMR:F4JP48 IntAct:F4JP48
EnsemblPlants:AT4G17380.1 GeneID:827450 KEGG:ath:AT4G17380
TAIR:At4g17380 GO:GO:0010777 Uniprot:F4JP48
Length = 792
Score = 183 (69.5 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 44/141 (31%), Positives = 75/141 (53%)
Query: 337 SDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFD 396
+DF V I + T ++V+ GPN GK+ ++ + L ++++ G Y+PA+ + D
Sbjct: 533 NDF-VSNSIFMSEATNMLVVMGPNMSGKSTYLQQVCLVVILAQIGCYVPAR-FATIRVVD 590
Query: 397 LILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSI 456
I +G +LE N STF + I++ V+ SL+++DE+G T S+G+A+A S
Sbjct: 591 RIFTRMGTMDNLESNSSTFMTEMRETAFIMQNVTNRSLIVMDELGRATSSSDGLAMAWSC 650
Query: 457 LQYLRDRVGLAVVTTHYADLS 477
+YL V TH L+
Sbjct: 651 CEYLLSLKAYTVFATHMDSLA 671
>UNIPROTKB|A4R0R0 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein MSH3"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0005634
GO:GO:0006298 EMBL:CM001231 GO:GO:0030983 eggNOG:COG0249
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 KO:K08736
OrthoDB:EOG42NN7M RefSeq:XP_003709956.1 STRING:A4R0R0
EnsemblFungi:MGG_09306T0 GeneID:2680221 KEGG:mgr:MGG_09306
Uniprot:A4R0R0
Length = 1151
Score = 185 (70.2 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 43/124 (34%), Positives = 70/124 (56%)
Query: 355 VITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLST 414
++TGPN GGK++ ++ L L L+++ G ++PA + RL D I +G +L ST
Sbjct: 910 LVTGPNMGGKSSFVRALALLVLLAQVGSFVPADSL-RLTLSDAIYTRMGASDNLFAGEST 968
Query: 415 FSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL-RDRVGLAVVTTHY 473
F + IL + SLVL+DE+G GT +G A+A ++L ++ R+ L + THY
Sbjct: 969 FMVEVGETAAILRTATPRSLVLLDELGRGTSTHDGAAIAHAVLDHVVRNTRCLTLFITHY 1028
Query: 474 ADLS 477
L+
Sbjct: 1029 QSLA 1032
>UNIPROTKB|A2BEX4 [details] [associations]
symbol:MSH5-SAPCD1 "MutS protein homolog 5" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:BX248244 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
EMBL:CR759915 UniGene:Hs.647011 HGNC:HGNC:7328 HOVERGEN:HBG001449
ChiTaRS:MSH5 EMBL:BX248133 SMR:A2BEX4 Ensembl:ENST00000414514
Ensembl:ENST00000414810 Ensembl:ENST00000437726
Ensembl:ENST00000454820 Ensembl:ENST00000466318
Ensembl:ENST00000495073 HGNC:HGNC:41994 Uniprot:A2BEX4
Length = 496
Score = 184 (69.8 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 61/229 (26%), Positives = 116/229 (50%)
Query: 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQN 411
RV VITGPN+ GK+ +K +GL + M+ G ++PA+ + D I I +S+
Sbjct: 248 RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESISLG 306
Query: 412 LSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLA---V 468
LSTF ++++ + + +SLVLIDE G GT+ +G+AL ++L++ R
Sbjct: 307 LSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIF 366
Query: 469 VTTHYADLSCLKDKDTRFENAATEF-SLETLRPT------YRILWGSTGDSNALNIAKSI 521
V T++ L L+ + ++ ++ET Y++ G S+A + A
Sbjct: 367 VATNFLSLVQLQLLP---QGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQA 423
Query: 522 GFDRKIIQRAQKLVERLR------PERQQHRKSELY--QSLMEERRKLE 562
G K++ R +++ + +R P + +K+++ Q+L+++ KL+
Sbjct: 424 GLPDKLVARGKEVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLD 472
Score = 39 (18.8 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 22/80 (27%), Positives = 35/80 (43%)
Query: 20 SQKLLNQTSAALAMMQSQPLDLST-IEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNV 78
S++ L+ SA + + DL I D +L + Q+L+ + + L + +V
Sbjct: 134 SEEKLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDV 193
Query: 79 WKKLTEAAELDGDSLQRYSP 98
L AA G S RYSP
Sbjct: 194 LLALASAARDYGYSRPRYSP 213
>UNIPROTKB|A2ABF0 [details] [associations]
symbol:MSH5 "cDNA FLJ39914 fis, clone SPLEN2018732, highly
similar to MutS protein homolog 5" species:9606 "Homo sapiens"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:AL662899 EMBL:BX248244 EMBL:CR759787 GO:GO:0006298
GO:GO:0030983 EMBL:AL662834 EMBL:CR936239 SUPFAM:SSF48334
EMBL:CR759915 EMBL:CR925765 UniGene:Hs.647011 HGNC:HGNC:7328
HOVERGEN:HBG001449 ChiTaRS:MSH5 EMBL:BX248133 EMBL:AK097233
IPI:IPI00798222 SMR:A2ABF0 STRING:A2ABF0 Ensembl:ENST00000395853
Ensembl:ENST00000414412 Ensembl:ENST00000430216
Ensembl:ENST00000436004 Ensembl:ENST00000439816
Ensembl:ENST00000448169 HOGENOM:HOG000231215 Uniprot:A2ABF0
Length = 508
Score = 184 (69.8 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 61/229 (26%), Positives = 116/229 (50%)
Query: 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQN 411
RV VITGPN+ GK+ +K +GL + M+ G ++PA+ + D I I +S+
Sbjct: 260 RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESISLG 318
Query: 412 LSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLA---V 468
LSTF ++++ + + +SLVLIDE G GT+ +G+AL ++L++ R
Sbjct: 319 LSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIF 378
Query: 469 VTTHYADLSCLKDKDTRFENAATEF-SLETLRPT------YRILWGSTGDSNALNIAKSI 521
V T++ L L+ + ++ ++ET Y++ G S+A + A
Sbjct: 379 VATNFLSLVQLQLLP---QGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQA 435
Query: 522 GFDRKIIQRAQKLVERLR------PERQQHRKSELY--QSLMEERRKLE 562
G K++ R +++ + +R P + +K+++ Q+L+++ KL+
Sbjct: 436 GLPDKLVARGKEVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLD 484
Score = 39 (18.8 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 22/80 (27%), Positives = 35/80 (43%)
Query: 20 SQKLLNQTSAALAMMQSQPLDLST-IEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNV 78
S++ L+ SA + + DL I D +L + Q+L+ + + L + +V
Sbjct: 146 SEEKLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDV 205
Query: 79 WKKLTEAAELDGDSLQRYSP 98
L AA G S RYSP
Sbjct: 206 LLALASAARDYGYSRPRYSP 225
>UNIPROTKB|B4DZX3 [details] [associations]
symbol:MSH5 "cDNA FLJ54211, highly similar to MutS protein
homolog 5" species:9606 "Homo sapiens" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AL662899
EMBL:CR759787 GO:GO:0006298 GO:GO:0030983 EMBL:AL662834
EMBL:CR936239 SUPFAM:SSF48334 EMBL:CR925765 UniGene:Hs.647011
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 EMBL:AK303129
IPI:IPI01015677 SMR:B4DZX3 STRING:B4DZX3 Ensembl:ENST00000431848
Ensembl:ENST00000547775 Ensembl:ENST00000549618
Ensembl:ENST00000551879 Uniprot:B4DZX3
Length = 533
Score = 184 (69.8 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 61/229 (26%), Positives = 116/229 (50%)
Query: 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQN 411
RV VITGPN+ GK+ +K +GL + M+ G ++PA+ + D I I +S+
Sbjct: 285 RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESISLG 343
Query: 412 LSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLA---V 468
LSTF ++++ + + +SLVLIDE G GT+ +G+AL ++L++ R
Sbjct: 344 LSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIF 403
Query: 469 VTTHYADLSCLKDKDTRFENAATEF-SLETLRPT------YRILWGSTGDSNALNIAKSI 521
V T++ L L+ + ++ ++ET Y++ G S+A + A
Sbjct: 404 VATNFLSLVQLQLLP---QGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQA 460
Query: 522 GFDRKIIQRAQKLVERLR------PERQQHRKSELY--QSLMEERRKLE 562
G K++ R +++ + +R P + +K+++ Q+L+++ KL+
Sbjct: 461 GLPDKLVARGKEVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLD 509
Score = 39 (18.8 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 22/80 (27%), Positives = 35/80 (43%)
Query: 20 SQKLLNQTSAALAMMQSQPLDLST-IEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNV 78
S++ L+ SA + + DL I D +L + Q+L+ + + L + +V
Sbjct: 171 SEEKLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDV 230
Query: 79 WKKLTEAAELDGDSLQRYSP 98
L AA G S RYSP
Sbjct: 231 LLALASAARDYGYSRPRYSP 250
>UNIPROTKB|A3KGM9 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 IPI:IPI00790547
SMR:A3KGM9 Ensembl:ENST00000412975 UCSC:uc011iro.1 Uniprot:A3KGM9
Length = 401
Score = 179 (68.1 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 39/108 (36%), Positives = 65/108 (60%)
Query: 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQN 411
RV VITGPN+ GK+ +K +GL + M+ G ++PA+ + D I I +S+
Sbjct: 260 RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESISLG 318
Query: 412 LSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
LSTF ++++ + + +SLVLIDE G GT+ +G+AL ++L++
Sbjct: 319 LSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRH 366
Score = 39 (18.8 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 22/80 (27%), Positives = 35/80 (43%)
Query: 20 SQKLLNQTSAALAMMQSQPLDLST-IEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNV 78
S++ L+ SA + + DL I D +L + Q+L+ + + L + +V
Sbjct: 146 SEEKLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDV 205
Query: 79 WKKLTEAAELDGDSLQRYSP 98
L AA G S RYSP
Sbjct: 206 LLALASAARDYGYSRPRYSP 225
>UNIPROTKB|E1B8D2 [details] [associations]
symbol:MSH5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007129 "synapsis" evidence=IEA] [GO:0000795 "synaptonemal
complex" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007292
GO:GO:0007129 GO:GO:0000795 SUPFAM:SSF48334 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 EMBL:DAAA02055381 IPI:IPI00710632
Ensembl:ENSBTAT00000026367 Uniprot:E1B8D2
Length = 831
Score = 186 (70.5 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 60/226 (26%), Positives = 113/226 (50%)
Query: 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQN 411
RV VITGPN+ GK+ +K +GL + M+ G ++PA+ + D I I +S+
Sbjct: 583 RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESISLG 641
Query: 412 LSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY---LRDRVGLAV 468
LSTF ++++ + + SLVL+DE G GT+ +G+AL +++++ L
Sbjct: 642 LSTFMIDLNQVAKAVNNATERSLVLVDEFGKGTNTVDGLALLAAVIRHWLALGPTCPHVF 701
Query: 469 VTTHYADLSCL----KDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFD 524
V T++ L L + ++ T + L Y++ G S+A + A G
Sbjct: 702 VATNFLSLVQLQLLPRGPLVQYLTMETCEDGDDLVFFYQVCEGVARASHASHTAAQAGLP 761
Query: 525 RKIIQRAQKLVERLR------PERQ--QHRKSELYQSLMEERRKLE 562
K+I R +++ + +R P ++ + ++ E Q+L+++ KL+
Sbjct: 762 EKLIARGKQVSDLIRSGKPIKPVKELLKEKQMENCQTLVDKFLKLD 807
Score = 42 (19.8 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 23/82 (28%), Positives = 36/82 (43%)
Query: 20 SQKLLNQTSAALAMMQSQPLDLST-IEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNV 78
S++ L+ SA + + DL I D +L + Q+L+ + + L + +V
Sbjct: 469 SEEKLHYRSARTKELDALLGDLHCDIRDQETLLMHQLQCQVLARAAVLTRVLDLASRLDV 528
Query: 79 WKKLTEAAELDGDSLQRYSPLL 100
L AA G S RYSP L
Sbjct: 529 LLALASAARDYGYSRPRYSPRL 550
>UNIPROTKB|B0V0L9 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334 EMBL:CR759915
UniGene:Hs.647011 HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5
SMR:B0V0L9 Ensembl:ENST00000458424 Uniprot:B0V0L9
Length = 466
Score = 179 (68.1 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
Identities = 39/108 (36%), Positives = 65/108 (60%)
Query: 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQN 411
RV VITGPN+ GK+ +K +GL + M+ G ++PA+ + D I I +S+
Sbjct: 248 RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESISLG 306
Query: 412 LSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
LSTF ++++ + + +SLVLIDE G GT+ +G+AL ++L++
Sbjct: 307 LSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRH 354
Score = 39 (18.8 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
Identities = 22/80 (27%), Positives = 35/80 (43%)
Query: 20 SQKLLNQTSAALAMMQSQPLDLST-IEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNV 78
S++ L+ SA + + DL I D +L + Q+L+ + + L + +V
Sbjct: 134 SEEKLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDV 193
Query: 79 WKKLTEAAELDGDSLQRYSP 98
L AA G S RYSP
Sbjct: 194 LLALASAARDYGYSRPRYSP 213
>TAIR|locus:2092404 [details] [associations]
symbol:MSH5 "AT3G20475" species:3702 "Arabidopsis
thaliana" [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200
"ATP catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0000794 "condensed nuclear chromosome"
evidence=IDA] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IMP] [GO:0051026 "chiasma assembly" evidence=IMP]
[GO:0006302 "double-strand break repair" evidence=RCA] [GO:0006312
"mitotic recombination" evidence=RCA] [GO:0007059 "chromosome
segregation" evidence=RCA] [GO:0007062 "sister chromatid cohesion"
evidence=RCA] [GO:0007129 "synapsis" evidence=RCA] [GO:0009691
"cytokinin biosynthetic process" evidence=RCA] [GO:0010332
"response to gamma radiation" evidence=RCA] [GO:0032204 "regulation
of telomere maintenance" evidence=RCA] [GO:0032504 "multicellular
organism reproduction" evidence=RCA] [GO:0042138 "meiotic DNA
double-strand break formation" evidence=RCA] [GO:0043247 "telomere
maintenance in response to DNA damage" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002686
GO:GO:0003684 GO:GO:0030983 GO:GO:0008094 GO:GO:0051026
EMBL:AB024036 GO:GO:0045143 GO:GO:0043073 GO:GO:0000795
SUPFAM:SSF48334 GO:GO:0032300 GO:GO:0010777 EMBL:EF471448
EMBL:AK221687 EMBL:AK230222 EMBL:BT012280 IPI:IPI00532145
RefSeq:NP_188683.3 UniGene:At.50208 ProteinModelPortal:F4JEP5
SMR:F4JEP5 EnsemblPlants:AT3G20475.1 GeneID:821593
KEGG:ath:AT3G20475 TAIR:At3g20475 KO:K08741 OMA:NDLVFFY
Uniprot:F4JEP5
Length = 807
Score = 176 (67.0 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 118/541 (21%), Positives = 232/541 (42%)
Query: 17 LEESQKLLNQTS---AALAMMQSQPLDLSTIEDIAGIL---NSAVSGQLLSPSEICAVRR 70
LE + LN S +++ +M S L +++DI+ +L NS S L + ++ A +
Sbjct: 243 LEVLDRRLNAISFFISSVELMASLRETLKSVKDISHLLKKFNSPTS--LCTSNDWTAFLK 300
Query: 71 TLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDR 130
++ A+ +V K+ E +SL+ + ++ N ++ EK G CI +L + +
Sbjct: 301 SISALLHV-NKIFEVGV--SESLREH------MRRFNL--DIIEKAGLCISTELDYVYEL 349
Query: 131 ASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGI--DKPLITKRRSRMCVG-IKASHK 187
+++ R+ ++R + L + + A++ + I + P + S M + HK
Sbjct: 350 VIGVIDVTRS-KERGYQTL--VKEGFCAELDELRQIYEELPEFLQEVSAMELEHFPHLHK 406
Query: 188 YLLPDGIALNVSSSG--ATYFMEPKGAVEFNNM-EVRLSNSEIAEETAILSLLTAEIAKS 244
LP I + G F E N + E + S++ ET T++ +
Sbjct: 407 EKLPPCIVY-IQQIGYLMCIFGEKLDETALNRLTEFEFAFSDMDGETQRFFYHTSKTREL 465
Query: 245 EREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVS-FDSSINIEGIKHXXXXXX 303
+ + + ++L+++ A R + + +L + + V+ D +++ + H
Sbjct: 466 DNLLGDIYHKILDMERAIIRDLLSHTLLFSAHLLKAVNFVAELDCILSLACVAHQNNYVR 525
Query: 304 XXXXXXXXXXXXXXXXXDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGG 363
D+ N + ++ + F +P D ++ R+ +ITGPN G
Sbjct: 526 PVLTVESLL--------DIRNGRHVLQEMA--VDTF-IPNDTEINDNGRIHIITGPNYSG 574
Query: 364 KTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDH-QSLEQNLSTFSGHISRI 422
K+ +K + L +S G ++PA + + D I +G + EQ STF + ++
Sbjct: 575 KSIYVKQVALIVFLSHIGSFVPA-DAATVGLTDRIFCAMGSKFMTAEQ--STFMIDLHQV 631
Query: 423 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD--RVGLAVVTTHYADL---S 477
+L + SL L+DE G GT +G+ L + + VV TH +L S
Sbjct: 632 GMMLRQATSRSLCLLDEFGKGTLTEDGIGLLGGTISHFATCAEPPRVVVCTHLTELLNES 691
Query: 478 CLK-DKDTRFENAA-----TEFS-LETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQR 530
CL + +F + TE + +E + YR++ G T S L+ A G ++++R
Sbjct: 692 CLPVSEKIKFYTMSVLRPDTESANMEEIVFLYRLIPGQTLLSYGLHCALLAGVPEEVVKR 751
Query: 531 A 531
A
Sbjct: 752 A 752
>UNIPROTKB|O43196 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IRD] [GO:0045143
"homologous chromosome segregation" evidence=IBA] [GO:0051026
"chiasma assembly" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=TAS] [GO:0007136 "meiotic prophase II" evidence=TAS]
[GO:0007126 "meiosis" evidence=TAS] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 EMBL:BA000025 EMBL:CH471081 EMBL:AF129756
EMBL:AL662899 EMBL:CR759787 GO:GO:0006298 Reactome:REACT_111183
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
EMBL:AL662834 GO:GO:0045143 EMBL:AF134726 EMBL:CR936239
GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334 EMBL:CR925765
KO:K08741 OMA:NDLVFFY EMBL:AF048986 EMBL:AF048991 EMBL:AF048988
EMBL:AF048989 EMBL:AF048990 EMBL:AF034759 EMBL:AF070071
EMBL:AF070079 EMBL:AF070072 EMBL:AF070073 EMBL:AF070074
EMBL:AF070075 EMBL:AF070076 EMBL:AF070077 EMBL:AF070078
EMBL:BT007200 EMBL:AY943816 EMBL:BC001358 EMBL:BC002498
EMBL:BC041031 IPI:IPI00172593 IPI:IPI00219362 IPI:IPI00297780
IPI:IPI00647584 RefSeq:NP_002432.1 RefSeq:NP_079535.4
RefSeq:NP_751897.1 RefSeq:NP_751898.1 UniGene:Hs.647011
ProteinModelPortal:O43196 SMR:O43196 IntAct:O43196 STRING:O43196
PhosphoSite:O43196 PRIDE:O43196 DNASU:4439 Ensembl:ENST00000375703
Ensembl:ENST00000375740 Ensembl:ENST00000375742
Ensembl:ENST00000375750 Ensembl:ENST00000375755
Ensembl:ENST00000416549 Ensembl:ENST00000419269
Ensembl:ENST00000427735 Ensembl:ENST00000435700
Ensembl:ENST00000436192 Ensembl:ENST00000441395
Ensembl:ENST00000441401 Ensembl:ENST00000448617
Ensembl:ENST00000456839 Ensembl:ENST00000457742
Ensembl:ENST00000497157 Ensembl:ENST00000534153
Ensembl:ENST00000578225 GeneID:4439 KEGG:hsa:4439 UCSC:uc003nwu.2
UCSC:uc003nwv.2 UCSC:uc003nwx.2 CTD:4439 GeneCards:GC06P031707
H-InvDB:HIX0165917 H-InvDB:HIX0166738 H-InvDB:HIX0167237
H-InvDB:HIX0167372 HGNC:HGNC:7328 MIM:603382 neXtProt:NX_O43196
PharmGKB:PA31136 HOVERGEN:HBG001449 OrthoDB:EOG4WSW8Z
PhylomeDB:O43196 ChiTaRS:MSH5 GenomeRNAi:4439 NextBio:17301
ArrayExpress:O43196 Bgee:O43196 CleanEx:HS_MSH5
Genevestigator:O43196 GermOnline:ENSG00000204410 GO:GO:0007136
Uniprot:O43196
Length = 834
Score = 184 (69.8 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 61/229 (26%), Positives = 116/229 (50%)
Query: 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQN 411
RV VITGPN+ GK+ +K +GL + M+ G ++PA+ + D I I +S+
Sbjct: 586 RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESISLG 644
Query: 412 LSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLA---V 468
LSTF ++++ + + +SLVLIDE G GT+ +G+AL ++L++ R
Sbjct: 645 LSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIF 704
Query: 469 VTTHYADLSCLKDKDTRFENAATEF-SLETLRPT------YRILWGSTGDSNALNIAKSI 521
V T++ L L+ + ++ ++ET Y++ G S+A + A
Sbjct: 705 VATNFLSLVQLQLLP---QGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQA 761
Query: 522 GFDRKIIQRAQKLVERLR------PERQQHRKSELY--QSLMEERRKLE 562
G K++ R +++ + +R P + +K+++ Q+L+++ KL+
Sbjct: 762 GLPDKLVARGKEVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLD 810
Score = 39 (18.8 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 22/80 (27%), Positives = 35/80 (43%)
Query: 20 SQKLLNQTSAALAMMQSQPLDLST-IEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNV 78
S++ L+ SA + + DL I D +L + Q+L+ + + L + +V
Sbjct: 472 SEEKLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDV 531
Query: 79 WKKLTEAAELDGDSLQRYSP 98
L AA G S RYSP
Sbjct: 532 LLALASAARDYGYSRPRYSP 551
>TAIR|locus:2095097 [details] [associations]
symbol:MSH2 "AT3G18524" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=ISS;IDA] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006200 "ATP catabolic
process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS;IMP] [GO:0006301 "postreplication repair"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IEA;IBA]
[GO:0032302 "MutSbeta complex" evidence=IEA;IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0005515
"protein binding" evidence=IPI] [GO:0030983 "mismatched DNA
binding" evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IMP] [GO:0006290 "pyrimidine dimer repair"
evidence=IMP] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0008283 "cell proliferation"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016570 "histone modification" evidence=RCA] [GO:0031047 "gene
silencing by RNA" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0031507 "heterochromatin assembly"
evidence=RCA] [GO:0045787 "positive regulation of cell cycle"
evidence=RCA] [GO:0048449 "floral organ formation" evidence=RCA]
[GO:0048451 "petal formation" evidence=RCA] [GO:0048453 "sepal
formation" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] [GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005886 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003684 EMBL:AB026658 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 EMBL:AP001303
GO:GO:0008094 GO:GO:0006290 GO:GO:0006311 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 EMBL:AF026549 EMBL:AF109243
EMBL:AF002706 EMBL:AF003005 EMBL:U87911 IPI:IPI00526204
RefSeq:NP_566804.3 UniGene:At.10475 ProteinModelPortal:O24617
SMR:O24617 STRING:O24617 PaxDb:O24617 PRIDE:O24617
EnsemblPlants:AT3G18524.1 GeneID:821383 KEGG:ath:AT3G18524
TAIR:At3g18524 HOGENOM:HOG000196498 InParanoid:O24617 KO:K08735
OMA:WAISEHI PhylomeDB:O24617 ProtClustDB:CLSN2680872
Genevestigator:O24617 GermOnline:AT3G18524 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 Uniprot:O24617
Length = 937
Score = 176 (67.0 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 48/196 (24%), Positives = 97/196 (49%)
Query: 355 VITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLST 414
++TGPN GGK+ ++ +G+ LM++ G ++P + + D I A +G + +ST
Sbjct: 663 IVTGPNMGGKSTFIRQVGVIVLMAQVGSFVPC-DKASISIRDCIFARVGAGDCQLRGVST 721
Query: 415 FSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL-RDRVGLAVVTTHY 473
F + IL+ S +SL++IDE+G GT +G LA +I ++L + + + TH+
Sbjct: 722 FMQEMLETASILKGASDKSLIIIDELGRGTSTYDGFGLAWAICEHLVQVKRAPTLFATHF 781
Query: 474 ADLSCLKDKDTRFE---------NAATEFSLETLRPT--YRILWGSTGDSNALNIAKSIG 522
+L+ L ++ + + E+ + T Y++ G+ S +++A+
Sbjct: 782 HELTALAQANSEVSGNTVGVANFHVSAHIDTESRKLTMLYKVEPGACDQSFGIHVAEFAN 841
Query: 523 FDRKIIQRAQKLVERL 538
F ++ A++ L
Sbjct: 842 FPESVVALAREKAAEL 857
>ZFIN|ZDB-GENE-060526-307 [details] [associations]
symbol:msh3 "mutS homolog 3 (E. coli)" species:7955
"Danio rerio" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534
ZFIN:ZDB-GENE-060526-307 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 GeneTree:ENSGT00550000074949
EMBL:CR381619 IPI:IPI00805026 Ensembl:ENSDART00000092285
Uniprot:F1QCN5
Length = 950
Score = 176 (67.0 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 39/124 (31%), Positives = 71/124 (57%)
Query: 335 GISDFPVPIDIKVECE-TRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP 393
G D VP D ++ + R ++ITGPN GGK++ ++ + L ++M++ G ++PA+ +
Sbjct: 828 GDQDQYVPNDTHLQGDGKRAMIITGPNMGGKSSYIRQVALVTIMAQLGSFVPARE-ASVG 886
Query: 394 WFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALA 453
D I +G ++ + STF + D+L + SLV++DE+G GT +G+A+A
Sbjct: 887 IVDGIYVRMGASDNISRGRSTFMEELLETSDVLACATSRSLVILDELGRGTSTHDGIAIA 946
Query: 454 TSIL 457
+ L
Sbjct: 947 YATL 950
>SGD|S000001162 [details] [associations]
symbol:MSH1 "DNA-binding protein involved in repair of
mitochondrial DNA" species:4932 "Saccharomyces cerevisiae"
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IMP] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0043570
"maintenance of DNA repeat elements" evidence=IRD] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0043504 "mitochondrial DNA
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA;IMP]
[GO:0032137 "guanine/thymine mispair binding" evidence=IDA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IDA] [GO:0000002 "mitochondrial genome maintenance"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IMP] [GO:0003684 "damaged DNA binding" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000001162 GO:GO:0005739 GO:GO:0005524
GO:GO:0003684 EMBL:BK006934 GO:GO:0006298 EMBL:U00059 GO:GO:0008094
GO:GO:0043504 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150 EMBL:M84169
PIR:S48962 RefSeq:NP_011988.1 ProteinModelPortal:P25846 SMR:P25846
DIP:DIP-6433N IntAct:P25846 MINT:MINT-683422 STRING:P25846
PaxDb:P25846 EnsemblFungi:YHR120W GeneID:856520 KEGG:sce:YHR120W
CYGD:YHR120w OMA:KERLLNP NextBio:982278 Genevestigator:P25846
GermOnline:YHR120W GO:GO:0032300 GO:GO:0032139 Uniprot:P25846
Length = 959
Score = 182 (69.1 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 48/192 (25%), Positives = 95/192 (49%)
Query: 355 VITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLST 414
VITGPN GGK+ ++ + ++++ G ++P R+ D + + +G L +ST
Sbjct: 768 VITGPNMGGKSTFLRQNAIIVILAQIGCFVPCSK-ARVGIVDKLFSRVGSADDLYNEMST 826
Query: 415 FSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVV-TTHY 473
F + IL+ + SL ++DEIG GT EG+++A + L+YL + + TH+
Sbjct: 827 FMVEMIETSFILQGATERSLAILDEIGRGTSGKEGISIAYATLKYLLENNQCRTLFATHF 886
Query: 474 A-------DLSCLK---DKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGF 523
D C K +K +++ T+ +++ G S+A+ +A+ GF
Sbjct: 887 GQELKQIIDNKCSKGMSEKVKFYQSGITDLGGNNFCYNHKLKPGICTKSDAIRVAELAGF 946
Query: 524 DRKIIQRAQKLV 535
+ ++ A++++
Sbjct: 947 PMEALKEAREIL 958
Score = 43 (20.2 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 15/59 (25%), Positives = 26/59 (44%)
Query: 219 EVRLSNSEIAEETA-ILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCP 276
E+ L N +I E A I+ L + E++ + + +D + A A + VCP
Sbjct: 666 ELELLNLKIRNEEANIIDLFKRKFIDRSNEVRQVATTLGYLDTLSSFAVLANERNLVCP 724
Score = 42 (19.8 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 11 IPFGKSLEESQK----LLNQTSAALAMMQSQPLDLS 42
I +SLE S++ LLN TS A ++SQ L+
Sbjct: 466 IQMARSLEVSREIRKYLLNNTSLMKATLKSQITQLT 501
Score = 42 (19.8 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 20/82 (24%), Positives = 37/82 (45%)
Query: 13 FGKSL-EESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQ---------LLSP 62
F K+L ++ K LN+ A + Q D++ + DI + + S + +++P
Sbjct: 506 FEKNLIDDILKFLNEEELAKSQDAKQNADVTRMLDI-DVKDKKESNKDEIFELRDFIVNP 564
Query: 63 SEICAVRRTLRAVNNVWKKLTE 84
S +R+ VW+K TE
Sbjct: 565 SFNTKLRKLHDTYQGVWQKKTE 586
Score = 41 (19.5 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 17/53 (32%), Positives = 22/53 (41%)
Query: 35 QSQPLDLSTIEDIAGILN----SAVSGQL------LSPSEICAVRRTLRAVNN 77
Q P TIE G+ N A QL + E+ A+R TL V+N
Sbjct: 290 QKMPSQHRTIESFYGLFNLGGKEATERQLKIQFQTFTQKELAALRNTLIYVSN 342
>UNIPROTKB|J9NUN0 [details] [associations]
symbol:MSH5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074977 EMBL:AAEX03008217 EMBL:AAEX03008216
Ensembl:ENSCAFT00000043640 Uniprot:J9NUN0
Length = 725
Score = 182 (69.1 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 39/108 (36%), Positives = 66/108 (61%)
Query: 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQN 411
RV VITGPN+ GK+ +K +GL + M+ G ++PA+ + D I I +S+
Sbjct: 477 RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESISLG 535
Query: 412 LSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
LSTF ++++ + +++SLVLIDE G GT+ +G+AL ++L++
Sbjct: 536 LSTFMIDLNQVAKAVNNATKQSLVLIDEFGKGTNTVDGLALLAAVLRH 583
Score = 38 (18.4 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 23/82 (28%), Positives = 35/82 (42%)
Query: 20 SQKLLNQTSAALAMMQSQPLDLST-IEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNV 78
S+ L+ SA + + DL I D +L + Q+L+ + + L + +V
Sbjct: 363 SEGKLHYRSARTKELDALLGDLHCDIRDQETLLMHQLQCQVLARAAVFTRVLDLASRLDV 422
Query: 79 WKKLTEAAELDGDSLQRYSPLL 100
L AA G S RYSP L
Sbjct: 423 LLALASAARDYGYSRPRYSPQL 444
>DICTYBASE|DDB_G0284747 [details] [associations]
symbol:msh5 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0007131 "reciprocal
meiotic recombination" evidence=ISS;IBA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0032300
"mismatch repair complex" evidence=IRD] [GO:0003684 "damaged DNA
binding" evidence=IRD] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 Pfam:PF00488 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0284747
GO:GO:0005524 GenomeReviews:CM000153_GR EMBL:AAFI02000071
GO:GO:0006298 GO:GO:0030983 GO:GO:0007131 GO:GO:0008094
GO:GO:0051026 GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249
SUPFAM:SSF48334 SUPFAM:SSF53150 KO:K08741 RefSeq:XP_638383.1
EnsemblProtists:DDB0231220 GeneID:8624752 KEGG:ddi:DDB_G0284747
InParanoid:Q54P75 OMA:FAAELDC ProtClustDB:CLSZ2728934
Uniprot:Q54P75
Length = 880
Score = 169 (64.5 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 47/170 (27%), Positives = 84/170 (49%)
Query: 336 ISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWF 395
+++F +P D + + VV+++GPN GK+ +K + L + + G Y+PAK+ + F
Sbjct: 575 VTNF-IPNDTQNDPTKPVVIVSGPNQSGKSIYIKQVALIVFLGQIGSYVPAKS-ATISLF 632
Query: 396 DLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATS 455
D I I +S + S+F +I + + SL++IDE G GT+P +G++L
Sbjct: 633 DHIYTRISSRESNAISESSFMIDCKQIAQMTRFATSRSLLIIDEYGKGTNPLDGISLLYG 692
Query: 456 ILQYLRDR---VGLAVVTTHYADLSCL--KDKDTRFENA---ATEFSLET 497
+L +L + + TH+ + L D+ F EF +ET
Sbjct: 693 LLVFLLTKSPSTPKTFICTHFYEFFELISNSTDSIFNKVLFNTMEFVIET 742
Score = 49 (22.3 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 481 DKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVE 536
+K T N EF P Y++ G + S + AK G + ++ RA ++++
Sbjct: 776 NKITNTNNKPNEFI-----PFYKLKEGISSSSFGILCAKIAGVNENVVNRAYEIMD 826
Score = 47 (21.6 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 25/116 (21%), Positives = 49/116 (42%)
Query: 178 MCVGIKAS----HKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAI 233
+C+ I+ S ++ +P ++ +S YF K E ++ + N + ++ I
Sbjct: 452 ICIPIEESIAIGNQINIPS-LSFIFKTSSYLYFQNQK-TKELDDFFGDIHNDILDIQSRI 509
Query: 234 LSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSS-QSHVSFDS 288
+ EI + I L + ++D + A Q D V PI+S+ Q + S
Sbjct: 510 EKEVVDEIMSNSGSIIDLCNYCTQLDCILSLASCVQAYDLVKPIISTEQQEIEIQS 565
>UNIPROTKB|A2BEX2 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:BX248244 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
EMBL:CR759915 UniGene:Hs.647011 HGNC:HGNC:7328 HOVERGEN:HBG001449
ChiTaRS:MSH5 EMBL:BX248133 SMR:A2BEX2 Ensembl:ENST00000426512
Ensembl:ENST00000442688 Uniprot:A2BEX2
Length = 497
Score = 175 (66.7 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 61/230 (26%), Positives = 116/230 (50%)
Query: 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQN 411
RV VITGPN+ GK+ +K +GL + M+ G ++PA+ + D I I +S+
Sbjct: 248 RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESISLG 306
Query: 412 LSTFSGHISR-IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLA--- 467
LSTF +++ + + + +SLVLIDE G GT+ +G+AL ++L++ R
Sbjct: 307 LSTFMIDLNQQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHI 366
Query: 468 VVTTHYADLSCLKDKDTRFENAATEF-SLETLRPT------YRILWGSTGDSNALNIAKS 520
V T++ L L+ + ++ ++ET Y++ G S+A + A
Sbjct: 367 FVATNFLSLVQLQLLP---QGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQ 423
Query: 521 IGFDRKIIQRAQKLVERLR------PERQQHRKSELY--QSLMEERRKLE 562
G K++ R +++ + +R P + +K+++ Q+L+++ KL+
Sbjct: 424 AGLPDKLVARGKEVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLD 473
Score = 39 (18.8 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 22/80 (27%), Positives = 35/80 (43%)
Query: 20 SQKLLNQTSAALAMMQSQPLDLST-IEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNV 78
S++ L+ SA + + DL I D +L + Q+L+ + + L + +V
Sbjct: 134 SEEKLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDV 193
Query: 79 WKKLTEAAELDGDSLQRYSP 98
L AA G S RYSP
Sbjct: 194 LLALASAARDYGYSRPRYSP 213
>UNIPROTKB|F1PBG8 [details] [associations]
symbol:MSH5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
OMA:NDLVFFY GeneTree:ENSGT00550000074977 EMBL:AAEX03008217
EMBL:AAEX03008216 Ensembl:ENSCAFT00000000966 Uniprot:F1PBG8
Length = 857
Score = 182 (69.1 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 39/108 (36%), Positives = 66/108 (61%)
Query: 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQN 411
RV VITGPN+ GK+ +K +GL + M+ G ++PA+ + D I I +S+
Sbjct: 609 RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESISLG 667
Query: 412 LSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
LSTF ++++ + +++SLVLIDE G GT+ +G+AL ++L++
Sbjct: 668 LSTFMIDLNQVAKAVNNATKQSLVLIDEFGKGTNTVDGLALLAAVLRH 715
Score = 38 (18.4 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 23/82 (28%), Positives = 35/82 (42%)
Query: 20 SQKLLNQTSAALAMMQSQPLDLST-IEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNV 78
S+ L+ SA + + DL I D +L + Q+L+ + + L + +V
Sbjct: 495 SEGKLHYRSARTKELDALLGDLHCDIRDQETLLMHQLQCQVLARAAVFTRVLDLASRLDV 554
Query: 79 WKKLTEAAELDGDSLQRYSPLL 100
L AA G S RYSP L
Sbjct: 555 LLALASAARDYGYSRPRYSPQL 576
>UNIPROTKB|A3KGM4 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 IPI:IPI00645968
SMR:A3KGM4 Ensembl:ENST00000427968 Ensembl:ENST00000458058
Uniprot:A3KGM4
Length = 727
Score = 179 (68.1 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 39/108 (36%), Positives = 65/108 (60%)
Query: 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQN 411
RV VITGPN+ GK+ +K +GL + M+ G ++PA+ + D I I +S+
Sbjct: 586 RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESISLG 644
Query: 412 LSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
LSTF ++++ + + +SLVLIDE G GT+ +G+AL ++L++
Sbjct: 645 LSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRH 692
Score = 39 (18.8 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 22/80 (27%), Positives = 35/80 (43%)
Query: 20 SQKLLNQTSAALAMMQSQPLDLST-IEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNV 78
S++ L+ SA + + DL I D +L + Q+L+ + + L + +V
Sbjct: 472 SEEKLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDV 531
Query: 79 WKKLTEAAELDGDSLQRYSP 98
L AA G S RYSP
Sbjct: 532 LLALASAARDYGYSRPRYSP 551
>UNIPROTKB|Q5SSQ8 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL662834 EMBL:CR936239
SUPFAM:SSF48334 EMBL:CR925765 UniGene:Hs.647011 HGNC:HGNC:7328
HOVERGEN:HBG001449 ChiTaRS:MSH5 IPI:IPI00797508 SMR:Q5SSQ8
Ensembl:ENST00000436559 Ensembl:ENST00000458144 UCSC:uc011iri.2
Uniprot:Q5SSQ8
Length = 821
Score = 179 (68.1 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 39/108 (36%), Positives = 65/108 (60%)
Query: 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQN 411
RV VITGPN+ GK+ +K +GL + M+ G ++PA+ + D I I +S+
Sbjct: 603 RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESISLG 661
Query: 412 LSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
LSTF ++++ + + +SLVLIDE G GT+ +G+AL ++L++
Sbjct: 662 LSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRH 709
Score = 39 (18.8 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 22/80 (27%), Positives = 35/80 (43%)
Query: 20 SQKLLNQTSAALAMMQSQPLDLST-IEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNV 78
S++ L+ SA + + DL I D +L + Q+L+ + + L + +V
Sbjct: 489 SEEKLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDV 548
Query: 79 WKKLTEAAELDGDSLQRYSP 98
L AA G S RYSP
Sbjct: 549 LLALASAARDYGYSRPRYSP 568
>UNIPROTKB|A2BEX3 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:BX248244 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 EMBL:BX248133
SMR:A2BEX3 Ensembl:ENST00000444225 Uniprot:A2BEX3
Length = 467
Score = 170 (64.9 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 39/109 (35%), Positives = 65/109 (59%)
Query: 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQN 411
RV VITGPN+ GK+ +K +GL + M+ G ++PA+ + D I I +S+
Sbjct: 248 RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESISLG 306
Query: 412 LSTFSGHISR-IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
LSTF +++ + + + +SLVLIDE G GT+ +G+AL ++L++
Sbjct: 307 LSTFMIDLNQQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRH 355
Score = 39 (18.8 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 22/80 (27%), Positives = 35/80 (43%)
Query: 20 SQKLLNQTSAALAMMQSQPLDLST-IEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNV 78
S++ L+ SA + + DL I D +L + Q+L+ + + L + +V
Sbjct: 134 SEEKLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDV 193
Query: 79 WKKLTEAAELDGDSLQRYSP 98
L AA G S RYSP
Sbjct: 194 LLALASAARDYGYSRPRYSP 213
>UNIPROTKB|A3KGM6 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 HOGENOM:HOG000006649
IPI:IPI00978527 SMR:A3KGM6 Ensembl:ENST00000416819 Uniprot:A3KGM6
Length = 728
Score = 170 (64.9 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 39/109 (35%), Positives = 65/109 (59%)
Query: 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQN 411
RV VITGPN+ GK+ +K +GL + M+ G ++PA+ + D I I +S+
Sbjct: 586 RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESISLG 644
Query: 412 LSTFSGHISR-IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
LSTF +++ + + + +SLVLIDE G GT+ +G+AL ++L++
Sbjct: 645 LSTFMIDLNQQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRH 693
Score = 39 (18.8 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 22/80 (27%), Positives = 35/80 (43%)
Query: 20 SQKLLNQTSAALAMMQSQPLDLST-IEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNV 78
S++ L+ SA + + DL I D +L + Q+L+ + + L + +V
Sbjct: 472 SEEKLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDV 531
Query: 79 WKKLTEAAELDGDSLQRYSP 98
L AA G S RYSP
Sbjct: 532 LLALASAARDYGYSRPRYSP 551
>WB|WBGene00003422 [details] [associations]
symbol:msh-6 species:6239 "Caenorhabditis elegans"
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IMP] [GO:0032301 "MutSalpha complex" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0008630 GO:GO:0003684 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 EMBL:FO081580
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 HSSP:Q56215 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000243127 KO:K08737
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 RefSeq:NP_491163.1
ProteinModelPortal:Q9N3T8 SMR:Q9N3T8 IntAct:Q9N3T8 MINT:MINT-227678
STRING:Q9N3T8 PaxDb:Q9N3T8 EnsemblMetazoa:Y47G6A.11 GeneID:171914
KEGG:cel:CELE_Y47G6A.11 UCSC:Y47G6A.11 CTD:171914
WormBase:Y47G6A.11 InParanoid:Q9N3T8 OMA:RDHIMAG NextBio:873221
Uniprot:Q9N3T8
Length = 1186
Score = 175 (66.7 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 54/198 (27%), Positives = 96/198 (48%)
Query: 350 ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLE 409
E V+++TGPN GGK+ M+ + ++++ G +PA + RL D I IG + +
Sbjct: 954 EAAVMLLTGPNMGGKSTLMRQTAVLAILAHIGSMVPAFSM-RLTPIDRIFTRIGANDRIM 1012
Query: 410 QNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVV 469
STF + +L+ ++ SL+L+DE+G GT +G A+A+++LQ + D +
Sbjct: 1013 CGESTFFIELKETDIMLKNATKHSLLLVDELGRGTSTFDGTAIASAVLQKISDDLACRTF 1072
Query: 470 -TTHY---------------ADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSN 513
+THY A + C+ DK+ E+ ++E + Y + G S
Sbjct: 1073 FSTHYHSICDSFTNHPNVRLAHMKCVVDKENN-EDP----TMEDVTFLYELESGICPKSY 1127
Query: 514 ALNIAKSIGFDRKIIQRA 531
AK G D ++++ A
Sbjct: 1128 GFYAAKLAGIDHQVVRNA 1145
Score = 39 (18.8 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 5 VVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQ 37
V+ K PFG+ L S LL T + Q Q
Sbjct: 598 VINKCSTPFGRRLLRSW-LLQPTCDPKKLEQRQ 629
Score = 38 (18.4 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 14/55 (25%), Positives = 22/55 (40%)
Query: 23 LLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77
LL A+++ + +T I GIL S LL + +R V+N
Sbjct: 432 LLANVIVVQAIVERGSISSTTKSIINGILFSVPVEHLLPKKQFMTAEDVVRIVSN 486
>UNIPROTKB|Q9N3T8 [details] [associations]
symbol:msh-6 "Protein MSH-6" species:6239 "Caenorhabditis
elegans" [GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0008630 GO:GO:0003684 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 EMBL:FO081580
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 HSSP:Q56215 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000243127 KO:K08737
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 RefSeq:NP_491163.1
ProteinModelPortal:Q9N3T8 SMR:Q9N3T8 IntAct:Q9N3T8 MINT:MINT-227678
STRING:Q9N3T8 PaxDb:Q9N3T8 EnsemblMetazoa:Y47G6A.11 GeneID:171914
KEGG:cel:CELE_Y47G6A.11 UCSC:Y47G6A.11 CTD:171914
WormBase:Y47G6A.11 InParanoid:Q9N3T8 OMA:RDHIMAG NextBio:873221
Uniprot:Q9N3T8
Length = 1186
Score = 175 (66.7 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 54/198 (27%), Positives = 96/198 (48%)
Query: 350 ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLE 409
E V+++TGPN GGK+ M+ + ++++ G +PA + RL D I IG + +
Sbjct: 954 EAAVMLLTGPNMGGKSTLMRQTAVLAILAHIGSMVPAFSM-RLTPIDRIFTRIGANDRIM 1012
Query: 410 QNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVV 469
STF + +L+ ++ SL+L+DE+G GT +G A+A+++LQ + D +
Sbjct: 1013 CGESTFFIELKETDIMLKNATKHSLLLVDELGRGTSTFDGTAIASAVLQKISDDLACRTF 1072
Query: 470 -TTHY---------------ADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSN 513
+THY A + C+ DK+ E+ ++E + Y + G S
Sbjct: 1073 FSTHYHSICDSFTNHPNVRLAHMKCVVDKENN-EDP----TMEDVTFLYELESGICPKSY 1127
Query: 514 ALNIAKSIGFDRKIIQRA 531
AK G D ++++ A
Sbjct: 1128 GFYAAKLAGIDHQVVRNA 1145
Score = 39 (18.8 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 5 VVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQ 37
V+ K PFG+ L S LL T + Q Q
Sbjct: 598 VINKCSTPFGRRLLRSW-LLQPTCDPKKLEQRQ 629
Score = 38 (18.4 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 14/55 (25%), Positives = 22/55 (40%)
Query: 23 LLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77
LL A+++ + +T I GIL S LL + +R V+N
Sbjct: 432 LLANVIVVQAIVERGSISSTTKSIINGILFSVPVEHLLPKKQFMTAEDVVRIVSN 486
>UNIPROTKB|A3KGM5 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 HOGENOM:HOG000006649
IPI:IPI00893328 SMR:A3KGM5 Ensembl:ENST00000457917 Uniprot:A3KGM5
Length = 745
Score = 170 (64.9 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 39/109 (35%), Positives = 65/109 (59%)
Query: 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQN 411
RV VITGPN+ GK+ +K +GL + M+ G ++PA+ + D I I +S+
Sbjct: 603 RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESISLG 661
Query: 412 LSTFSGHISR-IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
LSTF +++ + + + +SLVLIDE G GT+ +G+AL ++L++
Sbjct: 662 LSTFMIDLNQQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRH 710
Score = 39 (18.8 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 22/80 (27%), Positives = 35/80 (43%)
Query: 20 SQKLLNQTSAALAMMQSQPLDLST-IEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNV 78
S++ L+ SA + + DL I D +L + Q+L+ + + L + +V
Sbjct: 489 SEEKLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDV 548
Query: 79 WKKLTEAAELDGDSLQRYSP 98
L AA G S RYSP
Sbjct: 549 LLALASAARDYGYSRPRYSP 568
>UNIPROTKB|Q75D87 [details] [associations]
symbol:AGOS_ABR137W "ABR137Wp" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] [GO:0043504
"mitochondrial DNA repair" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0000404 "loop DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0007131 "reciprocal meiotic recombination" evidence=IRD]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005739 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AE016815 GenomeReviews:AE016815_GR GO:GO:0008094
GO:GO:0043504 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000157750
OrthoDB:EOG42591V SUPFAM:SSF53150 GO:GO:0032300 GO:GO:0032139
RefSeq:NP_983084.2 STRING:Q75D87 EnsemblFungi:AAS50908
GeneID:4619194 KEGG:ago:AGOS_ABR137W Uniprot:Q75D87
Length = 955
Score = 165 (63.1 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 51/193 (26%), Positives = 99/193 (51%)
Query: 355 VITGPNTGGKTASMKTLGLASLMSKAGLYLP-AKNHPRLPWFDLILADIGDHQSLEQNLS 413
++TGPN GGK+ ++ + ++++ G Y+P A H L D I + +G L ++S
Sbjct: 762 IVTGPNMGGKSTFLRQTAIIVILAQIGCYVPCASAHIGL--VDKIFSRVGSADDLYNDMS 819
Query: 414 TFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL--RDRVGLAVVTT 471
TF + +L+ ++ SL ++DEIG GT+ +GV +A + L ++ ++R A+ +
Sbjct: 820 TFMVEMLETSFMLKGATKRSLAILDEIGRGTNAEDGVGIAYTTLHHMLTKNRCR-ALFAS 878
Query: 472 HYA-DLSCLKDKDT------RFENAATEFSLETLRPTY--RILWGSTGDSNALNIAKSIG 522
H+ +LS L ++ R T R Y +I G S+A+ +A+ G
Sbjct: 879 HFGRELSELVEQHLPPGARKRVHFYRTNVREHNGRSFYDHKITPGICLSSDAIRVAQMAG 938
Query: 523 FDRKIIQRAQKLV 535
F ++ + A++++
Sbjct: 939 FPQEALDVARRVL 951
Score = 46 (21.3 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 22/79 (27%), Positives = 35/79 (44%)
Query: 220 VRLSNSEIA-EETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPIL 278
+ L+ E+ EE IL L +I EI+ + V +D+ + A A + VCP
Sbjct: 661 MHLTTLELLDEERYILDNLQRKIITYSTEIRAIAQTVDYLDVLSSFAILASEKNLVCP-- 718
Query: 279 SSQSHVSFDSSINIEGIKH 297
V S++ I G +H
Sbjct: 719 ----QVDESSALEIVGGRH 733
>UNIPROTKB|A8JBH4 [details] [associations]
symbol:CHLREDRAFT_106717 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
EMBL:DS496153 RefSeq:XP_001699298.1 EnsemblPlants:EDO98728
GeneID:5724848 KEGG:cre:CHLREDRAFT_106717 Uniprot:A8JBH4
Length = 111
Score = 135 (52.6 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 36/110 (32%), Positives = 56/110 (50%)
Query: 355 VITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQS------- 407
++TGPN GK+ ++ +GL ++++AG +PA H LP F +L +G
Sbjct: 1 LVTGPNMSGKSTYLQQVGLLVVLAQAGCPVPAA-HCCLPPFTALLGRLGTAMGGGAGAGG 59
Query: 408 ----LEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALA 453
LE S+F + +L SLVL+DE+G GT ++GV LA
Sbjct: 60 GADDLESGRSSFLTEMQDAAHVLSAAGPRSLVLLDELGRGTSTADGVGLA 109
>UNIPROTKB|Q7S0U7 [details] [associations]
symbol:NCU07407 "Putative uncharacterized protein"
species:367110 "Neurospora crassa OR74A" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0043504 "mitochondrial DNA repair" evidence=IBA] [GO:0000228
"nuclear chromosome" evidence=IRD] [GO:0000404 "loop DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0007131 "reciprocal meiotic recombination" evidence=IRD]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005739 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0008094 GO:GO:0043504 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150
GO:GO:0032300 GO:GO:0032139 OMA:RVGGFYE EMBL:AABX02000038
RefSeq:XP_958182.2 UniGene:Ncr.21352 EnsemblFungi:EFNCRT00000007377
GeneID:3874329 KEGG:ncr:NCU07407 Uniprot:Q7S0U7
Length = 1184
Score = 164 (62.8 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 42/139 (30%), Positives = 73/139 (52%)
Query: 355 VITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLST 414
+ITGPN GK+ ++ L +++++ G Y+PA ++ L D I + +G +L + ST
Sbjct: 980 LITGPNMAGKSTFLRQNALITILAQMGCYVPA-DYAELGIVDAIFSRVGSADNLYADQST 1038
Query: 415 FSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHY 473
F + IL + S V++DEIG GT P +G A+A + L +L + TH+
Sbjct: 1039 FMVEMMETAAILRQATPRSFVIMDEIGRGTTPEDGTAVAFASLHHLLTVNKCRGLFATHF 1098
Query: 474 ADLS-CLKDKDTRFENAAT 491
+ LK++ E+ A+
Sbjct: 1099 HAVGDMLKEQGLVVEDGAS 1117
Score = 45 (20.9 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 228 AEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQS 282
+EETA+ S L + + +++ + E+D+A + A A + V PIL S
Sbjct: 876 SEETALFSSLRSNVVTLLIKLRRNALVLDELDIATSLARLATEQNLVRPILHDSS 930
>UNIPROTKB|Q7SCW0 [details] [associations]
symbol:NCU09384 "Predicted protein" species:367110
"Neurospora crassa OR74A" [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0051026 "chiasma assembly" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IRD] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0032300 "mismatch repair complex" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 PROSITE:PS00486
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334 HSSP:Q56215 KO:K08741
OrthoDB:EOG4W6S4H EMBL:AABX02000082 RefSeq:XP_963830.1
ProteinModelPortal:Q7SCW0 STRING:Q7SCW0
EnsemblFungi:EFNCRT00000009472 GeneID:3879979 KEGG:ncr:NCU09384
OMA:INVICER Uniprot:Q7SCW0
Length = 506
Score = 147 (56.8 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 54/209 (25%), Positives = 91/209 (43%)
Query: 350 ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLE 409
E +V+TGPN GK+ MK + L ++ G Y+P + D I + ++
Sbjct: 232 EPSALVLTGPNNSGKSIYMKQVALIIYLAHIGSYVPV-TRATIGVTDRIFTRVATRETAM 290
Query: 410 QNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL----RDRVG 465
+ S F + + + +R SL+L DE G GT G A+ T+ L + DR
Sbjct: 291 DDESAFMTDLKQAAFSINFATRRSLILADEFGKGTTMEAGAAVFTAYLHHFLELDADRPR 350
Query: 466 LAVVTTHYADL---SCLKDKD----TRFE---NAATEFSLETLRPTYRILWGSTGDSNAL 515
+ +V+TH+ D+ LK ++ E N E E + YR++ G S L
Sbjct: 351 M-LVSTHFHDVFNRGFLKPEEGVAYAHMEVRLNPEAEEREEHITYLYRLVHGRAEHSLGL 409
Query: 516 NIAKSIGFDRKIIQRAQKLVERLRPERQQ 544
A + +++RA ++ L ER +
Sbjct: 410 MCAAINHIEDDVLKRAGDILGML--ERDE 436
Score = 51 (23.0 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 23/86 (26%), Positives = 44/86 (51%)
Query: 213 VEFNNMEVRLSNSEIA-EETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWM 271
VE ++M L+ EIA EE ++ L +++ E + ++ + E+D A A A+
Sbjct: 114 VELDDMYGDLTE-EIADEEIEVIVELAGAVSEHEDALIRALEVLGELDSLLALAFAAEKY 172
Query: 272 DGVCPILSSQSHVSFDSSINIEGIKH 297
+ P ++S++ I+IEG +H
Sbjct: 173 NWAAPKMTSEN------IIDIEGGRH 192
>SGD|S000002313 [details] [associations]
symbol:MSH5 "Protein of the MutS family" species:4932
"Saccharomyces cerevisiae" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0030983 "mismatched DNA
binding" evidence=IEA;IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] [GO:0032300 "mismatch
repair complex" evidence=IRD] [GO:0003674 "molecular_function"
evidence=ND] [GO:0006298 "mismatch repair" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 SGD:S000002313
GO:GO:0005524 EMBL:BK006938 GO:GO:0006298 GO:GO:0030983 EMBL:X97751
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334 KO:K08741
GeneTree:ENSGT00550000074977 EMBL:L42517 EMBL:Z74202 PIR:S67702
RefSeq:NP_010127.1 ProteinModelPortal:Q12175 DIP:DIP-1457N
IntAct:Q12175 MINT:MINT-388063 STRING:Q12175 PRIDE:Q12175
EnsemblFungi:YDL154W GeneID:851401 KEGG:sce:YDL154W CYGD:YDL154w
HOGENOM:HOG000113662 OMA:SAFMIDL OrthoDB:EOG4W6S4H NextBio:968570
Genevestigator:Q12175 GermOnline:YDL154W Uniprot:Q12175
Length = 901
Score = 154 (59.3 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 38/127 (29%), Positives = 69/127 (54%)
Query: 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQN 411
R++V+TG N GK+ + GL +++ G ++PA+ R+ D IL I +++ +
Sbjct: 637 RIIVVTGANASGKSVYLTQNGLIVYLAQIGCFVPAER-ARIGIADKILTRIRTQETVYKT 695
Query: 412 LSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR--DRVGLAVV 469
S+F ++ L L + +SL+LIDE G GTD +G +L SI+ + ++ +
Sbjct: 696 QSSFLLDSQQMAKSLSLATEKSLILIDEYGKGTDILDGPSLFGSIMLNMSKSEKCPRIIA 755
Query: 470 TTHYADL 476
TH+ +L
Sbjct: 756 CTHFHEL 762
Score = 52 (23.4 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 21/92 (22%), Positives = 38/92 (41%)
Query: 472 HYADLSCLKDKDTRFENA--ATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQ 529
HY + K E A + E + +++ G + S + AK G R I++
Sbjct: 777 HYCTDILISQKYNLLETAHVGEDHESEGITFLFKVKEGISKQSFGIYCAKVCGLSRDIVE 836
Query: 530 RAQKLVERL-RPERQQHRKSELYQSLMEERRK 560
RA++L + R + + L + M E +K
Sbjct: 837 RAEELSRMINRGDDVVQQCGNLTEKEMREFQK 868
Score = 40 (19.1 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 233 ILSLLTAEIAKSEREIKYLMDRVLEID 259
I +L EI +S I + RVLE+D
Sbjct: 501 IPNLQWEEIFRSSENIYFKNGRVLELD 527
>SGD|S000001891 [details] [associations]
symbol:MSH4 "Protein involved in meiotic recombination"
species:4932 "Saccharomyces cerevisiae" [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0003677 "DNA binding" evidence=IEA;IPI]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0030983 "mismatched
DNA binding" evidence=IEA;IBA] [GO:0051026 "chiasma assembly"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IRD]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0000228 "nuclear
chromosome" evidence=IDA] [GO:0045143 "homologous chromosome
segregation" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000001891 GO:GO:0005524 EMBL:D50617
EMBL:BK006940 GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 GeneTree:ENSGT00550000074897 KO:K08740
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:U13999
PIR:A55201 RefSeq:NP_116652.1 ProteinModelPortal:P40965 SMR:P40965
DIP:DIP-2426N IntAct:P40965 MINT:MINT-565232 STRING:P40965
EnsemblFungi:YFL003C GeneID:850545 KEGG:sce:YFL003C
HOGENOM:HOG000094365 OMA:MSGKSVY OrthoDB:EOG4VHPFT NextBio:966313
Genevestigator:P40965 GermOnline:YFL003C Uniprot:P40965
Length = 878
Score = 157 (60.3 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 49/213 (23%), Positives = 104/213 (48%)
Query: 332 LSKGISDFPVPIDIK-VECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP 390
L K + +F VP I + + + +ITG N GK+ +K + L +M++ G +PA +
Sbjct: 608 LEKVLKNF-VPNTISSTKHSSSLQIITGCNMSGKSVYLKQVALICIMAQMGSGIPAL-YG 665
Query: 391 RLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGV 450
P F + A + + S+E S F + + L+ ++ E+L+++DE+G G+ ++G
Sbjct: 666 SFPVFKRLHARVCN-DSMELTSSNFGFEMKEMAYFLDDINTETLLILDELGRGSSIADGF 724
Query: 451 ALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSL---ETLRPTYRILWG 507
++ ++ ++L ++TH+ D+ + K + + L +++ Y++
Sbjct: 725 CVSLAVTEHLLRTEATVFLSTHFQDIPKIMSKKPAVSHLHMDAVLLNDNSVKMNYQLTQK 784
Query: 508 STGDSNA-LNIAKSIGFDRKIIQRAQKLVERLR 539
S N+ + + K I F+ II A + L+
Sbjct: 785 SVAIENSGIRVVKKI-FNPDIIAEAYNIHSLLK 816
Score = 45 (20.9 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 120 IDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQI 160
I+C L I+ + + E++ + E +D LL K+A I
Sbjct: 521 IECTTLNIIKKNARLKEVMEEILLLSEETVDELLDKIATHI 561
>UNIPROTKB|Q6L4V0 [details] [associations]
symbol:P0010D04.9 "Putative uncharacterized protein
P0010D04.9" species:39947 "Oryza sativa Japonica Group" [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:AP008211 GO:GO:0006298
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
KO:K08741 EMBL:AC130605 RefSeq:NP_001055948.1 UniGene:Os.53982
GeneID:4339215 KEGG:osa:4339215 ProtClustDB:CLSN2695708
Uniprot:Q6L4V0
Length = 809
Score = 155 (59.6 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 58/237 (24%), Positives = 107/237 (45%)
Query: 321 DVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKA 380
+++N + ++ + F VP D K+ R+ +ITGPN GK+ +K + L ++
Sbjct: 538 EIQNGRHALQEMT--VDTF-VPNDTKIRSSGRINIITGPNYSGKSIYIKQVALVVFLAHI 594
Query: 381 GLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEI 440
G ++PA + + D I +G +S+ STF + ++ +L + SL L+DE
Sbjct: 595 GSFVPADS-AIVGLTDRIFCAMGS-KSMTSEQSTFMIDLHQVGTMLRHATSRSLCLLDEF 652
Query: 441 GSGTDPSEGVALATSILQYLRD-----RVGLA-----VVTTHYADLS-CLKDKDTRFENA 489
G GT +G+ L + + D +V L+ + T Y S +K N
Sbjct: 653 GKGTLTEDGIGLLGGTISHFTDYDCPPKVLLSTHLTQIFTESYLPQSEHIKCYTMSVLNP 712
Query: 490 ATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHR 546
+ E + YR++ G S L+ A+ G +++QRA ++ + +R R
Sbjct: 713 DEQTDNEDVIFLYRLVPGQALLSFGLHCAQLAGVPSEVVQRAVTVLGDIHSKRPIRR 769
Score = 44 (20.5 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 19/94 (20%), Positives = 40/94 (42%)
Query: 190 LPD-GIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREI 248
LPD A + ++ + E +N+ + + + E AI+ L + + ++
Sbjct: 442 LPDFEFAFSEEGEERRFYYHTQKTRELDNLLGDIYHKILDMERAIIRDLVCRVCQFIPQL 501
Query: 249 KYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQS 282
++ E+D + A A+ + V PIL+ S
Sbjct: 502 TKAVNFAAELDCILSLAIVARQNNYVRPILTEDS 535
>UNIPROTKB|B1N483 [details] [associations]
symbol:EHI_019060 "DNA mismatch repair protein mutS,
putative" species:5759 "Entamoeba histolytica" [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 EMBL:DS571351 RefSeq:XP_001913998.1
ProteinModelPortal:B1N483 STRING:B1N483 GeneID:6219997
KEGG:ehi:EHI_019060 EuPathDB:AmoebaDB:EHI_019060 InParanoid:B1N483
Uniprot:B1N483
Length = 225
Score = 136 (52.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 50/172 (29%), Positives = 81/172 (47%)
Query: 377 MSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVL 436
M+ G + A N ++P F I S +LS F+ S + L +S +SL+L
Sbjct: 1 MALLGCGVCASN-AQIPLFSHIFTKFSSSDSSLSSLSAFTTDCSLLSTSLRHLSNDSLLL 59
Query: 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLA---VVTTH------YADLS-CLKDKDTRF 486
IDE G GT PS+G+AL + L+YL+ A +++TH Y DL+ C+ K
Sbjct: 60 IDEFGKGTHPSDGLALFIATLRYLQSLGSNAPKTIISTHFISFFHYIDLNKCVPLKMDVL 119
Query: 487 ENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERL 538
N + S+ L Y ++ G + S ++ A+ +I RA ++ L
Sbjct: 120 LNQSNN-SITFL---YHLVNGISDSSYGIHCARLAHLPSSLISRASQIATSL 167
>UNIPROTKB|A8J8E2 [details] [associations]
symbol:CHLREDRAFT_120228 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 InterPro:IPR015536
PANTHER:PTHR11361:SF31 EMBL:DS496143 RefSeq:XP_001697747.1
EnsemblPlants:EDO99899 GeneID:5723369 KEGG:cre:CHLREDRAFT_120228
ProtClustDB:CLSN2703491 Uniprot:A8J8E2
Length = 86
Score = 120 (47.3 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 26/87 (29%), Positives = 50/87 (57%)
Query: 357 TGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFS 416
+GPN GGK+ ++ LA+++++ G ++PA++ P D + +G S+ STF
Sbjct: 1 SGPNMGGKSTLLRQTCLAAILAQVGAWVPAESLTLSP-VDSLFVRMGARDSIMTGQSTFF 59
Query: 417 GHISRIVDILELVSRESLVLIDEIGSG 443
++ +L + +SLV++DE+G G
Sbjct: 60 IELAETAAMLARATPDSLVVLDELGRG 86
>UNIPROTKB|A9WD22 [details] [associations]
symbol:Caur_0340 "DNA mismatch repair protein MutS domain
protein" species:324602 "Chloroflexus aurantiacus J-10-fl"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
InterPro:IPR000432 Pfam:PF00488 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0030983 EMBL:CP000909
GenomeReviews:CP000909_GR GO:GO:0008094 eggNOG:COG0249
GO:GO:0032300 RefSeq:YP_001633980.1 GeneID:5827953
KEGG:cau:Caur_0340 PATRIC:21411212 HOGENOM:HOG000020547 OMA:QGGKSTF
ProtClustDB:CLSK865139 BioCyc:CAUR324602:GIXU-343-MONOMER
Uniprot:A9WD22
Length = 505
Score = 138 (53.6 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 36/134 (26%), Positives = 77/134 (57%)
Query: 344 DIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIG 403
DI + ++ ++++TGPN GGKT ++++G+A LM + G+++PA++ + + +
Sbjct: 320 DISADGKS-LIIVTGPNRGGKTVFLRSVGVAQLMMQCGMFVPAES-----FLANLTTGLF 373
Query: 404 DHQSLEQNLST----FSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
H E++ + F ++R+ I++ ++ +L+L++E S T+ EG +A I+
Sbjct: 374 THFKREEDKTMERGKFEEELARMSVIVDYLTPNALLLLNESFSATNEREGSEIARQIVST 433
Query: 460 LRDRVGLAVV-TTH 472
L ++ G+ V TH
Sbjct: 434 LIEK-GIKVYFVTH 446
>UNIPROTKB|F1RF09 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0019237 "centromeric
DNA binding" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0019237 GO:GO:0003697 GO:GO:0043570
GO:GO:0045910 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032302
GO:GO:0032181 GO:GO:0032357 GO:GO:0032142 GO:GO:0051096 OMA:KRTKSIY
GO:GO:0016447 GeneTree:ENSGT00550000074949 EMBL:CU927965
EMBL:CU928503 Ensembl:ENSSSCT00000015430 Uniprot:F1RF09
Length = 1126
Score = 140 (54.3 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 42/165 (25%), Positives = 81/165 (49%)
Query: 322 VENSEMTVGSLSKGISDFPVP--IDIKVECETRVVVITGPNTGGKTASMKTLGLAS-LMS 378
++N V + G D VP D+ E +V++ GP+ G + K + L + +++
Sbjct: 847 IKNGRHPVIDVLLGEQDQYVPNSTDLSEWSELSLVLV-GPSRGIRGNFFKIIRLINHILA 905
Query: 379 KAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLID 438
L++ L D +G ++ + STF ++ +I+ + +SLV++D
Sbjct: 906 LMALFVILAEESWLFVLDFFFIRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILD 965
Query: 439 EIGSGTDPSEGVALATSILQ-YLRDRVGLAVVTTHYADLSCLKDK 482
E+G GT +G+A+A + L+ ++RD L + THY + C +K
Sbjct: 966 ELGRGTSTHDGIAIAYATLEHFIRDVKSLTLFVTHYPPV-CELEK 1009
Score = 49 (22.3 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 502 YRILWGSTGDSNALNIAKSIGFDRKIIQRA---QKLVERLRPERQQHRKS 548
Y+I GS S LN+AK +I+++A K +E L +++ KS
Sbjct: 1047 YQITRGSAARSYGLNVAKLADVPGEILKKAASKSKELEGLVNRKRKRLKS 1096
Score = 43 (20.2 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 21/109 (19%), Positives = 46/109 (42%)
Query: 74 AVNN-VWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELE-EKIGFCIDCKLLIILDRA 131
AVN+ V L + L+ L SP+ LK N +K D ++ +
Sbjct: 646 AVNSHVQSNLLQTCLLEIPEL--LSPVEHYLKILNEQAAKNGDKTELFKDLSDFPVIKKR 703
Query: 132 SEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCV 180
++++ + + + +++ + +LK +AQ G + + K + C+
Sbjct: 704 KDEIQEVTNKIQTHLQEIRKILKNPSAQYVTVSGQEFMIEVKNSAVSCI 752
>UNIPROTKB|Q7NE77 [details] [associations]
symbol:gll4003 "Gll4003 protein" species:251221
"Gloeobacter violaceus PCC 7421" [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0006298 "mismatch repair" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 Pfam:PF00488 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0030983 GO:GO:0008094
EMBL:BA000045 GenomeReviews:BA000045_GR SUPFAM:SSF48334 HSSP:Q56215
GO:GO:0032300 RefSeq:NP_926949.1 ProteinModelPortal:Q7NE77
GeneID:2602406 KEGG:gvi:gll4003 PATRIC:22047503
HOGENOM:HOG000022931 OMA:ESYFFAE ProtClustDB:CLSK923279
BioCyc:GVIO251221:GH9A-4052-MONOMER Uniprot:Q7NE77
Length = 619
Score = 136 (52.9 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 80/331 (24%), Positives = 134/331 (40%)
Query: 211 GAVE-FNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGF-- 267
G+V + + LS E +ET L L AE +E ++ L V DL F++ +
Sbjct: 279 GSVRAYAGLFAALSRLECRDET--LKSLQAESLNAEDRLRKLDTLVGCSDLRFSQLIYLA 336
Query: 268 AQWMD----GVCPILSSQSHVSFDSSIN-IEGIKHXXXXXXXXXXXXXXXXXXXXXXXDV 322
QW+ V +L S S D + +E + D
Sbjct: 337 VQWITLWDVHVLGLLESWRRQSGDRVRSWLEALAQIEALASLASLAHDQPEWVFAEV-DT 395
Query: 323 ENSEMTVGSLSKGISDFPVPI--DIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKA 380
+ G L + V + D+ + +++TG N GK+ ++++GL +++ A
Sbjct: 396 RLQVIAAGQLGHPLIGEAVRVANDVTLGPPGTFLLVTGSNMSGKSTLLRSIGLNIVLALA 455
Query: 381 GLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISR---IVDILELVSRESLVLI 437
G + A++ RLP L + SL LS + + R +VD R L L+
Sbjct: 456 GAPVCARSL-RLPPVTL-KTSMRVQDSLASGLSFYMAELQRLKEVVDAARPAERPLLYLL 513
Query: 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTH---YADLSCLKD--KDTRF-ENAAT 491
DEI GT+ +E +L +L R L ++TH ADL L + F E+ A
Sbjct: 514 DEILLGTNSAERQVAVRRVLSFLLGRGALGAISTHDLALADLPELAAAARTVHFREHFAA 573
Query: 492 EFSLETLRPTYRILWGSTGDSNALNIAKSIG 522
+ + YR+ G +NAL + + +G
Sbjct: 574 GAAGPVMTFDYRMRPGVAPTTNALKLLELVG 604
>UNIPROTKB|Q23AD6 [details] [associations]
symbol:TTHERM_00426230 "MutS domain III family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009411 GO:GO:0003684 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0045910 GO:GO:0008094
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 EMBL:GG662724 RefSeq:XP_001013801.1
UniGene:Tth.12031 ProteinModelPortal:Q23AD6
EnsemblProtists:EAR93556 GeneID:7834338 KEGG:tet:TTHERM_00426230
ProtClustDB:CLSZ2445539 Uniprot:Q23AD6
Length = 1139
Score = 139 (54.0 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 42/163 (25%), Positives = 80/163 (49%)
Query: 376 LMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLV 435
L K G Y+PA+ D I IG L + STF + + + + + S+
Sbjct: 939 LQLKQGCYVPAEQC-EFSLVDRIFTRIGAGDKLIEGKSTFYIEMEEVKNSIMYGTYNSIA 997
Query: 436 LIDEIGSGTDPSEGVALATSILQYLRDRV-GLAVVTTHYADL-SCLKD-KDTRFENAATE 492
+ DE+G GT +GVA+A IL+Y +++ + TH+ L + L+ K+ F +
Sbjct: 998 IFDELGRGTSTFDGVAIAFGILKYFIEKIQSRCIFATHFFLLINELRFYKEISFYHMEYY 1057
Query: 493 FSLETLRPT--YRILWGSTGDSNALNIAKSIGFDRKIIQRAQK 533
+ ++ + Y++ G+ S +++AK +G ++ ++ AQK
Sbjct: 1058 YDNKSKKLIFKYKLKQGNAESSFGIDLAKIVGIEQSVLNLAQK 1100
>WB|WBGene00003420 [details] [associations]
symbol:msh-4 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] InterPro:IPR000432
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0051729 GO:GO:0006298 GO:GO:0030983
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 GeneTree:ENSGT00550000074897
EMBL:FO081112 HSSP:Q56215 PIR:T16784 RefSeq:NP_495458.1
UniGene:Cel.32838 ProteinModelPortal:Q22103 SMR:Q22103
STRING:Q22103 EnsemblMetazoa:T02G5.6 GeneID:191708
KEGG:cel:CELE_T02G5.6 UCSC:T02G5.6 CTD:191708 WormBase:T02G5.6
InParanoid:Q22103 OMA:ESAHILR NextBio:950048 Uniprot:Q22103
Length = 107
Score = 110 (43.8 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 22/87 (25%), Positives = 44/87 (50%)
Query: 402 IGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR 461
+G + L +N S F+ +S I++ + SLV++DE+ T EG+A+ +I + +
Sbjct: 1 MGHNDELIRNKSAFASEMSDAAAIVQYADKNSLVVLDELARSTSTEEGIAITYAICEKVL 60
Query: 462 DRVGLAVVTTHYADLSCLKDKDTRFEN 488
+ TH+ D++ L + +N
Sbjct: 61 KLHSYTFLATHFLDIAALANYSNAIDN 87
>UNIPROTKB|Q22103 [details] [associations]
symbol:msh-4 "Protein MSH-4" species:6239 "Caenorhabditis
elegans" [GO:0051026 "chiasma assembly" evidence=IBA] [GO:0045143
"homologous chromosome segregation" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IRD] [GO:0030983 "mismatched DNA
binding" evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] InterPro:IPR000432
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0051729 GO:GO:0006298 GO:GO:0030983
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 GeneTree:ENSGT00550000074897
EMBL:FO081112 HSSP:Q56215 PIR:T16784 RefSeq:NP_495458.1
UniGene:Cel.32838 ProteinModelPortal:Q22103 SMR:Q22103
STRING:Q22103 EnsemblMetazoa:T02G5.6 GeneID:191708
KEGG:cel:CELE_T02G5.6 UCSC:T02G5.6 CTD:191708 WormBase:T02G5.6
InParanoid:Q22103 OMA:ESAHILR NextBio:950048 Uniprot:Q22103
Length = 107
Score = 110 (43.8 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 22/87 (25%), Positives = 44/87 (50%)
Query: 402 IGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR 461
+G + L +N S F+ +S I++ + SLV++DE+ T EG+A+ +I + +
Sbjct: 1 MGHNDELIRNKSAFASEMSDAAAIVQYADKNSLVVLDELARSTSTEEGIAITYAICEKVL 60
Query: 462 DRVGLAVVTTHYADLSCLKDKDTRFEN 488
+ TH+ D++ L + +N
Sbjct: 61 KLHSYTFLATHFLDIAALANYSNAIDN 87
>UNIPROTKB|A9WD21 [details] [associations]
symbol:Caur_0339 "DNA mismatch repair protein MutS domain
protein" species:324602 "Chloroflexus aurantiacus J-10-fl"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
InterPro:IPR000432 Pfam:PF00488 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0030983 EMBL:CP000909
GenomeReviews:CP000909_GR GO:GO:0008094 eggNOG:COG0249
GO:GO:0032300 RefSeq:YP_001633979.1 ProteinModelPortal:A9WD21
GeneID:5827952 KEGG:cau:Caur_0339 PATRIC:21411210
HOGENOM:HOG000020534 OMA:THFEREE ProtClustDB:CLSK865138
BioCyc:CAUR324602:GIXU-342-MONOMER Uniprot:A9WD21
Length = 508
Score = 132 (51.5 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 51/184 (27%), Positives = 89/184 (48%)
Query: 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILAD-IGDH-QSLE 409
R++V+TGPN GGKT + G ++ G +P + L LAD I H + +E
Sbjct: 329 RILVVTGPNQGGKTTFARMFGQLHYLASLGCPVPGREA------GLFLADRIFTHFERIE 382
Query: 410 --QNL-STFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGL 466
QNL + R+ L + +S+ +++EI S T + + L+ I+ L D L
Sbjct: 383 DSQNLRGKLEDDLVRMHRALIQATPDSIFILNEIFSSTTVQDALFLSKEIMARLTDLDVL 442
Query: 467 AVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWG-STGDSNALNIAKSIGFDR 525
V T +L+ L +K A+ + +R T++I+ + G + AL++A+ G R
Sbjct: 443 GVWVTFLDELASLSEKMVSM--VASVDPNDPVRRTFQIIRKPADGLAYALSLARKHGLSR 500
Query: 526 KIIQ 529
+ +Q
Sbjct: 501 EQLQ 504
>UNIPROTKB|Q0DJI9 [details] [associations]
symbol:Os05g0274200 "Os05g0274200 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000403 "Y-form DNA binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005886 GO:GO:0005524
GO:GO:0003684 EMBL:AP008211 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0008094
GO:GO:0006311 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 KO:K08735 ProtClustDB:CLSN2680872
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 RefSeq:NP_001055070.2
UniGene:Os.18121 STRING:Q0DJI9 EnsemblPlants:LOC_Os05g19270.1
GeneID:4338271 KEGG:osa:4338271 Gramene:Q0DJI9 Uniprot:Q0DJI9
Length = 113
Score = 96 (38.9 bits), Expect = 0.00070, P = 0.00070
Identities = 24/79 (30%), Positives = 42/79 (53%)
Query: 371 LGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVS 430
+G+ LM++ G ++P + + D I A +G + +STF + IL+ S
Sbjct: 16 VGVNVLMAQVGSFVPC-DRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGAS 74
Query: 431 RESLVLIDEIGSGTDPSEG 449
+SL++IDE+G GT +G
Sbjct: 75 DKSLIIIDELGRGTSTYDG 93
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.367 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 623 600 0.00085 120 3 11 22 0.40 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 172
No. of states in DFA: 616 (65 KB)
Total size of DFA: 290 KB (2153 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 54.36u 0.15s 54.51t Elapsed: 00:00:02
Total cpu time: 54.41u 0.15s 54.56t Elapsed: 00:00:02
Start: Sat May 11 07:46:32 2013 End: Sat May 11 07:46:34 2013
WARNINGS ISSUED: 1