Query 006974
Match_columns 623
No_of_seqs 434 out of 4492
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 17:09:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006974.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006974hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00409 recombination and DNA 100.0 1.7E-84 3.8E-89 750.6 58.6 562 1-617 26-595 (782)
2 TIGR01069 mutS2 MutS2 family p 100.0 4.7E-82 1E-86 728.5 59.8 557 1-617 26-590 (771)
3 TIGR01070 mutS1 DNA mismatch r 100.0 2E-73 4.4E-78 662.0 44.4 486 1-540 284-783 (840)
4 PRK05399 DNA mismatch repair p 100.0 6.1E-71 1.3E-75 644.6 44.1 487 1-540 298-798 (854)
5 COG1193 Mismatch repair ATPase 100.0 2.1E-67 4.5E-72 596.8 41.9 516 2-582 25-541 (753)
6 COG0249 MutS Mismatch repair A 100.0 4.1E-67 8.8E-72 603.4 40.8 492 1-542 296-800 (843)
7 KOG0218 Mismatch repair MSH3 [ 100.0 2.7E-53 5.9E-58 456.5 34.6 498 2-542 495-1031(1070)
8 KOG0219 Mismatch repair ATPase 100.0 1.1E-48 2.3E-53 428.8 32.1 490 1-540 326-836 (902)
9 KOG0221 Mismatch repair ATPase 100.0 5.1E-46 1.1E-50 395.5 26.1 487 2-540 281-795 (849)
10 KOG0217 Mismatch repair ATPase 100.0 1.1E-45 2.4E-50 412.6 29.7 498 1-538 574-1089(1125)
11 KOG0220 Mismatch repair ATPase 100.0 4.8E-44 1E-48 386.8 35.7 481 1-537 294-810 (867)
12 PF00488 MutS_V: MutS domain V 100.0 1.7E-42 3.7E-47 349.7 13.3 228 273-538 1-232 (235)
13 cd03285 ABC_MSH2_euk MutS2 hom 100.0 6.7E-39 1.4E-43 321.3 16.2 196 340-537 18-220 (222)
14 cd03286 ABC_MSH6_euk MutS6 hom 100.0 4E-39 8.6E-44 321.1 12.8 190 340-531 18-218 (218)
15 cd03280 ABC_MutS2 MutS2 homolo 100.0 2.2E-38 4.8E-43 312.9 14.1 184 340-523 17-200 (200)
16 cd03287 ABC_MSH3_euk MutS3 hom 100.0 2.1E-38 4.6E-43 316.8 13.3 188 342-531 23-222 (222)
17 cd03284 ABC_MutS1 MutS1 homolo 100.0 8.3E-37 1.8E-41 305.0 15.4 194 340-534 19-215 (216)
18 cd03281 ABC_MSH5_euk MutS5 hom 100.0 4E-36 8.6E-41 299.5 14.4 183 340-523 17-213 (213)
19 cd03282 ABC_MSH4_euk MutS4 hom 100.0 5.4E-36 1.2E-40 296.3 14.2 179 342-522 21-203 (204)
20 smart00534 MUTSac ATPase domai 100.0 1.6E-35 3.6E-40 288.9 12.9 181 353-534 1-184 (185)
21 smart00533 MUTSd DNA-binding d 100.0 2.8E-34 6.1E-39 301.2 20.9 284 1-301 15-306 (308)
22 cd03243 ABC_MutS_homologs The 100.0 9.6E-35 2.1E-39 287.4 12.8 182 340-523 19-202 (202)
23 cd03283 ABC_MutS-like MutS-lik 100.0 2.6E-32 5.6E-37 269.3 15.4 181 340-523 15-199 (199)
24 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2.2E-30 4.7E-35 260.0 15.3 165 326-493 4-218 (254)
25 COG1120 FepC ABC-type cobalami 100.0 4.6E-30 9.9E-35 258.9 17.4 167 326-494 2-220 (258)
26 COG1127 Ttg2A ABC-type transpo 100.0 9.9E-30 2.1E-34 249.2 16.1 167 325-494 7-227 (263)
27 COG1126 GlnQ ABC-type polar am 100.0 1.7E-29 3.7E-34 244.0 17.1 166 326-494 2-217 (240)
28 PRK10636 putative ABC transpor 100.0 1.4E-28 3E-33 282.3 24.6 275 324-616 310-622 (638)
29 PRK11147 ABC transporter ATPas 100.0 4.1E-28 8.9E-33 278.6 22.9 272 324-616 317-626 (635)
30 COG1131 CcmA ABC-type multidru 100.0 2.4E-28 5.1E-33 254.8 15.6 168 326-495 4-219 (293)
31 COG1116 TauB ABC-type nitrate/ 100.0 7.3E-28 1.6E-32 238.9 15.7 162 326-489 3-207 (248)
32 COG4555 NatA ABC-type Na+ tran 100.0 2.6E-28 5.6E-33 232.8 11.9 166 326-494 1-214 (245)
33 PRK13537 nodulation ABC transp 100.0 1.2E-27 2.5E-32 251.4 16.0 167 326-494 7-219 (306)
34 PRK13536 nodulation factor exp 100.0 1.2E-27 2.5E-32 254.6 16.1 170 324-495 39-254 (340)
35 COG1136 SalX ABC-type antimicr 99.9 3.4E-27 7.4E-32 233.7 17.0 164 327-491 2-220 (226)
36 cd03259 ABC_Carb_Solutes_like 99.9 2.7E-27 5.8E-32 235.8 15.4 165 327-493 1-211 (213)
37 COG3638 ABC-type phosphate/pho 99.9 5.8E-27 1.3E-31 229.2 16.2 168 326-495 3-230 (258)
38 COG4152 ABC-type uncharacteriz 99.9 2E-27 4.4E-32 232.6 12.2 166 326-494 2-211 (300)
39 TIGR01288 nodI ATP-binding ABC 99.9 5.1E-27 1.1E-31 246.4 16.2 168 325-494 3-216 (303)
40 cd03226 ABC_cobalt_CbiO_domain 99.9 4E-27 8.7E-32 233.3 14.0 161 329-491 2-204 (205)
41 cd03265 ABC_DrrA DrrA is the A 99.9 6.6E-27 1.4E-31 234.2 15.6 166 327-494 1-213 (220)
42 TIGR00960 3a0501s02 Type II (G 99.9 5E-27 1.1E-31 234.4 14.6 162 327-490 2-215 (216)
43 PRK11247 ssuB aliphatic sulfon 99.9 9.7E-27 2.1E-31 238.6 16.5 169 325-494 11-215 (257)
44 cd03293 ABC_NrtD_SsuB_transpor 99.9 8.9E-27 1.9E-31 233.3 15.7 166 327-493 1-214 (220)
45 cd03214 ABC_Iron-Siderophores_ 99.9 9.9E-27 2.1E-31 226.0 15.5 154 329-492 2-177 (180)
46 cd03301 ABC_MalK_N The N-termi 99.9 1E-26 2.2E-31 231.5 15.5 165 327-493 1-211 (213)
47 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 6.8E-27 1.5E-31 233.6 14.2 162 327-490 1-217 (218)
48 cd03261 ABC_Org_Solvent_Resist 99.9 1E-26 2.2E-31 235.3 15.3 166 327-494 1-218 (235)
49 cd03268 ABC_BcrA_bacitracin_re 99.9 1E-26 2.2E-31 230.8 15.1 165 327-493 1-206 (208)
50 cd03269 ABC_putative_ATPase Th 99.9 1E-26 2.2E-31 231.2 15.1 165 327-493 1-208 (210)
51 cd03266 ABC_NatA_sodium_export 99.9 1.2E-26 2.7E-31 231.7 15.6 165 327-493 2-216 (218)
52 COG1125 OpuBA ABC-type proline 99.9 8E-27 1.7E-31 229.8 13.5 167 326-494 1-217 (309)
53 cd03218 ABC_YhbG The ABC trans 99.9 1.4E-26 3.1E-31 233.5 15.7 166 327-494 1-214 (232)
54 cd03225 ABC_cobalt_CbiO_domain 99.9 1.1E-26 2.4E-31 230.9 14.1 159 329-489 2-210 (211)
55 TIGR02673 FtsE cell division A 99.9 1.4E-26 3E-31 230.7 14.8 161 327-489 2-213 (214)
56 cd03258 ABC_MetN_methionine_tr 99.9 2.3E-26 5.1E-31 232.2 16.3 166 327-494 2-222 (233)
57 cd03298 ABC_ThiQ_thiamine_tran 99.9 2.1E-26 4.5E-31 229.0 15.5 166 327-493 1-209 (211)
58 TIGR02315 ABC_phnC phosphonate 99.9 4.6E-26 9.9E-31 231.4 17.9 166 327-494 2-227 (243)
59 COG1137 YhbG ABC-type (unclass 99.9 2.3E-27 4.9E-32 226.1 7.7 167 326-494 4-220 (243)
60 PRK09536 btuD corrinoid ABC tr 99.9 3E-26 6.5E-31 247.9 17.5 167 326-494 3-220 (402)
61 cd03219 ABC_Mj1267_LivG_branch 99.9 3.7E-26 8.1E-31 231.0 16.9 166 327-494 1-224 (236)
62 COG1122 CbiO ABC-type cobalt t 99.9 1.5E-26 3.4E-31 232.6 13.8 167 326-494 3-220 (235)
63 TIGR03522 GldA_ABC_ATP gliding 99.9 2.3E-26 5E-31 241.2 15.7 165 327-494 3-213 (301)
64 PRK11248 tauB taurine transpor 99.9 3.1E-26 6.8E-31 234.7 16.3 167 327-494 2-212 (255)
65 cd03296 ABC_CysA_sulfate_impor 99.9 3.4E-26 7.4E-31 232.0 15.9 166 327-494 3-218 (239)
66 cd03262 ABC_HisP_GlnQ_permease 99.9 2.6E-26 5.6E-31 228.5 14.7 162 327-490 1-212 (213)
67 PRK11264 putative amino-acid A 99.9 6.4E-26 1.4E-30 231.4 17.9 167 326-494 3-225 (250)
68 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 3.5E-26 7.5E-31 231.5 15.7 166 327-494 2-213 (236)
69 PRK10908 cell division protein 99.9 3.4E-26 7.4E-31 229.4 15.4 164 327-492 2-216 (222)
70 COG2884 FtsE Predicted ATPase 99.9 3.6E-26 7.9E-31 216.4 14.4 168 326-495 1-219 (223)
71 cd03256 ABC_PhnC_transporter A 99.9 7.9E-26 1.7E-30 229.3 17.8 166 327-494 1-226 (241)
72 PRK13638 cbiO cobalt transport 99.9 4.2E-26 9.2E-31 235.7 16.0 166 327-494 2-217 (271)
73 TIGR02211 LolD_lipo_ex lipopro 99.9 4.6E-26 1E-30 228.1 15.5 163 327-491 2-219 (221)
74 TIGR03258 PhnT 2-aminoethylpho 99.9 5.5E-26 1.2E-30 243.4 17.0 169 324-494 3-220 (362)
75 cd03224 ABC_TM1139_LivF_branch 99.9 4.2E-26 9E-31 228.5 15.0 166 327-494 1-213 (222)
76 PRK09493 glnQ glutamine ABC tr 99.9 5.2E-26 1.1E-30 230.7 15.9 166 327-494 2-217 (240)
77 cd03292 ABC_FtsE_transporter F 99.9 3.2E-26 6.9E-31 228.0 14.0 162 327-490 1-213 (214)
78 PRK10771 thiQ thiamine transpo 99.9 7.2E-26 1.6E-30 228.6 16.4 167 327-494 2-211 (232)
79 PRK11831 putative ABC transpor 99.9 5.9E-26 1.3E-30 234.5 15.9 167 326-494 7-225 (269)
80 cd03263 ABC_subfamily_A The AB 99.9 5.7E-26 1.2E-30 227.2 15.4 165 327-494 1-213 (220)
81 PRK11300 livG leucine/isoleuci 99.9 1.1E-25 2.5E-30 230.2 17.9 168 325-494 4-235 (255)
82 TIGR01188 drrA daunorubicin re 99.9 4.5E-26 9.7E-31 239.2 14.9 158 335-494 2-205 (302)
83 PRK11153 metN DL-methionine tr 99.9 5.8E-26 1.3E-30 242.2 15.9 166 327-494 2-222 (343)
84 PRK10584 putative ABC transpor 99.9 9E-26 1.9E-30 227.2 16.3 167 325-492 5-225 (228)
85 cd03235 ABC_Metallic_Cations A 99.9 5.3E-26 1.1E-30 226.5 14.3 159 329-489 2-208 (213)
86 cd03216 ABC_Carb_Monos_I This 99.9 2.8E-26 6E-31 219.4 11.6 150 327-493 1-162 (163)
87 COG0411 LivG ABC-type branched 99.9 2.6E-26 5.6E-31 226.3 11.7 159 326-494 4-231 (250)
88 TIGR02314 ABC_MetN D-methionin 99.9 6.9E-26 1.5E-30 240.8 15.9 167 326-494 1-222 (343)
89 TIGR03740 galliderm_ABC gallid 99.9 7.6E-26 1.7E-30 227.0 15.3 166 327-494 1-205 (223)
90 PRK13647 cbiO cobalt transport 99.9 8.7E-26 1.9E-30 233.8 16.1 167 326-494 4-219 (274)
91 cd03260 ABC_PstB_phosphate_tra 99.9 1.7E-25 3.7E-30 225.0 17.7 165 327-494 1-221 (227)
92 PRK13637 cbiO cobalt transport 99.9 1.5E-25 3.3E-30 233.5 17.7 166 327-494 3-226 (287)
93 PRK10895 lipopolysaccharide AB 99.9 9.3E-26 2E-30 229.0 15.6 167 326-494 3-218 (241)
94 COG3840 ThiQ ABC-type thiamine 99.9 8E-26 1.7E-30 212.5 13.7 160 327-495 2-212 (231)
95 COG1124 DppF ABC-type dipeptid 99.9 1.5E-25 3.2E-30 220.8 16.2 168 326-494 3-223 (252)
96 PRK11000 maltose/maltodextrin 99.9 9E-26 2E-30 242.8 15.7 168 326-494 3-215 (369)
97 PRK11650 ugpC glycerol-3-phosp 99.9 1.1E-25 2.3E-30 240.9 16.1 168 326-494 3-216 (356)
98 PRK11614 livF leucine/isoleuci 99.9 9.4E-26 2E-30 228.4 14.8 167 326-494 5-218 (237)
99 PRK13651 cobalt transporter AT 99.9 2.2E-25 4.8E-30 234.0 18.0 166 327-494 3-246 (305)
100 PRK13644 cbiO cobalt transport 99.9 1.4E-25 3.1E-30 232.2 16.3 166 327-494 2-216 (274)
101 PRK11629 lolD lipoprotein tran 99.9 1.5E-25 3.2E-30 226.5 16.0 167 326-494 5-226 (233)
102 PRK11231 fecE iron-dicitrate t 99.9 1.5E-25 3.2E-30 229.6 16.0 167 326-494 2-219 (255)
103 PRK10619 histidine/lysine/argi 99.9 2.4E-25 5.3E-30 228.3 17.6 168 325-494 4-233 (257)
104 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 6.9E-26 1.5E-30 227.7 13.3 165 327-493 23-222 (224)
105 cd03257 ABC_NikE_OppD_transpor 99.9 1.8E-25 3.8E-30 224.7 16.2 166 327-493 2-226 (228)
106 TIGR03410 urea_trans_UrtE urea 99.9 1.3E-25 2.9E-30 226.2 15.2 166 327-494 1-213 (230)
107 PRK11124 artP arginine transpo 99.9 2.8E-25 6E-30 225.7 17.6 166 327-494 3-222 (242)
108 cd03295 ABC_OpuCA_Osmoprotecti 99.9 1.5E-25 3.4E-30 227.6 15.7 166 327-494 1-217 (242)
109 PRK13548 hmuV hemin importer A 99.9 1.9E-25 4.1E-30 229.3 16.4 167 326-494 2-222 (258)
110 cd03264 ABC_drug_resistance_li 99.9 1.6E-25 3.4E-30 222.8 15.1 163 327-493 1-209 (211)
111 TIGR03411 urea_trans_UrtD urea 99.9 3.3E-25 7.2E-30 225.1 17.7 166 326-494 2-223 (242)
112 TIGR03265 PhnT2 putative 2-ami 99.9 1.4E-25 3E-30 239.8 15.6 168 326-494 4-216 (353)
113 PRK14250 phosphate ABC transpo 99.9 2.5E-25 5.4E-30 226.1 16.5 166 326-494 3-213 (241)
114 PRK13641 cbiO cobalt transport 99.9 2.1E-25 4.5E-30 232.5 16.2 166 327-494 3-226 (287)
115 PRK13634 cbiO cobalt transport 99.9 3.1E-25 6.8E-30 231.5 17.5 166 327-494 3-227 (290)
116 TIGR00972 3a0107s01c2 phosphat 99.9 3.8E-25 8.3E-30 225.4 17.7 165 327-494 2-224 (247)
117 PRK09984 phosphonate/organopho 99.9 4.1E-25 9E-30 227.2 18.1 167 326-494 4-234 (262)
118 TIGR01277 thiQ thiamine ABC tr 99.9 2.4E-25 5.2E-30 221.9 15.8 166 328-494 2-210 (213)
119 PRK13650 cbiO cobalt transport 99.9 2.5E-25 5.4E-30 231.0 16.4 167 326-494 4-221 (279)
120 PRK10575 iron-hydroxamate tran 99.9 2.6E-25 5.7E-30 229.1 16.5 168 325-494 10-229 (265)
121 PRK11432 fbpC ferric transport 99.9 2.1E-25 4.6E-30 238.1 16.1 169 325-494 5-218 (351)
122 COG3839 MalK ABC-type sugar tr 99.9 1.6E-25 3.5E-30 234.1 14.7 167 326-493 3-214 (338)
123 PRK13643 cbiO cobalt transport 99.9 2.6E-25 5.6E-30 231.9 16.0 167 326-494 1-225 (288)
124 TIGR03005 ectoine_ehuA ectoine 99.9 4.5E-25 9.8E-30 225.6 17.4 167 327-494 1-228 (252)
125 PRK13635 cbiO cobalt transport 99.9 3.3E-25 7.2E-30 230.0 16.6 167 326-494 5-221 (279)
126 COG0488 Uup ATPase components 99.9 1.4E-24 3E-29 241.1 22.6 165 326-496 3-233 (530)
127 cd03297 ABC_ModC_molybdenum_tr 99.9 4.8E-25 1E-29 219.9 17.0 160 331-493 5-212 (214)
128 PRK10253 iron-enterobactin tra 99.9 3.5E-25 7.6E-30 228.2 16.4 168 325-494 6-225 (265)
129 PRK13645 cbiO cobalt transport 99.9 4.5E-25 9.7E-30 230.2 17.4 169 325-494 5-232 (289)
130 cd03245 ABCC_bacteriocin_expor 99.9 3.4E-25 7.3E-30 221.7 15.6 164 327-493 3-218 (220)
131 cd03294 ABC_Pro_Gly_Bertaine T 99.9 2E-25 4.3E-30 230.5 14.3 166 328-494 26-242 (269)
132 COG3842 PotA ABC-type spermidi 99.9 1.9E-25 4.1E-30 234.8 14.3 168 325-493 4-217 (352)
133 PRK09544 znuC high-affinity zi 99.9 2.9E-25 6.3E-30 227.0 15.3 165 326-493 4-200 (251)
134 TIGR03873 F420-0_ABC_ATP propo 99.9 3.2E-25 6.9E-30 227.3 15.5 166 327-494 2-218 (256)
135 PRK11144 modC molybdate transp 99.9 4.6E-25 9.9E-30 236.1 17.3 166 327-494 2-210 (352)
136 PRK13543 cytochrome c biogenes 99.9 2.9E-25 6.4E-30 221.6 14.8 163 324-488 9-212 (214)
137 PRK13652 cbiO cobalt transport 99.9 4E-25 8.6E-30 229.2 16.2 167 326-494 3-219 (277)
138 COG1135 AbcC ABC-type metal io 99.9 2.6E-25 5.6E-30 225.2 14.3 167 326-494 1-223 (339)
139 PRK11701 phnK phosphonate C-P 99.9 7.1E-25 1.5E-29 224.9 17.6 168 326-494 6-233 (258)
140 PRK14268 phosphate ABC transpo 99.9 7.4E-25 1.6E-29 224.9 17.6 166 326-494 12-234 (258)
141 PRK13640 cbiO cobalt transport 99.9 5E-25 1.1E-29 229.0 16.5 168 325-494 4-224 (282)
142 PRK13547 hmuV hemin importer A 99.9 7.8E-25 1.7E-29 226.4 17.7 166 327-494 2-236 (272)
143 PRK10851 sulfate/thiosulfate t 99.9 4.3E-25 9.3E-30 236.0 16.2 167 327-494 3-218 (353)
144 PRK13538 cytochrome c biogenes 99.9 3.8E-25 8.2E-30 219.1 14.7 154 327-482 2-197 (204)
145 PRK09452 potA putrescine/sperm 99.9 3.4E-25 7.4E-30 238.2 15.5 169 325-494 13-226 (375)
146 TIGR01978 sufC FeS assembly AT 99.9 4.6E-25 9.9E-30 224.0 15.6 166 327-494 1-226 (243)
147 PRK10938 putative molybdenum t 99.9 5.1E-25 1.1E-29 246.1 17.4 167 326-494 3-216 (490)
148 TIGR03608 L_ocin_972_ABC putat 99.9 2.6E-25 5.6E-30 220.2 13.4 154 329-484 1-204 (206)
149 PRK14273 phosphate ABC transpo 99.9 9.8E-25 2.1E-29 223.3 17.9 167 325-494 6-230 (254)
150 PRK13639 cbiO cobalt transport 99.9 5.3E-25 1.2E-29 228.0 16.1 166 327-494 2-218 (275)
151 PRK13636 cbiO cobalt transport 99.9 5.7E-25 1.2E-29 228.7 16.3 167 326-494 5-223 (283)
152 PRK14242 phosphate transporter 99.9 1.1E-24 2.4E-29 222.8 18.0 166 326-494 6-229 (253)
153 cd03230 ABC_DR_subfamily_A Thi 99.9 6.6E-25 1.4E-29 211.8 15.3 147 327-490 1-172 (173)
154 PRK15112 antimicrobial peptide 99.9 6E-25 1.3E-29 226.7 16.0 167 326-494 4-231 (267)
155 cd03300 ABC_PotA_N PotA is an 99.9 6.4E-25 1.4E-29 221.8 15.8 166 327-494 1-212 (232)
156 TIGR00968 3a0106s01 sulfate AB 99.9 6.1E-25 1.3E-29 222.7 15.4 166 327-494 1-212 (237)
157 PRK14248 phosphate ABC transpo 99.9 1.4E-24 3.1E-29 223.9 18.5 167 325-494 20-244 (268)
158 PRK10247 putative ABC transpor 99.9 6.6E-25 1.4E-29 220.7 15.4 162 325-487 6-211 (225)
159 cd03246 ABCC_Protease_Secretio 99.9 7.1E-25 1.5E-29 211.6 15.0 152 327-490 1-172 (173)
160 PRK10418 nikD nickel transport 99.9 1.2E-24 2.5E-29 222.9 17.4 168 326-494 4-222 (254)
161 COG1117 PstB ABC-type phosphat 99.9 1E-24 2.2E-29 210.1 15.7 165 326-494 7-229 (253)
162 PRK13649 cbiO cobalt transport 99.9 7.1E-25 1.5E-29 227.6 15.9 166 327-494 3-226 (280)
163 PRK10744 pstB phosphate transp 99.9 1.6E-24 3.5E-29 222.5 18.3 168 324-494 11-236 (260)
164 TIGR02982 heterocyst_DevA ABC 99.9 7.2E-25 1.6E-29 219.5 15.2 164 327-491 2-219 (220)
165 PRK13633 cobalt transporter AT 99.9 8.6E-25 1.9E-29 227.1 16.4 167 326-494 4-225 (280)
166 PRK15056 manganese/iron transp 99.9 1.4E-24 3E-29 224.6 17.7 166 326-494 6-222 (272)
167 PRK13632 cbiO cobalt transport 99.9 9E-25 1.9E-29 225.9 16.2 167 326-494 7-223 (271)
168 PRK11607 potG putrescine trans 99.9 7.1E-25 1.5E-29 236.0 16.0 170 324-494 17-231 (377)
169 PRK13648 cbiO cobalt transport 99.9 9E-25 2E-29 225.6 16.1 167 326-494 7-223 (269)
170 PRK13646 cbiO cobalt transport 99.9 9.6E-25 2.1E-29 227.4 16.4 166 327-494 3-227 (286)
171 PRK10070 glycine betaine trans 99.9 1.1E-24 2.5E-29 235.5 17.5 165 329-494 31-246 (400)
172 PRK11022 dppD dipeptide transp 99.9 1.3E-24 2.8E-29 230.3 17.3 167 326-494 3-235 (326)
173 PRK15439 autoinducer 2 ABC tra 99.9 6.1E-25 1.3E-29 246.5 15.7 167 326-494 11-221 (510)
174 PRK13631 cbiO cobalt transport 99.9 1.2E-24 2.7E-29 229.7 17.1 168 325-494 20-257 (320)
175 PRK14247 phosphate ABC transpo 99.9 1.8E-24 4E-29 220.7 17.8 166 326-494 3-226 (250)
176 PRK13549 xylose transporter AT 99.9 8.6E-25 1.9E-29 245.2 16.7 166 326-493 5-223 (506)
177 TIGR02769 nickel_nikE nickel i 99.9 1.1E-24 2.4E-29 224.4 16.2 168 326-494 2-232 (265)
178 TIGR02323 CP_lyasePhnK phospho 99.9 1.7E-24 3.6E-29 221.5 17.2 168 326-494 3-230 (253)
179 cd03267 ABC_NatA_like Similar 99.9 7.4E-25 1.6E-29 221.9 14.4 159 334-493 29-234 (236)
180 PRK14274 phosphate ABC transpo 99.9 2.5E-24 5.5E-29 221.0 18.4 168 324-494 10-235 (259)
181 TIGR02142 modC_ABC molybdenum 99.9 1.3E-24 2.8E-29 232.9 16.9 162 331-494 4-213 (354)
182 PRK14245 phosphate ABC transpo 99.9 2.7E-24 6E-29 219.5 18.4 166 326-494 3-226 (250)
183 cd03231 ABC_CcmA_heme_exporter 99.9 8E-25 1.7E-29 216.3 14.0 157 327-485 1-197 (201)
184 PRK14235 phosphate transporter 99.9 2.5E-24 5.5E-29 222.0 18.2 168 324-494 17-243 (267)
185 cd03215 ABC_Carb_Monos_II This 99.9 1.5E-24 3.2E-29 211.1 15.4 151 325-490 3-181 (182)
186 PRK13539 cytochrome c biogenes 99.9 1E-24 2.2E-29 216.6 14.4 158 326-486 2-198 (207)
187 cd03254 ABCC_Glucan_exporter_l 99.9 1.6E-24 3.5E-29 218.1 16.0 166 326-494 2-218 (229)
188 PRK14240 phosphate transporter 99.9 2.9E-24 6.3E-29 219.3 18.1 166 326-494 3-226 (250)
189 PRK10762 D-ribose transporter 99.9 8.7E-25 1.9E-29 244.9 15.6 166 326-493 4-221 (501)
190 PRK14267 phosphate ABC transpo 99.9 2.4E-24 5.1E-29 220.3 17.5 166 326-494 4-229 (253)
191 cd03229 ABC_Class3 This class 99.9 6.5E-25 1.4E-29 212.8 12.6 153 327-489 1-177 (178)
192 PRK10636 putative ABC transpor 99.9 6.3E-24 1.4E-28 243.8 22.9 164 327-495 2-228 (638)
193 PRK14256 phosphate ABC transpo 99.9 3.1E-24 6.7E-29 219.4 18.1 167 325-494 3-228 (252)
194 PRK14275 phosphate ABC transpo 99.9 3.1E-24 6.6E-29 223.6 18.2 169 323-494 36-262 (286)
195 cd03247 ABCC_cytochrome_bd The 99.9 2.1E-24 4.7E-29 209.1 15.9 152 327-493 1-176 (178)
196 TIGR03269 met_CoM_red_A2 methy 99.9 1.9E-24 4.1E-29 243.2 17.9 166 327-493 1-249 (520)
197 PRK11308 dppF dipeptide transp 99.9 2.3E-24 4.9E-29 228.4 17.4 168 326-494 5-236 (327)
198 cd03252 ABCC_Hemolysin The ABC 99.9 1.6E-24 3.6E-29 219.3 15.2 165 327-494 1-217 (237)
199 PRK09700 D-allose transporter 99.9 1.9E-24 4.2E-29 242.6 17.4 167 326-494 5-226 (510)
200 COG0488 Uup ATPase components 99.9 7.1E-24 1.5E-28 235.5 21.6 168 323-496 318-518 (530)
201 PRK14239 phosphate transporter 99.9 3.8E-24 8.2E-29 218.6 17.9 166 326-494 5-228 (252)
202 PRK15079 oligopeptide ABC tran 99.9 2.6E-24 5.7E-29 228.2 17.1 168 325-494 7-243 (331)
203 PRK14269 phosphate ABC transpo 99.9 3.9E-24 8.5E-29 217.9 17.7 166 326-494 2-222 (246)
204 PRK14237 phosphate transporter 99.9 4.4E-24 9.6E-29 220.2 18.3 167 325-494 19-243 (267)
205 PRK13540 cytochrome c biogenes 99.9 1.4E-24 3E-29 214.4 13.8 155 327-483 2-196 (200)
206 cd03217 ABC_FeS_Assembly ABC-t 99.9 1.3E-24 2.9E-29 214.6 13.6 158 327-494 1-186 (200)
207 PRK14262 phosphate ABC transpo 99.9 4.6E-24 9.9E-29 217.8 17.9 166 326-494 3-226 (250)
208 PRK14255 phosphate ABC transpo 99.9 4.9E-24 1.1E-28 217.9 18.1 167 325-494 4-228 (252)
209 cd03228 ABCC_MRP_Like The MRP 99.9 2.5E-24 5.3E-29 207.4 14.8 150 327-489 1-170 (171)
210 cd03213 ABCG_EPDR ABCG transpo 99.9 3.9E-24 8.5E-29 210.3 16.5 158 326-493 3-192 (194)
211 cd03251 ABCC_MsbA MsbA is an e 99.9 1.7E-24 3.7E-29 218.6 14.4 165 327-494 1-217 (234)
212 PRK09580 sufC cysteine desulfu 99.9 2.7E-24 5.8E-29 219.1 15.9 165 327-494 2-227 (248)
213 PRK10419 nikE nickel transport 99.9 2.9E-24 6.2E-29 221.8 16.2 168 326-494 3-233 (268)
214 cd03232 ABC_PDR_domain2 The pl 99.9 4E-24 8.6E-29 209.9 16.4 158 326-493 3-190 (192)
215 cd03299 ABC_ModC_like Archeal 99.9 2.8E-24 6E-29 217.6 15.7 166 327-494 1-211 (235)
216 cd03248 ABCC_TAP TAP, the Tran 99.9 1.8E-24 4E-29 217.4 14.3 164 324-490 9-225 (226)
217 COG0410 LivF ABC-type branched 99.9 4.6E-24 1E-28 208.8 16.5 167 326-494 3-218 (237)
218 TIGR01186 proV glycine betaine 99.9 2.7E-24 5.8E-29 230.0 16.3 159 335-494 2-211 (363)
219 cd03244 ABCC_MRP_domain2 Domai 99.9 3.3E-24 7.2E-29 214.7 15.8 165 326-494 2-218 (221)
220 PRK14270 phosphate ABC transpo 99.9 6.5E-24 1.4E-28 216.9 18.2 166 326-494 4-227 (251)
221 PRK14241 phosphate transporter 99.9 5.4E-24 1.2E-28 218.4 17.5 166 326-494 4-234 (258)
222 PRK15093 antimicrobial peptide 99.9 5.7E-24 1.2E-28 225.8 18.2 167 326-494 3-240 (330)
223 PRK14249 phosphate ABC transpo 99.9 6.1E-24 1.3E-28 217.1 17.7 166 326-494 4-227 (251)
224 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 2.6E-24 5.7E-29 217.9 14.8 165 327-494 1-218 (238)
225 PRK13642 cbiO cobalt transport 99.9 3.9E-24 8.5E-29 221.8 16.4 167 326-494 4-221 (277)
226 PRK14271 phosphate ABC transpo 99.9 8.9E-24 1.9E-28 219.0 18.9 167 325-494 20-243 (276)
227 TIGR01189 ccmA heme ABC export 99.9 2.1E-24 4.5E-29 212.7 13.3 147 327-475 1-188 (198)
228 PRK14253 phosphate ABC transpo 99.9 9E-24 1.9E-28 215.5 18.3 166 326-494 3-225 (249)
229 PRK14272 phosphate ABC transpo 99.9 6.9E-24 1.5E-28 216.7 17.4 166 326-494 4-228 (252)
230 PRK14251 phosphate ABC transpo 99.9 7.4E-24 1.6E-28 216.4 17.6 166 326-494 4-227 (251)
231 PRK13545 tagH teichoic acids e 99.9 3.1E-24 6.7E-29 235.5 15.8 167 326-494 21-224 (549)
232 cd03250 ABCC_MRP_domain1 Domai 99.9 3.7E-24 8E-29 211.9 14.8 162 327-489 1-203 (204)
233 COG4586 ABC-type uncharacteriz 99.9 2.3E-24 5.1E-29 214.3 13.1 152 342-494 42-238 (325)
234 PRK13549 xylose transporter AT 99.9 4.5E-24 9.8E-29 239.4 17.2 167 326-494 259-486 (506)
235 PRK14254 phosphate ABC transpo 99.9 8.4E-24 1.8E-28 220.2 18.0 169 323-494 36-261 (285)
236 PRK14244 phosphate ABC transpo 99.9 8.5E-24 1.8E-28 216.0 17.6 164 328-494 7-229 (251)
237 COG1118 CysA ABC-type sulfate/ 99.9 2.3E-24 5.1E-29 217.8 13.2 167 326-493 2-218 (345)
238 TIGR02633 xylG D-xylose ABC tr 99.9 3.9E-24 8.5E-29 239.5 16.3 165 327-493 2-221 (500)
239 PRK14259 phosphate ABC transpo 99.9 1E-23 2.2E-28 217.8 18.1 161 324-488 11-228 (269)
240 cd03253 ABCC_ATM1_transporter 99.9 4.6E-24 9.9E-29 215.8 15.1 165 327-494 1-216 (236)
241 PRK11288 araG L-arabinose tran 99.9 3.4E-24 7.4E-29 240.1 15.4 166 326-493 4-220 (501)
242 cd03223 ABCD_peroxisomal_ALDP 99.9 5.8E-24 1.2E-28 204.0 14.7 149 327-489 1-163 (166)
243 PRK14238 phosphate transporter 99.9 1.1E-23 2.5E-28 217.7 18.0 168 324-494 22-247 (271)
244 TIGR01184 ntrCD nitrate transp 99.9 3.8E-24 8.3E-29 215.9 14.1 152 342-494 3-196 (230)
245 PRK13541 cytochrome c biogenes 99.9 3.4E-24 7.4E-29 210.8 13.2 153 327-481 2-190 (195)
246 CHL00131 ycf16 sulfate ABC tra 99.9 8.3E-24 1.8E-28 216.1 16.4 167 326-494 7-233 (252)
247 PRK09473 oppD oligopeptide tra 99.9 9.9E-24 2.1E-28 223.8 17.5 168 325-494 11-243 (330)
248 PRK14265 phosphate ABC transpo 99.9 1.8E-23 4E-28 216.4 18.8 167 325-494 19-250 (274)
249 PRK14236 phosphate transporter 99.9 1.5E-23 3.2E-28 216.9 18.0 167 325-494 24-248 (272)
250 PRK15134 microcin C ABC transp 99.9 7.5E-24 1.6E-28 238.8 16.9 167 326-494 5-238 (529)
251 cd03234 ABCG_White The White s 99.9 7.3E-24 1.6E-28 213.2 15.0 166 326-493 3-224 (226)
252 PRK14258 phosphate ABC transpo 99.9 1.7E-23 3.6E-28 215.3 17.9 167 326-494 7-237 (261)
253 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 3.3E-24 7.2E-29 200.9 11.2 140 327-490 1-144 (144)
254 PRK03695 vitamin B12-transport 99.9 1.1E-23 2.5E-28 214.9 16.1 162 328-494 2-214 (248)
255 PRK14261 phosphate ABC transpo 99.9 1.7E-23 3.7E-28 214.0 17.4 166 326-494 6-229 (253)
256 COG4559 ABC-type hemin transpo 99.9 8.2E-24 1.8E-28 203.6 13.9 166 327-494 2-222 (259)
257 cd03289 ABCC_CFTR2 The CFTR su 99.9 1.8E-23 4E-28 216.2 17.6 165 326-494 2-217 (275)
258 PRK13546 teichoic acids export 99.9 1.1E-23 2.4E-28 216.8 15.8 151 342-494 42-224 (264)
259 TIGR02633 xylG D-xylose ABC tr 99.9 1.1E-23 2.3E-28 236.0 17.0 167 326-494 257-484 (500)
260 TIGR02324 CP_lyasePhnL phospho 99.9 9.9E-24 2.1E-28 211.8 15.0 158 327-486 2-222 (224)
261 PRK10982 galactose/methyl gala 99.9 5.8E-24 1.3E-28 237.6 14.4 163 329-493 1-214 (491)
262 PRK10938 putative molybdenum t 99.9 8.4E-24 1.8E-28 236.3 15.7 169 325-495 259-485 (490)
263 PRK15064 ABC transporter ATP-b 99.9 9.9E-24 2.2E-28 237.9 16.1 161 327-492 2-231 (530)
264 PRK15064 ABC transporter ATP-b 99.9 8E-24 1.7E-28 238.7 15.2 163 325-492 318-514 (530)
265 PRK14246 phosphate ABC transpo 99.9 2E-23 4.4E-28 214.1 16.7 166 326-494 10-233 (257)
266 PRK14260 phosphate ABC transpo 99.9 3.2E-23 6.8E-28 212.9 18.0 166 326-494 7-235 (259)
267 cd03222 ABC_RNaseL_inhibitor T 99.9 3.1E-24 6.8E-29 207.6 9.9 143 330-491 4-150 (177)
268 PRK14252 phosphate ABC transpo 99.9 3.6E-23 7.8E-28 213.2 18.3 167 325-494 15-241 (265)
269 cd03288 ABCC_SUR2 The SUR doma 99.9 2E-23 4.3E-28 214.2 16.1 167 324-494 17-235 (257)
270 PRK14243 phosphate transporter 99.9 3.9E-23 8.4E-28 212.9 18.2 166 326-494 10-240 (264)
271 cd03369 ABCC_NFT1 Domain 2 of 99.9 2.2E-23 4.9E-28 206.7 15.8 162 325-493 5-203 (207)
272 COG4604 CeuD ABC-type enteroch 99.9 5.2E-24 1.1E-28 202.7 10.6 167 326-494 1-217 (252)
273 cd03238 ABC_UvrA The excision 99.9 8E-24 1.7E-28 204.6 12.2 143 342-491 13-166 (176)
274 PRK09700 D-allose transporter 99.9 2E-23 4.4E-28 234.3 17.3 166 326-494 265-490 (510)
275 PRK14266 phosphate ABC transpo 99.9 4.5E-23 9.8E-28 210.5 18.2 166 326-494 3-226 (250)
276 PRK10261 glutathione transport 99.9 2.4E-23 5.3E-28 238.6 17.8 168 325-494 312-545 (623)
277 PRK15134 microcin C ABC transp 99.9 3.4E-23 7.4E-28 233.5 18.2 167 326-494 275-507 (529)
278 PRK14264 phosphate ABC transpo 99.9 4.1E-23 8.9E-28 217.0 17.4 169 323-494 42-281 (305)
279 TIGR02770 nickel_nikD nickel i 99.9 3E-23 6.5E-28 209.3 15.7 151 342-494 4-207 (230)
280 PRK11147 ABC transporter ATPas 99.9 1.5E-23 3.2E-28 241.1 15.1 162 326-494 3-234 (635)
281 cd03233 ABC_PDR_domain1 The pl 99.9 3.9E-23 8.4E-28 204.5 16.1 163 327-493 4-200 (202)
282 COG1119 ModF ABC-type molybden 99.9 2.7E-23 5.8E-28 205.0 14.5 167 326-494 31-254 (257)
283 PRK10261 glutathione transport 99.9 2.7E-23 5.9E-28 238.2 16.8 167 325-493 11-249 (623)
284 TIGR03415 ABC_choXWV_ATP choli 99.9 2E-23 4.4E-28 224.3 14.7 164 330-494 28-246 (382)
285 PRK13409 putative ATPase RIL; 99.9 2.1E-23 4.5E-28 236.7 15.4 162 326-488 340-529 (590)
286 cd03290 ABCC_SUR1_N The SUR do 99.9 2.9E-23 6.3E-28 207.6 14.5 162 328-490 2-218 (218)
287 TIGR03269 met_CoM_red_A2 methy 99.9 3.1E-23 6.7E-28 233.4 16.4 167 326-494 279-509 (520)
288 TIGR01166 cbiO cobalt transpor 99.9 1.6E-23 3.6E-28 204.9 12.2 133 342-476 10-189 (190)
289 PRK11819 putative ABC transpor 99.9 4.8E-23 1E-27 233.5 16.7 161 326-492 6-239 (556)
290 cd00267 ABC_ATPase ABC (ATP-bi 99.9 3.6E-23 7.8E-28 196.4 12.7 144 329-489 2-156 (157)
291 COG1129 MglA ABC-type sugar tr 99.9 5E-23 1.1E-27 223.8 15.5 159 326-494 8-226 (500)
292 cd03237 ABC_RNaseL_inhibitor_d 99.9 5.8E-23 1.2E-27 209.4 15.0 145 344-489 19-192 (246)
293 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 4.6E-23 9.9E-28 233.5 15.5 163 325-492 321-520 (552)
294 PRK14257 phosphate ABC transpo 99.9 1.5E-22 3.2E-27 214.6 18.4 168 324-494 78-305 (329)
295 PLN03073 ABC transporter F fam 99.9 5.2E-23 1.1E-27 237.7 16.0 164 324-492 506-703 (718)
296 PRK11819 putative ABC transpor 99.9 5.5E-23 1.2E-27 233.0 15.6 163 325-492 323-522 (556)
297 cd03291 ABCC_CFTR1 The CFTR su 99.9 1.5E-22 3.3E-27 210.1 17.3 169 323-494 36-239 (282)
298 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 7.7E-23 1.7E-27 231.7 16.4 163 326-494 4-239 (552)
299 PRK14263 phosphate ABC transpo 99.9 1.8E-22 3.9E-27 207.6 17.6 166 326-494 8-237 (261)
300 PRK15439 autoinducer 2 ABC tra 99.9 8.2E-23 1.8E-27 229.4 16.2 163 326-494 268-484 (510)
301 TIGR01257 rim_protein retinal- 99.9 6E-23 1.3E-27 254.0 16.4 169 324-494 1935-2151(2272)
302 PRK11288 araG L-arabinose tran 99.9 1.3E-22 2.8E-27 227.3 17.2 163 327-494 258-477 (501)
303 PRK10982 galactose/methyl gala 99.9 7.7E-23 1.7E-27 228.6 14.8 166 326-494 250-472 (491)
304 COG0444 DppD ABC-type dipeptid 99.9 1.5E-22 3.3E-27 207.7 15.1 166 327-494 2-235 (316)
305 COG1123 ATPase components of v 99.9 1.7E-22 3.7E-27 221.1 16.4 167 326-493 5-235 (539)
306 cd03236 ABC_RNaseL_inhibitor_d 99.9 1.3E-22 2.8E-27 207.8 14.6 154 330-487 4-213 (255)
307 cd03227 ABC_Class2 ABC-type Cl 99.9 6E-23 1.3E-27 196.2 11.3 128 341-487 12-154 (162)
308 COG4598 HisP ABC-type histidin 99.9 1.5E-22 3.2E-27 190.0 12.1 166 326-493 6-232 (256)
309 COG4181 Predicted ABC-type tra 99.9 1.8E-22 3.9E-27 188.2 12.4 165 326-492 6-225 (228)
310 PRK15177 Vi polysaccharide exp 99.9 2.5E-22 5.5E-27 200.4 14.2 148 342-494 5-184 (213)
311 TIGR03771 anch_rpt_ABC anchore 99.9 3.3E-22 7.1E-27 200.9 14.9 147 345-494 1-193 (223)
312 TIGR01257 rim_protein retinal- 99.9 2.1E-22 4.5E-27 249.3 16.0 168 324-494 926-1141(2272)
313 PRK10762 D-ribose transporter 99.9 2.6E-22 5.6E-27 224.9 14.9 163 326-494 257-476 (501)
314 PLN03073 ABC transporter F fam 99.9 4.5E-22 9.8E-27 229.9 17.1 165 325-494 176-422 (718)
315 TIGR01194 cyc_pep_trnsptr cycl 99.9 4.9E-22 1.1E-26 225.3 16.6 169 325-494 336-551 (555)
316 PRK10522 multidrug transporter 99.9 5.1E-22 1.1E-26 224.8 16.5 168 325-494 321-530 (547)
317 COG2274 SunT ABC-type bacterio 99.9 2.5E-22 5.4E-27 230.0 14.1 167 324-494 469-688 (709)
318 COG3845 ABC-type uncharacteriz 99.9 4.9E-22 1.1E-26 212.2 15.0 158 326-493 4-220 (501)
319 COG4107 PhnK ABC-type phosphon 99.9 5.5E-22 1.2E-26 185.2 13.1 165 327-493 7-232 (258)
320 COG0396 sufC Cysteine desulfur 99.9 1.6E-21 3.4E-26 190.5 16.7 167 326-494 3-226 (251)
321 COG4987 CydC ABC-type transpor 99.9 5.6E-22 1.2E-26 213.3 14.5 158 326-494 336-553 (573)
322 COG4175 ProV ABC-type proline/ 99.9 7.1E-22 1.5E-26 200.1 14.1 150 342-493 46-245 (386)
323 TIGR01842 type_I_sec_PrtD type 99.9 9.9E-22 2.1E-26 222.4 16.1 168 325-494 315-534 (544)
324 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 1.1E-21 2.4E-26 227.9 16.5 164 325-494 450-665 (686)
325 COG1123 ATPase components of v 99.9 1.4E-21 3E-26 214.0 16.3 170 324-494 278-511 (539)
326 COG4525 TauB ABC-type taurine 99.9 7.2E-22 1.6E-26 187.8 11.8 160 327-489 4-209 (259)
327 KOG0927 Predicted transporter 99.9 3.9E-22 8.4E-27 213.9 11.0 164 325-496 388-589 (614)
328 PRK13409 putative ATPase RIL; 99.9 1.3E-21 2.8E-26 222.1 15.8 153 331-488 78-286 (590)
329 PLN03211 ABC transporter G-25; 99.9 1.1E-21 2.4E-26 225.4 15.3 165 328-494 70-288 (659)
330 PRK11160 cysteine/glutathione 99.9 1.7E-21 3.7E-26 221.7 16.6 166 325-494 337-554 (574)
331 COG4619 ABC-type uncharacteriz 99.9 5E-22 1.1E-26 184.7 9.9 149 342-491 21-212 (223)
332 PRK13657 cyclic beta-1,2-gluca 99.9 1.4E-21 3.1E-26 223.1 15.9 166 325-494 333-550 (588)
333 PRK11176 lipid transporter ATP 99.9 1.6E-21 3.5E-26 222.3 16.1 166 325-494 340-559 (582)
334 KOG0057 Mitochondrial Fe/S clu 99.9 2.2E-21 4.7E-26 208.9 15.6 167 324-494 349-566 (591)
335 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 1.2E-21 2.5E-26 228.5 14.7 164 325-494 476-692 (710)
336 COG4161 ArtP ABC-type arginine 99.9 1.9E-21 4.2E-26 179.5 13.0 166 327-494 3-222 (242)
337 TIGR02203 MsbA_lipidA lipid A 99.9 1.9E-21 4.2E-26 221.2 15.7 166 325-493 329-547 (571)
338 TIGR03375 type_I_sec_LssB type 99.9 2.1E-21 4.6E-26 225.7 16.4 166 325-494 462-680 (694)
339 TIGR01192 chvA glucan exporter 99.9 2.3E-21 5.1E-26 221.0 16.0 167 325-494 333-550 (585)
340 COG1134 TagH ABC-type polysacc 99.9 1.9E-21 4E-26 192.2 13.1 144 342-495 45-229 (249)
341 PRK11174 cysteine/glutathione 99.9 2.3E-21 4.9E-26 221.5 15.6 164 325-493 348-563 (588)
342 PRK10535 macrolide transporter 99.9 3.6E-21 7.8E-26 221.6 16.2 167 326-494 4-224 (648)
343 COG4133 CcmA ABC-type transpor 99.9 2E-21 4.3E-26 184.3 11.5 137 327-474 3-190 (209)
344 PRK10790 putative multidrug tr 99.9 3.5E-21 7.6E-26 220.0 15.7 166 325-494 339-555 (592)
345 PRK10789 putative multidrug tr 99.9 4.6E-21 1E-25 218.0 16.6 166 325-494 312-530 (569)
346 TIGR01193 bacteriocin_ABC ABC- 99.9 5.1E-21 1.1E-25 223.0 16.3 166 325-494 472-689 (708)
347 cd03270 ABC_UvrA_I The excisio 99.9 8.9E-21 1.9E-25 191.0 15.6 150 342-493 13-224 (226)
348 TIGR00958 3a01208 Conjugate Tr 99.9 5.6E-21 1.2E-25 222.5 15.9 164 325-494 477-694 (711)
349 TIGR02204 MsbA_rel ABC transpo 99.8 5.6E-21 1.2E-25 217.7 15.3 166 325-494 336-555 (576)
350 COG4608 AppF ABC-type oligopep 99.8 5.9E-21 1.3E-25 192.1 13.0 159 326-494 4-191 (268)
351 TIGR01846 type_I_sec_HlyB type 99.8 7.2E-21 1.6E-25 221.3 15.8 166 325-494 454-672 (694)
352 TIGR00954 3a01203 Peroxysomal 99.8 8.2E-21 1.8E-25 218.9 15.6 158 325-487 450-652 (659)
353 COG4988 CydD ABC-type transpor 99.8 9.8E-21 2.1E-25 206.6 15.2 165 326-494 320-535 (559)
354 COG4674 Uncharacterized ABC-ty 99.8 3E-21 6.4E-26 183.7 9.2 165 326-493 5-226 (249)
355 COG4148 ModC ABC-type molybdat 99.8 4.5E-21 9.7E-26 191.4 10.3 162 331-494 5-210 (352)
356 TIGR02857 CydD thiol reductant 99.8 9.6E-21 2.1E-25 213.6 14.5 158 325-485 319-528 (529)
357 KOG0062 ATPase component of AB 99.8 3.2E-21 7E-26 205.8 9.0 167 326-497 80-279 (582)
358 TIGR01187 potA spermidine/putr 99.8 1.1E-20 2.4E-25 200.3 12.5 139 356-494 1-182 (325)
359 KOG0927 Predicted transporter 99.8 2.1E-19 4.6E-24 193.0 20.1 157 327-496 76-302 (614)
360 COG1101 PhnK ABC-type uncharac 99.8 6.8E-20 1.5E-24 177.0 13.1 153 342-495 24-231 (263)
361 TIGR02868 CydC thiol reductant 99.8 5.1E-20 1.1E-24 207.8 14.3 146 325-474 333-529 (529)
362 TIGR00956 3a01205 Pleiotropic 99.8 9.6E-20 2.1E-24 224.4 17.3 169 324-494 757-985 (1394)
363 COG1132 MdlB ABC-type multidru 99.8 1.3E-19 2.8E-24 206.2 15.6 165 325-494 327-544 (567)
364 cd03278 ABC_SMC_barmotin Barmo 99.8 1.1E-19 2.5E-24 179.1 12.9 138 342-486 15-188 (197)
365 KOG0059 Lipid exporter ABCA1 a 99.8 1E-19 2.2E-24 215.6 13.6 167 325-494 563-779 (885)
366 COG4778 PhnL ABC-type phosphon 99.8 1.4E-19 3E-24 168.7 10.4 152 326-487 4-226 (235)
367 PTZ00265 multidrug resistance 99.8 1.8E-19 3.9E-24 222.3 14.8 162 326-490 382-656 (1466)
368 PLN03140 ABC transporter G fam 99.8 4.4E-19 9.5E-24 218.2 17.9 167 326-494 867-1102(1470)
369 TIGR00955 3a01204 The Eye Pigm 99.8 2.9E-19 6.3E-24 204.9 14.8 152 342-495 43-249 (617)
370 PTZ00265 multidrug resistance 99.8 3.6E-19 7.8E-24 219.7 16.3 165 325-492 1164-1441(1466)
371 COG4136 ABC-type uncharacteriz 99.8 2.8E-19 6.1E-24 163.5 11.1 149 326-476 2-197 (213)
372 KOG0055 Multidrug/pheromone ex 99.8 2.9E-19 6.4E-24 208.8 14.1 161 323-494 347-568 (1228)
373 KOG0058 Peptide exporter, ABC 99.8 3.4E-19 7.4E-24 198.2 13.3 167 324-494 463-683 (716)
374 COG4618 ArpD ABC-type protease 99.8 9E-19 2E-23 187.2 15.4 168 324-494 332-552 (580)
375 cd03279 ABC_sbcCD SbcCD and ot 99.8 1.2E-18 2.6E-23 173.9 14.9 160 327-490 6-210 (213)
376 COG4172 ABC-type uncharacteriz 99.8 1.4E-18 3.1E-23 180.9 14.7 166 326-493 6-238 (534)
377 PLN03232 ABC transporter C fam 99.8 9.1E-19 2E-23 217.6 15.9 166 325-494 1233-1450(1495)
378 cd03271 ABC_UvrA_II The excisi 99.8 2.5E-18 5.5E-23 176.0 16.2 96 398-494 152-258 (261)
379 PLN03130 ABC transporter C fam 99.8 1E-18 2.2E-23 217.7 15.9 167 324-494 1235-1453(1622)
380 PTZ00243 ABC transporter; Prov 99.8 1.7E-18 3.7E-23 215.3 17.5 167 324-494 1306-1525(1560)
381 PLN03130 ABC transporter C fam 99.8 2.3E-18 5E-23 214.5 18.1 168 325-494 613-820 (1622)
382 PLN03232 ABC transporter C fam 99.8 1.8E-18 3.8E-23 215.1 16.8 167 325-494 613-820 (1495)
383 TIGR01271 CFTR_protein cystic 99.8 2.4E-18 5.1E-23 213.7 17.8 166 325-494 1216-1432(1490)
384 TIGR00957 MRP_assoc_pro multi 99.8 1.8E-18 3.8E-23 215.4 15.5 169 325-494 635-842 (1522)
385 COG4172 ABC-type uncharacteriz 99.8 4.5E-18 9.8E-23 177.2 15.5 169 324-494 274-508 (534)
386 KOG0066 eIF2-interacting prote 99.8 8.1E-19 1.7E-23 183.3 9.5 153 326-491 586-779 (807)
387 PTZ00243 ABC transporter; Prov 99.8 3E-18 6.4E-23 213.1 15.8 158 335-494 669-862 (1560)
388 TIGR00957 MRP_assoc_pro multi 99.8 3.1E-18 6.7E-23 213.2 15.8 167 324-494 1282-1500(1522)
389 TIGR01271 CFTR_protein cystic 99.8 3.1E-18 6.7E-23 212.7 14.8 166 326-494 428-628 (1490)
390 cd03272 ABC_SMC3_euk Eukaryoti 99.8 7.8E-18 1.7E-22 171.0 14.9 77 408-486 152-233 (243)
391 cd03274 ABC_SMC4_euk Eukaryoti 99.7 4.2E-18 9.1E-23 169.8 10.8 151 327-487 6-203 (212)
392 PLN03140 ABC transporter G fam 99.7 5.4E-18 1.2E-22 208.6 12.7 151 342-494 183-419 (1470)
393 COG4615 PvdE ABC-type sideroph 99.7 1E-17 2.2E-22 174.0 11.4 160 326-494 322-529 (546)
394 COG4167 SapF ABC-type antimicr 99.7 2.2E-17 4.9E-22 155.7 12.4 167 327-494 5-231 (267)
395 cd03240 ABC_Rad50 The catalyti 99.7 8.7E-18 1.9E-22 166.6 9.6 142 344-488 17-197 (204)
396 KOG0062 ATPase component of AB 99.7 1.5E-17 3.3E-22 177.9 11.6 156 326-494 362-560 (582)
397 KOG0061 Transporter, ABC super 99.7 5.6E-17 1.2E-21 184.9 16.3 151 342-495 48-253 (613)
398 COG4138 BtuD ABC-type cobalami 99.7 7.6E-18 1.7E-22 157.8 7.0 152 341-494 16-213 (248)
399 cd03273 ABC_SMC2_euk Eukaryoti 99.7 8.5E-17 1.8E-21 164.5 15.3 79 406-486 158-241 (251)
400 cd03275 ABC_SMC1_euk Eukaryoti 99.7 6.1E-17 1.3E-21 165.2 13.8 76 410-486 151-231 (247)
401 TIGR00956 3a01205 Pleiotropic 99.7 2.6E-17 5.7E-22 202.9 12.8 151 342-494 79-292 (1394)
402 KOG0056 Heavy metal exporter H 99.7 5.4E-17 1.2E-21 171.9 11.7 167 323-494 534-753 (790)
403 cd03276 ABC_SMC6_euk Eukaryoti 99.7 2.8E-16 6.2E-21 155.1 14.1 145 342-488 14-190 (198)
404 KOG0055 Multidrug/pheromone ex 99.7 2.1E-16 4.5E-21 185.2 13.3 166 324-494 985-1205(1228)
405 COG1245 Predicted ATPase, RNas 99.7 3.2E-16 6.9E-21 165.6 12.5 160 327-487 343-530 (591)
406 PF00005 ABC_tran: ABC transpo 99.7 9.7E-17 2.1E-21 148.2 6.0 100 342-442 3-137 (137)
407 TIGR00630 uvra excinuclease AB 99.6 2.3E-15 5E-20 177.1 17.1 95 399-494 812-917 (924)
408 KOG0066 eIF2-interacting prote 99.6 7.3E-16 1.6E-20 161.4 10.6 164 327-495 265-491 (807)
409 PRK00349 uvrA excinuclease ABC 99.6 3.5E-15 7.6E-20 175.8 17.2 95 399-494 814-919 (943)
410 COG1245 Predicted ATPase, RNas 99.6 4.8E-15 1E-19 156.8 13.8 124 348-481 98-281 (591)
411 KOG2355 Predicted ABC-type tra 99.6 3.5E-15 7.6E-20 143.3 10.9 167 324-494 11-229 (291)
412 PRK00635 excinuclease ABC subu 99.6 6.3E-15 1.4E-19 180.7 16.0 95 398-493 792-897 (1809)
413 cd03239 ABC_SMC_head The struc 99.6 1E-14 2.2E-19 141.6 13.8 131 352-487 23-171 (178)
414 COG4178 ABC-type uncharacteriz 99.6 8.5E-15 1.8E-19 162.8 13.8 159 325-486 391-586 (604)
415 cd03277 ABC_SMC5_euk Eukaryoti 99.6 5.7E-15 1.2E-19 147.4 10.5 81 408-489 120-210 (213)
416 KOG0054 Multidrug resistance-a 99.5 4E-14 8.7E-19 169.7 15.3 167 324-493 1136-1353(1381)
417 KOG0054 Multidrug resistance-a 99.5 4.8E-14 1E-18 169.0 15.2 170 323-494 515-723 (1381)
418 KOG0065 Pleiotropic drug resis 99.5 3.9E-14 8.5E-19 166.3 8.8 151 342-494 809-1013(1391)
419 COG1129 MglA ABC-type sugar tr 99.5 2E-13 4.3E-18 149.2 13.2 152 341-494 276-482 (500)
420 COG2401 ABC-type ATPase fused 99.5 1.4E-13 3.1E-18 144.1 10.7 147 342-490 401-586 (593)
421 COG5265 ATM1 ABC-type transpor 99.5 2.6E-13 5.6E-18 142.9 11.7 167 324-494 260-478 (497)
422 KOG0060 Long-chain acyl-CoA tr 99.5 5.7E-13 1.2E-17 144.9 14.0 159 324-487 431-640 (659)
423 PF05192 MutS_III: MutS domain 99.5 4.4E-13 9.6E-18 131.8 11.7 169 1-266 33-204 (204)
424 cd03241 ABC_RecN RecN ATPase i 99.4 6.6E-13 1.4E-17 137.8 12.8 75 413-489 169-248 (276)
425 COG0178 UvrA Excinuclease ATPa 99.4 2.9E-12 6.3E-17 144.1 13.9 87 399-486 806-897 (935)
426 PRK00635 excinuclease ABC subu 99.4 3.8E-12 8.3E-17 156.6 15.1 89 399-488 1683-1776(1809)
427 KOG0064 Peroxisomal long-chain 99.4 1.1E-11 2.3E-16 133.5 15.3 155 327-486 482-681 (728)
428 COG4170 SapD ABC-type antimicr 99.3 4E-12 8.6E-17 122.7 8.9 146 342-489 25-235 (330)
429 PF02463 SMC_N: RecF/RecN/SMC 99.2 8.1E-11 1.8E-15 117.7 12.6 71 414-486 136-211 (220)
430 cd03242 ABC_RecF RecF is a rec 99.2 4.6E-11 1E-15 123.7 9.3 75 412-491 181-269 (270)
431 COG3910 Predicted ATPase [Gene 99.1 2.4E-10 5.2E-15 109.0 10.4 68 411-479 126-193 (233)
432 TIGR00630 uvra excinuclease AB 99.1 1.5E-10 3.3E-15 136.8 10.5 95 399-494 471-575 (924)
433 PRK00349 uvrA excinuclease ABC 99.1 2.1E-10 4.5E-15 135.9 9.9 95 399-494 473-577 (943)
434 COG3845 ABC-type uncharacteriz 99.1 5.8E-10 1.3E-14 120.3 12.3 169 323-493 254-483 (501)
435 KOG0063 RNAse L inhibitor, ABC 99.1 2.5E-10 5.5E-15 120.4 9.1 146 342-487 354-531 (592)
436 PRK13695 putative NTPase; Prov 99.0 6.4E-10 1.4E-14 107.4 7.3 134 353-491 2-153 (174)
437 TIGR02858 spore_III_AA stage I 99.0 1.9E-09 4.1E-14 111.2 10.9 112 352-479 112-234 (270)
438 PRK08533 flagellar accessory p 98.9 1.2E-08 2.5E-13 103.3 12.2 134 328-474 9-162 (230)
439 cd01124 KaiC KaiC is a circadi 98.9 5.8E-09 1.3E-13 101.2 8.9 120 353-475 1-141 (187)
440 PF13304 AAA_21: AAA domain; P 98.8 9E-09 1.9E-13 102.4 7.8 65 411-476 233-301 (303)
441 TIGR00634 recN DNA repair prot 98.7 5.5E-08 1.2E-12 110.9 11.3 115 413-535 439-561 (563)
442 KOG0065 Pleiotropic drug resis 98.7 4.4E-08 9.6E-13 116.3 10.1 152 342-495 133-344 (1391)
443 cd01120 RecA-like_NTPases RecA 98.7 8.7E-08 1.9E-12 89.7 10.2 121 353-475 1-138 (165)
444 KOG0063 RNAse L inhibitor, ABC 98.7 5.3E-08 1.1E-12 103.2 9.4 80 399-479 198-278 (592)
445 PRK10869 recombination and rep 98.7 1.3E-07 2.8E-12 107.3 12.3 114 414-535 430-551 (553)
446 TIGR00618 sbcc exonuclease Sbc 98.6 6.6E-08 1.4E-12 117.8 8.9 83 405-488 941-1035(1042)
447 PRK06067 flagellar accessory p 98.6 4.8E-07 1E-11 91.5 13.2 125 347-475 22-166 (234)
448 PHA02562 46 endonuclease subun 98.5 1.5E-07 3.2E-12 107.3 7.4 87 396-488 453-551 (562)
449 PRK07721 fliI flagellum-specif 98.5 4.7E-07 1E-11 99.5 10.8 141 342-495 151-336 (438)
450 smart00382 AAA ATPases associa 98.5 2.1E-06 4.5E-11 77.2 13.0 116 352-473 3-125 (148)
451 PRK03918 chromosome segregatio 98.5 3E-07 6.5E-12 110.4 9.1 78 409-487 783-867 (880)
452 PRK06793 fliI flagellum-specif 98.5 2.4E-07 5.1E-12 101.2 7.3 143 340-492 146-301 (432)
453 PRK01156 chromosome segregatio 98.4 6E-07 1.3E-11 108.0 9.6 78 410-487 797-883 (895)
454 TIGR02788 VirB11 P-type DNA tr 98.4 1.8E-07 3.9E-12 98.8 4.1 124 343-490 137-269 (308)
455 cd01131 PilT Pilus retraction 98.4 4.3E-07 9.4E-12 89.7 6.1 116 353-484 3-119 (198)
456 PTZ00132 GTP-binding nuclear p 98.4 3.1E-07 6.7E-12 91.5 4.5 49 412-461 148-204 (215)
457 PRK10246 exonuclease subunit S 98.4 8.7E-07 1.9E-11 107.8 9.0 69 409-478 944-1021(1047)
458 TIGR02168 SMC_prok_B chromosom 98.3 1E-06 2.2E-11 108.5 7.6 78 407-486 1082-1164(1179)
459 TIGR00606 rad50 rad50. This fa 98.2 3.1E-06 6.7E-11 105.5 10.3 75 406-480 1191-1277(1311)
460 COG0419 SbcC ATPase involved i 98.2 3.8E-06 8.3E-11 101.1 8.6 79 409-488 810-897 (908)
461 cd01128 rho_factor Transcripti 98.1 1.3E-05 2.8E-10 82.0 9.9 73 414-491 129-211 (249)
462 TIGR02169 SMC_prok_A chromosom 98.0 6.4E-06 1.4E-10 101.6 7.5 78 408-487 1068-1150(1164)
463 cd00009 AAA The AAA+ (ATPases 98.0 3.6E-05 7.9E-10 69.9 10.3 108 349-475 18-131 (151)
464 cd01125 repA Hexameric Replica 98.0 1.2E-05 2.6E-10 81.7 7.5 46 429-475 109-160 (239)
465 COG4637 Predicted ATPase [Gene 98.0 6.4E-05 1.4E-09 77.6 12.5 67 413-481 269-338 (373)
466 COG0178 UvrA Excinuclease ATPa 98.0 2E-05 4.2E-10 90.1 9.5 89 399-488 465-557 (935)
467 PRK13830 conjugal transfer pro 98.0 2.1E-05 4.5E-10 93.5 9.4 46 429-475 650-696 (818)
468 PRK09183 transposase/IS protei 98.0 2.1E-05 4.5E-10 81.1 8.0 109 342-474 95-206 (259)
469 TIGR03881 KaiC_arch_4 KaiC dom 97.9 0.00013 2.8E-09 73.5 13.5 125 347-474 17-166 (229)
470 PRK02224 chromosome segregatio 97.9 1.6E-05 3.4E-10 95.7 7.9 77 410-487 777-867 (880)
471 PRK06995 flhF flagellar biosyn 97.9 4.7E-05 1E-09 84.5 10.9 92 342-443 248-346 (484)
472 cd02023 UMPK Uridine monophosp 97.9 7.9E-06 1.7E-10 80.4 4.0 90 353-446 1-113 (198)
473 TIGR01420 pilT_fam pilus retra 97.9 1.7E-05 3.6E-10 85.1 6.4 113 349-478 121-234 (343)
474 TIGR02903 spore_lon_C ATP-depe 97.9 0.0002 4.3E-09 82.6 15.5 23 352-374 176-199 (615)
475 cd01130 VirB11-like_ATPase Typ 97.9 1E-05 2.2E-10 79.1 4.3 29 342-371 17-45 (186)
476 PRK14721 flhF flagellar biosyn 97.9 0.00015 3.3E-09 79.3 13.7 91 348-449 189-285 (420)
477 PRK04296 thymidine kinase; Pro 97.9 6.6E-05 1.4E-09 73.7 9.8 142 352-505 3-157 (190)
478 TIGR00767 rho transcription te 97.9 0.00033 7.1E-09 75.8 15.2 45 326-371 130-188 (415)
479 cd00820 PEPCK_HprK Phosphoenol 97.8 1.5E-05 3.2E-10 70.7 3.5 29 342-371 7-35 (107)
480 PF05190 MutS_IV: MutS family 97.8 0.00029 6.4E-09 60.2 11.4 89 130-223 1-90 (92)
481 PRK00064 recF recombination pr 97.8 4.3E-05 9.4E-10 82.5 7.5 78 410-491 269-359 (361)
482 TIGR00416 sms DNA repair prote 97.8 0.00023 4.9E-09 79.1 13.2 135 347-487 91-244 (454)
483 PF13555 AAA_29: P-loop contai 97.8 1.8E-05 4E-10 62.9 3.3 29 343-371 15-43 (62)
484 TIGR01026 fliI_yscN ATPase Fli 97.8 0.00041 8.8E-09 76.6 14.3 146 340-495 153-341 (440)
485 cd01123 Rad51_DMC1_radA Rad51_ 97.7 0.00014 3.1E-09 73.3 9.7 127 347-474 16-170 (235)
486 PRK06731 flhF flagellar biosyn 97.7 0.0012 2.6E-08 68.4 16.5 138 349-494 74-219 (270)
487 TIGR02655 circ_KaiC circadian 97.7 2E-05 4.3E-10 88.5 3.5 124 347-475 18-168 (484)
488 PRK14722 flhF flagellar biosyn 97.7 0.00027 5.8E-09 76.3 11.8 103 342-453 129-238 (374)
489 cd01121 Sms Sms (bacterial rad 97.7 0.00042 9.2E-09 75.0 13.4 120 347-473 79-209 (372)
490 PRK14723 flhF flagellar biosyn 97.7 0.00059 1.3E-08 79.4 14.4 104 342-454 177-287 (767)
491 TIGR00152 dephospho-CoA kinase 97.6 8.5E-05 1.8E-09 72.6 6.0 119 353-485 1-129 (188)
492 TIGR03015 pepcterm_ATPase puta 97.6 0.00023 5E-09 73.1 9.5 30 342-371 34-63 (269)
493 cd01393 recA_like RecA is a b 97.6 0.00076 1.7E-08 67.5 12.7 127 347-474 16-169 (226)
494 PRK11889 flhF flagellar biosyn 97.6 0.00087 1.9E-08 72.4 13.3 85 352-444 242-333 (436)
495 PRK06526 transposase; Provisio 97.6 0.00026 5.6E-09 72.7 8.9 104 349-474 97-201 (254)
496 PRK06893 DNA replication initi 97.6 0.00037 8.1E-09 70.4 9.9 94 352-475 40-135 (229)
497 TIGR03185 DNA_S_dndD DNA sulfu 97.6 0.0013 2.9E-08 76.5 15.6 43 327-371 6-48 (650)
498 TIGR02237 recomb_radB DNA repa 97.5 0.00064 1.4E-08 67.3 11.1 123 347-473 9-149 (209)
499 PTZ00454 26S protease regulato 97.5 0.0003 6.5E-09 76.9 9.3 102 348-475 177-295 (398)
500 PRK12727 flagellar biosynthesi 97.5 0.0012 2.7E-08 73.7 13.8 100 347-453 347-451 (559)
No 1
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=100.00 E-value=1.7e-84 Score=750.58 Aligned_cols=562 Identities=38% Similarity=0.535 Sum_probs=496.6
Q ss_pred CchHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHh-cCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Q 006974 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQ-SQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVW 79 (623)
Q Consensus 1 ~G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~~~~-~~~~~l~~i~Di~~~l~r~~~g~~l~~~eL~~i~~~L~~~~~l~ 79 (623)
||++++++ +.|..+.++++++|++|.++..++. .+.+||++++|+++++.++..|+.+++.||+.|+.+|..+..++
T Consensus 26 ~Gk~~l~~--l~P~~~~~~i~~~l~~~~e~~~~~~~~~~~~l~~~~Di~~~l~r~~~g~~l~~~eL~~i~~~l~~~~~l~ 103 (782)
T PRK00409 26 LGKEKVLQ--LDPETDFEEVEELLEETDEAAKLLRLKGLPPFEGVKDIDDALKRAEKGGVLSGDELLEIAKTLRYFRQLK 103 (782)
T ss_pred HHHHHHHc--CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 69999999 8999999999999999999998885 78999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCCcccccchHHHHHhcCCChhHHHHHHhhhhccCCCcccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006974 80 KKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQ 159 (623)
Q Consensus 80 ~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~~I~~~Id~~~~~I~d~as~~L~~iR~~~~~~~~~l~~~l~~~~~~ 159 (623)
+++..... ...++.|..++..+.+++++.+.|.+|||++| .|+|+|||+|+.||+++++....+++.+.+....
T Consensus 104 ~~l~~~~~-----~~~~~~L~~~~~~l~~~~~l~~~i~~~id~~g-~i~d~aS~eL~~iR~~~~~~~~~i~~~l~~~~~~ 177 (782)
T PRK00409 104 RFIEDLEE-----EEELPILEEWVAKIRTLPELEQEIHNCIDEEG-EVKDSASEKLRGIRRQLRRKKSRIREKLESIIRS 177 (782)
T ss_pred HHHHhccc-----ccchhHHHHHHHcCcCcHHHHHHHHHHhCCCC-EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99975200 01367888999999999999999999999884 8999999999999999998888888888776554
Q ss_pred HHHhcCCCCcccccccCceEEEEccccccCCCCcEEEEEecCCcEEEeccchhhhhhHHHHHHhHHHHHHHHHHHHHHHH
Q 006974 160 IFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTA 239 (623)
Q Consensus 160 ~~~~~~~~~~~i~~~~~r~~i~v~~~~~~~~~~g~~~~~s~sg~~~~~ep~~~~~l~~~~~~l~~~~~~ee~~il~~L~~ 239 (623)
.....++++.++++|++||||||+.++++.+| |++|+.|+||+|+|++|..++++||++.++..++.+++.+|+++|+.
T Consensus 178 ~~~~~~L~d~~it~r~~r~~i~vk~~~~~~~~-g~v~~~s~sg~t~y~ep~~~~~ln~~l~~l~~~~~~~~~~il~~l~~ 256 (782)
T PRK00409 178 KSLQKYLQDTIITIRNDRYVLPVKAEYKHAIK-GIVHDQSSSGATLYIEPQSVVELNNEIRELRNKEEQEIERILKELSA 256 (782)
T ss_pred cccccccccceEEEECCEEEEEechhhhccCC-CceeeEECCCCEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32235678899999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCcccceecCCCCCCCcceEEEcccccCccccchhhhcccccCCCCCCC
Q 006974 240 EIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLK 319 (623)
Q Consensus 240 ~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~ 319 (623)
.|..+.+.|..+++.+++||+++|+|.||.+++||+|.|++++ .+.++++|||+|...
T Consensus 257 ~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~~~------~i~l~~~rHPll~~~---------------- 314 (782)
T PRK00409 257 KVAKNLDFLKFLNKIFDELDFIFARARYAKALKATFPLFNDEG------KIDLRQARHPLLDGE---------------- 314 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccceEcCCC------cEEEcCcCCceeccC----------------
Confidence 9999999999999999999999999999999999999998643 699999999998421
Q ss_pred CCCCCCcEEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHH
Q 006974 320 SDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399 (623)
Q Consensus 320 ~~~g~~~l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~ 399 (623)
.+||+|+.+..+.++++|||||||||||+||++|++++|+|+|+|||+...+.+++|++++
T Consensus 315 -------------------~~Vpndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~ 375 (782)
T PRK00409 315 -------------------KVVPKDISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIF 375 (782)
T ss_pred -------------------ceECceeEECCCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEE
Confidence 2689999998766899999999999999999999999999999999998657899999999
Q ss_pred HHcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhh
Q 006974 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL 479 (623)
Q Consensus 400 ~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~ 479 (623)
+++|+.|++.+.+|+||+||+++..++..+++|+|+||||||+||||.++.+++.++++++.+.++++|+|||+.++..+
T Consensus 376 ~~ig~~~si~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~ 455 (782)
T PRK00409 376 ADIGDEQSIEQSLSTFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKAL 455 (782)
T ss_pred EecCCccchhhchhHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHH
Confidence 99999999999999999999988888887799999999999999999999999999999999889999999999999888
Q ss_pred ccccceeeCceEEEecCccccccccccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHhhcchHhhhHHHHHHHHHHHHHH
Q 006974 480 KDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERR 559 (623)
Q Consensus 480 ~~~~~~i~~g~~~~~~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 559 (623)
+.....+.+++|.|+.+++.|+|++..|+++.|||+++|+++|+|++|+++|++++.. +..+.++++.+|+++++
T Consensus 456 ~~~~~~v~~~~~~~d~~~l~~~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~-----~~~~~~~li~~l~~~~~ 530 (782)
T PRK00409 456 MYNREGVENASVEFDEETLRPTYRLLIGIPGKSNAFEIAKRLGLPENIIEEAKKLIGE-----DKEKLNELIASLEELER 530 (782)
T ss_pred HhcCCCeEEEEEEEecCcCcEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHH
Confidence 8778888999999999999999999999999999999999999999999999998863 34467788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhchhh-------HHHHHHHHHhHHHHHhHhhhHHhhccc
Q 006974 560 KLESQARTAASLHAEIMDLYREDSTSASISV-------YRYQFAVTSTLSKVDFDAIPNIDQCKD 617 (623)
Q Consensus 560 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (623)
++++..+++++.++++++++++++....... -+...+..+-+.+++.+++.++.+.|+
T Consensus 531 ~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 531 ELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877777777766666666666654432211 122333555666666666666666654
No 2
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=100.00 E-value=4.7e-82 Score=728.50 Aligned_cols=557 Identities=34% Similarity=0.468 Sum_probs=492.8
Q ss_pred CchHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHhcCCCCCHHH-HHHHHHHHHHHHHHH
Q 006974 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSE-ICAVRRTLRAVNNVW 79 (623)
Q Consensus 1 ~G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~~~~~~~~~l~~i~Di~~~l~r~~~g~~l~~~e-L~~i~~~L~~~~~l~ 79 (623)
+|++.+++ +.|.++.++++++|++|.++.++.. ++||.+++||++++.++..|.++++.| |+.|+.+|..+.+++
T Consensus 26 ~gk~~~~~--l~P~~~~~~i~~~l~~~~e~~~~~~--~~~l~~~~di~~~l~r~~~g~~l~~~e~l~~i~~~l~~~~~l~ 101 (771)
T TIGR01069 26 LGKEDAIG--LKPPKSVEESKEIIIKLTALGSIEN--NVRFFGFEDIRELLKRAELGGIVKGLEYILVIQNALKTVKHLK 101 (771)
T ss_pred HHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHhhc--cCCcCCCccHHHHHHHHhcCCcCChHHHHHHHHHHHHHHHHHH
Confidence 58999999 9999999999999999999988775 899999999999999999999999988 999999999999999
Q ss_pred HHHHHhhhccCCcccccchHHHHHhcCCChhHHHHHHhhhhccCCCcccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006974 80 KKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQ 159 (623)
Q Consensus 80 ~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~~I~~~Id~~~~~I~d~as~~L~~iR~~~~~~~~~l~~~l~~~~~~ 159 (623)
.++... ..+|.|..++..+.++++|.+.|.+|||++| .|+|+|||+|+.||+++++++..+++.+.+....
T Consensus 102 ~~l~~~--------~~~~~L~~~~~~l~~~~~l~~~i~~~id~~g-~i~d~aS~~L~~ir~~~~~~~~~i~~~l~~~~~~ 172 (771)
T TIGR01069 102 VLSEHV--------LDLEILFHLRLNLITLPPLENDIIACIDDDG-KVKDGASEELDAIRESLKALEEEVVKRLHKIIRS 172 (771)
T ss_pred HHHhcc--------ccchHHHHHHhcCCCcHHHHHHHHHHhCCCC-EECCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 998642 1378899999999999999999999999885 8999999999999999999888888888776543
Q ss_pred HHHhcCCCCcccccccCceEEEEccccccCCCCcEEEEEecCCcEEEeccchhhhhhHHHHHHhHHHHHHHHHHHHHHHH
Q 006974 160 IFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTA 239 (623)
Q Consensus 160 ~~~~~~~~~~~i~~~~~r~~i~v~~~~~~~~~~g~~~~~s~sg~~~~~ep~~~~~l~~~~~~l~~~~~~ee~~il~~L~~ 239 (623)
.....++++.++|+|++||||||++++++.+| |++|+.|+||+|+|+||.+++++||++.++..++.+++.+|+++|+.
T Consensus 173 ~~~~~~l~~~~it~r~~r~vipvk~~~~~~i~-g~v~~~S~sg~t~~~ep~~~~~ln~~l~~l~~~~~~e~~~il~~L~~ 251 (771)
T TIGR01069 173 KELAKYLSDTIVTIRNGRYVLPLKSGFKGKIK-GIVHDTSSSGETFYIEPQAIVKLNNKLAQLKNEEECEIEKILRTLSE 251 (771)
T ss_pred hchhhhhcCceEEEECCEEEEEeeHHHhhcCC-CeEEEEeCCCCEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22235677899999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCcccceecCCCCCCCcceEEEcccccCccccchhhhcccccCCCCCCC
Q 006974 240 EIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLK 319 (623)
Q Consensus 240 ~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~ 319 (623)
.|.++.+.|..+++.+++||+++|+|.||..+++++|.+++.+ .+.++++|||++...
T Consensus 252 ~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~~~------~i~l~~~rhPll~~~---------------- 309 (771)
T TIGR01069 252 KVQEYLLELKFLFKEFDFLDSLQARARYAKAVKGEFPMPSFTG------KIILENARHPLLKEP---------------- 309 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCeeceecCCC------CEEEccccCceecCC----------------
Confidence 9999999999999999999999999999999999999987643 699999999998321
Q ss_pred CCCCCCcEEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHH
Q 006974 320 SDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399 (623)
Q Consensus 320 ~~~g~~~l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~ 399 (623)
.+||+|+.+..+.++++||||||||||||||++|++.+|+++|+++|+.....+++|++++
T Consensus 310 -------------------~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~ 370 (771)
T TIGR01069 310 -------------------KVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIF 370 (771)
T ss_pred -------------------ceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhhee
Confidence 2679999998776899999999999999999999999999999999998767899999999
Q ss_pred HHcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhh
Q 006974 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL 479 (623)
Q Consensus 400 ~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~ 479 (623)
.++|+.+++...+|+||+||++++.++..+++|+||||||||+||||.++.+++.++++++.+.++++|+|||+.++..+
T Consensus 371 ~~i~~~~si~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~ 450 (771)
T TIGR01069 371 ADIGDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKAL 450 (771)
T ss_pred eecChHhHHhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 99999999999999999999998888888899999999999999999999999999999999889999999999999988
Q ss_pred ccccceeeCceEEEecCccccccccccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHhhcchHhhhHHHHHHHHHHHHHH
Q 006974 480 KDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERR 559 (623)
Q Consensus 480 ~~~~~~i~~g~~~~~~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 559 (623)
+.....+.|++|.|+.+++.|+|++.+|+++.|||+.+|+++|+|++|+++|++++.. ...+.++++.+|+.++.
T Consensus 451 ~~~~~~v~~~~~~~d~~~l~p~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~-----~~~~~~~li~~L~~~~~ 525 (771)
T TIGR01069 451 MYNNEGVENASVLFDEETLSPTYKLLKGIPGESYAFEIAQRYGIPHFIIEQAKTFYGE-----FKEEINVLIEKLSALEK 525 (771)
T ss_pred hcCCCCeEEeEEEEcCCCCceEEEECCCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999999999999999999999999999999864 33457777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhchhh-------HHHHHHHHHhHHHHHhHhhhHHhhccc
Q 006974 560 KLESQARTAASLHAEIMDLYREDSTSASISV-------YRYQFAVTSTLSKVDFDAIPNIDQCKD 617 (623)
Q Consensus 560 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (623)
++++..+++++.++++++.+++++....... .+...+..+.+.+++.+++.++.+.|+
T Consensus 526 ~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 526 ELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777666666666666555544432211 122334556666667777776666664
No 3
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=100.00 E-value=2e-73 Score=661.96 Aligned_cols=486 Identities=22% Similarity=0.321 Sum_probs=436.0
Q ss_pred CchHhHhccCCCCCCCHHHHHHHHHHHHHHHH--HH-hcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 006974 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA--MM-QSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77 (623)
Q Consensus 1 ~G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~--~~-~~~~~~l~~i~Di~~~l~r~~~g~~l~~~eL~~i~~~L~~~~~ 77 (623)
||+|+||+|.++|+.+.++|++||+.++++.+ .+ .....+|++++|+++++.|+..|.. ++.||..++.+|..+.+
T Consensus 284 ~G~RlLr~wl~~Pl~d~~~I~~Rld~Ve~l~~~~~l~~~l~~~L~~i~Dlerll~ri~~~~~-~~~dl~~l~~~l~~~~~ 362 (840)
T TIGR01070 284 MGSRLLKRWLHRPLRDREVLEARQDTVEVLLRHFFLREGLRPLLKEVGDLERLAARVALGNA-RPRDLARLRTSLEQLPE 362 (840)
T ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHhccCcCHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999987 33 3667799999999999999998874 99999999999999999
Q ss_pred HHHHHHHhhhccCCcccccchHHHHHhcCCChhHHHHHHhhhhcc-------CCCcccCCcCHHHHHHHHHHHHHHHHHH
Q 006974 78 VWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDC-------KLLIILDRASEDLELIRAERKRNMENLD 150 (623)
Q Consensus 78 l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~~I~~~Id~-------~~~~I~d~as~~L~~iR~~~~~~~~~l~ 150 (623)
++..+.... .+.+..+...++.+.++.+.|.++|++ +++.|+|++|++|+.+|+..++..+.+.
T Consensus 363 l~~~l~~~~---------~~~l~~l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~I~~g~~~~Ld~lr~~~~~~~~~l~ 433 (840)
T TIGR01070 363 LRALLEELE---------GPTLQALAAQIDDFSELLELLEAALIENPPLVVRDGGLIREGYDEELDELRAASREGTDYLA 433 (840)
T ss_pred HHHHHHhcC---------cHHHHHHHHhcccHHHHHHHHHHHHhcCCccccccCCeeCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999886421 356777788888899999999999974 3457999999999999998877666655
Q ss_pred HHHHHHHHHHHHhcCCCCcccccc-cCceEEEEccccccCCCCcEEEEEecCCcEEEeccchhhhhhHHHHHHhHHHHHH
Q 006974 151 SLLKKVAAQIFQAGGIDKPLITKR-RSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAE 229 (623)
Q Consensus 151 ~~l~~~~~~~~~~~~~~~~~i~~~-~~r~~i~v~~~~~~~~~~g~~~~~s~sg~~~~~ep~~~~~l~~~~~~l~~~~~~e 229 (623)
.+.++ +....+++...+.+. +.||+|+|+.++...+|+.|++.+|.+|.++|++|+ ++++++++.++..++.++
T Consensus 434 ~l~~~----~~~~~~i~~lk~~~~~~~gy~iev~~~~~~~vp~~~i~~~s~~~~~rf~tpe-l~~l~~~l~~~~~~~~~~ 508 (840)
T TIGR01070 434 RLEAR----ERERTGIPTLKVGYNAVFGYYIEVTRGQLHLVPAHYRRRQTLKNAERYITPE-LKEKEDKVLEAEGKILAL 508 (840)
T ss_pred HHHHH----HHHHcCCCceEEEEecCceEEEEEehhhhhcCCcceEEEEeccCceEEcCHH-HHHHHHHHHHHHHHHHHH
Confidence 54433 333346666555554 459999999999899997799999999999999997 899999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCcccceecCCCCCCCcceEEEcccccCccccchhhhcc
Q 006974 230 ETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLS 309 (623)
Q Consensus 230 e~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~ 309 (623)
|.+|+.+|+..|..+.+.|..+.+.++.|||++|+|.+|.+++||||.|+++. .+.|++||||+++... .
T Consensus 509 e~~i~~~L~~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~~------~i~i~~~RHP~le~~~-~--- 578 (840)
T TIGR01070 509 EKELFEELRELLKKYLEALQEAARALAELDVLANLAEVAETLHYTRPRFGDDP------QLRIREGRHPVVEQVL-R--- 578 (840)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCceecCCC------cEEEEeeECHHHHhcc-C---
Confidence 99999999999999999999999999999999999999999999999998753 6999999999994211 0
Q ss_pred cccCCCCCCCCCCCCCcEEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCC
Q 006974 310 AASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389 (623)
Q Consensus 310 ~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~ 389 (623)
+.+||||+.+..+.++++|||||||||||+||++|++++|||+|+|||+..
T Consensus 579 ----------------------------~~~VpNdi~l~~~~~~~iITGPNmgGKSt~lrqvali~imAq~G~~VPA~~- 629 (840)
T TIGR01070 579 ----------------------------TPFVPNDLEMAHNRRMLLITGPNMGGKSTYMRQTALIALLAQIGSFVPAES- 629 (840)
T ss_pred ----------------------------CCeEeeeeecCCCccEEEEECCCCCCchHHHHHHHHHHHHHhcCCCccchh-
Confidence 137899999987667999999999999999999999999999999999996
Q ss_pred CCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEE
Q 006974 390 PRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAV 468 (623)
Q Consensus 390 ~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vi 468 (623)
+.++++|+||+++|..|++..+.|||+.+|.+++.|+..+++++||||||+|+|||+.+|.+|++++++++.+ .++.+|
T Consensus 630 a~i~~~D~Iftrig~~d~i~~g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~ 709 (840)
T TIGR01070 630 AELPLFDRIFTRIGASDDLASGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTL 709 (840)
T ss_pred eEeccccEEEEecCcccchhcCcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998 788999
Q ss_pred EEcCchhHHhhccccceeeCceEEE--ecCccccccccccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHhhcc
Q 006974 469 VTTHYADLSCLKDKDTRFENAATEF--SLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRP 540 (623)
Q Consensus 469 i~TH~~~l~~~~~~~~~i~~g~~~~--~~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a~~~~~~~~~ 540 (623)
++|||+++..++.....+.|.+|.+ +.+.+.|+|++.+|.++.|||+++|+++|+|++|+++|++.+..++.
T Consensus 710 ~~TH~~eL~~l~~~~~~v~n~~~~~~~~~~~l~flYkl~~G~~~~Sygi~VA~laGlP~~VI~rA~~il~~le~ 783 (840)
T TIGR01070 710 FATHYFELTALEESLPGLKNVHVAALEHNGTIVFLHQVLPGPASKSYGLAVAALAGLPKEVIARARQILTQLEA 783 (840)
T ss_pred EEcCchHHHHHhhhCCCeEEEEEEEEEECCcEEEEEEECCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 9999999999998888899999987 56789999999999999999999999999999999999999887653
No 4
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=100.00 E-value=6.1e-71 Score=644.57 Aligned_cols=487 Identities=23% Similarity=0.348 Sum_probs=435.0
Q ss_pred CchHhHhccCCCCCCCHHHHHHHHHHHHHHHH---HHhcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 006974 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA---MMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77 (623)
Q Consensus 1 ~G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~---~~~~~~~~l~~i~Di~~~l~r~~~g~~l~~~eL~~i~~~L~~~~~ 77 (623)
||+|+||+|.+.|+.|.++|++|++.++++.+ +.......|++++|++|++.|+..|.. ++.||..++.++..+..
T Consensus 298 ~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~~~~~~~~l~~~L~~i~Dlerll~ri~~~~~-~~~dl~~l~~~l~~~~~ 376 (854)
T PRK05399 298 MGGRLLRRWLHRPLRDREAIEARLDAVEELLEDPLLREDLRELLKGVYDLERLLSRIALGRA-NPRDLAALRDSLEALPE 376 (854)
T ss_pred HHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999986 223566799999999999999998875 89999999999999999
Q ss_pred HHHHHHHhhhccCCcccccchHHHHHhcCCChhHHHHHHhhhhccC-------CCcccCCcCHHHHHHHHHHHHHHHHHH
Q 006974 78 VWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCK-------LLIILDRASEDLELIRAERKRNMENLD 150 (623)
Q Consensus 78 l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~~I~~~Id~~-------~~~I~d~as~~L~~iR~~~~~~~~~l~ 150 (623)
++..+.... .+.|..+...++.+.++.+.|.++|+++ ++.|+|++|++|+.+|+.+++..+.++
T Consensus 377 l~~~l~~~~---------~~~l~~l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~i~~g~~~~Ld~lr~~~~~~~~~l~ 447 (854)
T PRK05399 377 LKELLAELD---------SPLLAELAEQLDPLEELADLLERAIVEEPPLLIRDGGVIADGYDAELDELRALSDNGKDWLA 447 (854)
T ss_pred HHHHHHhcC---------cHHHHHHHhhcccHHHHHHHHHHHHccCCchhcccCCEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 998886421 3556677777888999999999999863 457999999999999999887777777
Q ss_pred HHHHHHHHHHHHhcCCCCccccccc-CceEEEEccccccCCCCcEEEEEecCCcEEEeccchhhhhhHHHHHHhHHHHHH
Q 006974 151 SLLKKVAAQIFQAGGIDKPLITKRR-SRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAE 229 (623)
Q Consensus 151 ~~l~~~~~~~~~~~~~~~~~i~~~~-~r~~i~v~~~~~~~~~~g~~~~~s~sg~~~~~ep~~~~~l~~~~~~l~~~~~~e 229 (623)
++.++.. ...+++...+.+.+ .+|+|+|+.+....+|++|++.++.+|.++|++|+ +.++++++.++..++.++
T Consensus 448 ~~~~~~~----~~~~~~~l~~~~~~~~gy~iev~~~~~~~vp~~~~~~~s~~~~~rf~t~~-l~~l~~~l~~~~~~~~~~ 522 (854)
T PRK05399 448 ELEARER----ERTGISSLKVGYNKVFGYYIEVTKANLDKVPEDYIRRQTLKNAERYITPE-LKELEDKILSAEEKALAL 522 (854)
T ss_pred HHHHHHH----HHcCCCceEEEEcCceeEEEEEEcchhhhCChhhhheeeccCeEEEECHH-HHHHHHHHHHHHHHHHHH
Confidence 6665532 33455544444433 37999999998888997799999999999999997 899999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCcccceecCCCCCCCcceEEEcccccCccccchhhhcc
Q 006974 230 ETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLS 309 (623)
Q Consensus 230 e~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~ 309 (623)
|.+|+++|.+.+..+.+.|..+.+.+++|||++|+|.+|.+++||||.|++++ .+.|++||||+++.. +..
T Consensus 523 e~~i~~~l~~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~~------~l~i~~~rHP~le~~-~~~-- 593 (854)
T PRK05399 523 EYELFEELREEVAEHIERLQKLAKALAELDVLASLAEVAEENNYVRPEFTDDP------GIDIEEGRHPVVEQV-LGG-- 593 (854)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCccccEEeCCC------CEEEEeccCcEEecc-cCC--
Confidence 99999999999999999999999999999999999999999999999998753 699999999999432 100
Q ss_pred cccCCCCCCCCCCCCCcEEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCC
Q 006974 310 AASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389 (623)
Q Consensus 310 ~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~ 389 (623)
+.+||+|+.+..+.++++|||||||||||+||++|++++|||+|+|||+..
T Consensus 594 ----------------------------~~~vpnd~~l~~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~~VPa~~- 644 (854)
T PRK05399 594 ----------------------------EPFVPNDCDLDEERRLLLITGPNMAGKSTYMRQVALIVLLAQIGSFVPAES- 644 (854)
T ss_pred ----------------------------CceEecceeeCCCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCCceeccc-
Confidence 137899999986658999999999999999999999999999999999996
Q ss_pred CCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEE
Q 006974 390 PRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAV 468 (623)
Q Consensus 390 ~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~-~~~vi 468 (623)
+.++++|+||+++|..|++..+.|||+.+|.+++.++..+++++||||||||+||++.+|.++++++++++.+. ++++|
T Consensus 645 a~i~~~d~I~triga~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l 724 (854)
T PRK05399 645 ARIGIVDRIFTRIGASDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTL 724 (854)
T ss_pred eEecccCeeeeccCcccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999987 58999
Q ss_pred EEcCchhHHhhccccceeeCceEEEec--CccccccccccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHhhcc
Q 006974 469 VTTHYADLSCLKDKDTRFENAATEFSL--ETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRP 540 (623)
Q Consensus 469 i~TH~~~l~~~~~~~~~i~~g~~~~~~--~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a~~~~~~~~~ 540 (623)
++||++++..++++...+.|.+|.++. +.+.|+|++.+|.++.|||+++|+++|+|++|+++|++.+..++.
T Consensus 725 ~aTH~~el~~l~~~~~~v~n~~m~~~~~~~~l~flYkl~~G~~~~SyGi~VA~laGlP~~VI~rA~~i~~~le~ 798 (854)
T PRK05399 725 FATHYHELTELEEKLPGVKNVHVAVKEHGGDIVFLHKVVPGAADKSYGIHVAKLAGLPASVIKRAREILAQLES 798 (854)
T ss_pred EEechHHHHHHhhhcCCeEEEEEEEEEeCCeEEEEEEeCcCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 999999999999988899999998875 689999999999999999999999999999999999999887653
No 5
>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.1e-67 Score=596.83 Aligned_cols=516 Identities=36% Similarity=0.496 Sum_probs=460.8
Q ss_pred chHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHh-cCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 006974 2 GHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQ-SQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVWK 80 (623)
Q Consensus 2 G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~~~~-~~~~~l~~i~Di~~~l~r~~~g~~l~~~eL~~i~~~L~~~~~l~~ 80 (623)
|++.+++ +-|.++.+.++..+++|.++..++. .+.+|+.++.|+...+.++..|+.|.+++|+.|..+|..+..+++
T Consensus 25 g~~~~~~--l~p~~~~~~i~~~~~e~~~~~~~~~~~g~~~~~~l~~i~~~l~~~e~g~~l~~~el~~i~~~l~~~~~lkr 102 (753)
T COG1193 25 GLEELKN--LKPRTDLELIEEELSETAEALDILEDEGLPPLGGLNDVSEALGRLEKGGRLHVEELLEISDFLRGFRALKR 102 (753)
T ss_pred HHHHHHh--cCccccHHHHHHHHHHHHHHHHHHhccCCCCchhhhhhHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 7888999 9999999999999999999999887 688999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccCCcccccchHHHHHhcCCChhHHHHHHhhhhccCCCcccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006974 81 KLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQI 160 (623)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~~I~~~Id~~~~~I~d~as~~L~~iR~~~~~~~~~l~~~l~~~~~~~ 160 (623)
+++.... .. ..++..+..++++...|..+||+++ .|.|.||++|..||...+...+++.+.+.......
T Consensus 103 ~~~~~e~--------~~--~~~~~~~~~~~~l~~~i~~~id~~g-~i~d~as~~l~~ir~~lr~~~~~i~~~l~~~~~~~ 171 (753)
T COG1193 103 AIKKLER--------IK--RTLALALIELSDLELEINIPIDDDG-LIKDRASFELDAIRRQLRDLEEEIRDKLESLIRSK 171 (753)
T ss_pred HHHHhhh--------HH--HHHHHhhhcchHHHHHHhhhhcccc-cccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Confidence 9986422 11 4567778889999999999999985 79999999999999998877777777776654432
Q ss_pred HHhcCCCCcccccccCceEEEEccccccCCCCcEEEEEecCCcEEEeccchhhhhhHHHHHHhHHHHHHHHHHHHHHHHH
Q 006974 161 FQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAE 240 (623)
Q Consensus 161 ~~~~~~~~~~i~~~~~r~~i~v~~~~~~~~~~g~~~~~s~sg~~~~~ep~~~~~l~~~~~~l~~~~~~ee~~il~~L~~~ 240 (623)
. +..+++.+++.|++|||+||++++++.++ |++|+.|++|+|+|++|..++.+||++.++..+|+.++.+|++.|+..
T Consensus 172 ~-~~~L~e~~v~~r~~r~vlpvk~~fk~~i~-giv~d~sssg~tl~ieP~~vv~l~n~~~~l~~eE~~e~e~il~~lsa~ 249 (753)
T COG1193 172 E-AKYLQDRIVTTRDGREVLPVKAEFKGAIK-GIVHDTSSSGATLYIEPRSVVKLNNELRALLVEEDEEEERILRELSAL 249 (753)
T ss_pred h-hHhhhhceEeccCCeEEeHHHHHhhhhcC-ceEeecccccCeeeecchHHHhhccHhhhhhccchHhHHHHHHHHHHH
Confidence 2 45677999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCcccceecCCCCCCCcceEEEcccccCccccchhhhcccccCCCCCCCC
Q 006974 241 IAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKS 320 (623)
Q Consensus 241 i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~~ 320 (623)
+.++.+.+..+...++++|++.|+++|+.++.++.|.|++++ .|.+.++|||++..
T Consensus 250 v~~~~~~l~~~~~~~~~lD~i~Ak~~~~~~~~~v~P~~~~~~------~l~l~~~~HPll~~------------------ 305 (753)
T COG1193 250 VAPVIPELEILLEIIGELDFIEAKVRYAKALKGVKPDFSNDG------VLELLDARHPLLKE------------------ 305 (753)
T ss_pred HhhhhHHHHHHHHHhhhhHHHHHHHHHHHhhccCCCccCCCc------eEEeccccCccCcc------------------
Confidence 999999999999999999999999999999999999998643 79999999999942
Q ss_pred CCCCCcEEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHH
Q 006974 321 DVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400 (623)
Q Consensus 321 ~~g~~~l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~ 400 (623)
.|++++.+......++|||||++||||.||++|+..+|+|+|.++|+.....+++|++++.
T Consensus 306 -------------------~v~~~i~~~~e~~~l~ITGpN~GGKtvtLKTlgl~~lm~q~gl~i~a~~gsei~~F~~i~a 366 (753)
T COG1193 306 -------------------DVPNDLELGEELDRLIITGPNTGGKTVTLKTLGLLRLMAQSGLPIPALEGSELPVFVKIFA 366 (753)
T ss_pred -------------------ccccccccccccceeeEecCCCCcceehHHHHHHHHHHHHcCCCeeccCCCcchhHHHhhh
Confidence 3567777777768999999999999999999999999999999999998789999999999
Q ss_pred HcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhc
Q 006974 401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLK 480 (623)
Q Consensus 401 ~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~ 480 (623)
++|+.|++.+.+||||++|..++.++.-++ +|+++||.++||||.+|++++.++++++.++++.++++||+.+++.++
T Consensus 367 DIGDeQsIeqsLSTFSshm~~i~~il~~~d--sLvl~DElg~GTdp~EgaaLai~ile~l~~~~~~~~~tTH~~elk~~~ 444 (753)
T COG1193 367 DIGDEQSIEQSLSTFSSHMTNIVEILEKAD--SLVLFDELGSGTDPDEGAALAIAILEDLLEKPAKIVATTHYRELKALA 444 (753)
T ss_pred ccCcHHHHHHHHhhhHHHHHHHHHHHhhcc--hhHHHHHhhcCCCcchhHHHHHHHHHHHHhcccceehHhhHHHHHHHH
Confidence 999999999999999999999999985444 999999999999999999999999999999999999999999999999
Q ss_pred cccceeeCceEEEecCccccccccccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHhhcchHhhhHHHHHHHHHHHHHHH
Q 006974 481 DKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRK 560 (623)
Q Consensus 481 ~~~~~i~~g~~~~~~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 560 (623)
.....+.|++|.|+.+++.|+|++.+|+++.|+|+.+|.++|+|..+++.|+..... +....+.++..+.....+
T Consensus 445 ~~~~~v~nas~~fd~etL~ptY~l~~G~~g~S~Af~ia~rlGl~~~iie~a~~~~g~-----~~~~~~~~i~~l~~~~~~ 519 (753)
T COG1193 445 AEREGVENASMEFDAETLRPTYRLLEGVPGRSNAFDIALRLGLPEPIIEEAKTEFGE-----EKELLEELIEKLEEVRKE 519 (753)
T ss_pred hcchhhhchhhhhhHHHhhHHHHHhcCCcccchHHHHHHHcCCCHHHHHHHHHhcCc-----hHhHHHHHhhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988752 233455556666666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006974 561 LESQARTAASLHAEIMDLYRED 582 (623)
Q Consensus 561 ~e~~~~~~~~~~~~~~~~~~~~ 582 (623)
+++..+.++..+.+.+.+...+
T Consensus 520 ~~~~~~~~e~~~~e~~~l~~~~ 541 (753)
T COG1193 520 LEEELEEVEKLLDEVELLTGAN 541 (753)
T ss_pred HHhHHHHHHHHHHHHHHHHHhh
Confidence 5555555555555444444444
No 6
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.1e-67 Score=603.35 Aligned_cols=492 Identities=24% Similarity=0.349 Sum_probs=431.6
Q ss_pred CchHhHhccCCCCCCCHHHHHHHHHHHHHHHHHH---hcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 006974 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMM---QSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77 (623)
Q Consensus 1 ~G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~~~---~~~~~~l~~i~Di~~~l~r~~~g~~l~~~eL~~i~~~L~~~~~ 77 (623)
||+|++++|..+|+.+.++|+.||+.++++.... +.....|+.++|++|+++|+..|+. ++.||..+++++..+..
T Consensus 296 mG~RlL~~wl~~PL~~~~~I~~Rld~Ve~l~~~~~l~~~L~~~L~~v~DleRl~~Rl~~~~~-~~rDl~~l~~~l~~~~~ 374 (843)
T COG0249 296 MGSRLLKRWLLQPLLDKEEIEERLDAVEELKDNPELREKLREMLKKVPDLERLLSRLSLGRA-SPRDLLRLRDSLEKIPE 374 (843)
T ss_pred hhHHHHHHHhhCcccCHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCcCHHHHHHHHHcCCC-ChhhHHHHHHHHHHHHH
Confidence 8999999999999999999999999999998843 3566789999999999999999997 89999999999999999
Q ss_pred HHHHHHHhhhccCCcccccchHHHHHhcCCChhHHHHHHhhhhccCCC------cccCCcCHHHHHHHHHHHHHHHHHHH
Q 006974 78 VWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLL------IILDRASEDLELIRAERKRNMENLDS 151 (623)
Q Consensus 78 l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~~I~~~Id~~~~------~I~d~as~~L~~iR~~~~~~~~~l~~ 151 (623)
++..+..... ...+..+...+..++.+.++...+..+|.+++. .|+++++++|+.+|...+...+.+.+
T Consensus 375 i~~~l~~~~~-----~~~l~~~~~~i~~~~~~~e~~~ll~~~i~~~~~~~~~~~ii~~g~~~eLd~lr~~~~~~~~~i~~ 449 (843)
T COG0249 375 IFKLLSSLKS-----ESDLLLLLEDIESLDYLAELLELLETAINEDPPLAVRDGIIKEGYNIELDELRDLLNNAKEWIAK 449 (843)
T ss_pred HHHHHhcccc-----chhhhHHhhhhhccccHHHHHHHHHHHhhhcchhhcchhHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 9998875421 111223333233455566899999999986543 68999999999999988755555544
Q ss_pred HHHHHHHHHHHhcCCCCcccccccC-ceEEEEccccccCCCCcEEEEEecCCcEEEeccchhhhhhHHHHHHhHHHHHHH
Q 006974 152 LLKKVAAQIFQAGGIDKPLITKRRS-RMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEE 230 (623)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~i~~~~~-r~~i~v~~~~~~~~~~g~~~~~s~sg~~~~~ep~~~~~l~~~~~~l~~~~~~ee 230 (623)
+. .......|++...+.+++- +|+|.|+......+|++|++.++.++..+|.+|+ +.+++.++..++......|
T Consensus 450 le----~~~r~~~gi~slki~~n~v~Gy~ievt~~~~~~~p~~~ir~qt~kn~~rf~t~e-l~~~e~~i~~a~~~i~~lE 524 (843)
T COG0249 450 LE----LEERERTGIKSLKIKYNKVYGYYIEVTKSNAKLVPDDYIRRQTLKNAERFTTPE-LKELEEKLLDAEEKILALE 524 (843)
T ss_pred HH----HHHHHhcCCchhhhhhhccceeEEEechhccccCchHHHHHHHHhcceEecCHH-HHHHHHHHHHHHHHHHHHH
Confidence 43 3344567888877777765 8999999999999998899999999999999985 7778888888888888899
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCcccceecCCCCCCCcceEEEcccccCccccchhhhccc
Q 006974 231 TAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSA 310 (623)
Q Consensus 231 ~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~ 310 (623)
.+++.++.+.+..+.+.|+.+...+|+|||++|+|.+|...+||||+|++.. .+.|++||||+++.. ...
T Consensus 525 ~~l~~~~~~~i~~~~~~l~~~a~aLa~lD~l~slA~~a~~~~y~rP~~~~~~------~l~i~~gRHPvvE~~-~~~--- 594 (843)
T COG0249 525 YELFDELREKILAHINELQALAKALAELDVLSSLAEIAAEQNYVRPEFVDSN------DLEIKEGRHPVVEAV-LDN--- 594 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceecCCC------CEEEEecCcchhhhh-ccC---
Confidence 9999999999999999999999999999999999999999999999999864 399999999999532 111
Q ss_pred ccCCCCCCCCCCCCCcEEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCC
Q 006974 311 ASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP 390 (623)
Q Consensus 311 ~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~ 390 (623)
.+||||+.+++..++++|||||||||||+||++|++++|||+|+||||+. +
T Consensus 595 ----------------------------~fVpNd~~L~~~~~i~lITGPNM~GKSTylRQvali~imAQiGsfVPA~~-A 645 (843)
T COG0249 595 ----------------------------GFVPNDIDLSGNRRIILITGPNMGGKSTYLRQVALIVILAQIGSFVPAEK-A 645 (843)
T ss_pred ----------------------------CcccCceeeCCCceEEEEECCCCCccHHHHHHHHHHHHHHHcCCCeeHHH-c
Confidence 17899999998559999999999999999999999999999999999996 8
Q ss_pred CccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEE
Q 006974 391 RLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVV 469 (623)
Q Consensus 391 ~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~-~~~vii 469 (623)
.++++|+||+++|..|++.++-|||+.+|.+++.|+..+++.+||||||.|+||++.+|.+|++|+++|+.+. ++.+||
T Consensus 646 ~i~ivD~IfTRiGa~DDL~~G~STFMvEM~Eta~IL~~AT~~SLvilDEiGRGTsT~DGlaIA~Av~eyL~~~~~~~tLF 725 (843)
T COG0249 646 RIGIVDRIFTRIGAADDLASGRSTFMVEMLETANILDNATERSLVILDEIGRGTSTYDGLAIAWAVLEYLHEKIGCRTLF 725 (843)
T ss_pred cccccceeeecccccchhhccccHHHHHHHHHHHHHHhCCCCcEEEEecccCCCCcchhHHHHHHHHHHHHhccCceEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 899999
Q ss_pred EcCchhHHhhccccceeeCceEEEe--cCccccccccccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHhhcchH
Q 006974 470 TTHYADLSCLKDKDTRFENAATEFS--LETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPER 542 (623)
Q Consensus 470 ~TH~~~l~~~~~~~~~i~~g~~~~~--~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a~~~~~~~~~~~ 542 (623)
+|||+++..+......+.|.+|... .+.+.+.|++.+|.++.|||+++|+++|+|.+|+++|++.+.+++...
T Consensus 726 ATHy~ELt~l~~~~~~v~N~h~~~~e~~~~i~Fl~kv~~G~a~~SyGi~VAklaGlP~~Vi~rA~~il~~le~~~ 800 (843)
T COG0249 726 ATHYHELTELEEKLPQVKNYHMSAVEEGGDITFLYKVKPGIADKSYGIHVAKLAGLPEEVIERAREILAELEKES 800 (843)
T ss_pred eccHHHHHHhhhcccccceeEEEEEEcCCceEEEEEeccCCCCccHHHHHHHHhCCCHHHHHHHHHHHHHHhhcc
Confidence 9999999999998888888887543 456889999999999999999999999999999999999998776544
No 7
>KOG0218 consensus Mismatch repair MSH3 [Replication, recombination and repair]
Probab=100.00 E-value=2.7e-53 Score=456.50 Aligned_cols=498 Identities=21% Similarity=0.291 Sum_probs=367.1
Q ss_pred chHhHhccCCCCCCCHHHHHHHHHHHHHHHHH------HhcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 006974 2 GHAVVQKAQIPFGKSLEESQKLLNQTSAALAM------MQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAV 75 (623)
Q Consensus 2 G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~~------~~~~~~~l~~i~Di~~~l~r~~~g~~l~~~eL~~i~~~L~~~ 75 (623)
|+|+||+|.+.|+-|..+|..||+.++|+-.. ++...--+..+||+.|.+.|+--|.|-+.+|++.+...+..+
T Consensus 495 G~RmLr~WvtkPLvd~~~I~eRLDAVeeitshssnS~vf~si~~~l~rlpDl~rgL~rIy~~tCtp~~eff~vlk~iy~a 574 (1070)
T KOG0218|consen 495 GLRMLREWVTKPLVDVHQIEERLDAVEEITSHSSNSIVFESINQMLNRLPDLLRGLNRIYYGTCTPRKEFFFVLKQIYSA 574 (1070)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCcHhHhhHHHHhcccCCcHHHHHHHHHHHHHH
Confidence 89999999999999999999999999998321 112234567899999999999999984448988877766654
Q ss_pred HHHHH----HHHHhhhccCCcccccchHHHHHhcC------CChhHHHHHHhhhhccCCC---cccC--------CcCHH
Q 006974 76 NNVWK----KLTEAAELDGDSLQRYSPLLELLKNC------NFLTELEEKIGFCIDCKLL---IILD--------RASED 134 (623)
Q Consensus 76 ~~l~~----~l~~~~~~~~~~~~~~~~l~~l~~~~------~~~~~L~~~I~~~Id~~~~---~I~d--------~as~~ 134 (623)
..-.. ++.........+...-+-|+.++..+ ...+++...++..-...+. .++| ....-
T Consensus 575 ~s~fq~~~~~~~~~~~s~~~s~~qS~LLrrlisel~~p~~~s~~~hfL~mln~~aa~~gnk~d~fkd~snfpl~~e~~di 654 (1070)
T KOG0218|consen 575 VSHFQMHQSYLEHFKSSDGRSGKQSPLLRRLISELNEPLSTSQLPHFLTMLNVSAAMEGNKDDQFKDFSNFPLYDESEDI 654 (1070)
T ss_pred HHHHHHHhhhhhhhccccccchhccHHHHHHHHHhcCccccccHHHHHHHhhHHHHhhCChHHhhhhhccCcchhhhhhH
Confidence 43322 22211100011112234455566655 1233333333211111110 1222 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCceEEEEccccccCCCCcEEEEEecCCcEEEeccchhhh
Q 006974 135 LELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVE 214 (623)
Q Consensus 135 L~~iR~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~~~r~~i~v~~~~~~~~~~g~~~~~s~sg~~~~~ep~~~~~ 214 (623)
...||+.+. .+..++..|.+. ++++.... -.+.+..+..|||+|+.+....+|..|+--.|.....+|.+|. ++.
T Consensus 655 ~~virE~~m-s~~~~~~hLaei-Rk~Lk~pn--lef~~vsgv~flIEvkns~~kkiP~dWiKvnsTk~vsRfhtP~-iq~ 729 (1070)
T KOG0218|consen 655 IKVIRESEM-SRSQLKEHLAEI-RKYLKRPN--LEFRQVSGVDFLIEVKNSQIKKIPDDWIKVNSTKMVSRFHTPR-IQK 729 (1070)
T ss_pred HHHHHHHHH-HHHHHHHHHHHH-HHHhcCCC--ceeEEecCeeEEEEecccccccCCccceeeccceeeeecCCHH-HHH
Confidence 122222111 111122233332 22332222 2233344558999999888888998999888877778888885 555
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCcccceecCCCCCCCcceEEEcc
Q 006974 215 FNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEG 294 (623)
Q Consensus 215 l~~~~~~l~~~~~~ee~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~ 294 (623)
+-.++....+.-..+-...++..-+.+.+|..+++++...+|.+||++|+|+.+...|||||+|+++- ..|.|++
T Consensus 730 ~l~eL~~~~e~L~i~sea~~~sFL~kiSehYtelrkat~~LatlDCi~SlA~~s~n~nYvRPtfvd~~-----~eI~ikn 804 (1070)
T KOG0218|consen 730 LLQELEYYKELLIIESEAQYKSFLNKISEHYTELRKATLNLATLDCILSLAATSCNVNYVRPTFVDGQ-----QEIIIKN 804 (1070)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCcccccch-----hhhhhhc
Confidence 55555444443333445677888888999999999999999999999999999999999999999852 3699999
Q ss_pred cccCccccchhhhcccccCCCCCCCCCCCCCcEEEceeeeecCCccccccccccC-CceEEEEEcCCCCCHHHHHHHHhh
Q 006974 295 IKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVEC-ETRVVVITGPNTGGKTASMKTLGL 373 (623)
Q Consensus 295 ~rHPll~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v~i~l~l~~-g~~~~~I~GpNgsGKSTlLk~igl 373 (623)
||||+++ ..+. +.+||+++.+.+ |.++.+||||||||||.++|+++|
T Consensus 805 gRhPvIe-~Ll~-------------------------------d~fVPNdi~ls~egerc~IITGPNMGGKSsyIrQvAL 852 (1070)
T KOG0218|consen 805 GRHPVIE-SLLV-------------------------------DYFVPNDIMLSPEGERCNIITGPNMGGKSSYIRQVAL 852 (1070)
T ss_pred CCCchHH-HHhh-------------------------------hccCCCcceecCCCceEEEEeCCCCCCchHHHHHHHH
Confidence 9999994 2221 136888877754 458999999999999999999999
Q ss_pred hhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHH
Q 006974 374 ASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALA 453 (623)
Q Consensus 374 ~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~ 453 (623)
+.+|||+|+|||++. +.+++||.+|++||..|++..+-|||+.+|.....++..++..++|||||.|+||...+|.+|+
T Consensus 853 itIMAQiGsfVPAee-a~l~IfdgvltRmGAsDnI~~grSTFm~Emldt~eil~kat~~SlvilDElGRGTsThDGiAIs 931 (1070)
T KOG0218|consen 853 ITIMAQIGSFVPAEE-ARLSIFDGVLTRMGASDNIINGRSTFMVEMLDTLEILKKATKRSLVILDELGRGTSTHDGIAIS 931 (1070)
T ss_pred HHHHHHhcCccchHH-hhhhHHhhHHHhhccccccccchhHHHHHHHHHHHHHHhcccchhhhhHhhcCCCccccchhHH
Confidence 999999999999996 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC-CcEEEEEcCchhHHhhccccce-eeCceEEEe---------cCccccccccccCCCCCcHHHHHHHHCC
Q 006974 454 TSILQYLRDR-VGLAVVTTHYADLSCLKDKDTR-FENAATEFS---------LETLRPTYRILWGSTGDSNALNIAKSIG 522 (623)
Q Consensus 454 ~all~~l~~~-~~~vii~TH~~~l~~~~~~~~~-i~~g~~~~~---------~~~l~~~y~l~~g~~~~s~a~~ia~~~g 522 (623)
.|.++|+.+. .+.++|||||+.+..+...... +.|.+|.|- .+.+.++|++..|.+..||++++|++++
T Consensus 932 YAtL~yf~~~~k~l~LFvTHfP~l~eie~~f~gqv~nyHmgyl~sedk~~~d~dsVtfLYklvrGlasrSyGlnVAklA~ 1011 (1070)
T KOG0218|consen 932 YATLKYFSELSKCLILFVTHFPMLGEIESGFPGQVRNYHMGYLESEDKTGEDWDSVTFLYKLVRGLASRSYGLNVAKLAR 1011 (1070)
T ss_pred HHHHHHHHHhhceeEEeeecCcchhhhhcCCCccccceeeeeeeeccccCCCchhhhhHHHHhhhhhhccccccHHHHhC
Confidence 9999999875 5688999999998887765543 566676552 3457789999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcchH
Q 006974 523 FDRKIIQRAQKLVERLRPER 542 (623)
Q Consensus 523 ~~~~i~~~a~~~~~~~~~~~ 542 (623)
+|.+++.||....++++++.
T Consensus 1012 ip~sii~rA~siSeeleke~ 1031 (1070)
T KOG0218|consen 1012 IPKSIINRAFSISEELEKES 1031 (1070)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 99999999999877654443
No 8
>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=1.1e-48 Score=428.79 Aligned_cols=490 Identities=20% Similarity=0.282 Sum_probs=393.1
Q ss_pred CchHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHh----cCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 006974 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQ----SQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVN 76 (623)
Q Consensus 1 ~G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~~~~----~~~~~l~~i~Di~~~l~r~~~g~~l~~~eL~~i~~~L~~~~ 76 (623)
||.++++.|.-+|..+...++.+++.+.+.++..+ -..--+..+||+.++..++-. -+..|...+.+....+.
T Consensus 326 ~G~rll~~w~~qpL~~~~ri~~r~d~v~~l~~~~~~rq~L~~~lL~~~pdi~rl~~~l~~---~~L~d~~r~yq~~~~l~ 402 (902)
T KOG0219|consen 326 QGERLLRQWLKQPLRDIDRINERHDLVEALVEDAEIRQKLRDDLLRRIPDISRLARRLMK---ANLQDVNRIYQAAKLLP 402 (902)
T ss_pred cchhhhhhhhhcchHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhhcChhHHHhhhhhhh---cchHHHHHHHHHHHHhH
Confidence 69999999999999999999999999988766443 123456789999999999872 25578888887777777
Q ss_pred HHHHHHHHhhhccCCcccccchHHHHHhcCCChhHHHHHHhhhhcc-----CCCcccCCcCHHHHHHHHHHHHHHHHHHH
Q 006974 77 NVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDC-----KLLIILDRASEDLELIRAERKRNMENLDS 151 (623)
Q Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~~I~~~Id~-----~~~~I~d~as~~L~~iR~~~~~~~~~l~~ 151 (623)
.+...|.+..+-... + ...++.. ....+..+...+..++|. +-..|+.+++++|.+||+++.+++.++.+
T Consensus 403 ~~~~~l~~~~~~~~~-l-l~~~l~~---~~~~~~kf~~~ve~t~D~da~ee~ey~VR~eFdeeL~eLrq~LdeL~~~m~~ 477 (902)
T KOG0219|consen 403 TVVQVLISLSESHNR-L-LKSPLTE---HLKKLEKFQEMVETTVDLDAEEENEYRVRVDFDEELQELREKLDELERKMEK 477 (902)
T ss_pred HHHHHHHhhhhhhhh-h-hhhhhhh---hhhhHHHHHHHHHHHhhHhHHhcCcEEEecccCHHHHHHHHHHHHHHHHHHH
Confidence 666555443210000 0 1113322 233455666677777763 33469999999999999999999999998
Q ss_pred HHHHHHHHHHHhcCCCCccccccc---CceEEEEccccccCC--CCcEEEEEecCCcEEEeccchhhhhhHHHHHHhHHH
Q 006974 152 LLKKVAAQIFQAGGIDKPLITKRR---SRMCVGIKASHKYLL--PDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSE 226 (623)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~i~~~~---~r~~i~v~~~~~~~~--~~g~~~~~s~sg~~~~~ep~~~~~l~~~~~~l~~~~ 226 (623)
..+++....-+.+ +..+...+ .+||+.+.......+ ..++..-++..| .+|++....-.|||+....+.+.
T Consensus 478 ~hkrv~~dl~~D~---~kklkLe~~~~~G~~~RlTr~e~~~LR~~k~y~eLstqK~-GV~FTtk~L~slN~e~~~~qk~Y 553 (902)
T KOG0219|consen 478 LHKKVSADLGLDP---KKQLKLENSAQFGWYFRVTRKEEKVLRKKKNYTELSTQKG-GVKFTTKKLSSLNDEFMSLQKEY 553 (902)
T ss_pred HHHHHHhhcCCCc---ccceeeeccchhheeeeeeehhhhHhhccCCceEEEEeeC-cEEEEhhhHhhhHHHHHHHHHHH
Confidence 8888755432211 22233333 378988876432211 235554444445 57888888999999999988888
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HCCcccceecCCCCCCCcceEEEcccccCccccch
Q 006974 227 IAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQ--WMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSS 304 (623)
Q Consensus 227 ~~ee~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~--~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~ 304 (623)
+..+..|.+++..--..|.+.|..+...+|+||++.|+|..|. -..|+||.+.+.+ ...+.++++|||+++...
T Consensus 554 ~~~Q~~ivrevikia~tY~Ppleal~~vlAhLDv~~SFa~~st~a~~pYvRP~~l~~g----s~rl~l~~~rHp~lE~Qd 629 (902)
T KOG0219|consen 554 DEAQNEIVREIIKIAATYTPPLEALNQVLAHLDVFVSFAHAATVAPIPYVRPKLLPLG----SKRLELKQSRHPVLEGQD 629 (902)
T ss_pred HHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhheeehhhcccCCCCccCccccccc----hhHHHHHhcccchhhccc
Confidence 8888899999999999999999999999999999999999886 4579999998754 236899999999995431
Q ss_pred hhhcccccCCCCCCCCCCCCCcEEEceeeeecCCcccccccccc--CCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhce
Q 006974 305 LRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVE--CETRVVVITGPNTGGKTASMKTLGLASLMSKAGL 382 (623)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v~i~l~l~--~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~ 382 (623)
. -.++|+|..++ ++ ++++||||||+||||++|+.|.+++|||+|+
T Consensus 630 --~------------------------------~~fIpNdv~le~~~~-~~~IiTGpNMGGKSTyir~~Gvi~lmAQIGc 676 (902)
T KOG0219|consen 630 --E------------------------------IPFIPNDVVLEKGKC-RMLIITGPNMGGKSTYIRQVGVIVLMAQIGC 676 (902)
T ss_pred --c------------------------------CCCCCCccccccCCc-eEEEEeCCCcCccchhhhhhhHHHHHHHhCC
Confidence 1 02677777777 55 8999999999999999999999999999999
Q ss_pred eecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 006974 383 YLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD 462 (623)
Q Consensus 383 ~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~ 462 (623)
|||++. +.++++|.|++++|.+|+..+++||||.+|-..+.|+..+++.+|+++|||++||...+|-.+++|+-+++..
T Consensus 677 fVPce~-A~i~IvD~Il~RVGA~D~q~kG~STFM~Emleta~Ilr~at~~SliiiDELGRGTSt~DGfgiAwai~ehi~~ 755 (902)
T KOG0219|consen 677 FVPCES-ATISIVDGILTRVGAGDSQLKGISTFMAEMLETASILRRATKNSLIIIDELGRGTSTYDGFGIAWAIAEHIAT 755 (902)
T ss_pred ceehhh-cCCchhhHHHhhhccchhhhcchHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCceeccCccHHHHHHHHHHH
Confidence 999996 8999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred C-CcEEEEEcCchhHHhhccccceeeCceEEEe--cCccccccccccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHhhc
Q 006974 463 R-VGLAVVTTHYADLSCLKDKDTRFENAATEFS--LETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLR 539 (623)
Q Consensus 463 ~-~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~--~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a~~~~~~~~ 539 (623)
+ ++..||+||++++..++.....+.|-+|... .+.+.-.|++..|+++.|+++.+|+.+|+|+.+++.|+...++++
T Consensus 756 ki~cf~lfATHfhElt~lae~~~~vKn~h~~a~i~~~~~~llY~V~~Gv~d~SFGi~VA~~a~fp~~vie~A~~~~~ele 835 (902)
T KOG0219|consen 756 KIGCFCLFATHFHELTKLAEQLPTVKNLHVTAQIENDDITLLYKVFEGVCDQSFGIHVAELVGFPEHVIEMAKQKAEELE 835 (902)
T ss_pred HHhHhHHHHhHHHHHHhhhhhhhhhhhheeeeEecCcchhhHHHHhcccccCcchhhHHHHcCCChHHHHHHHHHHHHHH
Confidence 5 6788999999999999988888888777554 456777899999999999999999999999999999999877654
Q ss_pred c
Q 006974 540 P 540 (623)
Q Consensus 540 ~ 540 (623)
.
T Consensus 836 ~ 836 (902)
T KOG0219|consen 836 D 836 (902)
T ss_pred H
Confidence 3
No 9
>KOG0221 consensus Mismatch repair ATPase MSH5 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=5.1e-46 Score=395.46 Aligned_cols=487 Identities=22% Similarity=0.257 Sum_probs=385.3
Q ss_pred chHhHhccCCCCCCCHHHHHHHHHHHHHHHH-----HHhcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 006974 2 GHAVVQKAQIPFGKSLEESQKLLNQTSAALA-----MMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVN 76 (623)
Q Consensus 2 G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~-----~~~~~~~~l~~i~Di~~~l~r~~~g~~l~~~eL~~i~~~L~~~~ 76 (623)
|++.||.|+..|.+|+.++..|++-+.-++. ..+..+-.++.++|+-.+++++..|.. ...++-.+++++.++-
T Consensus 281 g~k~Lr~Wf~nPttd~~~l~sR~~~i~~fl~~qNa~~~~~Ls~~lgr~k~~~~~~~~~~sg~t-~l~~W~~~~stv~~~~ 359 (849)
T KOG0221|consen 281 GEKLLRLWFTNPTTDLGELSSRLDVIQFFLLPQNADMAQMLSRLLGRIKNVPLILKRMKSGHT-KLSDWQVLYSTVYSAL 359 (849)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhcccHHHHHHHHhcCCc-eechHHHHHHHHHHHH
Confidence 8899999999999999999999997765532 111345678899999999999999887 6789999999999998
Q ss_pred HHHHHHHHhhhccCCcccccchHHHHHh-cCCChhHHHHHHhhhhccCC------CcccCCcCHHHHHHHHHHHHHHHHH
Q 006974 77 NVWKKLTEAAELDGDSLQRYSPLLELLK-NCNFLTELEEKIGFCIDCKL------LIILDRASEDLELIRAERKRNMENL 149 (623)
Q Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~L~~~I~~~Id~~~------~~I~d~as~~L~~iR~~~~~~~~~l 149 (623)
.+++..++..- + ..++. ...+ -++.+.++...+..+||-++ ..|.++.+|+|+++|+.+. .+
T Consensus 360 ~i~~~~rslp~----s-~~~~~--~~~~~~~~~l~eia~~~g~vIdF~~S~~~~r~Tv~~giD~elDE~r~~y~----~l 428 (849)
T KOG0221|consen 360 GIRDACRSLPQ----S-IQLFR--DIAQEFSDDLHEIASLIGKVIDFEGSLAENRFTVLPGIDPELDEKRRRYM----GL 428 (849)
T ss_pred HHHHHHHhCcc----c-hhhhh--HHHHHHHHHHHHHHHHhhheeccccccccceEEecCCCChHHHHHHHHHc----cc
Confidence 88888775321 0 01111 1111 13356678888888898543 3588999999999998765 56
Q ss_pred HHHHHHHHHHHHHh---cCCCCcccccccCceEEEEccccccCCC----CcEEEEEecCCcEEEeccchhhhhhHHHHHH
Q 006974 150 DSLLKKVAAQIFQA---GGIDKPLITKRRSRMCVGIKASHKYLLP----DGIALNVSSSGATYFMEPKGAVEFNNMEVRL 222 (623)
Q Consensus 150 ~~~l~~~~~~~~~~---~~~~~~~i~~~~~r~~i~v~~~~~~~~~----~g~~~~~s~sg~~~~~ep~~~~~l~~~~~~l 222 (623)
..+|.+++++.... ...+-..|.+---+|++.|+.-+.-... .||-.-.+ +...+|+......+|.+.+.++
T Consensus 429 p~~Lt~vAr~e~~~L~~~~psv~~VYIPliGfllsiprl~~~~~~~d~~~~~~~mf~-s~E~l~~rnart~eLD~~~GDI 507 (849)
T KOG0221|consen 429 PSFLTEVARKELENLDSRIPSVSVVYIPLIGFLLSIPRLPSMVEASDFENGLDFMFL-SEEKLHYRNARTKELDALLGDI 507 (849)
T ss_pred hHHHHHHHHHHHHhhCCCCCceeEEEeeceeeEEecccccchhhcCCcccchHHHhc-ccceeEeecccHHhHHHHhhhH
Confidence 66777766654331 1222334444445777776654322111 13333232 3446677777788999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCcccceecCCCCCCCcceEEEcccccCcccc
Q 006974 223 SNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLG 302 (623)
Q Consensus 223 ~~~~~~ee~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~ 302 (623)
.-+...-|..|+..|..+|......|........+||+++|+|..|.+++|.||.++++. -.+.|.+||||+.+.
T Consensus 508 y~~i~D~et~i~~~Lq~qvl~rk~~lt~~l~laSrldvLls~a~~aa~~gy~~P~lv~e~-----~il~I~ngrh~l~e~ 582 (849)
T KOG0221|consen 508 YCEIRDQETLIMYQLQCQVLARKAVLTRVLDLASRLDVLLSLASAAADYGYSRPRLVPEV-----LILRIQNGRHPLMEL 582 (849)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccHH-----HHHHHHcCChhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999863 247999999999843
Q ss_pred chhhhcccccCCCCCCCCCCCCCcEEEceeeeecCCcccccccccc-CCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhc
Q 006974 303 SSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVE-CETRVVVITGPNTGGKTASMKTLGLASLMSKAG 381 (623)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v~i~l~l~-~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G 381 (623)
. .+ .+||++..+. .+.++.+|||||.||||.+||++|++++|+|+|
T Consensus 583 ~-~d--------------------------------tfvPNst~iggdkgri~vITGpNasGKSiYlkqvglivfLahIG 629 (849)
T KOG0221|consen 583 C-AD--------------------------------TFVPNSTEIGGDKGRIKVITGPNASGKSIYLKQVGLIVFLAHIG 629 (849)
T ss_pred H-HH--------------------------------hcCCCceeecCCCceEEEEeCCCCCCceEEEeechhhhHHHhhc
Confidence 2 11 2678888886 334999999999999999999999999999999
Q ss_pred eeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 006974 382 LYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR 461 (623)
Q Consensus 382 ~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~ 461 (623)
+|||++. +.++.+|+|+++++..+++....|||+-...|++.++..|+..+|+|+||.|.||+..+|-.|..+++.++.
T Consensus 630 sFVPAe~-A~IGivDrI~tri~s~esv~~gqSTFmiD~~Qva~aLr~AT~~SLvlIDEfGKGT~tedGlsLlasvm~~w~ 708 (849)
T KOG0221|consen 630 SFVPAEE-AEIGIVDRIFTRIHSCESVSLGQSTFMIDLNQVAKALRNATAQSLVLIDEFGKGTNTEDGLSLLASVMRHWL 708 (849)
T ss_pred cccchhh-hhcchHHHHHHHhhhhhhhhhhhhHHHHhHHHHHHHHHHhhcCcEEEEhhccCCccccccHHHHHHHHHHHH
Confidence 9999996 899999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCc---EEEEEcCchhHHhh--ccccceeeCceEE---EecCccccccccccCCCCCcHHHHHHHHCCCCHHHHHHHHH
Q 006974 462 DRVG---LAVVTTHYADLSCL--KDKDTRFENAATE---FSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQK 533 (623)
Q Consensus 462 ~~~~---~vii~TH~~~l~~~--~~~~~~i~~g~~~---~~~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a~~ 533 (623)
..|. +|++.||++++... ....+.+.-..|. .+.+.+.+.|++.+|....|+|+.+|+..|+|++++.||++
T Consensus 709 ~rg~~~PrifvcThfheL~ne~~L~~n~i~qfltm~vlr~~ge~I~flyrv~~gl~k~sfal~~ak~~glp~~vV~Ra~~ 788 (849)
T KOG0221|consen 709 ARGPTCPRIFVCTHFHELVNEQLLPQNPIVQFLTMEVLREDGEDIVFLYRVCEGLAKASFALHTAKQAGLPDKVVARAKE 788 (849)
T ss_pred hcCCCCCeEEEeccHHHhhhhccCCcchhhhhhhHHHHHhccCCeEEEEEeccchhhhcccchhHhhcCCCHHHHHHHHH
Confidence 7764 59999999997642 1221111111111 24567899999999999999999999999999999999999
Q ss_pred HHHhhcc
Q 006974 534 LVERLRP 540 (623)
Q Consensus 534 ~~~~~~~ 540 (623)
.......
T Consensus 789 v~~ai~s 795 (849)
T KOG0221|consen 789 VSDAIRS 795 (849)
T ss_pred HHHHHHc
Confidence 8765433
No 10
>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=1.1e-45 Score=412.58 Aligned_cols=498 Identities=18% Similarity=0.212 Sum_probs=379.4
Q ss_pred CchHhHhccCCCCCCCHHHHHHHHHHHHHHHH--HHh-cCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 006974 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA--MMQ-SQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77 (623)
Q Consensus 1 ~G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~--~~~-~~~~~l~~i~Di~~~l~r~~~g~~l~~~eL~~i~~~L~~~~~ 77 (623)
+|+|+++.|...|+-+.+.|++|++.+.-+.. ... +..-.|..+||++|+|.|+-.++.-...++.+..++|..++.
T Consensus 574 fGKRllk~Wl~~Pl~~~~~I~~R~dav~~l~~~~~~~~~~~e~l~klPDlERlL~Rih~~~~~~~k~i~~f~rvLegfk~ 653 (1125)
T KOG0217|consen 574 FGKRLLKTWLMAPLCDKEDIKQRQDAVDSLGKAPMDRTKVGETLKKLPDLERLLVRIHNGGEKNKKKIADFIRVLEGFKE 653 (1125)
T ss_pred HHHHHHHHHhhCcCCCHHHHHHHHHHHHHHhcCchhHHHHHHHHhhCCcHHHHHHHHHhcCccchhHHHHHHHHHHHHHH
Confidence 69999999999999999999999998887666 111 445678899999999999988776457788888888888777
Q ss_pred HHHHHHHhhhccCCcccccchHHHHHhcCCChhHHHHHHhhhhcc-----CCCcccC--CcCHHHHHHHHHHHHHHHHHH
Q 006974 78 VWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDC-----KLLIILD--RASEDLELIRAERKRNMENLD 150 (623)
Q Consensus 78 l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~~I~~~Id~-----~~~~I~d--~as~~L~~iR~~~~~~~~~l~ 150 (623)
+...+........ .......+..++..++.+..-.+.-..+.|. + +.|-+ +++.+++..-+.++++...+.
T Consensus 654 ~~~~~~~~~~v~~-~~~~~~~is~~~~~~p~~~~~i~~~~~af~r~~a~~e-g~i~P~~Gfd~eyD~a~k~~~e~e~~L~ 731 (1125)
T KOG0217|consen 654 INKLLGSLINVLK-EGEGLRLISELLESMPNLSEEIENWTEAFDRVKAVKE-GVIVPLEGFDEEYDEAMKRVDEAENELL 731 (1125)
T ss_pred HHHHHHHHHHHHH-hhHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhc-CccCCCccccHHHHHHhhHHHHHHHHHH
Confidence 7666543221000 0001112223333333333333333344443 2 23443 578889988888887777777
Q ss_pred HHHHHHHHHHHHhcCCCCcccccccCceEEEEccccccCCCCcEEEEEecCCcEEEeccchhhhhhHHHHHHhHHHHHHH
Q 006974 151 SLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEE 230 (623)
Q Consensus 151 ~~l~~~~~~~~~~~~~~~~~i~~~~~r~~i~v~~~~~~~~~~g~~~~~s~sg~~~~~ep~~~~~l~~~~~~l~~~~~~ee 230 (623)
.+|..+..++- .. .-.+.+.-.+.|.+.|+.+....++..|+..++..|...|+.|..- .+-..+.+.+.......
T Consensus 732 ~~L~~~rk~l~--c~-si~~~~vGk~~y~lEvP~n~~~~s~~~~~~~S~~Kg~~RY~tp~~~-kli~~l~~aee~~~~~~ 807 (1125)
T KOG0217|consen 732 AYLEEYRKRLG--CS-SIVFVDVGKDVYQLEVPENGGVPSSLRYELMSAKKGVSRYYTPDLR-KLIAHLDEAEERKKSSL 807 (1125)
T ss_pred HHHHHHHHhcC--CC-ceeEeecCceEEEEecCcccCCCCchHHHHHHhhcCcccccCHHHH-HHHHHHHHHHHHHHHHH
Confidence 77776544321 11 0112333335799999998877776568888899999999999621 22222222222233334
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHCC--cccceecCCCCCCCcceEEEcccccCccccchhhhc
Q 006974 231 TAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMD--GVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSL 308 (623)
Q Consensus 231 ~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~--~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~ 308 (623)
..+.+.+.....++....+.++..++.|||+++.|.+|..++ +|||++++..+ .+..+.+++.|||++.....
T Consensus 808 ~d~~~r~~~~f~~~~~~w~~tv~~~a~iD~l~sla~~s~~~~~~~Crp~i~~~~d--t~~~l~~~~~~Hpcfsl~s~--- 882 (1125)
T KOG0217|consen 808 SDLKRRLIVRFDEHYIIWQATVKALASIDCLLSLAETSKGLGGPMCRPEIVESTD--TPGFLIVKGLRHPCFSLPST--- 882 (1125)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccceeecccC--CCceeEEecccCceeecCcC---
Confidence 467778888888888999999999999999999999998876 69999987532 22369999999999943211
Q ss_pred ccccCCCCCCCCCCCCCcEEEceeeeecCCcccccccccc-CCc-eEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecC
Q 006974 309 SAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVE-CET-RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPA 386 (623)
Q Consensus 309 ~~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v~i~l~l~-~g~-~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~ 386 (623)
++.++|+++.+. .+. .+.++|||||+|||||||++++.++|||+|++||+
T Consensus 883 ----------------------------~~~fipN~v~~g~~~e~~~~llTGpNmgGKSTllRq~c~~vilaq~G~~VPa 934 (1125)
T KOG0217|consen 883 ----------------------------GTSFIPNDVELGGAEENREGLLTGPNMGGKSTLLRQACIAVILAQIGCDVPA 934 (1125)
T ss_pred ----------------------------CCccccchhhccccccceeeeeccCCcCCchHHHHHHHHHHHHHHhCCCccH
Confidence 123678888887 222 44559999999999999999999999999999999
Q ss_pred CCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCc
Q 006974 387 KNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVG 465 (623)
Q Consensus 387 ~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~ 465 (623)
.. ..++.+|+|++++|..|.+-.+.|||..+....+.|+..+++.+||++||.++||...+|.+|+.+++++|.. ..+
T Consensus 935 ~~-~~~tpidrI~tRlGA~D~im~g~STF~vELsET~~IL~~aT~~SLvi~DELGRGtst~DG~aIA~aVLe~l~~~i~c 1013 (1125)
T KOG0217|consen 935 EV-MELTPIDRIFTRLGANDDIMSGESTFFVELSETKKILKHATRHSLVIVDELGRGTSTFDGTAIAEAVLEHLSEGIQC 1013 (1125)
T ss_pred HH-hcccchHHHhhhcccccchhcCCceEEEeccchHHHHhhcCccceeeehhhcCcccccCCcchHHHHHHHHHhcccc
Confidence 86 7899999999999999999999999999999999999999999999999999999999999999999999997 467
Q ss_pred EEEEEcCchhHHhhccccceeeCceEEE--ecCc-cccccccccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHhh
Q 006974 466 LAVVTTHYADLSCLKDKDTRFENAATEF--SLET-LRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERL 538 (623)
Q Consensus 466 ~vii~TH~~~l~~~~~~~~~i~~g~~~~--~~~~-l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a~~~~~~~ 538 (623)
..+++|||+.+.....+.+.+..++|.. +.+. +.+.|++..|+++.||++++|+++|+|..|+++|.....++
T Consensus 1014 ~~fFSTHYhsl~~~~~~~p~Vrl~~Ma~~vd~e~~vtFLYkl~~G~cpkSyG~~vArmaglp~~vi~~a~~~a~E~ 1089 (1125)
T KOG0217|consen 1014 LGFFSTHYHSLCVDFMHHPQVRLLHMACVVDEEIDVTFLYKLEEGICPKSYGFNVARMAGLPDQVIDRAEIKAHEL 1089 (1125)
T ss_pred cCCccccccchhHhhhcCccccchhheeeecCCccEEEeehhccCCCCcchhHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 8899999999887767777777777754 4444 88999999999999999999999999999999998876543
No 11
>KOG0220 consensus Mismatch repair ATPase MSH4 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=4.8e-44 Score=386.81 Aligned_cols=481 Identities=19% Similarity=0.283 Sum_probs=375.2
Q ss_pred CchHhHhccCCCCCCCHHHHHHHHHHHHHHHHHH---hcCCCCCCCCcCHHHHHHHHhc----CCCCCH----HHHHHHH
Q 006974 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMM---QSQPLDLSTIEDIAGILNSAVS----GQLLSP----SEICAVR 69 (623)
Q Consensus 1 ~G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~~~---~~~~~~l~~i~Di~~~l~r~~~----g~~l~~----~eL~~i~ 69 (623)
||.+.+|+-+++|+++..-+..+++.+++...-- .++.+.++..+|....+..+.. ..+-.+ --+..++
T Consensus 294 ~g~r~lRssilqpl~d~~ti~~rleaiqeL~a~~~L~~~Lr~~~k~~~dld~~~s~~~~~~~~~~i~~~~s~I~~~~~Lk 373 (867)
T KOG0220|consen 294 GGYRRLRSSILQPLTDIETINMRLEAIQELLADEELFFGLRSVIKRFLDLDQLLSVLVQIPTQDTVNAAESKINNLIYLK 373 (867)
T ss_pred cchhhHHhhhcccccchhhhhHHHHHHHHHhcCchHhhhhHHHHhhhhhHHHHHHHHHhhhhHHhhhcchhHHHHHHHHH
Confidence 6999999999999999999999999988886632 3788999999999888877531 111111 1245566
Q ss_pred HHHHHHHHHHHHHHHhhhccCCcccccchHHHHHhcCC--ChhHHHHHHhhhhccCC--------------CcccCCcCH
Q 006974 70 RTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCN--FLTELEEKIGFCIDCKL--------------LIILDRASE 133 (623)
Q Consensus 70 ~~L~~~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~L~~~I~~~Id~~~--------------~~I~d~as~ 133 (623)
.+|..+.-++..+.... .+.+.++.+.+. -+..+.+.|..+|+++. ..|+.+..-
T Consensus 374 ~tL~lv~~~~~al~~~~---------s~~~~e~~~~~~~~r~~~i~~~i~e~I~dd~l~a~~~l~~~~qkcyAvks~i~~ 444 (867)
T KOG0220|consen 374 HTLELVDPLKIALKNCN---------SNLLREYYGSFKDKRFGIILEKIKEVINDDALYAKGCLNLRTQKCYAVKSNING 444 (867)
T ss_pred HHHHHHHHHHHHHhhch---------hHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHhccchhhhhccceeeecccccH
Confidence 67777777776665321 234444544433 35667889999998642 146777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccc-CceEEEEccc----cccCCCCcEEEEEecCCcEEEec
Q 006974 134 DLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRR-SRMCVGIKAS----HKYLLPDGIALNVSSSGATYFME 208 (623)
Q Consensus 134 ~L~~iR~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~~-~r~~i~v~~~----~~~~~~~g~~~~~s~sg~~~~~e 208 (623)
-|+--|+-..++.........++..+. .+ .....+.+ -||.+.++.. .....| ..+...+....++-+.
T Consensus 445 ~LDiaR~ty~ei~~~~~~~i~~l~E~~----~~-nl~~~f~sarGF~~ri~~~~~~~~~~~lP-~~fi~~~~~~~~~~~~ 518 (867)
T KOG0220|consen 445 FLDIARRTYTEIVDDIAGMISQLGEKF----SL-NLRLSFSSARGFFIRITTDCIALPSDTLP-SEFIKISKVKNSYSFT 518 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc----Cc-cccccccccccEEEEeeccccccccccCc-hhhhhhhhhcceeeec
Confidence 888888776665544444444443332 11 12222222 2677766654 234455 3344444445555566
Q ss_pred cchhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCcccceecCCCCCCCcc
Q 006974 209 PKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDS 288 (623)
Q Consensus 209 p~~~~~l~~~~~~l~~~~~~ee~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~ 288 (623)
...++.+|.++.+...++.-.-..++.+|.+.+..+.+.+..+.+.+.-||+++++|......++++|+|++
T Consensus 519 s~~~ik~N~Rlk~~~~E~~l~te~~v~~lld~i~~~I~~L~~iae~~~~lD~l~sfa~~~~~~~y~~P~fT~-------- 590 (867)
T KOG0220|consen 519 SADLIKMNERLKEVLREIFLMTEMIVCKLLDEIYEHISCLYKLAEAVSMLDMLCSFAHACTLSDYVRPEFTD-------- 590 (867)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--------
Confidence 667788888877666666555567899999999999999999999999999999999998888999999987
Q ss_pred eEEEcccccCccccchhhhcccccCCCCCCCCCCCCCcEEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHH
Q 006974 289 SINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASM 368 (623)
Q Consensus 289 ~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlL 368 (623)
.+.|.+||||+|++-.. ++++.++..+..+.++.+|||||||||||+|
T Consensus 591 slaI~qGRHPILe~i~~--------------------------------ek~i~N~t~~t~~s~f~IITGPNMsGKSTYL 638 (867)
T KOG0220|consen 591 SLAIKQGRHPILEKISA--------------------------------EKPIANNTYVTEGSNFLIITGPNMSGKSTYL 638 (867)
T ss_pred ceeeccCCCchhhhhcc--------------------------------cCcccCcceeecccceEEEECCCCCcchHHH
Confidence 39999999999965321 1366777777777789999999999999999
Q ss_pred HHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHH
Q 006974 369 KTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSE 448 (623)
Q Consensus 369 k~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~ 448 (623)
|+++++++|||+|+|+|+.. +.+|+|++||+++|-.|.+.++-|+|..+|+..+.++..+++.+||+|||.++||..++
T Consensus 639 KQvAl~~IMAQIGc~IPA~Y-aS~pIf~RIFtRmg~nDele~NsS~F~sEMke~A~Ilq~a~~~SLiVlDELgR~TStee 717 (867)
T KOG0220|consen 639 KQVALCQIMAQIGSYVPAEY-ASFRVFKRIFTRMGTNDELERNSSTFMSEMKEAAYILQNANKNSLIVLDELGRGTSTEE 717 (867)
T ss_pred HHHHHHHHHHHhccCcchhh-ccchHHHHHHHHhcCchhhhhchhHHHHHHHHHHHHHHhCCcCcEEEEhhhccCCcccc
Confidence 99999999999999999985 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEec--Ccccc-ccccccCC-CCCcHHHHHHHHCCCC
Q 006974 449 GVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSL--ETLRP-TYRILWGS-TGDSNALNIAKSIGFD 524 (623)
Q Consensus 449 ~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~~--~~l~~-~y~l~~g~-~~~s~a~~ia~~~g~~ 524 (623)
|.++.+|+.+++.+-..+++++||+.++.+++...+.+.|.++..+. +.... .|+|..|. .+.-|++++++..-+|
T Consensus 718 GiaityAvCE~lL~LkayTflATHFldIa~lan~~paVdnlHF~~q~~eNssk~~k~kLsrg~~~~~~yG~~~vE~s~iP 797 (867)
T KOG0220|consen 718 GIAITYAVCEYLLSLKAYTFLATHFLDIAAIANYYPAVDNLHFLVQTDENSSKNKKYKLSRGLTEEKNYGLKAAEVSSLP 797 (867)
T ss_pred chhhHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcCccccceeeeeeecccchhhhhhhhhhhhhhcccccceEEEEecCC
Confidence 99999999999999889999999999999999999999998876543 22332 58888876 4556889999999999
Q ss_pred HHHHHHHHHHHHh
Q 006974 525 RKIIQRAQKLVER 537 (623)
Q Consensus 525 ~~i~~~a~~~~~~ 537 (623)
.+|++.|+.+..+
T Consensus 798 d~i~e~a~~~~t~ 810 (867)
T KOG0220|consen 798 DSIVEDAKEITTQ 810 (867)
T ss_pred HHHHHhhhHHHHH
Confidence 9999999987654
No 12
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=100.00 E-value=1.7e-42 Score=349.73 Aligned_cols=228 Identities=36% Similarity=0.637 Sum_probs=186.0
Q ss_pred cccceecCCCCCCCcceEEEcccccCccccchhhhcccccCCCCCCCCCCCCCcEEEceeeeecCCccccccccccCCc-
Q 006974 273 GVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECET- 351 (623)
Q Consensus 273 ~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v~i~l~l~~g~- 351 (623)
||+|+|+++. .+.++++|||+++.. +++ +.+||+|+.+..+.
T Consensus 1 y~~P~~~~~~------~l~i~~~~HPll~~~-~~~------------------------------~~~v~ndi~~~~~~~ 43 (235)
T PF00488_consen 1 YCRPKISEEK------SLKIKEGRHPLLEEK-LEN------------------------------KKFVPNDIELSNNKS 43 (235)
T ss_dssp EB-EEEESTT------EEEEEEE--TTHHHH-TTT------------------------------SSC--EEEEESSSSS
T ss_pred CcccEEcCCC------CEEEEeccCCEEecc-ccC------------------------------CceecceeecCCCce
Confidence 7999999864 799999999999542 111 13679999998874
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCC
Q 006974 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSR 431 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~ 431 (623)
++++|||||+|||||+||++|++++|||+|+|||++. +.+++||+|+++++..|++..+.|+|..++++++.++..+++
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~-~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~ 122 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAES-AEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATE 122 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSE-EEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--T
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecc-cccccccEEEeecccccccccccccHHHhHHHHHhhhhhccc
Confidence 6999999999999999999999999999999999996 899999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhHHhhccccceeeCceEEEe--cCccccccccccCC
Q 006974 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS--LETLRPTYRILWGS 508 (623)
Q Consensus 432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~--~~~l~~~y~l~~g~ 508 (623)
.+|||+||+++||+|.+|.+++.+++++|.+ .++.+|++||++++..+......+.+.+|.+. .+.+.++|++..|.
T Consensus 123 ~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~f~Ykl~~G~ 202 (235)
T PF00488_consen 123 KSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAELLERNPNVQNYHMEVEEDNDSLTFTYKLKEGI 202 (235)
T ss_dssp TEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGGHHHHSTTEEEEEEEEEEETTEEEEEEEEEES-
T ss_pred ceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHHHhhhCccccccceeeeeeccccceeEEEeECC
Confidence 9999999999999999999999999999998 48999999999998887766666666777654 46788999999999
Q ss_pred CCCcHHHHHHHHCCCCHHHHHHHHHHHHhh
Q 006974 509 TGDSNALNIAKSIGFDRKIIQRAQKLVERL 538 (623)
Q Consensus 509 ~~~s~a~~ia~~~g~~~~i~~~a~~~~~~~ 538 (623)
++.|+|+++|+.+|+|++++++|++..+.+
T Consensus 203 ~~~S~ai~iA~~~g~p~~II~rA~~i~~~l 232 (235)
T PF00488_consen 203 CSSSYAIEIAKLAGLPEEIIERAKEILKQL 232 (235)
T ss_dssp -SSTCHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999987754
No 13
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=6.7e-39 Score=321.30 Aligned_cols=196 Identities=29% Similarity=0.506 Sum_probs=177.9
Q ss_pred ccccccc--ccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccH
Q 006974 340 PVPIDIK--VECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG 417 (623)
Q Consensus 340 ~v~i~l~--l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~ 417 (623)
+|+++++ ...+ ++++|+|||||||||+||++|++.+|+|+|+|+|+.. +.++.++++++++|..++..++.|+||.
T Consensus 18 ~v~~~~~~~~~~~-~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~-~~~~~~~~il~~~~l~d~~~~~lS~~~~ 95 (222)
T cd03285 18 FIPNDVTLTRGKS-RFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDS-ADIPIVDCILARVGASDSQLKGVSTFMA 95 (222)
T ss_pred eEEeeEEEeecCC-eEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCccc-EEEeccceeEeeeccccchhcCcChHHH
Confidence 5544444 4456 8999999999999999999999999999999999986 7899999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhHHhhccccceeeCceEEEec-
Q 006974 418 HISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFSL- 495 (623)
Q Consensus 418 g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~~- 495 (623)
++++++.++..+++|+|+|||||++||++.++.++.+++++++.+ .++++|++||+.++..+|++...+.+|++.++.
T Consensus 96 e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 96 EMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 999988888778999999999999999999999999988888875 478999999998899999999999999987654
Q ss_pred ---CccccccccccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHh
Q 006974 496 ---ETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVER 537 (623)
Q Consensus 496 ---~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a~~~~~~ 537 (623)
+.+.|+|++.+|.++.|+|+.+|+++|+|++++++|+++.+.
T Consensus 176 ~~~~~~~~~Y~l~~G~~~~s~a~~~a~~~g~p~~vi~~A~~~~~~ 220 (222)
T cd03285 176 DASRTLTMLYKVEKGACDQSFGIHVAELANFPKEVIEMAKQKALE 220 (222)
T ss_pred CCCCcEeEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHh
Confidence 678899999999999999999999999999999999998764
No 14
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=4e-39 Score=321.10 Aligned_cols=190 Identities=31% Similarity=0.518 Sum_probs=173.6
Q ss_pred cccccccc--cCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccH
Q 006974 340 PVPIDIKV--ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG 417 (623)
Q Consensus 340 ~v~i~l~l--~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~ 417 (623)
+|++|+.+ .++ ++++|+||||+||||+++++|++++|+|+|+|||++. +.++++++++++++..|++..+.|+|+.
T Consensus 18 ~v~ndi~l~~~~~-~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~-~~i~~~~~i~~~~~~~d~~~~~~StF~~ 95 (218)
T cd03286 18 FVPNDVDLGATSP-RILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKS-MRLSLVDRIFTRIGARDDIMKGESTFMV 95 (218)
T ss_pred eEEeeeEEeecCC-cEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccc-cEeccccEEEEecCcccccccCcchHHH
Confidence 56555555 456 8999999999999999999999999999999999996 8999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchhHHhhccccceeeCceEEEec-
Q 006974 418 HISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFENAATEFSL- 495 (623)
Q Consensus 418 g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~~- 495 (623)
++++++.++..+++|+|+|||||++||||.++.++++++++++.+. ++++|++||++++.........+.+.+|.++.
T Consensus 96 e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~~~~~v~~~~m~~~~~ 175 (218)
T cd03286 96 ELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFHEHGGVRLGHMACAVK 175 (218)
T ss_pred HHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhhcCcceEEEEEEEEEe
Confidence 9999999999999999999999999999999999999999999986 89999999999977655555677888887643
Q ss_pred -------CccccccccccCCCCCcHHHHHHHHCCCCHHHHHHH
Q 006974 496 -------ETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRA 531 (623)
Q Consensus 496 -------~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a 531 (623)
+.+.|+|++.+|+++.|||+++|+++|+|++++++|
T Consensus 176 ~~~~~~~~~~~~~Ykl~~G~~~~s~al~~A~~~g~p~~vi~rA 218 (218)
T cd03286 176 NESDPTIRDITFLYKLVAGICPKSYGLYVALMAGIPDGVVERA 218 (218)
T ss_pred ccccCCCCceEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 578999999999999999999999999999999876
No 15
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=100.00 E-value=2.2e-38 Score=312.94 Aligned_cols=184 Identities=54% Similarity=0.839 Sum_probs=172.4
Q ss_pred cccccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHH
Q 006974 340 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHI 419 (623)
Q Consensus 340 ~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~ 419 (623)
++++||++.+|.++++|+||||||||||||++|++.+++|+|+++|+.....+++++++++.++..+++...+|+||+||
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg~~~~l~~~~s~fs~g~ 96 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFSSHM 96 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecCchhhhhcCcchHHHHH
Confidence 67999999998558999999999999999999999999999999999876788999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEecCccc
Q 006974 420 SRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLR 499 (623)
Q Consensus 420 ~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~~~~l~ 499 (623)
+++..+...+.+|+++|+|||++|||+..+..+...+++.+.+.+.++|++||+.++..++++...+.+|++.++.+.+.
T Consensus 97 ~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~~~~~ 176 (200)
T cd03280 97 KNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFDPETLK 176 (200)
T ss_pred HHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEecCccc
Confidence 98888877789999999999999999999999987788888877899999999988889999999999999999999999
Q ss_pred cccccccCCCCCcHHHHHHHHCCC
Q 006974 500 PTYRILWGSTGDSNALNIAKSIGF 523 (623)
Q Consensus 500 ~~y~l~~g~~~~s~a~~ia~~~g~ 523 (623)
++|++..|.++.|||+++|+++|+
T Consensus 177 ~~ykl~~G~~~~s~a~~~a~~~g~ 200 (200)
T cd03280 177 PTYRLLIGVPGRSNALEIARRLGL 200 (200)
T ss_pred EEEEEeECCCCCcHHHHHHHHcCC
Confidence 999999999999999999999985
No 16
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=2.1e-38 Score=316.75 Aligned_cols=188 Identities=31% Similarity=0.547 Sum_probs=171.1
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHH
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISR 421 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~r 421 (623)
++++.+..| ++++|+||||+||||+||++|++.+++++|+|+|+.. +.+++|++|+++++..|++..+.|+|+.++++
T Consensus 23 ~i~~~~~~g-~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~-~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~ 100 (222)
T cd03287 23 DIHLSAEGG-YCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASS-ATLSIFDSVLTRMGASDSIQHGMSTFMVELSE 100 (222)
T ss_pred eEEEEecCC-cEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCc-eEEeccceEEEEecCccccccccchHHHHHHH
Confidence 555666677 8999999999999999999999999999999999986 89999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchhHHhhcccc-ceeeCceEEEe-----
Q 006974 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKD-TRFENAATEFS----- 494 (623)
Q Consensus 422 l~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~l~~~~~~~-~~i~~g~~~~~----- 494 (623)
++.++..+++++|+|||||++|||+.++.+++.++++++.+. ++++|++||++++..+.... ..+.+.+|.++
T Consensus 101 ~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~~~~~~~v~~~~~~~~~~~~~ 180 (222)
T cd03287 101 TSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEILRRFEGSIRNYHMSYLESQKD 180 (222)
T ss_pred HHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHHHhcccCeEEEEEEEEEeccc
Confidence 999999999999999999999999999999999999999987 88999999999988776542 34667777654
Q ss_pred -----cCccccccccccCCCCCcHHHHHHHHCCCCHHHHHHH
Q 006974 495 -----LETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRA 531 (623)
Q Consensus 495 -----~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a 531 (623)
.+.+.|+|++.+|.++.|||+.+|+++|+|++++++|
T Consensus 181 ~~~~~~~~l~~~Ykl~~G~~~~s~a~~~a~~~g~p~~vi~rA 222 (222)
T cd03287 181 FETSDSQSITFLYKLVRGLASRSFGLNVARLAGLPKSIISRA 222 (222)
T ss_pred cccccCCcEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 2468899999999999999999999999999999886
No 17
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=100.00 E-value=8.3e-37 Score=305.02 Aligned_cols=194 Identities=29% Similarity=0.507 Sum_probs=179.8
Q ss_pred cccccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHH
Q 006974 340 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHI 419 (623)
Q Consensus 340 ~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~ 419 (623)
+|++++.+..+.++++|+|||||||||+||++|++.++++.|+++|+.. ..++++++++..++..|++..+.|+|..++
T Consensus 19 ~v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~-~~i~~~~~i~~~~~~~~~ls~g~s~f~~e~ 97 (216)
T cd03284 19 FVPNDTELDPERQILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASK-AEIGVVDRIFTRIGASDDLAGGRSTFMVEM 97 (216)
T ss_pred eEeeeEEecCCceEEEEECCCCCChHHHHHHHHHHHHHhccCCeecccc-ceecceeeEeccCCchhhhccCcchHHHHH
Confidence 5677777775558999999999999999999999999999999999986 789999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchhHHhhccccceeeCceEEEe--cC
Q 006974 420 SRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFENAATEFS--LE 496 (623)
Q Consensus 420 ~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~--~~ 496 (623)
.+++.++..+++|+++|||||++||++.++.++..++++++.+. ++++|++||+.++..+++....+.+++|.++ .+
T Consensus 98 ~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~ 177 (216)
T cd03284 98 VETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGG 177 (216)
T ss_pred HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCC
Confidence 99999999999999999999999999999999988899999887 8899999999999999998888999998874 56
Q ss_pred ccccccccccCCCCCcHHHHHHHHCCCCHHHHHHHHHH
Q 006974 497 TLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKL 534 (623)
Q Consensus 497 ~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a~~~ 534 (623)
.+.++|++..|.++.|||+.+|++.|+|++++++|+++
T Consensus 178 ~l~~~ykl~~G~~~~s~a~~~a~~~g~~~~ii~rA~~~ 215 (216)
T cd03284 178 GVVFLHKIVEGAADKSYGIEVARLAGLPEEVIERAREI 215 (216)
T ss_pred eEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHHHHHHh
Confidence 79999999999999999999999999999999999985
No 18
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=4e-36 Score=299.47 Aligned_cols=183 Identities=29% Similarity=0.459 Sum_probs=165.3
Q ss_pred cccccccccCCc-eEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHH
Q 006974 340 PVPIDIKVECET-RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGH 418 (623)
Q Consensus 340 ~v~i~l~l~~g~-~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g 418 (623)
+||+|+.++.+. ++++|+||||+|||||||++|++.+|+++|+++|+.. +.++++++++.+++..+++....|+|+.+
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~-~~~~~~d~i~~~l~~~~si~~~~S~f~~e 95 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADS-ATIGLVDKIFTRMSSRESVSSGQSAFMID 95 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCC-cEEeeeeeeeeeeCCccChhhccchHHHH
Confidence 789999998774 7999999999999999999999999999999999986 88999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC---CcEEEEEcCchhHHhhcc--ccceeeCceEEE
Q 006974 419 ISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR---VGLAVVTTHYADLSCLKD--KDTRFENAATEF 493 (623)
Q Consensus 419 ~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~---~~~vii~TH~~~l~~~~~--~~~~i~~g~~~~ 493 (623)
+++++.++.++.+++|+|||||++|||+.++.+++.++++++.+. +.++|++||+.++..... ....+.+.+|.+
T Consensus 96 l~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~~~~~~~~~~~~~~~ 175 (213)
T cd03281 96 LYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSLLPERLKIKFLTMEV 175 (213)
T ss_pred HHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhhhccCCceEEEEEEE
Confidence 999999999999999999999999999999999998899998765 248999999999776543 445677788876
Q ss_pred --e------cCccccccccccCCCCCcHHHHHHHHCCC
Q 006974 494 --S------LETLRPTYRILWGSTGDSNALNIAKSIGF 523 (623)
Q Consensus 494 --~------~~~l~~~y~l~~g~~~~s~a~~ia~~~g~ 523 (623)
+ .+.+.|+|++.+|+++.|||+++|+++|+
T Consensus 176 ~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~a~~~g~ 213 (213)
T cd03281 176 LLNPTSTSPNEDITYLYRLVPGLADTSFAIHCAKLAGI 213 (213)
T ss_pred EEcCCccCCCCcEEEEEEEeeCCCCCCHHHHHHHHcCC
Confidence 3 26799999999999999999999999985
No 19
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=5.4e-36 Score=296.26 Aligned_cols=179 Identities=27% Similarity=0.523 Sum_probs=162.6
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHH
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISR 421 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~r 421 (623)
+++++...| ++++|+||||+||||+||+++.+++|+++|+|+|+.. +.+++++++++.++..+++.++.|+||+|+++
T Consensus 21 ~~~~~~~~~-~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~-~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~ 98 (204)
T cd03282 21 DIYLTRGSS-RFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEY-ATLPIFNRLLSRLSNDDSMERNLSTFASEMSE 98 (204)
T ss_pred eeEEeeCCC-cEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhh-cCccChhheeEecCCccccchhhhHHHHHHHH
Confidence 566666777 8999999999999999999999999999999999986 78999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEec---Ccc
Q 006974 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSL---ETL 498 (623)
Q Consensus 422 l~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~~---~~l 498 (623)
+..+..++++|+|+|||||++||||.++.++..++++++.+.+.++|++||+.++...+.....+.+.+|.... +.+
T Consensus 99 ~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 178 (204)
T cd03282 99 TAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAILGNKSCVVHLHMKAQSINSNGI 178 (204)
T ss_pred HHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhhcCCCeEEEEEEEEEcCCCce
Confidence 99999999999999999999999999999999999999998899999999999988776655556666666542 678
Q ss_pred ccccccccCCCC-CcHHHHHHHHCC
Q 006974 499 RPTYRILWGSTG-DSNALNIAKSIG 522 (623)
Q Consensus 499 ~~~y~l~~g~~~-~s~a~~ia~~~g 522 (623)
.++|++..|.+. .+||+++|+.+.
T Consensus 179 ~~~ykl~~G~~~~~~~g~~~a~~~~ 203 (204)
T cd03282 179 EMAYKLVLGLYRIVDDGIRFVRVLA 203 (204)
T ss_pred eeEEEEeeCCCCCCccHHHHHHHhh
Confidence 899999999999 999999999764
No 20
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=100.00 E-value=1.6e-35 Score=288.95 Aligned_cols=181 Identities=38% Similarity=0.656 Sum_probs=168.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCCC
Q 006974 353 VVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRE 432 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~ 432 (623)
+++|||||||||||+||++|++.+++++|+|+|+.. +.+++++++++.++..+++.++.|+||+|+++++.++..+++|
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~-~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~ 79 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAES-AELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATEN 79 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehh-eEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCC
Confidence 478999999999999999999999999999999986 8999999999999999999999999999999999999989999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchhHHhhccccceeeCceEEEec--CccccccccccCCC
Q 006974 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFENAATEFSL--ETLRPTYRILWGST 509 (623)
Q Consensus 433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~~--~~l~~~y~l~~g~~ 509 (623)
+++|+|||++||||.++..+..++++++.++ ++++|++||+.++..+++....+.+++|.+.. +.+.++|++..|.+
T Consensus 80 ~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~Y~l~~G~~ 159 (185)
T smart00534 80 SLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPGVRNLHMSADEETENLTFLYKLTPGVA 159 (185)
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCccceEEEEEEEEecCceeEEEEEeECCC
Confidence 9999999999999999999998899998874 88999999999999999887788888887664 45889999999999
Q ss_pred CCcHHHHHHHHCCCCHHHHHHHHHH
Q 006974 510 GDSNALNIAKSIGFDRKIIQRAQKL 534 (623)
Q Consensus 510 ~~s~a~~ia~~~g~~~~i~~~a~~~ 534 (623)
+.+||+.+|++.|+|++++++|++.
T Consensus 160 ~~s~a~~~a~~~g~~~~i~~~a~~~ 184 (185)
T smart00534 160 GKSYGIEVAKLAGLPKEVIERAKEI 184 (185)
T ss_pred CCcHHHHHHHHhCCCHHHHHHHHHh
Confidence 9999999999999999999999874
No 21
>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family.
Probab=100.00 E-value=2.8e-34 Score=301.17 Aligned_cols=284 Identities=19% Similarity=0.194 Sum_probs=234.0
Q ss_pred CchHhHhccCCCCCCCHHHHHHHHHHHHHHHH--HH-hcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 006974 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA--MM-QSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77 (623)
Q Consensus 1 ~G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~--~~-~~~~~~l~~i~Di~~~l~r~~~g~~l~~~eL~~i~~~L~~~~~ 77 (623)
||+++|++|.+.|.++.++|+++++.++++.. .+ .....+|++++|+++++.++..|. +++.||..++.++..+.+
T Consensus 15 ~G~r~L~~wl~~Pl~~~~~I~~R~~~v~~~~~~~~l~~~l~~~L~~~~Di~~~l~~~~~~~-~~~~el~~l~~~l~~~~~ 93 (308)
T smart00533 15 MGKRLLRRWLLQPLLDLKEINERLDAVEELVENPELRQKLRQLLKRIPDLERLLSRIERGR-ASPRDLLRLYDSLEGLKE 93 (308)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhChHHHHHHHHHHccCCcHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999988 33 355668999999999999998886 599999999999999999
Q ss_pred HHHHHHHhhhccCCcccccchHHH-H----HhcCCChhHHHHHHhhhhccCCCcccCCcCHHHHHHHHHHHHHHHHHHHH
Q 006974 78 VWKKLTEAAELDGDSLQRYSPLLE-L----LKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSL 152 (623)
Q Consensus 78 l~~~l~~~~~~~~~~~~~~~~l~~-l----~~~~~~~~~L~~~I~~~Id~~~~~I~d~as~~L~~iR~~~~~~~~~l~~~ 152 (623)
+++++..... ..+.++.. + ...+..+.++...+..+++++.+.|+|+||++|+.+|+.++++...+++.
T Consensus 94 l~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~s~~Ld~lr~~~~~l~~~l~~~ 167 (308)
T smart00533 94 IRQLLESLDG------PLLGLLLKVILEPLLELLELLLELLNDDDPLEVNDGGLIKDGFDPELDELREKLEELEEELEEL 167 (308)
T ss_pred HHHHHHhcCc------HHHHHHHHhhccchHHHHHHHHHHhccCCcccccCCCeeCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999865311 00112211 1 11122333444445555555556899999999999999999998888888
Q ss_pred HHHHHHHHHHhcCCCCcccccccCceEEEEccccccCCCCcEEEEEecCCcEEEeccchhhhhhHHHHHHhHHHHHHHHH
Q 006974 153 LKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETA 232 (623)
Q Consensus 153 l~~~~~~~~~~~~~~~~~i~~~~~r~~i~v~~~~~~~~~~g~~~~~s~sg~~~~~ep~~~~~l~~~~~~l~~~~~~ee~~ 232 (623)
+++...+. ....++..+++.+ +|||+|+.+++..+| |.++..|++|.++|++|..++++|+++.++..++..++.+
T Consensus 168 ~~~~~~~~-~~~~l~~~~~~~~--g~~i~v~~~~~~~~~-~~~~~~s~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 243 (308)
T smart00533 168 LKKEREEL-GIDSLKLGYNKVH--GYYIEVTKSEAKKVP-KDFIRRSSLKNTERFTTPELKELENELLEAKEEIERLEKE 243 (308)
T ss_pred HHHHHHHh-CCCceEEeEeccE--EEEEEecchhhccCC-hHHHHHhhhcccceeeCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87765432 1123333344433 399999999999998 7788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCcccceecCCCCCCCcceEEEcccccCccc
Q 006974 233 ILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLL 301 (623)
Q Consensus 233 il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~ 301 (623)
|+++|+..+.++.+.+..+++.+++|||++|+|.+|.+++||+|.|++++ .+.+++||||+++
T Consensus 244 i~~~l~~~i~~~~~~l~~~~~~i~~lD~l~s~a~~a~~~~~~~P~i~~~~------~l~i~~~rHPlle 306 (308)
T smart00533 244 ILRELLEKVLEYLEELRALAEALAELDVLLSLATLAAEGNYVRPEFVDSG------ELEIKNGRHPVLE 306 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCCeeCCCC------CEEEeeCCCCccc
Confidence 99999999999999999999999999999999999999999999998753 6999999999984
No 22
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=100.00 E-value=9.6e-35 Score=287.40 Aligned_cols=182 Identities=35% Similarity=0.584 Sum_probs=169.3
Q ss_pred cccccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHH
Q 006974 340 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHI 419 (623)
Q Consensus 340 ~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~ 419 (623)
++++|+++..| ++++|+||||||||||||+++...++++.|+++|+.. ..++++++++..++..+.+....|+|+.++
T Consensus 19 ~~~~~~~l~~~-~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~-~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~ 96 (202)
T cd03243 19 FVPNDINLGSG-RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAES-ASIPLVDRIFTRIGAEDSISDGRSTFMAEL 96 (202)
T ss_pred eEeeeEEEcCC-eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccc-cccCCcCEEEEEecCcccccCCceeHHHHH
Confidence 67999999999 9999999999999999999988888999999999986 789999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEecC--c
Q 006974 420 SRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLE--T 497 (623)
Q Consensus 420 ~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~~~--~ 497 (623)
+++..++..+.+|+++|+|||++||||.++..+.+.+++.+.+.+.++|++||+.++...+++...+.++++..+.+ .
T Consensus 97 ~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 97 LELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCe
Confidence 99999999999999999999999999999999988788888888899999999999888888888888898887654 6
Q ss_pred cccccccccCCCCCcHHHHHHHHCCC
Q 006974 498 LRPTYRILWGSTGDSNALNIAKSIGF 523 (623)
Q Consensus 498 l~~~y~l~~g~~~~s~a~~ia~~~g~ 523 (623)
+.++|++..|.+..|+|+++|+++|+
T Consensus 177 ~~~~ykl~~g~~~~~~a~~~~~~~g~ 202 (202)
T cd03243 177 LTFTYKLIDGICDPSYALQIAELAGL 202 (202)
T ss_pred eeEEEEEeECCCCCcHHHHHHHHcCC
Confidence 89999999999999999999999985
No 23
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.98 E-value=2.6e-32 Score=269.26 Aligned_cols=181 Identities=29% Similarity=0.439 Sum_probs=157.8
Q ss_pred cccccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHH
Q 006974 340 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHI 419 (623)
Q Consensus 340 ~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~ 419 (623)
+|++|+++..| ++++|+||||||||||||+|+...++++.|.++|+.. ..++ ++.++..+...+++..+.|.|..++
T Consensus 15 ~v~n~i~l~~g-~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~-~~~q-~~~l~~~~~~~d~l~~~~s~~~~e~ 91 (199)
T cd03283 15 RVANDIDMEKK-NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASS-FELP-PVKIFTSIRVSDDLRDGISYFYAEL 91 (199)
T ss_pred eecceEEEcCC-cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCc-cCcc-cceEEEeccchhccccccChHHHHH
Confidence 67889999999 9999999999999999999988888999999999975 5666 6778888888888888888888788
Q ss_pred HHHHHHHHhcC--CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceE--EEec
Q 006974 420 SRIVDILELVS--RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAAT--EFSL 495 (623)
Q Consensus 420 ~rl~~~~~l~~--~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~--~~~~ 495 (623)
+++..++..+. +|+++|+|||++|||+.++..+..++++.+.+.+.++|++||++++....+....+.+.++ .++.
T Consensus 92 ~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~~~~~~~~~ 171 (199)
T cd03283 92 RRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNYHFREDIDD 171 (199)
T ss_pred HHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEEEEEEEEEC
Confidence 88999988888 9999999999999999999998877888888778899999999997766655555555544 3456
Q ss_pred CccccccccccCCCCCcHHHHHHHHCCC
Q 006974 496 ETLRPTYRILWGSTGDSNALNIAKSIGF 523 (623)
Q Consensus 496 ~~l~~~y~l~~g~~~~s~a~~ia~~~g~ 523 (623)
+.+.++|++.+|+++.|+|+++|++.|+
T Consensus 172 ~~~~~~y~~~~G~~~~s~~~~~a~~~g~ 199 (199)
T cd03283 172 NKLIFDYKLKPGVSPTRNALRLMKKIGI 199 (199)
T ss_pred CeeeEEEEeCCCCCCCcHHHHHHHHcCC
Confidence 7789999999999999999999999985
No 24
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.2e-30 Score=260.04 Aligned_cols=165 Identities=24% Similarity=0.324 Sum_probs=139.7
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------h---------hhceeecC
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S---------KAGLYLPA 386 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------a---------~~G~~vp~ 386 (623)
.++++|+++.|++..+ ++||++++| ++++|+||||||||||+|++ |++.+. . ....||||
T Consensus 4 ~i~v~nl~v~y~~~~vl~~i~l~v~~G-~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ 82 (254)
T COG1121 4 MIEVENLTVSYGNRPVLEDISLSVEKG-EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQ 82 (254)
T ss_pred EEEEeeeEEEECCEeeeeccEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCc
Confidence 5889999999996445 999999999 99999999999999999999 887642 1 13469999
Q ss_pred CCC--CCcc---------------------------HHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974 387 KNH--PRLP---------------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (623)
Q Consensus 387 ~~~--~~l~---------------------------~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL 436 (623)
... ..+| .++.++.++|..+..++.+++|||||+ |+.+|++++++|+|+|
T Consensus 83 ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lll 162 (254)
T COG1121 83 KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLL 162 (254)
T ss_pred ccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEE
Confidence 641 1222 145678999999999999999999999 8999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (623)
Q Consensus 437 LDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~ 493 (623)
||||++|+|+.....+.. ++..++++|+||+++|||+. +..++|++..+ |.++.+
T Consensus 163 LDEP~~gvD~~~~~~i~~-lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~ 218 (254)
T COG1121 163 LDEPFTGVDVAGQKEIYD-LLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIA 218 (254)
T ss_pred ecCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEe
Confidence 999999999999999999 78888888999999999987 77889987665 445544
No 25
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.97 E-value=4.6e-30 Score=258.89 Aligned_cols=167 Identities=21% Similarity=0.293 Sum_probs=144.1
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhhhcee
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLY 383 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~~G~~ 383 (623)
.++++||+++|+++++ ++||++++| ++++|+||||||||||||++ |++.+ +|+.-.|
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G-~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKG-EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCC-cEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 4789999999998877 999999999 99999999999999999999 77653 4566789
Q ss_pred ecCCCCCCc----------------c-----------HHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974 384 LPAKNHPRL----------------P-----------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (623)
Q Consensus 384 vp~~~~~~l----------------~-----------~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll 435 (623)
+||...... + .+++.+..+|..+..++.+.+||||++ |+.+|++++++|+++
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iL 160 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPIL 160 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEE
Confidence 999852111 1 134558889999999999999999999 688888999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEcCchhHH-hhccccceeeCceEEEe
Q 006974 436 LIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (623)
Q Consensus 436 LLDEp~~glD~~~~~~l~~all~~l~-~~~~~vii~TH~~~l~-~~~~~~~~i~~g~~~~~ 494 (623)
||||||++||+.....+.+ ++..+. ++|.|+|+++||++++ .+||+.+.+.+|++...
T Consensus 161 LLDEPTs~LDi~~Q~evl~-ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~ 220 (258)
T COG1120 161 LLDEPTSHLDIAHQIEVLE-LLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQ 220 (258)
T ss_pred EeCCCccccCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEee
Confidence 9999999999999999999 566666 6689999999999955 79999999999998765
No 26
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=9.9e-30 Score=249.16 Aligned_cols=167 Identities=21% Similarity=0.306 Sum_probs=142.3
Q ss_pred CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-----------------------hh
Q 006974 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----------------------MS 378 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-----------------------~a 378 (623)
-.+++++|+++||++.| ++||++.+| ++++|+||+|+|||||||+| |++.+ ..
T Consensus 7 ~~I~vr~v~~~fG~~~Ild~v~l~V~~G-ei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 7 PLIEVRGVTKSFGDRVILDGVDLDVPRG-EILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred ceEEEeeeeeecCCEEEecCceeeecCC-cEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 36899999999999988 999999999 99999999999999999999 77753 12
Q ss_pred hhceeecCCC--CCCccHHHHH----------------------HHHcCCchh-hhcccccccHHHH-HHHHHHHhcCCC
Q 006974 379 KAGLYLPAKN--HPRLPWFDLI----------------------LADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRE 432 (623)
Q Consensus 379 ~~G~~vp~~~--~~~l~~~d~i----------------------~~~ig~~~~-~~~~~stfS~g~~-rl~~~~~l~~~~ 432 (623)
++| +++|.+ +..+++++|+ ++.+|+... .+..+|.|||||+ |+++|++++.+|
T Consensus 86 r~G-vlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdP 164 (263)
T COG1127 86 RMG-VLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDP 164 (263)
T ss_pred hee-EEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCC
Confidence 344 566665 2344555543 456788777 8999999999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 433 SLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+|+++||||+||||.....+.. ++..|++ -+.|++++|||.+ +..+||++..+.+|++.+.
T Consensus 165 ell~~DEPtsGLDPI~a~~~~~-LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~ 227 (263)
T COG1127 165 ELLFLDEPTSGLDPISAGVIDE-LIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAE 227 (263)
T ss_pred CEEEecCCCCCCCcchHHHHHH-HHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEe
Confidence 9999999999999999999988 5555665 4889999999987 7889999999999999886
No 27
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=1.7e-29 Score=243.96 Aligned_cols=166 Identities=23% Similarity=0.313 Sum_probs=141.4
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh---------------------hhhhc
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------MSKAG 381 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~---------------------~a~~G 381 (623)
+++++||+|+||+..| ++|+++.+| ++++|+||+||||||||||+ +|-.+ ..+.|
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~G-evv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKG-EVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCC-CEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 4789999999999887 999999999 99999999999999999999 44322 11233
Q ss_pred eeecCCCC--CCccHHH----------------------HHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974 382 LYLPAKNH--PRLPWFD----------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (623)
Q Consensus 382 ~~vp~~~~--~~l~~~d----------------------~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL 436 (623)
+|+|+.+ +.++..+ .++.++|+.+..+..++.||||++ |+++|++++.+|.++|
T Consensus 81 -mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmL 159 (240)
T COG1126 81 -MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVML 159 (240)
T ss_pred -eecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEe
Confidence 6777641 2333333 357899999999999999999999 8999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHH-hhccccceeeCceEEEe
Q 006974 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (623)
Q Consensus 437 LDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~-~~~~~~~~i~~g~~~~~ 494 (623)
+|||||.|||+....+.. ++..|++.|.|.|++||.+.++ .++|+++.+..|.+...
T Consensus 160 FDEPTSALDPElv~EVL~-vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~ 217 (240)
T COG1126 160 FDEPTSALDPELVGEVLD-VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEE 217 (240)
T ss_pred ecCCcccCCHHHHHHHHH-HHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEe
Confidence 999999999999999999 7888999999999999999966 68999999999976544
No 28
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.4e-28 Score=282.26 Aligned_cols=275 Identities=18% Similarity=0.172 Sum_probs=190.4
Q ss_pred CCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--------hhceeecCCCC---
Q 006974 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNH--- 389 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--------~~G~~vp~~~~--- 389 (623)
+.+++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+.. ....|+|+...
T Consensus 310 ~~~l~~~~l~~~y~~~~il~~isl~i~~G-e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l 388 (638)
T PRK10636 310 NPLLKMEKVSAGYGDRIILDSIKLNLVPG-SRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFL 388 (638)
T ss_pred CceEEEEeeEEEeCCeeeeccceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhC
Confidence 457899999999987665 999999999 99999999999999999999 7764321 01236676421
Q ss_pred -CCccH---------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHH
Q 006974 390 -PRLPW---------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVA 451 (623)
Q Consensus 390 -~~l~~---------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~ 451 (623)
....+ +..++..+++. +..++++++|||||+ |++++++++.+|+++||||||+|||+.....
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~ 468 (638)
T PRK10636 389 RADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQA 468 (638)
T ss_pred CccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence 11111 12356677775 468899999999999 8999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEecCccccccccccCCCCCcHHHHHHHHCC--CCHHHH
Q 006974 452 LATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIG--FDRKII 528 (623)
Q Consensus 452 l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~~~~l~~~y~l~~g~~~~s~a~~ia~~~g--~~~~i~ 528 (623)
+..++.++ ++|||+||||.+ +..+|++++.+.+|.+....+.... |.-... ....+.... .+..
T Consensus 469 l~~~L~~~----~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~-~~~~~~------~~~~~~~~~~~~~~~-- 535 (638)
T PRK10636 469 LTEALIDF----EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLED-YQQWLS------DVQKQENQTDEAPKE-- 535 (638)
T ss_pred HHHHHHHc----CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHH-HHHHHh------hhhhhhhhhcccccc--
Confidence 99966554 469999999988 5679999999999998744332221 210000 000000000 0000
Q ss_pred HHHHHHHHhhcchHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhchhhH--HHHHHHHHhHHHHH
Q 006974 529 QRAQKLVERLRPERQQHRK-SELYQSLMEERRKLESQARTAASLHAEIMDLYREDSTSASISVY--RYQFAVTSTLSKVD 605 (623)
Q Consensus 529 ~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 605 (623)
..+. ....+....+. .+......+.+++++..++++++++++++++++++.++..+.++ .+..++..++.+++
T Consensus 536 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (638)
T PRK10636 536 NNAN----SAQARKDQKRREAELRTQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAK 611 (638)
T ss_pred cccc----ccccchhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHH
Confidence 0000 00000000011 11111134445567778889999999999999999888666554 38999999999999
Q ss_pred hHhhhHHhhcc
Q 006974 606 FDAIPNIDQCK 616 (623)
Q Consensus 606 ~~~~~~~~~~~ 616 (623)
++++.+|++.-
T Consensus 612 ~~l~~~~~~w~ 622 (638)
T PRK10636 612 SGLEECEMAWL 622 (638)
T ss_pred HHHHHHHHHHH
Confidence 99999998753
No 29
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.96 E-value=4.1e-28 Score=278.61 Aligned_cols=272 Identities=18% Similarity=0.166 Sum_probs=188.2
Q ss_pred CCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------h--hceeecCCCC---
Q 006974 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------K--AGLYLPAKNH--- 389 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------~--~G~~vp~~~~--- 389 (623)
+.+++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |++.+.. . ...|+|+...
T Consensus 317 ~~~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~ 395 (635)
T PRK11147 317 KIVFEMENVNYQIDGKQLVKDFSAQVQRG-DKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELD 395 (635)
T ss_pred CceEEEeeeEEEECCeEEEcCcEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccC
Confidence 457899999999988665 999999999 99999999999999999999 7654321 1 1236666421
Q ss_pred CCccHHH-------------------HHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHH
Q 006974 390 PRLPWFD-------------------LILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 448 (623)
Q Consensus 390 ~~l~~~d-------------------~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~ 448 (623)
..+++++ .++..++.. +..++++++|||||+ |++++++++.+|++|||||||+|||+..
T Consensus 396 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~ 475 (635)
T PRK11147 396 PEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVET 475 (635)
T ss_pred CCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 1122222 234456664 467889999999999 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceee-CceEEEecCccccccccccCCCCCcHHHHHHHHCCCCHH
Q 006974 449 GVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE-NAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRK 526 (623)
Q Consensus 449 ~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~-~g~~~~~~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~ 526 (623)
...|..++.++ ++|+|++|||.+ +..+|++++.+. +|.+....+.+.. |.-... . ........+..
T Consensus 476 ~~~l~~~l~~~----~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~-y~~~~~----~---~~~~~~~~~~~ 543 (635)
T PRK11147 476 LELLEELLDSY----QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHD-ARQQQA----Q---YLALKQPAVKK 543 (635)
T ss_pred HHHHHHHHHhC----CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHH-HHHHHH----H---HHhhhhhhccc
Confidence 98888854443 569999999987 567999999997 7988776554332 210000 0 00000000000
Q ss_pred HHHHHHHHHHhhcchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhchhhHH-HHHHHHHhHHHHH
Q 006974 527 IIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYREDSTSASISVYR-YQFAVTSTLSKVD 605 (623)
Q Consensus 527 i~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 605 (623)
.+ . ....+.....+..... .. +..++++..++++++++++++++++++..+..+.|+. +..++..++.+++
T Consensus 544 ---~~-~--~~~~~~~~~~~~~~~~-~~-~~~~~~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (635)
T PRK11147 544 ---KE-E--AAAPKAETVKRSSKKL-SY-KLQRELEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAE 615 (635)
T ss_pred ---cc-c--ccccccchhhhhhhhh-ch-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHH
Confidence 00 0 0000000000000000 12 2233377888899999999999999999887777766 8999999999999
Q ss_pred hHhhhHHhhcc
Q 006974 606 FDAIPNIDQCK 616 (623)
Q Consensus 606 ~~~~~~~~~~~ 616 (623)
++++.++++.-
T Consensus 616 ~~~~~~~~~w~ 626 (635)
T PRK11147 616 QELEVAFERWE 626 (635)
T ss_pred HHHHHHHHHHH
Confidence 99999998753
No 30
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=2.4e-28 Score=254.84 Aligned_cols=168 Identities=24% Similarity=0.333 Sum_probs=140.3
Q ss_pred cEEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------h-----------hhcee
Q 006974 326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S-----------KAGLY 383 (623)
Q Consensus 326 ~l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------a-----------~~G~~ 383 (623)
.++++||+|.|+ +..+ ++||++.+| ++++|+||||||||||||++ |++.+. . +.-.|
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~G-ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy 82 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPG-EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGY 82 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCC-eEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEE
Confidence 467899999999 5665 999999999 99999999999999999999 776531 0 12347
Q ss_pred ecCCCC--CCcc---------------------HHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeC
Q 006974 384 LPAKNH--PRLP---------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (623)
Q Consensus 384 vp~~~~--~~l~---------------------~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDE 439 (623)
+|+... ..++ .++.++..+|+.+..++.+++||+||| |+.+|.+++.+|+++||||
T Consensus 83 ~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDE 162 (293)
T COG1131 83 VPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDE 162 (293)
T ss_pred EccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 887652 1111 244677888888766788999999999 8999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEcCchh-HHhhccccceeeCceEEEec
Q 006974 440 IGSGTDPSEGVALATSILQYLRDRV-GLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (623)
Q Consensus 440 p~~glD~~~~~~l~~all~~l~~~~-~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~~ 495 (623)
||+||||..+..+.+ ++..+++.+ .|||++||.++ +..+||++..+.+|++.++.
T Consensus 163 Pt~GLDp~~~~~~~~-~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g 219 (293)
T COG1131 163 PTSGLDPESRREIWE-LLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEG 219 (293)
T ss_pred CCcCCCHHHHHHHHH-HHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeC
Confidence 999999999999999 666677766 79999999987 67789999999999998874
No 31
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=7.3e-28 Score=238.92 Aligned_cols=162 Identities=24% Similarity=0.339 Sum_probs=140.2
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-------h-------hceeecCCC
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-------K-------AGLYLPAKN 388 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-------~-------~G~~vp~~~ 388 (623)
.+.+++|++.|++..+ ++||++.+| ++++|+||+|||||||||+| |+..+-+ + .-.|++|+.
T Consensus 3 ~l~i~~v~~~f~~~~vl~~i~L~v~~G-EfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~ 81 (248)
T COG1116 3 LLEIEGVSKSFGGVEVLEDINLSVEKG-EFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQED 81 (248)
T ss_pred eEEEEeeEEEeCceEEeccceeEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccC
Confidence 4788999999998666 999999999 99999999999999999999 7765421 1 114777775
Q ss_pred CCCccH------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCC
Q 006974 389 HPRLPW------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 443 (623)
Q Consensus 389 ~~~l~~------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~g 443 (623)
..+|| .+.+++.+|+.+..++.++.|||||+ |+++|++++.+|+++|||||++.
T Consensus 82 -~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgA 160 (248)
T COG1116 82 -ALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGA 160 (248)
T ss_pred -cccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcch
Confidence 56665 33567889999999999999999999 89999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHH-hhccccceeeCc
Q 006974 444 TDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENA 489 (623)
Q Consensus 444 lD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~-~~~~~~~~i~~g 489 (623)
||...+..+.+.+++-..+.+.|++++|||.+.+ .++|+++++.++
T Consensus 161 LDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 161 LDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred hhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 9999999999988888888889999999998754 689999998884
No 32
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.6e-28 Score=232.79 Aligned_cols=166 Identities=19% Similarity=0.273 Sum_probs=135.6
Q ss_pred cEEEceeeeecCCcc--c-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhce
Q 006974 326 EMTVGSLSKGISDFP--V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 382 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~--v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~ 382 (623)
++++.+++|+|++.+ + +++|++..| ++++|.||||+||||+||+| +++.+- .+.|.
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~G-ei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGV 79 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEG-EITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGV 79 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccc-eEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcce
Confidence 467899999999854 2 999999999 99999999999999999999 444331 12232
Q ss_pred eecCC-C-CCCcc------H---------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEe
Q 006974 383 YLPAK-N-HPRLP------W---------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (623)
Q Consensus 383 ~vp~~-~-~~~l~------~---------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLD 438 (623)
++.. + +.+++ + .+++..++++.+.+++.+..||.||| ++.+|++++.+|++++||
T Consensus 80 -l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlD 158 (245)
T COG4555 80 -LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLD 158 (245)
T ss_pred -ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEc
Confidence 1211 0 01111 1 12345677888899999999999999 799999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 439 Ep~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|||+|||......+.+ ++..+++.|.+|||+||.++ +..+||+++.+.+|.+++.
T Consensus 159 EP~sGLDi~~~r~~~d-fi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~ 214 (245)
T COG4555 159 EPTSGLDIRTRRKFHD-FIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLE 214 (245)
T ss_pred CCCCCccHHHHHHHHH-HHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEc
Confidence 9999999999999999 77788888999999999986 7789999999999998875
No 33
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.95 E-value=1.2e-27 Score=251.44 Aligned_cols=167 Identities=21% Similarity=0.266 Sum_probs=138.8
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhhceee
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYL 384 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~G~~v 384 (623)
.++++||+|.|++..+ ++||++.+| ++++|+||||||||||+|++ |++.+. .+...|+
T Consensus 7 ~i~i~~l~k~~~~~~~l~~vsl~i~~G-ei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v 85 (306)
T PRK13537 7 PIDFRNVEKRYGDKLVVDGLSFHVQRG-ECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVV 85 (306)
T ss_pred eEEEEeEEEEECCeEEEecceEEEeCC-cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEE
Confidence 6899999999987655 999999999 99999999999999999999 776431 1223477
Q ss_pred cCCCC--CCccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCC
Q 006974 385 PAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 440 (623)
Q Consensus 385 p~~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp 440 (623)
|+... ..+++. +.++..+++.+..++.+++||+||+ |+.+|++++.+|+++|||||
T Consensus 86 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEP 165 (306)
T PRK13537 86 PQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEP 165 (306)
T ss_pred eccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 87642 112222 2345567777778899999999999 89999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 441 ~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|+||||..+..+.. ++..+++.|.|+|++||+++ +..+||++..+.+|++.+.
T Consensus 166 t~gLD~~~~~~l~~-~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~ 219 (306)
T PRK13537 166 TTGLDPQARHLMWE-RLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAE 219 (306)
T ss_pred CcCCCHHHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999 55556777899999999988 5689999999999998776
No 34
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.95 E-value=1.2e-27 Score=254.56 Aligned_cols=170 Identities=20% Similarity=0.241 Sum_probs=140.0
Q ss_pred CCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhhce
Q 006974 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGL 382 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~G~ 382 (623)
..+++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+. .+...
T Consensus 39 ~~~i~i~nl~k~y~~~~~l~~is~~i~~G-ei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 117 (340)
T PRK13536 39 TVAIDLAGVSKSYGDKAVVNGLSFTVASG-ECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIG 117 (340)
T ss_pred ceeEEEEEEEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEE
Confidence 346999999999998655 999999999 99999999999999999999 776431 11234
Q ss_pred eecCCCCC--CccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEe
Q 006974 383 YLPAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (623)
Q Consensus 383 ~vp~~~~~--~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLD 438 (623)
|+|+.... .+++. +.++..+|+.+..++.+++||+||+ |+.+|++++.+|+++|||
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLD 197 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILD 197 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 77776421 12221 2345667777778899999999999 899999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEec
Q 006974 439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (623)
Q Consensus 439 Ep~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~~ 495 (623)
|||+||||..+..+... +..+.+.|.|+|++||+++ +..+|+++..+.+|++.++.
T Consensus 198 EPt~gLD~~~r~~l~~~-l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g 254 (340)
T PRK13536 198 EPTTGLDPHARHLIWER-LRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEG 254 (340)
T ss_pred CCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 99999999999999994 5556667899999999988 56899999999999988753
No 35
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=3.4e-27 Score=233.70 Aligned_cols=164 Identities=19% Similarity=0.260 Sum_probs=132.7
Q ss_pred EEEceeeeecCCc----cc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhh-hh-----------------------
Q 006974 327 MTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLA-SL----------------------- 376 (623)
Q Consensus 327 l~~~~l~~~y~~~----~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~-~~----------------------- 376 (623)
++++||+|.|+.. .+ ++||++.+| ++++|+||+||||||||+++|.+ .+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~G-e~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAG-EFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 5688999999642 23 999999999 99999999999999999999543 32
Q ss_pred hhhhceeecCCCC--CCccHH---------------------HHHHHHcCCchhhh-cccccccHHHH-HHHHHHHhcCC
Q 006974 377 MSKAGLYLPAKNH--PRLPWF---------------------DLILADIGDHQSLE-QNLSTFSGHIS-RIVDILELVSR 431 (623)
Q Consensus 377 ~a~~G~~vp~~~~--~~l~~~---------------------d~i~~~ig~~~~~~-~~~stfS~g~~-rl~~~~~l~~~ 431 (623)
..+...|++|... ..++.. ..++..+|+.+... ++++.|||||+ |+++|++++.+
T Consensus 81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~ 160 (226)
T COG1136 81 RRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINN 160 (226)
T ss_pred HHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcC
Confidence 1222347777642 122222 23456678887777 88999999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceE
Q 006974 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAAT 491 (623)
Q Consensus 432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~ 491 (623)
|+++|.||||.+||+..+..+...+.+.-.+.|.|+|+||||.+++.+||+.+.+.+|++
T Consensus 161 P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 161 PKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKI 220 (226)
T ss_pred CCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCee
Confidence 999999999999999999999995554444558899999999999999999999999983
No 36
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.7e-27 Score=235.79 Aligned_cols=165 Identities=20% Similarity=0.184 Sum_probs=132.8
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeecC
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPA 386 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp~ 386 (623)
++++|+++.|++..+ ++||++.+| ++++|+||||||||||+|++ |++.+. .+...|+|+
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 79 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPG-EFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ 79 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence 357899999987655 999999999 99999999999999999999 776431 012346777
Q ss_pred CCCC--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCC
Q 006974 387 KNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (623)
Q Consensus 387 ~~~~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~ 442 (623)
.... .+++ +..++..+|+.+..++.+++||+||+ |+.++++++.+|+++||||||+
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~ 159 (213)
T cd03259 80 DYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLS 159 (213)
T ss_pred chhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 5311 1111 12345667777778899999999999 7999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974 443 GTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (623)
Q Consensus 443 glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~ 493 (623)
|||+.....+...+. .+.+ .+.++|++||+.+ +..+|+++..+.+|++..
T Consensus 160 ~LD~~~~~~l~~~l~-~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 211 (213)
T cd03259 160 ALDAKLREELREELK-ELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQ 211 (213)
T ss_pred cCCHHHHHHHHHHHH-HHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 999999999999554 4554 5889999999987 578999999999998753
No 37
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=5.8e-27 Score=229.17 Aligned_cols=168 Identities=23% Similarity=0.312 Sum_probs=140.0
Q ss_pred cEEEceeeeec-CCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-----------------------hh
Q 006974 326 EMTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----------------------MS 378 (623)
Q Consensus 326 ~l~~~~l~~~y-~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-----------------------~a 378 (623)
+++++||++.| +++.. +++|+|++| ++++|+||+|||||||||++ |++.+ ..
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~G-E~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQG-EMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCC-cEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 68999999999 66555 999999999 99999999999999999999 66532 34
Q ss_pred hhceeecCCCC--CCccHHH-----------------------------HHHHHcCCchhhhcccccccHHHH-HHHHHH
Q 006974 379 KAGLYLPAKNH--PRLPWFD-----------------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDIL 426 (623)
Q Consensus 379 ~~G~~vp~~~~--~~l~~~d-----------------------------~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~ 426 (623)
++| +++|..+ .++.++. ..++++|+.+...+..++||||++ |+++|+
T Consensus 82 ~iG-mIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIAR 160 (258)
T COG3638 82 DIG-MIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIAR 160 (258)
T ss_pred hce-eEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHH
Confidence 556 4555542 1111111 247889999999999999999998 899999
Q ss_pred HhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHH-hhccccceeeCceEEEec
Q 006974 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFSL 495 (623)
Q Consensus 427 ~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~-~~~~~~~~i~~g~~~~~~ 495 (623)
+++.+|+++|.|||++.|||.....++..+.+.-.+.|.|+|++-|+.+++ .+|++++.+.+|+++||.
T Consensus 161 aL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 161 ALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred HHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 999999999999999999999999999955444445689999999999965 799999999999999984
No 38
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=2e-27 Score=232.60 Aligned_cols=166 Identities=21% Similarity=0.340 Sum_probs=141.6
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------hhhceeecC
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------SKAGLYLPA 386 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------a~~G~~vp~ 386 (623)
.+++++|+|+||++.+ ++||++++| ++++++||||+||||++|+| |++.+- .++| |+|-
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G-~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIG-yLPE 79 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPG-EIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIG-YLPE 79 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCC-eEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcc-cChh
Confidence 3689999999999776 999999999 99999999999999999999 777541 1333 6776
Q ss_pred CCC--CCccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCC
Q 006974 387 KNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (623)
Q Consensus 387 ~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~ 442 (623)
+.. ..+.+. +.++.+++......+++.+||-|++ ++.++.+++++|.|||||||++
T Consensus 80 ERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFS 159 (300)
T COG4152 80 ERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFS 159 (300)
T ss_pred hhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCcc
Confidence 541 233332 3457788888888899999999998 7999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 443 GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 443 glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
||||.....|-.++.+ +++.|+|||++||.++ +..+||+...+..|..+++
T Consensus 160 GLDPVN~elLk~~I~~-lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~ 211 (300)
T COG4152 160 GLDPVNVELLKDAIFE-LKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLY 211 (300)
T ss_pred CCChhhHHHHHHHHHH-HHhcCCEEEEecchHHHHHHHhhhhheecCCceEEe
Confidence 9999999999996665 7888999999999998 8899999999999988876
No 39
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.95 E-value=5.1e-27 Score=246.42 Aligned_cols=168 Identities=20% Similarity=0.234 Sum_probs=137.4
Q ss_pred CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhhcee
Q 006974 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLY 383 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~G~~ 383 (623)
.+++++||++.|++..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+...|
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~ 81 (303)
T TIGR01288 3 VAIDLVGVSKSYGDKVVVNDLSFTIARG-ECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV 81 (303)
T ss_pred cEEEEEeEEEEeCCeEEEcceeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEE
Confidence 35889999999987655 999999999 99999999999999999999 776421 122347
Q ss_pred ecCCCCC--CccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeC
Q 006974 384 LPAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (623)
Q Consensus 384 vp~~~~~--~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDE 439 (623)
+|+.... .+++. +.++..+|+.+..++.+++|||||+ |+.+|++++.+|+++||||
T Consensus 82 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 161 (303)
T TIGR01288 82 VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDE 161 (303)
T ss_pred EeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 7776421 12222 2345566777778899999999999 8999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 440 p~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
||+|||+.....+... +..+.+.|.|+|++||+++ +..+|++++.+.+|++...
T Consensus 162 Pt~gLD~~~~~~l~~~-l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~ 216 (303)
T TIGR01288 162 PTTGLDPHARHLIWER-LRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAE 216 (303)
T ss_pred CCcCCCHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999994 5556666889999999988 5679999999999998765
No 40
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.94 E-value=4e-27 Score=233.25 Aligned_cols=161 Identities=22% Similarity=0.241 Sum_probs=130.7
Q ss_pred EceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------hhhceeecCCC
Q 006974 329 VGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------SKAGLYLPAKN 388 (623)
Q Consensus 329 ~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------a~~G~~vp~~~ 388 (623)
++||++.|++ ..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+...|+|+..
T Consensus 2 ~~~l~~~~~~~~~~l~~v~~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 2 IENISFSYKKGTEILDDLSLDLYAG-EIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred cccEEEEeCCcCceeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 5789999976 555 999999999 99999999999999999999 765421 11234677763
Q ss_pred C---CCccH-----------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHH
Q 006974 389 H---PRLPW-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (623)
Q Consensus 389 ~---~~l~~-----------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~ 447 (623)
. ...++ +..++..+|+.+..++.+++||+||+ |++++++++.+|+++||||||+|||+.
T Consensus 81 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 160 (205)
T cd03226 81 DYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYK 160 (205)
T ss_pred hhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHH
Confidence 1 11122 23456777888888899999999999 799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceE
Q 006974 448 EGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAAT 491 (623)
Q Consensus 448 ~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~ 491 (623)
....+.. ++..+.+.+.++|++||+.+ +..+|+++..+.+|++
T Consensus 161 ~~~~l~~-~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 161 NMERVGE-LIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred HHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999998 55556566889999999987 5578999999998875
No 41
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=6.6e-27 Score=234.22 Aligned_cols=166 Identities=23% Similarity=0.293 Sum_probs=134.3
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhhceeec
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP 385 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~G~~vp 385 (623)
++++|++++|++..+ +++|++.+| ++++|+||||||||||||+| |++.+. .+...|+|
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRG-EIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence 368899999987666 999999999 99999999999999999999 765431 01234677
Q ss_pred CCCCC--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974 386 AKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (623)
Q Consensus 386 ~~~~~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~ 441 (623)
+.... .+++ ++.++..+|+.+..++.+++||+||+ |++++++++.+|+++||||||
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt 159 (220)
T cd03265 80 QDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPT 159 (220)
T ss_pred CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 76421 1111 22345677888788899999999999 799999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 442 SGTDPSEGVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 442 ~glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+|||+.....+...+. .+.++ +.++|++||+.+ +..+|++++.+.+|++...
T Consensus 160 ~~LD~~~~~~l~~~l~-~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~ 213 (220)
T cd03265 160 IGLDPQTRAHVWEYIE-KLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAE 213 (220)
T ss_pred cCCCHHHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 9999999999999554 45544 789999999987 5678999999999998654
No 42
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.94 E-value=5e-27 Score=234.35 Aligned_cols=162 Identities=15% Similarity=0.225 Sum_probs=130.4
Q ss_pred EEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------hh
Q 006974 327 MTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------SK 379 (623)
Q Consensus 327 l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------------a~ 379 (623)
++++|+++.|++ ..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKG-EMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 678999999964 334 999999999 99999999999999999999 765421 11
Q ss_pred hceeecCCCCC--CccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974 380 AGLYLPAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (623)
Q Consensus 380 ~G~~vp~~~~~--~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll 435 (623)
...|+|+.... .+++. ..++..+|+.+..++.+++|||||+ |++++++++.+|+++
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLL 160 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 23577776421 11221 2345667787788899999999999 899999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCce
Q 006974 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAA 490 (623)
Q Consensus 436 LLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~ 490 (623)
||||||+|||+.....+... +..+.+.+.|+|++||+.+ +..+|++++.+.+|+
T Consensus 161 llDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~ 215 (216)
T TIGR00960 161 LADEPTGNLDPELSRDIMRL-FEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGR 215 (216)
T ss_pred EEeCCCCcCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999999999999999994 5556666889999999987 557899998888875
No 43
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.94 E-value=9.7e-27 Score=238.60 Aligned_cols=169 Identities=17% Similarity=0.209 Sum_probs=137.9
Q ss_pred CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------hhhceeecCC
Q 006974 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------SKAGLYLPAK 387 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------a~~G~~vp~~ 387 (623)
.+++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...|+|+.
T Consensus 11 ~~l~i~~l~~~~~~~~il~~isl~i~~G-e~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~ 89 (257)
T PRK11247 11 TPLLLNAVSKRYGERTVLNQLDLHIPAG-QFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQD 89 (257)
T ss_pred CcEEEEEEEEEECCcceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecC
Confidence 56899999999987655 999999999 99999999999999999999 766431 1123467776
Q ss_pred CCC--CccH---------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHH
Q 006974 388 NHP--RLPW---------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 449 (623)
Q Consensus 388 ~~~--~l~~---------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~ 449 (623)
... ..++ +..++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+|||+...
T Consensus 90 ~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~ 169 (257)
T PRK11247 90 ARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTR 169 (257)
T ss_pred ccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 411 1112 23456677888888999999999999 79999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 450 VALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 450 ~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
..+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus 170 ~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~ 215 (257)
T PRK11247 170 IEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLD 215 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 99999555443455889999999987 5689999999999998764
No 44
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=8.9e-27 Score=233.29 Aligned_cols=166 Identities=21% Similarity=0.251 Sum_probs=132.4
Q ss_pred EEEceeeeecCC----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------hhhceeec
Q 006974 327 MTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------SKAGLYLP 385 (623)
Q Consensus 327 l~~~~l~~~y~~----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------a~~G~~vp 385 (623)
++++|+++.|++ ..+ ++||++.+| ++++|+||||||||||||++ |+..+. .+...|+|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G-~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~ 79 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEG-EFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVF 79 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEe
Confidence 357899999986 445 999999999 99999999999999999999 765431 11234677
Q ss_pred CCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974 386 AKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (623)
Q Consensus 386 ~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~ 441 (623)
+... ..+++ ++.++..+|+.+..++.+++||+||+ |++++++++.+|+++||||||
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt 159 (220)
T cd03293 80 QQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPF 159 (220)
T ss_pred cccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 6531 11111 12345667777778889999999999 899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceee--CceEEE
Q 006974 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE--NAATEF 493 (623)
Q Consensus 442 ~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~--~g~~~~ 493 (623)
+|||+.....+...+.+...+.+.|+|++||+.+ +..+|+++..+. +|++..
T Consensus 160 ~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~ 214 (220)
T cd03293 160 SALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214 (220)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEE
Confidence 9999999999999555433445789999999987 678999999998 688754
No 45
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.94 E-value=9.9e-27 Score=225.98 Aligned_cols=154 Identities=25% Similarity=0.347 Sum_probs=128.9
Q ss_pred EceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCC-----------------
Q 006974 329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH----------------- 389 (623)
Q Consensus 329 ~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~----------------- 389 (623)
++||++.|++..+ ++||++.+| ++++|+||||||||||++++ +|...|.+|.
T Consensus 2 ~~~l~~~~~~~~~l~~~~~~i~~G-~~~~l~G~nGsGKStLl~~i--------~G~~~~~~G~v~~~g~~~~~~~~~~~~ 72 (180)
T cd03214 2 VENLSVGYGGRTVLDDLSLSIEAG-EIVGILGPNGAGKSTLLKTL--------AGLLKPSSGEILLDGKDLASLSPKELA 72 (180)
T ss_pred eeEEEEEECCeeeEeeeEEEECCC-CEEEEECCCCCCHHHHHHHH--------hCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 6789999987555 999999999 99999999999999999999 4433333321
Q ss_pred CCccHHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEE
Q 006974 390 PRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLA 467 (623)
Q Consensus 390 ~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~-~~~v 467 (623)
..+.++.+++..+|+.+.+++.+.+||+|++ |++++++++.+|+++||||||+|+|+.....+... +..++++ +.|+
T Consensus 73 ~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~-l~~~~~~~~~ti 151 (180)
T cd03214 73 RKIAYVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL-LRRLARERGKTV 151 (180)
T ss_pred HHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH-HHHHHHhcCCEE
Confidence 1234444577888998888999999999999 79999999999999999999999999999999994 4555554 7899
Q ss_pred EEEcCchhH-HhhccccceeeCceEE
Q 006974 468 VVTTHYADL-SCLKDKDTRFENAATE 492 (623)
Q Consensus 468 ii~TH~~~l-~~~~~~~~~i~~g~~~ 492 (623)
|++||+.+. ..+|++++.+.+|++.
T Consensus 152 ii~sh~~~~~~~~~d~~~~l~~g~i~ 177 (180)
T cd03214 152 VMVLHDLNLAARYADRVILLKDGRIV 177 (180)
T ss_pred EEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999884 5899999999999875
No 46
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.94 E-value=1e-26 Score=231.50 Aligned_cols=165 Identities=16% Similarity=0.203 Sum_probs=132.8
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-----------------hhceeecC
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-----------------KAGLYLPA 386 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-----------------~~G~~vp~ 386 (623)
++++|+++.|++..+ ++||++.+| ++++|+||||||||||||++ |++.+.+ +...|+|+
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q 79 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADG-EFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEec
Confidence 357899999987655 999999999 99999999999999999999 7764310 11346666
Q ss_pred CCCC--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCC
Q 006974 387 KNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (623)
Q Consensus 387 ~~~~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~ 442 (623)
.... ..++ ++.++..+|+.+..++.+++||+||+ |++++++++.+|+++||||||+
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~ 159 (213)
T cd03301 80 NYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLS 159 (213)
T ss_pred ChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 5311 1111 12346677888788999999999999 7999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974 443 GTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (623)
Q Consensus 443 glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~ 493 (623)
|||+.....+...+. .+.+ .+.|+|++||+.+ +..+|+++..+.+|++..
T Consensus 160 ~LD~~~~~~l~~~l~-~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~ 211 (213)
T cd03301 160 NLDAKLRVQMRAELK-RLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQ 211 (213)
T ss_pred cCCHHHHHHHHHHHH-HHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence 999999999999544 4554 5889999999987 567899999999998754
No 47
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.94 E-value=6.8e-27 Score=233.63 Aligned_cols=162 Identities=22% Similarity=0.293 Sum_probs=129.7
Q ss_pred EEEceeeeecCC----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------
Q 006974 327 MTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------- 377 (623)
Q Consensus 327 l~~~~l~~~y~~----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------- 377 (623)
++++||++.|++ ..+ ++||++.+| ++++|+||||||||||||++ |++.+.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G-~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKG-EFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAF 79 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCC-CEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHH
Confidence 357899999976 445 999999999 99999999999999999999 775421
Q ss_pred -hhhceeecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCC
Q 006974 378 -SKAGLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (623)
Q Consensus 378 -a~~G~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~ 432 (623)
.+...|+|+... ..+++ ++.++..+|+.+..++.+++||+||+ |++++++++.+|
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 159 (218)
T cd03255 80 RRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDP 159 (218)
T ss_pred HhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCC
Confidence 112346666531 11111 23456677887778899999999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhHHhhccccceeeCce
Q 006974 433 SLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAA 490 (623)
Q Consensus 433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l~~~~~~~~~i~~g~ 490 (623)
+++||||||+|||+.....+...+ ..+.+ .+.|+|++||+.+...+|++++.+.+|+
T Consensus 160 ~lllLDEP~~~LD~~~~~~l~~~l-~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~ 217 (218)
T cd03255 160 KIILADEPTGNLDSETGKEVMELL-RELNKEAGTTIVVVTHDPELAEYADRIIELRDGK 217 (218)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHH-HHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCc
Confidence 999999999999999999999954 45555 5889999999988555899998888875
No 48
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1e-26 Score=235.25 Aligned_cols=166 Identities=20% Similarity=0.244 Sum_probs=133.6
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------hhhc
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------SKAG 381 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------------a~~G 381 (623)
++++||++.|++..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+..
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRG-EILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 357899999987655 999999999 99999999999999999999 665421 1123
Q ss_pred eeecCCCC--CCccHH----------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974 382 LYLPAKNH--PRLPWF----------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (623)
Q Consensus 382 ~~vp~~~~--~~l~~~----------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL 436 (623)
.|+|+... ..+++. ..++..+|+.+..++.+++|||||+ |++++++++.+|+++|
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lll 159 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLL 159 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 46777641 111221 2345666777777889999999999 7999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 437 IDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 437 LDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|||||+|||+.....+... +..+.+ .+.|+|++||+.+ +..+||+++.+.+|++...
T Consensus 160 lDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~ 218 (235)
T cd03261 160 YDEPTAGLDPIASGVIDDL-IRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAE 218 (235)
T ss_pred ecCCcccCCHHHHHHHHHH-HHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEe
Confidence 9999999999999999994 445555 4889999999987 5678999999999998654
No 49
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.94 E-value=1e-26 Score=230.79 Aligned_cols=165 Identities=23% Similarity=0.270 Sum_probs=133.7
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeecC
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPA 386 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp~ 386 (623)
++++|+++.|++..+ ++||++.+| ++++|+||||||||||||++ |+..+. .+...|+|+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G-~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKG-EIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence 367899999977655 999999999 99999999999999999999 665421 112347777
Q ss_pred CCCC--CccH-----------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCH
Q 006974 387 KNHP--RLPW-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP 446 (623)
Q Consensus 387 ~~~~--~l~~-----------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~ 446 (623)
.... ..++ ++.++..+|+.+..++.+++||+||+ |++++++++.+|+++||||||+|||+
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~ 159 (208)
T cd03268 80 APGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDP 159 (208)
T ss_pred CCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCH
Confidence 6421 1122 23345677888888899999999999 79999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974 447 SEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (623)
Q Consensus 447 ~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~ 493 (623)
.....+.. ++..+.+.+.++|++||+.+ +..+|+++..+.+|++..
T Consensus 160 ~~~~~l~~-~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~ 206 (208)
T cd03268 160 DGIKELRE-LILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE 206 (208)
T ss_pred HHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 99999998 55556656889999999988 557899999999998753
No 50
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1e-26 Score=231.16 Aligned_cols=165 Identities=19% Similarity=0.270 Sum_probs=132.6
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------hhhceeecCCC
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------SKAGLYLPAKN 388 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------a~~G~~vp~~~ 388 (623)
++++|+++.|++..+ ++||++.+| ++++|+|||||||||||+++ |+..+. .....|+|+..
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G-~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~ 79 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKG-EIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER 79 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence 367899999987655 999999999 99999999999999999999 765431 11234677664
Q ss_pred CC--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCC
Q 006974 389 HP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (623)
Q Consensus 389 ~~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~gl 444 (623)
.. .+++ +.+++..+|+....++.+.+||+||+ |++++++++.+|+++||||||+|+
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~L 159 (210)
T cd03269 80 GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGL 159 (210)
T ss_pred cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 21 1122 12345666777778889999999999 799999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974 445 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (623)
Q Consensus 445 D~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~ 493 (623)
|+.....+... +..+.+++.|+|++||+.+ +..+|++++.+.+|++..
T Consensus 160 D~~~~~~~~~~-l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 160 DPVNVELLKDV-IRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred CHHHHHHHHHH-HHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence 99999999994 5556666889999999987 557899999999998753
No 51
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.94 E-value=1.2e-26 Score=231.72 Aligned_cols=165 Identities=22% Similarity=0.312 Sum_probs=134.2
Q ss_pred EEEceeeeecCCc----cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhhc
Q 006974 327 MTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAG 381 (623)
Q Consensus 327 l~~~~l~~~y~~~----~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~G 381 (623)
++++||++.|++. .+ +++|++.+| ++++|+||||||||||||+| |+..+. .+..
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPG-EVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence 6789999999865 45 999999999 99999999999999999999 765431 1123
Q ss_pred eeecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974 382 LYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (623)
Q Consensus 382 ~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLL 437 (623)
.|+|+... ..+++ +++++..+|+.+.+++.+.+||+||+ |++++++++.+|+++||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illl 160 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLL 160 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 46777641 11111 12356677888888999999999999 89999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (623)
Q Consensus 438 DEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~ 493 (623)
||||+|||+.....+... +..+.+++.|+|++||+.+ +..+|+++..+.+|++..
T Consensus 161 DEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~ 216 (218)
T cd03266 161 DEPTTGLDVMATRALREF-IRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216 (218)
T ss_pred cCCCcCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence 999999999999999994 4555666889999999987 567899999999998754
No 52
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.94 E-value=8e-27 Score=229.82 Aligned_cols=167 Identities=22% Similarity=0.271 Sum_probs=135.7
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------h-hhhce
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------M-SKAGL 382 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~-a~~G~ 382 (623)
+++++||+|.|++..+ ++||+++.| ++++++||+||||||+||+| .|+.+ + .++|
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~g-ef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG- 78 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEG-EFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG- 78 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCC-eEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh-
Confidence 3689999999998766 999999999 99999999999999999999 55532 1 1222
Q ss_pred eecCCC--CCCccH---------------------HHHHHHHcCCc--hhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974 383 YLPAKN--HPRLPW---------------------FDLILADIGDH--QSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (623)
Q Consensus 383 ~vp~~~--~~~l~~---------------------~d~i~~~ig~~--~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL 436 (623)
||-|.- ++.+++ .+.++..+|++ +..++.++.||||++ |+-.+++++.+|+++|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilL 158 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILL 158 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEe
Confidence 333321 111221 34567778875 578999999999999 8999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH-HhhccccceeeCceEEEe
Q 006974 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (623)
Q Consensus 437 LDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l-~~~~~~~~~i~~g~~~~~ 494 (623)
||||++.+||..+..|-.-+.+--++-+.|+||+|||++. ..++|++.++..|+++-.
T Consensus 159 MDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~ 217 (309)
T COG1125 159 MDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQY 217 (309)
T ss_pred ecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEe
Confidence 9999999999999999997666555668999999999985 479999999999987643
No 53
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.94 E-value=1.4e-26 Score=233.49 Aligned_cols=166 Identities=22% Similarity=0.287 Sum_probs=134.2
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------h-hhcee
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------S-KAGLY 383 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a-~~G~~ 383 (623)
++++||++.|++..+ ++||++.+| ++++|+||||||||||||++ |+..+- . +...|
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQG-EIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 367899999987655 999999999 99999999999999999999 765421 0 11346
Q ss_pred ecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeC
Q 006974 384 LPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (623)
Q Consensus 384 vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDE 439 (623)
+|+... ..+++ ++.++..+|+.+..++.+++||+||+ |++++++++.+|+++||||
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 159 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDE 159 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 676541 11111 12345566777778899999999999 7999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 440 p~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
||+|||+.....+.. ++..+.+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 160 Pt~~LD~~~~~~~~~-~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 214 (232)
T cd03218 160 PFAGVDPIAVQDIQK-IIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAE 214 (232)
T ss_pred CcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEE
Confidence 999999999999999 55566666889999999986 7789999999999988644
No 54
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.94 E-value=1.1e-26 Score=230.93 Aligned_cols=159 Identities=23% Similarity=0.263 Sum_probs=127.6
Q ss_pred EceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhceee
Q 006974 329 VGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLYL 384 (623)
Q Consensus 329 ~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~~v 384 (623)
++|+++.|++ ..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+...|+
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G-~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKG-EFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCC-cEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 5789999976 555 999999999 99999999999999999999 665421 1123477
Q ss_pred cCCCC---CCccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeC
Q 006974 385 PAKNH---PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (623)
Q Consensus 385 p~~~~---~~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDE 439 (623)
|+... ...++. ..++..+|+.+.+++.++.||+||+ |++++++++.+|+++||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 160 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDE 160 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 77631 111221 2345667777778899999999999 8999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCc
Q 006974 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENA 489 (623)
Q Consensus 440 p~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g 489 (623)
||+|||+.....+...+ ..+.+++.++|++||+.+ +..+|++++.+.+|
T Consensus 161 Pt~~LD~~~~~~~~~~l-~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G 210 (211)
T cd03225 161 PTAGLDPAGRRELLELL-KKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210 (211)
T ss_pred CcccCCHHHHHHHHHHH-HHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999954 455555889999999987 55789999888776
No 55
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.94 E-value=1.4e-26 Score=230.75 Aligned_cols=161 Identities=17% Similarity=0.214 Sum_probs=128.9
Q ss_pred EEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------hhh
Q 006974 327 MTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------SKA 380 (623)
Q Consensus 327 l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------------a~~ 380 (623)
++++|+++.|+ +..+ ++||++.+| ++++|+||||||||||+|++ |+..+. .+.
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G-~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKG-EFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 67899999994 4444 999999999 99999999999999999999 765320 112
Q ss_pred ceeecCCCCC--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974 381 GLYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (623)
Q Consensus 381 G~~vp~~~~~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL 436 (623)
..|+|+.... ..++ +..++..+|+.+..++.+++||+||+ |++++++++.+|+++|
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 160 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLL 160 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence 3467765311 1111 12345667777778889999999999 8999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCc
Q 006974 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENA 489 (623)
Q Consensus 437 LDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g 489 (623)
|||||+|+|+.....+...+. .+.+++.|+|++||+.+ +..+||++..+.+|
T Consensus 161 LDEPt~~LD~~~~~~l~~~l~-~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 161 ADEPTGNLDPDLSERILDLLK-RLNKRGTTVIVATHDLSLVDRVAHRVIILDDG 213 (214)
T ss_pred EeCCcccCCHHHHHHHHHHHH-HHHHcCCEEEEEeCCHHHHHHhcCEEEEecCC
Confidence 999999999999999999544 45666889999999987 56789998888776
No 56
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.3e-26 Score=232.17 Aligned_cols=166 Identities=17% Similarity=0.170 Sum_probs=134.2
Q ss_pred EEEceeeeecCCc----cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------
Q 006974 327 MTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------- 377 (623)
Q Consensus 327 l~~~~l~~~y~~~----~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------- 377 (623)
++++|+++.|++. .+ ++||++.+| ++++|+||||||||||||++ |+..+.
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKG-EIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 6789999999865 44 999999999 99999999999999999999 665421
Q ss_pred hhhceeecCCCCC--CccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCc
Q 006974 378 SKAGLYLPAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES 433 (623)
Q Consensus 378 a~~G~~vp~~~~~--~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~ 433 (623)
.+...|+|+.... .+++. ..++..+|+.+..++.+++||+||+ |++++++++.+|+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 160 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 1223577776421 12222 2345667777778899999999999 8999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 434 LVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 434 LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
++||||||+|||+.....+...+. .+.+ .+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 161 lllLDEP~~~LD~~~~~~l~~~l~-~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 222 (233)
T cd03258 161 VLLCDEATSALDPETTQSILALLR-DINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEE 222 (233)
T ss_pred EEEecCCCCcCCHHHHHHHHHHHH-HHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999554 4554 4889999999988 5678999999999998754
No 57
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.1e-26 Score=229.04 Aligned_cols=166 Identities=18% Similarity=0.254 Sum_probs=132.8
Q ss_pred EEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-----------------hhceeecCCC
Q 006974 327 MTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-----------------KAGLYLPAKN 388 (623)
Q Consensus 327 l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-----------------~~G~~vp~~~ 388 (623)
++++|++++|++..+++||++.+| ++++|+||||||||||||++ |+..+.. +...|+|+..
T Consensus 1 i~~~~l~~~~~~~~~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~ 79 (211)
T cd03298 1 VRLDKIRFSYGEQPMHFDLTFAQG-EITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQEN 79 (211)
T ss_pred CEEEeEEEEeCCEecceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEeccc
Confidence 357899999987666999999999 99999999999999999999 6664311 1134667654
Q ss_pred CC--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCC
Q 006974 389 HP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (623)
Q Consensus 389 ~~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~gl 444 (623)
.. .+++ +..++..+|+.+..++.+.+||+||+ |++++++++.+|+++||||||+|+
T Consensus 80 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~L 159 (211)
T cd03298 80 NLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAAL 159 (211)
T ss_pred ccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 11 1111 22345666777778889999999999 799999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974 445 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (623)
Q Consensus 445 D~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~ 493 (623)
|+.....+...+.+...+.+.|+|++||+.+ +..+||+++.+.+|++..
T Consensus 160 D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 160 DPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA 209 (211)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEee
Confidence 9999999999555433345889999999988 567899999999998753
No 58
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.94 E-value=4.6e-26 Score=231.40 Aligned_cols=166 Identities=19% Similarity=0.221 Sum_probs=132.8
Q ss_pred EEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------hhh
Q 006974 327 MTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------SKA 380 (623)
Q Consensus 327 l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------------a~~ 380 (623)
++++||++.|+ +..+ ++||++.+| ++++|+||||||||||||+| |+..+. .+.
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPG-EFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 67899999997 5555 999999999 99999999999999999999 665321 112
Q ss_pred ceeecCCCCC--CccH-----------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHh
Q 006974 381 GLYLPAKNHP--RLPW-----------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILEL 428 (623)
Q Consensus 381 G~~vp~~~~~--~l~~-----------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l 428 (623)
..|+|+.... .+++ +..++..+|+....++.+++||+||+ |+++++++
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 160 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARAL 160 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 3567776311 1111 12345567777778899999999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~-~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+.+|+++||||||+|+|+.....+... +..+. +.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 161 ~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~ 227 (243)
T TIGR02315 161 AQQPDLILADEPIASLDPKTSKQVMDY-LKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFD 227 (243)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence 999999999999999999999999984 44454 44789999999988 4579999999999987643
No 59
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=2.3e-27 Score=226.11 Aligned_cols=167 Identities=22% Similarity=0.335 Sum_probs=143.7
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhhhc-e
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG-L 382 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~~G-~ 382 (623)
.+.++|+.|+|+.+.| ++||++.+| +++++.||||+||||.+.++ |++.+ .|+.| .
T Consensus 4 ~L~a~~l~K~y~kr~Vv~~Vsl~v~~G-EiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 4 TLVAENLAKSYKKRKVVNDVSLEVNSG-EIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred EEEehhhhHhhCCeeeeeeeeEEEcCC-cEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence 5788999999998777 999999999 99999999999999999999 88764 24555 4
Q ss_pred eecCCCC--CCccH-----------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974 383 YLPAKNH--PRLPW-----------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (623)
Q Consensus 383 ~vp~~~~--~~l~~-----------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL 436 (623)
|+||+.+ -.+++ .+.++..+++....+++..+||||++ |+-+|++++.+|+++|
T Consensus 83 YLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiL 162 (243)
T COG1137 83 YLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFIL 162 (243)
T ss_pred cccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEE
Confidence 8898762 12333 23456667777777889999999999 7899999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCch-hHHhhccccceeeCceEEEe
Q 006974 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA-DLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 437 LDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~-~l~~~~~~~~~i~~g~~~~~ 494 (623)
||||++|.||.....+-. ++.+|+++|.-|++|-|+. +...+||+.+++..|++.+.
T Consensus 163 LDEPFAGVDPiaV~dIq~-iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~ 220 (243)
T COG1137 163 LDEPFAGVDPIAVIDIQR-IIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAE 220 (243)
T ss_pred ecCCccCCCchhHHHHHH-HHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEec
Confidence 999999999999999988 8999999999999999995 57789999999999998765
No 60
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.94 E-value=3e-26 Score=247.95 Aligned_cols=167 Identities=22% Similarity=0.275 Sum_probs=138.4
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhcee
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY 383 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~~ 383 (623)
+++++||+++|++..+ ++||++.+| ++++|+||||||||||||++ |++.+. ++...+
T Consensus 3 ~L~~~nls~~y~~~~vL~~vs~~i~~G-eiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREG-SLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred eEEEeeEEEEECCEEEEEeeEEEECCC-CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 4789999999988766 999999999 99999999999999999999 776431 122346
Q ss_pred ecCCCCC--CccH-------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974 384 LPAKNHP--RLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (623)
Q Consensus 384 vp~~~~~--~l~~-------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll 435 (623)
+|+.... .+++ ++.++..+|+.+..++.+.+||+||+ |+.++++++.+|+++
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iL 161 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVL 161 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 7776421 1111 23456777888888999999999999 899999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH-HhhccccceeeCceEEEe
Q 006974 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (623)
Q Consensus 436 LLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l-~~~~~~~~~i~~g~~~~~ 494 (623)
||||||+|||+.....+.. ++..+.+.+.|+|++||++++ ..+|++++.+.+|++..+
T Consensus 162 LLDEPtsgLD~~~~~~l~~-lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~ 220 (402)
T PRK09536 162 LLDEPTASLDINHQVRTLE-LVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAA 220 (402)
T ss_pred EEECCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999998 566676668899999999985 589999999999998764
No 61
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.94 E-value=3.7e-26 Score=231.04 Aligned_cols=166 Identities=21% Similarity=0.250 Sum_probs=133.1
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhcee
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLY 383 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G~~ 383 (623)
++++||++.|++..+ ++||++.+| ++++|+||||||||||||++ |++.+. .....|
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPG-EIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCC-cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 357899999987655 999999999 99999999999999999999 765421 011346
Q ss_pred ecCCCC--CCccH-------------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhc
Q 006974 384 LPAKNH--PRLPW-------------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV 429 (623)
Q Consensus 384 vp~~~~--~~l~~-------------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~ 429 (623)
+|+... ..+++ +..++..+|+....++.+++|||||+ |++++++++
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~ 159 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALA 159 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHh
Confidence 777631 01111 22345566777777889999999999 799999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
.+|+++||||||+|||+.....+... +..+.+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 160 ~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~ 224 (236)
T cd03219 160 TDPKLLLLDEPAAGLNPEETEELAEL-IRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAE 224 (236)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEee
Confidence 99999999999999999999999994 4455656889999999988 5578999999999988654
No 62
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.5e-26 Score=232.60 Aligned_cols=167 Identities=20% Similarity=0.239 Sum_probs=138.0
Q ss_pred cEEEceeeeecCCc-cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhc
Q 006974 326 EMTVGSLSKGISDF-PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAG 381 (623)
Q Consensus 326 ~l~~~~l~~~y~~~-~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G 381 (623)
++.++++++.|++. .+ ++++++.+| +.++|+||||||||||++++ |++.+- .+..
T Consensus 3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~G-e~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGRKAALKDVSLEIEKG-ERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCCceeeeeeEEEECCC-CEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 57889999999764 44 999999999 99999999999999999999 666431 1223
Q ss_pred eeecCCCCCCc---cH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974 382 LYLPAKNHPRL---PW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (623)
Q Consensus 382 ~~vp~~~~~~l---~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL 436 (623)
.+|+|.+...+ ++ ++.++..+|+.+..++.+.+||||++ |+++|..++.+|.++|
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~ili 161 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILL 161 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEE
Confidence 35655542111 01 34567888999999999999999999 8999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 437 IDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 437 LDEp~~glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|||||+||||..+..+.. ++..+.+. |.|+|++|||++ +..+|++++.+.+|++..+
T Consensus 162 LDEPta~LD~~~~~~l~~-~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~ 220 (235)
T COG1122 162 LDEPTAGLDPKGRRELLE-LLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILAD 220 (235)
T ss_pred EcCCCCCCCHHHHHHHHH-HHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeec
Confidence 999999999999999999 66667765 689999999998 6678999999999998655
No 63
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.94 E-value=2.3e-26 Score=241.21 Aligned_cols=165 Identities=19% Similarity=0.287 Sum_probs=136.5
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhhceeec
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP 385 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~G~~vp 385 (623)
++++|++++|++..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+...|+|
T Consensus 3 l~~~~l~~~~~~~~~l~~is~~i~~G-ei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~ 81 (301)
T TIGR03522 3 IRVSSLTKLYGTQNALDEVSFEAQKG-RIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP 81 (301)
T ss_pred EEEEEEEEEECCEEEEEEeEEEEeCC-eEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEec
Confidence 678999999987666 999999999 99999999999999999999 775431 11234777
Q ss_pred CCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974 386 AKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (623)
Q Consensus 386 ~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~ 441 (623)
+... ..+++ ++.++..+|+.+..++.+++||+||+ |+.++++++.+|+++||||||
T Consensus 82 q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt 161 (301)
T TIGR03522 82 EHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPT 161 (301)
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 7642 11122 23445667888888999999999999 899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 442 ~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+||||.....+... +..+++ +.|+|++||+++ +..+|+++..+.+|++.+.
T Consensus 162 ~gLD~~~~~~l~~~-l~~~~~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~ 213 (301)
T TIGR03522 162 TGLDPNQLVEIRNV-IKNIGK-DKTIILSTHIMQEVEAICDRVIIINKGKIVAD 213 (301)
T ss_pred ccCCHHHHHHHHHH-HHHhcC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999994 555665 689999999987 7789999999999999865
No 64
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3.1e-26 Score=234.70 Aligned_cols=167 Identities=16% Similarity=0.201 Sum_probs=132.9
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--------------hhceeecCCCC
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------------KAGLYLPAKNH 389 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--------------~~G~~vp~~~~ 389 (623)
++++|+++.|++..+ ++||++.+| ++++|+||||||||||||++ |++.+.. ....|+|+...
T Consensus 2 l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~ 80 (255)
T PRK11248 2 LQISHLYADYGGKPALEDINLTLESG-ELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEG 80 (255)
T ss_pred EEEEEEEEEeCCeeeEeeeeEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCc
Confidence 678999999987655 999999999 99999999999999999999 7764321 11246676531
Q ss_pred --CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCC
Q 006974 390 --PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 445 (623)
Q Consensus 390 --~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD 445 (623)
...++ +..++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+|||
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD 160 (255)
T PRK11248 81 LLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALD 160 (255)
T ss_pred cCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 11111 22345677777777889999999999 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceee--CceEEEe
Q 006974 446 PSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE--NAATEFS 494 (623)
Q Consensus 446 ~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~--~g~~~~~ 494 (623)
+.....+...+.+...+.|.|+|++||+.+ +..+|++++.+. +|++...
T Consensus 161 ~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~ 212 (255)
T PRK11248 161 AFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVER 212 (255)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEE
Confidence 999999999544433445889999999988 568999999998 4777554
No 65
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=3.4e-26 Score=231.99 Aligned_cols=166 Identities=19% Similarity=0.213 Sum_probs=134.0
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeecC
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPA 386 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp~ 386 (623)
++++||++.|++..+ ++||++.+| ++++|+||||||||||||++ |+..+. .+...|+|+
T Consensus 3 l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 81 (239)
T cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSG-ELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ 81 (239)
T ss_pred EEEEeEEEEECCEEeeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence 678999999987655 999999999 99999999999999999999 765431 012346676
Q ss_pred CCCC--CccH-------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEe
Q 006974 387 KNHP--RLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (623)
Q Consensus 387 ~~~~--~l~~-------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLD 438 (623)
.... .+++ ++.++..+|+....++.+++||+||+ |++++++++.+|+++|||
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 161 (239)
T cd03296 82 HYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLD 161 (239)
T ss_pred CCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 5311 1111 12345666777777889999999999 899999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 439 EIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 439 Ep~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|||+|||+.....+.. ++..+.+ .+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 162 EP~~~LD~~~~~~l~~-~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (239)
T cd03296 162 EPFGALDAKVRKELRR-WLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQV 218 (239)
T ss_pred CCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEe
Confidence 9999999999999999 4555554 4789999999987 5788999999999988654
No 66
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.94 E-value=2.6e-26 Score=228.52 Aligned_cols=162 Identities=22% Similarity=0.258 Sum_probs=130.1
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------hhhce
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAGL 382 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------a~~G~ 382 (623)
++++||++.|++..+ ++||++.+| ++++|+||||||||||||++ |+..+. .+...
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G-~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKG-EVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 357899999987655 999999999 99999999999999999999 765421 11234
Q ss_pred eecCCCCC--CccHH----------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974 383 YLPAKNHP--RLPWF----------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (623)
Q Consensus 383 ~vp~~~~~--~l~~~----------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLL 437 (623)
|+|+.... .+++. ..++..+|+...+++.+.+||+||+ |++++++++.+|+++||
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 159 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLF 159 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 67765421 11221 2345566777778899999999999 79999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCce
Q 006974 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAA 490 (623)
Q Consensus 438 DEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~ 490 (623)
||||+|||+.....+.. ++..+.+.+.|+|++||+.+ +..+|+++..+.+|+
T Consensus 160 DEP~~~LD~~~~~~l~~-~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~ 212 (213)
T cd03262 160 DEPTSALDPELVGEVLD-VMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGR 212 (213)
T ss_pred eCCccCCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999999999999999 45556666789999999987 567999998888775
No 67
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.94 E-value=6.4e-26 Score=231.39 Aligned_cols=167 Identities=21% Similarity=0.214 Sum_probs=134.6
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------------
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------- 377 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------------- 377 (623)
+++++||++.|++..+ ++||++.+| ++++|+||||||||||+|++ |++.+.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPG-EVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 4789999999987655 999999999 99999999999999999999 665321
Q ss_pred --hhhceeecCCCCC--CccHH----------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcC
Q 006974 378 --SKAGLYLPAKNHP--RLPWF----------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS 430 (623)
Q Consensus 378 --a~~G~~vp~~~~~--~l~~~----------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~ 430 (623)
.+...|+|+.... ..+.. ..++..+|+.+..++.+++||+||+ |++++++++.
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~ 161 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAM 161 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhc
Confidence 1123467765311 11221 2235556777777889999999999 8999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+|+++||||||+|||+.....+.. ++..+.+.+.++|++||+.+ +..+|++++.+.+|++...
T Consensus 162 ~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~ 225 (250)
T PRK11264 162 RPEVILFDEPTSALDPELVGEVLN-TIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQ 225 (250)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 999999999999999999999999 55556666889999999987 5578999999999988654
No 68
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.94 E-value=3.5e-26 Score=231.52 Aligned_cols=166 Identities=20% Similarity=0.208 Sum_probs=133.9
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------------------hhceeec
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------------------KAGLYLP 385 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------------------~~G~~vp 385 (623)
++++|++++|++..+ ++||++.+| ++++|+||||||||||+++| |+..+.+ +...|+|
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 2 LEVAGLSFAYGARRALDDVSFTVRPG-EFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred EEEEeeEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence 678999999987665 999999999 99999999999999999999 6654310 1234777
Q ss_pred CCCCC--CccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974 386 AKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (623)
Q Consensus 386 ~~~~~--~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~ 441 (623)
+.... ..++. ..++..+|+.+.+++.+++||+||+ |++++++++.+|+++||||||
T Consensus 81 q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~ 160 (236)
T TIGR03864 81 QQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPT 160 (236)
T ss_pred CCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 65321 11111 2345667777778899999999999 799999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-cCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 442 SGTDPSEGVALATSILQYLR-DRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 442 ~glD~~~~~~l~~all~~l~-~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
+|+|+.....+...+. .+. +.+.|+|++||+.+....|++++.+.+|++...
T Consensus 161 ~~LD~~~~~~l~~~l~-~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~ 213 (236)
T TIGR03864 161 VGLDPASRAAIVAHVR-ALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLAD 213 (236)
T ss_pred cCCCHHHHHHHHHHHH-HHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEe
Confidence 9999999999999555 455 458899999999985556999999999988654
No 69
>PRK10908 cell division protein FtsE; Provisional
Probab=99.94 E-value=3.4e-26 Score=229.37 Aligned_cols=164 Identities=13% Similarity=0.141 Sum_probs=132.2
Q ss_pred EEEceeeeec-CCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------hhh
Q 006974 327 MTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------SKA 380 (623)
Q Consensus 327 l~~~~l~~~y-~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------------a~~ 380 (623)
++++|+++.| ++..+ ++||++.+| ++++|+||||||||||+|+| |+..+- .+.
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPG-EMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 6789999999 55554 999999999 99999999999999999999 665421 112
Q ss_pred ceeecCCCCC--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974 381 GLYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (623)
Q Consensus 381 G~~vp~~~~~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL 436 (623)
..|+|+.... ..++ ++.++..+|+.+..++.+++||+||+ |++++++++.+|+++|
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 160 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLL 160 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 3477776421 1111 12345667777778899999999999 8999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEE
Q 006974 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (623)
Q Consensus 437 LDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~ 492 (623)
|||||+|||+.....+.. ++..+.+.+.++|++||+.+ +..+|++++.+.+|++.
T Consensus 161 lDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 161 ADEPTGNLDDALSEGILR-LFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred EeCCCCcCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 999999999999999999 45556666889999999987 56789999999998864
No 70
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.94 E-value=3.6e-26 Score=216.41 Aligned_cols=168 Identities=16% Similarity=0.212 Sum_probs=137.4
Q ss_pred cEEEceeeeecCCcc-c--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh----------------------hhh
Q 006974 326 EMTVGSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------------MSK 379 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~-v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~----------------------~a~ 379 (623)
+|+++||+|.|++.. . ++||++++| +++-|+||+|||||||||+| +...+ +.+
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~G-ef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKG-EFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCc-eEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 368899999997654 3 999999999 99999999999999999999 32221 222
Q ss_pred hceeecCCCC--CCccHHH---------------------HHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974 380 AGLYLPAKNH--PRLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (623)
Q Consensus 380 ~G~~vp~~~~--~~l~~~d---------------------~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll 435 (623)
....|+|+.. ...+++| .++..+|+.+..+..++.||||++ |+++|++.+++|.+|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vL 159 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVL 159 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeE
Confidence 2235666531 1122232 457888999999999999999998 899999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH-HhhccccceeeCceEEEec
Q 006974 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFSL 495 (623)
Q Consensus 436 LLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l-~~~~~~~~~i~~g~~~~~~ 495 (623)
|.||||.+|||.....|.. +++.+...|.||+++|||.++ ..+..++..+.+|.+.-+.
T Consensus 160 lADEPTGNLDp~~s~~im~-lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 160 LADEPTGNLDPDLSWEIMR-LFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred eecCCCCCCChHHHHHHHH-HHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 9999999999999999999 888899999999999999985 4566777889999987664
No 71
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=7.9e-26 Score=229.26 Aligned_cols=166 Identities=20% Similarity=0.257 Sum_probs=132.1
Q ss_pred EEEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------hhh
Q 006974 327 MTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------SKA 380 (623)
Q Consensus 327 l~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------------a~~ 380 (623)
++++||+++|++ ..+ ++||++.+| ++++|+||||||||||||++ |++.+- .+.
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPG-EFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 357899999986 555 999999999 99999999999999999999 665421 112
Q ss_pred ceeecCCCC--CCccHH-----------------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHh
Q 006974 381 GLYLPAKNH--PRLPWF-----------------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILEL 428 (623)
Q Consensus 381 G~~vp~~~~--~~l~~~-----------------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l 428 (623)
..|+|+... ..+++. ..++..+|+....++.+.+||+||+ |+++++++
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 159 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARAL 159 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHH
Confidence 346776531 111111 2235566777777889999999999 79999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+.+|+++||||||+|||+.....+... +..+.+ .|.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~ 226 (241)
T cd03256 160 MQQPKLILADEPVASLDPASSRQVMDL-LKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFD 226 (241)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 999999999999999999999999994 445554 5889999999988 4569999999999988654
No 72
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4.2e-26 Score=235.74 Aligned_cols=166 Identities=17% Similarity=0.194 Sum_probs=134.2
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------hhhce
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAGL 382 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------a~~G~ 382 (623)
++++||+++|++..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+...
T Consensus 2 l~~~~l~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 2 LATSDLWFRYQDEPVLKGLNLDFSLS-PVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred eEEEEEEEEcCCcccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 678999999987655 999999999 99999999999999999999 665421 11234
Q ss_pred eecCCCCC---CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974 383 YLPAKNHP---RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (623)
Q Consensus 383 ~vp~~~~~---~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLL 437 (623)
|+|+.... ...+ ++.++..+|+.+..++.+++|||||+ |++++++++.+|+++||
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllL 160 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLL 160 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 77776310 0011 12345566777777889999999999 89999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 438 DEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
||||+|||+.....+.. ++..+.+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 161 DEPt~~LD~~~~~~l~~-~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~ 217 (271)
T PRK13638 161 DEPTAGLDPAGRTQMIA-IIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTH 217 (271)
T ss_pred eCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999 45556666889999999988 5578999999999998765
No 73
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.94 E-value=4.6e-26 Score=228.08 Aligned_cols=163 Identities=21% Similarity=0.234 Sum_probs=129.9
Q ss_pred EEEceeeeecCC----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------
Q 006974 327 MTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------- 377 (623)
Q Consensus 327 l~~~~l~~~y~~----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------- 377 (623)
++++||++.|++ ..+ ++||++.+| ++++|+||||||||||||++ |+..+.
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G-~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKG-EIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 678999999964 234 999999999 99999999999999999999 665320
Q ss_pred h-hhceeecCCCCC--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCC
Q 006974 378 S-KAGLYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (623)
Q Consensus 378 a-~~G~~vp~~~~~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~ 432 (623)
. +...|+|+.... .+++ +..++..+|+.+..++.+++||+||+ |++++++++.+|
T Consensus 81 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 160 (221)
T TIGR02211 81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQP 160 (221)
T ss_pred HHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCC
Confidence 0 223577776411 1122 12345667777778899999999999 799999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhHHhhccccceeeCceE
Q 006974 433 SLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAAT 491 (623)
Q Consensus 433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l~~~~~~~~~i~~g~~ 491 (623)
+++||||||+|||+.....+...+ ..+.+ .+.|+|++||+.+....+++++.+.+|++
T Consensus 161 ~illlDEPt~~LD~~~~~~l~~~l-~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i 219 (221)
T TIGR02211 161 SLVLADEPTGNLDNNNAKIIFDLM-LELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQL 219 (221)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEe
Confidence 999999999999999999999954 45554 57899999999986666888888888875
No 74
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.94 E-value=5.5e-26 Score=243.39 Aligned_cols=169 Identities=18% Similarity=0.214 Sum_probs=138.8
Q ss_pred CCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-------------------hhc
Q 006974 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-------------------KAG 381 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-------------------~~G 381 (623)
.+.++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |+..+-+ +..
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~i 81 (362)
T TIGR03258 3 CGGIRIDHLRVAYGANTVLDDLSLEIEAG-ELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGL 81 (362)
T ss_pred ceEEEEEEEEEEECCeEEEeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCE
Confidence 467899999999987655 999999999 99999999999999999999 7665432 112
Q ss_pred eeecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974 382 LYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (623)
Q Consensus 382 ~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLL 437 (623)
.|+|+... ..+++ ++.++..+|+.+..++.+.+|||||+ |++++++++.+|+++||
T Consensus 82 g~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLL 161 (362)
T TIGR03258 82 ALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLL 161 (362)
T ss_pred EEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 36666541 11122 23456677888889999999999999 89999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcC--CcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 438 DEIGSGTDPSEGVALATSILQYLRDR--VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 438 DEp~~glD~~~~~~l~~all~~l~~~--~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|||++|||+..+..+...+. .+.++ |.|+|++|||.+ ...+||++..+.+|++...
T Consensus 162 DEP~s~LD~~~r~~l~~~l~-~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~ 220 (362)
T TIGR03258 162 DEPLSALDANIRANMREEIA-ALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAH 220 (362)
T ss_pred cCccccCCHHHHHHHHHHHH-HHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999554 55554 789999999987 5689999999999998754
No 75
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.94 E-value=4.2e-26 Score=228.48 Aligned_cols=166 Identities=22% Similarity=0.272 Sum_probs=131.6
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhcee
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLY 383 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G~~ 383 (623)
++++||++.|++..+ ++||++.+| ++++|+|||||||||||+++ |++.+. .+...|
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEG-EIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 367899999987655 999999999 99999999999999999999 665421 112346
Q ss_pred ecCCCC--CCccHHH-------------------HHHHHc-CCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCC
Q 006974 384 LPAKNH--PRLPWFD-------------------LILADI-GDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 440 (623)
Q Consensus 384 vp~~~~--~~l~~~d-------------------~i~~~i-g~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp 440 (623)
+|+... ..+++.+ .++..+ +..+..++.+++||+||+ |++++++++.+|+++|||||
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 159 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEP 159 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 777641 1112211 233444 355667888999999999 79999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 441 ~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|+|||+.....+... +..+.+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 160 t~~LD~~~~~~l~~~-l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 213 (222)
T cd03224 160 SEGLAPKIVEEIFEA-IRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLE 213 (222)
T ss_pred cccCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEe
Confidence 999999999999995 4455656889999999988 5789999999999987654
No 76
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.94 E-value=5.2e-26 Score=230.75 Aligned_cols=166 Identities=21% Similarity=0.245 Sum_probs=134.7
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------hhhce
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAGL 382 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------a~~G~ 382 (623)
++++|+++.|++..+ ++||++.+| ++++|+||||||||||++++ |++.+. .+...
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 2 IEFKNVSKHFGPTQVLHNIDLNIDQG-EVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred EEEEeEEEEECCeEEeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 678999999987655 999999999 99999999999999999999 765421 11234
Q ss_pred eecCCCCC--CccH----------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974 383 YLPAKNHP--RLPW----------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (623)
Q Consensus 383 ~vp~~~~~--~l~~----------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLL 437 (623)
|+|+.... .+++ +..++..+|+...+++.+++||+||+ |++++++++.+|+++||
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 160 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLF 160 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 67765311 1111 12345677777778899999999999 79999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 438 DEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
||||+|+|+.....+.. ++..+.+++.++|++||+.+ +..+|++++.+.+|++...
T Consensus 161 DEP~~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 217 (240)
T PRK09493 161 DEPTSALDPELRHEVLK-VMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAED 217 (240)
T ss_pred cCCcccCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 99999999999999999 55556666889999999988 4578999999999998754
No 77
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.94 E-value=3.2e-26 Score=228.02 Aligned_cols=162 Identities=15% Similarity=0.194 Sum_probs=128.8
Q ss_pred EEEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------hhh
Q 006974 327 MTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------SKA 380 (623)
Q Consensus 327 l~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------------a~~ 380 (623)
++++|+++.|++ ..+ ++||++.+| ++++|+||||||||||||++ |+..+. .+.
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G-~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAG-EFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 357899999964 344 999999999 99999999999999999999 665321 112
Q ss_pred ceeecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974 381 GLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (623)
Q Consensus 381 G~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL 436 (623)
..|+|+... ..+++ ++.++..+|+.+..++.+.+||+||+ |++++++++.+|+++|
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 159 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILI 159 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEE
Confidence 356777641 11111 12345666777778889999999999 7999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCce
Q 006974 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAA 490 (623)
Q Consensus 437 LDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~ 490 (623)
|||||+|||+.....+...+ ..+.+++.|+|++||+.+ +..+|+++..+.+|+
T Consensus 160 lDEPt~~LD~~~~~~~~~~l-~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~ 213 (214)
T cd03292 160 ADEPTGNLDPDTTWEIMNLL-KKINKAGTTVVVATHAKELVDTTRHRVIALERGK 213 (214)
T ss_pred EeCCCCcCCHHHHHHHHHHH-HHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999999999999999954 456666889999999987 556899998888775
No 78
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=7.2e-26 Score=228.61 Aligned_cols=167 Identities=20% Similarity=0.273 Sum_probs=135.0
Q ss_pred EEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-----------------hhceeecCCC
Q 006974 327 MTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-----------------KAGLYLPAKN 388 (623)
Q Consensus 327 l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-----------------~~G~~vp~~~ 388 (623)
++++||+++|++...++||++.+| ++++|+||||||||||||++ |+..+.+ ....|+|+..
T Consensus 2 l~~~~l~~~~~~~~~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~ 80 (232)
T PRK10771 2 LKLTDITWLYHHLPMRFDLTVERG-ERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQEN 80 (232)
T ss_pred eEEEEEEEEECCccceeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEeccc
Confidence 678999999987666999999999 99999999999999999999 7654311 1234667653
Q ss_pred C--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCC
Q 006974 389 H--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (623)
Q Consensus 389 ~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~gl 444 (623)
. ..+++ +..++..+|+...+++.+.+||+||+ |++++++++.+|+++||||||+||
T Consensus 81 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gL 160 (232)
T PRK10771 81 NLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSAL 160 (232)
T ss_pred ccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 1 01111 22345667887788999999999999 799999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 445 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 445 D~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 161 D~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~ 211 (232)
T PRK10771 161 DPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWD 211 (232)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999555443445889999999988 5678999999999988654
No 79
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.93 E-value=5.9e-26 Score=234.45 Aligned_cols=167 Identities=20% Similarity=0.181 Sum_probs=135.0
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------hhh
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------SKA 380 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------------a~~ 380 (623)
+++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+. .+.
T Consensus 7 ~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~ 85 (269)
T PRK11831 7 LVDMRGVSFTRGNRCIFDNISLTVPRG-KITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85 (269)
T ss_pred eEEEeCeEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhc
Confidence 5889999999987655 999999999 99999999999999999999 665421 112
Q ss_pred ceeecCCCCC--CccHHH----------------------HHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974 381 GLYLPAKNHP--RLPWFD----------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (623)
Q Consensus 381 G~~vp~~~~~--~l~~~d----------------------~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll 435 (623)
..|+|+.... .+++.+ .++..+|+.+..++.+++|||||+ |+.++++++.+|+++
T Consensus 86 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~ll 165 (269)
T PRK11831 86 MSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLI 165 (269)
T ss_pred EEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 3467776421 112222 234566777778889999999999 799999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 436 LIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 436 LLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
||||||+|||+.....+...+. .+.+ .|.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 166 lLDEPt~~LD~~~~~~l~~~l~-~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~ 225 (269)
T PRK11831 166 MFDEPFVGQDPITMGVLVKLIS-ELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAH 225 (269)
T ss_pred EEcCCCccCCHHHHHHHHHHHH-HHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEe
Confidence 9999999999999999999554 5554 4789999999987 6688999999999988754
No 80
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.93 E-value=5.7e-26 Score=227.25 Aligned_cols=165 Identities=23% Similarity=0.321 Sum_probs=132.3
Q ss_pred EEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhhcee
Q 006974 327 MTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLY 383 (623)
Q Consensus 327 l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~G~~ 383 (623)
++++||++.|++ ..+ ++||++.+| ++++|+||||||||||||++ |+..+. .+...|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKG-EIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 367899999976 455 999999999 99999999999999999999 665431 111346
Q ss_pred ecCCCCC--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeC
Q 006974 384 LPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (623)
Q Consensus 384 vp~~~~~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDE 439 (623)
+|+.... ..++ ++.++..+|+.+..++.+++||+||+ |++++++++.+|+++||||
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 159 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDE 159 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 6765311 1111 12345667887778889999999999 7999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 440 p~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
||+|+|+.....+.. ++..+.+ +.|+|++||+.+ +..+|+++..+.+|++...
T Consensus 160 P~~~LD~~~~~~l~~-~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 213 (220)
T cd03263 160 PTSGLDPASRRAIWD-LILEVRK-GRSIILTTHSMDEAEALCDRIAIMSDGKLRCI 213 (220)
T ss_pred CCCCCCHHHHHHHHH-HHHHHhc-CCEEEEEcCCHHHHHHhcCEEEEEECCEEEec
Confidence 999999999999999 4555555 589999999988 4578999999999988654
No 81
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.1e-25 Score=230.21 Aligned_cols=168 Identities=15% Similarity=0.235 Sum_probs=135.0
Q ss_pred CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh-c
Q 006974 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA-G 381 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~-G 381 (623)
.+++++|+++.|++..+ ++||++.+| ++++|+||||||||||++++ |++.+. .+. .
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 4 PLLSVSGLMMRFGGLLAVNNVNLEVREQ-EIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred ceEEEeeEEEEECCEEEEEeeeeEEcCC-eEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 36889999999987655 999999999 99999999999999999999 765421 011 2
Q ss_pred eeecCCCC--CCccHH------------------------------------HHHHHHcCCchhhhcccccccHHHH-HH
Q 006974 382 LYLPAKNH--PRLPWF------------------------------------DLILADIGDHQSLEQNLSTFSGHIS-RI 422 (623)
Q Consensus 382 ~~vp~~~~--~~l~~~------------------------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl 422 (623)
.|+|+... ..+++. ..++..+|+.+..++.+++||+||+ |+
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv 162 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRL 162 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHH
Confidence 35676531 111111 1234567777788899999999999 89
Q ss_pred HHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 423 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 423 ~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
.++++++.+|+++||||||+|||+.....+.. ++..++++ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 163 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 235 (255)
T PRK11300 163 EIARCMVTQPEILMLDEPAAGLNPKETKELDE-LIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLAN 235 (255)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHH-HHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEec
Confidence 99999999999999999999999999999999 45556554 889999999987 4578999999999988654
No 82
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.93 E-value=4.5e-26 Score=239.18 Aligned_cols=158 Identities=22% Similarity=0.292 Sum_probs=128.1
Q ss_pred ecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhhceeecCCCC--CC
Q 006974 335 GISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLPAKNH--PR 391 (623)
Q Consensus 335 ~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~G~~vp~~~~--~~ 391 (623)
.|++..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+...|+|+... ..
T Consensus 2 ~y~~~~~l~~vs~~i~~G-e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 2 VYGDFKAVDGVNFKVREG-EVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred eeCCeeEEeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 4554444 999999999 99999999999999999999 776431 112346777642 11
Q ss_pred ccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHH
Q 006974 392 LPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 449 (623)
Q Consensus 392 l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~ 449 (623)
+++ ++.++..+|+.+..++.+++|||||+ |+++|++++.+|+++||||||+||||...
T Consensus 81 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 160 (302)
T TIGR01188 81 LTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTR 160 (302)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 111 23456777888888999999999999 79999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 450 VALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 450 ~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
..+.. ++..+++.|.|+|++||+++ +..+|+++..+.+|++...
T Consensus 161 ~~l~~-~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~ 205 (302)
T TIGR01188 161 RAIWD-YIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAE 205 (302)
T ss_pred HHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999 55556666889999999987 5679999999999998765
No 83
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=5.8e-26 Score=242.22 Aligned_cols=166 Identities=15% Similarity=0.179 Sum_probs=134.6
Q ss_pred EEEceeeeecC----Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------
Q 006974 327 MTVGSLSKGIS----DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------- 377 (623)
Q Consensus 327 l~~~~l~~~y~----~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------- 377 (623)
++++||+++|+ +..+ ++||++.+| ++++|+||||||||||||++ |++.+.
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~G-ei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAG-EIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 67899999997 2344 999999999 99999999999999999999 776421
Q ss_pred hhhceeecCCCC--CCccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCc
Q 006974 378 SKAGLYLPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES 433 (623)
Q Consensus 378 a~~G~~vp~~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~ 433 (623)
.+...|+|+... ..+++. ..++..+|+.+..++.+++|||||+ |+.+|++++.+|+
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 160 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 122357777642 112222 2345667888888899999999999 8999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 434 LVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 434 LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
++||||||+|||+.....+...+ ..+.+ .|.|+|++||+++ +..+|++++.+.+|++...
T Consensus 161 iLlLDEPts~LD~~~~~~l~~~L-~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~ 222 (343)
T PRK11153 161 VLLCDEATSALDPATTRSILELL-KDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQ 222 (343)
T ss_pred EEEEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999954 44544 4889999999988 5678999999999998764
No 84
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.93 E-value=9e-26 Score=227.17 Aligned_cols=167 Identities=19% Similarity=0.265 Sum_probs=132.3
Q ss_pred CcEEEceeeeecCCc----cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------
Q 006974 325 SEMTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------- 377 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~----~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------- 377 (623)
.+++++||+++|++. .+ ++||++.+| ++++|+||||||||||||++ |+..+.
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRG-ETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCC-CEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence 368899999999752 23 999999999 99999999999999999999 765421
Q ss_pred ---hhhceeecCCCC--CCccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcC
Q 006974 378 ---SKAGLYLPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS 430 (623)
Q Consensus 378 ---a~~G~~vp~~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~ 430 (623)
.+...|+|+... ..++.. ..++..+|+.+..++.+++||+||+ |+.++++++.
T Consensus 84 ~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~ 163 (228)
T PRK10584 84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNG 163 (228)
T ss_pred HHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 012346776632 111222 2345666777778889999999999 7999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEE
Q 006974 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATE 492 (623)
Q Consensus 431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~ 492 (623)
+|+++||||||+|||+.....+...+.+...+.+.++|++||+.+....|++++.+.+|++.
T Consensus 164 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~ 225 (228)
T PRK10584 164 RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQ 225 (228)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999955443334578999999999866679999999998874
No 85
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.93 E-value=5.3e-26 Score=226.49 Aligned_cols=159 Identities=24% Similarity=0.330 Sum_probs=128.0
Q ss_pred EceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------hhhceeecCCCCC-
Q 006974 329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------SKAGLYLPAKNHP- 390 (623)
Q Consensus 329 ~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------a~~G~~vp~~~~~- 390 (623)
++||++.|++..+ ++||++.+| ++++|+||||||||||||++ |+..+. .+...|+|+....
T Consensus 2 ~~~l~~~~~~~~~l~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~ 80 (213)
T cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPG-EFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSID 80 (213)
T ss_pred cccceeEECCEEeeecceeEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccc
Confidence 5789999987555 999999999 99999999999999999999 775431 1223477765321
Q ss_pred ---CccH-------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974 391 ---RLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (623)
Q Consensus 391 ---~l~~-------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~ 441 (623)
..+. +..++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 160 (213)
T cd03235 81 RDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPF 160 (213)
T ss_pred cCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 0111 22345666777778899999999999 899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCc
Q 006974 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENA 489 (623)
Q Consensus 442 ~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g 489 (623)
+|||+.....+...+.+ +.+.+.|+|++||+.+ +..+|++++.+.++
T Consensus 161 ~~LD~~~~~~l~~~l~~-~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~ 208 (213)
T cd03235 161 AGVDPKTQEDIYELLRE-LRREGMTILVVTHDLGLVLEYFDRVLLLNRT 208 (213)
T ss_pred ccCCHHHHHHHHHHHHH-HHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc
Confidence 99999999999995554 5556889999999987 56789999888775
No 86
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.93 E-value=2.8e-26 Score=219.43 Aligned_cols=150 Identities=21% Similarity=0.231 Sum_probs=118.7
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccH--------HH
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW--------FD 396 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~--------~d 396 (623)
++++|++++|++.++ +++|++.+| ++++|+||||+||||||+++ .|...|..|...+.. .+
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~G-e~~~l~G~nGsGKSTLl~~i--------~G~~~~~~G~v~~~g~~~~~~~~~~ 71 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRG-EVHALLGENGAGKSTLMKIL--------SGLYKPDSGEILVDGKEVSFASPRD 71 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCC-CEEEEECCCCCCHHHHHHHH--------hCCCCCCCeEEEECCEECCcCCHHH
Confidence 357899999987666 999999999 99999999999999999999 665555554222111 11
Q ss_pred HHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974 397 LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (623)
Q Consensus 397 ~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~ 475 (623)
.....++ .+..||+||+ |++++++++.+|+++||||||+|||+.....+... +..+.+++.|+|++||+.+
T Consensus 72 ~~~~~i~-------~~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~-l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 72 ARRAGIA-------MVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKV-IRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred HHhcCeE-------EEEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHH
Confidence 1111111 1223999999 89999999999999999999999999999999995 4455666889999999987
Q ss_pred -HHhhccccceeeCceEEE
Q 006974 476 -LSCLKDKDTRFENAATEF 493 (623)
Q Consensus 476 -l~~~~~~~~~i~~g~~~~ 493 (623)
+..+|++.+.+.+|++.+
T Consensus 144 ~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 144 EVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHhCCEEEEEECCEEEe
Confidence 678899999999998753
No 87
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=2.6e-26 Score=226.28 Aligned_cols=159 Identities=23% Similarity=0.338 Sum_probs=134.3
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCC--------------
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH-------------- 389 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~-------------- 389 (623)
.+++++|+++||+-.+ ++||++.+| ++++|+|||||||||++++| .|.|.|..|.
T Consensus 4 lL~v~~l~k~FGGl~Al~~Vsl~v~~G-ei~~LIGPNGAGKTTlfNli--------tG~~~P~~G~v~~~G~~it~l~p~ 74 (250)
T COG0411 4 LLEVRGLSKRFGGLTAVNDVSLEVRPG-EIVGLIGPNGAGKTTLFNLI--------TGFYKPSSGTVIFRGRDITGLPPH 74 (250)
T ss_pred eeeeccceeecCCEEEEeceeEEEcCC-eEEEEECCCCCCceeeeeee--------cccccCCCceEEECCcccCCCCHH
Confidence 3678999999998665 999999999 99999999999999999999 5555555441
Q ss_pred -----------------CCccHHHH---------------------------------HHHHcCCchhhhcccccccHHH
Q 006974 390 -----------------PRLPWFDL---------------------------------ILADIGDHQSLEQNLSTFSGHI 419 (623)
Q Consensus 390 -----------------~~l~~~d~---------------------------------i~~~ig~~~~~~~~~stfS~g~ 419 (623)
..++++++ ++..+|+.+..+...++||+|+
T Consensus 75 ~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~ 154 (250)
T COG0411 75 RIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQ 154 (250)
T ss_pred HHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhH
Confidence 12223332 3556788889999999999998
Q ss_pred H-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 420 S-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 420 ~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+ ++.++++++++|+|||||||.+|++|.+...+.. ++..+++ .|.|++++.||++ +..+||+++++..|++..+
T Consensus 155 qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~-~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAe 231 (250)
T COG0411 155 QRRLEIARALATQPKLLLLDEPAAGLNPEETEELAE-LIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAE 231 (250)
T ss_pred hHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCccc
Confidence 8 6889999999999999999999999999999999 6666776 4689999999999 6789999999999987655
No 88
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.93 E-value=6.9e-26 Score=240.80 Aligned_cols=167 Identities=17% Similarity=0.175 Sum_probs=136.2
Q ss_pred cEEEceeeeecCC----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------
Q 006974 326 EMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (623)
Q Consensus 326 ~l~~~~l~~~y~~----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------- 377 (623)
+++++||++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |+..+.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~G-ei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~ 79 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAG-QIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTK 79 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3689999999952 234 999999999 99999999999999999999 665431
Q ss_pred -hhhceeecCCCCC--CccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCC
Q 006974 378 -SKAGLYLPAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (623)
Q Consensus 378 -a~~G~~vp~~~~~--~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~ 432 (623)
.+...|+|+.... ..+++ ..++..+|+.+..++.+++|||||+ |+++|++++.+|
T Consensus 80 ~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P 159 (343)
T TIGR02314 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNP 159 (343)
T ss_pred HhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCC
Confidence 1123577776421 11221 2346678888888999999999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 433 SLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+++|+||||++|||.....+.. ++..+.+ .|.|+|++||+++ +..+||++..+.+|++...
T Consensus 160 ~iLLlDEPts~LD~~t~~~i~~-lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~ 222 (343)
T TIGR02314 160 KVLLCDEATSALDPATTQSILE-LLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 222 (343)
T ss_pred CEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999 5556655 4899999999998 5689999999999998754
No 89
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.93 E-value=7.6e-26 Score=227.01 Aligned_cols=166 Identities=19% Similarity=0.222 Sum_probs=134.1
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh---------------hhceeecCCC
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS---------------KAGLYLPAKN 388 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a---------------~~G~~vp~~~ 388 (623)
++++|+++.|++..+ ++||++.+| ++++|+||||+||||||+++ |++.+.. +...|+|+..
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~ 79 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKN-SVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESP 79 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCC
Confidence 357899999987665 999999999 99999999999999999999 7654321 1223666653
Q ss_pred CC--CccHH-----------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHH
Q 006974 389 HP--RLPWF-----------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 448 (623)
Q Consensus 389 ~~--~l~~~-----------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~ 448 (623)
.. .++.. ..++..+|+.+..++.+..||+|++ |++++++++.+|+++||||||+|+|+..
T Consensus 80 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~ 159 (223)
T TIGR03740 80 PLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIG 159 (223)
T ss_pred CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHH
Confidence 11 12222 2345667888888899999999999 7999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 449 GVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 449 ~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
...+... +..+.+.+.++|++||+.+ +..+|+++..+.+|++...
T Consensus 160 ~~~l~~~-L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~ 205 (223)
T TIGR03740 160 IQELREL-IRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQ 205 (223)
T ss_pred HHHHHHH-HHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEe
Confidence 9999994 4456666889999999988 4579999999999988654
No 90
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=8.7e-26 Score=233.81 Aligned_cols=167 Identities=16% Similarity=0.115 Sum_probs=135.9
Q ss_pred cEEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhce
Q 006974 326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 382 (623)
Q Consensus 326 ~l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~ 382 (623)
.++++||++.|+ +..+ ++||++.+| ++++|+||||||||||++++ |++.+. .+...
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEG-SKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 478999999995 4444 999999999 99999999999999999999 776431 11234
Q ss_pred eecCCCC---CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974 383 YLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (623)
Q Consensus 383 ~vp~~~~---~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLL 437 (623)
|+|+... ...++ ++.++..+|+.+..++.+.+|||||+ |+.++++++.+|+++||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llll 162 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVL 162 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 7777631 11111 22345667888888999999999999 89999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH-HhhccccceeeCceEEEe
Q 006974 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (623)
Q Consensus 438 DEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l-~~~~~~~~~i~~g~~~~~ 494 (623)
||||+|||+.....+.. ++..++++|.|+|++||+++. ..+|+++..+.+|++..+
T Consensus 163 DEPt~~LD~~~~~~l~~-~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~ 219 (274)
T PRK13647 163 DEPMAYLDPRGQETLME-ILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAE 219 (274)
T ss_pred ECCCcCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999 555566568899999999984 579999999999998765
No 91
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.93 E-value=1.7e-25 Score=225.02 Aligned_cols=165 Identities=17% Similarity=0.194 Sum_probs=131.3
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhh-----hhh---------------------
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA-----SLM--------------------- 377 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~-----~~~--------------------- 377 (623)
++++||++.|++..+ ++||++.+| ++++|+||||||||||+|+| |+. .+.
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKG-EITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 367899999987655 999999999 99999999999999999999 877 421
Q ss_pred hhhceeecCCCCC-CccHH----------------------HHHHHHcCCchhhhcc--cccccHHHH-HHHHHHHhcCC
Q 006974 378 SKAGLYLPAKNHP-RLPWF----------------------DLILADIGDHQSLEQN--LSTFSGHIS-RIVDILELVSR 431 (623)
Q Consensus 378 a~~G~~vp~~~~~-~l~~~----------------------d~i~~~ig~~~~~~~~--~stfS~g~~-rl~~~~~l~~~ 431 (623)
.+...|+|+.... .+++. ..++..+|+.+..++. +++|||||+ |++++++++.+
T Consensus 80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~ 159 (227)
T cd03260 80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANE 159 (227)
T ss_pred HhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcC
Confidence 0112467776411 11111 2345566776666666 499999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|+++||||||+|||+.....+... +..+.+. .|+|++||+.+ +..+|+++..+.+|++...
T Consensus 160 p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 221 (227)
T cd03260 160 PEVLLLDEPTSALDPISTAKIEEL-IAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEF 221 (227)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHH-HHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence 999999999999999999999994 4455655 89999999988 5679999999999988654
No 92
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.5e-25 Score=233.50 Aligned_cols=166 Identities=15% Similarity=0.165 Sum_probs=134.2
Q ss_pred EEEceeeeecCC-----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------
Q 006974 327 MTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (623)
Q Consensus 327 l~~~~l~~~y~~-----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------- 377 (623)
++++||++.|++ ..+ ++||++.+| ++++|+||||||||||||++ |++.+.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDG-EFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 678999999974 234 999999999 99999999999999999999 665421
Q ss_pred hhhceeecCCCC---CCccH---------------------HHHHHHHcCCc--hhhhcccccccHHHH-HHHHHHHhcC
Q 006974 378 SKAGLYLPAKNH---PRLPW---------------------FDLILADIGDH--QSLEQNLSTFSGHIS-RIVDILELVS 430 (623)
Q Consensus 378 a~~G~~vp~~~~---~~l~~---------------------~d~i~~~ig~~--~~~~~~~stfS~g~~-rl~~~~~l~~ 430 (623)
.+...|+|+... ...++ ++.++..+|+. +..++.++.|||||+ |++++++++.
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~ 161 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM 161 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence 112357888631 11122 12346667876 567889999999999 8999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhH-HhhccccceeeCceEEEe
Q 006974 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (623)
Q Consensus 431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l-~~~~~~~~~i~~g~~~~~ 494 (623)
+|+++||||||+|||+.....+.. ++..+.+ .|.|+|++||+++. ..+|+++..+.+|++..+
T Consensus 162 ~P~llllDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~ 226 (287)
T PRK13637 162 EPKILILDEPTAGLDPKGRDEILN-KIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQ 226 (287)
T ss_pred CCCEEEEECCccCCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999 4555554 48899999999884 579999999999998765
No 93
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=9.3e-26 Score=229.03 Aligned_cols=167 Identities=20% Similarity=0.266 Sum_probs=135.2
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhce
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGL 382 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G~ 382 (623)
.++++||++.|++..+ ++||++.+| ++++|+||||||||||||++ |+..+. .+...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSG-EIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 3678999999987655 999999999 99999999999999999999 665421 11234
Q ss_pred eecCCCCC--CccH----------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974 383 YLPAKNHP--RLPW----------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (623)
Q Consensus 383 ~vp~~~~~--~l~~----------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLL 437 (623)
|+|+.... .+++ ++.++..+|+.+..++.+.+||+||+ |++++++++.+|+++||
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 161 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILL 161 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 67766411 1122 22345566777777888999999999 79999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 438 DEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
||||+|+|+.....+.. ++..+.+++.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 162 DEPt~~LD~~~~~~l~~-~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~ 218 (241)
T PRK10895 162 DEPFAGVDPISVIDIKR-IIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAH 218 (241)
T ss_pred cCCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEee
Confidence 99999999999999988 55566767889999999986 7789999999999998654
No 94
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.93 E-value=8e-26 Score=212.52 Aligned_cols=160 Identities=21% Similarity=0.306 Sum_probs=136.2
Q ss_pred EEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCC-----------------
Q 006974 327 MTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH----------------- 389 (623)
Q Consensus 327 l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~----------------- 389 (623)
+.+++|.++|+..+..+|+.++.| ++++|+||+||||||||+.| .|+..|+.|.
T Consensus 2 l~L~~V~~~y~~~~~~fdl~v~~g-e~vAi~GpSGaGKSTLLnLI--------AGF~~P~~G~i~i~g~d~t~~~P~~RP 72 (231)
T COG3840 2 LALDDVRFSYGHLPMRFDLTVPAG-EIVAILGPSGAGKSTLLNLI--------AGFETPASGEILINGVDHTASPPAERP 72 (231)
T ss_pred ccccceEEeeCcceEEEEEeecCC-cEEEEECCCCccHHHHHHHH--------HhccCCCCceEEEcCeecCcCCcccCC
Confidence 456789999998777899999999 99999999999999999999 5555555541
Q ss_pred -----------CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974 390 -----------PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (623)
Q Consensus 390 -----------~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL 436 (623)
+.+.+ ++.+..++|+.+..++.+.+||||++ |+++++.++.+..++|
T Consensus 73 VSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilL 152 (231)
T COG3840 73 VSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILL 152 (231)
T ss_pred hhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEE
Confidence 11111 44678899999999999999999999 8999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEec
Q 006974 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (623)
Q Consensus 437 LDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~~ 495 (623)
||||++.|||.-+......+..--.+++.|++++||..+ ...++++.+.+.+|++.+..
T Consensus 153 LDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g 212 (231)
T COG3840 153 LDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQG 212 (231)
T ss_pred ecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeec
Confidence 999999999999999988555444466889999999976 78899999999999998764
No 95
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.5e-25 Score=220.81 Aligned_cols=168 Identities=18% Similarity=0.185 Sum_probs=138.5
Q ss_pred cEEEceeeeecCCcc----c--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------h
Q 006974 326 EMTVGSLSKGISDFP----V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------S 378 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~----v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a 378 (623)
.++++|+++.|+... + ++||++.+| ++++|+|++|||||||.+++ |+..+. .
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~G-e~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERG-ETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCC-CEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 578999999998655 4 999999999 99999999999999999999 776531 1
Q ss_pred hhceeecCCCCCCccH-----------------------HHHHHHHcCCch-hhhcccccccHHHH-HHHHHHHhcCCCc
Q 006974 379 KAGLYLPAKNHPRLPW-----------------------FDLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRES 433 (623)
Q Consensus 379 ~~G~~vp~~~~~~l~~-----------------------~d~i~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~~~~ 433 (623)
+...+|+|++...+.+ ..+++..+|+.. .+++.+..||||++ |+++|++++.+|+
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pk 161 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPK 161 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCC
Confidence 2234667765433322 245677888765 56889999999999 8999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 434 LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
++|+||||+.||+.-.+.+...+.+.-++.+.|.||+|||.. +..+||++.++.+|+++..
T Consensus 162 lLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~ 223 (252)
T COG1124 162 LLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEI 223 (252)
T ss_pred EEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEe
Confidence 999999999999999999999555544456889999999998 5679999999999998755
No 96
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.93 E-value=9e-26 Score=242.84 Aligned_cols=168 Identities=20% Similarity=0.235 Sum_probs=136.7
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeec
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP 385 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp 385 (623)
.++++|++++|++..+ ++||++.+| ++++|+||||||||||||+| |+..+. .+...|+|
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~G-e~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~ 81 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEG-EFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF 81 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEe
Confidence 3789999999987655 999999999 99999999999999999999 776431 11234777
Q ss_pred CCCC--CCccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974 386 AKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (623)
Q Consensus 386 ~~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~ 441 (623)
++.. ..+++. +.++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||
T Consensus 82 Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPt 161 (369)
T PRK11000 82 QSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161 (369)
T ss_pred CCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 7641 112222 2345677888888999999999999 899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 442 ~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+|||+..+..+...+.+...+.+.|+|++||+.+ +..+||++..+.+|++...
T Consensus 162 s~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~ 215 (369)
T PRK11000 162 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV 215 (369)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999555443445889999999987 6679999999999998654
No 97
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.1e-25 Score=240.91 Aligned_cols=168 Identities=18% Similarity=0.210 Sum_probs=137.3
Q ss_pred cEEEceeeeec-CCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceee
Q 006974 326 EMTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYL 384 (623)
Q Consensus 326 ~l~~~~l~~~y-~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~v 384 (623)
.++++||++.| ++..+ ++||++.+| ++++|+||||||||||||+| |+..+. .+...|+
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~G-e~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 81 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADG-EFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMV 81 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCC-CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 47899999999 66555 899999999 99999999999999999999 765431 1123477
Q ss_pred cCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCC
Q 006974 385 PAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 440 (623)
Q Consensus 385 p~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp 440 (623)
|++.. ..+++ ++.++..+|+.+..++.+.+|||||+ |++++++++.+|+++|||||
T Consensus 82 ~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP 161 (356)
T PRK11650 82 FQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEP 161 (356)
T ss_pred eCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 77641 11222 23456677888889999999999999 89999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 441 ~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+++||+..+..+...+.+...+.+.|+|++|||.+ ...+||++..+.+|++...
T Consensus 162 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~ 216 (356)
T PRK11650 162 LSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQI 216 (356)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEE
Confidence 99999999999999555433445899999999986 6689999999999998654
No 98
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=9.4e-26 Score=228.45 Aligned_cols=167 Identities=20% Similarity=0.223 Sum_probs=132.8
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhce
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGL 382 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G~ 382 (623)
+++++||++.|++..+ ++||++.+| ++++|+||||||||||||++ |+..+. .+...
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 5 MLSFDKVSAHYGKIQALHEVSLHINQG-EIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred EEEEEeEEEeeCCceeeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 5789999999987655 999999999 99999999999999999999 665421 11234
Q ss_pred eecCCCCC--CccHHHH-------------------HHHHc-CCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeC
Q 006974 383 YLPAKNHP--RLPWFDL-------------------ILADI-GDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (623)
Q Consensus 383 ~vp~~~~~--~l~~~d~-------------------i~~~i-g~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDE 439 (623)
|+|+.... .+++.++ ++..+ ++.+..+..+++||+||+ |+.++++++.+|+++||||
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDE 163 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDE 163 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 66765421 1122222 23334 345556778999999999 8999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 440 p~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
||+|+|+.....+... +..+.+++.|+|++||+.+ +..+||+++.+.+|++...
T Consensus 164 Pt~~LD~~~~~~l~~~-l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (237)
T PRK11614 164 PSLGLAPIIIQQIFDT-IEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLE 218 (237)
T ss_pred ccccCCHHHHHHHHHH-HHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEee
Confidence 9999999999999994 5556666899999999987 7789999999999988654
No 99
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.2e-25 Score=233.98 Aligned_cols=166 Identities=16% Similarity=0.168 Sum_probs=135.3
Q ss_pred EEEceeeeecCCc------cc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------
Q 006974 327 MTVGSLSKGISDF------PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (623)
Q Consensus 327 l~~~~l~~~y~~~------~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------- 377 (623)
++++||++.|++. .+ ++||++.+| ++++|+||||||||||+|+| |++.+.
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~G-e~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQG-EFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 6889999999742 23 999999999 99999999999999999999 765421
Q ss_pred ----------------------hhhceeecCCCCCCc---cH---------------------HHHHHHHcCCc-hhhhc
Q 006974 378 ----------------------SKAGLYLPAKNHPRL---PW---------------------FDLILADIGDH-QSLEQ 410 (623)
Q Consensus 378 ----------------------a~~G~~vp~~~~~~l---~~---------------------~d~i~~~ig~~-~~~~~ 410 (623)
.+...|+|+.....+ .+ +..++..+|+. +..++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 011247777531111 11 23456677885 67899
Q ss_pred ccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeC
Q 006974 411 NLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (623)
Q Consensus 411 ~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~ 488 (623)
.+.+|||||+ |+++|++++.+|+++||||||+|||+.....+.. ++..+++.|.|+|++||+++ +..+||+++.+.+
T Consensus 162 ~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~ 240 (305)
T PRK13651 162 SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILE-IFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKD 240 (305)
T ss_pred ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEEC
Confidence 9999999999 7999999999999999999999999999999998 55667777899999999987 6789999999999
Q ss_pred ceEEEe
Q 006974 489 AATEFS 494 (623)
Q Consensus 489 g~~~~~ 494 (623)
|++..+
T Consensus 241 G~i~~~ 246 (305)
T PRK13651 241 GKIIKD 246 (305)
T ss_pred CEEEEE
Confidence 998765
No 100
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.4e-25 Score=232.20 Aligned_cols=166 Identities=20% Similarity=0.193 Sum_probs=134.1
Q ss_pred EEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhce
Q 006974 327 MTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGL 382 (623)
Q Consensus 327 l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G~ 382 (623)
++++||++.|+ +..+ ++||++.+| ++++|+||||||||||||++ |+..+. .+...
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKG-EYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 67899999995 3434 999999999 99999999999999999999 765421 11234
Q ss_pred eecCCCC---CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974 383 YLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (623)
Q Consensus 383 ~vp~~~~---~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLL 437 (623)
|+|+... ...++ +..++..+|+....++.+..||+||+ |+.++++++.+|+++||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 160 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIF 160 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 6776531 11122 12345667888888899999999999 79999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 438 DEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
||||+|||+.....+.. ++..+++.|.|+|++||+.+....|+++..+.+|++...
T Consensus 161 DEPt~gLD~~~~~~l~~-~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~ 216 (274)
T PRK13644 161 DEVTSMLDPDSGIAVLE-RIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLE 216 (274)
T ss_pred eCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEE
Confidence 99999999999999999 455566668999999999986577999999999998765
No 101
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.5e-25 Score=226.46 Aligned_cols=167 Identities=20% Similarity=0.233 Sum_probs=132.0
Q ss_pred cEEEceeeeecCC----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------
Q 006974 326 EMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (623)
Q Consensus 326 ~l~~~~l~~~y~~----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------- 377 (623)
+++++||++.|++ ..+ ++||++.+| ++++|+||||||||||||++ |+..+.
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEG-EMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 5789999999964 234 999999999 99999999999999999999 775420
Q ss_pred --hhhceeecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCC
Q 006974 378 --SKAGLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (623)
Q Consensus 378 --a~~G~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~ 431 (623)
.+...|+|+... ..++. +.+++..+|+.+..++.+.+||+||+ |++++++++.+
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~ 163 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNN 163 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 012347777641 11121 12345677887778889999999999 79999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
|+++||||||+|||+.....+.. ++..+++ .|.|+|++||+.+....+++++.+.+|++...
T Consensus 164 p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~ 226 (233)
T PRK11629 164 PRLVLADEPTGNLDARNADSIFQ-LLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAE 226 (233)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEE
Confidence 99999999999999999999999 4555554 58899999999985555567788888887643
No 102
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.5e-25 Score=229.62 Aligned_cols=167 Identities=17% Similarity=0.219 Sum_probs=134.9
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhcee
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY 383 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~~ 383 (623)
+++++|++++|++..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+...|
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTG-KITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCC-cEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 3678999999987665 999999999 99999999999999999999 765421 112346
Q ss_pred ecCCCCC--CccH-------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974 384 LPAKNHP--RLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (623)
Q Consensus 384 vp~~~~~--~l~~-------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll 435 (623)
+|+.... .++. +..++..+|+....++.+++||+||+ |++++++++.+|+++
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 160 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVV 160 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 7775421 1111 12234556777777899999999999 899999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 436 LLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
||||||+|+|+.....+...+ ..+.+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 161 llDEP~~~LD~~~~~~l~~~l-~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 219 (255)
T PRK11231 161 LLDEPTTYLDINHQVELMRLM-RELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQ 219 (255)
T ss_pred EEcCCcccCCHHHHHHHHHHH-HHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEE
Confidence 999999999999999999954 456666889999999988 5789999999999988654
No 103
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.93 E-value=2.4e-25 Score=228.26 Aligned_cols=168 Identities=18% Similarity=0.191 Sum_probs=135.1
Q ss_pred CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------------
Q 006974 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------ 377 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------------ 377 (623)
+.++++||++.|++..+ +++|++.+| ++++|+||||+||||||+++ |++.+.
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 4 NKLNVIDLHKRYGEHEVLKGVSLQANAG-DVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred ccEEEeeeEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence 46899999999987655 999999999 99999999999999999999 665421
Q ss_pred --------hhhceeecCCCCC--CccHHH----------------------HHHHHcCCchhh-hcccccccHHHH-HHH
Q 006974 378 --------SKAGLYLPAKNHP--RLPWFD----------------------LILADIGDHQSL-EQNLSTFSGHIS-RIV 423 (623)
Q Consensus 378 --------a~~G~~vp~~~~~--~l~~~d----------------------~i~~~ig~~~~~-~~~~stfS~g~~-rl~ 423 (623)
.+.-.|+|+.... .++..+ .++..+|+.... ++.+++||+||+ |++
T Consensus 83 ~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~ 162 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVS 162 (257)
T ss_pred cchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence 0112466765421 112222 234566776654 788999999999 899
Q ss_pred HHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 424 ~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
++++++.+|+++||||||+|||+.....+.. ++..+.+.|.++|++||+.+ +..+|+++..+.+|++...
T Consensus 163 laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 233 (257)
T PRK10619 163 IARALAMEPEVLLFDEPTSALDPELVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 233 (257)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999 55566667899999999988 5568999999999988754
No 104
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.93 E-value=6.9e-26 Score=227.72 Aligned_cols=165 Identities=18% Similarity=0.223 Sum_probs=128.0
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhh----hce--eecCCC---CCCccH
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK----AGL--YLPAKN---HPRLPW 394 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~----~G~--~vp~~~---~~~l~~ 394 (623)
+.++++++.|++..+ ++||++.+| ++++|+||||||||||+|++ |++.+..- .|. +.+... ...+++
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv 101 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRG-ERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTG 101 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcH
Confidence 567889999998776 999999999 99999999999999999999 66543210 000 000000 001111
Q ss_pred ---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHH
Q 006974 395 ---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVAL 452 (623)
Q Consensus 395 ---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l 452 (623)
+..++..+|+.+..++.++.||+|++ |++++++++.+|+++||||||+|||+.....+
T Consensus 102 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~ 181 (224)
T cd03220 102 RENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKC 181 (224)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 12344556777778889999999999 79999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974 453 ATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (623)
Q Consensus 453 ~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~ 493 (623)
...+.+ +.+.+.|+|++||+.+ +..+|+++..+.+|++..
T Consensus 182 ~~~l~~-~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 222 (224)
T cd03220 182 QRRLRE-LLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF 222 (224)
T ss_pred HHHHHH-HHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 995554 5555789999999987 567899999999998754
No 105
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.93 E-value=1.8e-25 Score=224.74 Aligned_cols=166 Identities=17% Similarity=0.171 Sum_probs=130.2
Q ss_pred EEEceeeeecCCc----cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------
Q 006974 327 MTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------- 377 (623)
Q Consensus 327 l~~~~l~~~y~~~----~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------- 377 (623)
++++||++.|++. .+ ++||++.+| ++++|+|||||||||||+++ |+..+.
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKG-ETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 6789999999764 44 999999999 99999999999999999999 665421
Q ss_pred hhhceeecCCCC----CCccHHH-----------------------HHHHHcCCc-hhhhcccccccHHHH-HHHHHHHh
Q 006974 378 SKAGLYLPAKNH----PRLPWFD-----------------------LILADIGDH-QSLEQNLSTFSGHIS-RIVDILEL 428 (623)
Q Consensus 378 a~~G~~vp~~~~----~~l~~~d-----------------------~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l 428 (623)
.+...|+|+... ..+++.+ .++..+++. ...++.+.+||+||+ |+++++++
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 012346676641 0112111 234556764 467888999999999 79999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (623)
Q Consensus 429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~ 493 (623)
+.+|+++||||||+|||+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|++..
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 99999999999999999999999999555443334789999999988 456899999999998753
No 106
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.93 E-value=1.3e-25 Score=226.24 Aligned_cols=166 Identities=25% Similarity=0.261 Sum_probs=131.1
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhcee
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLY 383 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G~~ 383 (623)
++++||++.|++..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+...|
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKG-EVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 367899999987655 999999999 99999999999999999999 776431 112347
Q ss_pred ecCCCCC--CccHH------------------HHHHHHcC-CchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974 384 LPAKNHP--RLPWF------------------DLILADIG-DHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (623)
Q Consensus 384 vp~~~~~--~l~~~------------------d~i~~~ig-~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~ 441 (623)
+|+.... .+++. +.++..++ ..+..++.+++||+||+ |++++++++.+|+++||||||
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt 159 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 7776421 11222 22333443 35567889999999999 899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 442 SGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 442 ~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+|||+.....+...+. .+.+ .+.|+|++||+.+ +..+|+++..+.+|++...
T Consensus 160 ~~LD~~~~~~l~~~l~-~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~ 213 (230)
T TIGR03410 160 EGIQPSIIKDIGRVIR-RLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVAS 213 (230)
T ss_pred ccCCHHHHHHHHHHHH-HHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999555 4554 4789999999988 5568999999999988654
No 107
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.8e-25 Score=225.68 Aligned_cols=166 Identities=16% Similarity=0.162 Sum_probs=134.3
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------------h
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------------S 378 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------------a 378 (623)
++++|+++.|++..+ ++||++.+| ++++|+||||||||||||++ |+..+- .
T Consensus 3 l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 3 IQLNGINCFYGAHQALFDITLDCPQG-ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEeeEEEECCeeeEeeeeeEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 678999999987655 999999999 99999999999999999999 665321 0
Q ss_pred hhceeecCCCCC--CccHH----------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCc
Q 006974 379 KAGLYLPAKNHP--RLPWF----------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES 433 (623)
Q Consensus 379 ~~G~~vp~~~~~--~l~~~----------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~ 433 (623)
+...|+|+.... .+++. ..++..+|+...+++.+..||+||+ |++++++++.+|+
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ 161 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQ 161 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 123467765421 11222 2234566777778889999999999 7999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 434 LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
++||||||+|+|+.....+.. ++..+.+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 162 llilDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~ 222 (242)
T PRK11124 162 VLLFDEPTAALDPEITAQIVS-IIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred EEEEcCCCCcCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 999999999999999999999 55566666889999999988 4578999999999998754
No 108
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.5e-25 Score=227.63 Aligned_cols=166 Identities=20% Similarity=0.216 Sum_probs=132.5
Q ss_pred EEEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhcee
Q 006974 327 MTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY 383 (623)
Q Consensus 327 l~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~~ 383 (623)
++++||+++|++ ..+ ++||++.+| ++++|+||||||||||||++ |+..+. .....|
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKG-EFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 357899999987 554 999999999 99999999999999999999 665421 112246
Q ss_pred ecCCCCC--CccH---------------------HHHHHHHcCCch--hhhcccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974 384 LPAKNHP--RLPW---------------------FDLILADIGDHQ--SLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (623)
Q Consensus 384 vp~~~~~--~l~~---------------------~d~i~~~ig~~~--~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLL 437 (623)
+|+.... .+++ +..++..+|+.. ..++.+++||+||+ |++++++++.+|+++||
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 159 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLM 159 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 7776411 1122 123456677764 67889999999999 79999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 438 DEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 438 DEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
||||+|+|+.....+... +..+.+ .+.++|++||+.+ +..+|+++..+.+|++...
T Consensus 160 DEPt~~LD~~~~~~l~~~-L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 217 (242)
T cd03295 160 DEPFGALDPITRDQLQEE-FKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQV 217 (242)
T ss_pred cCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999994 445554 4889999999987 6789999999999998654
No 109
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.93 E-value=1.9e-25 Score=229.26 Aligned_cols=167 Identities=19% Similarity=0.197 Sum_probs=134.5
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhcee
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY 383 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~~ 383 (623)
+++++||++.|++..+ ++||++.+| ++++|+|||||||||||++| |+..+. .+...|
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPG-EVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 4788999999987655 999999999 99999999999999999999 775431 112346
Q ss_pred ecCCCCC--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhc------CCCc
Q 006974 384 LPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV------SRES 433 (623)
Q Consensus 384 vp~~~~~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~------~~~~ 433 (623)
+|+.... .+++ +..++..+|+.+..++.+.+||+||+ |++++++++ .+|+
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~ 160 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPR 160 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCC
Confidence 7765421 1122 22345667777778899999999999 799999998 5999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 434 LVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 434 LlLLDEp~~glD~~~~~~l~~all~~l~-~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
++||||||+|||+.....+...+.+ +. +.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 161 lllLDEPt~~LD~~~~~~l~~~l~~-~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 222 (258)
T PRK13548 161 WLLLDEPTSALDLAHQHHVLRLARQ-LAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVAD 222 (258)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHH-HHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEee
Confidence 9999999999999999999995554 55 66889999999988 5579999999999988654
No 110
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.6e-25 Score=222.75 Aligned_cols=163 Identities=21% Similarity=0.327 Sum_probs=130.9
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhhceeec
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP 385 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~G~~vp 385 (623)
++++|+++.|++..+ ++||++.+| +++|+||||||||||||++ |++.+. .+...|+|
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG--MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC--cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence 367899999987655 999999997 8999999999999999999 765421 12234677
Q ss_pred CCCCC--CccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974 386 AKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (623)
Q Consensus 386 ~~~~~--~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~ 441 (623)
+.... .+++. +.++..+|+.+..++.+.+||+||+ |++++++++.+|+++||||||
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 158 (211)
T cd03264 79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPT 158 (211)
T ss_pred CCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 76421 11221 2345567777778889999999999 899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (623)
Q Consensus 442 ~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~ 493 (623)
+|+|+.....+.. ++..+++ +.|+|++||+.+ +..+|++++.+.+|++..
T Consensus 159 ~~LD~~~~~~l~~-~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~ 209 (211)
T cd03264 159 AGLDPEERIRFRN-LLSELGE-DRIVILSTHIVEDVESLCNQVAVLNKGKLVF 209 (211)
T ss_pred ccCCHHHHHHHHH-HHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999998 5556665 489999999988 457899999999998753
No 111
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.93 E-value=3.3e-25 Score=225.06 Aligned_cols=166 Identities=22% Similarity=0.205 Sum_probs=133.0
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------h-hhce
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------S-KAGL 382 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a-~~G~ 382 (623)
.++++|+++.|++..+ ++||++.+| ++++|+||||+|||||||++ |+..+. . +.-.
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPG-ELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 4688999999987655 999999999 99999999999999999999 665421 0 1123
Q ss_pred eecCCCC--CCccH-----------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcC
Q 006974 383 YLPAKNH--PRLPW-----------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS 430 (623)
Q Consensus 383 ~vp~~~~--~~l~~-----------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~ 430 (623)
|+|+... ..+++ +..++..+|+.+..++.+++||+||+ |+.++++++.
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~ 160 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQ 160 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 5666531 01111 12345667777778899999999999 8999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+|+++||||||+|||+.....+... +..+.+ +.|+|++||+.+ +..+|+++..+.+|++...
T Consensus 161 ~p~~lllDEPt~~LD~~~~~~l~~~-l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~ 223 (242)
T TIGR03411 161 DPKLLLLDEPVAGMTDEETEKTAEL-LKSLAG-KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAE 223 (242)
T ss_pred CCCEEEecCCccCCCHHHHHHHHHH-HHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCeEEee
Confidence 9999999999999999999999994 445555 689999999988 5579999999999998754
No 112
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.93 E-value=1.4e-25 Score=239.82 Aligned_cols=168 Identities=21% Similarity=0.240 Sum_probs=138.9
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeec
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP 385 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp 385 (623)
.++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...|+|
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~ 82 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDISLSVKKG-EFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVF 82 (353)
T ss_pred EEEEEEEEEEeCCeEEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 4789999999988665 899999999 99999999999999999999 776431 12235777
Q ss_pred CCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974 386 AKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (623)
Q Consensus 386 ~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~ 441 (623)
++.. ..+++ ++.++..+|+.+..++.+.+|||||+ |++++++++.+|+++|||||+
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~ 162 (353)
T TIGR03265 83 QSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPL 162 (353)
T ss_pred CCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 7641 11222 23456677888888999999999999 899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 442 ~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
++||+..+..+...+.+...+.+.|+|++||+.+ ...+||++..+.+|++...
T Consensus 163 s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~ 216 (353)
T TIGR03265 163 SALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQV 216 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999665544455899999999987 5689999999999998754
No 113
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.5e-25 Score=226.07 Aligned_cols=166 Identities=17% Similarity=0.202 Sum_probs=133.8
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhcee
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY 383 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~~ 383 (623)
.++++|+++.|++..+ ++||++.+| ++++|+||||||||||+|++ |+..+. .+...|
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGG-AIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 4789999999987655 999999999 99999999999999999999 665421 112346
Q ss_pred ecCCCCCCc--cH-----------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCC
Q 006974 384 LPAKNHPRL--PW-----------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (623)
Q Consensus 384 vp~~~~~~l--~~-----------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~ 442 (623)
+|+... .+ ++ ...++..+|+. +..++.+..||+||+ |++++++++.+|+++||||||+
T Consensus 82 ~~q~~~-~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 160 (241)
T PRK14250 82 VFQQPH-LFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTS 160 (241)
T ss_pred EecCch-hchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 677631 11 11 23456677885 467889999999999 7999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 443 GTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 443 glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|||+.....+... +..+.+ .|.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 161 ~LD~~~~~~l~~~-l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 213 (241)
T PRK14250 161 ALDPTSTEIIEEL-IVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEY 213 (241)
T ss_pred cCCHHHHHHHHHH-HHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence 9999999999984 445554 4889999999988 5679999999999988654
No 114
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.1e-25 Score=232.46 Aligned_cols=166 Identities=15% Similarity=0.122 Sum_probs=134.1
Q ss_pred EEEceeeeecCC-----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------
Q 006974 327 MTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (623)
Q Consensus 327 l~~~~l~~~y~~-----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------- 377 (623)
++++||++.|++ +.+ ++||++.+| ++++|+||||||||||||+| |++.+.
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~G-e~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEG-SFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 678999999974 234 999999999 99999999999999999999 665421
Q ss_pred --hhhceeecCCCC---CCccHH---------------------HHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhc
Q 006974 378 --SKAGLYLPAKNH---PRLPWF---------------------DLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELV 429 (623)
Q Consensus 378 --a~~G~~vp~~~~---~~l~~~---------------------d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~ 429 (623)
.+...|+|+... ...++. ..++..+|+. +..++.+++||+||+ |++++++++
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~ 161 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMA 161 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 012347777631 111222 2345567776 567899999999999 799999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
.+|+++||||||+|||+.....+.. ++..+.+.|.|+|++||+++ +..+||+++.+.+|++...
T Consensus 162 ~~p~lLlLDEPt~gLD~~~~~~l~~-~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~ 226 (287)
T PRK13641 162 YEPEILCLDEPAAGLDPEGRKEMMQ-LFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKH 226 (287)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999998 55666666889999999988 5689999999999998754
No 115
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.1e-25 Score=231.46 Aligned_cols=166 Identities=16% Similarity=0.149 Sum_probs=133.6
Q ss_pred EEEceeeeecCC-----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------
Q 006974 327 MTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (623)
Q Consensus 327 l~~~~l~~~y~~-----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------- 377 (623)
++++||+++|++ ..+ ++||++.+| ++++|+||||||||||+|++ |++.+.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSG-SYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 678999999974 234 999999999 99999999999999999999 665421
Q ss_pred --hhhceeecCCCCC---CccH---------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhc
Q 006974 378 --SKAGLYLPAKNHP---RLPW---------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELV 429 (623)
Q Consensus 378 --a~~G~~vp~~~~~---~l~~---------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~ 429 (623)
.+...|+|+.... ..++ ++.++..+|+. +..++.+++||+||+ |++++++++
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~ 161 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA 161 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 0123477776311 1111 22345677886 556889999999999 899999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
.+|+++||||||+|||+.....+... +..+.+ .|.|||++||+.+ +..+||++..+.+|++..+
T Consensus 162 ~~P~llllDEPt~~LD~~~~~~l~~~-L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~ 227 (290)
T PRK13634 162 MEPEVLVLDEPTAGLDPKGRKEMMEM-FYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQ 227 (290)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999994 555654 5889999999988 5679999999999998765
No 116
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.93 E-value=3.8e-25 Score=225.42 Aligned_cols=165 Identities=19% Similarity=0.260 Sum_probs=131.7
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----h--------------------
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----S-------------------- 378 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----a-------------------- 378 (623)
++++||+++|++..+ ++||++.+| ++++|+||||||||||||++ |+..+. +
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 2 IEIENLNLFYGEKEALKNINLDIPKN-QVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred EEEEEEEEEECCeeeecceeEEECCC-CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 678999999987555 999999999 99999999999999999999 776432 1
Q ss_pred -hhceeecCCCCC-CccHHH----------------------HHHHHcCCc----hhhhcccccccHHHH-HHHHHHHhc
Q 006974 379 -KAGLYLPAKNHP-RLPWFD----------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDILELV 429 (623)
Q Consensus 379 -~~G~~vp~~~~~-~l~~~d----------------------~i~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~l~ 429 (623)
+...|+|+.... ..+..+ .++..+|+. +..++.+.+||+||+ |++++++++
T Consensus 81 ~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 160 (247)
T TIGR00972 81 RRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALA 160 (247)
T ss_pred HhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 112466665310 012222 234455666 667888999999999 899999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
.+|+++||||||+|||+.....+.. ++..+.+ +.|+|++||+.+ +..+|+++..+.+|++...
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 224 (247)
T TIGR00972 161 VEPEVLLLDEPTSALDPIATGKIEE-LIQELKK-KYTIVIVTHNMQQAARISDRTAFFYDGELVEY 224 (247)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHh-cCeEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999 4555555 389999999988 6689999999999998654
No 117
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.93 E-value=4.1e-25 Score=227.17 Aligned_cols=167 Identities=20% Similarity=0.260 Sum_probs=135.6
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------------------------
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------------------------ 378 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------------------------ 378 (623)
+++++||++.|++..+ ++||++.+| ++++|+||||||||||+++| |+..+..
T Consensus 4 ~l~~~nl~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHG-EMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred EEEEeeEEEEeCCeEEEecceEEEcCC-cEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence 5789999999987665 999999999 99999999999999999999 7764320
Q ss_pred ---hhceeecCCCC--CCccH-----------------------------HHHHHHHcCCchhhhcccccccHHHH-HHH
Q 006974 379 ---KAGLYLPAKNH--PRLPW-----------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIV 423 (623)
Q Consensus 379 ---~~G~~vp~~~~--~~l~~-----------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~ 423 (623)
+...|+|+... ..+++ +..++..+|+.+..++.+.+||+||+ |++
T Consensus 83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 162 (262)
T PRK09984 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVA 162 (262)
T ss_pred HHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHH
Confidence 11246776531 11111 12345567777778899999999999 899
Q ss_pred HHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 424 ~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~-~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
++++++.+|++|||||||+|||+.....+...+. .+. +.|.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus 163 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~ 234 (262)
T PRK09984 163 IARALMQQAKVILADEPIASLDPESARIVMDTLR-DINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYD 234 (262)
T ss_pred HHHHHhcCCCEEEecCccccCCHHHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999544 455 45789999999998 5789999999999988654
No 118
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.93 E-value=2.4e-25 Score=221.90 Aligned_cols=166 Identities=18% Similarity=0.225 Sum_probs=132.7
Q ss_pred EEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeecCCCC
Q 006974 328 TVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAKNH 389 (623)
Q Consensus 328 ~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp~~~~ 389 (623)
+++||+++|+....++||++.+| ++++|+||||||||||+|++ |++.+. .+...|+|+...
T Consensus 2 ~~~~l~~~~~~~~~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~ 80 (213)
T TIGR01277 2 ALDKVRYEYEHLPMEFDLNVADG-EIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENN 80 (213)
T ss_pred eEEeeeEEeCCcceeeEEEEeCC-cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCc
Confidence 57899999986445999999999 99999999999999999999 766431 112346777641
Q ss_pred C--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCC
Q 006974 390 P--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 445 (623)
Q Consensus 390 ~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD 445 (623)
. .+++ +..++..+|+.+..++.+.+||+||+ |++++++++.+|+++||||||+|+|
T Consensus 81 ~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD 160 (213)
T TIGR01277 81 LFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALD 160 (213)
T ss_pred cCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 1 1111 12345667777778899999999999 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 446 PSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 446 ~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~ 210 (213)
T TIGR01277 161 PLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVV 210 (213)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEe
Confidence 999999999555433344789999999988 5678999999999987654
No 119
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.5e-25 Score=230.99 Aligned_cols=167 Identities=19% Similarity=0.201 Sum_probs=135.0
Q ss_pred cEEEceeeeecCC---ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh
Q 006974 326 EMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 380 (623)
Q Consensus 326 ~l~~~~l~~~y~~---~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~ 380 (623)
.++++||++.|++ ..+ ++||++.+| ++++|+||||||||||+|++ |++.+. .+.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQG-EWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence 4789999999963 223 999999999 99999999999999999999 765421 112
Q ss_pred ceeecCCCC---CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974 381 GLYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (623)
Q Consensus 381 G~~vp~~~~---~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll 435 (623)
..|+|+... ...++ ++.++..+|+.+..++.+.+||+||+ |++++++++.+|+++
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lL 162 (279)
T PRK13650 83 IGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKII 162 (279)
T ss_pred ceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 347777531 11121 23456677888888999999999998 899999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 436 LIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 436 LLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
||||||+|||+.....+.. ++..+.+ .|.|+|++||+.+....|++++.+.+|++..+
T Consensus 163 lLDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~ 221 (279)
T PRK13650 163 ILDEATSMLDPEGRLELIK-TIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVEST 221 (279)
T ss_pred EEECCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999998 4555554 48899999999885578999999999998765
No 120
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.6e-25 Score=229.10 Aligned_cols=168 Identities=15% Similarity=0.176 Sum_probs=135.4
Q ss_pred CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhce
Q 006974 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 382 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~ 382 (623)
.+++++||++.|++..+ ++||++.+| ++++|+||||||||||+|++ |+..+. .+...
T Consensus 10 ~~l~i~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 10 TTFALRNVSFRVPGRTLLHPLSLTFPAG-KVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred ceEEEeeEEEEECCEEEEeeeeeEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 36899999999987655 999999999 99999999999999999999 775421 11234
Q ss_pred eecCCCC--CCccH-------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcE
Q 006974 383 YLPAKNH--PRLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (623)
Q Consensus 383 ~vp~~~~--~~l~~-------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~L 434 (623)
|+|+... ..+++ ++.++..+|+.+.+++.+.+|||||+ |++++++++.+|++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 168 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRC 168 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 6776531 11111 22345667777778889999999999 89999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 435 VLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 435 lLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+||||||+|||+.....+... +..+.+ .+.++|++||+.+ +..+|++++.+.+|++...
T Consensus 169 llLDEPt~~LD~~~~~~~~~~-l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~ 229 (265)
T PRK10575 169 LLLDEPTSALDIAHQVDVLAL-VHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQ 229 (265)
T ss_pred EEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEe
Confidence 999999999999999999994 445554 4889999999988 5689999999999998644
No 121
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.1e-25 Score=238.09 Aligned_cols=169 Identities=15% Similarity=0.158 Sum_probs=137.7
Q ss_pred CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-----------------hhceee
Q 006974 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-----------------KAGLYL 384 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-----------------~~G~~v 384 (623)
..++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+-+ +...|+
T Consensus 5 ~~l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 5 NFVVLKNITKRFGSNTVIDNLNLTIKQG-TMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred cEEEEEeEEEEECCeEEEeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 36889999999987664 899999999 99999999999999999999 7765321 122467
Q ss_pred cCCCC--CCccHHH---------------------HHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCC
Q 006974 385 PAKNH--PRLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 440 (623)
Q Consensus 385 p~~~~--~~l~~~d---------------------~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp 440 (623)
|++.. ..+++.+ .++..+|+.+..++.+++|||||+ |++++++++.+|+++|||||
T Consensus 84 fQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP 163 (351)
T PRK11432 84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEP 163 (351)
T ss_pred eCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 77641 1222222 345667787788899999999999 89999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 441 ~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
++|||+..+..+...+.+...+.+.|+|++|||.+ ...+||++..+.+|++...
T Consensus 164 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~ 218 (351)
T PRK11432 164 LSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQI 218 (351)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999555443445889999999987 5689999999999998754
No 122
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.93 E-value=1.6e-25 Score=234.09 Aligned_cols=167 Identities=19% Similarity=0.262 Sum_probs=138.3
Q ss_pred cEEEceeeeecCCc-cc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeec
Q 006974 326 EMTVGSLSKGISDF-PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP 385 (623)
Q Consensus 326 ~l~~~~l~~~y~~~-~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp 385 (623)
.++++||+|.||+. .+ ++|+++..| ++++|+||||||||||||+| ||..+- .+...+|+
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~G-ef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF 81 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDG-EFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF 81 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence 47899999999987 56 999999999 99999999999999999999 776542 12234677
Q ss_pred CCC--CCCccHHHH---------------------HHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974 386 AKN--HPRLPWFDL---------------------ILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (623)
Q Consensus 386 ~~~--~~~l~~~d~---------------------i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~ 441 (623)
|+. ++.++++++ +...+++.+.+++.++.||||++ |++++++++.+|+++|||||.
T Consensus 82 Q~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPl 161 (338)
T COG3839 82 QNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPL 161 (338)
T ss_pred CCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCch
Confidence 764 234444443 35567889999999999999999 899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (623)
Q Consensus 442 ~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~ 493 (623)
++||..-+..+..-+.+...+.+.|+|.+|||.. ...++|++.++.+|.+.-
T Consensus 162 SnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 162 SNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred hHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeee
Confidence 9999999999988555533445889999999964 667999999999888753
No 123
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.6e-25 Score=231.89 Aligned_cols=167 Identities=17% Similarity=0.145 Sum_probs=134.3
Q ss_pred cEEEceeeeecCCc-----cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------
Q 006974 326 EMTVGSLSKGISDF-----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------- 377 (623)
Q Consensus 326 ~l~~~~l~~~y~~~-----~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------- 377 (623)
+++++||++.|+.. .+ ++||++.+| ++++|+||||||||||+|++ |++.+.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~G-e~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 79 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKG-SYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEI 79 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCC-CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccH
Confidence 36789999999632 23 999999999 99999999999999999999 765431
Q ss_pred ---hhhceeecCCCC---CCccH---------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHh
Q 006974 378 ---SKAGLYLPAKNH---PRLPW---------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILEL 428 (623)
Q Consensus 378 ---a~~G~~vp~~~~---~~l~~---------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l 428 (623)
.+...|+|+... ...++ +..++..+|+. +..++.+.+||+||+ |+++++++
T Consensus 80 ~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL 159 (288)
T PRK13643 80 KPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL 159 (288)
T ss_pred HHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence 112347777531 01111 22345666775 466899999999999 79999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+.+|+++||||||+|||+..+..+.. ++..+++.|.|+|++||+++ +..+|+++..+.+|++.++
T Consensus 160 ~~~p~illLDEPt~gLD~~~~~~l~~-~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~ 225 (288)
T PRK13643 160 AMEPEVLVLDEPTAGLDPKARIEMMQ-LFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISC 225 (288)
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999998 56667767889999999988 5579999999999999865
No 124
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.93 E-value=4.5e-25 Score=225.56 Aligned_cols=167 Identities=17% Similarity=0.175 Sum_probs=132.8
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------------
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------------- 377 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------------- 377 (623)
++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+-
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAG-EKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 367899999987555 999999999 99999999999999999999 665421
Q ss_pred ------hhhceeecCCCCC--CccH----------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHH
Q 006974 378 ------SKAGLYLPAKNHP--RLPW----------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDIL 426 (623)
Q Consensus 378 ------a~~G~~vp~~~~~--~l~~----------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~ 426 (623)
.+...|+|+.... ..++ +..++..+|+.+..++.+++||+|++ |+++++
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar 159 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIAR 159 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHH
Confidence 1123466665311 1111 12345566777778889999999999 899999
Q ss_pred HhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 427 ~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+++.+|+++||||||+|||+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T TIGR03005 160 ALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQ 228 (252)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999555443344889999999988 5579999999999998654
No 125
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.3e-25 Score=230.04 Aligned_cols=167 Identities=19% Similarity=0.156 Sum_probs=135.3
Q ss_pred cEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhc
Q 006974 326 EMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 381 (623)
Q Consensus 326 ~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G 381 (623)
.++++||++.|++ ..+ ++||++.+| ++++|+||||+||||||++| |++.+. .+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEG-EWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 5789999999974 334 999999999 99999999999999999999 665431 1123
Q ss_pred eeecCCCC---CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974 382 LYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (623)
Q Consensus 382 ~~vp~~~~---~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL 436 (623)
.|+|+... ...++ ++.++..+|+.+.+++.+.+||+||+ |+.++++++.+|++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 163 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIII 163 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 46776531 11122 23456667888889999999999999 8999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 437 IDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 437 LDEp~~glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
|||||+|||+.....+.. ++..+.+. +.|+|++||+++....|+++..+.+|++..+
T Consensus 164 LDEPt~gLD~~~~~~l~~-~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~ 221 (279)
T PRK13635 164 LDEATSMLDPRGRREVLE-TVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEE 221 (279)
T ss_pred EeCCcccCCHHHHHHHHH-HHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 999999999999999999 45556654 8899999999886567999999999998765
No 126
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.93 E-value=1.4e-24 Score=241.10 Aligned_cols=165 Identities=21% Similarity=0.229 Sum_probs=129.5
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--------hhceeecCCCCCC--c
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNHPR--L 392 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--------~~G~~vp~~~~~~--l 392 (623)
.+.+.|++++||++.+ ++++++.+| +.++|+|+||+|||||||+| |...+.. ....|++|..... .
T Consensus 3 ~i~~~~ls~~~g~~~l~~~~~l~~~~G-~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~ 81 (530)
T COG0488 3 MITLENLSLAYGDRPLLENVSLTLNPG-ERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEK 81 (530)
T ss_pred eEEEeeeEEeeCCceeecCCcceeCCC-CEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCc
Confidence 5789999999998887 999999999 99999999999999999999 5543321 0123566654211 1
Q ss_pred cHHH---------------------------------------------------HHHHHcCCchhhhcccccccHHHH-
Q 006974 393 PWFD---------------------------------------------------LILADIGDHQSLEQNLSTFSGHIS- 420 (623)
Q Consensus 393 ~~~d---------------------------------------------------~i~~~ig~~~~~~~~~stfS~g~~- 420 (623)
++++ .++..+|..+. ++++++||||++
T Consensus 82 tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~ 160 (530)
T COG0488 82 TVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRR 160 (530)
T ss_pred cHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHH
Confidence 1111 22334455555 889999999999
Q ss_pred HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEecC
Q 006974 421 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSLE 496 (623)
Q Consensus 421 rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~~~ 496 (623)
|+++|.++..+|++|||||||||||......|.. +|.+..+|+|+||||.+ +..+|++++.+.+|.+..+.+
T Consensus 161 Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~----~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~G 233 (530)
T COG0488 161 RVALARALLEEPDLLLLDEPTNHLDLESIEWLED----YLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKG 233 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHH----HHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecC
Confidence 8999999999999999999999999987766655 55555569999999998 778999999999998776654
No 127
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=4.8e-25 Score=219.86 Aligned_cols=160 Identities=21% Similarity=0.252 Sum_probs=128.8
Q ss_pred eeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------------hhhceeecC
Q 006974 331 SLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGLYLPA 386 (623)
Q Consensus 331 ~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------------a~~G~~vp~ 386 (623)
||+|+|++..+++||++.+ ++++|+|||||||||||+++ |++.+. .+...|+|+
T Consensus 5 ~l~~~~~~~~~~vsl~i~~--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q 82 (214)
T cd03297 5 DIEKRLPDFTLKIDFDLNE--EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQ 82 (214)
T ss_pred eeeEecCCeeeCceEEEcc--eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEec
Confidence 8999999877799999987 79999999999999999999 765421 012346676
Q ss_pred CCCC--CccH-------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCC
Q 006974 387 KNHP--RLPW-------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (623)
Q Consensus 387 ~~~~--~l~~-------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~gl 444 (623)
.... .+++ +..++..+|+....++.+++||+||+ |+.++++++.+|+++||||||+||
T Consensus 83 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 83 QYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred CCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 5421 1121 22345677777778899999999999 899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974 445 DPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (623)
Q Consensus 445 D~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~ 493 (623)
|+.....+...+. .+.+ .+.|+|++||+.+ +..+|+++..+.+|++..
T Consensus 163 D~~~~~~l~~~l~-~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 163 DRALRLQLLPELK-QIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred CHHHHHHHHHHHH-HHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 9999999999544 4554 4789999999987 567999999999998754
No 128
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.5e-25 Score=228.17 Aligned_cols=168 Identities=17% Similarity=0.187 Sum_probs=136.5
Q ss_pred CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhce
Q 006974 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 382 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~ 382 (623)
.++.++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |+..+. .+...
T Consensus 6 ~~l~i~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (265)
T PRK10253 6 ARLRGEQLTLGYGKYTVAENLTVEIPDG-HFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84 (265)
T ss_pred cEEEEEEEEEEECCEEEeeecceEECCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 46899999999987655 999999999 99999999999999999999 765421 11234
Q ss_pred eecCCCCC--CccH-------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcE
Q 006974 383 YLPAKNHP--RLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (623)
Q Consensus 383 ~vp~~~~~--~l~~-------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~L 434 (623)
|+|+.... ...+ ++.++..+|+.+..++.+++||+||+ |+.++++++.+|++
T Consensus 85 ~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~l 164 (265)
T PRK10253 85 LLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAI 164 (265)
T ss_pred EeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCE
Confidence 67765311 0111 22345566777778899999999999 89999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 435 VLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 435 lLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+||||||+|||+.....+...+. .+.+ .+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 165 lllDEPt~gLD~~~~~~l~~~L~-~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 225 (265)
T PRK10253 165 MLLDEPTTWLDISHQIDLLELLS-ELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQ 225 (265)
T ss_pred EEEeCccccCCHHHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999554 4554 4789999999987 6789999999999998754
No 129
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.5e-25 Score=230.20 Aligned_cols=169 Identities=12% Similarity=0.100 Sum_probs=133.1
Q ss_pred CcEEEceeeeecCCc-----cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------
Q 006974 325 SEMTVGSLSKGISDF-----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------- 377 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~-----~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------- 377 (623)
+.++++||++.|++. .+ ++||++.+| ++++|+||||||||||||++ |++.+.
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKN-KVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 468999999999763 24 999999999 99999999999999999999 665421
Q ss_pred -----hhhceeecCCCCC---CccH---------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHH
Q 006974 378 -----SKAGLYLPAKNHP---RLPW---------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDIL 426 (623)
Q Consensus 378 -----a~~G~~vp~~~~~---~l~~---------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~ 426 (623)
.+...|+|+.... ..++ ++.++..+++. +..++.+++||+||+ |+++++
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar 163 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG 163 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence 0112467775310 1111 12345566763 567788999999999 899999
Q ss_pred HhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 427 ~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+++.+|+++||||||+|||+.....+...+.+...+.+.|+|++||+.+ +..+|+++..+.+|++...
T Consensus 164 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI 232 (289)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999554433345889999999987 5689999999999988654
No 130
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.93 E-value=3.4e-25 Score=221.69 Aligned_cols=164 Identities=18% Similarity=0.187 Sum_probs=127.8
Q ss_pred EEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhce
Q 006974 327 MTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 382 (623)
Q Consensus 327 l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~ 382 (623)
++++|+++.|++ ..+ ++||++.+| ++++|+|||||||||||+++ |+..+. .+...
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G-~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAG-EKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 788999999975 334 999999999 99999999999999999999 665321 11234
Q ss_pred eecCCCCC-CccHHH---------------HHHHHcCCchhhhcc-----------cccccHHHH-HHHHHHHhcCCCcE
Q 006974 383 YLPAKNHP-RLPWFD---------------LILADIGDHQSLEQN-----------LSTFSGHIS-RIVDILELVSRESL 434 (623)
Q Consensus 383 ~vp~~~~~-~l~~~d---------------~i~~~ig~~~~~~~~-----------~stfS~g~~-rl~~~~~l~~~~~L 434 (623)
|+|+.... ..++.+ .++..+++.+.+++. +.+|||||+ |+.++++++.+|++
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 161 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI 161 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 77776421 012222 234455665555553 369999999 89999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEE
Q 006974 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (623)
Q Consensus 435 lLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~ 493 (623)
+||||||+|||+.....+...+. .+.+. .|+|++||+.++..+|++++.+.+|.+..
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~-~~~~~-~tii~~sH~~~~~~~~d~v~~l~~g~i~~ 218 (220)
T cd03245 162 LLLDEPTSAMDMNSEERLKERLR-QLLGD-KTLIIITHRPSLLDLVDRIIVMDSGRIVA 218 (220)
T ss_pred EEEeCccccCCHHHHHHHHHHHH-HhcCC-CEEEEEeCCHHHHHhCCEEEEEeCCeEee
Confidence 99999999999999999999544 45554 89999999998668999999999998753
No 131
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2e-25 Score=230.53 Aligned_cols=166 Identities=17% Similarity=0.111 Sum_probs=133.1
Q ss_pred EEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------------hhhc
Q 006974 328 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAG 381 (623)
Q Consensus 328 ~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------------a~~G 381 (623)
.++|+++.|++..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+..
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREG-EIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 35688999988765 999999999 99999999999999999999 766421 1123
Q ss_pred eeecCCCCC--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974 382 LYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (623)
Q Consensus 382 ~~vp~~~~~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLL 437 (623)
.|+|+.... .+++ ++.++..+|+.+.+++.+++||+||+ |+++|++++.+|+++||
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 467765311 1111 12345667888888999999999999 79999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 438 DEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
||||+|||+.....+...+.+...+.|.|+|++||+.+ +..+||+++.+.+|++...
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~ 242 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQV 242 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 99999999999999999554433345789999999987 5689999999999988654
No 132
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.93 E-value=1.9e-25 Score=234.81 Aligned_cols=168 Identities=19% Similarity=0.238 Sum_probs=139.9
Q ss_pred CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-----------------hhceee
Q 006974 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-----------------KAGLYL 384 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-----------------~~G~~v 384 (623)
..++++||+|.||+..+ ++|+++.+| +++.|+||+||||||+||+| |+..+-+ +...+|
T Consensus 4 ~~l~i~~v~k~yg~~~av~~isl~i~~G-ef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~V 82 (352)
T COG3842 4 PALEIRNVSKSFGDFTAVDDISLDIKKG-EFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMV 82 (352)
T ss_pred ceEEEEeeeeecCCeeEEecceeeecCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhccccee
Confidence 35889999999997665 899999999 99999999999999999999 5554321 112356
Q ss_pred cCCC--CCCccHHH----------------------HHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeC
Q 006974 385 PAKN--HPRLPWFD----------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (623)
Q Consensus 385 p~~~--~~~l~~~d----------------------~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDE 439 (623)
+|+. ++.+++++ +++..+++.+..++.++.||||++ |+++|++++.+|.++||||
T Consensus 83 FQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDE 162 (352)
T COG3842 83 FQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDE 162 (352)
T ss_pred ecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcC
Confidence 6653 12333333 346677888899999999999999 8999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (623)
Q Consensus 440 p~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~ 493 (623)
|.+.||..-+..+...+.+...+.|.|+|++|||.+ -..++|++.++.+|+++-
T Consensus 163 PlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q 217 (352)
T COG3842 163 PLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQ 217 (352)
T ss_pred cccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceee
Confidence 999999999999999777777778999999999987 457999999999998753
No 133
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.93 E-value=2.9e-25 Score=227.01 Aligned_cols=165 Identities=19% Similarity=0.254 Sum_probs=132.3
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--------hhceeecCCCCC--Cc
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNHP--RL 392 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--------~~G~~vp~~~~~--~l 392 (623)
.++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+.+ ....|+|+.... .+
T Consensus 4 ~l~~~~l~~~~~~~~vl~~vs~~i~~G-e~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l 82 (251)
T PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPG-KILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTL 82 (251)
T ss_pred EEEEeceEEEECCceEEEeEEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEecccccccccc
Confidence 5789999999987655 999999999 99999999999999999999 7665421 123467776311 11
Q ss_pred --cH--------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHH
Q 006974 393 --PW--------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATS 455 (623)
Q Consensus 393 --~~--------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~a 455 (623)
.. +..++..+|+.+..++.+.+||+||+ |++++++++.+|+++||||||+|||+.....+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~ 162 (251)
T PRK09544 83 PLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDL 162 (251)
T ss_pred ChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence 11 22345677888888999999999999 89999999999999999999999999999999995
Q ss_pred HHHHHhcC-CcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974 456 ILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (623)
Q Consensus 456 ll~~l~~~-~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~ 493 (623)
+. .+.+. +.|+|++||+.+ +..+|++++.+.+ .+..
T Consensus 163 L~-~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~ 200 (251)
T PRK09544 163 ID-QLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICC 200 (251)
T ss_pred HH-HHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEe
Confidence 54 45544 789999999988 5688999988864 5543
No 134
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.93 E-value=3.2e-25 Score=227.27 Aligned_cols=166 Identities=17% Similarity=0.184 Sum_probs=134.8
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhceee
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLYL 384 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~~v 384 (623)
++++|+++.|++..+ ++||++.+| ++++|+||||+|||||||+| |++.+- .+...|+
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPG-SLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 578999999987666 999999999 99999999999999999999 665421 1123477
Q ss_pred cCCCCC--CccH-------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974 385 PAKNHP--RLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (623)
Q Consensus 385 p~~~~~--~l~~-------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL 436 (623)
|+.... .+++ +..++..+|+.+..++.++.||+||+ |++++++++.+|+++|
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 160 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLL 160 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 776311 1111 12345566777778899999999999 7999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 437 LDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|||||+|+|+.....+.. ++..+.+++.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 161 lDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (256)
T TIGR03873 161 LDEPTNHLDVRAQLETLA-LVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAA 218 (256)
T ss_pred EcCccccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEe
Confidence 999999999999999999 55566666889999999988 5589999999999988754
No 135
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.6e-25 Score=236.12 Aligned_cols=166 Identities=19% Similarity=0.264 Sum_probs=134.6
Q ss_pred EEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------------hhhce
Q 006974 327 MTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGL 382 (623)
Q Consensus 327 l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------------a~~G~ 382 (623)
+++ ||+++|++..+++||++.+| ++++|+||||||||||||+| |++.+. .+...
T Consensus 2 l~~-~l~k~~~~~~~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~ 79 (352)
T PRK11144 2 LEL-NFKQQLGDLCLTVNLTLPAQ-GITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIG 79 (352)
T ss_pred eEE-EEEEEeCCEEEEEEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEE
Confidence 556 89999998667999999999 99999999999999999999 775431 01123
Q ss_pred eecCCCC--CCccH---------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCC
Q 006974 383 YLPAKNH--PRLPW---------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (623)
Q Consensus 383 ~vp~~~~--~~l~~---------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~gl 444 (623)
|+|+... ..+++ ++.++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+||
T Consensus 80 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 80 YVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred EEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 6676541 11222 23456778888888999999999999 899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 445 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 445 D~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|+..+..+...+.+...+.+.|+|++||+.+ +..+||++..+.+|++...
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~ 210 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAF 210 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEe
Confidence 9999999999554433344789999999987 6689999999999988654
No 136
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.93 E-value=2.9e-25 Score=221.56 Aligned_cols=163 Identities=23% Similarity=0.232 Sum_probs=129.6
Q ss_pred CCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------hhhceee
Q 006974 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------SKAGLYL 384 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------a~~G~~v 384 (623)
+..++++|++++|+++.+ ++||++.+| ++++|+||||||||||+|++ |+..+- .+...|+
T Consensus 9 ~~~l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~ 87 (214)
T PRK13543 9 PPLLAAHALAFSRNEEPVFGPLDFHVDAG-EALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYL 87 (214)
T ss_pred cceEEEeeEEEecCCceeeecceEEECCC-CEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEe
Confidence 346899999999987655 999999999 99999999999999999999 665431 1113466
Q ss_pred cCCCC--CCccHH------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCC
Q 006974 385 PAKNH--PRLPWF------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 443 (623)
Q Consensus 385 p~~~~--~~l~~~------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~g 443 (623)
|+... ..++.. ..++..+|+.+..++.+.+||+||+ |++++++++.+|+++||||||+|
T Consensus 88 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 167 (214)
T PRK13543 88 GHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYAN 167 (214)
T ss_pred ecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 66531 111222 2345566777777889999999999 89999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeC
Q 006974 444 TDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (623)
Q Consensus 444 lD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~ 488 (623)
+|+.....+.. ++..+.+.+.|+|++||+.+ +..+|++.+.+..
T Consensus 168 LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 168 LDLEGITLVNR-MISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCHHHHHHHHH-HHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 99999999998 55555666889999999987 6689988776653
No 137
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4e-25 Score=229.24 Aligned_cols=167 Identities=16% Similarity=0.135 Sum_probs=134.4
Q ss_pred cEEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhce
Q 006974 326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 382 (623)
Q Consensus 326 ~l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~ 382 (623)
.++++||+++|+ +..+ ++||++.+| ++++|+||||||||||+|+| |+..+. .+...
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRN-SRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 478899999995 4434 999999999 99999999999999999999 665421 11224
Q ss_pred eecCCCC---CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974 383 YLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (623)
Q Consensus 383 ~vp~~~~---~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLL 437 (623)
|+|+... ...++ ++.++..+|+.+..++.+..||+||+ |+.++++++.+|+++||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llil 161 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVL 161 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 6776531 11121 23345667888888999999999999 89999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 438 DEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 438 DEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
||||+|||+.....+... +..+.+ .+.|+|++||+.+ +..+|+++..+.+|++...
T Consensus 162 DEPt~gLD~~~~~~l~~~-l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~ 219 (277)
T PRK13652 162 DEPTAGLDPQGVKELIDF-LNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAY 219 (277)
T ss_pred eCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEE
Confidence 999999999999999994 445554 4889999999988 4579999999999998765
No 138
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.6e-25 Score=225.21 Aligned_cols=167 Identities=14% Similarity=0.170 Sum_probs=136.5
Q ss_pred cEEEceeeeecCCc----c--c-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh---------------------
Q 006974 326 EMTVGSLSKGISDF----P--V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--------------------- 376 (623)
Q Consensus 326 ~l~~~~l~~~y~~~----~--v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~--------------------- 376 (623)
++++++|+|.|... + + ++||++++| ++++|+|++|+|||||+|++ +|-.+
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~G-eI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr 79 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKG-EIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELR 79 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCC-cEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHH
Confidence 36889999999751 2 2 899999999 99999999999999999999 44322
Q ss_pred -hhhhceeecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCC
Q 006974 377 -MSKAGLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (623)
Q Consensus 377 -~a~~G~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~ 431 (623)
..+...+++|..+ ...++ +..+++.+|+.|..+++++.||||+| |+++|++++.+
T Consensus 80 ~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~ 159 (339)
T COG1135 80 QLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANN 159 (339)
T ss_pred HHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcC
Confidence 1122235666531 11112 23467889999999999999999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 432 ESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~-~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|++||.||||+.|||.....+.. ++..+. +.|.|++++||.++ ++.+|+++.++++|+++..
T Consensus 160 P~iLL~DEaTSALDP~TT~sIL~-LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~ 223 (339)
T COG1135 160 PKILLCDEATSALDPETTQSILE-LLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEE 223 (339)
T ss_pred CCEEEecCccccCChHHHHHHHH-HHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEe
Confidence 99999999999999999999999 555565 45889999999999 7789999999999998754
No 139
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.93 E-value=7.1e-25 Score=224.94 Aligned_cols=168 Identities=19% Similarity=0.167 Sum_probs=134.1
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh----------------h---------
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------M--------- 377 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~----------------~--------- 377 (623)
+++++||++.|++..+ ++||++.+| ++++|+||||||||||+|++ |++.+ .
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 6 LLSVRGLTKLYGPRKGCRDVSFDLYPG-EVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred eEEEeeeEEEcCCceeeeeeeEEEeCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 5889999999987655 999999999 99999999999999999999 66532 1
Q ss_pred ---hhhceeecCCCC----CCccH----------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHH
Q 006974 378 ---SKAGLYLPAKNH----PRLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDIL 426 (623)
Q Consensus 378 ---a~~G~~vp~~~~----~~l~~----------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~ 426 (623)
.+...|+|+... ..++. ++.++..+|+. +.+++.+++||+||+ |+++|+
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~lar 164 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIAR 164 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHH
Confidence 012357777641 01111 12345667776 467899999999999 899999
Q ss_pred HhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH-HhhccccceeeCceEEEe
Q 006974 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (623)
Q Consensus 427 ~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l-~~~~~~~~~i~~g~~~~~ 494 (623)
+++.+|+++||||||+|||+.....+...+.+...+.+.|+|++||+.+. ..+|++++.+.+|++...
T Consensus 165 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~ 233 (258)
T PRK11701 165 NLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVES 233 (258)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 99999999999999999999999999995554333448899999999885 468999999999998654
No 140
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=7.4e-25 Score=224.86 Aligned_cols=166 Identities=19% Similarity=0.240 Sum_probs=131.1
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh--------------------------
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------------- 376 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------------- 376 (623)
.++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+
T Consensus 12 ~l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 90 (258)
T PRK14268 12 QIKVENLNLWYGEKQALKNVSMQIPKN-SVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVE 90 (258)
T ss_pred eEEEeeeEEEeCCeeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHH
Confidence 5889999999987655 999999999 99999999999999999999 76532
Q ss_pred hhhhceeecCCCCC-CccHHH---------------------HHHHHcCC----chhhhcccccccHHHH-HHHHHHHhc
Q 006974 377 MSKAGLYLPAKNHP-RLPWFD---------------------LILADIGD----HQSLEQNLSTFSGHIS-RIVDILELV 429 (623)
Q Consensus 377 ~a~~G~~vp~~~~~-~l~~~d---------------------~i~~~ig~----~~~~~~~~stfS~g~~-rl~~~~~l~ 429 (623)
..+...|+|+.... ..+..+ .++..+|+ .+..++.+.+||+||+ |++++++++
T Consensus 91 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 170 (258)
T PRK14268 91 LRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLA 170 (258)
T ss_pred HhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 01123466765311 112222 23444554 2345778899999999 899999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
.+|+++||||||+|+|+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 171 ~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 234 (258)
T PRK14268 171 VKPKIILFDEPTSALDPISTARIED-LIMNLKK-DYTIVIVTHNMQQAARISDYTGFFLMGELIEF 234 (258)
T ss_pred cCCCEEEEeCCCcccCHHHHHHHHH-HHHHHhh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999998 4545554 689999999987 5678999999999998654
No 141
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=5e-25 Score=229.04 Aligned_cols=168 Identities=18% Similarity=0.167 Sum_probs=135.9
Q ss_pred CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh---------------------
Q 006974 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------------------- 378 (623)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--------------------- 378 (623)
.+++++|+++.|++ ..+ ++||++.+| ++++|+||||||||||+|+| |+..+..
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~G-e~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRG-SWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCC-CEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 46899999999964 234 999999999 99999999999999999999 7654321
Q ss_pred -hhceeecCCCC---CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCC
Q 006974 379 -KAGLYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (623)
Q Consensus 379 -~~G~~vp~~~~---~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~ 432 (623)
+...|+|+... ....+ ++.++..+|+.+..++.++.||+||+ |++++++++.+|
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P 162 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEP 162 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 12246776531 11111 22346667888888999999999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 433 SLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
+++||||||+|||+.....+...+ ..+.+ .|.|+|++||+++....|++++.+.+|++...
T Consensus 163 ~llllDEPt~gLD~~~~~~l~~~l-~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~ 224 (282)
T PRK13640 163 KIIILDESTSMLDPAGKEQILKLI-RKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQ 224 (282)
T ss_pred CEEEEECCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999954 45554 48899999999986678999999999998765
No 142
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.93 E-value=7.8e-25 Score=226.36 Aligned_cols=166 Identities=19% Similarity=0.163 Sum_probs=132.8
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------------
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------------- 377 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------------- 377 (623)
++++|++++|++..+ ++||++.+| ++++|+||||||||||||+| |++.+.
T Consensus 2 l~~~nl~~~~~~~~il~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 2 LTADHLHVARRHRAILRDLSLRIEPG-RVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred eEEEEEEEEECCEeEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 678999999987665 999999999 99999999999999999999 776432
Q ss_pred -hhhceeecCCCC--CCccHH-------------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHh
Q 006974 378 -SKAGLYLPAKNH--PRLPWF-------------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILEL 428 (623)
Q Consensus 378 -a~~G~~vp~~~~--~~l~~~-------------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l 428 (623)
.+...|+|+... ..+++. ..++..+|+....++.+++||+||+ |+++++++
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral 160 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVL 160 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 112346676531 111222 2344556777777889999999999 79999999
Q ss_pred c---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 429 V---------SRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 429 ~---------~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+ .+|+++||||||+|||+.....+...+. .+.+ .+.|+|++||+.+ +..+|+++..+.+|++...
T Consensus 161 ~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~ 236 (272)
T PRK13547 161 AQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVR-RLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAH 236 (272)
T ss_pred hccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHH-HHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEe
Confidence 8 5999999999999999999999999555 4554 4789999999987 5579999999999988654
No 143
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.92 E-value=4.3e-25 Score=236.03 Aligned_cols=167 Identities=16% Similarity=0.206 Sum_probs=136.0
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeecC
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPA 386 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp~ 386 (623)
++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...|+|+
T Consensus 3 L~i~~l~~~~~~~~~l~~isl~i~~G-e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q 81 (353)
T PRK10851 3 IEIANIKKSFGRTQVLNDISLDIPSG-QMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQ 81 (353)
T ss_pred EEEEEEEEEeCCeEEEEEeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEec
Confidence 688999999987655 999999999 99999999999999999999 665431 112346777
Q ss_pred CCC--CCccH-------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEe
Q 006974 387 KNH--PRLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (623)
Q Consensus 387 ~~~--~~l~~-------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLD 438 (623)
+.. ..+++ +..++..+|+.+..++.+.+|||||+ |++++++++.+|+++|||
T Consensus 82 ~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLD 161 (353)
T PRK10851 82 HYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLD 161 (353)
T ss_pred CcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 641 11111 22356677888888999999999999 899999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 439 Ep~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|||+|||+..+..+...+.+...+.+.|+|++|||.+ ...+||++..+.+|++...
T Consensus 162 EP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~ 218 (353)
T PRK10851 162 EPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQA 218 (353)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999555433344889999999987 5789999999999998754
No 144
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=3.8e-25 Score=219.09 Aligned_cols=154 Identities=21% Similarity=0.238 Sum_probs=121.1
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------------------hhceeec
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------------------KAGLYLP 385 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------------------~~G~~vp 385 (623)
++++|+++.|++..+ ++||++.+| ++++|+||||||||||++++ |+..+.+ +.-.|+|
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 2 LEARNLACERDERILFSGLSFTLNAG-ELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred eEEEEEEEEECCEEEEecceEEECCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence 678999999987655 999999999 99999999999999999999 6654311 1123455
Q ss_pred CCCC--CCccH------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCC
Q 006974 386 AKNH--PRLPW------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (623)
Q Consensus 386 ~~~~--~~l~~------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~gl 444 (623)
+... ..+++ ++.++..+|+.+..++.+++||+||+ |++++++++.+|+++||||||+|+
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 160 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAI 160 (204)
T ss_pred CccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 4421 11111 23456677887778899999999999 899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccc
Q 006974 445 DPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDK 482 (623)
Q Consensus 445 D~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~ 482 (623)
|+.....+.. ++..+.+.+.|+|++||+.+....|+.
T Consensus 161 D~~~~~~l~~-~l~~~~~~~~tiii~sh~~~~i~~~~~ 197 (204)
T PRK13538 161 DKQGVARLEA-LLAQHAEQGGMVILTTHQDLPVASDKV 197 (204)
T ss_pred CHHHHHHHHH-HHHHHHHCCCEEEEEecChhhhccCCc
Confidence 9999999998 455556668899999999875543443
No 145
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.92 E-value=3.4e-25 Score=238.19 Aligned_cols=169 Identities=17% Similarity=0.191 Sum_probs=138.2
Q ss_pred CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceee
Q 006974 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYL 384 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~v 384 (623)
.+++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...|+
T Consensus 13 ~~L~l~~l~~~~~~~~~l~~vsl~i~~G-e~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 91 (375)
T PRK09452 13 PLVELRGISKSFDGKEVISNLDLTINNG-EFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTV 91 (375)
T ss_pred ceEEEEEEEEEECCeEEEeeeEEEEeCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 35899999999987655 899999999 99999999999999999999 766531 1223467
Q ss_pred cCCCC--CCccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCC
Q 006974 385 PAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 440 (623)
Q Consensus 385 p~~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp 440 (623)
|++.. ..+++. +.++..+|+.+..++.+++|||||+ |++++++++.+|+++|||||
T Consensus 92 fQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP 171 (375)
T PRK09452 92 FQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDES 171 (375)
T ss_pred ecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 77641 122222 2345667888888999999999999 89999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 441 ~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
++|||+..+..+...+.+...+.+.|+|++|||.+ ...++|++..+.+|++...
T Consensus 172 ~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~ 226 (375)
T PRK09452 172 LSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQD 226 (375)
T ss_pred CCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999555544455889999999987 5679999999999998754
No 146
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.92 E-value=4.6e-25 Score=223.97 Aligned_cols=166 Identities=22% Similarity=0.281 Sum_probs=128.8
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhh--hhh-------------------hhh-c
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SLM-------------------SKA-G 381 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~--~~~-------------------a~~-G 381 (623)
++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |+. .+. .+. .
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKG-EIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 367899999987655 999999999 99999999999999999999 773 210 112 2
Q ss_pred eeecCCCCC--CccH----------------------------HHHHHHHcCCch-hhhcccc-cccHHHH-HHHHHHHh
Q 006974 382 LYLPAKNHP--RLPW----------------------------FDLILADIGDHQ-SLEQNLS-TFSGHIS-RIVDILEL 428 (623)
Q Consensus 382 ~~vp~~~~~--~l~~----------------------------~d~i~~~ig~~~-~~~~~~s-tfS~g~~-rl~~~~~l 428 (623)
.|+|+.... .++. +..++..+|+.+ ..++.+. .||+||+ |+++++++
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al 159 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMA 159 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHH
Confidence 466766411 0111 122344566653 4566776 5999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH-Hhh-ccccceeeCceEEEe
Q 006974 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCL-KDKDTRFENAATEFS 494 (623)
Q Consensus 429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l-~~~-~~~~~~i~~g~~~~~ 494 (623)
+.+|+++||||||+|||+.....+... +..+.+.+.|+|++||+.+. ..+ |++++.+.+|++...
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~ 226 (243)
T TIGR01978 160 LLEPKLAILDEIDSGLDIDALKIVAEG-INRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKS 226 (243)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEe
Confidence 999999999999999999999999994 45566668899999999884 456 799999999988654
No 147
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.92 E-value=5.1e-25 Score=246.10 Aligned_cols=167 Identities=17% Similarity=0.152 Sum_probs=136.0
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhcee
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY 383 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~~ 383 (623)
+++++|+++.|++..+ ++||++.+| ++++|+||||||||||||++ |++.+- .+.-.+
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAG-DSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 4789999999987555 999999999 99999999999999999999 765421 011235
Q ss_pred ecCCCCC----------CccH-------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeC
Q 006974 384 LPAKNHP----------RLPW-------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (623)
Q Consensus 384 vp~~~~~----------~l~~-------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDE 439 (623)
+|+.... .+.+ +..++..+|+.+..++.+++|||||+ |+++|++++.+|+++||||
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 161 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDE 161 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 5654211 1111 23456788888888999999999999 8999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 440 p~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+||+++.+.+|++...
T Consensus 162 Pt~~LD~~~~~~l~~-~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~ 216 (490)
T PRK10938 162 PFDGLDVASRQQLAE-LLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAET 216 (490)
T ss_pred CcccCCHHHHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEe
Confidence 999999999999999 55556666889999999987 6689999999999987653
No 148
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.92 E-value=2.6e-25 Score=220.17 Aligned_cols=154 Identities=19% Similarity=0.234 Sum_probs=122.0
Q ss_pred EceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------------hhhce
Q 006974 329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGL 382 (623)
Q Consensus 329 ~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------------a~~G~ 382 (623)
++||++.|++..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+...
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKG-KMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCC-cEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 3688999987655 999999999 99999999999999999999 665421 11234
Q ss_pred eecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEe
Q 006974 383 YLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (623)
Q Consensus 383 ~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLD 438 (623)
|+|+... ...++ +..++..+|+.+..++.+.+||+||+ |+.++++++.+|+++|||
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllD 159 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILAD 159 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 5665531 11111 12356677887788899999999999 899999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccc
Q 006974 439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDT 484 (623)
Q Consensus 439 Ep~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~ 484 (623)
|||+|+|+.....+... +..+.+.+.++|++||+.++..+|+++.
T Consensus 160 EPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~sh~~~~~~~~d~i~ 204 (206)
T TIGR03608 160 EPTGSLDPKNRDEVLDL-LLELNDEGKTIIIVTHDPEVAKQADRVI 204 (206)
T ss_pred CCcCCCCHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHhhcCEEE
Confidence 99999999999999995 4555556889999999998666777654
No 149
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=9.8e-25 Score=223.34 Aligned_cols=167 Identities=22% Similarity=0.307 Sum_probs=131.2
Q ss_pred CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------------
Q 006974 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------ 377 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------------ 377 (623)
..++++|+++.|++..+ ++||++.+| ++++|+||||||||||||++ |++.+-
T Consensus 6 ~~l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 6 AIIETENLNLFYTDFKALNNINIKILKN-SITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred ceEEEeeeEEEeCCceeecceeeEEcCC-CEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 46899999999987555 999999999 99999999999999999999 776421
Q ss_pred --hhhceeecCCCCC-CccHHHHH----------------------HHHcCC----chhhhcccccccHHHH-HHHHHHH
Q 006974 378 --SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGD----HQSLEQNLSTFSGHIS-RIVDILE 427 (623)
Q Consensus 378 --a~~G~~vp~~~~~-~l~~~d~i----------------------~~~ig~----~~~~~~~~stfS~g~~-rl~~~~~ 427 (623)
.+...|+|+.... ..+..+++ +..+++ .+..++.+++|||||+ |++++++
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~lara 164 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIART 164 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHH
Confidence 0112466665311 12222222 233343 2346778899999999 8999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
++.+|+++||||||+|||+.....+...+. .+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 165 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~~~-~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 230 (254)
T PRK14273 165 LAIEPNVILMDEPTSALDPISTGKIEELII-NLKE-SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEE 230 (254)
T ss_pred HHcCCCEEEEeCCCcccCHHHHHHHHHHHH-HHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999544 4554 689999999988 4678999999999998654
No 150
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5.3e-25 Score=228.03 Aligned_cols=166 Identities=19% Similarity=0.189 Sum_probs=133.8
Q ss_pred EEEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------hhhc
Q 006974 327 MTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAG 381 (623)
Q Consensus 327 l~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------a~~G 381 (623)
++++||++.|++ ..+ ++||++.+| ++++|+||||||||||+|++ |++.+. .+..
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKG-EMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 678999999963 334 999999999 99999999999999999999 665321 1123
Q ss_pred eeecCCCC---CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974 382 LYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (623)
Q Consensus 382 ~~vp~~~~---~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL 436 (623)
.|+|+... ...++ +..++..+|+.+..++.+++||+||+ |+.++++++.+|+++|
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll 160 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIV 160 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 47777631 11122 12345667777778899999999999 7999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 437 LDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|||||+|+|+.....+...+ ..+.+.+.|+|++||+.+ +..+|+++..+.+|++..+
T Consensus 161 lDEPt~gLD~~~~~~l~~~l-~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~ 218 (275)
T PRK13639 161 LDEPTSGLDPMGASQIMKLL-YDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKE 218 (275)
T ss_pred EeCCCcCCCHHHHHHHHHHH-HHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999954 456656889999999988 4568999999999998765
No 151
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5.7e-25 Score=228.73 Aligned_cols=167 Identities=17% Similarity=0.149 Sum_probs=135.6
Q ss_pred cEEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------hhh
Q 006974 326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKA 380 (623)
Q Consensus 326 ~l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------a~~ 380 (623)
+++++||++.|+ +..+ ++||++.+| ++++|+||||+|||||+|+| |++.+. ...
T Consensus 5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDGTHALKGININIKKG-EVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCCCeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 688999999996 4444 999999999 99999999999999999999 665421 112
Q ss_pred ceeecCCCC---CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974 381 GLYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (623)
Q Consensus 381 G~~vp~~~~---~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll 435 (623)
..|+|+... ....+ ++.++..+|+....++.+..||+||+ |+.++++++.+|+++
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lL 163 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVL 163 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 357777641 11111 23345677888888899999999999 799999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhH-HhhccccceeeCceEEEe
Q 006974 436 LIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (623)
Q Consensus 436 LLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l-~~~~~~~~~i~~g~~~~~ 494 (623)
||||||+|||+.....+...+ ..+.+ .|.|+|++||+.+. ..+|+++..+.+|++..+
T Consensus 164 ilDEPt~gLD~~~~~~l~~~l-~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~ 223 (283)
T PRK13636 164 VLDEPTAGLDPMGVSEIMKLL-VEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQ 223 (283)
T ss_pred EEeCCccCCCHHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999944 45554 48899999999884 569999999999998765
No 152
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.1e-24 Score=222.80 Aligned_cols=166 Identities=20% Similarity=0.240 Sum_probs=129.4
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh-----h-----------h---------
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-----L-----------M--------- 377 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~-----~-----------~--------- 377 (623)
.++++||+++|++..+ ++||++.+| ++++|+||||||||||||++ |+.. + +
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 84 (253)
T PRK14242 6 KMEARGLSFFYGDFQALHDISLEFEQN-QVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVE 84 (253)
T ss_pred EEEEeeeEEEECCeeeecceeEEEeCC-CEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHH
Confidence 5889999999987555 999999999 99999999999999999999 7642 0 0
Q ss_pred -hhhceeecCCCCC-CccHHHHH----------------------HHHcCCc----hhhhcccccccHHHH-HHHHHHHh
Q 006974 378 -SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (623)
Q Consensus 378 -a~~G~~vp~~~~~-~l~~~d~i----------------------~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~l 428 (623)
.+...|+|+.... ..++.+++ +..+|+. ...++.+.+||+||+ |+++++++
T Consensus 85 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 164 (253)
T PRK14242 85 LRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARAL 164 (253)
T ss_pred HhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHH
Confidence 1123467765311 01222222 2334442 235677899999999 79999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+.+|+++||||||+|||+.....+...+ ..+.+ +.|+|++||+.+ +..+|+++..+.+|++...
T Consensus 165 ~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~-~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14242 165 AVEPEVLLMDEPASALDPIATQKIEELI-HELKA-RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEV 229 (253)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhc-CCeEEEEEecHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999954 45554 689999999987 5689999999999988654
No 153
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=6.6e-25 Score=211.82 Aligned_cols=147 Identities=26% Similarity=0.337 Sum_probs=113.1
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------------------hhceeec
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------------------KAGLYLP 385 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------------------~~G~~vp 385 (623)
++++|+++.|++..+ ++||++.+| ++++|+||||||||||||++ |+..+.. +...|+|
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G-e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKG-EIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP 79 (173)
T ss_pred CEEEEEEEEECCeeeeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe
Confidence 357899999976555 999999999 99999999999999999999 5443210 1112344
Q ss_pred CCCCC--CccHHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 006974 386 AKNHP--RLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD 462 (623)
Q Consensus 386 ~~~~~--~l~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~ 462 (623)
+.... ..++.+++ . ||+||+ |++++++++.+|+++||||||+|+|+.....+... +..+.+
T Consensus 80 q~~~~~~~~tv~~~~--------------~-LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~-l~~~~~ 143 (173)
T cd03230 80 EEPSLYENLTVRENL--------------K-LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWEL-LRELKK 143 (173)
T ss_pred cCCccccCCcHHHHh--------------h-cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH-HHHHHH
Confidence 43210 01112221 1 999999 79999999999999999999999999999999994 555665
Q ss_pred CCcEEEEEcCchh-HHhhccccceeeCce
Q 006974 463 RVGLAVVTTHYAD-LSCLKDKDTRFENAA 490 (623)
Q Consensus 463 ~~~~vii~TH~~~-l~~~~~~~~~i~~g~ 490 (623)
+|.++|++||+.+ +..+|++.+.+.+|+
T Consensus 144 ~g~tiii~th~~~~~~~~~d~i~~l~~g~ 172 (173)
T cd03230 144 EGKTILLSSHILEEAERLCDRVAILNNGR 172 (173)
T ss_pred CCCEEEEECCCHHHHHHhCCEEEEEeCCC
Confidence 5889999999987 556899998888774
No 154
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.92 E-value=6e-25 Score=226.71 Aligned_cols=167 Identities=18% Similarity=0.165 Sum_probs=131.9
Q ss_pred cEEEceeeeecCC---------ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------
Q 006974 326 EMTVGSLSKGISD---------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------- 377 (623)
Q Consensus 326 ~l~~~~l~~~y~~---------~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------- 377 (623)
+++++||+++|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREG-QTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCC-CEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 5789999999962 234 999999999 99999999999999999999 776431
Q ss_pred ---hhhceeecCCCC----CCccH----------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHH
Q 006974 378 ---SKAGLYLPAKNH----PRLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDIL 426 (623)
Q Consensus 378 ---a~~G~~vp~~~~----~~l~~----------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~ 426 (623)
.+...|+|+... ..+.+ +..++..+|+. +..+..+++||+||+ |+++++
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar 162 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLAR 162 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHH
Confidence 112346777531 00010 12346677773 556778899999999 799999
Q ss_pred HhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 427 ~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+++.+|+++||||||+|||+.....+...+.+ +.+ .+.|+|++||+.+ +..+|+++..+.+|++...
T Consensus 163 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~-~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~ 231 (267)
T PRK15112 163 ALILRPKVIIADEALASLDMSMRSQLINLMLE-LQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVER 231 (267)
T ss_pred HHHhCCCEEEEcCCcccCCHHHHHHHHHHHHH-HHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEec
Confidence 99999999999999999999999999995554 554 4889999999987 5568999999999988654
No 155
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=6.4e-25 Score=221.75 Aligned_cols=166 Identities=16% Similarity=0.157 Sum_probs=133.9
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-----------------hhceeecC
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-----------------KAGLYLPA 386 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-----------------~~G~~vp~ 386 (623)
+.++|++++|+++.+ +++|++.+| ++++|+||||+|||||||++ |+..+-+ +.-.|+|+
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~G-e~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEG-EFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ 79 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence 357899999987666 999999999 99999999999999999999 6654311 11245666
Q ss_pred CCCC--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCC
Q 006974 387 KNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (623)
Q Consensus 387 ~~~~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~ 442 (623)
.... .+++ ++.++..+|+.+.+++.+..||+|++ |++++++++.+|+++||||||+
T Consensus 80 ~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~ 159 (232)
T cd03300 80 NYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLG 159 (232)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 5421 1121 12345667888888899999999999 8999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 443 GTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 443 glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|+|+.....+...+.+ +.+ .+.|+|++||+.+ +..+||+++.+.+|++...
T Consensus 160 gLD~~~~~~l~~~l~~-~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~ 212 (232)
T cd03300 160 ALDLKLRKDMQLELKR-LQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQI 212 (232)
T ss_pred cCCHHHHHHHHHHHHH-HHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEec
Confidence 9999999999995554 554 4889999999988 5789999999999988654
No 156
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.92 E-value=6.1e-25 Score=222.66 Aligned_cols=166 Identities=18% Similarity=0.224 Sum_probs=134.5
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeecC
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPA 386 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp~ 386 (623)
++++|+++.|++..+ ++||++.+| ++++|+||||+|||||+|+| |++.+. .+...|+|+
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTG-SLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence 357899999987666 999999999 99999999999999999999 665431 112346676
Q ss_pred CCCC--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCC
Q 006974 387 KNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (623)
Q Consensus 387 ~~~~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~ 442 (623)
.... .+++ ++.++..+++.+..++.+.+||+||+ |++++++++.+|+++|||||++
T Consensus 80 ~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~ 159 (237)
T TIGR00968 80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFG 159 (237)
T ss_pred ChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 5311 1111 23456677787788899999999999 7999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 443 GTDPSEGVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 443 glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|+|+.....+...+ ..+.+. ++|+|++||+.+ +..+|+++..+.+|++...
T Consensus 160 ~LD~~~~~~~~~~l-~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~ 212 (237)
T TIGR00968 160 ALDAKVRKELRSWL-RKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQI 212 (237)
T ss_pred cCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEe
Confidence 99999999999954 455554 789999999988 5789999999999998754
No 157
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.4e-24 Score=223.95 Aligned_cols=167 Identities=19% Similarity=0.242 Sum_probs=130.2
Q ss_pred CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh-----hh-------------------
Q 006974 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-----LM------------------- 377 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~-----~~------------------- 377 (623)
.+++++|+++.|++..+ ++||++.+| ++++|+||||||||||||++ |+.. +.
T Consensus 20 ~~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 20 HILEVKDLSIYYGEKRAVNDISMDIEKH-AVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred ceEEEEEEEEEeCCceeeeceEEEEcCC-CEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 46899999999987665 999999999 99999999999999999999 7642 10
Q ss_pred --hhhceeecCCCCC-CccHHHHH----------------------HHHcCCc----hhhhcccccccHHHH-HHHHHHH
Q 006974 378 --SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILE 427 (623)
Q Consensus 378 --a~~G~~vp~~~~~-~l~~~d~i----------------------~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~ 427 (623)
.+...|+|+.... ..+.++++ +..+++. ...++.+++||+||+ |++++++
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~lara 178 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIART 178 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHH
Confidence 1123466665311 01222222 2333332 345678999999999 8999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
++.+|+++||||||+|||+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus 179 l~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~-~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~ 244 (268)
T PRK14248 179 LAMKPAVLLLDEPASALDPISNAKIEE-LITELKE-EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEY 244 (268)
T ss_pred HhCCCCEEEEcCCCcccCHHHHHHHHH-HHHHHhc-CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999998 4545555 579999999987 6689999999999998765
No 158
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.92 E-value=6.6e-25 Score=220.70 Aligned_cols=162 Identities=23% Similarity=0.219 Sum_probs=128.4
Q ss_pred CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhce
Q 006974 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 382 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~ 382 (623)
.+++++||++.|++..+ ++||++.+| ++++|+||||||||||+++| |+..+. .+...
T Consensus 6 ~~i~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 6 PLLQLQNVGYLAGDAKILNNISFSLRAG-EFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred ceEEEeccEEeeCCceeeeccEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 35889999999987665 999999999 99999999999999999999 665421 11234
Q ss_pred eecCCCCC-CccH-------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCC
Q 006974 383 YLPAKNHP-RLPW-------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 440 (623)
Q Consensus 383 ~vp~~~~~-~l~~-------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp 440 (623)
|+|+.... ..++ +..++..+|+. ...++.+++||+|++ |++++++++.+|+++|||||
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 164 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEI 164 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 67765310 0011 23456667775 467899999999999 89999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceee
Q 006974 441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 487 (623)
Q Consensus 441 ~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~ 487 (623)
|+|||+.....+...+.+...+.+.++|++||+.+....|++++.+.
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~ 211 (225)
T PRK10247 165 TSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQ 211 (225)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEe
Confidence 99999999999999555544445889999999988556798887775
No 159
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.92 E-value=7.1e-25 Score=211.58 Aligned_cols=152 Identities=22% Similarity=0.288 Sum_probs=111.8
Q ss_pred EEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccH-------H
Q 006974 327 MTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW-------F 395 (623)
Q Consensus 327 l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~-------~ 395 (623)
++++|++++|++ ..+ +++|++.+| ++++|+|||||||||||+++ .|.+.|..|...+.. .
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~G-e~~~i~G~nGsGKStLl~~l--------~G~~~~~~G~i~~~g~~~~~~~~ 71 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPG-ESLAIIGPSGSGKSTLARLI--------LGLLRPTSGRVRLDGADISQWDP 71 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCC-CEEEEECCCCCCHHHHHHHH--------HhccCCCCCeEEECCEEcccCCH
Confidence 357899999975 233 999999999 99999999999999999999 333333332111000 0
Q ss_pred HHHHHHcCC--------chhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcE
Q 006974 396 DLILADIGD--------HQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGL 466 (623)
Q Consensus 396 d~i~~~ig~--------~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~ 466 (623)
......++. ...+..++ ||+||+ |++++++++.+|+++||||||+|+|+.....+... +..+.+++.|
T Consensus 72 ~~~~~~i~~~~q~~~~~~~tv~~~l--LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~-l~~~~~~~~t 148 (173)
T cd03246 72 NELGDHVGYLPQDDELFSGSIAENI--LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQA-IAALKAAGAT 148 (173)
T ss_pred HHHHhheEEECCCCccccCcHHHHC--cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHH-HHHHHhCCCE
Confidence 001111110 00111112 999999 89999999999999999999999999999999994 5556666889
Q ss_pred EEEEcCchhHHhhccccceeeCce
Q 006974 467 AVVTTHYADLSCLKDKDTRFENAA 490 (623)
Q Consensus 467 vii~TH~~~l~~~~~~~~~i~~g~ 490 (623)
+|++||+.+....|++++.+.+|+
T Consensus 149 ii~~sh~~~~~~~~d~v~~l~~G~ 172 (173)
T cd03246 149 RIVIAHRPETLASADRILVLEDGR 172 (173)
T ss_pred EEEEeCCHHHHHhCCEEEEEECCC
Confidence 999999998667899988888775
No 160
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.92 E-value=1.2e-24 Score=222.86 Aligned_cols=168 Identities=14% Similarity=0.180 Sum_probs=131.6
Q ss_pred cEEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh----h-----------------hhhce
Q 006974 326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----M-----------------SKAGL 382 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~----~-----------------a~~G~ 382 (623)
.++++||+++|+...+ ++||++.+| ++++|+||||||||||+|++ |+..+ . .+...
T Consensus 4 ~l~~~~l~~~~~~~il~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~ 82 (254)
T PRK10418 4 QIELRNIALQAAQPLVHGVSLTLQRG-RVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIA 82 (254)
T ss_pred EEEEeCeEEEeccceecceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEE
Confidence 5789999999943333 999999999 99999999999999999999 77643 1 01234
Q ss_pred eecCCCCCC----ccH-------------------HHHHHHHcCCch---hhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974 383 YLPAKNHPR----LPW-------------------FDLILADIGDHQ---SLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (623)
Q Consensus 383 ~vp~~~~~~----l~~-------------------~d~i~~~ig~~~---~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll 435 (623)
|+|+..... ..+ +..++..+|+.+ .+++.+++||+|++ |++++++++.+|+++
T Consensus 83 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lL 162 (254)
T PRK10418 83 TIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFI 162 (254)
T ss_pred EEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEE
Confidence 777764211 111 122345566654 46788999999999 799999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 436 LLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
||||||+|||+.....+...+.+...+.|.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus 163 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~ 222 (254)
T PRK10418 163 IADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQ 222 (254)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999554433445789999999988 5579999999999998654
No 161
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1e-24 Score=210.11 Aligned_cols=165 Identities=19% Similarity=0.242 Sum_probs=132.2
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhh----hh------------------------
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGL----AS------------------------ 375 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl----~~------------------------ 375 (623)
.++++||++.||++.+ ++++.++++ ++++|+||+|||||||||++.- +.
T Consensus 7 ~~~~~~l~~yYg~~~aL~~i~l~i~~~-~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~ 85 (253)
T COG1117 7 AIEVRDLNLYYGDKHALKDINLDIPKN-KVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVE 85 (253)
T ss_pred eeEecceeEEECchhhhccCceeccCC-ceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHH
Confidence 5789999999998776 999999999 9999999999999999999922 21
Q ss_pred hhhhhceeecCCCC-CCccHHHHHHH---------------------HcC----CchhhhcccccccHHHH-HHHHHHHh
Q 006974 376 LMSKAGLYLPAKNH-PRLPWFDLILA---------------------DIG----DHQSLEQNLSTFSGHIS-RIVDILEL 428 (623)
Q Consensus 376 ~~a~~G~~vp~~~~-~~l~~~d~i~~---------------------~ig----~~~~~~~~~stfS~g~~-rl~~~~~l 428 (623)
+..+.| .|+|.++ ..++++|++.. ... ..|.++++...||||++ |+++|+++
T Consensus 86 lRr~vG-MVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARal 164 (253)
T COG1117 86 LRRRVG-MVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARAL 164 (253)
T ss_pred HHHHhe-eeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHH
Confidence 123344 5666652 12445555421 111 14667788899999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|.+|++|||||||++|||.+...|.+ ++..|++ .-|+|+|||++. -++++|....|-+|.++..
T Consensus 165 Av~PeVlLmDEPtSALDPIsT~kIEe-Li~eLk~-~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~ 229 (253)
T COG1117 165 AVKPEVLLMDEPTSALDPISTLKIEE-LITELKK-KYTIVIVTHNMQQAARVSDYTAFFYLGELVEF 229 (253)
T ss_pred hcCCcEEEecCcccccCchhHHHHHH-HHHHHHh-ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEE
Confidence 99999999999999999999999999 6666774 589999999987 6678999888888887644
No 162
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=7.1e-25 Score=227.63 Aligned_cols=166 Identities=20% Similarity=0.166 Sum_probs=131.8
Q ss_pred EEEceeeeecCC-----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------
Q 006974 327 MTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (623)
Q Consensus 327 l~~~~l~~~y~~-----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------- 377 (623)
++++||++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+.
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDG-SYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 678999999974 234 999999999 99999999999999999999 775421
Q ss_pred --hhhceeecCCCC---CCccHH---------------------HHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhc
Q 006974 378 --SKAGLYLPAKNH---PRLPWF---------------------DLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELV 429 (623)
Q Consensus 378 --a~~G~~vp~~~~---~~l~~~---------------------d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~ 429 (623)
.+...|+|+... ...++. +.++..+|+. ...++.+++||+||+ |+.++++++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~ 161 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILA 161 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 012347777631 111221 2234556776 356888999999999 899999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
.+|+++||||||+|||+.....+...+ ..+++.+.|+|++||+.+ +..+|+++..+.+|++...
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 226 (280)
T PRK13649 162 MEPKILVLDEPTAGLDPKGRKELMTLF-KKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLS 226 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999954 455656889999999988 5579999999999998654
No 163
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.6e-24 Score=222.55 Aligned_cols=168 Identities=20% Similarity=0.211 Sum_probs=131.5
Q ss_pred CCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-----h------------------
Q 006974 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M------------------ 377 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-----~------------------ 377 (623)
.+.++++|+++.|++..+ ++||++.+| ++++|+||||||||||+|++ |++.+ .
T Consensus 11 ~~~l~~~~l~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 11 PSKIQVRNLNFYYGKFHALKNINLDIAKN-QVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred CceEEEEEEEEEeCCeEEeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 357899999999987655 999999999 99999999999999999999 77531 0
Q ss_pred ---hhhceeecCCCCC-CccHHH----------------------HHHHHcCC----chhhhcccccccHHHH-HHHHHH
Q 006974 378 ---SKAGLYLPAKNHP-RLPWFD----------------------LILADIGD----HQSLEQNLSTFSGHIS-RIVDIL 426 (623)
Q Consensus 378 ---a~~G~~vp~~~~~-~l~~~d----------------------~i~~~ig~----~~~~~~~~stfS~g~~-rl~~~~ 426 (623)
.+...|+|+.... ..+..+ .++..+|+ ....++.+.+||+||+ |+++++
T Consensus 90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 169 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIAR 169 (260)
T ss_pred HHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence 0112366665310 112222 23344554 2346778899999999 899999
Q ss_pred HhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 427 ~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+++.+|+++||||||+|||+.....+...+. .+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 170 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~-~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 236 (260)
T PRK10744 170 GIAIRPEVLLLDEPCSALDPISTGRIEELIT-ELKQ-DYTVVIVTHNMQQAARCSDYTAFMYLGELIEF 236 (260)
T ss_pred HHHCCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999998544 4554 679999999987 5579999999999998764
No 164
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.92 E-value=7.2e-25 Score=219.55 Aligned_cols=164 Identities=22% Similarity=0.306 Sum_probs=130.9
Q ss_pred EEEceeeeecCC----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------
Q 006974 327 MTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------- 377 (623)
Q Consensus 327 l~~~~l~~~y~~----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------- 377 (623)
++++|+++.|++ ..+ ++||++.+| ++++|+||||+|||||++++ |+..+.
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G-~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPG-EIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHH
Confidence 678999999974 334 999999999 99999999999999999999 665321
Q ss_pred hhhceeecCCCC--CCccH----------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCC
Q 006974 378 SKAGLYLPAKNH--PRLPW----------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (623)
Q Consensus 378 a~~G~~vp~~~~--~~l~~----------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~ 432 (623)
.+...|+|+... ..+++ +..++..+|+.+..++.+.+||+||+ |+.++++++.+|
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p 160 (220)
T TIGR02982 81 RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRP 160 (220)
T ss_pred HhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 122346666531 01111 23456677888888999999999999 799999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceE
Q 006974 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAAT 491 (623)
Q Consensus 433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~ 491 (623)
+++|||||++|+|+.....+...+.+...+.+.|+|++||++++..+|+++..+.+|++
T Consensus 161 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 161 KLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999995444333358999999999997789999999988764
No 165
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=8.6e-25 Score=227.06 Aligned_cols=167 Identities=17% Similarity=0.148 Sum_probs=134.9
Q ss_pred cEEEceeeeecCC------ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------
Q 006974 326 EMTVGSLSKGISD------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------- 377 (623)
Q Consensus 326 ~l~~~~l~~~y~~------~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------- 377 (623)
+++++|++++|++ +.+ ++||++.+| ++++|+||||||||||++++ |++.+.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKG-EFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 5789999999963 234 999999999 99999999999999999999 775421
Q ss_pred -hhhceeecCCCC---CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCC
Q 006974 378 -SKAGLYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (623)
Q Consensus 378 -a~~G~~vp~~~~---~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~ 431 (623)
.+...|+|+... ....+ ++.++..+|+.+..++.+.+||+||+ |+.++++++.+
T Consensus 83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~ 162 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMR 162 (280)
T ss_pred HhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 112346777531 00011 23446677888888999999999999 79999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
|+++||||||+|||+.....+.. ++..+.+ .|.|+|++||+++....|+++..+.+|.+...
T Consensus 163 p~llllDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~ 225 (280)
T PRK13633 163 PECIIFDEPTAMLDPSGRREVVN-TIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVME 225 (280)
T ss_pred CCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEe
Confidence 99999999999999999999998 5555654 58899999999986556999999999988765
No 166
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.4e-24 Score=224.64 Aligned_cols=166 Identities=19% Similarity=0.259 Sum_probs=132.5
Q ss_pred cEEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------hhhceeec
Q 006974 326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------SKAGLYLP 385 (623)
Q Consensus 326 ~l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------a~~G~~vp 385 (623)
.++++||++.|+ ++.+ ++||++.+| ++++|+||||||||||||+| |++.+. .+...|+|
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~ 84 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGG-SIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVP 84 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEec
Confidence 478999999995 4445 999999999 99999999999999999999 776431 11234677
Q ss_pred CCCCC----C--------c------c-----------HHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974 386 AKNHP----R--------L------P-----------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (623)
Q Consensus 386 ~~~~~----~--------l------~-----------~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll 435 (623)
+.... . + . .++.++..+|+.+..++.+.+||+||+ |++++++++.+|+++
T Consensus 85 q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~ll 164 (272)
T PRK15056 85 QSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVI 164 (272)
T ss_pred cccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 65310 0 0 0 122356677888888899999999999 899999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 436 LLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
||||||+|||+.....+.. ++..+.++|.|+|++||+.+ +..+|++.+.+ +|++...
T Consensus 165 llDEPt~~LD~~~~~~l~~-~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~ 222 (272)
T PRK15056 165 LLDEPFTGVDVKTEARIIS-LLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLAS 222 (272)
T ss_pred EEeCCCccCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEee
Confidence 9999999999999999999 45556666889999999987 66889987655 8887654
No 167
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=9e-25 Score=225.88 Aligned_cols=167 Identities=20% Similarity=0.182 Sum_probs=133.4
Q ss_pred cEEEceeeeecC--Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhc
Q 006974 326 EMTVGSLSKGIS--DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 381 (623)
Q Consensus 326 ~l~~~~l~~~y~--~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G 381 (623)
+++++|+++.|+ +..+ ++||++.+| ++++|+|||||||||||+++ |+..+. .+..
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEG-EYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 578999999995 3344 999999999 99999999999999999999 665421 1123
Q ss_pred eeecCCCC---CCccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974 382 LYLPAKNH---PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (623)
Q Consensus 382 ~~vp~~~~---~~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL 436 (623)
.|+|+... ...++. ..++..+|+...+++.+.+||+||+ |++++++++.+|+++|
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 165 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIII 165 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 47776631 111222 2345667787788999999999999 7999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 437 IDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 437 LDEp~~glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
|||||+|||+.....+...+ ..+.+. +.|+|++||+.+....|++++.+.+|++...
T Consensus 166 LDEP~~gLD~~~~~~l~~~l-~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~ 223 (271)
T PRK13632 166 FDESTSMLDPKGKREIKKIM-VDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQ 223 (271)
T ss_pred EeCCcccCCHHHHHHHHHHH-HHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEe
Confidence 99999999999999999854 445544 5899999999885568999999999998654
No 168
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=7.1e-25 Score=236.04 Aligned_cols=170 Identities=14% Similarity=0.155 Sum_probs=139.8
Q ss_pred CCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhcee
Q 006974 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLY 383 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~ 383 (623)
..+++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+. .+...|
T Consensus 17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~G-e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 95 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKG-EIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINM 95 (377)
T ss_pred CceEEEEeEEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 346899999999987555 899999999 99999999999999999999 666431 112347
Q ss_pred ecCCCC--CCccHHH---------------------HHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeC
Q 006974 384 LPAKNH--PRLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (623)
Q Consensus 384 vp~~~~--~~l~~~d---------------------~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDE 439 (623)
+|++.. ..+++.+ .++..+|+.+..++.+.+|||||+ |++++++++.+|+++||||
T Consensus 96 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDE 175 (377)
T PRK11607 96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDE 175 (377)
T ss_pred EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 777641 1222222 345667788888999999999999 8999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 440 p~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|++|||+..+..+...+.+.+.+.+.|+|++|||.+ ...+||++..+.+|++...
T Consensus 176 P~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~ 231 (377)
T PRK11607 176 PMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQI 231 (377)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEE
Confidence 999999999999998666666666899999999987 5689999999999998754
No 169
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=9e-25 Score=225.60 Aligned_cols=167 Identities=14% Similarity=0.081 Sum_probs=133.6
Q ss_pred cEEEceeeeecCCc--cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhc
Q 006974 326 EMTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 381 (623)
Q Consensus 326 ~l~~~~l~~~y~~~--~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G 381 (623)
+++++|+++.|++. .+ ++||++.+| ++++|+||||||||||+|+| |++.+. .+..
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~G-e~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKG-QWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 58899999999752 23 999999999 99999999999999999999 775431 1122
Q ss_pred eeecCCCC---CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974 382 LYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (623)
Q Consensus 382 ~~vp~~~~---~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL 436 (623)
.|+|+... ....+ +..++..+|+.+..++.+..||+||+ |++++++++.+|+++|
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 165 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVII 165 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 46776531 00111 12345667877788899999999999 8999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 437 IDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 437 LDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
|||||+|||+.....+...+. .+.+ .+.|+|++||+.+....|+++..+.+|++..+
T Consensus 166 LDEPt~~LD~~~~~~l~~~L~-~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~ 223 (269)
T PRK13648 166 LDEATSMLDPDARQNLLDLVR-KVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKE 223 (269)
T ss_pred EeCCcccCCHHHHHHHHHHHH-HHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEe
Confidence 999999999999999999554 4554 47899999999885556999999999998765
No 170
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=9.6e-25 Score=227.40 Aligned_cols=166 Identities=15% Similarity=0.195 Sum_probs=133.5
Q ss_pred EEEceeeeecCC-----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------
Q 006974 327 MTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (623)
Q Consensus 327 l~~~~l~~~y~~-----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------- 377 (623)
++++||++.|++ ..+ ++||++.+| ++++|+||||||||||+|+| |++.+.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQG-KYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 678999999963 134 999999999 99999999999999999999 665421
Q ss_pred --hhhceeecCCCC-CCc--cH---------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhc
Q 006974 378 --SKAGLYLPAKNH-PRL--PW---------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELV 429 (623)
Q Consensus 378 --a~~G~~vp~~~~-~~l--~~---------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~ 429 (623)
.+...|+|+... ..+ ++ +..++..+|+. +..++.+.+||+||+ |++++++++
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~ 161 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILA 161 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 112247777531 111 11 12345677886 567889999999999 799999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
.+|+++||||||+|||+.....+.. ++..+.+ .|.|+|++||+.+ +..+|+++..+.+|++...
T Consensus 162 ~~p~illlDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~ 227 (286)
T PRK13646 162 MNPDIIVLDEPTAGLDPQSKRQVMR-LLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQ 227 (286)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999 5555654 5889999999988 5679999999999998765
No 171
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.1e-24 Score=235.48 Aligned_cols=165 Identities=16% Similarity=0.111 Sum_probs=128.6
Q ss_pred EceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------------hhhce
Q 006974 329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGL 382 (623)
Q Consensus 329 ~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------------a~~G~ 382 (623)
..++.+.|+...+ ++||++.+| ++++|+||||||||||||+| |++.+. .+...
T Consensus 31 ~~~~~~~~~~~~~L~~isl~i~~G-ei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~ig 109 (400)
T PRK10070 31 KEQILEKTGLSLGVKDASLAIEEG-EIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIA 109 (400)
T ss_pred HHHHHhhcCCeEEEEeEEEEEcCC-CEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEE
Confidence 3344444443323 999999999 99999999999999999999 776431 01235
Q ss_pred eecCCCCC--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEe
Q 006974 383 YLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (623)
Q Consensus 383 ~vp~~~~~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLD 438 (623)
|+|+.... .+++ ++.++..+|+.+..++.+++|||||+ |+.++++++.+|+++|||
T Consensus 110 yv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLD 189 (400)
T PRK10070 110 MVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMD 189 (400)
T ss_pred EEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 77876421 1122 12346677888888999999999999 899999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 439 Ep~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|||+|||+..+..+...+.+...+.+.|+|++||+.+ +..+|+++..+.+|++...
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~ 246 (400)
T PRK10070 190 EAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQV 246 (400)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999555433345889999999987 5679999999999998654
No 172
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.3e-24 Score=230.29 Aligned_cols=167 Identities=21% Similarity=0.180 Sum_probs=134.2
Q ss_pred cEEEceeeeecCCc----c-c-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh------------------h---
Q 006974 326 EMTVGSLSKGISDF----P-V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------M--- 377 (623)
Q Consensus 326 ~l~~~~l~~~y~~~----~-v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~------------------~--- 377 (623)
.++++||++.|++. . + ++||++.+| ++++|+||||||||||+++| |++.. +
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~G-e~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~ 81 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQG-EVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCC-CEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence 47899999999752 2 3 999999999 99999999999999999999 87641 0
Q ss_pred --h----hhceeecCCCCC----CccH----------------------HHHHHHHcCCc---hhhhcccccccHHHH-H
Q 006974 378 --S----KAGLYLPAKNHP----RLPW----------------------FDLILADIGDH---QSLEQNLSTFSGHIS-R 421 (623)
Q Consensus 378 --a----~~G~~vp~~~~~----~l~~----------------------~d~i~~~ig~~---~~~~~~~stfS~g~~-r 421 (623)
. +...|+|++... .+.+ +.+++..+|+. ..+++.++.|||||+ |
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QR 161 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQR 161 (326)
T ss_pred HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHH
Confidence 0 124578887421 1111 12345667775 346789999999999 8
Q ss_pred HHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhH-HhhccccceeeCceEEEe
Q 006974 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (623)
Q Consensus 422 l~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l-~~~~~~~~~i~~g~~~~~ 494 (623)
++++++++.+|++||+||||+|||+.....+... +..+.+ .|.++|++|||+++ ..+||++.++.+|++...
T Consensus 162 v~iArAL~~~P~llilDEPts~LD~~~~~~il~l-L~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 162 VMIAMAIACRPKLLIADEPTTALDVTIQAQIIEL-LLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999994 555554 58899999999985 579999999999998755
No 173
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.92 E-value=6.1e-25 Score=246.53 Aligned_cols=167 Identities=20% Similarity=0.255 Sum_probs=137.2
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------h-hhce
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------S-KAGL 382 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a-~~G~ 382 (623)
.++++|++++|++..+ ++||++.+| ++++|+||||||||||||+| |++.+. . ....
T Consensus 11 ~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 89 (510)
T PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHAG-EVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIY 89 (510)
T ss_pred eEEEEeEEEEeCCceeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEE
Confidence 5889999999987665 999999999 99999999999999999999 776431 0 1124
Q ss_pred eecCCCC--CCccH-----------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCC
Q 006974 383 YLPAKNH--PRLPW-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (623)
Q Consensus 383 ~vp~~~~--~~l~~-----------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~ 442 (623)
|+|+... ..+++ +..++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+
T Consensus 90 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~ 169 (510)
T PRK15439 90 LVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTA 169 (510)
T ss_pred EEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 7777642 11122 22346677887778899999999999 8999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 443 GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 443 glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|||+.....+.. ++..+.+.|.++|++||+.+ +..+|++++.+.+|++...
T Consensus 170 ~LD~~~~~~l~~-~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~ 221 (510)
T PRK15439 170 SLTPAETERLFS-RIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALS 221 (510)
T ss_pred CCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999 55556667889999999987 5689999999999988653
No 174
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.2e-24 Score=229.72 Aligned_cols=168 Identities=16% Similarity=0.156 Sum_probs=135.1
Q ss_pred CcEEEceeeeecCCc-----cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------
Q 006974 325 SEMTVGSLSKGISDF-----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------- 377 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~-----~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------- 377 (623)
..++++||++.|++. .+ ++||++.+| ++++|+||||||||||+|++ |+..+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~G-e~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKN-KIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 578999999999742 23 999999999 99999999999999999999 665321
Q ss_pred ----------------hhhceeecCCCCC-Cc--cH---------------------HHHHHHHcCCc-hhhhccccccc
Q 006974 378 ----------------SKAGLYLPAKNHP-RL--PW---------------------FDLILADIGDH-QSLEQNLSTFS 416 (623)
Q Consensus 378 ----------------a~~G~~vp~~~~~-~l--~~---------------------~d~i~~~ig~~-~~~~~~~stfS 416 (623)
.+...|+|+.... .+ ++ +..++..+|+. +..++.+.+||
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS 178 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLS 178 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCC
Confidence 0112467765310 11 11 12345667775 56788999999
Q ss_pred HHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 417 GHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 417 ~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
||++ |++++++++.+|+++||||||+|||+.....+.. ++..+.+++.|+|++||+++ +..+|++++.+.+|++..+
T Consensus 179 gGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~-~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~ 257 (320)
T PRK13631 179 GGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQ-LILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKT 257 (320)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999 8999999999999999999999999999999999 55556666889999999998 5689999999999998765
No 175
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.8e-24 Score=220.72 Aligned_cols=166 Identities=16% Similarity=0.240 Sum_probs=130.9
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------------h
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------S 378 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------------a 378 (623)
.++++||++.|++..+ ++||++.+| ++++|+||||||||||+++| |+..+. .
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDN-TITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 3788999999987655 999999999 99999999999999999999 776420 0
Q ss_pred hhceeecCCCC--CCccHHHH-----------------------HHHHcCCc----hhhhcccccccHHHH-HHHHHHHh
Q 006974 379 KAGLYLPAKNH--PRLPWFDL-----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (623)
Q Consensus 379 ~~G~~vp~~~~--~~l~~~d~-----------------------i~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~l 428 (623)
....|+|+... ..+++.++ ++..+|+. ...++.+.+||+||+ |+++++++
T Consensus 82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 161 (250)
T PRK14247 82 RRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARAL 161 (250)
T ss_pred ccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHH
Confidence 11246776642 12233332 23344543 245788899999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+.+|+++||||||+|+|+.....+...+ ..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 162 ~~~p~lllLDEP~~~LD~~~~~~l~~~l-~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 226 (250)
T PRK14247 162 AFQPEVLLADEPTANLDPENTAKIESLF-LELKK-DMTIVLVTHFPQQAARISDYVAFLYKGQIVEW 226 (250)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhc-CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEE
Confidence 9999999999999999999999999954 44554 789999999988 5579999999999988654
No 176
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=8.6e-25 Score=245.17 Aligned_cols=166 Identities=16% Similarity=0.175 Sum_probs=135.4
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh--h--------------------hhh
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--M--------------------SKA 380 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~--~--------------------a~~ 380 (623)
+++++||+++|++..+ ++||++.+| ++++|+||||||||||||++ |++.+ . .+.
T Consensus 5 ~l~~~nl~~~~~~~~il~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (506)
T PRK13549 5 LLEMKNITKTFGGVKALDNVSLKVRAG-EIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG 83 (506)
T ss_pred eEEEeeeEEEeCCeEeecceeEEEeCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence 5889999999987665 999999999 99999999999999999999 77653 0 011
Q ss_pred ceeecCCCC--CCccH------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCc
Q 006974 381 GLYLPAKNH--PRLPW------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES 433 (623)
Q Consensus 381 G~~vp~~~~--~~l~~------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~ 433 (623)
..|+|+... ..+++ +..++..+|+.+..++.+++|||||+ |+++|++++.+|+
T Consensus 84 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ 163 (506)
T PRK13549 84 IAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQAR 163 (506)
T ss_pred eEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCC
Confidence 346776531 11111 23356667777777889999999999 8999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (623)
Q Consensus 434 LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~ 493 (623)
++||||||+|||+.....+.. ++..+.+++.++|++||+.+ +..+||+++.+.+|++..
T Consensus 164 lllLDEPt~~LD~~~~~~l~~-~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~ 223 (506)
T PRK13549 164 LLILDEPTASLTESETAVLLD-IIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIG 223 (506)
T ss_pred EEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEee
Confidence 999999999999999999999 55556667889999999987 567899999999998754
No 177
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.92 E-value=1.1e-24 Score=224.41 Aligned_cols=168 Identities=16% Similarity=0.172 Sum_probs=132.4
Q ss_pred cEEEceeeeecCC---------ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------
Q 006974 326 EMTVGSLSKGISD---------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------- 377 (623)
Q Consensus 326 ~l~~~~l~~~y~~---------~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------- 377 (623)
+++++||++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |+..+.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~ 80 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEG-ETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDR 80 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCH
Confidence 4788999999952 334 999999999 99999999999999999999 665421
Q ss_pred ------hhhceeecCCCC----CCccH----------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHH
Q 006974 378 ------SKAGLYLPAKNH----PRLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIV 423 (623)
Q Consensus 378 ------a~~G~~vp~~~~----~~l~~----------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~ 423 (623)
.+...|+|+... ..+++ +..++..+|+. ...++.+..||+||+ |++
T Consensus 81 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~ 160 (265)
T TIGR02769 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRIN 160 (265)
T ss_pred HHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHH
Confidence 112457777631 11121 12345667775 567889999999999 799
Q ss_pred HHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 424 ~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
++++++.+|+++||||||+|||+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 161 laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 161 IARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999555443344889999999988 4568999999999988654
No 178
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.92 E-value=1.7e-24 Score=221.46 Aligned_cols=168 Identities=20% Similarity=0.183 Sum_probs=133.2
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------------
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------- 377 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------------- 377 (623)
+++++||++.|++..+ ++||++.+| ++++|+||||||||||||++ |+..+.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 3 LLQVSGLSKSYGGGKGCRDVSFDLYPG-EVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred eEEEeeeEEEeCCceEeecceEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 5789999999986555 999999999 99999999999999999999 664320
Q ss_pred ---hhhceeecCCCC----CCccH----------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHH
Q 006974 378 ---SKAGLYLPAKNH----PRLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDIL 426 (623)
Q Consensus 378 ---a~~G~~vp~~~~----~~l~~----------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~ 426 (623)
.+...|+|+... ..+.. ++.++..+|+. ...++.++.||+||+ |+++++
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lar 161 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIAR 161 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHH
Confidence 011246666531 01111 12335666775 467889999999999 899999
Q ss_pred HhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 427 ~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+++.+|+++||||||+|||+.....+...+.+...+.+.++|++||+.+ +..+|++++.+.+|++...
T Consensus 162 al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~ 230 (253)
T TIGR02323 162 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVES 230 (253)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEE
Confidence 9999999999999999999999999999555544445889999999988 4568999999999988654
No 179
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.92 E-value=7.4e-25 Score=221.94 Aligned_cols=159 Identities=19% Similarity=0.256 Sum_probs=123.0
Q ss_pred eecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhhceeecCC-CC--
Q 006974 334 KGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLPAK-NH-- 389 (623)
Q Consensus 334 ~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~G~~vp~~-~~-- 389 (623)
+.|+...+ ++||++.+| ++++|+||||||||||||+| |++.+. .+...|+|+. ..
T Consensus 29 ~~~~~~~il~~vs~~i~~G-e~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (236)
T cd03267 29 RKYREVEALKGISFTIEKG-EIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW 107 (236)
T ss_pred cccCCeeeeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccC
Confidence 44555555 999999999 99999999999999999999 765431 1122356532 11
Q ss_pred CCccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHH
Q 006974 390 PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (623)
Q Consensus 390 ~~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~ 447 (623)
..++.. ..++..+|+.+..++.+.+||+||+ |+.++++++.+|+++||||||+|||+.
T Consensus 108 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 187 (236)
T cd03267 108 WDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVV 187 (236)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 111111 2235566777778889999999999 799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974 448 EGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (623)
Q Consensus 448 ~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~ 493 (623)
....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|++..
T Consensus 188 ~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 234 (236)
T cd03267 188 AQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLY 234 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 9999999555433445789999999988 568999999999998754
No 180
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.5e-24 Score=220.97 Aligned_cols=168 Identities=20% Similarity=0.238 Sum_probs=131.1
Q ss_pred CCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh--h----h----------------
Q 006974 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--M----S---------------- 378 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~--~----a---------------- 378 (623)
+-+++++|+++.|++..+ ++||++.+| ++++|+|||||||||||++| |++.+ . .
T Consensus 10 ~~~l~i~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 10 QEVYQINGMNLWYGQHHALKNINLSIPEN-EVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred CceEEEeeEEEEECCeeeEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 446899999999987655 999999999 99999999999999999999 76531 0 0
Q ss_pred ----hhceeecCCCCC-CccHHH----------------------HHHHHcCCc----hhhhcccccccHHHH-HHHHHH
Q 006974 379 ----KAGLYLPAKNHP-RLPWFD----------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDIL 426 (623)
Q Consensus 379 ----~~G~~vp~~~~~-~l~~~d----------------------~i~~~ig~~----~~~~~~~stfS~g~~-rl~~~~ 426 (623)
+...|+|+.... ....++ .++..+|+. +.+++.+++||+||+ |+++++
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~lar 168 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIAR 168 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHH
Confidence 112466665311 001111 223445543 345778899999999 899999
Q ss_pred HhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 427 ~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+++.+|+++||||||+|||+.....+... +..+.+ +.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus 169 al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~ 235 (259)
T PRK14274 169 ALATNPDVLLMDEPTSALDPVSTRKIEEL-ILKLKE-KYTIVIVTHNMQQAARVSDQTAFFYMGELVEC 235 (259)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHhc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999984 445555 689999999987 5679999999999998754
No 181
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.92 E-value=1.3e-24 Score=232.86 Aligned_cols=162 Identities=21% Similarity=0.242 Sum_probs=131.5
Q ss_pred eeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------------hhhceeecC
Q 006974 331 SLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGLYLPA 386 (623)
Q Consensus 331 ~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------------a~~G~~vp~ 386 (623)
||+++|++..+++||++.+| ++++|+||||||||||||+| |+..+. .+...|+|+
T Consensus 4 ~l~~~~~~~~~~isl~i~~G-ei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q 82 (354)
T TIGR02142 4 RFSKRLGDFSLDADFTLPGQ-GVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQ 82 (354)
T ss_pred EEEEEECCEEEEEEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEec
Confidence 78999987666999999999 99999999999999999999 776431 011246676
Q ss_pred CCC--CCccH-------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCC
Q 006974 387 KNH--PRLPW-------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (623)
Q Consensus 387 ~~~--~~l~~-------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~gl 444 (623)
... ..+++ ++.++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+||
T Consensus 83 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 83 EARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred CCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 531 11122 23456677888888999999999999 899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 445 DPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 445 D~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|+.....+...+. .+.+ .+.|+|++||+.+ +..+||++..+.+|++...
T Consensus 163 D~~~~~~l~~~L~-~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~ 213 (354)
T TIGR02142 163 DDPRKYEILPYLE-RLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAA 213 (354)
T ss_pred CHHHHHHHHHHHH-HHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEE
Confidence 9999999999554 4554 4789999999987 5678999999999998654
No 182
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.7e-24 Score=219.51 Aligned_cols=166 Identities=20% Similarity=0.235 Sum_probs=129.6
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhh---hh-------------h---------
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA---SL-------------M--------- 377 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~---~~-------------~--------- 377 (623)
+++++|+++.|++..+ ++||++.+| ++++|+||||||||||+|++ |+. .. .
T Consensus 3 ~l~~~~~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 3 KIDARDVNFWYGDFHALKGISMEIEEK-SVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred EEEEEEEEEEECCEeEEeeeeEEEeCC-CEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 5789999999987655 999999999 99999999999999999999 552 11 0
Q ss_pred -hhhceeecCCCCC-CccHH----------------------HHHHHHcCCc----hhhhcccccccHHHH-HHHHHHHh
Q 006974 378 -SKAGLYLPAKNHP-RLPWF----------------------DLILADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (623)
Q Consensus 378 -a~~G~~vp~~~~~-~l~~~----------------------d~i~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~l 428 (623)
.+...|+|+.... ..++. +.++..+|+. +..++.+.+||+||+ |+++++++
T Consensus 82 ~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14245 82 LRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAM 161 (250)
T ss_pred HhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHH
Confidence 0123567765311 01111 2234445553 345678889999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+.+|+++||||||+|||+.....+...+. .+.+ ++++|++||+.+ +..+|++++.+.+|++...
T Consensus 162 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~ 226 (250)
T PRK14245 162 AVSPSVLLMDEPASALDPISTAKVEELIH-ELKK-DYTIVIVTHNMQQAARVSDKTAFFYMGEMVEY 226 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHH-HHhc-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999544 4554 689999999987 5689999999999988654
No 183
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.92 E-value=8e-25 Score=216.34 Aligned_cols=157 Identities=22% Similarity=0.276 Sum_probs=123.6
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhhceeec
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP 385 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~G~~vp 385 (623)
++++||++.|++..+ ++||++.+| ++++|+||||+|||||++++ |+..+. .+...|+|
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAG-EALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence 367899999987655 999999999 99999999999999999999 665421 11224566
Q ss_pred CCCCC--CccH---------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHH
Q 006974 386 AKNHP--RLPW---------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (623)
Q Consensus 386 ~~~~~--~l~~---------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~ 447 (623)
+.... ..+. ++.++..+|+....++.+.+||+||+ |++++++++.+|+++||||||+|+|+.
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 159 (201)
T cd03231 80 HAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKA 159 (201)
T ss_pred cccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 54311 1122 23456677887778889999999999 799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccce
Q 006974 448 EGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTR 485 (623)
Q Consensus 448 ~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~ 485 (623)
....+...+ ..+.+.+.|+|++||+.. +..++++...
T Consensus 160 ~~~~l~~~l-~~~~~~g~tiii~sH~~~~~~~~~~~~~~ 197 (201)
T cd03231 160 GVARFAEAM-AGHCARGGMVVLTTHQDLGLSEAGARELD 197 (201)
T ss_pred HHHHHHHHH-HHHHhCCCEEEEEecCchhhhhccceeEe
Confidence 999999954 445666889999999865 6667766543
No 184
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.5e-24 Score=222.04 Aligned_cols=168 Identities=17% Similarity=0.211 Sum_probs=132.1
Q ss_pred CCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-----h------------------
Q 006974 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M------------------ 377 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-----~------------------ 377 (623)
.+.++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+ .
T Consensus 17 ~~~l~~~nl~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 17 EIKMRARDVSVFYGEKQALFDVDLDIPEK-TVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred CceEEEEeEEEEECCEEEEEEEEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 357999999999987655 999999999 99999999999999999999 77642 1
Q ss_pred ---hhhceeecCCCCCC-ccHHH-----------------------HHHHHcCCch----hhhcccccccHHHH-HHHHH
Q 006974 378 ---SKAGLYLPAKNHPR-LPWFD-----------------------LILADIGDHQ----SLEQNLSTFSGHIS-RIVDI 425 (623)
Q Consensus 378 ---a~~G~~vp~~~~~~-l~~~d-----------------------~i~~~ig~~~----~~~~~~stfS~g~~-rl~~~ 425 (623)
.+...|+|+..... .+..+ .++..+|+.+ ..++.+.+||+||+ |++++
T Consensus 96 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 175 (267)
T PRK14235 96 VELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIA 175 (267)
T ss_pred HHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHH
Confidence 01124666653110 12222 2344455532 35678899999999 89999
Q ss_pred HHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 426 ~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
++++.+|+++||||||+|||+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~l~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~ 243 (267)
T PRK14235 176 RAIAVSPEVILMDEPCSALDPIATAKVEE-LIDELRQ-NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEV 243 (267)
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHhc-CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999 4555655 679999999988 5578999999999988654
No 185
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.92 E-value=1.5e-24 Score=211.14 Aligned_cols=151 Identities=21% Similarity=0.187 Sum_probs=115.5
Q ss_pred CcEEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--------------------hhcee
Q 006974 325 SEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------------------KAGLY 383 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--------------------~~G~~ 383 (623)
.+++++|++++| ..-+++|++.+| ++++|+||||||||||||++ |+..+.+ +...|
T Consensus 3 ~~l~~~~l~~~~--~l~~vs~~i~~G-~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (182)
T cd03215 3 PVLEVRGLSVKG--AVRDVSFEVRAG-EIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAY 79 (182)
T ss_pred cEEEEeccEEEe--eecceEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEE
Confidence 368899999999 222999999999 99999999999999999999 5543210 11234
Q ss_pred ecCCC-----CCCccHHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 006974 384 LPAKN-----HPRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSIL 457 (623)
Q Consensus 384 vp~~~-----~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all 457 (623)
+|++. ...++..+++.... .||+||+ |++++++++.+|+++|||||++|+|+.....+...+
T Consensus 80 ~~q~~~~~~~~~~~t~~e~l~~~~-----------~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l- 147 (182)
T cd03215 80 VPEDRKREGLVLDLSVAENIALSS-----------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLI- 147 (182)
T ss_pred ecCCcccCcccCCCcHHHHHHHHh-----------hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHH-
Confidence 44431 01122333321100 1999999 799999999999999999999999999999999954
Q ss_pred HHHhcCCcEEEEEcCchh-HHhhccccceeeCce
Q 006974 458 QYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAA 490 (623)
Q Consensus 458 ~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~ 490 (623)
..+.+.+.|+|++||+.+ +..+|++++.+.+|+
T Consensus 148 ~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~ 181 (182)
T cd03215 148 RELADAGKAVLLISSELDELLGLCDRILVMYEGR 181 (182)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCc
Confidence 455656889999999986 778899998888875
No 186
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=1e-24 Score=216.58 Aligned_cols=158 Identities=20% Similarity=0.222 Sum_probs=122.4
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------hhhceeecC
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------SKAGLYLPA 386 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------a~~G~~vp~ 386 (623)
+++++||++.|++..+ ++||++.+| ++++|+||||||||||++++ |+..+- .....|+|+
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAG-EALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGH 80 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecC
Confidence 4788999999987655 999999999 99999999999999999999 665321 011235554
Q ss_pred CCC--CCccH-----------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCH
Q 006974 387 KNH--PRLPW-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP 446 (623)
Q Consensus 387 ~~~--~~l~~-----------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~ 446 (623)
... ...++ +..++..+|+.+..++.+.+||+||+ |+.++++++.+|+++||||||+|+|+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 160 (207)
T PRK13539 81 RNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDA 160 (207)
T ss_pred CCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 321 11122 23345667777777889999999999 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcccccee
Q 006974 447 SEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF 486 (623)
Q Consensus 447 ~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i 486 (623)
.....+... +..+.+++.|+|++||+.+...- ++++.+
T Consensus 161 ~~~~~l~~~-l~~~~~~~~tiii~sH~~~~~~~-~~~~~~ 198 (207)
T PRK13539 161 AAVALFAEL-IRAHLAQGGIVIAATHIPLGLPG-ARELDL 198 (207)
T ss_pred HHHHHHHHH-HHHHHHCCCEEEEEeCCchhhcc-CcEEee
Confidence 999999984 44556668899999999875433 555444
No 187
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.6e-24 Score=218.09 Aligned_cols=166 Identities=15% Similarity=0.158 Sum_probs=126.2
Q ss_pred cEEEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhce
Q 006974 326 EMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 382 (623)
Q Consensus 326 ~l~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~ 382 (623)
.++++|+++.|++ ..+ ++||++.+| ++++|+||||||||||||++ |++.+. .....
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G-~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPG-ETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIG 80 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEE
Confidence 4789999999974 334 999999999 99999999999999999999 665421 11234
Q ss_pred eecCCCCC-CccHHHH---------------HHHHcCCc-----------hhhhcccccccHHHH-HHHHHHHhcCCCcE
Q 006974 383 YLPAKNHP-RLPWFDL---------------ILADIGDH-----------QSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (623)
Q Consensus 383 ~vp~~~~~-~l~~~d~---------------i~~~ig~~-----------~~~~~~~stfS~g~~-rl~~~~~l~~~~~L 434 (623)
|+|+.... ..++.++ .+..++.. ....+.+..||+||+ |+.++++++.+|++
T Consensus 81 ~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l 160 (229)
T cd03254 81 VVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160 (229)
T ss_pred EecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 66765310 0011111 12222322 233455689999999 89999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 435 lLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
+||||||+|||+.....+...+ ..+.+ +.|+|++||+.+....|++++.+.+|++...
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l-~~~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~ 218 (229)
T cd03254 161 LILDEATSNIDTETEKLIQEAL-EKLMK-GRTSIIIAHRLSTIKNADKILVLDDGKIIEE 218 (229)
T ss_pred EEEeCccccCCHHHHHHHHHHH-HHhcC-CCEEEEEecCHHHHhhCCEEEEEeCCeEEEe
Confidence 9999999999999999999954 45554 7899999999886567999999999988654
No 188
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.9e-24 Score=219.25 Aligned_cols=166 Identities=24% Similarity=0.313 Sum_probs=129.5
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------------
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------- 377 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------------- 377 (623)
.++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEEN-QVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQ 81 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHH
Confidence 5789999999987555 999999999 99999999999999999999 754310
Q ss_pred -hhhceeecCCCCC-CccHHHHH----------------------HHHcCCc----hhhhcccccccHHHH-HHHHHHHh
Q 006974 378 -SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (623)
Q Consensus 378 -a~~G~~vp~~~~~-~l~~~d~i----------------------~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~l 428 (623)
.+...|+|+.... ..+..+++ +..++.. +..++.+.+||+||+ |+++++++
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14240 82 LRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARAL 161 (250)
T ss_pred HhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 0113466765321 12233322 2233322 234678899999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+.+|+++||||||+|||+.....+...+ ..+.+ +.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l-~~~~~-~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~ 226 (250)
T PRK14240 162 AVEPEVLLMDEPTSALDPISTLKIEELI-QELKK-DYTIVIVTHNMQQASRISDKTAFFLNGEIVEF 226 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHhc-CCeEEEEEeCHHHHHhhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999854 44554 689999999988 6788999999999998755
No 189
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.92 E-value=8.7e-25 Score=244.86 Aligned_cols=166 Identities=18% Similarity=0.175 Sum_probs=135.3
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhce
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGL 382 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G~ 382 (623)
+++++|++++|++..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+...
T Consensus 4 ~i~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 82 (501)
T PRK10762 4 LLQLKGIDKAFPGVKALSGAALNVYPG-RVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG 82 (501)
T ss_pred eEEEeeeEEEeCCeEEeeeeeEEEcCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 5789999999987655 999999999 99999999999999999999 665431 11124
Q ss_pred eecCCCC--CCccH-------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcE
Q 006974 383 YLPAKNH--PRLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (623)
Q Consensus 383 ~vp~~~~--~~l~~-------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~L 434 (623)
|+|+... ..+++ +..++..+|+.+..++.+++|||||+ |+++|++++.+|++
T Consensus 83 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 162 (501)
T PRK10762 83 IIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKV 162 (501)
T ss_pred EEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 6776531 01111 22346667777777889999999999 89999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (623)
Q Consensus 435 lLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~ 493 (623)
+||||||+|||+.....+.. ++..+.+.+.|+|++||+.+ +..+||+++.+.+|++..
T Consensus 163 llLDEPt~~LD~~~~~~l~~-~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~ 221 (501)
T PRK10762 163 IIMDEPTDALTDTETESLFR-VIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIA 221 (501)
T ss_pred EEEeCCcCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999 55566667889999999987 668999999999998754
No 190
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.4e-24 Score=220.32 Aligned_cols=166 Identities=20% Similarity=0.209 Sum_probs=130.1
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------h------------------
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------S------------------ 378 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------a------------------ 378 (623)
.++++||++.|++..+ +++|++.+| ++++|+||||||||||+|++ |++.+- +
T Consensus 4 ~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 4 AIETVNLRVYYGSNHVIKGVDLKIPQN-GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred eEEEEeEEEEeCCeeeeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 4789999999987655 999999999 99999999999999999999 775431 0
Q ss_pred --hhceeecCCCCC--CccHHHH-----------------------HHHHcCCc----hhhhcccccccHHHH-HHHHHH
Q 006974 379 --KAGLYLPAKNHP--RLPWFDL-----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDIL 426 (623)
Q Consensus 379 --~~G~~vp~~~~~--~l~~~d~-----------------------i~~~ig~~----~~~~~~~stfS~g~~-rl~~~~ 426 (623)
+...|+|+.... .+++.++ ++..+|+. ...++.+.+||+|++ |+++++
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 162 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIAR 162 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHH
Confidence 112466665311 1222222 23344442 345678899999999 899999
Q ss_pred HhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 427 ~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+++.+|+++||||||+|||+.....+...+. .+.+ +.|+|++||+.+ +..+||++..+.+|++...
T Consensus 163 al~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 229 (253)
T PRK14267 163 ALAMKPKILLMDEPTANIDPVGTAKIEELLF-ELKK-EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEV 229 (253)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhh-CCEEEEEECCHHHHHhhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999554 4554 589999999988 5679999999999998754
No 191
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=6.5e-25 Score=212.83 Aligned_cols=153 Identities=24% Similarity=0.348 Sum_probs=112.1
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCC--------ccH-H
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPR--------LPW-F 395 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~--------l~~-~ 395 (623)
++++|+++.|++..+ +++|++.+| ++++|+||||||||||+|++ .|.+.|.+|... .+. .
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~G-~~~~i~G~nGsGKSTLl~~l--------~G~~~~~~G~i~~~g~~~~~~~~~~ 71 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAG-EIVALLGPSGSGKSTLLRCI--------AGLEEPDSGSILIDGEDLTDLEDEL 71 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcCC-CEEEEECCCCCCHHHHHHHH--------hCCCCCCceEEEECCEEccccchhH
Confidence 357899999987655 999999999 99999999999999999999 333333322110 000 0
Q ss_pred HHHHHHcC---------Cchhhhccccc-ccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-
Q 006974 396 DLILADIG---------DHQSLEQNLST-FSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR- 463 (623)
Q Consensus 396 d~i~~~ig---------~~~~~~~~~st-fS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~- 463 (623)
......++ ....+...+.. ||+||+ |+.++++++.+|+++||||||+|+|+.....+.. ++..++++
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~-~l~~~~~~~ 150 (178)
T cd03229 72 PPLRRRIGMVFQDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRA-LLKSLQAQL 150 (178)
T ss_pred HHHhhcEEEEecCCccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhc
Confidence 01111111 00112222222 999999 8999999999999999999999999999999999 45556665
Q ss_pred CcEEEEEcCchh-HHhhccccceeeCc
Q 006974 464 VGLAVVTTHYAD-LSCLKDKDTRFENA 489 (623)
Q Consensus 464 ~~~vii~TH~~~-l~~~~~~~~~i~~g 489 (623)
+.|+|++||+.+ +..+|+++..+.+|
T Consensus 151 ~~tiii~sH~~~~~~~~~d~i~~l~~g 177 (178)
T cd03229 151 GITVVLVTHDLDEAARLADRVVVLRDG 177 (178)
T ss_pred CCEEEEEeCCHHHHHHhcCEEEEEeCC
Confidence 789999999987 45589998888776
No 192
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=6.3e-24 Score=243.80 Aligned_cols=164 Identities=21% Similarity=0.197 Sum_probs=127.7
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhh--------hceeecCCCCC----C
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK--------AGLYLPAKNHP----R 391 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~--------~G~~vp~~~~~----~ 391 (623)
|.++||+++||++.+ ++||+|.+| ++++|+||||||||||||+| |++.+... ...|+|+.... .
T Consensus 2 i~i~nls~~~g~~~~l~~vs~~i~~G-e~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~ 80 (638)
T PRK10636 2 IVFSSLQIRRGVRVLLDNATATINPG-QKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPA 80 (638)
T ss_pred EEEEEEEEEeCCceeecCcEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCH
Confidence 678999999998766 999999999 99999999999999999999 76544210 01234442100 0
Q ss_pred ccH---------------------------------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHH
Q 006974 392 LPW---------------------------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVD 424 (623)
Q Consensus 392 l~~---------------------------------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~ 424 (623)
+.+ +..++..+|+. +..++++++|||||+ |+++
T Consensus 81 ~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~L 160 (638)
T PRK10636 81 LEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNL 160 (638)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHH
Confidence 000 11234556665 467889999999999 8999
Q ss_pred HHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEec
Q 006974 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (623)
Q Consensus 425 ~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~~ 495 (623)
+++++.+|++|||||||+|||+.....|...+. +.+++||++|||.+ +..+|++++.+.+|++....
T Consensus 161 A~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~----~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~ 228 (638)
T PRK10636 161 AQALICRSDLLLLDEPTNHLDLDAVIWLEKWLK----SYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYT 228 (638)
T ss_pred HHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHH----hCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEec
Confidence 999999999999999999999999988777333 33679999999988 66899999999999886543
No 193
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.1e-24 Score=219.38 Aligned_cols=167 Identities=16% Similarity=0.257 Sum_probs=130.8
Q ss_pred CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh--h--------------h--------
Q 006974 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS--L--------------M-------- 377 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~--~--------------~-------- 377 (623)
+.++++|++++|++..+ ++||++.+| ++++|+||||||||||||++ |+.. + .
T Consensus 3 ~~l~~~nl~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 3 NKVKLEQLNVHFGKNHAVKDVSMDFPEN-SVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred cEEEEEEEEEEeCCeeEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 56899999999987655 999999999 99999999999999999999 7753 1 0
Q ss_pred --hhhceeecCCCC--CCccHHH----------------------HHHHHcCCc----hhhhcccccccHHHH-HHHHHH
Q 006974 378 --SKAGLYLPAKNH--PRLPWFD----------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDIL 426 (623)
Q Consensus 378 --a~~G~~vp~~~~--~~l~~~d----------------------~i~~~ig~~----~~~~~~~stfS~g~~-rl~~~~ 426 (623)
.+...|+|+... ...++.+ .++..+|+. +..++.+.+||+||+ |+++++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lar 161 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIAR 161 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHH
Confidence 011346777632 1112222 223345543 345677899999999 799999
Q ss_pred HhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 427 ~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+++.+|+++||||||+|+|+.....+.. +++.+.+ +.|+|++||+.+ +..+|+++..+.+|++...
T Consensus 162 al~~~p~llllDEP~~gLD~~~~~~l~~-~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14256 162 TIAVKPEVILMDEPASALDPISTLKIEE-LIEELKE-KYTIIIVTHNMQQAARVSDYTAFFYMGDLVEC 228 (252)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHh-CCcEEEEECCHHHHHhhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999 4555665 579999999988 5689999999999988654
No 194
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.1e-24 Score=223.59 Aligned_cols=169 Identities=20% Similarity=0.232 Sum_probs=131.6
Q ss_pred CCCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh--h---h-----------------
Q 006974 323 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS--L---M----------------- 377 (623)
Q Consensus 323 g~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~--~---~----------------- 377 (623)
|+.+++++||+++|++..+ +++|++.+| ++++|+|||||||||||++| |+.. + .
T Consensus 36 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFEAVKKVNADILSK-YVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred CceEEEEeeeEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 4457899999999987555 999999999 99999999999999999999 7642 1 0
Q ss_pred ----hhhceeecCCCCCC-ccHHH----------------------HHHHHcCC----chhhhcccccccHHHH-HHHHH
Q 006974 378 ----SKAGLYLPAKNHPR-LPWFD----------------------LILADIGD----HQSLEQNLSTFSGHIS-RIVDI 425 (623)
Q Consensus 378 ----a~~G~~vp~~~~~~-l~~~d----------------------~i~~~ig~----~~~~~~~~stfS~g~~-rl~~~ 425 (623)
.+...|+|+..... .++.+ .++..+|+ .+..++.+++||+||+ |+.++
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 194 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVA 194 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHH
Confidence 01224677664211 01111 22334443 3456788999999999 79999
Q ss_pred HHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 426 ~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
++++.+|+++||||||+|||+.....+... +..+.. +.++|++||+.+ +..+|++++.+.+|++...
T Consensus 195 raL~~~p~lllLDEPt~gLD~~~~~~l~~~-L~~~~~-~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~ 262 (286)
T PRK14275 195 RTLAVEPEILLLDEPTSALDPKATAKIEDL-IQELRG-SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEH 262 (286)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999994 445554 579999999988 4678999999999988654
No 195
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.92 E-value=2.1e-24 Score=209.14 Aligned_cols=152 Identities=19% Similarity=0.166 Sum_probs=115.4
Q ss_pred EEEceeeeecCCc--cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------------------hhcee
Q 006974 327 MTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------------------KAGLY 383 (623)
Q Consensus 327 l~~~~l~~~y~~~--~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------------------~~G~~ 383 (623)
++++|+++.|++. .+ ++||++.+| ++++|+||||||||||||++ |+..+.+ +...|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~G-e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQG-EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE
Confidence 3578999999764 34 999999999 99999999999999999999 4433210 01123
Q ss_pred ecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 006974 384 LPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD 462 (623)
Q Consensus 384 vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~ 462 (623)
+|+.. ..++ . .+. +.+ +++||+||+ |+.++++++.+|+++||||||+|||+.....+...+ ..+.
T Consensus 80 ~~q~~-~~~~-~-tv~------~~i---~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l-~~~~- 145 (178)
T cd03247 80 LNQRP-YLFD-T-TLR------NNL---GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI-FEVL- 145 (178)
T ss_pred EccCC-eeec-c-cHH------Hhh---cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHH-HHHc-
Confidence 33321 0000 0 011 111 789999999 799999999999999999999999999999999954 4455
Q ss_pred CCcEEEEEcCchhHHhhccccceeeCceEEE
Q 006974 463 RVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (623)
Q Consensus 463 ~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~ 493 (623)
++.|+|++||+.+....|++...+.+|++..
T Consensus 146 ~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~ 176 (178)
T cd03247 146 KDKTLIWITHHLTGIEHMDKILFLENGKIIM 176 (178)
T ss_pred CCCEEEEEecCHHHHHhCCEEEEEECCEEEe
Confidence 4789999999998666799999999988754
No 196
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.92 E-value=1.9e-24 Score=243.20 Aligned_cols=166 Identities=20% Similarity=0.219 Sum_probs=132.0
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhh--hhh------------------------
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SLM------------------------ 377 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~--~~~------------------------ 377 (623)
++++|++++|++..+ ++||++.+| ++++|+||||||||||||++ |++ .+.
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEG-EVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 468899999987655 999999999 99999999999999999999 775 220
Q ss_pred ----------------------------hhhceeecCCCC---CCccH---------------------HHHHHHHcCCc
Q 006974 378 ----------------------------SKAGLYLPAKNH---PRLPW---------------------FDLILADIGDH 405 (623)
Q Consensus 378 ----------------------------a~~G~~vp~~~~---~~l~~---------------------~d~i~~~ig~~ 405 (623)
.+...|+|+... ..+.. +..++..+|+.
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence 011246666411 11121 12346667787
Q ss_pred hhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhcccc
Q 006974 406 QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKD 483 (623)
Q Consensus 406 ~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~ 483 (623)
+..++.+++|||||+ |+++|++++.+|+++||||||+|||+.....+...+.+...+.|.|||++||+.+ +..+|+++
T Consensus 160 ~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i 239 (520)
T TIGR03269 160 HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKA 239 (520)
T ss_pred hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEE
Confidence 778899999999999 8999999999999999999999999999999999544433455889999999988 56799999
Q ss_pred ceeeCceEEE
Q 006974 484 TRFENAATEF 493 (623)
Q Consensus 484 ~~i~~g~~~~ 493 (623)
+.+.+|++..
T Consensus 240 ~~l~~G~i~~ 249 (520)
T TIGR03269 240 IWLENGEIKE 249 (520)
T ss_pred EEEeCCEEee
Confidence 9999888754
No 197
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.3e-24 Score=228.37 Aligned_cols=168 Identities=15% Similarity=0.092 Sum_probs=134.1
Q ss_pred cEEEceeeeecCC----------ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------
Q 006974 326 EMTVGSLSKGISD----------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------- 377 (623)
Q Consensus 326 ~l~~~~l~~~y~~----------~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------- 377 (623)
+++++||++.|+. ..+ ++||++.+| ++++|+|+||||||||+++| |++.+.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~G-e~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERG-KTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCC-CEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 5889999999962 223 999999999 99999999999999999999 765421
Q ss_pred -------hhhceeecCCCCC----CccH----------------------HHHHHHHcCCc-hhhhcccccccHHHH-HH
Q 006974 378 -------SKAGLYLPAKNHP----RLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RI 422 (623)
Q Consensus 378 -------a~~G~~vp~~~~~----~l~~----------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl 422 (623)
.+...|+|++... .+.. +..++..+|+. +..++.++.|||||+ |+
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv 163 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRI 163 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHH
Confidence 1123577876421 1111 23446677775 467899999999999 89
Q ss_pred HHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHH-hhccccceeeCceEEEe
Q 006974 423 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (623)
Q Consensus 423 ~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~-~~~~~~~~i~~g~~~~~ 494 (623)
+++++++.+|++||+||||+|||+.....+...+.+...+.|.|+|++|||+.+. .+||++.++.+|+++..
T Consensus 164 ~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~ 236 (327)
T PRK11308 164 AIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEK 236 (327)
T ss_pred HHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999955543334588999999999855 68999999999998765
No 198
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.92 E-value=1.6e-24 Score=219.27 Aligned_cols=165 Identities=16% Similarity=0.097 Sum_probs=125.9
Q ss_pred EEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhce
Q 006974 327 MTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 382 (623)
Q Consensus 327 l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~ 382 (623)
++++||++.|++ .++ ++||++.+| ++++|+||||||||||||++ |+..+. .+...
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPG-EVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 357899999963 334 999999999 99999999999999999999 776421 11234
Q ss_pred eecCCCCC-CccHHHHH---------------HHHcC-----------CchhhhcccccccHHHH-HHHHHHHhcCCCcE
Q 006974 383 YLPAKNHP-RLPWFDLI---------------LADIG-----------DHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (623)
Q Consensus 383 ~vp~~~~~-~l~~~d~i---------------~~~ig-----------~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~L 434 (623)
|+|+.... ..++.+++ +...+ ....++..+.+||+||+ |+.++++++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 67776411 11122211 11122 22334567899999999 79999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 435 lLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
+||||||+|||+.....+...+. .+.+ +.|+|++||+.+....|+++..+.+|++...
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~-~~~~-~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~ 217 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMH-DICA-GRTVIIIAHRLSTVKNADRIIVMEKGRIVEQ 217 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHH-HhcC-CCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999554 4554 7899999999986667999999999998755
No 199
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.9e-24 Score=242.58 Aligned_cols=167 Identities=17% Similarity=0.199 Sum_probs=135.9
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------h-hhce
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------S-KAGL 382 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a-~~G~ 382 (623)
+++++|++++|++..+ ++||++.+| ++++|+||||||||||||++ |++.+. . +...
T Consensus 5 ~l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 83 (510)
T PRK09700 5 YISMAGIGKSFGPVHALKSVNLTVYPG-EIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG 83 (510)
T ss_pred eEEEeeeEEEcCCeEEeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE
Confidence 5789999999987665 999999999 99999999999999999999 776421 1 1134
Q ss_pred eecCCCC--CCccH----------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCC
Q 006974 383 YLPAKNH--PRLPW----------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (623)
Q Consensus 383 ~vp~~~~--~~l~~----------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~ 431 (623)
|+|+... ..+++ +..++..+|+.+..++.+++|||||+ |+.++++++.+
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~ 163 (510)
T PRK09700 84 IIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLD 163 (510)
T ss_pred EEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcC
Confidence 6777531 11111 12345667777777889999999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|+++||||||+|||+.....+.. ++..+++.|.|+|++||+.+ +..+|++++.+.+|++.+.
T Consensus 164 p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~ 226 (510)
T PRK09700 164 AKVIIMDEPTSSLTNKEVDYLFL-IMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCS 226 (510)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeee
Confidence 99999999999999999999999 55566767889999999987 5679999999999987653
No 200
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.92 E-value=7.1e-24 Score=235.46 Aligned_cols=168 Identities=20% Similarity=0.230 Sum_probs=134.0
Q ss_pred CCCcEEEceeeeecCCc-cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------h--hceeecCCCCC
Q 006974 323 ENSEMTVGSLSKGISDF-PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------K--AGLYLPAKNHP 390 (623)
Q Consensus 323 g~~~l~~~~l~~~y~~~-~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------~--~G~~vp~~~~~ 390 (623)
|+.+++++|++++|++. .+ +++|.+.+| +.++|+||||+|||||||+| |.+...+ + ...|.+|....
T Consensus 318 g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g-~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~ 396 (530)
T COG0488 318 GKLVLEFENVSKGYDGGRLLLKDLSFRIDRG-DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDE 396 (530)
T ss_pred CCeeEEEeccccccCCCceeecCceEEecCC-CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhh
Confidence 44678999999999664 44 999999999 99999999999999999999 5554331 0 11355554311
Q ss_pred Cc---cH---------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHH
Q 006974 391 RL---PW---------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGV 450 (623)
Q Consensus 391 ~l---~~---------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~ 450 (623)
.. ++ +...+.+++.. +...+++++||||+| |+.++..++.+|++||||||||+||+.+..
T Consensus 397 l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~ 476 (530)
T COG0488 397 LDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLE 476 (530)
T ss_pred cCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHH
Confidence 01 12 22345666653 567899999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEecC
Q 006974 451 ALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSLE 496 (623)
Q Consensus 451 ~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~~~ 496 (623)
+|..++.+| .+|||+||||.+ +..+|++++.+.+ .+....+
T Consensus 477 aLe~aL~~f----~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g 518 (530)
T COG0488 477 ALEEALLDF----EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEG 518 (530)
T ss_pred HHHHHHHhC----CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCC
Confidence 999988887 899999999998 6789999999988 5555544
No 201
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.8e-24 Score=218.60 Aligned_cols=166 Identities=17% Similarity=0.210 Sum_probs=129.5
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh--hh-----------------------
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS--LM----------------------- 377 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~--~~----------------------- 377 (623)
+++++||+++|++..+ +++|++.+| ++++|+|||||||||||+++ |+.. +.
T Consensus 5 ~l~~~~l~~~~~~~~~l~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPN-EITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 5789999999987655 999999999 99999999999999999999 6632 10
Q ss_pred -hhhceeecCCCCC-CccHHHHH----------------------HHHcCC----chhhhcccccccHHHH-HHHHHHHh
Q 006974 378 -SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGD----HQSLEQNLSTFSGHIS-RIVDILEL 428 (623)
Q Consensus 378 -a~~G~~vp~~~~~-~l~~~d~i----------------------~~~ig~----~~~~~~~~stfS~g~~-rl~~~~~l 428 (623)
.+...|+|+.... ..+..+++ +..++. .+..++.+.+||+|++ |+++++++
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 163 (252)
T PRK14239 84 LRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVL 163 (252)
T ss_pred hhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 1123466766421 12333332 223332 1235678899999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+.+|+++||||||+|||+.....+... +..+.+ +.|+|++||+.+ +..+|+++..+.+|++...
T Consensus 164 ~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14239 164 ATSPKIILLDEPTSALDPISAGKIEET-LLGLKD-DYTMLLVTRSMQQASRISDRTGFFLDGDLIEY 228 (252)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHH-HHHHhh-CCeEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999984 445554 589999999987 6789999999999998754
No 202
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.92 E-value=2.6e-24 Score=228.17 Aligned_cols=168 Identities=16% Similarity=0.148 Sum_probs=133.6
Q ss_pred CcEEEceeeeecCC-------------ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------
Q 006974 325 SEMTVGSLSKGISD-------------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------- 377 (623)
Q Consensus 325 ~~l~~~~l~~~y~~-------------~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------- 377 (623)
..++++||++.|+. ..+ ++||++.+| ++++|+|+||||||||+|+| |++.+-
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~G-e~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEG-ETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCC-CEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 35789999999962 223 999999999 99999999999999999999 776421
Q ss_pred -----------hhhceeecCCCC----CCccHHH-----------------------HHHHHcCCc-hhhhcccccccHH
Q 006974 378 -----------SKAGLYLPAKNH----PRLPWFD-----------------------LILADIGDH-QSLEQNLSTFSGH 418 (623)
Q Consensus 378 -----------a~~G~~vp~~~~----~~l~~~d-----------------------~i~~~ig~~-~~~~~~~stfS~g 418 (623)
.....|+|++.. ..+.+.+ .++..+|+. +..++.++.||||
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG 165 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGG 165 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHH
Confidence 112357887641 1222222 235566763 4578999999999
Q ss_pred HH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhH-HhhccccceeeCceEEEe
Q 006974 419 IS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (623)
Q Consensus 419 ~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l-~~~~~~~~~i~~g~~~~~ 494 (623)
|+ |+++|++++.+|++||+||||+|||+..+..+.. ++..+.+ .+.|+|++|||+++ ..+|+++.++.+|+++..
T Consensus 166 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~-lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~ 243 (331)
T PRK15079 166 QCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVN-LLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVEL 243 (331)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99 8999999999999999999999999999999999 4555655 48899999999985 468999999999998754
No 203
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.9e-24 Score=217.91 Aligned_cols=166 Identities=17% Similarity=0.143 Sum_probs=130.9
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh----------------------hhhh
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------------MSKA 380 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~----------------------~a~~ 380 (623)
.++++|+++.|++..+ ++||++.+| ++++|+||||||||||+|++ |++.+ ..+.
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQN-KITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 3678999999987555 999999999 99999999999999999999 76521 0112
Q ss_pred ceeecCCCCC-CccH-----------------------HHHHHHHcCCc----hhhhcccccccHHHH-HHHHHHHhcCC
Q 006974 381 GLYLPAKNHP-RLPW-----------------------FDLILADIGDH----QSLEQNLSTFSGHIS-RIVDILELVSR 431 (623)
Q Consensus 381 G~~vp~~~~~-~l~~-----------------------~d~i~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~l~~~ 431 (623)
..|+|+.... ..++ +..++..+|+. +..++.++.||+|++ |++++++++.+
T Consensus 81 i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 160 (246)
T PRK14269 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK 160 (246)
T ss_pred EEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 3467776411 0111 12345566663 345678899999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|+++||||||+|+|+.....+...+. .+.+ +.|+|++||+.+ +..+||+++.+.+|++...
T Consensus 161 p~lllLDEP~~~LD~~~~~~l~~~l~-~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 222 (246)
T PRK14269 161 PKLLLLDEPTSALDPISSGVIEELLK-ELSH-NLSMIMVTHNMQQGKRVADYTAFFHLGELIEF 222 (246)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHH-HHhC-CCEEEEEecCHHHHHhhCcEEEEEECCEEEEE
Confidence 99999999999999999999988544 4554 789999999988 6679999999999998754
No 204
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.4e-24 Score=220.24 Aligned_cols=167 Identities=17% Similarity=0.219 Sum_probs=131.3
Q ss_pred CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-----h-------------------
Q 006974 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M------------------- 377 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-----~------------------- 377 (623)
.+++++||+++|+++.+ ++||++.+| ++++|+||||||||||||++ |+..+ .
T Consensus 19 ~~l~~~nl~~~~~~~~il~~vsl~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 97 (267)
T PRK14237 19 IALSTKDLHVYYGKKEAIKGIDMQFEKN-KITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97 (267)
T ss_pred eEEEEeeEEEEECCeeeEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChH
Confidence 46789999999987665 999999999 99999999999999999999 77631 0
Q ss_pred --hhhceeecCCCCC-CccHHHH----------------------HHHHcCCc----hhhhcccccccHHHH-HHHHHHH
Q 006974 378 --SKAGLYLPAKNHP-RLPWFDL----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDILE 427 (623)
Q Consensus 378 --a~~G~~vp~~~~~-~l~~~d~----------------------i~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~ 427 (623)
.+...|+|+.... ..++.++ ++..+++. +.+++.+.+||+|++ |++++++
T Consensus 98 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~lara 177 (267)
T PRK14237 98 EMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARA 177 (267)
T ss_pred HHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHH
Confidence 1123567775311 0122222 23344442 346788899999999 8999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
++.+|+++||||||+|||+.....+... +..+.+ +.++|++||+.+ +..+||++..+.+|++...
T Consensus 178 l~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 243 (267)
T PRK14237 178 IAVKPDILLMDEPASALDPISTMQLEET-MFELKK-NYTIIIVTHNMQQAARASDYTAFFYLGDLIEY 243 (267)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHhc-CCEEEEEecCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999994 455554 689999999987 5689999999999998754
No 205
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=1.4e-24 Score=214.36 Aligned_cols=155 Identities=19% Similarity=0.204 Sum_probs=122.5
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhhceeec
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP 385 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~G~~vp 385 (623)
++++|++++|++..+ ++||++.+| ++++|+||||||||||++++ |+..+. .+...|+|
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~ 80 (200)
T PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAG-GLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVG 80 (200)
T ss_pred EEEEEEEEEeCCeeEEeeeeEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEec
Confidence 678999999987665 999999999 99999999999999999999 665321 11123666
Q ss_pred CCCC--CCccH----------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCH
Q 006974 386 AKNH--PRLPW----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP 446 (623)
Q Consensus 386 ~~~~--~~l~~----------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~ 446 (623)
+... ...++ ++.++..+++.+..++.+.+||+|++ |++++++++.+|+++||||||+|+|+
T Consensus 81 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~ 160 (200)
T PRK13540 81 HRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDE 160 (200)
T ss_pred cccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCH
Confidence 5431 11222 23345566776667888899999999 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcccc
Q 006974 447 SEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKD 483 (623)
Q Consensus 447 ~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~ 483 (623)
.....+...+. .+++.+.++|++||+.+...-||..
T Consensus 161 ~~~~~l~~~l~-~~~~~~~tiii~sh~~~~~~~~d~~ 196 (200)
T PRK13540 161 LSLLTIITKIQ-EHRAKGGAVLLTSHQDLPLNKADYE 196 (200)
T ss_pred HHHHHHHHHHH-HHHHcCCEEEEEeCCchhccccchh
Confidence 99999999555 4566688999999998866666643
No 206
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.92 E-value=1.3e-24 Score=214.65 Aligned_cols=158 Identities=22% Similarity=0.256 Sum_probs=120.3
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhh--hhhh-------------------h-hc
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SLMS-------------------K-AG 381 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~--~~~a-------------------~-~G 381 (623)
++++|++++|++..+ ++||++.+| ++++|+||||||||||+|++ |+. .+.+ + ..
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKG-EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred CeEEEEEEEeCCEEeeeccceEECCC-cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 357899999987555 999999999 99999999999999999999 552 1100 0 12
Q ss_pred eeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 006974 382 LYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460 (623)
Q Consensus 382 ~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l 460 (623)
.|+|+.. ..++. +-..+.+....+.||+||+ |++++++++.+|+++||||||+|+|+.....+...+. .+
T Consensus 80 ~~v~q~~-~~~~~-------~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~-~~ 150 (200)
T cd03217 80 FLAFQYP-PEIPG-------VKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVIN-KL 150 (200)
T ss_pred EEeecCh-hhccC-------ccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH-HH
Confidence 2344432 11110 0011222334468999999 7999999999999999999999999999999998554 46
Q ss_pred hcCCcEEEEEcCchhHHh--hccccceeeCceEEEe
Q 006974 461 RDRVGLAVVTTHYADLSC--LKDKDTRFENAATEFS 494 (623)
Q Consensus 461 ~~~~~~vii~TH~~~l~~--~~~~~~~i~~g~~~~~ 494 (623)
.+.+.|+|++||+.+... +|++++.+.+|.+...
T Consensus 151 ~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~ 186 (200)
T cd03217 151 REEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKS 186 (200)
T ss_pred HHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEE
Confidence 666889999999998655 7999999999988654
No 207
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.6e-24 Score=217.83 Aligned_cols=166 Identities=17% Similarity=0.164 Sum_probs=129.9
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-----h--------------------
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M-------------------- 377 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-----~-------------------- 377 (623)
+++++||++.|++..+ ++||++.+| ++++|+||||+||||||++| |+..+ .
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 81 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKN-QITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE 81 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCC-CEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence 4789999999987655 999999999 99999999999999999999 76531 0
Q ss_pred -hhhceeecCCCC-CCccHHHHH----------------------HHHcCCc----hhhhcccccccHHHH-HHHHHHHh
Q 006974 378 -SKAGLYLPAKNH-PRLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (623)
Q Consensus 378 -a~~G~~vp~~~~-~~l~~~d~i----------------------~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~l 428 (623)
.+...|+|+... ...+..+++ +..+|+. ...++.+.+||+||+ |+++++++
T Consensus 82 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al 161 (250)
T PRK14262 82 YRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARAL 161 (250)
T ss_pred hhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHH
Confidence 122346666531 012222222 2333432 235778899999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+.+|+++||||||+|||+.....+...+. .+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~-~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~ 226 (250)
T PRK14262 162 AVEPEVILLDEPTSALDPIATQRIEKLLE-ELSE-NYTIVIVTHNIGQAIRIADYIAFMYRGELIEY 226 (250)
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHH-HHhc-CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999998554 4555 689999999988 6789999999999998754
No 208
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.9e-24 Score=217.85 Aligned_cols=167 Identities=20% Similarity=0.255 Sum_probs=129.4
Q ss_pred CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh--hh----------------------
Q 006974 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS--LM---------------------- 377 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~--~~---------------------- 377 (623)
-+++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+.. +.
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 4 KIITSSDVHLFYGKFEALKGIDLDFNQN-EITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred ceEEEEeEEEEECCeeEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 46889999999987655 999999999 99999999999999999999 7642 10
Q ss_pred --hhhceeecCCCCC-CccHHHHH----------------------HHHcCC----chhhhcccccccHHHH-HHHHHHH
Q 006974 378 --SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGD----HQSLEQNLSTFSGHIS-RIVDILE 427 (623)
Q Consensus 378 --a~~G~~vp~~~~~-~l~~~d~i----------------------~~~ig~----~~~~~~~~stfS~g~~-rl~~~~~ 427 (623)
.+...|+|+.... ..++.+++ +..++. .+..++.+.+||+||+ |++++++
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~lara 162 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARV 162 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHH
Confidence 0113466765311 11222222 222332 2345678899999999 8999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
++.+|+++||||||+|||+.....+... +..+.+ +.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus 163 l~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14255 163 LAVKPDVILLDEPTSALDPISSTQIENM-LLELRD-QYTIILVTHSMHQASRISDKTAFFLTGNLIEF 228 (252)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHH-HHHHHh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999994 444555 479999999988 5678999999999998765
No 209
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2.5e-24 Score=207.44 Aligned_cols=150 Identities=21% Similarity=0.305 Sum_probs=108.5
Q ss_pred EEEceeeeecCCc--cc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccH-------H
Q 006974 327 MTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW-------F 395 (623)
Q Consensus 327 l~~~~l~~~y~~~--~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~-------~ 395 (623)
++++|+++.|++. .+ ++||++.+| ++++|+||||+|||||+|++ +|...|..|...+.. .
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G-~~~~l~G~nGsGKstLl~~i--------~G~~~~~~G~i~~~g~~~~~~~~ 71 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPG-EKVAIVGPSGSGKSTLLKLL--------LRLYDPTSGEILIDGVDLRDLDL 71 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCC-CEEEEECCCCCCHHHHHHHH--------HcCCCCCCCEEEECCEEhhhcCH
Confidence 3578999999764 34 999999999 99999999999999999999 333333322110000 0
Q ss_pred HHHHHHcCC--------chhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcE
Q 006974 396 DLILADIGD--------HQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGL 466 (623)
Q Consensus 396 d~i~~~ig~--------~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~ 466 (623)
......++. ...+..++ ||+||+ |+.++++++.+|+++||||||+|+|+.....+.. ++..+.+ +.+
T Consensus 72 ~~~~~~i~~~~~~~~~~~~t~~e~l--LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~-~l~~~~~-~~t 147 (171)
T cd03228 72 ESLRKNIAYVPQDPFLFSGTIRENI--LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE-ALRALAK-GKT 147 (171)
T ss_pred HHHHhhEEEEcCCchhccchHHHHh--hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHH-HHHHhcC-CCE
Confidence 000001110 00111111 999999 7999999999999999999999999999999999 4555554 689
Q ss_pred EEEEcCchhHHhhccccceeeCc
Q 006974 467 AVVTTHYADLSCLKDKDTRFENA 489 (623)
Q Consensus 467 vii~TH~~~l~~~~~~~~~i~~g 489 (623)
+|++||+.+....|++...+.+|
T Consensus 148 ii~~sh~~~~~~~~d~~~~l~~g 170 (171)
T cd03228 148 VIVIAHRLSTIRDADRIIVLDDG 170 (171)
T ss_pred EEEEecCHHHHHhCCEEEEEcCC
Confidence 99999998855459988888776
No 210
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.92 E-value=3.9e-24 Score=210.31 Aligned_cols=158 Identities=25% Similarity=0.328 Sum_probs=122.5
Q ss_pred cEEEceeeeecCC------ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhh--hhhh----------------
Q 006974 326 EMTVGSLSKGISD------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SLMS---------------- 378 (623)
Q Consensus 326 ~l~~~~l~~~y~~------~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~--~~~a---------------- 378 (623)
.++++||++.|++ ..+ ++||++.+| ++++|+||||||||||+|++ |+. .+.+
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~G-e~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~ 81 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPG-ELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFR 81 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhh
Confidence 4789999999975 444 999999999 99999999999999999999 666 4311
Q ss_pred hhceeecCCCC--CCccHHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHH
Q 006974 379 KAGLYLPAKNH--PRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATS 455 (623)
Q Consensus 379 ~~G~~vp~~~~--~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~a 455 (623)
....|+|+... ..+++.+++... .....||+||+ |+.++++++.+|+++||||||+|||+.....+..
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~~i~~~--------~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~- 152 (194)
T cd03213 82 KIIGYVPQDDILHPTLTVRETLMFA--------AKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMS- 152 (194)
T ss_pred heEEEccCcccCCCCCcHHHHHHHH--------HHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHH-
Confidence 11235555431 123344443211 01128999999 7999999999999999999999999999999998
Q ss_pred HHHHHhcCCcEEEEEcCchh--HHhhccccceeeCceEEE
Q 006974 456 ILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFENAATEF 493 (623)
Q Consensus 456 ll~~l~~~~~~vii~TH~~~--l~~~~~~~~~i~~g~~~~ 493 (623)
++..+.+++.|+|++||+.+ +..+||++..+.+|++..
T Consensus 153 ~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~ 192 (194)
T cd03213 153 LLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIY 192 (194)
T ss_pred HHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEe
Confidence 45556666889999999974 567899999999998754
No 211
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.7e-24 Score=218.62 Aligned_cols=165 Identities=15% Similarity=0.168 Sum_probs=125.3
Q ss_pred EEEceeeeecCCc--cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhce
Q 006974 327 MTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 382 (623)
Q Consensus 327 l~~~~l~~~y~~~--~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~ 382 (623)
++++|++++|++. .+ +++|++.+| ++++|+||||||||||+|++ |+..+. .+...
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAG-ETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 3578999999764 34 999999999 99999999999999999999 665431 11234
Q ss_pred eecCCCC-CCccHHHHH------------------------HHHc--CCchhhhcccccccHHHH-HHHHHHHhcCCCcE
Q 006974 383 YLPAKNH-PRLPWFDLI------------------------LADI--GDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (623)
Q Consensus 383 ~vp~~~~-~~l~~~d~i------------------------~~~i--g~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~L 434 (623)
|+|+... ...++.+++ +..+ |.....+..+.+||+|++ |+.++++++.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 6666531 011222222 1111 223334567889999999 79999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 435 lLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
+||||||+|||+.....+.. ++..+.+ +.++|++||+.+....|++++.+.+|++...
T Consensus 160 llLDEP~~~LD~~~~~~l~~-~l~~~~~-~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~ 217 (234)
T cd03251 160 LILDEATSALDTESERLVQA-ALERLMK-NRTTFVIAHRLSTIENADRIVVLEDGKIVER 217 (234)
T ss_pred EEEeCccccCCHHHHHHHHH-HHHHhcC-CCEEEEEecCHHHHhhCCEEEEecCCeEeee
Confidence 99999999999999999998 5555554 7899999999885556999999999988643
No 212
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.92 E-value=2.7e-24 Score=219.09 Aligned_cols=165 Identities=22% Similarity=0.236 Sum_probs=124.6
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhh--hhh-------------------h-hhc
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SLM-------------------S-KAG 381 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~--~~~-------------------a-~~G 381 (623)
++++||++.|++..+ ++||++.+| ++++|+||||||||||||++ |+. .+. . ...
T Consensus 2 i~~~nl~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 2 LSIKDLHVSVEDKAILRGLNLEVRPG-EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred eEEEEEEEEeCCeeeeecceeEEcCC-CEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 678999999987655 999999999 99999999999999999999 774 221 0 112
Q ss_pred eeecCCCCCCccH-------------------------------HHHHHHHcCCc-hhhhcccc-cccHHHH-HHHHHHH
Q 006974 382 LYLPAKNHPRLPW-------------------------------FDLILADIGDH-QSLEQNLS-TFSGHIS-RIVDILE 427 (623)
Q Consensus 382 ~~vp~~~~~~l~~-------------------------------~d~i~~~ig~~-~~~~~~~s-tfS~g~~-rl~~~~~ 427 (623)
.|+|+... .++. ++.++..+++. +..++.++ .||+||+ |++++++
T Consensus 81 ~~~~q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lara 159 (248)
T PRK09580 81 FMAFQYPV-EIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQM 159 (248)
T ss_pred EEEecCch-hccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHH
Confidence 35555431 1110 11223333442 23344454 7999999 8999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHh-h-ccccceeeCceEEEe
Q 006974 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC-L-KDKDTRFENAATEFS 494 (623)
Q Consensus 428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~-~-~~~~~~i~~g~~~~~ 494 (623)
++.+|+++||||||+|||+.....+.. ++..+++.++|+|++||+.++.. + ++++..+.+|++...
T Consensus 160 l~~~p~illLDEPt~~LD~~~~~~l~~-~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~ 227 (248)
T PRK09580 160 AVLEPELCILDESDSGLDIDALKIVAD-GVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS 227 (248)
T ss_pred HHcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEe
Confidence 999999999999999999999999998 55567777889999999988554 4 788888999987654
No 213
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.92 E-value=2.9e-24 Score=221.78 Aligned_cols=168 Identities=16% Similarity=0.153 Sum_probs=132.5
Q ss_pred cEEEceeeeecCC---------ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------
Q 006974 326 EMTVGSLSKGISD---------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------- 377 (623)
Q Consensus 326 ~l~~~~l~~~y~~---------~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------- 377 (623)
+++++||++.|++ +.+ ++||++.+| ++++|+||||||||||||+| |+..+.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSG-ETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence 4788999999973 444 999999999 99999999999999999999 665321
Q ss_pred ------hhhceeecCCCCC----CccH----------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHH
Q 006974 378 ------SKAGLYLPAKNHP----RLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIV 423 (623)
Q Consensus 378 ------a~~G~~vp~~~~~----~l~~----------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~ 423 (623)
.+...|+|+.... .... ++.++..+|+. +..++.+..||+||+ |++
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~ 161 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVC 161 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHH
Confidence 1123467765311 1111 22345666775 567889999999999 899
Q ss_pred HHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 424 ~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
++++++.+|+++||||||+|||+.....+...+.+...+.+.|+|++||+.+ +..+|+++..+.+|++...
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~ 233 (268)
T PRK10419 162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVET 233 (268)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeee
Confidence 9999999999999999999999999999999555433344789999999988 5579999999999988654
No 214
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=4e-24 Score=209.89 Aligned_cols=158 Identities=20% Similarity=0.228 Sum_probs=121.7
Q ss_pred cEEEceeeeecCC----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh--h---------------hhhc
Q 006974 326 EMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--M---------------SKAG 381 (623)
Q Consensus 326 ~l~~~~l~~~y~~----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~--~---------------a~~G 381 (623)
.++++|+++.|++ ..+ ++||++.+| ++++|+||||||||||||++ |+..+ . .+..
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i 81 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPG-TLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRST 81 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhce
Confidence 4789999999974 344 999999999 99999999999999999999 55321 0 1112
Q ss_pred eeecCCCC--CCccHHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006974 382 LYLPAKNH--PRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQ 458 (623)
Q Consensus 382 ~~vp~~~~--~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~ 458 (623)
.|+|+... ..+++.+++.... . ...||+||+ |+.++++++.+|+++|+|||++|+|+.....+.. ++.
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~----~----~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~-~l~ 152 (192)
T cd03232 82 GYVEQQDVHSPNLTVREALRFSA----L----LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVR-FLK 152 (192)
T ss_pred EEecccCccccCCcHHHHHHHHH----H----HhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHH-HHH
Confidence 35555431 1234444442110 0 118999999 7999999999999999999999999999999999 455
Q ss_pred HHhcCCcEEEEEcCchh--HHhhccccceeeC-ceEEE
Q 006974 459 YLRDRVGLAVVTTHYAD--LSCLKDKDTRFEN-AATEF 493 (623)
Q Consensus 459 ~l~~~~~~vii~TH~~~--l~~~~~~~~~i~~-g~~~~ 493 (623)
.+.+.+.|+|++||+.+ +..+||+++.+.+ |++.+
T Consensus 153 ~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~ 190 (192)
T cd03232 153 KLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVY 190 (192)
T ss_pred HHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEe
Confidence 56666889999999986 3688999999988 88765
No 215
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2.8e-24 Score=217.60 Aligned_cols=166 Identities=24% Similarity=0.257 Sum_probs=132.7
Q ss_pred EEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-----------------hhceeecCC
Q 006974 327 MTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-----------------KAGLYLPAK 387 (623)
Q Consensus 327 l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-----------------~~G~~vp~~ 387 (623)
+.++|+++.|++..+ ++||++.+| ++++|+||||+|||||++++ |+..+.+ +...|+|+.
T Consensus 1 l~~~~l~~~~~~~~l~~is~~i~~G-e~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~ 79 (235)
T cd03299 1 LKVENLSKDWKEFKLKNVSLEVERG-DYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQN 79 (235)
T ss_pred CeeEeEEEEeCCceeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeec
Confidence 357899999976544 999999999 99999999999999999999 6654321 122466665
Q ss_pred CCC--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCC
Q 006974 388 NHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 443 (623)
Q Consensus 388 ~~~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~g 443 (623)
... .+++ +..++..+|+...+++.+.+||+||+ |++++++++.+|+++||||||+|
T Consensus 80 ~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~g 159 (235)
T cd03299 80 YALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSA 159 (235)
T ss_pred CccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCccc
Confidence 311 1111 12345667888888999999999999 89999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 444 TDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 444 lD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+|+.....+...+.+ +.. .+.|+|++||+.+ +..+|+++..+.+|++...
T Consensus 160 LD~~~~~~l~~~l~~-~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~ 211 (235)
T cd03299 160 LDVRTKEKLREELKK-IRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQV 211 (235)
T ss_pred CCHHHHHHHHHHHHH-HHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999995554 544 4889999999987 5679999999999988654
No 216
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.92 E-value=1.8e-24 Score=217.36 Aligned_cols=164 Identities=12% Similarity=0.151 Sum_probs=126.9
Q ss_pred CCcEEEceeeeecCC---ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------h
Q 006974 324 NSEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------S 378 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~---~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a 378 (623)
.+.++++|+++.|++ ..+ +++|++.+| ++++|+||||||||||++++ |+..+. .
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPG-EVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 357899999999974 234 999999999 99999999999999999999 665421 1
Q ss_pred hhceeecCCCCC-CccHH------------------------HHHHHHc--CCchhhhcccccccHHHH-HHHHHHHhcC
Q 006974 379 KAGLYLPAKNHP-RLPWF------------------------DLILADI--GDHQSLEQNLSTFSGHIS-RIVDILELVS 430 (623)
Q Consensus 379 ~~G~~vp~~~~~-~l~~~------------------------d~i~~~i--g~~~~~~~~~stfS~g~~-rl~~~~~l~~ 430 (623)
+...|+|+.... ..++. ..++..+ |....++..+..||+||+ |+.++++++.
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 123466665310 00111 1223334 556667888999999999 8999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCce
Q 006974 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAA 490 (623)
Q Consensus 431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~ 490 (623)
+|+++||||||+|||+.....+...+. .+.+ +.|+|++||+.+....|++++.+.+|+
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~ 225 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALY-DWPE-RRTVLVIAHRLSTVERADQILVLDGGR 225 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHH-HHcC-CCEEEEEECCHHHHHhCCEEEEecCCc
Confidence 999999999999999999999999555 4555 589999999988656699988887764
No 217
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=4.6e-24 Score=208.84 Aligned_cols=167 Identities=25% Similarity=0.339 Sum_probs=137.9
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhc-e
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG-L 382 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G-~ 382 (623)
+++++||+..||...+ ++||++.+| ++++|+||||+|||||||+| |++.+. ++.| .
T Consensus 3 mL~v~~l~~~YG~~~~L~gvsl~v~~G-eiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 3 MLEVENLSAGYGKIQALRGVSLEVERG-EIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred ceeEEeEeecccceeEEeeeeeEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 5789999999998776 999999999 99999999999999999999 777542 2344 4
Q ss_pred eecCCC--CCCccHH--------------------HHHHHHcC-CchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEe
Q 006974 383 YLPAKN--HPRLPWF--------------------DLILADIG-DHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (623)
Q Consensus 383 ~vp~~~--~~~l~~~--------------------d~i~~~ig-~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLD 438 (623)
|||+.. ++.+++. +.+|+.|- +.+..++...+||||++ .++.+++++.+|+++|||
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLD 161 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLD 161 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEec
Confidence 788764 2333333 33444443 45667889999999999 588889999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchhHH-hhccccceeeCceEEEe
Q 006974 439 EIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (623)
Q Consensus 439 Ep~~glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~l~-~~~~~~~~i~~g~~~~~ 494 (623)
||+.||-|.-...|.. ++..+++. +.||++|.++...+ .++|+.+++.+|.+.+.
T Consensus 162 EPs~GLaP~iv~~I~~-~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~ 218 (237)
T COG0410 162 EPSEGLAPKIVEEIFE-AIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLS 218 (237)
T ss_pred CCccCcCHHHHHHHHH-HHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEe
Confidence 9999999999999999 56667755 66999999998855 69999999999999887
No 218
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.91 E-value=2.7e-24 Score=230.02 Aligned_cols=159 Identities=16% Similarity=0.122 Sum_probs=128.1
Q ss_pred ecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------------hhhceeecCCC
Q 006974 335 GISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGLYLPAKN 388 (623)
Q Consensus 335 ~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------------a~~G~~vp~~~ 388 (623)
.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+. .+...|+|+..
T Consensus 2 ~~~~~~~l~~vs~~i~~G-ei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 2 KTGGKKGVNDADLAIAKG-EIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred ccCCceeEEeeEEEEcCC-CEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 3444444 999999999 99999999999999999999 776421 12345788764
Q ss_pred CC--CccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCC
Q 006974 389 HP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (623)
Q Consensus 389 ~~--~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~gl 444 (623)
.. .+++. ..++..+|+....++.+++|||||+ |+.++++++.+|+++||||||++|
T Consensus 81 ~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saL 160 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSAL 160 (363)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 21 11221 2346677888889999999999999 899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 445 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 445 D~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
||..+..+...+.+...+.+.|+|++||+++ ...+|+++..+.+|++...
T Consensus 161 D~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~ 211 (363)
T TIGR01186 161 DPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQV 211 (363)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEee
Confidence 9999999999655433445889999999988 5689999999999988644
No 219
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.91 E-value=3.3e-24 Score=214.67 Aligned_cols=165 Identities=16% Similarity=0.143 Sum_probs=127.8
Q ss_pred cEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhc
Q 006974 326 EMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 381 (623)
Q Consensus 326 ~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G 381 (623)
.++++|++++|++ +.+ ++||++.+| ++++|+|||||||||||+++ |+..+. .+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPG-EKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCC-CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 4789999999964 234 999999999 99999999999999999999 664321 1223
Q ss_pred eeecCCCCCCc--cHH--------------HHHHHHcCCchhh-----------hcccccccHHHH-HHHHHHHhcCCCc
Q 006974 382 LYLPAKNHPRL--PWF--------------DLILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRES 433 (623)
Q Consensus 382 ~~vp~~~~~~l--~~~--------------d~i~~~ig~~~~~-----------~~~~stfS~g~~-rl~~~~~l~~~~~ 433 (623)
.|+|+... .+ ++. ...+..+++.+.+ +..++.||+||+ |+.++++++.+|+
T Consensus 81 ~~~~q~~~-l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 159 (221)
T cd03244 81 SIIPQDPV-LFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSK 159 (221)
T ss_pred EEECCCCc-cccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 46676542 11 112 2233445555544 357899999999 7999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 434 LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
++||||||+|||+.....+...+ ..+.+ +.|+|++||+.+....|++++.+.+|++...
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l-~~~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~ 218 (221)
T cd03244 160 ILVLDEATASVDPETDALIQKTI-REAFK-DCTVLTIAHRLDTIIDSDRILVLDKGRVVEF 218 (221)
T ss_pred EEEEeCccccCCHHHHHHHHHHH-HHhcC-CCEEEEEeCCHHHHhhCCEEEEEECCeEEec
Confidence 99999999999999999999954 44554 5899999999886566999999999987643
No 220
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6.5e-24 Score=216.87 Aligned_cols=166 Identities=19% Similarity=0.246 Sum_probs=129.6
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-----h--------------------
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M-------------------- 377 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-----~-------------------- 377 (623)
.++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+ .
T Consensus 4 ~l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (251)
T PRK14270 4 KMESKNLNLWYGEKQALNDINLPIYEN-KITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVE 82 (251)
T ss_pred EEEEEEeEEEECCeeeeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHH
Confidence 4788999999987555 999999999 99999999999999999999 76532 0
Q ss_pred -hhhceeecCCCCC-CccHHH----------------------HHHHHcCC----chhhhcccccccHHHH-HHHHHHHh
Q 006974 378 -SKAGLYLPAKNHP-RLPWFD----------------------LILADIGD----HQSLEQNLSTFSGHIS-RIVDILEL 428 (623)
Q Consensus 378 -a~~G~~vp~~~~~-~l~~~d----------------------~i~~~ig~----~~~~~~~~stfS~g~~-rl~~~~~l 428 (623)
.+...|+|+.... ..+..+ .++..+|+ .+..++.+..||+||+ |+++++++
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 162 (251)
T PRK14270 83 LRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTI 162 (251)
T ss_pred HHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 1113466765410 112222 22334443 2346778899999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+.+|+++||||||+|||+.....+...+. .+.+ +.++|++||+.+ +..+|++++.+.+|++...
T Consensus 163 ~~~p~llllDEP~~~LD~~~~~~l~~~L~-~~~~-~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~ 227 (251)
T PRK14270 163 AVKPDVILMDEPTSALDPISTLKIEDLMV-ELKK-EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEF 227 (251)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHH-HHHh-CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEe
Confidence 99999999999999999999999998544 4555 489999999987 5788999999999998754
No 221
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5.4e-24 Score=218.39 Aligned_cols=166 Identities=19% Similarity=0.245 Sum_probs=128.4
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh------h-------------------
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------M------------------- 377 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~------~------------------- 377 (623)
.++++||+++|++..+ ++||++.+| ++++|+||||||||||||++ |+..+ -
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPR-SVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence 4789999999987555 999999999 99999999999999999999 77642 0
Q ss_pred -hhhceeecCCCC--CCccHHH----------------------HHHHHcCC----chhhhcccccccHHHH-HHHHHHH
Q 006974 378 -SKAGLYLPAKNH--PRLPWFD----------------------LILADIGD----HQSLEQNLSTFSGHIS-RIVDILE 427 (623)
Q Consensus 378 -a~~G~~vp~~~~--~~l~~~d----------------------~i~~~ig~----~~~~~~~~stfS~g~~-rl~~~~~ 427 (623)
.+...|+|+... ..+++.+ .++..+|+ .+..++.+.+||+||+ |++++++
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 162 (258)
T PRK14241 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARA 162 (258)
T ss_pred HhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 011235665431 1122222 22334454 2456788899999999 8999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceee------CceEEEe
Q 006974 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE------NAATEFS 494 (623)
Q Consensus 428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~------~g~~~~~ 494 (623)
++.+|+++||||||+|||+.....+... +..+.+ +.|+|++||+.+ +..+|++++.+. +|++...
T Consensus 163 l~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~-~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 163 IAVEPDVLLMDEPCSALDPISTLAIEDL-INELKQ-DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHH-HHHHhc-CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 9999999999999999999999999984 445554 589999999987 567999998886 6777644
No 222
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5.7e-24 Score=225.85 Aligned_cols=167 Identities=12% Similarity=0.133 Sum_probs=132.3
Q ss_pred cEEEceeeeecC----Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh----h-----------------
Q 006974 326 EMTVGSLSKGIS----DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----M----------------- 377 (623)
Q Consensus 326 ~l~~~~l~~~y~----~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~----~----------------- 377 (623)
.++++||++.|+ ...+ ++||++.+| ++++|+|+||||||||+|+| |+... .
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~G-e~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEG-EIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCC-CEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 478999999993 3333 999999999 99999999999999999999 77631 0
Q ss_pred ------hhhceeecCCCCCC----ccH---------------------------HHHHHHHcCCch---hhhcccccccH
Q 006974 378 ------SKAGLYLPAKNHPR----LPW---------------------------FDLILADIGDHQ---SLEQNLSTFSG 417 (623)
Q Consensus 378 ------a~~G~~vp~~~~~~----l~~---------------------------~d~i~~~ig~~~---~~~~~~stfS~ 417 (623)
.+...|+|++.... +.+ +..++..+|+.+ ..++.++.|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 01235788864211 111 123455667653 35788999999
Q ss_pred HHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhH-HhhccccceeeCceEEEe
Q 006974 418 HIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (623)
Q Consensus 418 g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l-~~~~~~~~~i~~g~~~~~ 494 (623)
||+ |++++++++.+|++||+||||+|||+..+..+.. ++..+.+ .|.|+|++|||+++ ..+||++.++.+|+++..
T Consensus 162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~-lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~ 240 (330)
T PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFR-LLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVET 240 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 999 8999999999999999999999999999999999 4555665 48899999999884 579999999999998754
No 223
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6.1e-24 Score=217.06 Aligned_cols=166 Identities=17% Similarity=0.195 Sum_probs=129.3
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------------
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------- 377 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------------- 377 (623)
.++++||+++|++..+ ++||++.+| ++++|+|||||||||||++| |++.+-
T Consensus 4 ~l~~~~l~~~~~~~~il~~~s~~i~~G-~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 82 (251)
T PRK14249 4 KIKIRGVNFFYHKHQVLKNINMDFPER-QITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN 82 (251)
T ss_pred eEEEEEEEEEECCeeEecceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence 5789999999987655 999999999 99999999999999999999 775432
Q ss_pred -hhhceeecCCCCC-CccHHHH----------------------HHHHcCCc----hhhhcccccccHHHH-HHHHHHHh
Q 006974 378 -SKAGLYLPAKNHP-RLPWFDL----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (623)
Q Consensus 378 -a~~G~~vp~~~~~-~l~~~d~----------------------i~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~l 428 (623)
.+...|+|+.... ..++.++ ++..+++. +..++.+.+||+||+ |+++++++
T Consensus 83 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 162 (251)
T PRK14249 83 LRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVL 162 (251)
T ss_pred hhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 0113466665311 0112221 12233432 345788899999999 79999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+.+|+++||||||+|||+.....+... +..+. ++.|+|++||+.+ +..+|+++..+.+|.+...
T Consensus 163 ~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~-~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14249 163 AIEPEVILMDEPCSALDPVSTMRIEEL-MQELK-QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEY 227 (251)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHh-cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEe
Confidence 999999999999999999999999994 44555 4789999999987 5678999999999988654
No 224
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.91 E-value=2.6e-24 Score=217.90 Aligned_cols=165 Identities=15% Similarity=0.117 Sum_probs=124.1
Q ss_pred EEEceeeeecCC---ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhc
Q 006974 327 MTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 381 (623)
Q Consensus 327 l~~~~l~~~y~~---~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G 381 (623)
++++|+++.|++ ..+ ++||++.+| ++++|+|||||||||||++| |+..+. .+..
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPG-KTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQI 79 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCC-CEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhE
Confidence 357899999964 233 899999999 99999999999999999999 665421 1123
Q ss_pred eeecCCCCC-CccHHHHH---------------HHHcCC-----------chhhhcccccccHHHH-HHHHHHHhcCCCc
Q 006974 382 LYLPAKNHP-RLPWFDLI---------------LADIGD-----------HQSLEQNLSTFSGHIS-RIVDILELVSRES 433 (623)
Q Consensus 382 ~~vp~~~~~-~l~~~d~i---------------~~~ig~-----------~~~~~~~~stfS~g~~-rl~~~~~l~~~~~ 433 (623)
.|+|+.... ..++.+++ ....+. ....+..+..||+||+ |+.++++++.+|+
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 159 (238)
T cd03249 80 GLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK 159 (238)
T ss_pred EEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCC
Confidence 466665310 01222211 111122 2233456789999999 7999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 434 LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
++||||||+|||+.....+... +..+. ++.++|++||+.+...+||+++.+.+|.+..+
T Consensus 160 llllDEP~~gLD~~~~~~l~~~-l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~ 218 (238)
T cd03249 160 ILLLDEATSALDAESEKLVQEA-LDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQ 218 (238)
T ss_pred EEEEeCccccCCHHHHHHHHHH-HHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEe
Confidence 9999999999999999999994 44455 68899999999886568999999999988654
No 225
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=3.9e-24 Score=221.80 Aligned_cols=167 Identities=15% Similarity=0.111 Sum_probs=133.1
Q ss_pred cEEEceeeeecCCc---cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh
Q 006974 326 EMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 380 (623)
Q Consensus 326 ~l~~~~l~~~y~~~---~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~ 380 (623)
.++++||++.|++. .+ ++||++.+| ++++|+||||||||||+++| |+..+. .+.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 82 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKG-EWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcc
Confidence 47899999999742 23 999999999 99999999999999999999 665421 112
Q ss_pred ceeecCCCC---CCccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974 381 GLYLPAKNH---PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (623)
Q Consensus 381 G~~vp~~~~---~~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll 435 (623)
..|+|+... ....+. +.++..+|+.+..++.+..||+||+ |+.++++++.+|+++
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~ll 162 (277)
T PRK13642 83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEII 162 (277)
T ss_pred eEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 346777531 111222 2344556777777889999999999 799999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 436 LIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 436 LLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
||||||+|||+.....+... +..+.+ .|.|+|++||+.+....|++++.+.+|++...
T Consensus 163 llDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~ 221 (277)
T PRK13642 163 ILDESTSMLDPTGRQEIMRV-IHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKE 221 (277)
T ss_pred EEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999994 445655 48899999999986667999999999988654
No 226
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=8.9e-24 Score=219.01 Aligned_cols=167 Identities=20% Similarity=0.276 Sum_probs=131.3
Q ss_pred CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------------
Q 006974 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------ 377 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------------ 377 (623)
-.+.++||+++|++..+ ++||++.+| ++++|+||||+|||||||+| |+..+.
T Consensus 20 ~~l~i~nl~~~~~~~~il~~vs~~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 20 PAMAAVNLTLGFAGKTVLDQVSMGFPAR-AVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred cEEEEeeEEEEECCEEEeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 36789999999987665 999999999 99999999999999999999 776420
Q ss_pred -hhhceeecCCCCC-CccHHH----------------------HHHHHcCCc----hhhhcccccccHHHH-HHHHHHHh
Q 006974 378 -SKAGLYLPAKNHP-RLPWFD----------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (623)
Q Consensus 378 -a~~G~~vp~~~~~-~l~~~d----------------------~i~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~l 428 (623)
.....|+|+.... ..+.++ .++..+|+. +.+++.+.+||+||+ |+++++++
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral 178 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTL 178 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 1122467765311 012222 223444543 235677889999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+.+|+++||||||+|+|+.....+.. ++..+.+ +.|+|++||+.+ +..+|+++..+.+|++...
T Consensus 179 ~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~-~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~ 243 (276)
T PRK14271 179 AVNPEVLLLDEPTSALDPTTTEKIEE-FIRSLAD-RLTVIIVTHNLAQAARISDRAALFFDGRLVEE 243 (276)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999998 4555555 489999999988 5789999999999988654
No 227
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.91 E-value=2.1e-24 Score=212.75 Aligned_cols=147 Identities=23% Similarity=0.248 Sum_probs=117.0
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhhceeec
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP 385 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~G~~vp 385 (623)
++++|+++.|++..+ ++||++.+| ++++|+||||||||||+|++ |+..+. .+...|+|
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAG-EALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLG 79 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEec
Confidence 367899999987665 999999999 99999999999999999999 765321 01224666
Q ss_pred CCCC--CCccH-----------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCC
Q 006974 386 AKNH--PRLPW-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 445 (623)
Q Consensus 386 ~~~~--~~l~~-----------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD 445 (623)
+... ..+++ +..++..+|+.+..++.+.+||+||+ |++++++++.+|+++||||||+|+|
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 159 (198)
T TIGR01189 80 HLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALD 159 (198)
T ss_pred cCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 6431 11122 22345667787778899999999999 7999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974 446 PSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (623)
Q Consensus 446 ~~~~~~l~~all~~l~~~~~~vii~TH~~~ 475 (623)
+.....+...+.+ +.+.+.|+|++||+..
T Consensus 160 ~~~~~~l~~~l~~-~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 160 KAGVALLAGLLRA-HLARGGIVLLTTHQDL 188 (198)
T ss_pred HHHHHHHHHHHHH-HHhCCCEEEEEEcccc
Confidence 9999999995554 5666889999999863
No 228
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=9e-24 Score=215.53 Aligned_cols=166 Identities=17% Similarity=0.247 Sum_probs=129.3
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------------
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------- 377 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------------- 377 (623)
.++++|+++.|+++.+ ++||++.+| ++++|+||||||||||+|+| |+..+-
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPAR-QVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCC-CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 4788999999987655 999999999 99999999999999999999 765421
Q ss_pred hhhceeecCCCCC-CccHHHHH----------------------HHHcCCc----hhhhcccccccHHHH-HHHHHHHhc
Q 006974 378 SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILELV 429 (623)
Q Consensus 378 a~~G~~vp~~~~~-~l~~~d~i----------------------~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~l~ 429 (623)
.+...|+|+.... ..+..+++ +..+|.. +..+..+.+||+|++ |+.++++++
T Consensus 82 ~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 161 (249)
T PRK14253 82 RIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIA 161 (249)
T ss_pred HhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHH
Confidence 0112466665311 11222222 2223332 345677889999999 899999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
.+|+++||||||+|+|+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 162 ~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~ 225 (249)
T PRK14253 162 MEPDVILMDEPTSALDPIATHKIEE-LMEELKK-NYTIVIVTHSMQQARRISDRTAFFLMGELVEH 225 (249)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999 5555665 489999999988 5778999999999998754
No 229
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6.9e-24 Score=216.70 Aligned_cols=166 Identities=18% Similarity=0.260 Sum_probs=129.1
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------------
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------- 377 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------------- 377 (623)
.++++||++.|++..+ ++||++.+| ++++|+||||+|||||+|+| |+..+-
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRG-TVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 4788999999987665 999999999 99999999999999999999 765321
Q ss_pred -hhhceeecCCCC--CCccHHHHHH----------------------HHcCC----chhhhcccccccHHHH-HHHHHHH
Q 006974 378 -SKAGLYLPAKNH--PRLPWFDLIL----------------------ADIGD----HQSLEQNLSTFSGHIS-RIVDILE 427 (623)
Q Consensus 378 -a~~G~~vp~~~~--~~l~~~d~i~----------------------~~ig~----~~~~~~~~stfS~g~~-rl~~~~~ 427 (623)
.+...|+|+... ..+++.+++. ..++. .+..++.+++||+||+ |++++++
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 162 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARA 162 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHH
Confidence 011236666542 1123333321 12221 1234677899999999 8999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
++.+|+++||||||+|+|+.....+.. +++.+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 163 l~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14272 163 LAVEPEILLMDEPTSALDPASTARIED-LMTDLKK-VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEH 228 (252)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999 4555654 689999999988 5678999999999998754
No 230
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=7.4e-24 Score=216.40 Aligned_cols=166 Identities=19% Similarity=0.274 Sum_probs=129.1
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-----h--------------------
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M-------------------- 377 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-----~-------------------- 377 (623)
.++++|++++|++..+ ++||++.+| ++++|+||||||||||+|++ |+... .
T Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 4 IISAKDVHLSYGNYEALHGISLDFEEK-ELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 4789999999987655 899999999 99999999999999999999 77641 0
Q ss_pred -hhhceeecCCCCC-CccHHH----------------------HHHHHcCCc----hhhhcccccccHHHH-HHHHHHHh
Q 006974 378 -SKAGLYLPAKNHP-RLPWFD----------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (623)
Q Consensus 378 -a~~G~~vp~~~~~-~l~~~d----------------------~i~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~l 428 (623)
.+...|+|+.... ..++.+ .++..+++. ...++.+.+||+||+ |+++++++
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral 162 (251)
T PRK14251 83 LRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARAL 162 (251)
T ss_pred hhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHH
Confidence 0112356665310 112222 223344542 345778899999999 79999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+.+|+++|||||++|||+.....+...+. .+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 163 ~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14251 163 AVRPKVVLLDEPTSALDPISSSEIEETLM-ELKH-QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEA 227 (251)
T ss_pred hcCCCEEEecCCCccCCHHHHHHHHHHHH-HHHc-CCeEEEEECCHHHHHhhcCEEEEEECCEEEEe
Confidence 99999999999999999999999998544 4554 589999999987 5678999999999998654
No 231
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.91 E-value=3.1e-24 Score=235.52 Aligned_cols=167 Identities=15% Similarity=0.100 Sum_probs=131.1
Q ss_pred cEEEceeeeecCCc---cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhh----hc--eeecCCC--CCC
Q 006974 326 EMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK----AG--LYLPAKN--HPR 391 (623)
Q Consensus 326 ~l~~~~l~~~y~~~---~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~----~G--~~vp~~~--~~~ 391 (623)
+++++||++.|++. .+ +++|++.+| ++++|+|||||||||||+++ |++.+... .| .+++... ...
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~G-EivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~ 99 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEG-EIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQ 99 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCC-CEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCC
Confidence 57899999999763 33 999999999 99999999999999999999 66543210 00 0011000 011
Q ss_pred ccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHH
Q 006974 392 LPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 449 (623)
Q Consensus 392 l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~ 449 (623)
+++ ++.++..+|+.+.+++.+++|||||+ |+++|++++.+|+++||||||+|||+...
T Consensus 100 lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr 179 (549)
T PRK13545 100 LTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFT 179 (549)
T ss_pred CcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHH
Confidence 111 12345667888888999999999999 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 450 VALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 450 ~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
..+... +..+.+.|+|+|++||+++ +..+|++++.+.+|++...
T Consensus 180 ~~Llel-L~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~ 224 (549)
T PRK13545 180 KKCLDK-MNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEY 224 (549)
T ss_pred HHHHHH-HHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 999985 4556667889999999987 5678999999999988655
No 232
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.91 E-value=3.7e-24 Score=211.87 Aligned_cols=162 Identities=19% Similarity=0.164 Sum_probs=121.8
Q ss_pred EEEceeeeecCCc-----cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhh------hceeecCCCC-CC
Q 006974 327 MTVGSLSKGISDF-----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK------AGLYLPAKNH-PR 391 (623)
Q Consensus 327 l~~~~l~~~y~~~-----~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~------~G~~vp~~~~-~~ 391 (623)
++++||++.|++. .+ ++||++++| ++++|+|||||||||||+++ |+..+..- ...|+|+... ..
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G-~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~ 79 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKG-ELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQN 79 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCC-CEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhcc
Confidence 3678999999763 34 999999999 99999999999999999999 66544211 1146677631 01
Q ss_pred ccHHHH--------------HHHHcCCchh-----------hhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCC
Q 006974 392 LPWFDL--------------ILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 445 (623)
Q Consensus 392 l~~~d~--------------i~~~ig~~~~-----------~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD 445 (623)
.+..++ ....+++.+. .......||+||+ |++++++++.+|+++||||||+|||
T Consensus 80 ~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD 159 (204)
T cd03250 80 GTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVD 159 (204)
T ss_pred CcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 122222 2222333222 3445689999999 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCc
Q 006974 446 PSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENA 489 (623)
Q Consensus 446 ~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g 489 (623)
+.....+...++..+.+.+.|+|++||+.+....|+++..+.+|
T Consensus 160 ~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G 203 (204)
T cd03250 160 AHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNG 203 (204)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCC
Confidence 99999998866665555578999999998855559988888776
No 233
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.91 E-value=2.3e-24 Score=214.28 Aligned_cols=152 Identities=21% Similarity=0.258 Sum_probs=123.5
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh---hhceeecCCCC------------------CCccH-----
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS---KAGLYLPAKNH------------------PRLPW----- 394 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a---~~G~~vp~~~~------------------~~l~~----- 394 (623)
++||++++| ++++++||||+||||+||++ |++.+.+ ..+.+.|.... ..++.
T Consensus 42 disf~IP~G-~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~ 120 (325)
T COG4586 42 DISFEIPKG-EIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLE 120 (325)
T ss_pred eeeeecCCC-cEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHH
Confidence 999999999 99999999999999999999 5554432 12223333310 00010
Q ss_pred ----------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 006974 395 ----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSIL 457 (623)
Q Consensus 395 ----------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all 457 (623)
.+.+-+.++++..+..++..||-|++ |+.+++++..+|.+|+|||||-|||...+.++...+.
T Consensus 121 v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flk 200 (325)
T COG4586 121 VLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLK 200 (325)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHH
Confidence 11122345667788999999999999 8999999999999999999999999999999999777
Q ss_pred HHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 458 QYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 458 ~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
++-.+.++||+.|||+++ +..+|+++..+..|.+.|+
T Consensus 201 e~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~d 238 (325)
T COG4586 201 EYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFD 238 (325)
T ss_pred HHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeec
Confidence 777778999999999986 9999999999999999987
No 234
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=4.5e-24 Score=239.35 Aligned_cols=167 Identities=14% Similarity=0.141 Sum_probs=133.8
Q ss_pred cEEEceeeeecC---Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-h--------------------h
Q 006974 326 EMTVGSLSKGIS---DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-M--------------------S 378 (623)
Q Consensus 326 ~l~~~~l~~~y~---~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-~--------------------a 378 (623)
+++++||++.|+ +..+ ++||++.+| ++++|+||||||||||||+| |++.+ . .
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~G-e~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~ 337 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRG-EILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA 337 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCC-cEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 578899999993 3334 899999999 99999999999999999999 77642 1 0
Q ss_pred hhceeecCCCC-----CCccH--------------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHH
Q 006974 379 KAGLYLPAKNH-----PRLPW--------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDI 425 (623)
Q Consensus 379 ~~G~~vp~~~~-----~~l~~--------------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~ 425 (623)
+.-.|+|+... ..++. ++.++..+|+. +..++.+.+|||||+ |+.+|
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA 417 (506)
T PRK13549 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLA 417 (506)
T ss_pred CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHH
Confidence 11247777520 11111 22345667775 467889999999999 89999
Q ss_pred HHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 426 ~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
++++.+|+++||||||+|||+.....+.. ++..+.++|.|||++|||.+ +..+||+++.+.+|++..+
T Consensus 418 ~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~ 486 (506)
T PRK13549 418 KCLLLNPKILILDEPTRGIDVGAKYEIYK-LINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGD 486 (506)
T ss_pred HHHhhCCCEEEEcCCCCCcCHhHHHHHHH-HHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999 55667777899999999987 6689999999999998654
No 235
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=8.4e-24 Score=220.17 Aligned_cols=169 Identities=17% Similarity=0.214 Sum_probs=130.1
Q ss_pred CCCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh----------------h------
Q 006974 323 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------M------ 377 (623)
Q Consensus 323 g~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~----------------~------ 377 (623)
|...++++||++.|++..+ +++|++.+| ++++|+|||||||||||++| |+..+ .
T Consensus 36 ~~~~l~i~~l~~~~~~~~il~~is~~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 36 GETVIEARDLNVFYGDEQALDDVSMDIPEN-QVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred CCceEEEEEEEEEECCEeeEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 4557899999999987655 999999999 99999999999999999999 77531 0
Q ss_pred ----hhhceeecCCCCC-CccHHH--------------------HHHHHcCCc----hhhhcccccccHHHH-HHHHHHH
Q 006974 378 ----SKAGLYLPAKNHP-RLPWFD--------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDILE 427 (623)
Q Consensus 378 ----a~~G~~vp~~~~~-~l~~~d--------------------~i~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~ 427 (623)
.+...|+|+.... ...+.+ .++..+|+. +.+++.+++||+||+ |++++++
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAra 194 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARA 194 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHH
Confidence 0112466765310 012222 233445542 356788999999999 8999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH-Hhhccccc-eeeCceEEEe
Q 006974 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDT-RFENAATEFS 494 (623)
Q Consensus 428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l-~~~~~~~~-~i~~g~~~~~ 494 (623)
++.+|+++||||||+|||+.....+... +..+.+. .++|++||+.+. ..+|++++ .+.+|++..+
T Consensus 195 L~~~p~lLLLDEPts~LD~~~~~~l~~~-L~~~~~~-~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~ 261 (285)
T PRK14254 195 IAPDPEVILMDEPASALDPVATSKIEDL-IEELAEE-YTVVIVTHNMQQAARISDKTAVFLTGGELVEF 261 (285)
T ss_pred HHcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHhcC-CEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEe
Confidence 9999999999999999999999999985 4455553 799999999884 67899865 4688987654
No 236
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=8.5e-24 Score=216.03 Aligned_cols=164 Identities=18% Similarity=0.247 Sum_probs=128.3
Q ss_pred EEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-----h---------------------h
Q 006974 328 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M---------------------S 378 (623)
Q Consensus 328 ~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-----~---------------------a 378 (623)
+++||++.|++..+ ++||++.+| ++++|+||||||||||+|+| |+..+ . .
T Consensus 7 ~~~~l~~~~~~~~~l~~is~~i~~G-e~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 85 (251)
T PRK14244 7 SVKNLNLWYGSKQILFDINLDIYKR-EVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLR 85 (251)
T ss_pred EeeeEEEEECCeeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHh
Confidence 57899999987554 999999999 99999999999999999999 77531 0 1
Q ss_pred hhceeecCCCCCC-ccHHH-----------------------HHHHHcCCch----hhhcccccccHHHH-HHHHHHHhc
Q 006974 379 KAGLYLPAKNHPR-LPWFD-----------------------LILADIGDHQ----SLEQNLSTFSGHIS-RIVDILELV 429 (623)
Q Consensus 379 ~~G~~vp~~~~~~-l~~~d-----------------------~i~~~ig~~~----~~~~~~stfS~g~~-rl~~~~~l~ 429 (623)
+...|+|+..... .+..+ .++..+|+.+ .+++.+.+||+||+ |++++++++
T Consensus 86 ~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 165 (251)
T PRK14244 86 AKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIA 165 (251)
T ss_pred hhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHh
Confidence 1124777764210 01111 2345556543 35677899999999 799999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
.+|+++||||||+|||+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 166 ~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 229 (251)
T PRK14244 166 VKPTMLLMDEPCSALDPVATNVIEN-LIQELKK-NFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEY 229 (251)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhc-CCeEEEEeCCHHHHHhhcCEEEEEECCEEEEe
Confidence 9999999999999999999999988 4545554 789999999988 5678999999999998754
No 237
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2.3e-24 Score=217.80 Aligned_cols=167 Identities=17% Similarity=0.211 Sum_probs=135.6
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhce
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGL 382 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G~ 382 (623)
++.++|+++.|++... ++++.|..| ++++++|||||||||+||+| ||..+- .+...
T Consensus 2 ~i~i~~~~~~~~~~~a~~di~l~i~~G-e~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG 80 (345)
T COG1118 2 SIRINNVKKRFGAFGALDDISLDIKSG-ELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG 80 (345)
T ss_pred ceeehhhhhhcccccccccceeeecCC-cEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhccee
Confidence 3678899999987655 899999999 99999999999999999999 776542 11223
Q ss_pred eecCCC--CCCccHHHH-----------------------HHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974 383 YLPAKN--HPRLPWFDL-----------------------ILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (623)
Q Consensus 383 ~vp~~~--~~~l~~~d~-----------------------i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL 436 (623)
||+|+. +..++++++ ++..+.+++..++++..||||++ |+++|++++.+|++||
T Consensus 81 fvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLL 160 (345)
T COG1118 81 FVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLL 160 (345)
T ss_pred EEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEe
Confidence 666653 123333333 45566677778899999999999 8999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (623)
Q Consensus 437 LDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~ 493 (623)
||||+++||..-+..|..-+.+...+.|.|++++|||.+ ...+|+++.++.+|+++-
T Consensus 161 LDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieq 218 (345)
T COG1118 161 LDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQ 218 (345)
T ss_pred ecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeee
Confidence 999999999999999988555544455999999999987 568999999999998764
No 238
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.91 E-value=3.9e-24 Score=239.55 Aligned_cols=165 Identities=18% Similarity=0.208 Sum_probs=131.6
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh--h--------------------hhhc
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--M--------------------SKAG 381 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~--~--------------------a~~G 381 (623)
++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |++.+ . .+..
T Consensus 2 l~i~~l~~~~~~~~il~~isl~i~~G-e~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 2 LEMKGIVKTFGGVKALDGIDLEVRPG-ECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred EEEEeEEEEeCCeEeecceEEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 678999999987655 999999999 99999999999999999999 77643 0 0112
Q ss_pred eeecCCCC--CCccHH-------------------------HHHHHHcCCchhh-hcccccccHHHH-HHHHHHHhcCCC
Q 006974 382 LYLPAKNH--PRLPWF-------------------------DLILADIGDHQSL-EQNLSTFSGHIS-RIVDILELVSRE 432 (623)
Q Consensus 382 ~~vp~~~~--~~l~~~-------------------------d~i~~~ig~~~~~-~~~~stfS~g~~-rl~~~~~l~~~~ 432 (623)
.|+|+... ..+++. ..++..+|+.... ++.+++|||||+ |+++|++++.+|
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p 160 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQA 160 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCC
Confidence 47777531 111121 2344556665443 467899999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (623)
Q Consensus 433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~ 493 (623)
+++||||||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+||+++.+.+|++..
T Consensus 161 ~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~ 221 (500)
T TIGR02633 161 RLLILDEPSSSLTEKETEILLD-IIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVA 221 (500)
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEee
Confidence 9999999999999999999999 55566777889999999987 567999999999988754
No 239
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1e-23 Score=217.80 Aligned_cols=161 Identities=16% Similarity=0.253 Sum_probs=125.9
Q ss_pred CCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-----h------------------
Q 006974 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M------------------ 377 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-----~------------------ 377 (623)
..+++++||++.|++..+ ++||++.+| ++++|+|||||||||||++| |++.+ .
T Consensus 11 ~~~l~i~nl~~~~~~~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 11 NIIISLQNVTISYGTFEAVKNVFCDIPRG-KVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred CceEEEEeEEEEECCEEEEcceEEEEcCC-CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 347899999999987655 999999999 99999999999999999999 76531 0
Q ss_pred ---hhhceeecCCCCCCc--cHHH--------------------HHHHHcCC----chhhhcccccccHHHH-HHHHHHH
Q 006974 378 ---SKAGLYLPAKNHPRL--PWFD--------------------LILADIGD----HQSLEQNLSTFSGHIS-RIVDILE 427 (623)
Q Consensus 378 ---a~~G~~vp~~~~~~l--~~~d--------------------~i~~~ig~----~~~~~~~~stfS~g~~-rl~~~~~ 427 (623)
.+...|+|+... .+ ++.+ .++..++. .+..++.+.+||+||+ |++++++
T Consensus 90 ~~~~~~i~~v~q~~~-l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~lara 168 (269)
T PRK14259 90 VEVRRRIGMVFQQPN-PFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIART 168 (269)
T ss_pred HHHhhceEEEccCCc-cchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHH
Confidence 011346776531 11 1212 12333433 2345778899999999 8999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeC
Q 006974 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (623)
Q Consensus 428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~ 488 (623)
++.+|+++||||||+|||+.....+... +..+.+ +.|+|++||+.+ +..+||++..+.+
T Consensus 169 l~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 169 IAIEPEVILMDEPCSALDPISTLKIEET-MHELKK-NFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHH-HHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 9999999999999999999999999994 455554 689999999987 6689999998886
No 240
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=4.6e-24 Score=215.80 Aligned_cols=165 Identities=16% Similarity=0.163 Sum_probs=124.2
Q ss_pred EEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhcee
Q 006974 327 MTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY 383 (623)
Q Consensus 327 l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~~ 383 (623)
++++|+++.|+ +..+ +++|++.+| ++++|+|||||||||||++| |+..+. .+...|
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~G-e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAG-KKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 35789999995 3434 999999999 99999999999999999999 665421 112346
Q ss_pred ecCCCC-CCccHHHHH---------------HHHcCCc-----------hhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974 384 LPAKNH-PRLPWFDLI---------------LADIGDH-----------QSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (623)
Q Consensus 384 vp~~~~-~~l~~~d~i---------------~~~ig~~-----------~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll 435 (623)
+|+... ...++.+++ +...+.. ..+++.+.+||+|++ |++++++++.+|+++
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 666531 011122211 1122222 223445679999999 899999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 436 LLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
||||||+|||+.....+... +..+.+ +.++|++||+.+....|++++.+.+|++...
T Consensus 160 llDEP~~~LD~~~~~~l~~~-l~~~~~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~ 216 (236)
T cd03253 160 LLDEATSALDTHTEREIQAA-LRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVER 216 (236)
T ss_pred EEeCCcccCCHHHHHHHHHH-HHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEee
Confidence 99999999999999999994 455666 8899999999986566999999999988654
No 241
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.4e-24 Score=240.08 Aligned_cols=166 Identities=17% Similarity=0.172 Sum_probs=134.1
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhce
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGL 382 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G~ 382 (623)
+++++||++.|++..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+...
T Consensus 4 ~l~~~~l~~~~~~~~il~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 4 YLSFDGIGKTFPGVKALDDISFDCRAG-QVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred eEEEeeeEEEECCEEEEeeeeEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 5789999999987655 999999999 99999999999999999999 775421 11124
Q ss_pred eecCCCC--CCccH------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974 383 YLPAKNH--PRLPW------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (623)
Q Consensus 383 ~vp~~~~--~~l~~------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll 435 (623)
|+|+... ..+++ +..++..+|+....++.+++|||||+ |++++++++.+|+++
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ll 162 (501)
T PRK11288 83 IIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVI 162 (501)
T ss_pred EEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 6777531 11111 12345566776667888999999999 899999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (623)
Q Consensus 436 LLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~ 493 (623)
||||||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+|++++.+.+|++..
T Consensus 163 lLDEPt~~LD~~~~~~l~~-~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~ 220 (501)
T PRK11288 163 AFDEPTSSLSAREIEQLFR-VIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220 (501)
T ss_pred EEcCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999998 45556667889999999987 567899999999998754
No 242
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.91 E-value=5.8e-24 Score=204.01 Aligned_cols=149 Identities=21% Similarity=0.253 Sum_probs=116.1
Q ss_pred EEEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--------hhceeecCCCC-CCcc
Q 006974 327 MTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNH-PRLP 393 (623)
Q Consensus 327 l~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--------~~G~~vp~~~~-~~l~ 393 (623)
++++|+++.|++ +.+ ++||++.+| ++++|+||||||||||++++ |++.+-+ +...|+|++.. ...+
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~t 79 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPG-DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGT 79 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCcccccc
Confidence 357899999953 344 999999999 99999999999999999999 6654321 11246666542 1123
Q ss_pred HHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcC
Q 006974 394 WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTH 472 (623)
Q Consensus 394 ~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH 472 (623)
..+++.. + ....||+|++ |+.++++++.+|+++||||||+|+|+.....+...+.+ + +.|+|++||
T Consensus 80 v~~nl~~--~-------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~-~---~~tiiivsh 146 (166)
T cd03223 80 LREQLIY--P-------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKE-L---GITVISVGH 146 (166)
T ss_pred HHHHhhc--c-------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHH-h---CCEEEEEeC
Confidence 3343321 1 5789999999 89999999999999999999999999999999885544 3 689999999
Q ss_pred chhHHhhccccceeeCc
Q 006974 473 YADLSCLKDKDTRFENA 489 (623)
Q Consensus 473 ~~~l~~~~~~~~~i~~g 489 (623)
+.++..+||+++.+.++
T Consensus 147 ~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 147 RPSLWKFHDRVLDLDGE 163 (166)
T ss_pred ChhHHhhCCEEEEEcCC
Confidence 98877789988777654
No 243
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.1e-23 Score=217.66 Aligned_cols=168 Identities=20% Similarity=0.217 Sum_probs=130.3
Q ss_pred CCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh-----hh------------------
Q 006974 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-----LM------------------ 377 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~-----~~------------------ 377 (623)
..+++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |++. +.
T Consensus 22 ~~~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 22 KVVFDTQNLNLWYGEDHALKNINLDIHEN-EVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred ceEEEEeeeEEEECCcceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 446899999999987555 999999999 99999999999999999999 7764 10
Q ss_pred ---hhhceeecCCCCC-CccHHHHHH----------------------HHc----CCchhhhcccccccHHHH-HHHHHH
Q 006974 378 ---SKAGLYLPAKNHP-RLPWFDLIL----------------------ADI----GDHQSLEQNLSTFSGHIS-RIVDIL 426 (623)
Q Consensus 378 ---a~~G~~vp~~~~~-~l~~~d~i~----------------------~~i----g~~~~~~~~~stfS~g~~-rl~~~~ 426 (623)
.+...|+|+.... ..++.+++. ..+ +..+.+++.+..||+||+ |+++++
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~lar 180 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIAR 180 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHH
Confidence 0113466766321 012223221 112 122345678899999999 899999
Q ss_pred HhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 427 ~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+++.+|+++||||||+|+|+.....+...+ ..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 181 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~-~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~ 247 (271)
T PRK14238 181 CLAIEPDVILMDEPTSALDPISTLKVEELV-QELKK-DYSIIIVTHNMQQAARISDKTAFFLNGYVNEY 247 (271)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHH-HHHHc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999954 45555 689999999988 5679999999999998654
No 244
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.91 E-value=3.8e-24 Score=215.91 Aligned_cols=152 Identities=18% Similarity=0.236 Sum_probs=120.4
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--------------hhceeecCCCC--CCccHH---------
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------------KAGLYLPAKNH--PRLPWF--------- 395 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--------------~~G~~vp~~~~--~~l~~~--------- 395 (623)
++||++.+| ++++|+||||||||||+|++ |++.+.+ ....|+|+... ..++..
T Consensus 3 ~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~ 81 (230)
T TIGR01184 3 GVNLTIQQG-EFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDR 81 (230)
T ss_pred ceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHh
Confidence 578999999 99999999999999999999 7764311 01136666531 111221
Q ss_pred --------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 006974 396 --------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460 (623)
Q Consensus 396 --------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l 460 (623)
..++..+|+.+..++.+++|||||+ |+.++++++.+|+++||||||+|||+.....+...+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~ 161 (230)
T TIGR01184 82 VLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIW 161 (230)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH
Confidence 2345566777778889999999999 8999999999999999999999999999999999555543
Q ss_pred hcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 461 RDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 461 ~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
.+.+.|+|++||+.+ +..+|+++..+.+|++...
T Consensus 162 ~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~ 196 (230)
T TIGR01184 162 EEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANI 196 (230)
T ss_pred HhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecc
Confidence 445889999999987 5789999999999988654
No 245
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.91 E-value=3.4e-24 Score=210.78 Aligned_cols=153 Identities=15% Similarity=0.192 Sum_probs=119.6
Q ss_pred EEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh---------------hhceeecCCCC
Q 006974 327 MTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS---------------KAGLYLPAKNH 389 (623)
Q Consensus 327 l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a---------------~~G~~vp~~~~ 389 (623)
++++|++++|++..+ ++||++.+| ++++|+||||||||||++++ |+..+-+ +...|+|+...
T Consensus 2 l~~~~l~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (195)
T PRK13541 2 LSLHQLQFNIEQKNLFDLSITFLPS-AITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLG 80 (195)
T ss_pred eEEEEeeEEECCcEEEEEEEEEcCC-cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcC
Confidence 678999999987655 899999999 99999999999999999999 6654211 11235555431
Q ss_pred C--CccHH----------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHH
Q 006974 390 P--RLPWF----------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGV 450 (623)
Q Consensus 390 ~--~l~~~----------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~ 450 (623)
. ..++. ..++..+|+.+..++.+++||+|++ |+.++++++.+|+++||||||+|+|+....
T Consensus 81 ~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~ 160 (195)
T PRK13541 81 LKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRD 160 (195)
T ss_pred CCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 1 11222 2334566777778899999999999 899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCchhHHhhcc
Q 006974 451 ALATSILQYLRDRVGLAVVTTHYADLSCLKD 481 (623)
Q Consensus 451 ~l~~all~~l~~~~~~vii~TH~~~l~~~~~ 481 (623)
.+...+ ....+.+.|+|++||+.+....++
T Consensus 161 ~l~~~l-~~~~~~~~tiii~sh~~~~i~~~~ 190 (195)
T PRK13541 161 LLNNLI-VMKANSGGIVLLSSHLESSIKSAQ 190 (195)
T ss_pred HHHHHH-HHHHhCCCEEEEEeCCccccchhh
Confidence 998844 445566889999999987554444
No 246
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.91 E-value=8.3e-24 Score=216.10 Aligned_cols=167 Identities=20% Similarity=0.278 Sum_probs=128.5
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhh--hhh-------------------hhhc
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SLM-------------------SKAG 381 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~--~~~-------------------a~~G 381 (623)
+++++||++.|++..+ ++||++.+| ++++|+||||||||||+++| |+. .+. .+.|
T Consensus 7 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 85 (252)
T CHL00131 7 ILEIKNLHASVNENEILKGLNLSINKG-EIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLG 85 (252)
T ss_pred eEEEEeEEEEeCCEEeeecceeEEcCC-cEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheee
Confidence 5889999999987555 999999999 99999999999999999999 752 211 0112
Q ss_pred -eeecCCCC--CCccH----------------------------HHHHHHHcCCc-hhhhcccc-cccHHHH-HHHHHHH
Q 006974 382 -LYLPAKNH--PRLPW----------------------------FDLILADIGDH-QSLEQNLS-TFSGHIS-RIVDILE 427 (623)
Q Consensus 382 -~~vp~~~~--~~l~~----------------------------~d~i~~~ig~~-~~~~~~~s-tfS~g~~-rl~~~~~ 427 (623)
.|+|+... ..++. +..++..+|+. ...++.+. .||+||+ |++++++
T Consensus 86 ~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~a 165 (252)
T CHL00131 86 IFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQM 165 (252)
T ss_pred EEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHH
Confidence 24555421 00011 12345556665 34567776 5999999 8999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHH-hh-ccccceeeCceEEEe
Q 006974 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CL-KDKDTRFENAATEFS 494 (623)
Q Consensus 428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~-~~-~~~~~~i~~g~~~~~ 494 (623)
++.+|+++||||||+|||+.....+... +..+.+.+.|+|++||+.++. .+ |++++.+.+|++...
T Consensus 166 l~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 166 ALLDSELAILDETDSGLDIDALKIIAEG-INKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe
Confidence 9999999999999999999999999994 445666688999999998855 45 899999999988755
No 247
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.91 E-value=9.9e-24 Score=223.77 Aligned_cols=168 Identities=18% Similarity=0.182 Sum_probs=132.7
Q ss_pred CcEEEceeeeecCC----cc-c-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------
Q 006974 325 SEMTVGSLSKGISD----FP-V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------- 377 (623)
Q Consensus 325 ~~l~~~~l~~~y~~----~~-v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------- 377 (623)
..++++||++.|+. .. + ++||++.+| ++++|+|+||||||||+++| |++.+-
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~G-e~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAG-ETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCC-CEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 46899999999952 22 3 999999999 99999999999999999999 776431
Q ss_pred ------hhhceeecCCCCC----CccH----------------------HHHHHHHcCCch---hhhcccccccHHHH-H
Q 006974 378 ------SKAGLYLPAKNHP----RLPW----------------------FDLILADIGDHQ---SLEQNLSTFSGHIS-R 421 (623)
Q Consensus 378 ------a~~G~~vp~~~~~----~l~~----------------------~d~i~~~ig~~~---~~~~~~stfS~g~~-r 421 (623)
.+...|+|++... .+.. +..++..+|+.+ .+++.++.|||||+ |
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QR 169 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQR 169 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHH
Confidence 0123578887421 1111 123355566543 35678999999999 8
Q ss_pred HHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhH-HhhccccceeeCceEEEe
Q 006974 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (623)
Q Consensus 422 l~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l-~~~~~~~~~i~~g~~~~~ 494 (623)
+.++++++.+|+|||+||||+|||+..+..+... +..+.+ .+.++|++|||+.+ ..+||++.++.+|+++..
T Consensus 170 v~IArAL~~~P~llilDEPts~LD~~~~~~i~~l-L~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 170 VMIAMALLCRPKLLIADEPTTALDVTVQAQIMTL-LNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999994 445554 48899999999885 468999999999998765
No 248
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.8e-23 Score=216.43 Aligned_cols=167 Identities=17% Similarity=0.248 Sum_probs=128.8
Q ss_pred CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------------
Q 006974 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------ 377 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------------ 377 (623)
-+++++||++.|++..+ +++|++.+| ++++|+||||||||||||+| |+..+.
T Consensus 19 ~~l~~~nl~~~~~~~~~l~~vs~~i~~G-e~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~ 97 (274)
T PRK14265 19 SVFEVEGVKVFYGGFLALVDVHLKIPAK-KIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97 (274)
T ss_pred ceEEEeeEEEEeCCeEEEeeeeeEEcCC-CEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhH
Confidence 36899999999987655 999999999 99999999999999999999 665310
Q ss_pred --hhhceeecCCCCC-CccHHHHH--------------------HHHcCC----chhhhcccccccHHHH-HHHHHHHhc
Q 006974 378 --SKAGLYLPAKNHP-RLPWFDLI--------------------LADIGD----HQSLEQNLSTFSGHIS-RIVDILELV 429 (623)
Q Consensus 378 --a~~G~~vp~~~~~-~l~~~d~i--------------------~~~ig~----~~~~~~~~stfS~g~~-rl~~~~~l~ 429 (623)
.+...|+|+.... ..++++++ +..+++ .+..++.++.||+||+ |++++++++
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~ 177 (274)
T PRK14265 98 KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIA 177 (274)
T ss_pred HHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 0112467776321 01222222 223333 2345678899999999 899999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceee---------CceEEEe
Q 006974 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE---------NAATEFS 494 (623)
Q Consensus 430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~---------~g~~~~~ 494 (623)
.+|+++||||||+|||+.....+...+. .+.+ +.++|++||+.+ +..+|++++.+. +|++..+
T Consensus 178 ~~p~lllLDEPt~~LD~~~~~~l~~~L~-~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~ 250 (274)
T PRK14265 178 MKPDVLLMDEPCSALDPISTRQVEELCL-ELKE-QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEF 250 (274)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHH-HHhc-CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999554 4554 589999999987 668999999997 6776543
No 249
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.5e-23 Score=216.90 Aligned_cols=167 Identities=19% Similarity=0.218 Sum_probs=130.1
Q ss_pred CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-----h-------------------
Q 006974 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M------------------- 377 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-----~------------------- 377 (623)
..++++|+++.|++..+ ++||++.+| ++++|+||||||||||+|++ |+..+ .
T Consensus 24 ~~l~~~nl~~~~~~~~il~~vs~~i~~G-e~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~ 102 (272)
T PRK14236 24 TALEVRNLNLFYGDKQALFDISMRIPKN-RVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVA 102 (272)
T ss_pred cEEEEEEEEEEECCeeEeeeEEEEEcCC-CEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHH
Confidence 46899999999987655 999999999 99999999999999999999 77531 0
Q ss_pred --hhhceeecCCCCC-CccHHHH----------------------HHHHcCCc----hhhhcccccccHHHH-HHHHHHH
Q 006974 378 --SKAGLYLPAKNHP-RLPWFDL----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDILE 427 (623)
Q Consensus 378 --a~~G~~vp~~~~~-~l~~~d~----------------------i~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~ 427 (623)
.+...|+|+.... ..++.++ ++..+++. ...++.+.+||+|++ |++++++
T Consensus 103 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lara 182 (272)
T PRK14236 103 ELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARA 182 (272)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHH
Confidence 0112466665310 0122222 22333443 235677899999999 8999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
++.+|+++||||||+|+|+.....+...+. .+.+ +.++|++||+.+ +..+|++++.+.+|++...
T Consensus 183 l~~~p~lllLDEPt~gLD~~~~~~l~~~L~-~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~ 248 (272)
T PRK14236 183 IAIEPEVLLLDEPTSALDPISTLKIEELIT-ELKS-KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEY 248 (272)
T ss_pred HHCCCCEEEEeCCcccCCHHHHHHHHHHHH-HHHh-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEec
Confidence 999999999999999999999999998554 4555 689999999987 5679999999999998654
No 250
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.91 E-value=7.5e-24 Score=238.84 Aligned_cols=167 Identities=17% Similarity=0.196 Sum_probs=132.5
Q ss_pred cEEEceeeeecCC----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-----h----------------
Q 006974 326 EMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M---------------- 377 (623)
Q Consensus 326 ~l~~~~l~~~y~~----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-----~---------------- 377 (623)
+++++||++.|++ ..+ ++||++.+| ++++|+||||||||||||++ |++.+ .
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~G-e~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAG-ETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCC-CEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 5889999999963 234 999999999 99999999999999999999 77652 0
Q ss_pred ------h-hhceeecCCCCC-C---ccH----------------------HHHHHHHcCCch---hhhcccccccHHHH-
Q 006974 378 ------S-KAGLYLPAKNHP-R---LPW----------------------FDLILADIGDHQ---SLEQNLSTFSGHIS- 420 (623)
Q Consensus 378 ------a-~~G~~vp~~~~~-~---l~~----------------------~d~i~~~ig~~~---~~~~~~stfS~g~~- 420 (623)
. +...|+|+.... . ..+ ++.++..+|+.+ ..++.+++|||||+
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~q 163 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQ 163 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHH
Confidence 0 113477776410 0 111 123455667654 35889999999999
Q ss_pred HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 421 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 421 rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|+++|++++.+|+++||||||+|||+.....+.. ++..+.++ +.|+|++||+.+ +..+||++..+.+|++..+
T Consensus 164 rv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~ 238 (529)
T PRK15134 164 RVMIAMALLTRPELLIADEPTTALDVSVQAQILQ-LLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQ 238 (529)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHH-HHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEe
Confidence 8999999999999999999999999999999999 55556554 889999999988 5679999999999987653
No 251
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.91 E-value=7.3e-24 Score=213.17 Aligned_cols=166 Identities=21% Similarity=0.287 Sum_probs=129.9
Q ss_pred cEEEceeeeecCC----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh---hhh----------------h
Q 006974 326 EMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS---LMS----------------K 379 (623)
Q Consensus 326 ~l~~~~l~~~y~~----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~---~~a----------------~ 379 (623)
.+.++||++.|++ ..+ ++||++.+| ++++|+||||||||||+|++ |+.. +.+ +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESG-QVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCC-eEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcc
Confidence 4568899999954 234 899999999 99999999999999999999 7765 321 1
Q ss_pred hceeecCCCC--CCccHHHH-------------------------HHHHcCCchhhhcccccccHHHH-HHHHHHHhcCC
Q 006974 380 AGLYLPAKNH--PRLPWFDL-------------------------ILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (623)
Q Consensus 380 ~G~~vp~~~~--~~l~~~d~-------------------------i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~ 431 (623)
...|+|+... ..+++.++ ++..+++.+..++.++.||+|++ |++++++++.+
T Consensus 82 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 161 (226)
T cd03234 82 CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWD 161 (226)
T ss_pred cEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhC
Confidence 2346676541 11222221 33344555556778899999999 79999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCch--hHHhhccccceeeCceEEE
Q 006974 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA--DLSCLKDKDTRFENAATEF 493 (623)
Q Consensus 432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~--~l~~~~~~~~~i~~g~~~~ 493 (623)
|+++||||||+|+|+.....+... +..+.+.+.|+|++||+. ++..+||++..+.+|++..
T Consensus 162 p~illlDEP~~gLD~~~~~~~~~~-l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~ 224 (226)
T cd03234 162 PKVLILDEPTSGLDSFTALNLVST-LSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVY 224 (226)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHH-HHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEe
Confidence 999999999999999999999994 445566688999999997 4788999999999998754
No 252
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.7e-23 Score=215.25 Aligned_cols=167 Identities=21% Similarity=0.255 Sum_probs=128.9
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------h------------------
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------S------------------ 378 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------a------------------ 378 (623)
.++++||++.|++..+ ++||++.+| ++++|+||||+||||||+++ |+..+- .
T Consensus 7 ~l~~~nl~~~~~~~~il~~is~~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~ 85 (261)
T PRK14258 7 AIKVNNLSFYYDTQKILEGVSMEIYQS-KVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNR 85 (261)
T ss_pred eEEEeeEEEEeCCeeEeeceEEEEcCC-cEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHH
Confidence 6889999999987554 999999999 99999999999999999999 775431 0
Q ss_pred --hhceeecCCCC-CCccHHHHH----------------------HHHcCCc----hhhhcccccccHHHH-HHHHHHHh
Q 006974 379 --KAGLYLPAKNH-PRLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (623)
Q Consensus 379 --~~G~~vp~~~~-~~l~~~d~i----------------------~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~l 428 (623)
+...|+|+... ...++.+++ +..+++. ...++.+.+||+||+ |+++++++
T Consensus 86 ~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 165 (261)
T PRK14258 86 LRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARAL 165 (261)
T ss_pred hhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHH
Confidence 11234555421 012222222 2233432 234677899999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEcCchh-HHhhccccceeeC-----ceEEEe
Q 006974 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFEN-----AATEFS 494 (623)
Q Consensus 429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~-~~~~~vii~TH~~~-l~~~~~~~~~i~~-----g~~~~~ 494 (623)
+.+|+++||||||+|+|+.....+...+. .++ +.+.|+|++||+.+ +..+|++++.+.+ |++...
T Consensus 166 ~~~p~vllLDEP~~~LD~~~~~~l~~~l~-~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 237 (261)
T PRK14258 166 AVKPKVLLMDEPCFGLDPIASMKVESLIQ-SLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEF 237 (261)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHH-HHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEe
Confidence 99999999999999999999999999555 454 35889999999988 6689999999998 887654
No 253
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.91 E-value=3.3e-24 Score=200.90 Aligned_cols=140 Identities=21% Similarity=0.256 Sum_probs=111.3
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCC
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGD 404 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~ 404 (623)
++++|+++.|++..+ ++||++.+| ++++|+||||+|||||++++ +|.+.|..|...+... ..++
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~~~~G-e~~~i~G~nGsGKStLl~~l--------~G~~~~~~G~i~~~~~----~~i~- 66 (144)
T cd03221 1 IELENLSKTYGGKLLLKDISLTINPG-DRIGLVGRNGAGKSTLLKLI--------AGELEPDEGIVTWGST----VKIG- 66 (144)
T ss_pred CEEEEEEEEECCceEEEeeEEEECCC-CEEEEECCCCCCHHHHHHHH--------cCCCCCCceEEEECCe----EEEE-
Confidence 357899999986555 999999999 99999999999999999999 7766666653222110 0011
Q ss_pred chhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccc
Q 006974 405 HQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDK 482 (623)
Q Consensus 405 ~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~ 482 (623)
.+..||+|++ |++++++++.+|+++|+|||++|+|+.....+...+ ..+ +.++|++||+.+ +..+|++
T Consensus 67 ------~~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l-~~~---~~til~~th~~~~~~~~~d~ 136 (144)
T cd03221 67 ------YFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEAL-KEY---PGTVILVSHDRYFLDQVATK 136 (144)
T ss_pred ------EEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHc---CCEEEEEECCHHHHHHhCCE
Confidence 1122999999 799999999999999999999999999999988844 333 579999999987 5578999
Q ss_pred cceeeCce
Q 006974 483 DTRFENAA 490 (623)
Q Consensus 483 ~~~i~~g~ 490 (623)
+..+.+|+
T Consensus 137 v~~l~~g~ 144 (144)
T cd03221 137 IIELEDGK 144 (144)
T ss_pred EEEEeCCC
Confidence 88887763
No 254
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.91 E-value=1.1e-23 Score=214.88 Aligned_cols=162 Identities=19% Similarity=0.271 Sum_probs=127.7
Q ss_pred EEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh------h------------hhhceeecCC
Q 006974 328 TVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------M------------SKAGLYLPAK 387 (623)
Q Consensus 328 ~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~------~------------a~~G~~vp~~ 387 (623)
+++||++. . .+ ++||++.+| ++++|+||||||||||++++ |+... . .+...|+|+.
T Consensus 2 ~~~~l~~~--~-~l~~vsl~i~~G-ei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~ 77 (248)
T PRK03695 2 QLNDVAVS--T-RLGPLSAEVRAG-EILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQ 77 (248)
T ss_pred cccccchh--c-eecceEEEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEeccc
Confidence 45667765 1 34 999999999 99999999999999999999 66531 0 0112467765
Q ss_pred CC--CCccH--------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcC-------CCcEEEE
Q 006974 388 NH--PRLPW--------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS-------RESLVLI 437 (623)
Q Consensus 388 ~~--~~l~~--------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~-------~~~LlLL 437 (623)
.. ..++. ++.++..+|+.+..++.+.+||+||+ |+.++++++. +|+++||
T Consensus 78 ~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llll 157 (248)
T PRK03695 78 QTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLL 157 (248)
T ss_pred CccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEE
Confidence 31 01111 24556777888888899999999999 7999999986 6799999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 438 DEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
||||+|||+.....+.. ++..+.+++.|+|++||+.+ +..+|+++..+.+|++...
T Consensus 158 DEPt~~LD~~~~~~l~~-~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~ 214 (248)
T PRK03695 158 DEPMNSLDVAQQAALDR-LLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLAS 214 (248)
T ss_pred cCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999998 55556666889999999987 7789999999999998654
No 255
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.7e-23 Score=214.03 Aligned_cols=166 Identities=16% Similarity=0.188 Sum_probs=128.4
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------------
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------- 377 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------------- 377 (623)
+++++|+++.|++..+ ++||++.+| ++++|+||||||||||+|++ |+..+.
T Consensus 6 ~i~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 84 (253)
T PRK14261 6 ILSTKNLNLWYGEKHALYDITISIPKN-RVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVA 84 (253)
T ss_pred eEEEeeeEEEECCeeeeeeeEEEECCC-cEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhh
Confidence 5789999999987665 999999999 99999999999999999999 654210
Q ss_pred -hhhceeecCCCCCC-ccHHH----------------------HHHHHcCCc----hhhhcccccccHHHH-HHHHHHHh
Q 006974 378 -SKAGLYLPAKNHPR-LPWFD----------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (623)
Q Consensus 378 -a~~G~~vp~~~~~~-l~~~d----------------------~i~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~l 428 (623)
.+...|+|+..... .++.+ .++..+++. ..+++.+..||+|++ |+++++++
T Consensus 85 ~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 164 (253)
T PRK14261 85 LRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTL 164 (253)
T ss_pred hhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHH
Confidence 01124666653110 11111 122333432 345678899999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+.+|+++||||||+|+|+.....+... +..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 165 ~~~p~lllLDEP~~gLD~~~~~~l~~~-l~~~~~-~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14261 165 AVNPEVILMDEPCSALDPIATAKIEDL-IEDLKK-EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEF 229 (253)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHhh-CceEEEEEcCHHHHHhhCCEEEEEECCEEEEc
Confidence 999999999999999999999999884 445555 589999999987 5579999999999988654
No 256
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=8.2e-24 Score=203.55 Aligned_cols=166 Identities=20% Similarity=0.235 Sum_probs=133.1
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhhhceee
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLYL 384 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~~G~~v 384 (623)
|+.+|++++..++.+ +++|++.+| ++++|+||||+|||||||.+ |-..+ ||+.-...
T Consensus 2 i~a~nls~~~~Gr~ll~~vsl~~~pG-ev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVl 80 (259)
T COG4559 2 IRAENLSYSLAGRRLLDGVSLDLRPG-EVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVL 80 (259)
T ss_pred eeeeeeEEEeecceeccCcceeccCC-cEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhc
Confidence 678899999977666 999999999 99999999999999999999 44331 33333344
Q ss_pred cCCCCCCccH-------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcC------CC
Q 006974 385 PAKNHPRLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS------RE 432 (623)
Q Consensus 385 p~~~~~~l~~-------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~------~~ 432 (623)
||.....|++ .++.++..+......+...+||||++ |+.+++.++. ++
T Consensus 81 pQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~ 160 (259)
T COG4559 81 PQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSG 160 (259)
T ss_pred ccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCC
Confidence 5543222222 34567777777778889999999999 7888876542 44
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHH-hhccccceeeCceEEEe
Q 006974 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (623)
Q Consensus 433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~-~~~~~~~~i~~g~~~~~ 494 (623)
..++|||||+.||+.....+.. +.+.+...|+.|+++-||++++ .|||+++.+.+|++...
T Consensus 161 r~L~LDEPtsaLDi~HQ~~tl~-laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~ 222 (259)
T COG4559 161 RWLFLDEPTSALDIAHQHHTLR-LARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIAS 222 (259)
T ss_pred ceEEecCCccccchHHHHHHHH-HHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeec
Confidence 6999999999999999999999 7777888889999999999975 69999999999998765
No 257
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.91 E-value=1.8e-23 Score=216.22 Aligned_cols=165 Identities=17% Similarity=0.160 Sum_probs=131.2
Q ss_pred cEEEceeeeecC--Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh------------------hhhhce
Q 006974 326 EMTVGSLSKGIS--DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAGL 382 (623)
Q Consensus 326 ~l~~~~l~~~y~--~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~------------------~a~~G~ 382 (623)
.++++||+++|+ +..+ ++||+|.+| ++++|+|||||||||||++| |++.. +.+...
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~G-e~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPG-QRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEE
Confidence 478999999994 3444 999999999 99999999999999999999 66521 112335
Q ss_pred eecCCCCCCcc--H--------------HHHHHHHcCCchhhhccccc-----------ccHHHH-HHHHHHHhcCCCcE
Q 006974 383 YLPAKNHPRLP--W--------------FDLILADIGDHQSLEQNLST-----------FSGHIS-RIVDILELVSRESL 434 (623)
Q Consensus 383 ~vp~~~~~~l~--~--------------~d~i~~~ig~~~~~~~~~st-----------fS~g~~-rl~~~~~l~~~~~L 434 (623)
|+|+... .++ + +...+..+|+.+.+++.+.. ||+||+ |+.++++++.+|++
T Consensus 81 ~v~q~~~-lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 81 VIPQKVF-IFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EECCCcc-cchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 7787652 111 1 22345667777777776655 999999 79999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 435 lLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
+||||||+|+|+.....+...+.+ +. .++|+|++||+++....|+++..+.+|++...
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~-~~-~~~tii~isH~~~~i~~~dri~vl~~G~i~~~ 217 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQ-AF-ADCTVILSEHRIEAMLECQRFLVIEENKVRQY 217 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHH-hc-CCCEEEEEECCHHHHHhCCEEEEecCCeEeec
Confidence 999999999999999999985554 43 47899999999986567999999999988765
No 258
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.91 E-value=1.1e-23 Score=216.80 Aligned_cols=151 Identities=15% Similarity=0.121 Sum_probs=117.7
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhh----hc--eeecCCCC--CCccHHH----------------
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK----AG--LYLPAKNH--PRLPWFD---------------- 396 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~----~G--~~vp~~~~--~~l~~~d---------------- 396 (623)
+++|++.+| ++++|+|||||||||||+++ |++.+.+. .| .++++... ..+++.+
T Consensus 42 ~is~~i~~G-e~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~ 120 (264)
T PRK13546 42 DISLKAYEG-DVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEI 120 (264)
T ss_pred eeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHH
Confidence 899999999 99999999999999999999 66543210 01 12222210 1122222
Q ss_pred -----HHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Q 006974 397 -----LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVT 470 (623)
Q Consensus 397 -----~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~ 470 (623)
.++..+++.+.+++.+.+||+||+ |++++++++.+|+++||||||+|+|+.....+...+ ..+.+.+.|+|++
T Consensus 121 ~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L-~~~~~~g~tiIii 199 (264)
T PRK13546 121 KAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKI-YEFKEQNKTIFFV 199 (264)
T ss_pred HHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHH-HHHHHCCCEEEEE
Confidence 234445667778889999999999 899999999999999999999999999999999954 4456678899999
Q ss_pred cCchh-HHhhccccceeeCceEEEe
Q 006974 471 THYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 471 TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
||+.+ +..+|++++.+.+|++...
T Consensus 200 sH~~~~i~~~~d~i~~l~~G~i~~~ 224 (264)
T PRK13546 200 SHNLGQVRQFCTKIAWIEGGKLKDY 224 (264)
T ss_pred cCCHHHHHHHcCEEEEEECCEEEEe
Confidence 99987 5678999999999988644
No 259
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.91 E-value=1.1e-23 Score=236.02 Aligned_cols=167 Identities=13% Similarity=0.126 Sum_probs=133.5
Q ss_pred cEEEceeeeecC---Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-h--------------------h
Q 006974 326 EMTVGSLSKGIS---DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-M--------------------S 378 (623)
Q Consensus 326 ~l~~~~l~~~y~---~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-~--------------------a 378 (623)
.++++|+++.|+ +..+ ++||++.+| ++++|+||||||||||||++ |++.+ . .
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~G-e~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~ 335 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRG-EILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR 335 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCC-cEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence 578899999993 3334 999999999 99999999999999999999 77642 1 0
Q ss_pred hhceeecCCCC-----CC--------cc------------------HHHHHHHHcCCch-hhhcccccccHHHH-HHHHH
Q 006974 379 KAGLYLPAKNH-----PR--------LP------------------WFDLILADIGDHQ-SLEQNLSTFSGHIS-RIVDI 425 (623)
Q Consensus 379 ~~G~~vp~~~~-----~~--------l~------------------~~d~i~~~ig~~~-~~~~~~stfS~g~~-rl~~~ 425 (623)
+.-.|+|+... .. ++ .++.++..+++.+ ..++.+.+|||||+ |+.+|
T Consensus 336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la 415 (500)
T TIGR02633 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLA 415 (500)
T ss_pred CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHH
Confidence 11246666520 00 00 0234566778753 57889999999999 89999
Q ss_pred HHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 426 ~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
++++.+|+++||||||+|||+.....+.. ++..+.+.|.|+|++|||.+ +..+|++++.+.+|++.++
T Consensus 416 ~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~ 484 (500)
T TIGR02633 416 KMLLTNPRVLILDEPTRGVDVGAKYEIYK-LINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGD 484 (500)
T ss_pred HHHhhCCCEEEEcCCCCCcCHhHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999998 55667777889999999987 6689999999999988764
No 260
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.91 E-value=9.9e-24 Score=211.77 Aligned_cols=158 Identities=20% Similarity=0.239 Sum_probs=122.0
Q ss_pred EEEceeeeecCC-------ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------h---------
Q 006974 327 MTVGSLSKGISD-------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------S--------- 378 (623)
Q Consensus 327 l~~~~l~~~y~~-------~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------a--------- 378 (623)
++++||++.|++ ..+ ++||++.+| ++++|+||||||||||+|++ |++.+. .
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAG-ECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 678999999962 234 999999999 99999999999999999999 665321 0
Q ss_pred ---------hhceeecCCCCC--CccH---------------------HHHHHHHcCCchh-hhcccccccHHHH-HHHH
Q 006974 379 ---------KAGLYLPAKNHP--RLPW---------------------FDLILADIGDHQS-LEQNLSTFSGHIS-RIVD 424 (623)
Q Consensus 379 ---------~~G~~vp~~~~~--~l~~---------------------~d~i~~~ig~~~~-~~~~~stfS~g~~-rl~~ 424 (623)
+...|+|+.... .+.. +..++..+|+.+. .++.+.+||+||+ |+++
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~l 160 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNI 160 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHH
Confidence 112467765421 0111 1224556676654 4678999999999 7999
Q ss_pred HHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHH-hhcccccee
Q 006974 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRF 486 (623)
Q Consensus 425 ~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~-~~~~~~~~i 486 (623)
+++++.+|+++||||||+|+|+.....+... +..+++++.|+|++||+.++. .+||+++.+
T Consensus 161 aral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 161 ARGFIADYPILLLDEPTASLDAANRQVVVEL-IAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 9999999999999999999999999999994 455666688999999998854 688876554
No 261
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5.8e-24 Score=237.64 Aligned_cols=163 Identities=18% Similarity=0.167 Sum_probs=131.5
Q ss_pred EceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhceeec
Q 006974 329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLYLP 385 (623)
Q Consensus 329 ~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G~~vp 385 (623)
++|++++|++..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+.-.|+|
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~G-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRPH-SIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 3689999987655 999999999 99999999999999999999 776421 01124777
Q ss_pred CCCC--CCccH------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEe
Q 006974 386 AKNH--PRLPW------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (623)
Q Consensus 386 ~~~~--~~l~~------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLD 438 (623)
+... ..+++ +..++..+|+....++.+++|||||+ |+++|++++.+|+++|||
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLD 159 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMD 159 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 7631 11111 12345566776677889999999999 899999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974 439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (623)
Q Consensus 439 Ep~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~ 493 (623)
|||+|||+.....+.. ++..+.+.|.++|++||+.+ +..+|++++.+.+|++..
T Consensus 160 EPt~~LD~~~~~~l~~-~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~ 214 (491)
T PRK10982 160 EPTSSLTEKEVNHLFT-IIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIA 214 (491)
T ss_pred CCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999 55566777889999999987 567999999999998764
No 262
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.91 E-value=8.4e-24 Score=236.32 Aligned_cols=169 Identities=17% Similarity=0.180 Sum_probs=132.2
Q ss_pred CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh------------h---------hhh
Q 006974 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------M---------SKA 380 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~------------~---------a~~ 380 (623)
.+++++|+++.|++..+ ++||++.+| ++++|+||||||||||||++ |+... . .+.
T Consensus 259 ~~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 259 PRIVLNNGVVSYNDRPILHNLSWQVNPG-EHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred ceEEEeceEEEECCeeEEeeceEEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhh
Confidence 36889999999987655 999999999 99999999999999999999 76432 0 011
Q ss_pred ceeecCCCCC--C--cc-------------------------HHHHHHHHcCCch-hhhcccccccHHHH-HHHHHHHhc
Q 006974 381 GLYLPAKNHP--R--LP-------------------------WFDLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELV 429 (623)
Q Consensus 381 G~~vp~~~~~--~--l~-------------------------~~d~i~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~ 429 (623)
..|+|+.... . .. .++.++..+|+.+ ..++++++|||||+ |++++++++
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~ 417 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALV 417 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHh
Confidence 2355553210 0 00 1234566778876 77889999999999 899999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEcCchhHH-h-hccccceeeCceEEEec
Q 006974 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRV-GLAVVTTHYADLS-C-LKDKDTRFENAATEFSL 495 (623)
Q Consensus 430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~-~~vii~TH~~~l~-~-~~~~~~~i~~g~~~~~~ 495 (623)
.+|+++||||||+|||+.....+.. ++..+.+++ .|+|++||+.+.. . +|++++.+.+|++....
T Consensus 418 ~~p~lllLDEPt~gLD~~~~~~l~~-~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 418 KHPTLLILDEPLQGLDPLNRQLVRR-FVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred cCCCEEEEcCccccCCHHHHHHHHH-HHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 9999999999999999999999999 455565555 4699999998844 5 58889999999876553
No 263
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=9.9e-24 Score=237.88 Aligned_cols=161 Identities=16% Similarity=0.164 Sum_probs=127.7
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--------hhceeecCCCCC--Ccc
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNHP--RLP 393 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--------~~G~~vp~~~~~--~l~ 393 (623)
++++|++++|++..+ ++||++.+| ++++|+||||||||||||++ |++.+.. ....|+|+.... .++
T Consensus 2 l~i~~ls~~~~~~~il~~vsl~i~~G-e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~t 80 (530)
T PRK15064 2 LSTANITMQFGAKPLFENISVKFGGG-NRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFT 80 (530)
T ss_pred EEEEEEEEEeCCcEeEeCCEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCc
Confidence 678999999987665 999999999 99999999999999999999 7765321 112366665311 111
Q ss_pred H-----------------------------------------------------HHHHHHHcCCchhh-hcccccccHHH
Q 006974 394 W-----------------------------------------------------FDLILADIGDHQSL-EQNLSTFSGHI 419 (623)
Q Consensus 394 ~-----------------------------------------------------~d~i~~~ig~~~~~-~~~~stfS~g~ 419 (623)
+ +..++..+|+.+.. ++.+++|||||
T Consensus 81 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq 160 (530)
T PRK15064 81 VLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGW 160 (530)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHH
Confidence 1 12345556665433 46789999999
Q ss_pred H-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEE
Q 006974 420 S-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (623)
Q Consensus 420 ~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~ 492 (623)
+ |+++|++++.+|+++||||||+|||+.....+...+. +.+.|||++||+.+ +..+|++++.+.+|++.
T Consensus 161 ~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~ 231 (530)
T PRK15064 161 KLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLN----ERNSTMIIISHDRHFLNSVCTHMADLDYGELR 231 (530)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH----hCCCeEEEEeCCHHHHHhhcceEEEEeCCEEE
Confidence 9 8999999999999999999999999999998888442 34789999999988 67899999999999875
No 264
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=8e-24 Score=238.67 Aligned_cols=163 Identities=19% Similarity=0.254 Sum_probs=132.1
Q ss_pred CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--------hhceeecCCCC----
Q 006974 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNH---- 389 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--------~~G~~vp~~~~---- 389 (623)
..++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |+..+.. ....|+|+...
T Consensus 318 ~~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 396 (530)
T PRK15064 318 NALEVENLTKGFDNGPLFKNLNLLLEAG-ERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFE 396 (530)
T ss_pred ceEEEEeeEEeeCCceeecCcEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCC
Confidence 47899999999987655 999999999 99999999999999999999 7764321 11246777531
Q ss_pred CCccHH----------------HHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHH
Q 006974 390 PRLPWF----------------DLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVA 451 (623)
Q Consensus 390 ~~l~~~----------------d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~ 451 (623)
..+++. +.++..+|+. +..++++++|||||+ |++++++++.+|+++||||||+|||+.....
T Consensus 397 ~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 476 (530)
T PRK15064 397 NDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIES 476 (530)
T ss_pred CCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence 112222 2345667773 567899999999999 8999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEE
Q 006974 452 LATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (623)
Q Consensus 452 l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~ 492 (623)
+...+.+ + ++|+|++|||.+ +..+|++++.+.+|++.
T Consensus 477 l~~~l~~-~---~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~ 514 (530)
T PRK15064 477 LNMALEK-Y---EGTLIFVSHDREFVSSLATRIIEITPDGVV 514 (530)
T ss_pred HHHHHHH-C---CCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 9885443 3 569999999988 56789999999999876
No 265
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2e-23 Score=214.14 Aligned_cols=166 Identities=23% Similarity=0.252 Sum_probs=130.7
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------------------------
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------------------------ 378 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------------------------ 378 (623)
.+.++|++++|++..+ ++||++.+| ++++|+|||||||||||++| |+..+-.
T Consensus 10 ~i~~~~~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~ 88 (257)
T PRK14246 10 VFNISRLYLYINDKAILKDITIKIPNN-SIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKL 88 (257)
T ss_pred heeeeeEEEecCCceeEeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHH
Confidence 5789999999988766 999999999 99999999999999999999 6654211
Q ss_pred -hhceeecCCCCC--CccHHHH----------------------HHHHcCCc----hhhhcccccccHHHH-HHHHHHHh
Q 006974 379 -KAGLYLPAKNHP--RLPWFDL----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (623)
Q Consensus 379 -~~G~~vp~~~~~--~l~~~d~----------------------i~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~l 428 (623)
+...|+|+.... .+++.++ ++..+|+. +..++.+..||+||+ |+++++++
T Consensus 89 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral 168 (257)
T PRK14246 89 RKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARAL 168 (257)
T ss_pred hcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence 112466665421 1122222 23345553 345678899999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH-HhhccccceeeCceEEEe
Q 006974 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (623)
Q Consensus 429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l-~~~~~~~~~i~~g~~~~~ 494 (623)
+.+|+++||||||+|||+.....+...+ ..+.+ ++|+|++||+.+. ..+|++.+.+.+|++...
T Consensus 169 ~~~P~llllDEPt~~LD~~~~~~l~~~l-~~~~~-~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~ 233 (257)
T PRK14246 169 ALKPKVLLMDEPTSMIDIVNSQAIEKLI-TELKN-EIAIVIVSHNPQQVARVADYVAFLYNGELVEW 233 (257)
T ss_pred HcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhc-CcEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999944 45554 5899999999884 579999999999988654
No 266
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.2e-23 Score=212.90 Aligned_cols=166 Identities=20% Similarity=0.221 Sum_probs=128.2
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------h------------------
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------S------------------ 378 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------a------------------ 378 (623)
.++++||++.|++..+ +++|++.+| ++++|+||||||||||||+| |+..+- +
T Consensus 7 ~l~~~~l~~~~~~~~il~~isl~i~~G-e~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (259)
T PRK14260 7 AIKVKDLSFYYNTSKAIEGISMDIYRN-KVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININR 85 (259)
T ss_pred eEEEEEEEEEECCeEeecceEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHh
Confidence 5889999999987555 999999999 99999999999999999999 765420 0
Q ss_pred --hhceeecCCCCC-CccHHHH----------------------HHHHcCC----chhhhcccccccHHHH-HHHHHHHh
Q 006974 379 --KAGLYLPAKNHP-RLPWFDL----------------------ILADIGD----HQSLEQNLSTFSGHIS-RIVDILEL 428 (623)
Q Consensus 379 --~~G~~vp~~~~~-~l~~~d~----------------------i~~~ig~----~~~~~~~~stfS~g~~-rl~~~~~l 428 (623)
....|+|+.... ..+..++ ++..+|+ .+..++.+.+||+|++ |+++++++
T Consensus 86 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 165 (259)
T PRK14260 86 LRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARAL 165 (259)
T ss_pred hhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHH
Confidence 112356665311 1122222 2333444 2346678899999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceee-----CceEEEe
Q 006974 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE-----NAATEFS 494 (623)
Q Consensus 429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~-----~g~~~~~ 494 (623)
+.+|+++||||||+|+|+.....+...+. .+.+ +.|+|++||+.+ +..+|++++.+. +|++...
T Consensus 166 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~~~-~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 166 AIKPKVLLMDEPCSALDPIATMKVEELIH-SLRS-ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhc-CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 99999999999999999999999999554 4555 589999999987 668999998887 4877654
No 267
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.90 E-value=3.1e-24 Score=207.61 Aligned_cols=143 Identities=25% Similarity=0.243 Sum_probs=110.3
Q ss_pred ceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhh
Q 006974 330 GSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSL 408 (623)
Q Consensus 330 ~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~ 408 (623)
.||++.|++..+ ..++++.+| ++++|+||||||||||+|++ .|...|.+|...+... .++. .
T Consensus 4 ~~l~~~~~~~~~l~~~~~i~~G-e~~~l~G~nGsGKSTLl~~l--------~Gl~~p~~G~i~~~g~-----~i~~---~ 66 (177)
T cd03222 4 PDCVKRYGVFFLLVELGVVKEG-EVIGIVGPNGTGKTTAVKIL--------AGQLIPNGDNDEWDGI-----TPVY---K 66 (177)
T ss_pred CCeEEEECCEEEEccCcEECCC-CEEEEECCCCChHHHHHHHH--------HcCCCCCCcEEEECCE-----EEEE---E
Confidence 478999988766 445899999 99999999999999999999 7766666653322110 0110 0
Q ss_pred hcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchh-HHhhccccce
Q 006974 409 EQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTR 485 (623)
Q Consensus 409 ~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~-l~~~~~~~~~ 485 (623)
.+.. .||+||+ |++++++++.+|+++||||||+|+|+.....+...+.+ +.++ +.++|++||+.+ +..+|+++..
T Consensus 67 ~q~~-~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~-~~~~~~~tiiivsH~~~~~~~~~d~i~~ 144 (177)
T cd03222 67 PQYI-DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRR-LSEEGKKTALVVEHDLAVLDYLSDRIHV 144 (177)
T ss_pred cccC-CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH-HHHcCCCEEEEEECCHHHHHHhCCEEEE
Confidence 0111 1999999 89999999999999999999999999999999995554 4444 489999999988 5568998888
Q ss_pred eeCceE
Q 006974 486 FENAAT 491 (623)
Q Consensus 486 i~~g~~ 491 (623)
+.++..
T Consensus 145 l~~~~~ 150 (177)
T cd03222 145 FEGEPG 150 (177)
T ss_pred EcCCCc
Confidence 776543
No 268
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.6e-23 Score=213.17 Aligned_cols=167 Identities=17% Similarity=0.199 Sum_probs=129.8
Q ss_pred CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------------
Q 006974 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------ 377 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------------ 377 (623)
+.++++|++++|+++.+ ++||++.+| ++++|+|||||||||||+++ |+..+.
T Consensus 15 ~~l~~~~l~~~~~~~~vl~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~ 93 (265)
T PRK14252 15 QKSEVNKLNFYYGGYQALKNINMMVHEK-QVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVD 93 (265)
T ss_pred ceEEEEEEEEEECCeeeeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccC
Confidence 46899999999987655 999999999 99999999999999999999 765320
Q ss_pred ----hhhceeecCCCCC-CccHHH----------------------HHHHHcCC----chhhhcccccccHHHH-HHHHH
Q 006974 378 ----SKAGLYLPAKNHP-RLPWFD----------------------LILADIGD----HQSLEQNLSTFSGHIS-RIVDI 425 (623)
Q Consensus 378 ----a~~G~~vp~~~~~-~l~~~d----------------------~i~~~ig~----~~~~~~~~stfS~g~~-rl~~~ 425 (623)
.+...|+|+.... ..++.+ .++..++. .+..++...+||+|++ |+.++
T Consensus 94 ~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 173 (265)
T PRK14252 94 PIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIA 173 (265)
T ss_pred HHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHH
Confidence 0112466765310 011111 12233343 2345677899999999 89999
Q ss_pred HHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 426 ~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
++++.+|+++||||||+|+|+.....+... +..+.+ +.|+|++||+.+ +..+|+++..+.+|++...
T Consensus 174 ral~~~p~llllDEPt~gLD~~~~~~l~~~-l~~l~~-~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~ 241 (265)
T PRK14252 174 RALATDPEILLFDEPTSALDPIATASIEEL-ISDLKN-KVTILIVTHNMQQAARVSDYTAYMYMGELIEF 241 (265)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHh-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999994 455655 589999999988 5579999999999988654
No 269
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.90 E-value=2e-23 Score=214.21 Aligned_cols=167 Identities=13% Similarity=0.055 Sum_probs=127.0
Q ss_pred CCcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hh
Q 006974 324 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SK 379 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~ 379 (623)
.+.++++|++++|++ ..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPG-QKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCC-CEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 367999999999975 334 999999999 99999999999999999999 765421 11
Q ss_pred hceeecCCCCCCcc--H--------------HHHHHHHcCCch-----------hhhcccccccHHHH-HHHHHHHhcCC
Q 006974 380 AGLYLPAKNHPRLP--W--------------FDLILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSR 431 (623)
Q Consensus 380 ~G~~vp~~~~~~l~--~--------------~d~i~~~ig~~~-----------~~~~~~stfS~g~~-rl~~~~~l~~~ 431 (623)
...|+|+... .++ + +..++...+... .+......||+||+ |++++++++.+
T Consensus 96 ~i~~v~q~~~-l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 174 (257)
T cd03288 96 RLSIILQDPI-LFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRK 174 (257)
T ss_pred hEEEECCCCc-ccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcC
Confidence 2346676531 111 1 112222233332 23344579999999 79999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
|+++||||||+|+|+.....+...+ ..+. ++.|+|++||+.+....|++++.+.+|++..+
T Consensus 175 p~llllDEPt~gLD~~~~~~l~~~l-~~~~-~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~ 235 (257)
T cd03288 175 SSILIMDEATASIDMATENILQKVV-MTAF-ADRTVVTIAHRVSTILDADLVLVLSRGILVEC 235 (257)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHH-HHhc-CCCEEEEEecChHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999888844 4454 47899999999986556999999999998754
No 270
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.9e-23 Score=212.90 Aligned_cols=166 Identities=17% Similarity=0.227 Sum_probs=126.7
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-----h--------------------
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M-------------------- 377 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-----~-------------------- 377 (623)
+++++||+++|++..+ ++||++.+| ++++|+||||+|||||||++ |+..+ .
T Consensus 10 ~l~i~~v~~~~~~~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 88 (264)
T PRK14243 10 VLRTENLNVYYGSFLAVKNVWLDIPKN-QITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE 88 (264)
T ss_pred EEEEeeeEEEECCEEEeecceEEEcCC-CEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHH
Confidence 5889999999987655 999999999 99999999999999999999 66431 0
Q ss_pred -hhhceeecCCCCC-CccHHHHH--------------------HHHcCCc----hhhhcccccccHHHH-HHHHHHHhcC
Q 006974 378 -SKAGLYLPAKNHP-RLPWFDLI--------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILELVS 430 (623)
Q Consensus 378 -a~~G~~vp~~~~~-~l~~~d~i--------------------~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~l~~ 430 (623)
.+...|+|+.... ..++.+++ +..++.. +..++.+.+||+||+ |++++++++.
T Consensus 89 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~ 168 (264)
T PRK14243 89 VRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAV 168 (264)
T ss_pred HhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 0112456665310 01222222 2333332 235667889999999 8999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceee---------CceEEEe
Q 006974 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE---------NAATEFS 494 (623)
Q Consensus 431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~---------~g~~~~~ 494 (623)
+|+++||||||+|||+.....+... +..+.+ +.|+|++||+.+ +..+|++++.+. +|+++..
T Consensus 169 ~p~lllLDEPt~~LD~~~~~~l~~~-L~~~~~-~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 169 QPEVILMDEPCSALDPISTLRIEEL-MHELKE-QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHH-HHHHhc-CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999984 455555 479999999987 678999999887 5766543
No 271
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.90 E-value=2.2e-23 Score=206.73 Aligned_cols=162 Identities=15% Similarity=0.114 Sum_probs=125.3
Q ss_pred CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh
Q 006974 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 380 (623)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~ 380 (623)
+.++++|+++.|++ ..+ +++|++.+| ++++|+||||+|||||||++ |+..+- .+.
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G-~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAG-EKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 46889999999975 234 999999999 99999999999999999999 665321 122
Q ss_pred ceeecCCCCC-CccHHHHH-----------HHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHH
Q 006974 381 GLYLPAKNHP-RLPWFDLI-----------LADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (623)
Q Consensus 381 G~~vp~~~~~-~l~~~d~i-----------~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~ 447 (623)
-.|+|+.... ..++.+++ ...++ ++..+.+||+|++ |++++++++.+|+++||||||+|+|+.
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~----~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 159 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR----VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYA 159 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh----ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHH
Confidence 3467776411 11222322 11111 4567899999999 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEE
Q 006974 448 EGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (623)
Q Consensus 448 ~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~ 493 (623)
....+...+. .+.+ +.|+|++||+.+....|++++.+.+|++..
T Consensus 160 ~~~~l~~~l~-~~~~-~~tiii~th~~~~~~~~d~v~~l~~g~i~~ 203 (207)
T cd03369 160 TDALIQKTIR-EEFT-NSTILTIAHRLRTIIDYDKILVMDAGEVKE 203 (207)
T ss_pred HHHHHHHHHH-HhcC-CCEEEEEeCCHHHHhhCCEEEEEECCEEEe
Confidence 9999998544 4443 789999999988555599999999998754
No 272
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=5.2e-24 Score=202.69 Aligned_cols=167 Identities=22% Similarity=0.271 Sum_probs=132.9
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHh-hhhh-------------------hhhhcee
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLG-LASL-------------------MSKAGLY 383 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~ig-l~~~-------------------~a~~G~~ 383 (623)
+++++||+|+|+++.| ++|+.+++| .++.|+||||+||||||.+++ |+.. +|+.-+.
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g-~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKG-GITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCC-ceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 3678999999999887 999999999 899999999999999999993 3321 1211111
Q ss_pred ecCCC-------------CCCcc------------HHHHHHHHcCCchhhhcccccccHHHHHHHHHH-HhcCCCcEEEE
Q 006974 384 LPAKN-------------HPRLP------------WFDLILADIGDHQSLEQNLSTFSGHISRIVDIL-ELVSRESLVLI 437 (623)
Q Consensus 384 vp~~~-------------~~~l~------------~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~-~l~~~~~LlLL 437 (623)
+-|+. +-++| .+++.+..+++.+.-++.+.+||||+++.++++ .++++.+.++|
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlL 159 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLL 159 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEe
Confidence 11110 01122 256677888899999999999999999666655 48999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEcCchhHH-hhccccceeeCceEEEe
Q 006974 438 DEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (623)
Q Consensus 438 DEp~~glD~~~~~~l~~all~~l~-~~~~~vii~TH~~~l~-~~~~~~~~i~~g~~~~~ 494 (623)
|||.++||......++. +++.+. +.|.|+++|-||.+++ .++|+++.++||.++..
T Consensus 160 DEPLNNLDmkHsv~iMk-~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~ 217 (252)
T COG4604 160 DEPLNNLDMKHSVQIMK-ILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQ 217 (252)
T ss_pred cCcccccchHHHHHHHH-HHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEec
Confidence 99999999999999999 555555 5689999999999976 58999999999998754
No 273
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.90 E-value=8e-24 Score=204.58 Aligned_cols=143 Identities=26% Similarity=0.291 Sum_probs=112.2
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhcee-----ecCCCCCCccHH--HHHHHHcCCch-hhhcccc
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLY-----LPAKNHPRLPWF--DLILADIGDHQ-SLEQNLS 413 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~-----vp~~~~~~l~~~--d~i~~~ig~~~-~~~~~~s 413 (623)
++||++.+| ++++|+||||||||||||++.. ..|.. .+......+.++ .+.+..+++.. .+++.++
T Consensus 13 ~isl~i~~G-~~~~l~G~nG~GKSTLl~~il~-----~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~ 86 (176)
T cd03238 13 NLDVSIPLN-VLVVVTGVSGSGKSTLVNEGLY-----ASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLS 86 (176)
T ss_pred ceEEEEcCC-CEEEEECCCCCCHHHHHHHHhh-----cCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcC
Confidence 899999999 9999999999999999999810 11211 010000011111 34678888875 4788999
Q ss_pred cccHHHH-HHHHHHHhcCC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCce
Q 006974 414 TFSGHIS-RIVDILELVSR--ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAA 490 (623)
Q Consensus 414 tfS~g~~-rl~~~~~l~~~--~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~ 490 (623)
+||+|++ |++++++++.+ |+++||||||+|+|+.....+...+ ..+.+.+.++|++||+.+....|+++..+.+|.
T Consensus 87 ~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l-~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~ 165 (176)
T cd03238 87 TLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVI-KGLIDLGNTVILIEHNLDVLSSADWIIDFGPGS 165 (176)
T ss_pred cCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCC
Confidence 9999999 89999999999 9999999999999999999999954 445667899999999998767899988887764
Q ss_pred E
Q 006974 491 T 491 (623)
Q Consensus 491 ~ 491 (623)
.
T Consensus 166 ~ 166 (176)
T cd03238 166 G 166 (176)
T ss_pred C
Confidence 3
No 274
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2e-23 Score=234.30 Aligned_cols=166 Identities=16% Similarity=0.197 Sum_probs=133.4
Q ss_pred cEEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhcee
Q 006974 326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLY 383 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G~~ 383 (623)
.++++|+++.|+. .+ ++||++.+| ++++|+||||||||||||+| |+..+. .+...|
T Consensus 265 ~l~~~~l~~~~~~-~l~~isl~i~~G-e~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~ 342 (510)
T PRK09700 265 VFEVRNVTSRDRK-KVRDISFSVCRG-EILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAY 342 (510)
T ss_pred EEEEeCccccCCC-cccceeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEE
Confidence 5788999988753 34 999999999 99999999999999999999 765321 011247
Q ss_pred ecCCC-----CCCccH------------------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHH
Q 006974 384 LPAKN-----HPRLPW------------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDIL 426 (623)
Q Consensus 384 vp~~~-----~~~l~~------------------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~ 426 (623)
+|+.. ...+++ ++.++..+|+. +..++.+++|||||+ |+.+|+
T Consensus 343 v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAr 422 (510)
T PRK09700 343 ITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISK 422 (510)
T ss_pred ccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHH
Confidence 77751 000111 23456677886 678899999999999 899999
Q ss_pred HhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 427 ~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+++.+|+++||||||+|||+.....+.. ++..+.+.|.|+|++|||.+ +..+|++++.+.+|++...
T Consensus 423 al~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 490 (510)
T PRK09700 423 WLCCCPEVIIFDEPTRGIDVGAKAEIYK-VMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQI 490 (510)
T ss_pred HHhcCCCEEEECCCCCCcCHHHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999 55556666889999999987 6689999999999987643
No 275
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4.5e-23 Score=210.49 Aligned_cols=166 Identities=20% Similarity=0.240 Sum_probs=128.1
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh--h---h--------------------
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS--L---M-------------------- 377 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~--~---~-------------------- 377 (623)
+++++||++.|++..+ +++|++.+| ++++|+||||+||||||++| |+.. . .
T Consensus 3 ~l~~~~v~~~~~~~~~l~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 3 RIEVENLNTYFDDAHILKNVNLDIPKN-SVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEEeEEEEeCCeEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 4678999999987555 999999999 99999999999999999999 6642 1 0
Q ss_pred -hhhceeecCCCCC-CccHHHH----------------------HHHHcCCc----hhhhcccccccHHHH-HHHHHHHh
Q 006974 378 -SKAGLYLPAKNHP-RLPWFDL----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (623)
Q Consensus 378 -a~~G~~vp~~~~~-~l~~~d~----------------------i~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~l 428 (623)
.+...|+|+.... ..+..++ ++..+|+. ...++.+..||+|++ |+++++++
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 161 (250)
T PRK14266 82 LRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTI 161 (250)
T ss_pred HhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 1123567766421 0111221 23333432 234677899999999 79999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+.+|+++||||||+|+|+.....+...+. .+.+ +.|+|++||+.+ +..+++++..+.+|++..+
T Consensus 162 ~~~p~llllDEP~~gLD~~~~~~l~~~l~-~~~~-~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~ 226 (250)
T PRK14266 162 AVSPEVILMDEPCSALDPISTTKIEDLIH-KLKE-DYTIVIVTHNMQQATRVSKYTSFFLNGEIIES 226 (250)
T ss_pred HcCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhc-CCeEEEEECCHHHHHhhcCEEEEEECCeEEEe
Confidence 99999999999999999999999998544 5554 789999999987 6678888888999998765
No 276
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.4e-23 Score=238.63 Aligned_cols=168 Identities=15% Similarity=0.098 Sum_probs=134.8
Q ss_pred CcEEEceeeeecCC-----------ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------
Q 006974 325 SEMTVGSLSKGISD-----------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------- 377 (623)
Q Consensus 325 ~~l~~~~l~~~y~~-----------~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------- 377 (623)
.+++++||++.|+. ..+ ++||++.+| ++++|+||||||||||+|+| |++.+.
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~G-e~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPG-ETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCC-CEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 46899999999961 233 999999999 99999999999999999999 776421
Q ss_pred ---------hhhceeecCCCC----CCccH----------------------HHHHHHHcCCc-hhhhcccccccHHHH-
Q 006974 378 ---------SKAGLYLPAKNH----PRLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS- 420 (623)
Q Consensus 378 ---------a~~G~~vp~~~~----~~l~~----------------------~d~i~~~ig~~-~~~~~~~stfS~g~~- 420 (623)
.+...|+|++.. ..+.+ +..++..+|+. +..++.+++|||||+
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQ 470 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQ 470 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHH
Confidence 012357888641 11111 12346667885 567899999999999
Q ss_pred HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 421 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 421 rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|+++|++++.+|+||||||||+|||+.....+... +..+.+ .|.++|++|||++ +..+||++..+.+|++...
T Consensus 471 Rv~iAraL~~~p~llllDEPts~LD~~~~~~i~~l-l~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~ 545 (623)
T PRK10261 471 RICIARALALNPKVIIADEAVSALDVSIRGQIINL-LLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEI 545 (623)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 89999999999999999999999999999999994 445554 4889999999988 5679999999999998754
No 277
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.90 E-value=3.4e-23 Score=233.51 Aligned_cols=167 Identities=17% Similarity=0.189 Sum_probs=132.4
Q ss_pred cEEEceeeeecC-----------Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh------hh--------
Q 006974 326 EMTVGSLSKGIS-----------DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS------LM-------- 377 (623)
Q Consensus 326 ~l~~~~l~~~y~-----------~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~------~~-------- 377 (623)
+++++||++.|+ +..+ ++||++.+| ++++|+||||||||||+|++ |++. +.
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPG-ETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCC-CEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccc
Confidence 477899999995 2334 999999999 99999999999999999999 7652 10
Q ss_pred -------hhhceeecCCCC----CCccH-----------------------HHHHHHHcCCc-hhhhcccccccHHHH-H
Q 006974 378 -------SKAGLYLPAKNH----PRLPW-----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-R 421 (623)
Q Consensus 378 -------a~~G~~vp~~~~----~~l~~-----------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-r 421 (623)
.+...|+|+... ..+++ +..++..+|+. +..++.+++|||||+ |
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qr 433 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQR 433 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHH
Confidence 111357777631 11111 12345667776 467899999999999 8
Q ss_pred HHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 422 l~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
++++++++.+|+++||||||+|||+.....+...+ ..+++ .+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 434 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 507 (529)
T PRK15134 434 IAIARALILKPSLIILDEPTSSLDKTVQAQILALL-KSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQ 507 (529)
T ss_pred HHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHH-HHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEE
Confidence 99999999999999999999999999999999954 44554 4889999999987 5679999999999988654
No 278
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4.1e-23 Score=217.04 Aligned_cols=169 Identities=18% Similarity=0.207 Sum_probs=129.5
Q ss_pred CCCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-----------------------
Q 006974 323 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------------- 376 (623)
Q Consensus 323 g~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~----------------------- 376 (623)
++.++.++||++.|++..+ +++|++.+| ++++|+|||||||||||++| |+..+
T Consensus 42 ~~~~l~i~nl~~~~~~~~iL~~is~~i~~G-e~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 42 GDAKLSVEDLDVYYGDDHALKGVSMDIPEK-SVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CCceEEEEEEEEEeCCeeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 3457999999999987655 999999999 99999999999999999999 77531
Q ss_pred ---hhhhceeecCCCCC-CccHHHHH----------------------------------HHHcCCc----hhhhccccc
Q 006974 377 ---MSKAGLYLPAKNHP-RLPWFDLI----------------------------------LADIGDH----QSLEQNLST 414 (623)
Q Consensus 377 ---~a~~G~~vp~~~~~-~l~~~d~i----------------------------------~~~ig~~----~~~~~~~st 414 (623)
..+...|+|+.... ..++.+++ +..+++. ...++.+..
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 200 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALG 200 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCcccc
Confidence 00123477776420 01222222 2333332 344677899
Q ss_pred ccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhcccc-ceeeCceE
Q 006974 415 FSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKD-TRFENAAT 491 (623)
Q Consensus 415 fS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~-~~i~~g~~ 491 (623)
||+||+ |++++++++.+|+++||||||+|||+.....+... +..+.+ +.++|++||+.+ +..+|+++ +.+.+|++
T Consensus 201 LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~-L~~~~~-~~tiiivtH~~~~i~~~~d~i~~~l~~G~i 278 (305)
T PRK14264 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDL-IEELAE-EYTVVVVTHNMQQAARISDQTAVFLTGGEL 278 (305)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHhc-CCEEEEEEcCHHHHHHhcCEEEEEecCCEE
Confidence 999999 89999999999999999999999999999999984 445565 479999999987 46789986 45689988
Q ss_pred EEe
Q 006974 492 EFS 494 (623)
Q Consensus 492 ~~~ 494 (623)
..+
T Consensus 279 ~~~ 281 (305)
T PRK14264 279 VEY 281 (305)
T ss_pred EEe
Confidence 755
No 279
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.90 E-value=3e-23 Score=209.30 Aligned_cols=151 Identities=16% Similarity=0.194 Sum_probs=119.6
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh----hh-----------------hhceeecCCCC----CCccH-
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----MS-----------------KAGLYLPAKNH----PRLPW- 394 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~----~a-----------------~~G~~vp~~~~----~~l~~- 394 (623)
++||++.+| ++++|+||||||||||+|++ |++.+ .. +...|+|+... ..++.
T Consensus 4 ~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~ 82 (230)
T TIGR02770 4 DLNLSLKRG-EVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMG 82 (230)
T ss_pred ceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHH
Confidence 678999999 99999999999999999999 77654 11 12346676641 11221
Q ss_pred --------------------HHHHHHHcCCc---hhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHH
Q 006974 395 --------------------FDLILADIGDH---QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGV 450 (623)
Q Consensus 395 --------------------~d~i~~~ig~~---~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~ 450 (623)
+..++..+|+. +..++.+++||+|++ |++++++++.+|+++||||||+|+|+....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~ 162 (230)
T TIGR02770 83 NHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQA 162 (230)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHH
Confidence 12334555665 457889999999999 799999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 451 ALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 451 ~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
.+...+. .+.+ .+.|+|++||+.+ +..+|+++..+.+|++...
T Consensus 163 ~l~~~l~-~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 207 (230)
T TIGR02770 163 RVLKLLR-ELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVER 207 (230)
T ss_pred HHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999555 4554 4789999999987 5579999999999998754
No 280
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.90 E-value=1.5e-23 Score=241.06 Aligned_cols=162 Identities=20% Similarity=0.208 Sum_probs=123.5
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhh----hc----eeecCCCCC-C-c
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK----AG----LYLPAKNHP-R-L 392 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~----~G----~~vp~~~~~-~-l 392 (623)
+++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |++.+... .| .++|+.... . .
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~G-e~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~ 81 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDN-ERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEG 81 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCC
Confidence 4789999999988666 999999999 99999999999999999999 66544210 01 133332100 0 0
Q ss_pred cHH-------------------------------------------------------HHHHHHcCCchhhhcccccccH
Q 006974 393 PWF-------------------------------------------------------DLILADIGDHQSLEQNLSTFSG 417 (623)
Q Consensus 393 ~~~-------------------------------------------------------d~i~~~ig~~~~~~~~~stfS~ 417 (623)
.++ ..++..+|+. .++.+++|||
T Consensus 82 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSg 159 (635)
T PRK11147 82 TVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSG 159 (635)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCH
Confidence 001 1122333432 2678999999
Q ss_pred HHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 418 HIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 418 g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
||+ |++++++++.+|+++||||||+|||+.....|...+.++ +++||+||||.+ +..+|++++.+.+|++...
T Consensus 160 GekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~ 234 (635)
T PRK11147 160 GWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QGSIIFISHDRSFIRNMATRIVDLDRGKLVSY 234 (635)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CCEEEEEeCCHHHHHHhcCeEEEEECCEEEEe
Confidence 999 899999999999999999999999999999888743332 469999999988 5679999999999988654
No 281
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=3.9e-23 Score=204.54 Aligned_cols=163 Identities=18% Similarity=0.199 Sum_probs=122.7
Q ss_pred EEEceeeeecC----Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh---hhh------------------
Q 006974 327 MTVGSLSKGIS----DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS---LMS------------------ 378 (623)
Q Consensus 327 l~~~~l~~~y~----~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~---~~a------------------ 378 (623)
+.++||+|.|+ +..+ ++||++.+| ++++|+||||||||||++++ |+.. +..
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPG-EMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEECCC-cEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 57899999995 3344 999999999 99999999999999999999 7765 210
Q ss_pred hhceeecCCCC--CCccHHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHH
Q 006974 379 KAGLYLPAKNH--PRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATS 455 (623)
Q Consensus 379 ~~G~~vp~~~~--~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~a 455 (623)
+...|+|+... ..+++.+++...... ..++.+..||+||+ |++++++++.+|+++||||||+|+|+.....+...
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~--~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~ 160 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRC--KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKC 160 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhh--ccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHH
Confidence 11235565431 123445554321111 15678899999999 79999999999999999999999999999999995
Q ss_pred HHHHHhcC-CcEEEEE-cCch-hHHhhccccceeeCceEEE
Q 006974 456 ILQYLRDR-VGLAVVT-THYA-DLSCLKDKDTRFENAATEF 493 (623)
Q Consensus 456 ll~~l~~~-~~~vii~-TH~~-~l~~~~~~~~~i~~g~~~~ 493 (623)
+ ..+.+. +.++|++ +|+. ++..+|+++..+.+|++..
T Consensus 161 l-~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~ 200 (202)
T cd03233 161 I-RTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIY 200 (202)
T ss_pred H-HHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEe
Confidence 4 455543 5665555 5554 4778999999999998764
No 282
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.7e-23 Score=205.00 Aligned_cols=167 Identities=18% Similarity=0.219 Sum_probs=126.1
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------h--------------hhhc
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------M--------------SKAG 381 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------~--------------a~~G 381 (623)
.++++||+..|+++.+ ++|.++++| +-++|+|||||||||||+++ |-..+ + .++|
T Consensus 31 li~l~~v~v~r~gk~iL~~isW~V~~g-e~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG 109 (257)
T COG1119 31 LIELKNVSVRRNGKKILGDLSWQVNPG-EHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIG 109 (257)
T ss_pred eEEecceEEEECCEeeccccceeecCC-CcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhC
Confidence 4889999999999888 999999999 99999999999999999999 32211 0 1112
Q ss_pred e--------eecCCC---------CCCccH------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCC
Q 006974 382 L--------YLPAKN---------HPRLPW------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (623)
Q Consensus 382 ~--------~vp~~~---------~~~l~~------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~ 431 (623)
. |.+... +..++. ...++..+|.....+++..+||-|++ ++-++++++.+
T Consensus 110 ~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~ 189 (257)
T COG1119 110 LVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKD 189 (257)
T ss_pred ccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcC
Confidence 1 000000 011111 22457788888889999999999999 57777889999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC--CcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDR--VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~--~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|.|||||||++|+|...+..+.. .+..+... +.++|+|||+.+ +..-.++...+.+|++...
T Consensus 190 P~LLiLDEP~~GLDl~~re~ll~-~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~ 254 (257)
T COG1119 190 PELLILDEPAQGLDLIAREQLLN-RLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQ 254 (257)
T ss_pred CCEEEecCccccCChHHHHHHHH-HHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeec
Confidence 99999999999999999999988 44455543 568999999977 4455567777888876543
No 283
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.7e-23 Score=238.23 Aligned_cols=167 Identities=14% Similarity=0.176 Sum_probs=133.5
Q ss_pred CcEEEceeeeecCC----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------h------------
Q 006974 325 SEMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S------------ 378 (623)
Q Consensus 325 ~~l~~~~l~~~y~~----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------a------------ 378 (623)
.+++++||++.|++ ..+ ++||++.+| ++++|+||||||||||+|+| |++.+. .
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~G-e~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRG-ETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCC-CEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence 36899999999963 233 999999999 99999999999999999999 665320 0
Q ss_pred --------------hhceeecCCC----CCCccHH----------------------HHHHHHcCCc---hhhhcccccc
Q 006974 379 --------------KAGLYLPAKN----HPRLPWF----------------------DLILADIGDH---QSLEQNLSTF 415 (623)
Q Consensus 379 --------------~~G~~vp~~~----~~~l~~~----------------------d~i~~~ig~~---~~~~~~~stf 415 (623)
+...|+|+.. ...+++. ..++..+|+. ..+++.+++|
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~L 169 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQL 169 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccC
Confidence 0124677753 1112222 2345667774 3578899999
Q ss_pred cHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEE
Q 006974 416 SGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (623)
Q Consensus 416 S~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~ 492 (623)
||||+ |+.+|++++.+|++|||||||+|||+.....+.+ ++..+.+ .|.|+|++||+.+ +..+||+++.+.+|++.
T Consensus 170 SgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~-ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~ 248 (623)
T PRK10261 170 SGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ-LIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV 248 (623)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec
Confidence 99999 8999999999999999999999999999999999 6666764 4889999999987 56899999999999876
Q ss_pred E
Q 006974 493 F 493 (623)
Q Consensus 493 ~ 493 (623)
.
T Consensus 249 ~ 249 (623)
T PRK10261 249 E 249 (623)
T ss_pred c
Confidence 4
No 284
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.90 E-value=2e-23 Score=224.33 Aligned_cols=164 Identities=17% Similarity=0.162 Sum_probs=131.1
Q ss_pred ceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------h--------------------h
Q 006974 330 GSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S--------------------K 379 (623)
Q Consensus 330 ~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------a--------------------~ 379 (623)
.++.+.||...+ ++||++.+| ++++|+||||||||||||+| |++.+- . +
T Consensus 28 ~~~~~~~g~~~~l~~vsf~i~~G-ei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~ 106 (382)
T TIGR03415 28 EEILDETGLVVGVANASLDIEEG-EICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTH 106 (382)
T ss_pred HHHHHhhCCEEEEEeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcC
Confidence 346677776554 999999999 99999999999999999999 665421 0 1
Q ss_pred hceeecCCCC--CCccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974 380 AGLYLPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (623)
Q Consensus 380 ~G~~vp~~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll 435 (623)
...|+|+... ..+++. ..++..+|+.+..++.+..|||||+ |+.++++++.+|+++
T Consensus 107 ~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 107 RVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred CEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 2346777641 111222 2346677888888999999999999 899999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 436 LLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
||||||+||||..+..+...+.+...+.+.|+|++||+++ +..+|+++..+.+|++...
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~ 246 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQH 246 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999666543445889999999988 4689999999999998754
No 285
>PRK13409 putative ATPase RIL; Provisional
Probab=99.90 E-value=2.1e-23 Score=236.73 Aligned_cols=162 Identities=25% Similarity=0.258 Sum_probs=131.2
Q ss_pred cEEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------hhceeecCCCCC--CccH-
Q 006974 326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------KAGLYLPAKNHP--RLPW- 394 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------~~G~~vp~~~~~--~l~~- 394 (623)
.++++|+++.|++..+ ++++++.+| ++++|+||||||||||||++ |++.+.. ....|+|+.... .+++
T Consensus 340 ~l~~~~ls~~~~~~~l~~~s~~i~~G-eiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~ 418 (590)
T PRK13409 340 LVEYPDLTKKLGDFSLEVEGGEIYEG-EVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVE 418 (590)
T ss_pred EEEEcceEEEECCEEEEecceEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHH
Confidence 5789999999987545 889999999 99999999999999999999 7765431 112467776321 1111
Q ss_pred ---------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006974 395 ---------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQ 458 (623)
Q Consensus 395 ---------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~ 458 (623)
.+.++..+|+.+..++.+++|||||+ |+++|++++.+|+++||||||+|||+..+..+...+.+
T Consensus 419 e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~ 498 (590)
T PRK13409 419 DLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRR 498 (590)
T ss_pred HHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 23456778888889999999999999 89999999999999999999999999999999995544
Q ss_pred HHhcCCcEEEEEcCchh-HHhhccccceeeC
Q 006974 459 YLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (623)
Q Consensus 459 ~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~ 488 (623)
...+.+.|+|++|||.+ +..+||+++.+.+
T Consensus 499 l~~~~g~tviivsHD~~~~~~~aDrvivl~~ 529 (590)
T PRK13409 499 IAEEREATALVVDHDIYMIDYISDRLMVFEG 529 (590)
T ss_pred HHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 33445889999999988 5578999888865
No 286
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.90 E-value=2.9e-23 Score=207.61 Aligned_cols=162 Identities=17% Similarity=0.168 Sum_probs=122.1
Q ss_pred EEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-----------------------hh
Q 006974 328 TVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-----------------------KA 380 (623)
Q Consensus 328 ~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-----------------------~~ 380 (623)
.+.|+.++|++ ..+ +++|++.+| ++++|+|||||||||||++| |++.+.. +.
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTG-QLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 46788899964 334 999999999 99999999999999999999 6653210 11
Q ss_pred ceeecCCCCC-CccHHH--------------HHHHHcCCchh-----------hhcccccccHHHH-HHHHHHHhcCCCc
Q 006974 381 GLYLPAKNHP-RLPWFD--------------LILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRES 433 (623)
Q Consensus 381 G~~vp~~~~~-~l~~~d--------------~i~~~ig~~~~-----------~~~~~stfS~g~~-rl~~~~~l~~~~~ 433 (623)
-.|+|+.... ..+..+ .++..+++... ++..+.+||+||+ |+.++++++.+|+
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 2366665410 112222 22333343322 2356789999999 8999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCcEEEEEcCchhHHhhccccceeeCce
Q 006974 434 LVLIDEIGSGTDPSEGVALATS-ILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAA 490 (623)
Q Consensus 434 LlLLDEp~~glD~~~~~~l~~a-ll~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~ 490 (623)
++||||||+|||+.....+... +++.+.+.+.|+|++||+.+....|+++..+.+|+
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 9999999999999999999884 67777777889999999988656788888777663
No 287
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.90 E-value=3.1e-23 Score=233.38 Aligned_cols=167 Identities=20% Similarity=0.239 Sum_probs=131.6
Q ss_pred cEEEceeeeecCC-----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh------h--h-----------
Q 006974 326 EMTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------M--S----------- 378 (623)
Q Consensus 326 ~l~~~~l~~~y~~-----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~------~--a----------- 378 (623)
+++++||+++|++ ..+ ++||++.+| ++++|+||||||||||||++ |++.+ + .
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~G-e~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~ 357 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEG-EIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP 357 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccch
Confidence 5788999999942 334 999999999 99999999999999999999 76532 1 0
Q ss_pred -------hhceeecCCCC--CCccHHH--------------------HHHHHcCCch-----hhhcccccccHHHH-HHH
Q 006974 379 -------KAGLYLPAKNH--PRLPWFD--------------------LILADIGDHQ-----SLEQNLSTFSGHIS-RIV 423 (623)
Q Consensus 379 -------~~G~~vp~~~~--~~l~~~d--------------------~i~~~ig~~~-----~~~~~~stfS~g~~-rl~ 423 (623)
+.-.|+|+... ..+.+++ .++..+|+.+ ..++.+++|||||+ |++
T Consensus 358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~ 437 (520)
T TIGR03269 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVA 437 (520)
T ss_pred hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHH
Confidence 11247777631 1112211 2355667653 46889999999999 899
Q ss_pred HHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 424 ~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~-~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
++++++.+|+++||||||+|||+.....+...+. .+. +.+.++|++||+.+ +..+|++++.+.+|++...
T Consensus 438 laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~-~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 509 (520)
T TIGR03269 438 LAQVLIKEPRIVILDEPTGTMDPITKVDVTHSIL-KAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKI 509 (520)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999554 454 45889999999987 5679999999999988654
No 288
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.90 E-value=1.6e-23 Score=204.94 Aligned_cols=133 Identities=23% Similarity=0.252 Sum_probs=106.5
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------hhhceeecCCCC---CCccH--
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAGLYLPAKNH---PRLPW-- 394 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------a~~G~~vp~~~~---~~l~~-- 394 (623)
++||++.+| ++++|+||||||||||||++ |+..+. .+...|+|+... ...++
T Consensus 10 ~vsl~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~ 88 (190)
T TIGR01166 10 GLNFAAERG-EVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQ 88 (190)
T ss_pred ceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHH
Confidence 899999999 99999999999999999999 665421 112347777631 11111
Q ss_pred -------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHH
Q 006974 395 -------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALAT 454 (623)
Q Consensus 395 -------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~ 454 (623)
++.++..+|+.+..++.+++||+||+ |++++++++.+|+++||||||+|+|+.....+..
T Consensus 89 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~ 168 (190)
T TIGR01166 89 DVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLA 168 (190)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 12345667887788899999999999 8999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEcCchhH
Q 006974 455 SILQYLRDRVGLAVVTTHYADL 476 (623)
Q Consensus 455 all~~l~~~~~~vii~TH~~~l 476 (623)
. +..+++++.++|++||+.++
T Consensus 169 ~-l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 169 I-LRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred H-HHHHHHcCCEEEEEeecccc
Confidence 5 45566668899999999763
No 289
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.89 E-value=4.8e-23 Score=233.49 Aligned_cols=161 Identities=17% Similarity=0.198 Sum_probs=126.9
Q ss_pred cEEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--------hhceeecCCCC--CC
Q 006974 326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNH--PR 391 (623)
Q Consensus 326 ~l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--------~~G~~vp~~~~--~~ 391 (623)
+++++||+++|+ +..+ ++||++.+| ++++|+||||||||||||+| |++.+.. ....|+|+... ..
T Consensus 6 ~l~i~~l~~~y~~~~~il~~vs~~i~~G-e~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~ 84 (556)
T PRK11819 6 IYTMNRVSKVVPPKKQILKDISLSFFPG-AKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPE 84 (556)
T ss_pred EEEEeeEEEEeCCCCeeeeCceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCC
Confidence 588999999998 6655 999999999 99999999999999999999 7765421 11247787642 12
Q ss_pred ccHHHHH---------------------------------------------------------HHHcCCchhhhccccc
Q 006974 392 LPWFDLI---------------------------------------------------------LADIGDHQSLEQNLST 414 (623)
Q Consensus 392 l~~~d~i---------------------------------------------------------~~~ig~~~~~~~~~st 414 (623)
+++.+++ +..+|+. ..++.+++
T Consensus 85 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~ 163 (556)
T PRK11819 85 KTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-PWDAKVTK 163 (556)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-cccCchhh
Confidence 2333332 1222332 24678899
Q ss_pred ccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEE
Q 006974 415 FSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (623)
Q Consensus 415 fS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~ 492 (623)
|||||+ |+.++++++.+|+++||||||+|||+.....+... +..+ ++|+|++||+.+ +..+|++++.+.+|.+.
T Consensus 164 LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~-L~~~---~~tviiisHd~~~~~~~~d~i~~l~~g~i~ 239 (556)
T PRK11819 164 LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQF-LHDY---PGTVVAVTHDRYFLDNVAGWILELDRGRGI 239 (556)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHH-HHhC---CCeEEEEeCCHHHHHhhcCeEEEEeCCEEE
Confidence 999999 89999999999999999999999999999998884 3333 469999999988 56789999999999875
No 290
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=3.6e-23 Score=196.36 Aligned_cols=144 Identities=22% Similarity=0.349 Sum_probs=110.1
Q ss_pred EceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccH-------HHHHH
Q 006974 329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW-------FDLIL 399 (623)
Q Consensus 329 ~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~-------~d~i~ 399 (623)
++|+++.|++..+ +++|++.+| ++++|+||||+|||||++++ .|.+.|..+...+.. ..+..
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g-~~~~i~G~nGsGKStll~~l--------~g~~~~~~G~i~~~~~~~~~~~~~~~~ 72 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAG-EIVALVGPNGSGKSTLLRAI--------AGLLKPTSGEILIDGKDIAKLPLEELR 72 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHH--------hCCCCCCccEEEECCEEcccCCHHHHH
Confidence 5688888976555 999999999 99999999999999999999 665555544222211 01111
Q ss_pred HHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HH
Q 006974 400 ADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LS 477 (623)
Q Consensus 400 ~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~ 477 (623)
..++. +..||+||+ |+.++++++.+|+++||||||+|+|+.....+...+.+ +.+.+.++|++||+.+ +.
T Consensus 73 ~~i~~-------~~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~-~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 73 RRIGY-------VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE-LAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred hceEE-------EeeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHH-HHHCCCEEEEEeCCHHHHH
Confidence 11111 112999999 79999999999999999999999999999999995554 4554789999999988 45
Q ss_pred hhccccceeeCc
Q 006974 478 CLKDKDTRFENA 489 (623)
Q Consensus 478 ~~~~~~~~i~~g 489 (623)
.+|++...+.+|
T Consensus 145 ~~~d~i~~l~~g 156 (157)
T cd00267 145 LAADRVIVLKDG 156 (157)
T ss_pred HhCCEEEEEeCc
Confidence 667988888765
No 291
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.89 E-value=5e-23 Score=223.85 Aligned_cols=159 Identities=19% Similarity=0.244 Sum_probs=133.5
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCC--------------
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH-------------- 389 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~-------------- 389 (623)
.++++|++|+||+..+ ++||++.+| ++++|+|.||+|||||+|++ +|.|.|.+|.
T Consensus 8 ll~~~~i~K~FggV~AL~~v~l~v~~G-EV~aL~GeNGAGKSTLmKiL--------sGv~~p~~G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 8 LLELRGISKSFGGVKALDGVSLTVRPG-EVHALLGENGAGKSTLMKIL--------SGVYPPDSGEILIDGKPVAFSSPR 78 (500)
T ss_pred eeeeecceEEcCCceeeccceeEEeCc-eEEEEecCCCCCHHHHHHHH--------hCcccCCCceEEECCEEccCCCHH
Confidence 4778999999998666 999999999 99999999999999999999 4444444431
Q ss_pred -----------------CCccHHH-------------------------HHHHHcCCchhhhcccccccHHHHH-HHHHH
Q 006974 390 -----------------PRLPWFD-------------------------LILADIGDHQSLEQNLSTFSGHISR-IVDIL 426 (623)
Q Consensus 390 -----------------~~l~~~d-------------------------~i~~~ig~~~~~~~~~stfS~g~~r-l~~~~ 426 (623)
+.+++.+ .++.++|.....+..+.+||.+++| +.+|+
T Consensus 79 ~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIAr 158 (500)
T COG1129 79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIAR 158 (500)
T ss_pred HHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHH
Confidence 1122222 3466677755588999999999996 66667
Q ss_pred HhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 427 ~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
++..++++|||||||+.|+..+...|.. +++.|+++|.++|++||.++ +..+||++.++.+|....+
T Consensus 159 Al~~~arllIlDEPTaaLt~~E~~~Lf~-~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~ 226 (500)
T COG1129 159 ALSFDARVLILDEPTAALTVKETERLFD-LIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGT 226 (500)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeee
Confidence 7999999999999999999999999999 88889999999999999976 8899999999999987653
No 292
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.89 E-value=5.8e-23 Score=209.40 Aligned_cols=145 Identities=22% Similarity=0.210 Sum_probs=112.9
Q ss_pred cccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-------hhceeecCCCCC--CccH-----------------HH
Q 006974 344 DIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-------KAGLYLPAKNHP--RLPW-----------------FD 396 (623)
Q Consensus 344 ~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-------~~G~~vp~~~~~--~l~~-----------------~d 396 (623)
++++.+| ++++|+||||||||||||+| |++.+.. +...|+|+.... ..++ ..
T Consensus 19 ~~~i~~G-e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 97 (246)
T cd03237 19 GGSISES-EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKT 97 (246)
T ss_pred cCCcCCC-CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHH
Confidence 3456678 99999999999999999999 6665421 122467765321 1111 12
Q ss_pred HHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974 397 LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (623)
Q Consensus 397 ~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~ 475 (623)
.++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+|||+..+..+...+.+...+.+.++|++||+.+
T Consensus 98 ~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~ 177 (246)
T cd03237 98 EIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDII 177 (246)
T ss_pred HHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 355667777788899999999999 8999999999999999999999999999999999555443445789999999988
Q ss_pred -HHhhccccceeeCc
Q 006974 476 -LSCLKDKDTRFENA 489 (623)
Q Consensus 476 -l~~~~~~~~~i~~g 489 (623)
+..+|++++.+.+.
T Consensus 178 ~~~~~~d~i~~l~~~ 192 (246)
T cd03237 178 MIDYLADRLIVFEGE 192 (246)
T ss_pred HHHHhCCEEEEEcCC
Confidence 55689998887553
No 293
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.89 E-value=4.6e-23 Score=233.53 Aligned_cols=163 Identities=23% Similarity=0.292 Sum_probs=129.6
Q ss_pred CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------h--hceeecCCCC---C
Q 006974 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------K--AGLYLPAKNH---P 390 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------~--~G~~vp~~~~---~ 390 (623)
.+++++|+++.|++..+ ++||++.+| ++++|+||||||||||||++ |++.+.. . ...|+|+... .
T Consensus 321 ~~l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~ 399 (552)
T TIGR03719 321 KVIEAENLSKGFGDKLLIDDLSFKLPPG-GIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDP 399 (552)
T ss_pred eEEEEeeEEEEECCeeeeccceEEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCC
Confidence 46899999999987655 999999999 99999999999999999999 7765321 1 1247777531 1
Q ss_pred CccHH-------------------HHHHHHcCCch-hhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHH
Q 006974 391 RLPWF-------------------DLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 449 (623)
Q Consensus 391 ~l~~~-------------------d~i~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~ 449 (623)
.+++. ..++..+|+.. ..++.+++|||||+ |++++++++.+|+++||||||+|||+...
T Consensus 400 ~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~ 479 (552)
T TIGR03719 400 NKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETL 479 (552)
T ss_pred CCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Confidence 11222 23456677753 56889999999999 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeC-ceEE
Q 006974 450 VALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN-AATE 492 (623)
Q Consensus 450 ~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~-g~~~ 492 (623)
..+...+.+ + ++++|++|||.+ +..+|++++.+.+ |.+.
T Consensus 480 ~~l~~~l~~-~---~~~viivsHd~~~~~~~~d~i~~l~~~~~~~ 520 (552)
T TIGR03719 480 RALEEALLE-F---AGCAVVISHDRWFLDRIATHILAFEGDSHVE 520 (552)
T ss_pred HHHHHHHHH-C---CCeEEEEeCCHHHHHHhCCEEEEEECCCeEE
Confidence 999985444 3 358999999988 5678999999986 4554
No 294
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.5e-22 Score=214.61 Aligned_cols=168 Identities=18% Similarity=0.235 Sum_probs=130.9
Q ss_pred CCcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh----------------------
Q 006974 324 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------- 376 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~---------------------- 376 (623)
.+.++++|++++|.+ ..+ ++||++.+| ++++|+|||||||||||+++ |+..+
T Consensus 78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~G-e~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRN-KVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred CceEEEEeeEEEecCCCceeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 357999999999953 334 999999999 99999999999999999999 76531
Q ss_pred ----hhhhceeecCCCCC-CccHHHH----------------------HHHHcCC----chhhhcccccccHHHH-HHHH
Q 006974 377 ----MSKAGLYLPAKNHP-RLPWFDL----------------------ILADIGD----HQSLEQNLSTFSGHIS-RIVD 424 (623)
Q Consensus 377 ----~a~~G~~vp~~~~~-~l~~~d~----------------------i~~~ig~----~~~~~~~~stfS~g~~-rl~~ 424 (623)
+.+...|+|+.... ..+..++ ++..+++ ...++....+||||++ |+++
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~L 236 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCI 236 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHH
Confidence 01223577776421 1122222 2333443 2346788999999999 8999
Q ss_pred HHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 425 ~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|++++.+|+++||||||+|+|+.....+... +..+.+ ++|+|++||+++ +..+||+++.+.+|++...
T Consensus 237 ARAl~~~p~IlLLDEPts~LD~~~~~~i~~~-i~~l~~-~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~ 305 (329)
T PRK14257 237 ARAIALEPEVLLMDEPTSALDPIATAKIEEL-ILELKK-KYSIIIVTHSMAQAQRISDETVFFYQGWIEEA 305 (329)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999998884 455555 589999999998 5678999999999988654
No 295
>PLN03073 ABC transporter F family; Provisional
Probab=99.89 E-value=5.2e-23 Score=237.71 Aligned_cols=164 Identities=17% Similarity=0.175 Sum_probs=130.8
Q ss_pred CCcEEEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--------hhceeecCCCCCC
Q 006974 324 NSEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNHPR 391 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--------~~G~~vp~~~~~~ 391 (623)
...++++||++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+.. ....|+|+.....
T Consensus 506 ~~~L~~~~ls~~y~~~~~il~~vsl~i~~G-e~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~ 584 (718)
T PLN03073 506 PPIISFSDASFGYPGGPLLFKNLNFGIDLD-SRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDG 584 (718)
T ss_pred CceEEEEeeEEEeCCCCeeEeccEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEecccccc
Confidence 457999999999964 434 999999999 99999999999999999999 7765421 0123666643111
Q ss_pred cc-------------------HHHHHHHHcCCch-hhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHH
Q 006974 392 LP-------------------WFDLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGV 450 (623)
Q Consensus 392 l~-------------------~~d~i~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~ 450 (623)
+. .+..++..+|+.+ ..++++++|||||+ |++++++++.+|++|||||||+|||+....
T Consensus 585 l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~ 664 (718)
T PLN03073 585 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVE 664 (718)
T ss_pred CCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 10 1234567778764 57889999999999 899999999999999999999999999998
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEE
Q 006974 451 ALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (623)
Q Consensus 451 ~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~ 492 (623)
.+...+.++ ++|+|++||+.+ +..+|++++.+.+|.+.
T Consensus 665 ~l~~~L~~~----~gtvIivSHd~~~i~~~~drv~~l~~G~i~ 703 (718)
T PLN03073 665 ALIQGLVLF----QGGVLMVSHDEHLISGSVDELWVVSEGKVT 703 (718)
T ss_pred HHHHHHHHc----CCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 887755443 459999999988 56789999999999886
No 296
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.89 E-value=5.5e-23 Score=233.00 Aligned_cols=163 Identities=22% Similarity=0.273 Sum_probs=129.8
Q ss_pred CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------h--hceeecCCC-C--C
Q 006974 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------K--AGLYLPAKN-H--P 390 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------~--~G~~vp~~~-~--~ 390 (623)
.+++++||++.|++..+ ++||++.+| ++++|+||||||||||||++ |++.+.. . ...|+|+.. . .
T Consensus 323 ~~l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~ 401 (556)
T PRK11819 323 KVIEAENLSKSFGDRLLIDDLSFSLPPG-GIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDP 401 (556)
T ss_pred eEEEEEeEEEEECCeeeecceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCC
Confidence 36899999999987665 999999999 99999999999999999999 7764321 1 124777763 1 1
Q ss_pred CccHHH-------------------HHHHHcCCch-hhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHH
Q 006974 391 RLPWFD-------------------LILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 449 (623)
Q Consensus 391 ~l~~~d-------------------~i~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~ 449 (623)
.+++++ .++..+|+.+ ..++.+++|||||+ |++++++++.+|+++||||||+|||+...
T Consensus 402 ~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~ 481 (556)
T PRK11819 402 NKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETL 481 (556)
T ss_pred CCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence 122222 3456677753 56889999999999 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeC-ceEE
Q 006974 450 VALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN-AATE 492 (623)
Q Consensus 450 ~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~-g~~~ 492 (623)
..+...+.+ + ++++|++||+.+ +..+|++++.+.+ |.+.
T Consensus 482 ~~l~~~l~~-~---~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~ 522 (556)
T PRK11819 482 RALEEALLE-F---PGCAVVISHDRWFLDRIATHILAFEGDSQVE 522 (556)
T ss_pred HHHHHHHHh-C---CCeEEEEECCHHHHHHhCCEEEEEECCCeEE
Confidence 999985444 3 348999999988 5678999988886 5554
No 297
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.89 E-value=1.5e-22 Score=210.11 Aligned_cols=169 Identities=16% Similarity=0.082 Sum_probs=126.6
Q ss_pred CCCcEEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhh------hceeecCCCCC-Ccc
Q 006974 323 ENSEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK------AGLYLPAKNHP-RLP 393 (623)
Q Consensus 323 g~~~l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~------~G~~vp~~~~~-~l~ 393 (623)
+...++++|+++. +...+ ++||++.+| ++++|+|||||||||||++| |++.+.+. ...|+|+.... ..+
T Consensus 36 ~~~~l~i~nls~~-~~~vL~~vs~~i~~G-e~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~t 113 (282)
T cd03291 36 DDNNLFFSNLCLV-GAPVLKNINLKIEKG-EMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGT 113 (282)
T ss_pred CCCeEEEEEEEEe-cccceeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccC
Confidence 4567899999986 33233 999999999 99999999999999999999 66654321 12366765410 012
Q ss_pred HHHHH--------------HHHcCCchhh-----------hcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHH
Q 006974 394 WFDLI--------------LADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (623)
Q Consensus 394 ~~d~i--------------~~~ig~~~~~-----------~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~ 447 (623)
+.+++ +..+++.+.+ ....+.||+|++ |+.++++++.+|+++||||||+|||+.
T Consensus 114 v~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~ 193 (282)
T cd03291 114 IKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVF 193 (282)
T ss_pred HHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHH
Confidence 22222 2223333222 233579999999 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 448 EGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 448 ~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
....+...++..+.+ +.++|++||+.+....|++++.+.+|.+.+.
T Consensus 194 ~~~~l~~~ll~~~~~-~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~ 239 (282)
T cd03291 194 TEKEIFESCVCKLMA-NKTRILVTSKMEHLKKADKILILHEGSSYFY 239 (282)
T ss_pred HHHHHHHHHHHHhhC-CCEEEEEeCChHHHHhCCEEEEEECCEEEEE
Confidence 999888756665554 6899999999986678999999999998754
No 298
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.89 E-value=7.7e-23 Score=231.67 Aligned_cols=163 Identities=18% Similarity=0.199 Sum_probs=126.9
Q ss_pred cEEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--------hhceeecCCCC--CC
Q 006974 326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNH--PR 391 (623)
Q Consensus 326 ~l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--------~~G~~vp~~~~--~~ 391 (623)
+++++||+++|+ ++.+ ++||++.+| ++++|+||||||||||||+| |++.+.. ....|+|+... ..
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~G-e~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~ 82 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPG-AKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPT 82 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCC
Confidence 688999999997 5555 999999999 99999999999999999999 7764321 11247777642 12
Q ss_pred ccHHHHHH---------------------------------------------------------HHcCCchhhhccccc
Q 006974 392 LPWFDLIL---------------------------------------------------------ADIGDHQSLEQNLST 414 (623)
Q Consensus 392 l~~~d~i~---------------------------------------------------------~~ig~~~~~~~~~st 414 (623)
+++.+++. ..+|+. ..++.+++
T Consensus 83 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~ 161 (552)
T TIGR03719 83 KTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-PWDADVTK 161 (552)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-cccCchhh
Confidence 23333321 111221 14678899
Q ss_pred ccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEE
Q 006974 415 FSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (623)
Q Consensus 415 fS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~ 492 (623)
|||||+ |+.++++++.+|+++||||||+|||+.....+...+.++ ++++|++||+.+ +..+|++++.+.+|++.
T Consensus 162 LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIiisHd~~~~~~~~d~v~~l~~g~i~ 237 (552)
T TIGR03719 162 LSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVTHDRYFLDNVAGWILELDRGRGI 237 (552)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhcCeEEEEECCEEE
Confidence 999999 899999999999999999999999999999888844332 469999999988 66789999999999875
Q ss_pred Ee
Q 006974 493 FS 494 (623)
Q Consensus 493 ~~ 494 (623)
+.
T Consensus 238 ~~ 239 (552)
T TIGR03719 238 PW 239 (552)
T ss_pred Ee
Confidence 43
No 299
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.8e-22 Score=207.60 Aligned_cols=166 Identities=16% Similarity=0.162 Sum_probs=127.4
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh------h-------------------
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------M------------------- 377 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~------~------------------- 377 (623)
.+.++++++.|++..+ +++|++.+| ++++|+||||+|||||+|++ |++.+ -
T Consensus 8 ~~~~~~~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~ 86 (261)
T PRK14263 8 VMDCKLDKIFYGNFMAVRDSHVPIRKN-EITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVV 86 (261)
T ss_pred eEEEEeEEEEeCCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHh
Confidence 4678889999987655 999999999 99999999999999999999 77532 0
Q ss_pred -hhhceeecCCCCC-CccHHH--------------------HHHHHcCCch----hhhcccccccHHHH-HHHHHHHhcC
Q 006974 378 -SKAGLYLPAKNHP-RLPWFD--------------------LILADIGDHQ----SLEQNLSTFSGHIS-RIVDILELVS 430 (623)
Q Consensus 378 -a~~G~~vp~~~~~-~l~~~d--------------------~i~~~ig~~~----~~~~~~stfS~g~~-rl~~~~~l~~ 430 (623)
.+...|+|+.... .+..++ .++..+++.. ..++..+.||+||+ |++++++++.
T Consensus 87 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~ 166 (261)
T PRK14263 87 VRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIAT 166 (261)
T ss_pred hhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 0113466665421 122222 2334444432 33466789999999 8999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceee--------CceEEEe
Q 006974 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE--------NAATEFS 494 (623)
Q Consensus 431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~--------~g~~~~~ 494 (623)
+|+++||||||+|+|+.....+...+ ..+.+ +.|+|++||+.+ +..+||++..+. +|++...
T Consensus 167 ~p~llllDEPtsgLD~~~~~~l~~~l-~~~~~-~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 167 EPEVLLLDEPCSALDPIATRRVEELM-VELKK-DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHH-HHHhc-CCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 99999999999999999999999955 45554 689999999988 678999999885 6776643
No 300
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.89 E-value=8.2e-23 Score=229.35 Aligned_cols=163 Identities=18% Similarity=0.241 Sum_probs=129.8
Q ss_pred cEEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------h-------------hhcee
Q 006974 326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S-------------KAGLY 383 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------a-------------~~G~~ 383 (623)
+++++|+++. .+ ++||++.+| ++++|+||||||||||||+| |++.+. . ....|
T Consensus 268 ~l~~~~l~~~----~l~~isl~i~~G-e~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~ 342 (510)
T PRK15439 268 VLTVEDLTGE----GFRNISLEVRAG-EILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVY 342 (510)
T ss_pred eEEEeCCCCC----CccceeEEEcCC-cEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEE
Confidence 5778888842 24 899999999 99999999999999999999 775421 0 11357
Q ss_pred ecCCC-----CCCccH------------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhcCCC
Q 006974 384 LPAKN-----HPRLPW------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRE 432 (623)
Q Consensus 384 vp~~~-----~~~l~~------------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~~~~ 432 (623)
+|+.. ...+++ ++.++..+|+. +..++.+++|||||+ |+.++++++.+|
T Consensus 343 v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p 422 (510)
T PRK15439 343 LPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASP 422 (510)
T ss_pred CCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCC
Confidence 77652 011111 22445667776 678899999999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
++|||||||+|||+.....+.. ++..+.+.|.++|++|||.+ +..+||+++.+.+|++...
T Consensus 423 ~lLlLDEPt~gLD~~~~~~l~~-~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~ 484 (510)
T PRK15439 423 QLLIVDEPTRGVDVSARNDIYQ-LIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGA 484 (510)
T ss_pred CEEEECCCCcCcChhHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999 55556667889999999987 5679999999999988753
No 301
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.89 E-value=6e-23 Score=254.04 Aligned_cols=169 Identities=21% Similarity=0.240 Sum_probs=139.1
Q ss_pred CCcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhh
Q 006974 324 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKA 380 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~ 380 (623)
...++++||+|.|++ +.+ ++||.+.+| ++++|+||||||||||+|+| |++.+- .+.
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~G-Ei~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~ 2013 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPG-ECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQN 2013 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCC-cEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhh
Confidence 357999999999985 334 999999999 99999999999999999999 776431 112
Q ss_pred ceeecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974 381 GLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (623)
Q Consensus 381 G~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL 436 (623)
..|+|+... ..++. ++.++..+|+.+..++.+++|||||| |+++|++++.+|++||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLL 2093 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVL 2093 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 347888641 11111 22346677888888999999999999 7999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 437 LDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|||||+|+||..+..+.. ++..+.++|.+||+|||+++ ...+|+++..+.+|++.+.
T Consensus 2094 LDEPTsGLDp~sr~~l~~-lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~ 2151 (2272)
T TIGR01257 2094 LDEPTTGMDPQARRMLWN-TIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCL 2151 (2272)
T ss_pred EECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999 55566666889999999987 5679999999999998765
No 302
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.3e-22 Score=227.32 Aligned_cols=163 Identities=17% Similarity=0.147 Sum_probs=127.6
Q ss_pred EEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------h-------------hhceee
Q 006974 327 MTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S-------------KAGLYL 384 (623)
Q Consensus 327 l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------a-------------~~G~~v 384 (623)
++++|++.. ..+ ++||++.+| ++++|+||||||||||||++ |++.+. . +...|+
T Consensus 258 l~~~~~~~~---~~l~~isl~i~~G-e~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 333 (501)
T PRK11288 258 LRLDGLKGP---GLREPISFSVRAG-EIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLC 333 (501)
T ss_pred EEEeccccC---CcccceeEEEeCC-cEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEc
Confidence 556666632 233 999999999 99999999999999999999 775421 0 112366
Q ss_pred cCCC-----CCCccH---------------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhcC
Q 006974 385 PAKN-----HPRLPW---------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVS 430 (623)
Q Consensus 385 p~~~-----~~~l~~---------------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~~ 430 (623)
|+.. ...++. +..++..+|+. +..++++.+|||||+ |+.++++++.
T Consensus 334 ~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~ 413 (501)
T PRK11288 334 PEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSE 413 (501)
T ss_pred CcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHcc
Confidence 6642 000111 22345667773 567899999999999 8999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+|++|||||||+|||+.....+.. ++..+.+.|.++|++|||.+ +..+|++++.+.+|++.+.
T Consensus 414 ~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~ 477 (501)
T PRK11288 414 DMKVILLDEPTRGIDVGAKHEIYN-VIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGE 477 (501)
T ss_pred CCCEEEEcCCCCCCCHhHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEE
Confidence 999999999999999999999999 55567777899999999988 6689999999999987654
No 303
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.89 E-value=7.7e-23 Score=228.62 Aligned_cols=166 Identities=12% Similarity=0.150 Sum_probs=130.2
Q ss_pred cEEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhcee
Q 006974 326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLY 383 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G~~ 383 (623)
+++++|+++.|. ..+ ++||++.+| ++++|+||||||||||||++ |+..+. .+...|
T Consensus 250 ~i~~~~l~~~~~-~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~ 327 (491)
T PRK10982 250 ILEVRNLTSLRQ-PSIRDVSFDLHKG-EILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFAL 327 (491)
T ss_pred EEEEeCcccccC-cccceeeEEEeCC-cEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEE
Confidence 577888888752 233 999999999 99999999999999999999 765421 011236
Q ss_pred ecCCCC-----CCccH---------------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhc
Q 006974 384 LPAKNH-----PRLPW---------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELV 429 (623)
Q Consensus 384 vp~~~~-----~~l~~---------------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~ 429 (623)
+|+... ..+++ +..++..+++. +..++++++|||||+ |+.++++++
T Consensus 328 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~ 407 (491)
T PRK10982 328 VTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLL 407 (491)
T ss_pred cCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHh
Confidence 666421 11111 12344556664 457889999999999 899999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
.+|++|||||||+|+|+.....+.. ++..+.+.+.|+|++|||.+ +..+||+++.+.+|++...
T Consensus 408 ~~p~illLDEPt~gLD~~~~~~~~~-~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~ 472 (491)
T PRK10982 408 TQPEILMLDEPTRGIDVGAKFEIYQ-LIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGI 472 (491)
T ss_pred cCCCEEEEcCCCcccChhHHHHHHH-HHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999 55667777899999999987 6689999999999988743
No 304
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.5e-22 Score=207.65 Aligned_cols=166 Identities=17% Similarity=0.189 Sum_probs=134.3
Q ss_pred EEEceeeeecCC-----ccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh-hh---------------------
Q 006974 327 MTVGSLSKGISD-----FPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-LM--------------------- 377 (623)
Q Consensus 327 l~~~~l~~~y~~-----~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~-~~--------------------- 377 (623)
++++||+..|.. +.| ++||++.+| ++++|+|.+||||||+.++| |++. ..
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~G-E~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKG-EILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCC-cEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 578899999853 233 999999999 99999999999999999999 7774 20
Q ss_pred ------hhhceeecCCCCCCccH---------------------------HHHHHHHcCCch---hhhcccccccHHHH-
Q 006974 378 ------SKAGLYLPAKNHPRLPW---------------------------FDLILADIGDHQ---SLEQNLSTFSGHIS- 420 (623)
Q Consensus 378 ------a~~G~~vp~~~~~~l~~---------------------------~d~i~~~ig~~~---~~~~~~stfS~g~~- 420 (623)
.+..+++||++...+.. ...++..+|+.+ .++..+..|||||+
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 11235777775322211 113456677654 57899999999999
Q ss_pred HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 421 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 421 rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|+.+|++++.+|+|||.||||++||...++.+.. +++.+.+ .|.++|++|||+. ++.+||++.++..|.++..
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~-Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~ 235 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILD-LLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEE 235 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEe
Confidence 7999999999999999999999999999999999 6666765 6889999999999 6789999999999988654
No 305
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.89 E-value=1.7e-22 Score=221.09 Aligned_cols=167 Identities=17% Similarity=0.159 Sum_probs=137.1
Q ss_pred cEEEceeeeecCCc-----cc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------
Q 006974 326 EMTVGSLSKGISDF-----PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (623)
Q Consensus 326 ~l~~~~l~~~y~~~-----~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------- 377 (623)
.++++||++.|... .+ ++||++.+| ++++|+|.+||||||+.+++ |++..-
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~G-E~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPG-EILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCC-cEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 57899999999532 23 999999999 99999999999999999999 776532
Q ss_pred ------hhhceeecCCCCCCccH--------------------------HHHHHHHcCCchhhhc--ccccccHHHH-HH
Q 006974 378 ------SKAGLYLPAKNHPRLPW--------------------------FDLILADIGDHQSLEQ--NLSTFSGHIS-RI 422 (623)
Q Consensus 378 ------a~~G~~vp~~~~~~l~~--------------------------~d~i~~~ig~~~~~~~--~~stfS~g~~-rl 422 (623)
.....++||+....++. ..++|..+|+.+.... .+..|||||+ |+
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv 163 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV 163 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence 12235788876443332 1245777888766655 9999999999 79
Q ss_pred HHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974 423 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (623)
Q Consensus 423 ~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~ 493 (623)
.+|++++.+|+|||+||||++||+.....|.+++.+.-.+.|.++|++|||+. +..+||++.++.+|.++.
T Consensus 164 ~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 99999999999999999999999999999999555544467899999999999 678999999999998764
No 306
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.89 E-value=1.3e-22 Score=207.77 Aligned_cols=154 Identities=19% Similarity=0.208 Sum_probs=119.0
Q ss_pred ceeeeecCCcc-c--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhh--------------------------
Q 006974 330 GSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK-------------------------- 379 (623)
Q Consensus 330 ~~l~~~y~~~~-v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~-------------------------- 379 (623)
.+|+++|++.. + ++++ +.+| ++++|+||||||||||||++ |+..+-+.
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~G-e~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREG-QVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCC-CEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 47889997643 3 8884 8899 99999999999999999999 66542100
Q ss_pred -----h-ceeecCCCCCCcc------------------HHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcE
Q 006974 380 -----A-GLYLPAKNHPRLP------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (623)
Q Consensus 380 -----~-G~~vp~~~~~~l~------------------~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~L 434 (623)
. ..++|+.. ..++ .+..++..+|+.+..++.+.+||+|++ |+.++++++.+|++
T Consensus 82 ~~~~~~~i~~~~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~i 160 (255)
T cd03236 82 LLEGDVKVIVKPQYV-DLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADF 160 (255)
T ss_pred hhhcccceeeecchh-ccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 0 01223221 1111 123456778888888899999999999 79999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceee
Q 006974 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE 487 (623)
Q Consensus 435 lLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~ 487 (623)
+||||||+|+|+.....+.+ ++..+.+.++++|++||+++ +..+|+++..+.
T Consensus 161 lllDEPts~LD~~~~~~l~~-~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~ 213 (255)
T cd03236 161 YFFDEPSSYLDIKQRLNAAR-LIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY 213 (255)
T ss_pred EEEECCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC
Confidence 99999999999999999998 55566666889999999988 455899887774
No 307
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.89 E-value=6e-23 Score=196.17 Aligned_cols=128 Identities=34% Similarity=0.464 Sum_probs=105.3
Q ss_pred ccccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhh----------hceeecCCCCCCccHHHHHHHHcCCchhhhc
Q 006974 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSK----------AGLYLPAKNHPRLPWFDLILADIGDHQSLEQ 410 (623)
Q Consensus 341 v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~----------~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~ 410 (623)
+++++.+.++ .+++|||||||||||+|++++++..+++ .|+++|+.. ..+ ++..++
T Consensus 12 ~~~~i~~~~~-~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~-----i~~~~~------- 77 (162)
T cd03227 12 VPNDVTFGEG-SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVS-AEL-----IFTRLQ------- 77 (162)
T ss_pred eccEEecCCC-CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeE-EEE-----ehheee-------
Confidence 4677777777 7999999999999999999999999998 888888765 333 333332
Q ss_pred ccccccHHHH-HHHHHHHhcC----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccce
Q 006974 411 NLSTFSGHIS-RIVDILELVS----RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTR 485 (623)
Q Consensus 411 ~~stfS~g~~-rl~~~~~l~~----~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~ 485 (623)
+|+|++ ++.++..++. +|+++|+|||++|||+.++..+..++.+++.+ ++++|++||+.++...+++...
T Consensus 78 ----lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~~~~d~~~~ 152 (162)
T cd03227 78 ----LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELAELADKLIH 152 (162)
T ss_pred ----ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHhhhhEEE
Confidence 899998 5666666543 88999999999999999999999988887776 8899999999998888877665
Q ss_pred ee
Q 006974 486 FE 487 (623)
Q Consensus 486 i~ 487 (623)
+.
T Consensus 153 l~ 154 (162)
T cd03227 153 IK 154 (162)
T ss_pred EE
Confidence 53
No 308
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=1.5e-22 Score=189.97 Aligned_cols=166 Identities=20% Similarity=0.271 Sum_probs=136.4
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhh-h---------------hhhhceeecCC
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLAS-L---------------MSKAGLYLPAK 387 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~-~---------------~a~~G~~vp~~ 387 (623)
.++++|+.|+||...| ++|+....| +++.|+|.+|||||||||||.++- + ....|..+|++
T Consensus 6 ~l~v~dlHK~~G~~eVLKGvSL~A~~G-dVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 6 ALEVEDLHKRYGEHEVLKGVSLQANAG-DVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred ceehhHHHhhcccchhhcceeeecCCC-CEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence 5788999999998777 999999999 999999999999999999995542 1 12334455554
Q ss_pred CC-------------------CCccHH----------------------HHHHHHcCCchhhhcccccccHHHH-HHHHH
Q 006974 388 NH-------------------PRLPWF----------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDI 425 (623)
Q Consensus 388 ~~-------------------~~l~~~----------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~ 425 (623)
.. ..+++. ..++..+|+.+..+.++..||||++ |++++
T Consensus 85 ~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIA 164 (256)
T COG4598 85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIA 164 (256)
T ss_pred HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHH
Confidence 20 011111 2347788999999999999999999 89999
Q ss_pred HHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHH-hhccccceeeCceEEE
Q 006974 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEF 493 (623)
Q Consensus 426 ~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~-~~~~~~~~i~~g~~~~ 493 (623)
++++.+|.++|+||||+.|||+-...+.. ++..|.+.|.|.+++||.+.++ .++.+++.+.+|.++.
T Consensus 165 RaLameP~vmLFDEPTSALDPElVgEVLk-v~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE 232 (256)
T COG4598 165 RALAMEPEVMLFDEPTSALDPELVGEVLK-VMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE 232 (256)
T ss_pred HHHhcCCceEeecCCcccCCHHHHHHHHH-HHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc
Confidence 99999999999999999999999999988 8888999999999999999976 4677777788887654
No 309
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.88 E-value=1.8e-22 Score=188.20 Aligned_cols=165 Identities=21% Similarity=0.287 Sum_probs=134.9
Q ss_pred cEEEceeeeecCCc----cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh----------------------
Q 006974 326 EMTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------- 376 (623)
Q Consensus 326 ~l~~~~l~~~y~~~----~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~---------------------- 376 (623)
+|+++++++..|.. .| ++++.+.+| +.++|+||+||||||||-.+ ||-.+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~G-e~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~ 84 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRG-ETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCC-ceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHH
Confidence 45566666665432 23 899999999 99999999999999999998 55321
Q ss_pred -hhhhceeecCCCCCCccH------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcC
Q 006974 377 -MSKAGLYLPAKNHPRLPW------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS 430 (623)
Q Consensus 377 -~a~~G~~vp~~~~~~l~~------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~ 430 (623)
.+....||+|+. ..+|- ...++..+|+.+.+..++..||||++ |++++++++.
T Consensus 85 ~R~~~vGfVFQSF-~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~ 163 (228)
T COG4181 85 LRARHVGFVFQSF-HLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAG 163 (228)
T ss_pred hhccceeEEEEee-eccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcC
Confidence 122334677653 11111 23568899999999999999999998 8999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEE
Q 006974 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATE 492 (623)
Q Consensus 431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~ 492 (623)
.|++++-||||.+||...+..++..+...-++.|.|.+++|||..++.-|++.+.+.+|+++
T Consensus 164 ~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~ 225 (228)
T COG4181 164 RPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLV 225 (228)
T ss_pred CCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceec
Confidence 99999999999999999999999977666667899999999999999999999999999875
No 310
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.88 E-value=2.5e-22 Score=200.39 Aligned_cols=148 Identities=16% Similarity=0.127 Sum_probs=112.9
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhcee-------ecCC--C--CCCccHHHHH-----------
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLY-------LPAK--N--HPRLPWFDLI----------- 398 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~-------vp~~--~--~~~l~~~d~i----------- 398 (623)
++||++++| ++++|+||||||||||+|++ |+..+. .|.. ++.. . ...+++.+++
T Consensus 5 ~vs~~i~~G-e~~~l~G~NGsGKSTLlk~i~Gl~~~~--sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~ 81 (213)
T PRK15177 5 KTDFVMGYH-EHIGILAAPGSGKTTLTRLLCGLDAPD--EGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG 81 (213)
T ss_pred eeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCccCC--CCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence 789999999 99999999999999999999 665432 1211 1110 0 0112222322
Q ss_pred -------HHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Q 006974 399 -------LADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVT 470 (623)
Q Consensus 399 -------~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~ 470 (623)
...+++....++.++.||+||+ |++++++++.+|+++|||||++++|+.....+...+.+.+++ .++|++
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~--~~ii~v 159 (213)
T PRK15177 82 DEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQ--KGLIVL 159 (213)
T ss_pred HHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhC--CcEEEE
Confidence 1223444556778999999999 899999999999999999999999999999998866665543 568999
Q ss_pred cCchh-HHhhccccceeeCceEEEe
Q 006974 471 THYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 471 TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
||+++ +..+|+++..+.+|++.+.
T Consensus 160 sH~~~~~~~~~d~i~~l~~G~i~~~ 184 (213)
T PRK15177 160 THNPRLIKEHCHAFGVLLHGKITMC 184 (213)
T ss_pred ECCHHHHHHhcCeeEEEECCeEEEe
Confidence 99988 5579999999999998865
No 311
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.88 E-value=3.3e-22 Score=200.91 Aligned_cols=147 Identities=20% Similarity=0.249 Sum_probs=116.3
Q ss_pred ccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--------------hhceeecCCCCC----CccH-----------
Q 006974 345 IKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------------KAGLYLPAKNHP----RLPW----------- 394 (623)
Q Consensus 345 l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--------------~~G~~vp~~~~~----~l~~----------- 394 (623)
|++.+| ++++|+||||||||||+|++ |+..+.. +...|+|+.... .+..
T Consensus 1 l~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 79 (223)
T TIGR03771 1 LSADKG-ELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGH 79 (223)
T ss_pred CccCCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccc
Confidence 467889 99999999999999999999 6654311 123567765311 0111
Q ss_pred --------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006974 395 --------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459 (623)
Q Consensus 395 --------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~ 459 (623)
+..++..+|+.+..++.+++||+||+ |++++++++.+|+++|+||||+|+|+.....+... +..
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~-l~~ 158 (223)
T TIGR03771 80 IGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTEL-FIE 158 (223)
T ss_pred cccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHH
Confidence 22345666777777889999999999 79999999999999999999999999999999995 555
Q ss_pred HhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 460 LRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 460 l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+.+++.|+|++||+.+ +..+|++++.+ +|++...
T Consensus 159 ~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~ 193 (223)
T TIGR03771 159 LAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIAD 193 (223)
T ss_pred HHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEee
Confidence 6666889999999987 66799999888 7887654
No 312
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.88 E-value=2.1e-22 Score=249.30 Aligned_cols=168 Identities=23% Similarity=0.302 Sum_probs=137.6
Q ss_pred CCcEEEceeeeecC--Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhh
Q 006974 324 NSEMTVGSLSKGIS--DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKA 380 (623)
Q Consensus 324 ~~~l~~~~l~~~y~--~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~ 380 (623)
...++++||+|.|+ ++.+ +++|++.+| ++++|+||||||||||||++ |++.+. .+.
T Consensus 926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~G-ei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~ 1004 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYEN-QITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQS 1004 (2272)
T ss_pred CceEEEEeEEEEecCCCceEEEeeEEEEcCC-cEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhc
Confidence 34689999999995 3444 999999999 99999999999999999999 776431 112
Q ss_pred ceeecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974 381 GLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (623)
Q Consensus 381 G~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL 436 (623)
..|+|+... ..+++ +++++..+|+.+..++.+++|||||+ |+++|++++.+|++||
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLL 1084 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVV 1084 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 347787641 11111 23456778888888999999999999 7999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 437 LDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|||||+|+||..+..+.. ++..++ +|.++|++||+++ ...+||++..+.+|++...
T Consensus 1085 LDEPTSGLDp~sr~~l~~-lL~~l~-~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~ 1141 (2272)
T TIGR01257 1085 LDEPTSGVDPYSRRSIWD-LLLKYR-SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCS 1141 (2272)
T ss_pred EECCCcCCCHHHHHHHHH-HHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999 455555 4889999999998 4568999999999998765
No 313
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.88 E-value=2.6e-22 Score=224.90 Aligned_cols=163 Identities=15% Similarity=0.206 Sum_probs=128.8
Q ss_pred cEEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhcee
Q 006974 326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLY 383 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G~~ 383 (623)
.++++|+++. .+ ++||++.+| ++++|+||||||||||||++ |++.+. .+.-.|
T Consensus 257 ~l~~~~l~~~----~l~~vsl~i~~G-e~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~ 331 (501)
T PRK10762 257 RLKVDNLSGP----GVNDVSFTLRKG-EILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVY 331 (501)
T ss_pred EEEEeCcccC----CcccceEEEcCC-cEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEE
Confidence 3567777752 24 899999999 99999999999999999999 775421 011357
Q ss_pred ecCCCC-----CCccH---------------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhc
Q 006974 384 LPAKNH-----PRLPW---------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELV 429 (623)
Q Consensus 384 vp~~~~-----~~l~~---------------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~ 429 (623)
+|+... ..+++ ++.++..+|+. ...++.+.+|||||+ |+.+|++++
T Consensus 332 v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~ 411 (501)
T PRK10762 332 ISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLM 411 (501)
T ss_pred ecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHh
Confidence 777631 11111 22455667774 567889999999999 899999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
.+|+++||||||+|||+.....+.. ++..+.++|.++|++||+.+ +..+|++++.+.+|++...
T Consensus 412 ~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 476 (501)
T PRK10762 412 TRPKVLILDEPTRGVDVGAKKEIYQ-LINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGE 476 (501)
T ss_pred hCCCEEEEcCCCCCCCHhHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999 45556666889999999987 6689999999999988654
No 314
>PLN03073 ABC transporter F family; Provisional
Probab=99.88 E-value=4.5e-22 Score=229.92 Aligned_cols=165 Identities=19% Similarity=0.151 Sum_probs=123.8
Q ss_pred CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh-hhhhhc--eeecCCCC-CCccH---
Q 006974 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-LMSKAG--LYLPAKNH-PRLPW--- 394 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~-~~a~~G--~~vp~~~~-~~l~~--- 394 (623)
..|.++|++++|++..+ ++||++.+| ++++|+||||||||||||+| |... -....| .|+++... ..++.
T Consensus 176 ~~I~i~nls~~y~~~~ll~~isl~i~~G-e~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~ 254 (718)
T PLN03073 176 KDIHMENFSISVGGRDLIVDASVTLAFG-RHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQC 254 (718)
T ss_pred eeEEEceEEEEeCCCEEEECCEEEECCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHH
Confidence 35899999999987666 999999999 99999999999999999999 4320 000011 12232200 00000
Q ss_pred ---------------------------------------------------------------------HHHHHHHcCCc
Q 006974 395 ---------------------------------------------------------------------FDLILADIGDH 405 (623)
Q Consensus 395 ---------------------------------------------------------------------~d~i~~~ig~~ 405 (623)
...++..+|+.
T Consensus 255 v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~ 334 (718)
T PLN03073 255 VLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFT 334 (718)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCC
Confidence 01123334443
Q ss_pred -hhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccc
Q 006974 406 -QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDK 482 (623)
Q Consensus 406 -~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~ 482 (623)
...++++++||||++ |++++++++.+|++|||||||+|||+.....|...+.+ .+.|+|++||+.+ +..+|++
T Consensus 335 ~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~----~~~tviivsHd~~~l~~~~d~ 410 (718)
T PLN03073 335 PEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLK----WPKTFIVVSHAREFLNTVVTD 410 (718)
T ss_pred hHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH----cCCEEEEEECCHHHHHHhCCE
Confidence 345778999999999 89999999999999999999999999999888774433 3789999999988 5678999
Q ss_pred cceeeCceEEEe
Q 006974 483 DTRFENAATEFS 494 (623)
Q Consensus 483 ~~~i~~g~~~~~ 494 (623)
++.+.+|++...
T Consensus 411 i~~l~~g~i~~~ 422 (718)
T PLN03073 411 ILHLHGQKLVTY 422 (718)
T ss_pred EEEEECCEEEEe
Confidence 999999988654
No 315
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.88 E-value=4.9e-22 Score=225.27 Aligned_cols=169 Identities=17% Similarity=0.168 Sum_probs=131.0
Q ss_pred CcEEEceeeeecCCc-----cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------
Q 006974 325 SEMTVGSLSKGISDF-----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------- 377 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~-----~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------- 377 (623)
+.++++||+++|++. ++ ++||++++| ++++|+||||||||||++++ |+..+-
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G-~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~ 414 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQG-DIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDY 414 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH
Confidence 468999999999752 34 999999999 99999999999999999999 544321
Q ss_pred hhhceeecCCCCC---Cc-----c-----HHHHHHHHcCCchhhhc------ccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974 378 SKAGLYLPAKNHP---RL-----P-----WFDLILADIGDHQSLEQ------NLSTFSGHIS-RIVDILELVSRESLVLI 437 (623)
Q Consensus 378 a~~G~~vp~~~~~---~l-----~-----~~d~i~~~ig~~~~~~~------~~stfS~g~~-rl~~~~~l~~~~~LlLL 437 (623)
...-.++|++... .+ + -+.+.+...++.+.+.. ....||||++ |++++++++.+|+++||
T Consensus 415 ~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ilil 494 (555)
T TIGR01194 415 RDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLF 494 (555)
T ss_pred HhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 1112355554310 00 0 12234556666655432 2368999999 89999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 438 DEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
||||+++|+.....+.+.+++.+...+.|+|++||+.+....||++..+++|++..+
T Consensus 495 DE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 495 DEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999887776666668899999999987789999999999988644
No 316
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.88 E-value=5.1e-22 Score=224.82 Aligned_cols=168 Identities=17% Similarity=0.180 Sum_probs=131.7
Q ss_pred CcEEEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhc
Q 006974 325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 381 (623)
Q Consensus 325 ~~l~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G 381 (623)
+.++++||+++|++ .++ ++||++++| +.++|+||||||||||+|++ |+..+. .+..
T Consensus 321 ~~i~~~~v~f~y~~~~~~l~~i~~~i~~G-~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 399 (547)
T PRK10522 321 QTLELRNVTFAYQDNGFSVGPINLTIKRG-ELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLF 399 (547)
T ss_pred ceEEEEEEEEEeCCCCeEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhhe
Confidence 35899999999964 334 999999999 99999999999999999999 655321 1223
Q ss_pred eeecCCCCCCcc-------------HHHHHHHHcCCchhhhcc-----cccccHHHH-HHHHHHHhcCCCcEEEEeCCCC
Q 006974 382 LYLPAKNHPRLP-------------WFDLILADIGDHQSLEQN-----LSTFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (623)
Q Consensus 382 ~~vp~~~~~~l~-------------~~d~i~~~ig~~~~~~~~-----~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~ 442 (623)
.|+|++.. .++ .+...+..+|.......+ -..||||++ |++++++++.+|+++||||||+
T Consensus 400 ~~v~q~~~-lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts 478 (547)
T PRK10522 400 SAVFTDFH-LFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAA 478 (547)
T ss_pred EEEecChh-HHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 46666541 110 122345566665544322 358999999 8999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 443 GTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 443 glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
++|+.....+.+.+.+.++..+.|+|++||+.+....||++..+++|++...
T Consensus 479 ~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 479 DQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 9999999999887766655557899999999988889999999999988654
No 317
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.88 E-value=2.5e-22 Score=229.96 Aligned_cols=167 Identities=20% Similarity=0.251 Sum_probs=130.2
Q ss_pred CCcEEEceeeeecCCc--cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhh
Q 006974 324 NSEMTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK 379 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~~--~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~ 379 (623)
.|.++++||+++|+.. .+ ++|+++++| +.++|+|+||||||||+|.+ |+..+ +.+
T Consensus 469 ~g~I~~~nvsf~y~~~~~~vL~~isL~I~~G-e~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~ 547 (709)
T COG2274 469 QGEIEFENVSFRYGPDDPPVLEDLSLEIPPG-EKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRR 547 (709)
T ss_pred CceEEEEEEEEEeCCCCcchhhceeEEeCCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHh
Confidence 3679999999999754 34 999999999 99999999999999999999 55543 122
Q ss_pred hceeecCCCCCCc--cHH------------HHH---HHHcCCchh-----------hhcccccccHHHH-HHHHHHHhcC
Q 006974 380 AGLYLPAKNHPRL--PWF------------DLI---LADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVS 430 (623)
Q Consensus 380 ~G~~vp~~~~~~l--~~~------------d~i---~~~ig~~~~-----------~~~~~stfS~g~~-rl~~~~~l~~ 430 (623)
...+||++.. .+ +.. +++ ...-|..+. +...-+.||||+| |+++|+++..
T Consensus 548 ~ig~V~Q~~~-Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~ 626 (709)
T COG2274 548 QVGYVLQDPF-LFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLS 626 (709)
T ss_pred heeEEcccch-hhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhcc
Confidence 3346666541 11 011 122 222333333 3456788999999 8999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
+|+++||||||++||+.....+.+.+.+.. .|+|+|++||.......||++++++.|++..+
T Consensus 627 ~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~ 688 (709)
T COG2274 627 KPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQ 688 (709)
T ss_pred CCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEEccchHhhhccEEEEccCCceecc
Confidence 999999999999999999999888665542 25899999999999999999999999998765
No 318
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.87 E-value=4.9e-22 Score=212.24 Aligned_cols=158 Identities=20% Similarity=0.265 Sum_probs=133.6
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCC--------------
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH-------------- 389 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~-------------- 389 (623)
.+++++++|.|++... ++||++.+| ++.+|+|.||+|||||||++ .|.|.|.+|.
T Consensus 4 ~l~~~~itK~f~~~~And~V~l~v~~G-eIHaLLGENGAGKSTLm~iL--------~G~~~P~~GeI~v~G~~v~~~sP~ 74 (501)
T COG3845 4 ALEMRGITKRFPGVVANDDVSLSVKKG-EIHALLGENGAGKSTLMKIL--------FGLYQPDSGEIRVDGKEVRIKSPR 74 (501)
T ss_pred eEEEeccEEEcCCEEecCceeeeecCC-cEEEEeccCCCCHHHHHHHH--------hCcccCCcceEEECCEEeccCCHH
Confidence 4789999999996444 899999999 99999999999999999999 5555555541
Q ss_pred -----------------CCccHHH------------------------HHHHHcCCchhhhcccccccHHHH-HHHHHHH
Q 006974 390 -----------------PRLPWFD------------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILE 427 (623)
Q Consensus 390 -----------------~~l~~~d------------------------~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~ 427 (623)
..+++++ .+..+.|+.=+.+..++.||.|++ |+.++.+
T Consensus 75 dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKa 154 (501)
T COG3845 75 DAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKA 154 (501)
T ss_pred HHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHH
Confidence 1122222 345566777778899999999999 6888888
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (623)
Q Consensus 428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~ 493 (623)
+..++++|||||||+-|-|.+...|.. +++.+++.|++||++||-++ +.++||+..++..|++.-
T Consensus 155 Lyr~a~iLILDEPTaVLTP~E~~~lf~-~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 155 LYRGARLLILDEPTAVLTPQEADELFE-ILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 999999999999999999999999999 78889999999999999975 889999999999998753
No 319
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=5.5e-22 Score=185.21 Aligned_cols=165 Identities=22% Similarity=0.234 Sum_probs=122.1
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-------------------------
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------------------------- 378 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------------------------- 378 (623)
+++.++++.||...- ++||.+.+| ++++|+|.+||||||||+++ |-+.+.+
T Consensus 7 L~V~~lsk~Yg~~~gc~~vsF~l~PG-eVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~ 85 (258)
T COG4107 7 LSVSGLSKLYGPGKGCRDVSFDLYPG-EVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRR 85 (258)
T ss_pred eeehhhhhhhCCCcCccccceeecCC-cEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHH
Confidence 567889999986443 999999999 99999999999999999999 3322110
Q ss_pred ----hhceeecCCCC----------CCccH---------H-------HHHHHHcCC-chhhhcccccccHHHH-HHHHHH
Q 006974 379 ----KAGLYLPAKNH----------PRLPW---------F-------DLILADIGD-HQSLEQNLSTFSGHIS-RIVDIL 426 (623)
Q Consensus 379 ----~~G~~vp~~~~----------~~l~~---------~-------d~i~~~ig~-~~~~~~~~stfS~g~~-rl~~~~ 426 (623)
.-| ||-+.+. ..++- + ..++.++.+ .+.++..+.+|||||+ |+.+|+
T Consensus 86 L~RTeWG-~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiAR 164 (258)
T COG4107 86 LLRTEWG-FVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIAR 164 (258)
T ss_pred Hhhhccc-eeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHH
Confidence 011 2222110 01110 1 123444443 3457788999999999 899999
Q ss_pred HhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHh-hccccceeeCceEEE
Q 006974 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC-LKDKDTRFENAATEF 493 (623)
Q Consensus 427 ~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~-~~~~~~~i~~g~~~~ 493 (623)
.+++.|.|+++||||.|||..-.+.|...+.....+.+..++++|||+.++. ++++..++..|.+..
T Consensus 165 nLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve 232 (258)
T COG4107 165 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232 (258)
T ss_pred HhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEec
Confidence 9999999999999999999999999999444444466889999999998765 678888888887654
No 320
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.6e-21 Score=190.50 Aligned_cols=167 Identities=23% Similarity=0.273 Sum_probs=132.4
Q ss_pred cEEEceeeeecCCc-cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh---------------------hhhh
Q 006974 326 EMTVGSLSKGISDF-PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------MSKA 380 (623)
Q Consensus 326 ~l~~~~l~~~y~~~-~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~---------------------~a~~ 380 (623)
+++++||+.+-+++ .+ ++|+++.+| ++.+|.||||||||||.++| |.-.| .|+.
T Consensus 3 ~L~I~dLhv~v~~~keILkgvnL~v~~G-EvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 3 MLEIKDLHVEVEGKKEILKGVNLTVKEG-EVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred eeEEeeeEEEecCchhhhcCcceeEcCC-cEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 57899999999874 66 999999999 99999999999999999999 44322 3677
Q ss_pred ceeecCCCCCCccH---------------------------HHHHHHHcCCch-hhhcccc-cccHHHH-HHHHHHHhcC
Q 006974 381 GLYLPAKNHPRLPW---------------------------FDLILADIGDHQ-SLEQNLS-TFSGHIS-RIVDILELVS 430 (623)
Q Consensus 381 G~~vp~~~~~~l~~---------------------------~d~i~~~ig~~~-~~~~~~s-tfS~g~~-rl~~~~~l~~ 430 (623)
|.|+..+..+.++. +...++.++... .+++.+. .||||++ |.-++..++.
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~l 161 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLL 161 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhc
Confidence 77664433233332 122345556554 6677776 7999999 5555566899
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhc--cccceeeCceEEEe
Q 006974 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLK--DKDTRFENAATEFS 494 (623)
Q Consensus 431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~--~~~~~i~~g~~~~~ 494 (623)
+|+++|||||-||+|...-..++. .++.+++.+..++++|||..+..+. |.+-++.+|++...
T Consensus 162 ePkl~ILDE~DSGLDIdalk~V~~-~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~s 226 (251)
T COG0396 162 EPKLAILDEPDSGLDIDALKIVAE-GINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKS 226 (251)
T ss_pred CCCEEEecCCCcCccHHHHHHHHH-HHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEec
Confidence 999999999999999999999998 6778888899999999999987765 77778899998876
No 321
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5.6e-22 Score=213.31 Aligned_cols=158 Identities=18% Similarity=0.178 Sum_probs=130.0
Q ss_pred cEEEceeeeecCCcc--c--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccH-------
Q 006974 326 EMTVGSLSKGISDFP--V--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW------- 394 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~--v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~------- 394 (623)
.++++||+|+|++.. + ++||++.+| +.++|+|++||||||++..+ .|.|.|++|...+..
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~G-EkvAIlG~SGsGKSTllqLl--------~~~~~~~~G~i~~~g~~~~~l~ 406 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQG-EKVAILGRSGSGKSTLLQLL--------AGAWDPQQGSITLNGVEIASLD 406 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCC-CeEEEECCCCCCHHHHHHHH--------HhccCCCCCeeeECCcChhhCC
Confidence 689999999997654 4 999999999 99999999999999999999 777777766321110
Q ss_pred -------------------------------------HHHHHHHcCCchh-----------hhcccccccHHHH-HHHHH
Q 006974 395 -------------------------------------FDLILADIGDHQS-----------LEQNLSTFSGHIS-RIVDI 425 (623)
Q Consensus 395 -------------------------------------~d~i~~~ig~~~~-----------~~~~~stfS~g~~-rl~~~ 425 (623)
+..++..+|+.+. +...-..||||++ |++++
T Consensus 407 ~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlA 486 (573)
T COG4987 407 EQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALA 486 (573)
T ss_pred hhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHH
Confidence 1123555555443 3445678999999 89999
Q ss_pred HHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 426 ~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
+.+.++.+++||||||.||||.....+...+.+.+. ++|+|++||+..-.+.+|++++++||+....
T Consensus 487 R~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~~le~~drIivl~~Gkiie~ 553 (573)
T COG4987 487 RALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLRGLERMDRIIVLDNGKIIEE 553 (573)
T ss_pred HHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccccHhhcCEEEEEECCeeeec
Confidence 999999999999999999999999999986666544 7899999999988889999999999998765
No 322
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=7.1e-22 Score=200.11 Aligned_cols=150 Identities=20% Similarity=0.172 Sum_probs=126.6
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------------hhhceeecCCCCCCccH---
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGLYLPAKNHPRLPW--- 394 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------------a~~G~~vp~~~~~~l~~--- 394 (623)
++||+++.| ++++|.|-+|||||||+|++ +|+.+- .+.-+.|+|+. ..+|+
T Consensus 46 ~~sl~v~~G-eIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~F-aLlPhrtV 123 (386)
T COG4175 46 DASLDVEEG-EIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSF-ALLPHRTV 123 (386)
T ss_pred cceeeecCC-eEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhh-ccccchhH
Confidence 889999999 99999999999999999999 666431 12233455542 34443
Q ss_pred ---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHH
Q 006974 395 ---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVAL 452 (623)
Q Consensus 395 ---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l 452 (623)
....+..+|+.+..++++..|||||+ |+-+|++++++|+++|+|||++.|||--+..+
T Consensus 124 l~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~m 203 (386)
T COG4175 124 LENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEM 203 (386)
T ss_pred hhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHH
Confidence 22457889999999999999999999 89999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEEEcCchhH-HhhccccceeeCceEEE
Q 006974 453 ATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEF 493 (623)
Q Consensus 453 ~~all~~l~~~~~~vii~TH~~~l-~~~~~~~~~i~~g~~~~ 493 (623)
-.-+++.-.+.+.|++|+|||++. ..+.+++-.+++|++.-
T Consensus 204 QdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ 245 (386)
T COG4175 204 QDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQ 245 (386)
T ss_pred HHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEE
Confidence 998888777778999999999884 47899999999998764
No 323
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.87 E-value=9.9e-22 Score=222.39 Aligned_cols=168 Identities=24% Similarity=0.238 Sum_probs=128.7
Q ss_pred CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh
Q 006974 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 380 (623)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~ 380 (623)
+.++++|++++|++ ..+ +++|++++| +.++|+||||||||||+|++ |+..+- .+.
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G-~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~ 393 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAG-EALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKH 393 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhh
Confidence 45899999999953 344 999999999 99999999999999999999 665431 123
Q ss_pred ceeecCCCCC-CccHHHHH---------------HH---------Hc--CCchhhhcccccccHHHH-HHHHHHHhcCCC
Q 006974 381 GLYLPAKNHP-RLPWFDLI---------------LA---------DI--GDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (623)
Q Consensus 381 G~~vp~~~~~-~l~~~d~i---------------~~---------~i--g~~~~~~~~~stfS~g~~-rl~~~~~l~~~~ 432 (623)
..|+|++... .-++.+++ +. .+ |++..+.....+|||||+ |+++|++++.+|
T Consensus 394 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~ 473 (544)
T TIGR01842 394 IGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDP 473 (544)
T ss_pred eEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCC
Confidence 3577776421 00112222 11 22 222234455788999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
+++||||||+|+|+.....+.+.+. .+...+.|+|++||+.+....||+++.+.+|++...
T Consensus 474 ~ililDEpts~LD~~~~~~i~~~l~-~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~ 534 (544)
T TIGR01842 474 KLVVLDEPNSNLDEEGEQALANAIK-ALKARGITVVVITHRPSLLGCVDKILVLQDGRIARF 534 (544)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHH-HHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEee
Confidence 9999999999999999999988544 455457899999999987788999999999987643
No 324
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.87 E-value=1.1e-21 Score=227.89 Aligned_cols=164 Identities=16% Similarity=0.163 Sum_probs=129.1
Q ss_pred CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh
Q 006974 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 380 (623)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~ 380 (623)
+.++++||+++|++ +++ ++||++++| +.++|+||||||||||+|++ |+..+. .+.
T Consensus 450 ~~I~~~nvsf~Y~~~~~~vL~~isl~i~~G-e~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 528 (686)
T TIGR03797 450 GAIEVDRVTFRYRPDGPLILDDVSLQIEPG-EFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQ 528 (686)
T ss_pred ceEEEEEEEEEcCCCCccceeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhc
Confidence 46899999999952 345 999999999 99999999999999999999 665431 223
Q ss_pred ceeecCCCCCCc--cH--------------HHHHHHHcCCchhhh-----------cccccccHHHH-HHHHHHHhcCCC
Q 006974 381 GLYLPAKNHPRL--PW--------------FDLILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVSRE 432 (623)
Q Consensus 381 G~~vp~~~~~~l--~~--------------~d~i~~~ig~~~~~~-----------~~~stfS~g~~-rl~~~~~l~~~~ 432 (623)
..|+||+.. .+ ++ +.+++...|+.+.+. ..-+.||||++ |+++|++++.+|
T Consensus 529 i~~v~Q~~~-lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p 607 (686)
T TIGR03797 529 LGVVLQNGR-LMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKP 607 (686)
T ss_pred cEEEccCCc-cCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 457787752 11 11 223344445544432 34468999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
+++||||||+++|+.....+.+.+.+. ++|+|++||..+....+|+++++++|++..+
T Consensus 608 ~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~ 665 (686)
T TIGR03797 608 RILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQ 665 (686)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecChHHHHcCCEEEEEECCEEEEE
Confidence 999999999999999999988865442 5799999999997788999999999998754
No 325
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.87 E-value=1.4e-21 Score=213.95 Aligned_cols=170 Identities=16% Similarity=0.124 Sum_probs=136.8
Q ss_pred CCcEEEceeeeecCC------c---c---c-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhh----------
Q 006974 324 NSEMTVGSLSKGISD------F---P---V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK---------- 379 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~------~---~---v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~---------- 379 (623)
.-.++++||++.|.. . . | ++||++.+| ++++|+|++||||||+.|++ |+..+-+.
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~G-E~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREG-ETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 346789999999972 1 1 3 999999999 99999999999999999999 77654210
Q ss_pred -----------hceeecCCCCCCccH--------------------------HHHHHHHcCCch-hhhcccccccHHHH-
Q 006974 380 -----------AGLYLPAKNHPRLPW--------------------------FDLILADIGDHQ-SLEQNLSTFSGHIS- 420 (623)
Q Consensus 380 -----------~G~~vp~~~~~~l~~--------------------------~d~i~~~ig~~~-~~~~~~stfS~g~~- 420 (623)
.-.+++|+.+..+.+ ++.++..+|+.. .+++.+..||||++
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQ 436 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQ 436 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhH
Confidence 011233333222211 344578888876 58999999999999
Q ss_pred HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 421 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 421 rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|+++|++++.+|.++++|||++.||+.....+.+.+.+.-.+.|.|.||+|||+. +..+||++.++.+|+++..
T Consensus 437 RvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~ 511 (539)
T COG1123 437 RVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEE 511 (539)
T ss_pred HHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEe
Confidence 8999999999999999999999999999999999666655566999999999999 5679999999999998755
No 326
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=7.2e-22 Score=187.79 Aligned_cols=160 Identities=19% Similarity=0.285 Sum_probs=132.0
Q ss_pred EEEceeeeecCCcc--c--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh---------------hhceeecC
Q 006974 327 MTVGSLSKGISDFP--V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS---------------KAGLYLPA 386 (623)
Q Consensus 327 l~~~~l~~~y~~~~--v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a---------------~~G~~vp~ 386 (623)
+.+++++.+|++++ + ++|+++.+| +.++++||+||||||||+.+ |++.+-. .. ..|+|
T Consensus 4 l~~~~~sl~y~g~~~~~le~vsL~ia~g-e~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaer-gvVFQ 81 (259)
T COG4525 4 LNVSHLSLSYEGKPRSALEDVSLTIASG-ELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAER-GVVFQ 81 (259)
T ss_pred eehhheEEecCCcchhhhhccceeecCC-CEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccc-eeEec
Confidence 45678999998776 3 999999999 99999999999999999999 5554421 11 24555
Q ss_pred CCCCCccHH------------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974 387 KNHPRLPWF------------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (623)
Q Consensus 387 ~~~~~l~~~------------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~ 441 (623)
+. ..+||. .+.+..+|+.+.-++.+-.|||||+ |+-++++++-+|.+++||||+
T Consensus 82 ~~-~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPf 160 (259)
T COG4525 82 NE-ALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPF 160 (259)
T ss_pred cC-ccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCch
Confidence 53 556652 2456778888888999999999999 899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHh-hccccceeeCc
Q 006974 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC-LKDKDTRFENA 489 (623)
Q Consensus 442 ~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~-~~~~~~~i~~g 489 (623)
..+|.-.+..+-..+++...+.|..++++||+.+.+- ++++.+++..+
T Consensus 161 gAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~ 209 (259)
T COG4525 161 GALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPG 209 (259)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCC
Confidence 9999999999999999988888999999999988654 67777666543
No 327
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.87 E-value=3.9e-22 Score=213.89 Aligned_cols=164 Identities=24% Similarity=0.272 Sum_probs=132.9
Q ss_pred CcEEEceeeeecCCcc-c--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeecCCCCCCcc-------
Q 006974 325 SEMTVGSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLP------- 393 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~-v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp~~~~~~l~------- 393 (623)
-++.++||+|+|.+.+ + +++|-++.+ ..++++||||+|||||||++ |.+.+. .|...|..+ ..++
T Consensus 388 pvi~~~nv~F~y~~~~~iy~~l~fgid~~-srvAlVGPNG~GKsTLlKl~~gdl~p~--~G~vs~~~H-~~~~~y~Qh~~ 463 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNPMIYKKLNFGIDLD-SRVALVGPNGAGKSTLLKLITGDLQPT--IGMVSRHSH-NKLPRYNQHLA 463 (614)
T ss_pred CeEEEeccccCCCCcchhhhhhhcccCcc-cceeEecCCCCchhhhHHHHhhccccc--ccccccccc-ccchhhhhhhH
Confidence 3688999999997663 3 899999999 89999999999999999999 555443 222222221 1222
Q ss_pred ------------------------HHHHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHH
Q 006974 394 ------------------------WFDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (623)
Q Consensus 394 ------------------------~~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~ 447 (623)
.+..++.++|+. +....++++||+|++ |+.+++..+..|.+|||||||+|+|..
T Consensus 464 e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~ 543 (614)
T KOG0927|consen 464 EQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIE 543 (614)
T ss_pred hhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCch
Confidence 234567788876 667889999999999 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEecC
Q 006974 448 EGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSLE 496 (623)
Q Consensus 448 ~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~~~ 496 (623)
...+++++|-++ .+++|++|||.. +..+++.++.+.|+.+....+
T Consensus 544 tid~laeaiNe~----~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G 589 (614)
T KOG0927|consen 544 TIDALAEAINEF----PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDG 589 (614)
T ss_pred hHHHHHHHHhcc----CCceeeeechhhHHHHHHHHhHhhccCceeecCc
Confidence 999999976665 889999999987 678999999999998776554
No 328
>PRK13409 putative ATPase RIL; Provisional
Probab=99.87 E-value=1.3e-21 Score=222.15 Aligned_cols=153 Identities=21% Similarity=0.190 Sum_probs=120.0
Q ss_pred eeeeecCCc-cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-h--------------hc----------
Q 006974 331 SLSKGISDF-PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-K--------------AG---------- 381 (623)
Q Consensus 331 ~l~~~y~~~-~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-~--------------~G---------- 381 (623)
+++++||.+ ++ +++ .+.+| ++++|+||||+|||||||++ |++.+.. . .|
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~G-ev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEG-KVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred CceEEecCCceeEecCC-cCCCC-CEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 488999864 34 888 79999 99999999999999999999 6654210 0 00
Q ss_pred -------eeecCCCCCCc------c------------HHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974 382 -------LYLPAKNHPRL------P------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (623)
Q Consensus 382 -------~~vp~~~~~~l------~------------~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll 435 (623)
.+.|+.. ... . -++.++..+|+....++.+++|||||+ |++++++++.+|+++
T Consensus 156 ~~~~~~~~~~~q~~-~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~ll 234 (590)
T PRK13409 156 YNGEIKVVHKPQYV-DLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFY 234 (590)
T ss_pred hccCcceeecccch-hhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 1222211 000 1 123456778888888999999999999 799999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeC
Q 006974 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (623)
Q Consensus 436 LLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~ 488 (623)
||||||+|||+.....+.. ++..+.+ +.++|++||+++ +..++|++..+.+
T Consensus 235 lLDEPts~LD~~~~~~l~~-~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~ 286 (590)
T PRK13409 235 FFDEPTSYLDIRQRLNVAR-LIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYG 286 (590)
T ss_pred EEECCCCCCCHHHHHHHHH-HHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999999 5666777 899999999988 6678888877754
No 329
>PLN03211 ABC transporter G-25; Provisional
Probab=99.87 E-value=1.1e-21 Score=225.38 Aligned_cols=165 Identities=18% Similarity=0.243 Sum_probs=130.5
Q ss_pred EEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeecCC
Q 006974 328 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAK 387 (623)
Q Consensus 328 ~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp~~ 387 (623)
.++|++++|+++.+ ++|+++.+| ++++|+|||||||||||+++ |....- .+...|+|++
T Consensus 70 ~~~~l~~~~~~~~iL~~vs~~i~~G-e~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~ 148 (659)
T PLN03211 70 KISDETRQIQERTILNGVTGMASPG-EILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQD 148 (659)
T ss_pred ccccccccCCCCeeeeCCEEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcc
Confidence 46678899987666 999999999 99999999999999999999 665321 1123577776
Q ss_pred CC--CCccH------------------------HHHHHHHcCCchhh-----hcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974 388 NH--PRLPW------------------------FDLILADIGDHQSL-----EQNLSTFSGHIS-RIVDILELVSRESLV 435 (623)
Q Consensus 388 ~~--~~l~~------------------------~d~i~~~ig~~~~~-----~~~~stfS~g~~-rl~~~~~l~~~~~Ll 435 (623)
.. ..+++ ++.++..+|+.+.. +...+.|||||+ |++++++++.+|+++
T Consensus 149 ~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iL 228 (659)
T PLN03211 149 DILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 228 (659)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEE
Confidence 41 11122 22345556665433 345678999999 899999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh--HHhhccccceeeCceEEEe
Q 006974 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 436 LLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~--l~~~~~~~~~i~~g~~~~~ 494 (623)
||||||+|||+.....+.. ++..+.++|.|+|++||+.+ +..++|++..+.+|++.+.
T Consensus 229 lLDEPtsgLD~~~~~~l~~-~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~ 288 (659)
T PLN03211 229 ILDEPTSGLDATAAYRLVL-TLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFF 288 (659)
T ss_pred EEeCCCCCcCHHHHHHHHH-HHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEE
Confidence 9999999999999999999 55567767899999999975 5789999999999998775
No 330
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.87 E-value=1.7e-21 Score=221.72 Aligned_cols=166 Identities=18% Similarity=0.177 Sum_probs=131.9
Q ss_pred CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh
Q 006974 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 380 (623)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~ 380 (623)
+.++++||+++|++ +.+ ++||++++| +.++|+||||||||||+|++ |+..+. .+.
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G-~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 415 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAG-EKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQA 415 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhh
Confidence 46999999999964 334 999999999 99999999999999999999 665431 122
Q ss_pred ceeecCCCCCCc--c---------------HHHHHHHHcCCchhhhc----------ccccccHHHH-HHHHHHHhcCCC
Q 006974 381 GLYLPAKNHPRL--P---------------WFDLILADIGDHQSLEQ----------NLSTFSGHIS-RIVDILELVSRE 432 (623)
Q Consensus 381 G~~vp~~~~~~l--~---------------~~d~i~~~ig~~~~~~~----------~~stfS~g~~-rl~~~~~l~~~~ 432 (623)
..|+||+.. .+ + -+.+.+...|+.+.+++ ....||||++ |+++|++++.+|
T Consensus 416 i~~v~Q~~~-lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~ 494 (574)
T PRK11160 416 ISVVSQRVH-LFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDA 494 (574)
T ss_pred eeEEcccch-hhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 357777641 11 1 12334556666666554 5678999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
+++||||||+++|+.....+..++.+ +. ++.|+|++||+.+....||++..+++|++...
T Consensus 495 ~ililDE~ts~lD~~t~~~i~~~l~~-~~-~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~ 554 (574)
T PRK11160 495 PLLLLDEPTEGLDAETERQILELLAE-HA-QNKTVLMITHRLTGLEQFDRICVMDNGQIIEQ 554 (574)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHH-Hc-CCCEEEEEecChhHHHhCCEEEEEeCCeEEEe
Confidence 99999999999999999999996554 43 37899999999987777999999999988654
No 331
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.86 E-value=5e-22 Score=184.70 Aligned_cols=149 Identities=26% Similarity=0.322 Sum_probs=120.2
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHHhhh-hhh-------------------hhhceeecCCC---------CCCc
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLA-SLM-------------------SKAGLYLPAKN---------HPRL 392 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~-~~~-------------------a~~G~~vp~~~---------~~~l 392 (623)
|+||.+.+| +.++||||+|||||||+|+++.+ .+- .|-.+|+-+.+ +..+
T Consensus 21 ~isl~v~~G-e~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlif 99 (223)
T COG4619 21 NISLSVRAG-EFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIF 99 (223)
T ss_pred ceeeeecCC-ceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhcccc
Confidence 999999999 99999999999999999999543 221 12222333322 0122
Q ss_pred cH-----------HHHHHHHcCCchh-hhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006974 393 PW-----------FDLILADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459 (623)
Q Consensus 393 ~~-----------~d~i~~~ig~~~~-~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~ 459 (623)
|+ +-.+++++++.+. +.+++..+|||++ |+++++.+..-|+++||||||+.||+.....+...|..+
T Consensus 100 P~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~ 179 (223)
T COG4619 100 PWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRY 179 (223)
T ss_pred chHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHH
Confidence 22 3356788887764 6788999999999 799999999999999999999999999999999988888
Q ss_pred HhcCCcEEEEEcCchhH-HhhccccceeeCceE
Q 006974 460 LRDRVGLAVVTTHYADL-SCLKDKDTRFENAAT 491 (623)
Q Consensus 460 l~~~~~~vii~TH~~~l-~~~~~~~~~i~~g~~ 491 (623)
.+++...++++|||.+- ...+++++.+..|+.
T Consensus 180 v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 180 VREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred hhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 88888999999999875 678899888888764
No 332
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.86 E-value=1.4e-21 Score=223.07 Aligned_cols=166 Identities=14% Similarity=0.141 Sum_probs=128.9
Q ss_pred CcEEEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhc
Q 006974 325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 381 (623)
Q Consensus 325 ~~l~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G 381 (623)
+.++++||+++|++ ..+ ++|+++.+| +.++|+||||||||||+|++ |+..+- .+.-
T Consensus 333 ~~I~~~~vsf~y~~~~~iL~~inl~i~~G-~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 411 (588)
T PRK13657 333 GAVEFDDVSFSYDNSRQGVEDVSFEAKPG-QTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNI 411 (588)
T ss_pred CeEEEEEEEEEeCCCCceecceeEEECCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 35899999999964 445 999999999 99999999999999999999 665431 1234
Q ss_pred eeecCCCCCCc--cHHH---------------HHHHHcCCchh-----------hhcccccccHHHH-HHHHHHHhcCCC
Q 006974 382 LYLPAKNHPRL--PWFD---------------LILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRE 432 (623)
Q Consensus 382 ~~vp~~~~~~l--~~~d---------------~i~~~ig~~~~-----------~~~~~stfS~g~~-rl~~~~~l~~~~ 432 (623)
+|+||+.. .+ ++.+ ..+...|+.+. +......||||++ |+++|++++.+|
T Consensus 412 ~~v~Q~~~-lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~ 490 (588)
T PRK13657 412 AVVFQDAG-LFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDP 490 (588)
T ss_pred EEEecCcc-cccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 67888752 11 1111 22333343322 2334467999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
+++||||||+++|+.....+.+.+.+ +. .++|+|++||+.+....+|+++.+.+|++...
T Consensus 491 ~iliLDEpts~LD~~t~~~i~~~l~~-~~-~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~ 550 (588)
T PRK13657 491 PILILDEATSALDVETEAKVKAALDE-LM-KGRTTFIIAHRLSTVRNADRILVFDNGRVVES 550 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHH-Hh-cCCEEEEEEecHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999886554 33 36899999999998888999999999987643
No 333
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.86 E-value=1.6e-21 Score=222.34 Aligned_cols=166 Identities=15% Similarity=0.170 Sum_probs=128.5
Q ss_pred CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh
Q 006974 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 380 (623)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~ 380 (623)
+.++++||+++|++ .++ ++|+++++| +.++|+||||||||||+|++ |+..+- .+.
T Consensus 340 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G-~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 418 (582)
T PRK11176 340 GDIEFRNVTFTYPGKEVPALRNINFKIPAG-KTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ 418 (582)
T ss_pred CeEEEEEEEEecCCCCCccccCceEEeCCC-CEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhh
Confidence 35899999999964 344 999999999 99999999999999999999 776541 123
Q ss_pred ceeecCCCCCCcc--H----------------HHHHHHHcCCchhhh-----------cccccccHHHH-HHHHHHHhcC
Q 006974 381 GLYLPAKNHPRLP--W----------------FDLILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVS 430 (623)
Q Consensus 381 G~~vp~~~~~~l~--~----------------~d~i~~~ig~~~~~~-----------~~~stfS~g~~-rl~~~~~l~~ 430 (623)
-.|+||+.. .++ + +...+...|+.+.+. ..-..||||++ |+++|++++.
T Consensus 419 i~~v~Q~~~-lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~ 497 (582)
T PRK11176 419 VALVSQNVH-LFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR 497 (582)
T ss_pred ceEEccCce-eecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence 357888752 111 1 112233334333222 22366999999 8999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
+|+++||||||+++|+.....+..++.+ +.+ ++|+|++||+.+....||+++.+++|++...
T Consensus 498 ~~~ililDEptsaLD~~t~~~i~~~l~~-~~~-~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~ 559 (582)
T PRK11176 498 DSPILILDEATSALDTESERAIQAALDE-LQK-NRTSLVIAHRLSTIEKADEILVVEDGEIVER 559 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHH-HhC-CCEEEEEecchHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999986654 433 6899999999998888999999999987643
No 334
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.2e-21 Score=208.93 Aligned_cols=167 Identities=16% Similarity=0.158 Sum_probs=135.2
Q ss_pred CCcEEEceeeeecCCcc-c--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh------h------------hhhhc
Q 006974 324 NSEMTVGSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS------L------------MSKAG 381 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~~~-v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~------~------------~a~~G 381 (623)
++.|+++||+++|+++. | +++|+++.| +.++|+|+|||||||+||++ .... + +.++.
T Consensus 349 ~~~I~F~dV~f~y~~k~~iL~gvsf~I~kG-ekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~I 427 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYGPKRKVLKGVSFTIPKG-EKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSI 427 (591)
T ss_pred CCcEEEEeeEEEeCCCCceecceeEEecCC-CEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhhe
Confidence 35699999999998766 6 999999999 99999999999999999999 3332 2 34566
Q ss_pred eeecCCCCCCcc--H------------HH---HHHHHcCCchhhh-----------cccccccHHHH-HHHHHHHhcCCC
Q 006974 382 LYLPAKNHPRLP--W------------FD---LILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVSRE 432 (623)
Q Consensus 382 ~~vp~~~~~~l~--~------------~d---~i~~~ig~~~~~~-----------~~~stfS~g~~-rl~~~~~l~~~~ 432 (623)
.+|||+. ..+. + ++ ++..+.|+.|.+. ..--.||||+| |++++++++.+|
T Consensus 428 g~VPQd~-~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda 506 (591)
T KOG0057|consen 428 GVVPQDS-VLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDA 506 (591)
T ss_pred eEeCCcc-cccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCC
Confidence 7999986 2221 1 11 2334445554433 34457999999 799999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
+++++||||+.||...-..+...+.. ...+.|+|++-|++.+..-+|++..++||++...
T Consensus 507 ~Il~~DEaTS~LD~~TE~~i~~~i~~--~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~ 566 (591)
T KOG0057|consen 507 PILLLDEATSALDSETEREILDMIMD--VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEY 566 (591)
T ss_pred CeEEecCcccccchhhHHHHHHHHHH--hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEe
Confidence 99999999999999999999997777 3447899999999999999999999999998754
No 335
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.86 E-value=1.2e-21 Score=228.53 Aligned_cols=164 Identities=16% Similarity=0.184 Sum_probs=129.0
Q ss_pred CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh
Q 006974 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 380 (623)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~ 380 (623)
+.++++||+++|++ +.+ ++||++++| +.++|+||||||||||+|++ |+..+- .+.
T Consensus 476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~G-e~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 554 (710)
T TIGR03796 476 GYVELRNITFGYSPLEPPLIENFSLTLQPG-QRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANS 554 (710)
T ss_pred CeEEEEEEEEecCCCCCCcccceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhh
Confidence 46899999999974 344 999999999 99999999999999999999 665431 223
Q ss_pred ceeecCCCCCCc--cH---------------HHHHHHHcCCchhh-----------hcccccccHHHH-HHHHHHHhcCC
Q 006974 381 GLYLPAKNHPRL--PW---------------FDLILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSR 431 (623)
Q Consensus 381 G~~vp~~~~~~l--~~---------------~d~i~~~ig~~~~~-----------~~~~stfS~g~~-rl~~~~~l~~~ 431 (623)
.+|+||+.. .+ ++ +.+++...|+.+.+ ...-..|||||+ |+++|++++.+
T Consensus 555 i~~v~Q~~~-lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~ 633 (710)
T TIGR03796 555 VAMVDQDIF-LFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRN 633 (710)
T ss_pred eeEEecCCh-hhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhC
Confidence 357888752 11 11 11233333443332 334577999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
|+++||||||++||+.....+.+.+.+ .++|+|++||..+....||+++.+++|++...
T Consensus 634 p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~ 692 (710)
T TIGR03796 634 PSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQR 692 (710)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEe
Confidence 999999999999999999998886543 47899999999998788999999999998754
No 336
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=1.9e-21 Score=179.55 Aligned_cols=166 Identities=16% Similarity=0.211 Sum_probs=136.0
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhh--------------------------h
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLM--------------------------S 378 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~--------------------------a 378 (623)
|.++++++.||...+ +++++.+.| +.++++||+|+|||||+|++.|+..- .
T Consensus 3 irv~~in~~yg~~q~lfdi~l~~~~g-etlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr 81 (242)
T COG4161 3 IQLNGINCFYGAHQALFDITLDCPEG-ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR 81 (242)
T ss_pred eEEcccccccccchheeeeeecCCCC-CEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH
Confidence 678999999998766 899999999 99999999999999999999766421 1
Q ss_pred hhceeecCCCC--CCccHHH----------------------HHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCc
Q 006974 379 KAGLYLPAKNH--PRLPWFD----------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES 433 (623)
Q Consensus 379 ~~G~~vp~~~~--~~l~~~d----------------------~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~ 433 (623)
+....|++... +.+.+.+ .++.++.+.+..++.+-.||||++ |++++++++++|.
T Consensus 82 ~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpq 161 (242)
T COG4161 82 RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQ 161 (242)
T ss_pred HhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCc
Confidence 11123333321 1122222 356778888899999999999998 8999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHH-hhccccceeeCceEEEe
Q 006974 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (623)
Q Consensus 434 LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~-~~~~~~~~i~~g~~~~~ 494 (623)
++|+||||+.|||+-...+.. |++.|.+.|.|-+++||..+++ ..+.+++.+++|+++..
T Consensus 162 vllfdeptaaldpeitaqvv~-iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~ 222 (242)
T COG4161 162 VLLFDEPTAALDPEITAQIVS-IIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred EEeecCcccccCHHHHHHHHH-HHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEee
Confidence 999999999999999999998 8888999999999999999865 68899999999998754
No 337
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.86 E-value=1.9e-21 Score=221.17 Aligned_cols=166 Identities=13% Similarity=0.138 Sum_probs=129.5
Q ss_pred CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh
Q 006974 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 380 (623)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~ 380 (623)
+.++++||+++|++ .++ ++||++++| +.++|+||||+|||||+|++ |+..+- .+.
T Consensus 329 ~~i~~~~v~f~y~~~~~~il~~inl~i~~G-~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~ 407 (571)
T TIGR02203 329 GDVEFRNVTFRYPGRDRPALDSISLVIEPG-ETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQ 407 (571)
T ss_pred CeEEEEEEEEEcCCCCCccccCeeEEecCC-CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhh
Confidence 45899999999964 344 999999999 99999999999999999999 776431 123
Q ss_pred ceeecCCCCC---------------Ccc--HHHHHHHHcCCchhhh-----------cccccccHHHH-HHHHHHHhcCC
Q 006974 381 GLYLPAKNHP---------------RLP--WFDLILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVSR 431 (623)
Q Consensus 381 G~~vp~~~~~---------------~l~--~~d~i~~~ig~~~~~~-----------~~~stfS~g~~-rl~~~~~l~~~ 431 (623)
-+|+||++.. ..+ -+.+++...|+.+.+. ..-..||||++ |+++|++++.+
T Consensus 408 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~ 487 (571)
T TIGR02203 408 VALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKD 487 (571)
T ss_pred ceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 4588887520 010 1223444555544332 23357999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEE
Q 006974 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (623)
Q Consensus 432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~ 493 (623)
|+++||||||+++|+.....+...+.+ +. .++|+|++||+..+...||++..+++|++..
T Consensus 488 ~~illLDEpts~LD~~~~~~i~~~L~~-~~-~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~ 547 (571)
T TIGR02203 488 APILILDEATSALDNESERLVQAALER-LM-QGRTTLVIAHRLSTIEKADRIVVMDDGRIVE 547 (571)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHH-Hh-CCCEEEEEehhhHHHHhCCEEEEEeCCEEEe
Confidence 999999999999999999999886554 33 3689999999999889999999999998764
No 338
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.86 E-value=2.1e-21 Score=225.71 Aligned_cols=166 Identities=18% Similarity=0.180 Sum_probs=129.2
Q ss_pred CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh
Q 006974 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 380 (623)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~ 380 (623)
+.++++||+++|++ .++ ++||++++| +.++|+||||||||||+|++ |+..+- .+.
T Consensus 462 ~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G-~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~ 540 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQETPALDNVSLTIRPG-EKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRN 540 (694)
T ss_pred ceEEEEEEEEEeCCCCccceeeeeEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhc
Confidence 46999999999964 334 999999999 99999999999999999999 665431 123
Q ss_pred ceeecCCCCCCc--cH---------------HHHHHHHcCCchhh-----------hcccccccHHHH-HHHHHHHhcCC
Q 006974 381 GLYLPAKNHPRL--PW---------------FDLILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSR 431 (623)
Q Consensus 381 G~~vp~~~~~~l--~~---------------~d~i~~~ig~~~~~-----------~~~~stfS~g~~-rl~~~~~l~~~ 431 (623)
..||||+.. .+ ++ +.+.+...|+.+.+ ...-..||||++ |+++|++++.+
T Consensus 541 i~~v~Q~~~-lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~ 619 (694)
T TIGR03375 541 IGYVPQDPR-LFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRD 619 (694)
T ss_pred cEEECCChh-hhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 357777641 11 11 12233444444433 234468999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
|+++||||||+++|+.....+.+++.+ +.+ ++|+|++||+.+....||+++.+++|++...
T Consensus 620 p~iliLDE~Ts~LD~~te~~i~~~l~~-~~~-~~T~iiItHrl~~~~~~D~iivl~~G~i~e~ 680 (694)
T TIGR03375 620 PPILLLDEPTSAMDNRSEERFKDRLKR-WLA-GKTLVLVTHRTSLLDLVDRIIVMDNGRIVAD 680 (694)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHH-HhC-CCEEEEEecCHHHHHhCCEEEEEeCCEEEee
Confidence 999999999999999999999996554 433 6899999999998889999999999988643
No 339
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.86 E-value=2.3e-21 Score=221.01 Aligned_cols=167 Identities=13% Similarity=0.113 Sum_probs=127.6
Q ss_pred CcEEEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhc
Q 006974 325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 381 (623)
Q Consensus 325 ~~l~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G 381 (623)
+.++++||+++|++ ..+ ++||++++| +.++|+||||||||||++++ |+..+. .+.-
T Consensus 333 ~~i~~~~v~~~y~~~~~~l~~i~~~i~~G-~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 411 (585)
T TIGR01192 333 GAVEFRHITFEFANSSQGVFDVSFEAKAG-QTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSI 411 (585)
T ss_pred CeEEEEEEEEECCCCCccccceeEEEcCC-CEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 46899999999975 334 999999999 99999999999999999999 665431 1223
Q ss_pred eeecCCCCC-CccHHHHH---------------HHHcCC-----------chhhhcccccccHHHH-HHHHHHHhcCCCc
Q 006974 382 LYLPAKNHP-RLPWFDLI---------------LADIGD-----------HQSLEQNLSTFSGHIS-RIVDILELVSRES 433 (623)
Q Consensus 382 ~~vp~~~~~-~l~~~d~i---------------~~~ig~-----------~~~~~~~~stfS~g~~-rl~~~~~l~~~~~ 433 (623)
.|+|++... .-++.+++ +...+. ...+......|||||+ |+++|++++.+|+
T Consensus 412 ~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ 491 (585)
T TIGR01192 412 ATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAP 491 (585)
T ss_pred EEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 477776420 01111211 222222 2234455678999999 8999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 434 LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
++||||||+|+|+.....+...+. .+. .+.|+|++||+.+....||+++.+.+|++...
T Consensus 492 ililDEpts~LD~~~~~~i~~~l~-~~~-~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~ 550 (585)
T TIGR01192 492 ILVLDEATSALDVETEARVKNAID-ALR-KNRTTFIIAHRLSTVRNADLVLFLDQGRLIEK 550 (585)
T ss_pred EEEEECCccCCCHHHHHHHHHHHH-HHh-CCCEEEEEEcChHHHHcCCEEEEEECCEEEEE
Confidence 999999999999999999988554 444 37899999999987678999999999988643
No 340
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.86 E-value=1.9e-21 Score=192.22 Aligned_cols=144 Identities=20% Similarity=0.228 Sum_probs=121.5
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCC------------------CccH---------
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP------------------RLPW--------- 394 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~------------------~l~~--------- 394 (623)
++||++.+| +.++|+|+||||||||||+| +|.+.|..|.. .++.
T Consensus 45 disf~i~~G-e~vGiiG~NGaGKSTLlkli--------aGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~ 115 (249)
T COG1134 45 DISFEIYKG-ERVGIIGHNGAGKSTLLKLI--------AGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGL 115 (249)
T ss_pred CceEEEeCC-CEEEEECCCCCcHHHHHHHH--------hCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHH
Confidence 999999999 99999999999999999999 77777776621 1121
Q ss_pred ------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 006974 395 ------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR 461 (623)
Q Consensus 395 ------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~ 461 (623)
++.|.+--.+++.++.++.++|.||+ |++++.+...+|+++||||..+--|+.=...-.. .++.+.
T Consensus 116 ~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~-rl~e~~ 194 (249)
T COG1134 116 ILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLE-RLNELV 194 (249)
T ss_pred HhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHH-HHHHHH
Confidence 23344444567899999999999999 9999999999999999999999999988887666 455565
Q ss_pred cCCcEEEEEcCchh-HHhhccccceeeCceEEEec
Q 006974 462 DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (623)
Q Consensus 462 ~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~~ 495 (623)
+++.|+|++||+++ +..+|++...+++|.+.+..
T Consensus 195 ~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G 229 (249)
T COG1134 195 EKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEG 229 (249)
T ss_pred HcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcC
Confidence 66799999999988 88999999999999998763
No 341
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.86 E-value=2.3e-21 Score=221.45 Aligned_cols=164 Identities=14% Similarity=0.144 Sum_probs=126.2
Q ss_pred CcEEEceeeeec-CCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhc
Q 006974 325 SEMTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 381 (623)
Q Consensus 325 ~~l~~~~l~~~y-~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G 381 (623)
+.++++||++.| +++++ ++||++++| +.++|+||||||||||++++ |+. +- .+..
T Consensus 348 ~~i~~~~vsf~~~~~~~vL~~i~l~i~~G-~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i 425 (588)
T PRK11174 348 VTIEAEDLEILSPDGKTLAGPLNFTLPAG-QRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHL 425 (588)
T ss_pred ceEEEEeeEEeccCCCeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhhe
Confidence 358999999755 45555 999999999 99999999999999999999 665 31 1233
Q ss_pred eeecCCCCCCc--cHH---------------HHHHHHcCCch-----------hhhcccccccHHHH-HHHHHHHhcCCC
Q 006974 382 LYLPAKNHPRL--PWF---------------DLILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSRE 432 (623)
Q Consensus 382 ~~vp~~~~~~l--~~~---------------d~i~~~ig~~~-----------~~~~~~stfS~g~~-rl~~~~~l~~~~ 432 (623)
.||||+.. -+ ++. .+.+...|+.+ .+...-..||||++ |+++|++++.+|
T Consensus 426 ~~v~Q~~~-LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~ 504 (588)
T PRK11174 426 SWVGQNPQ-LPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPC 504 (588)
T ss_pred EEecCCCc-CCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCC
Confidence 57777752 11 111 12223333322 33344567999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEE
Q 006974 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (623)
Q Consensus 433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~ 493 (623)
+++||||||+++|+.....+..++.+ +. ++.|+|++||.++....||+++.+++|++..
T Consensus 505 ~IliLDE~TSaLD~~te~~i~~~l~~-~~-~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e 563 (588)
T PRK11174 505 QLLLLDEPTASLDAHSEQLVMQALNA-AS-RRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQ 563 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHH-Hh-CCCEEEEEecChHHHHhCCEEEEEeCCeEee
Confidence 99999999999999999999986554 43 3689999999999878899999999998764
No 342
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.86 E-value=3.6e-21 Score=221.58 Aligned_cols=167 Identities=20% Similarity=0.273 Sum_probs=135.9
Q ss_pred cEEEceeeeecCC----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------
Q 006974 326 EMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (623)
Q Consensus 326 ~l~~~~l~~~y~~----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------- 377 (623)
.++++|+++.|++ ..+ ++||++.+| ++++|+||||+|||||+|++ |+..+-
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAG-EMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence 5789999999953 233 999999999 99999999999999999999 665321
Q ss_pred --hhhceeecCCCCC--CccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCC
Q 006974 378 --SKAGLYLPAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (623)
Q Consensus 378 --a~~G~~vp~~~~~--~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~ 431 (623)
.+...|+|+.... .++.. ..++..+|+.+..++.+.+||+||+ |+.++++++.+
T Consensus 83 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~ 162 (648)
T PRK10535 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNG 162 (648)
T ss_pred HHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 1223577776421 11212 2245567777788899999999999 79999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
|+++|||||++|||+.....+.. +++.+++.+.++|++||+.++...||+.+.+.+|++...
T Consensus 163 P~lLllDEP~~gLD~~s~~~l~~-ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~ 224 (648)
T PRK10535 163 GQVILADEPTGALDSHSGEEVMA-ILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRN 224 (648)
T ss_pred CCEEEEECCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEee
Confidence 99999999999999999999999 556676678899999999997778999999999998755
No 343
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2e-21 Score=184.28 Aligned_cols=137 Identities=22% Similarity=0.273 Sum_probs=110.0
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeecCCCC--------------
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNH-------------- 389 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp~~~~-------------- 389 (623)
++.+|++...+..++ +++|++.+| +++.|+||||+|||||||++ ||.. |..|.
T Consensus 3 L~a~~L~~~R~e~~lf~~L~f~l~~G-e~~~i~G~NG~GKTtLLRilaGLl~---------p~~G~v~~~~~~i~~~~~~ 72 (209)
T COG4133 3 LEAENLSCERGERTLFSDLSFTLNAG-EALQITGPNGAGKTTLLRILAGLLR---------PDAGEVYWQGEPIQNVRES 72 (209)
T ss_pred chhhhhhhccCcceeecceeEEEcCC-CEEEEECCCCCcHHHHHHHHHcccC---------CCCCeEEecCCCCccchhh
Confidence 345677777776666 999999999 99999999999999999999 5544 33321
Q ss_pred ---------------CCccHH------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974 390 ---------------PRLPWF------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (623)
Q Consensus 390 ---------------~~l~~~------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll 435 (623)
..++.+ .+.++.+|+.+..+.++..||.|++ |+++++-.+..++|.
T Consensus 73 ~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLW 152 (209)
T COG4133 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLW 152 (209)
T ss_pred HHHHHHHhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCce
Confidence 112222 2346778888888999999999999 789998899999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCch
Q 006974 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (623)
Q Consensus 436 LLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~ 474 (623)
|||||++++|......+.. ++..-..+|+.||++||..
T Consensus 153 iLDEP~taLDk~g~a~l~~-l~~~H~~~GGiVllttHq~ 190 (209)
T COG4133 153 ILDEPFTALDKEGVALLTA-LMAAHAAQGGIVLLTTHQP 190 (209)
T ss_pred eecCcccccCHHHHHHHHH-HHHHHhcCCCEEEEecCCc
Confidence 9999999999988888877 5555566788999999984
No 344
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.86 E-value=3.5e-21 Score=220.05 Aligned_cols=166 Identities=16% Similarity=0.152 Sum_probs=130.1
Q ss_pred CcEEEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhc
Q 006974 325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 381 (623)
Q Consensus 325 ~~l~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G 381 (623)
+.++++||+++|++ ..+ ++||++++| +.++|+||||||||||+|++ |+..+- .+.-
T Consensus 339 ~~i~~~~v~f~y~~~~~il~~i~l~i~~G-e~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i 417 (592)
T PRK10790 339 GRIDIDNVSFAYRDDNLVLQNINLSVPSR-GFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGV 417 (592)
T ss_pred CeEEEEEEEEEeCCCCceeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 45899999999964 344 999999999 99999999999999999999 665431 2234
Q ss_pred eeecCCCCCCcc--H--------------HHHHHHHcCCchhhh-----------cccccccHHHH-HHHHHHHhcCCCc
Q 006974 382 LYLPAKNHPRLP--W--------------FDLILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVSRES 433 (623)
Q Consensus 382 ~~vp~~~~~~l~--~--------------~d~i~~~ig~~~~~~-----------~~~stfS~g~~-rl~~~~~l~~~~~ 433 (623)
+|+||+.. .++ + +.+++...|+.+.++ ..-..||||++ |+++|++++.+|+
T Consensus 418 ~~v~Q~~~-lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~ 496 (592)
T PRK10790 418 AMVQQDPV-VLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQ 496 (592)
T ss_pred EEEccCCc-cccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 57787752 111 1 223344555544333 33457999999 8999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 434 LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
++||||||+++|+.....+.+.+.+ +.+ ++|+|++||+.+....||+++.+++|++...
T Consensus 497 illlDEpts~LD~~t~~~i~~~l~~-~~~-~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~ 555 (592)
T PRK10790 497 ILILDEATANIDSGTEQAIQQALAA-VRE-HTTLVVIAHRLSTIVEADTILVLHRGQAVEQ 555 (592)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHH-HhC-CCEEEEEecchHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999886554 443 5899999999998778999999999998754
No 345
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.86 E-value=4.6e-21 Score=217.98 Aligned_cols=166 Identities=11% Similarity=0.122 Sum_probs=127.3
Q ss_pred CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh
Q 006974 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 380 (623)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~ 380 (623)
+.++++|++++|++ ..+ ++||++++| +.++|+||||||||||++++ |+..+- .+.
T Consensus 312 ~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G-~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 390 (569)
T PRK10789 312 GELDVNIRQFTYPQTDHPALENVNFTLKPG-QMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSR 390 (569)
T ss_pred CcEEEEEEEEECCCCCCccccCeeEEECCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhh
Confidence 35889999999964 334 999999999 99999999999999999999 665431 122
Q ss_pred ceeecCCCCCCc--cHH---------------HHHHHHcCCchhh-----------hcccccccHHHH-HHHHHHHhcCC
Q 006974 381 GLYLPAKNHPRL--PWF---------------DLILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSR 431 (623)
Q Consensus 381 G~~vp~~~~~~l--~~~---------------d~i~~~ig~~~~~-----------~~~~stfS~g~~-rl~~~~~l~~~ 431 (623)
..|+|++.. .+ ++. ...+...+..+.+ ......||||++ |+++|++++.+
T Consensus 391 i~~v~q~~~-lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~ 469 (569)
T PRK10789 391 LAVVSQTPF-LFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLN 469 (569)
T ss_pred eEEEccCCe-eccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 346777641 11 111 2223333433322 234567999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
|+++||||||+|+|+.....+...+.+ +. .+.|+|++||+.+....+|++..+.+|++...
T Consensus 470 ~~illlDEpts~LD~~~~~~i~~~l~~-~~-~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~ 530 (569)
T PRK10789 470 AEILILDDALSAVDGRTEHQILHNLRQ-WG-EGRTVIISAHRLSALTEASEILVMQHGHIAQR 530 (569)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHH-Hh-CCCEEEEEecchhHHHcCCEEEEEeCCEEEEe
Confidence 999999999999999999999986544 43 47899999999987778999999999988654
No 346
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.85 E-value=5.1e-21 Score=223.01 Aligned_cols=166 Identities=17% Similarity=0.185 Sum_probs=129.5
Q ss_pred CcEEEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhhhc
Q 006974 325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG 381 (623)
Q Consensus 325 ~~l~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~~G 381 (623)
+.++++||+++|++ +.+ ++||++++| +.++|+||||||||||+|++ |+..+ +.+.-
T Consensus 472 ~~I~~~~vsf~y~~~~~iL~~isl~i~~G-~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 550 (708)
T TIGR01193 472 GDIVINDVSYSYGYGSNILSDISLTIKMN-SKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFI 550 (708)
T ss_pred CcEEEEEEEEEcCCCCcceeceeEEECCC-CEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHhe
Confidence 46899999999973 444 999999999 99999999999999999999 66543 11233
Q ss_pred eeecCCCCC---------C------cc--HHHHHHHHcCCchh-----------hhcccccccHHHH-HHHHHHHhcCCC
Q 006974 382 LYLPAKNHP---------R------LP--WFDLILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRE 432 (623)
Q Consensus 382 ~~vp~~~~~---------~------l~--~~d~i~~~ig~~~~-----------~~~~~stfS~g~~-rl~~~~~l~~~~ 432 (623)
.|+||+... . .+ -+.+.+...|..+. +......||||++ |+++|++++.+|
T Consensus 551 ~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p 630 (708)
T TIGR01193 551 NYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDS 630 (708)
T ss_pred EEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCC
Confidence 578887420 0 00 11223333344332 2344578999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
+++||||||+++|+.....+...+.+ + +++|+|++||+.+....||++..+++|++...
T Consensus 631 ~iliLDE~Ts~LD~~te~~i~~~L~~-~--~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~ 689 (708)
T TIGR01193 631 KVLILDESTSNLDTITEKKIVNNLLN-L--QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQ 689 (708)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHH-h--cCCEEEEEecchHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999886654 3 36899999999998888999999999998654
No 347
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.85 E-value=8.9e-21 Score=190.97 Aligned_cols=150 Identities=25% Similarity=0.316 Sum_probs=109.4
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHH-HHH---hhhhhh--------hhh-ceeec--------------CCC----CC
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASM-KTL---GLASLM--------SKA-GLYLP--------------AKN----HP 390 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlL-k~i---gl~~~~--------a~~-G~~vp--------------~~~----~~ 390 (623)
++||++.+| ++++|+||||||||||+ .++ |-+.+. ... +.+.| +.. ..
T Consensus 13 ~vsl~i~~G-e~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (226)
T cd03270 13 NVDVDIPRN-KLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQKTTSRNP 91 (226)
T ss_pred cceeecCCC-cEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCCCCCCCC
Confidence 999999999 99999999999999996 333 111100 000 01111 111 01
Q ss_pred Ccc---------HH------------HHHHHHcCCch-hhhcccccccHHHH-HHHHHHHhcCCC--cEEEEeCCCCCCC
Q 006974 391 RLP---------WF------------DLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRE--SLVLIDEIGSGTD 445 (623)
Q Consensus 391 ~l~---------~~------------d~i~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~~~--~LlLLDEp~~glD 445 (623)
... ++ ...+..+|+.+ ..++.+++||+||+ |++++++++.+| +++||||||+|+|
T Consensus 92 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD 171 (226)
T cd03270 92 RSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLH 171 (226)
T ss_pred CccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCC
Confidence 101 01 12344556655 47889999999999 799999999987 5999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcccccee------eCceEEE
Q 006974 446 PSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF------ENAATEF 493 (623)
Q Consensus 446 ~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i------~~g~~~~ 493 (623)
+.....+... +..+.+.|.|+|++||+++...+||++..+ .+|+++.
T Consensus 172 ~~~~~~l~~~-l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~ 224 (226)
T cd03270 172 PRDNDRLIET-LKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVA 224 (226)
T ss_pred HHHHHHHHHH-HHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEe
Confidence 9999999994 555666788999999999877799999999 7777654
No 348
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.85 E-value=5.6e-21 Score=222.48 Aligned_cols=164 Identities=16% Similarity=0.146 Sum_probs=126.5
Q ss_pred CcEEEceeeeecCC---ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hh
Q 006974 325 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SK 379 (623)
Q Consensus 325 ~~l~~~~l~~~y~~---~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~ 379 (623)
+.++++||+++|++ .++ ++||++++| +.++|+||||||||||+|++ |+..+. .+
T Consensus 477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~G-e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 555 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPG-EVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555 (711)
T ss_pred CeEEEEEEEEECCCCCCCccccCceEEEcCC-CEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHh
Confidence 46999999999964 345 999999999 99999999999999999999 665431 22
Q ss_pred hceeecCCCCCCc--cH---------------HHHHHHHcCCchhh-----------hcccccccHHHH-HHHHHHHhcC
Q 006974 380 AGLYLPAKNHPRL--PW---------------FDLILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVS 430 (623)
Q Consensus 380 ~G~~vp~~~~~~l--~~---------------~d~i~~~ig~~~~~-----------~~~~stfS~g~~-rl~~~~~l~~ 430 (623)
...|+||+.. .+ ++ +.+++...|..+.+ ...-..|||||+ |+++|++++.
T Consensus 556 ~i~~v~Q~~~-lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~ 634 (711)
T TIGR00958 556 QVALVGQEPV-LFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVR 634 (711)
T ss_pred hceEEecCcc-ccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhc
Confidence 3457888752 11 11 22333444443332 233467999999 8999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
+|+++||||||+++|+.....+.+ . ....+.|+|++||..+....+|+++.+++|++...
T Consensus 635 ~p~ILILDEpTSaLD~~te~~i~~-~---~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~ 694 (711)
T TIGR00958 635 KPRVLILDEATSALDAECEQLLQE-S---RSRASRTVLLIAHRLSTVERADQILVLKKGSVVEM 694 (711)
T ss_pred CCCEEEEEccccccCHHHHHHHHH-h---hccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999988777766 1 22347899999999998888999999999998654
No 349
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.85 E-value=5.6e-21 Score=217.66 Aligned_cols=166 Identities=15% Similarity=0.189 Sum_probs=128.3
Q ss_pred CcEEEceeeeecCC---ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hh
Q 006974 325 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SK 379 (623)
Q Consensus 325 ~~l~~~~l~~~y~~---~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~ 379 (623)
+.++++||+++|++ +.+ +++|++++| +.++|+||||||||||+|++ |+..+- .+
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~G-e~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 414 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPG-ETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRA 414 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccceeEEecCC-CEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHH
Confidence 35899999999963 334 999999999 99999999999999999999 666431 12
Q ss_pred hceeecCCCCCCc--cH---------------HHHHHHHcCCch-----------hhhcccccccHHHH-HHHHHHHhcC
Q 006974 380 AGLYLPAKNHPRL--PW---------------FDLILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVS 430 (623)
Q Consensus 380 ~G~~vp~~~~~~l--~~---------------~d~i~~~ig~~~-----------~~~~~~stfS~g~~-rl~~~~~l~~ 430 (623)
.-.|+||+.. .+ ++ +...+...|..+ .+......||||++ |++++++++.
T Consensus 415 ~i~~~~Q~~~-lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~ 493 (576)
T TIGR02204 415 RMALVPQDPV-LFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILK 493 (576)
T ss_pred hceEEccCCc-cccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence 2357888752 11 11 122233333332 23345578999999 8999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
+|+++||||||+++|+.....+.+.+.+ +. .+.|+|++||+.+....+|++..+.+|++...
T Consensus 494 ~~~ililDEpts~lD~~~~~~i~~~l~~-~~-~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~ 555 (576)
T TIGR02204 494 DAPILLLDEATSALDAESEQLVQQALET-LM-KGRTTLIIAHRLATVLKADRIVVMDQGRIVAQ 555 (576)
T ss_pred CCCeEEEeCcccccCHHHHHHHHHHHHH-Hh-CCCEEEEEecchHHHHhCCEEEEEECCEEEee
Confidence 9999999999999999999988885544 43 36899999999998888999999999987654
No 350
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=5.9e-21 Score=192.13 Aligned_cols=159 Identities=18% Similarity=0.123 Sum_probs=130.5
Q ss_pred cEEEceeeeecCCc----------cc-cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCc--
Q 006974 326 EMTVGSLSKGISDF----------PV-PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRL-- 392 (623)
Q Consensus 326 ~l~~~~l~~~y~~~----------~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l-- 392 (623)
.++++||++.|... .+ +|||++.+| ++++|+|.+||||||+-|++ .|+.-|..|...+
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~g-e~~glVGESG~GKSTlgr~i--------~~L~~pt~G~i~f~g 74 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEG-ETLGLVGESGCGKSTLGRLI--------LGLEEPTSGEILFEG 74 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCC-CEEEEEecCCCCHHHHHHHH--------HcCcCCCCceEEEcC
Confidence 46788888888421 22 899999999 99999999999999999999 5555555542211
Q ss_pred ------------cHHHHHHHHcCCch-hhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006974 393 ------------PWFDLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQ 458 (623)
Q Consensus 393 ------------~~~d~i~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~ 458 (623)
..+..++..+|+.. .+++.++.||||++ |+.+|++++.+|+++++|||++.||...++.+.. ++.
T Consensus 75 ~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIln-LL~ 153 (268)
T COG4608 75 KDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILN-LLK 153 (268)
T ss_pred cchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHH-HHH
Confidence 12445678888764 78999999999999 8999999999999999999999999999999999 555
Q ss_pred HHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 459 YLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 459 ~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
.+.+ .|.+.+|+|||+. ...++|++.++..|+++..
T Consensus 154 dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~ 191 (268)
T COG4608 154 DLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEI 191 (268)
T ss_pred HHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEe
Confidence 5654 5889999999998 4568999999999987643
No 351
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.85 E-value=7.2e-21 Score=221.30 Aligned_cols=166 Identities=17% Similarity=0.162 Sum_probs=129.1
Q ss_pred CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh
Q 006974 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 380 (623)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~ 380 (623)
+.++++||+++|++ +.+ ++||++++| +.++|+||||||||||+|++ |+..+- .+.
T Consensus 454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G-~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~ 532 (694)
T TIGR01846 454 GAITFENIRFRYAPDSPEVLSNLNLDIKPG-EFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQ 532 (694)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHh
Confidence 46899999999953 334 999999999 99999999999999999999 665431 123
Q ss_pred ceeecCCCCCCcc--H---------------HHHHHHHcCCchh-----------hhcccccccHHHH-HHHHHHHhcCC
Q 006974 381 GLYLPAKNHPRLP--W---------------FDLILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSR 431 (623)
Q Consensus 381 G~~vp~~~~~~l~--~---------------~d~i~~~ig~~~~-----------~~~~~stfS~g~~-rl~~~~~l~~~ 431 (623)
..|+|++.. .++ + +.+.+...|..+. +......||||++ |++++++++.+
T Consensus 533 i~~v~q~~~-lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~ 611 (694)
T TIGR01846 533 MGVVLQENV-LFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGN 611 (694)
T ss_pred CeEEccCCe-ehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhC
Confidence 457777641 111 1 1222333343332 3345678999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
|+++||||||+++|+.....+.+.+.+ +. .+.|+|++||+.+....||++..+.+|++...
T Consensus 612 ~~ililDEpts~LD~~~~~~i~~~l~~-~~-~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~ 672 (694)
T TIGR01846 612 PRILIFDEATSALDYESEALIMRNMRE-IC-RGRTVIIIAHRLSTVRACDRIIVLEKGQIAES 672 (694)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHH-Hh-CCCEEEEEeCChHHHHhCCEEEEEeCCEEEEe
Confidence 999999999999999999999996655 33 47899999999987777999999999998754
No 352
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.85 E-value=8.2e-21 Score=218.92 Aligned_cols=158 Identities=15% Similarity=0.160 Sum_probs=123.0
Q ss_pred CcEEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--------hhceeecCCCCCC-
Q 006974 325 SEMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNHPR- 391 (623)
Q Consensus 325 ~~l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--------~~G~~vp~~~~~~- 391 (623)
+.++++||++.|+ +..+ ++||++.+| ++++|+||||||||||+|++ |+..+-. ....|+|++....
T Consensus 450 ~~i~~~nv~~~~~~~~~il~~isl~i~~G-e~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~ 528 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDVLIESLSFEVPSG-NHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTL 528 (659)
T ss_pred CeEEEEeeEEECCCCCeeeecceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCC
Confidence 4699999999995 4344 999999999 99999999999999999999 6654321 1234778774100
Q ss_pred ccH----------------------HHHHHHHcCCchhhhcc---------cccccHHHH-HHHHHHHhcCCCcEEEEeC
Q 006974 392 LPW----------------------FDLILADIGDHQSLEQN---------LSTFSGHIS-RIVDILELVSRESLVLIDE 439 (623)
Q Consensus 392 l~~----------------------~d~i~~~ig~~~~~~~~---------~stfS~g~~-rl~~~~~l~~~~~LlLLDE 439 (623)
-++ +.+++..+|+.+.++++ ..+|||||+ |+++|++++.+|+++||||
T Consensus 529 ~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDE 608 (659)
T TIGR00954 529 GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDE 608 (659)
T ss_pred cCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 011 22345556666555543 279999999 8999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceee
Q 006974 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 487 (623)
Q Consensus 440 p~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~ 487 (623)
||+|+|+.....+.+.+.+ .+.|+|++||+.++...||++..+.
T Consensus 609 pts~LD~~~~~~l~~~l~~----~~~tvI~isH~~~~~~~~d~il~l~ 652 (659)
T TIGR00954 609 CTSAVSVDVEGYMYRLCRE----FGITLFSVSHRKSLWKYHEYLLYMD 652 (659)
T ss_pred CccCCCHHHHHHHHHHHHH----cCCEEEEEeCchHHHHhCCEEEEEe
Confidence 9999999998888774433 4889999999999888899887774
No 353
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=9.8e-21 Score=206.62 Aligned_cols=165 Identities=18% Similarity=0.231 Sum_probs=129.2
Q ss_pred cEEEceeeeecCCc-cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhhhce
Q 006974 326 EMTVGSLSKGISDF-PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGL 382 (623)
Q Consensus 326 ~l~~~~l~~~y~~~-~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~~G~ 382 (623)
.++.+|+++.|++. ++ ++||++++| +.++|+||||||||||++.+ |+..+ ..+..+
T Consensus 320 ei~~~~l~~~y~~g~~~l~~l~~t~~~g-~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~ 398 (559)
T COG4988 320 EISLENLSFRYPDGKPALSDLNLTIKAG-QLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS 398 (559)
T ss_pred eeeecceEEecCCCCcccCCceeEecCC-cEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHee
Confidence 45566999999764 43 999999999 99999999999999999999 66652 113345
Q ss_pred eecCCCCCCcc--H---------------HHHHHHHcCCch----------hhhcccccccHHHH-HHHHHHHhcCCCcE
Q 006974 383 YLPAKNHPRLP--W---------------FDLILADIGDHQ----------SLEQNLSTFSGHIS-RIVDILELVSRESL 434 (623)
Q Consensus 383 ~vp~~~~~~l~--~---------------~d~i~~~ig~~~----------~~~~~~stfS~g~~-rl~~~~~l~~~~~L 434 (623)
+||+++. -++ . +.+++...|+.+ .+..+-+.+|||++ |+++++++..++++
T Consensus 399 ~v~Q~p~-lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l 477 (559)
T COG4988 399 WVSQNPY-LFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASL 477 (559)
T ss_pred eeCCCCc-cccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCE
Confidence 7777752 111 1 223344444333 34445667999999 89999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 435 lLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
+|+||||+|+|.++...+.+++.+ +.+ +.|+|++||......-+|+++++++|++...
T Consensus 478 ~llDEpTA~LD~etE~~i~~~l~~-l~~-~ktvl~itHrl~~~~~~D~I~vld~G~l~~~ 535 (559)
T COG4988 478 LLLDEPTAHLDAETEQIILQALQE-LAK-QKTVLVITHRLEDAADADRIVVLDNGRLVEQ 535 (559)
T ss_pred EEecCCccCCCHhHHHHHHHHHHH-HHh-CCeEEEEEcChHHHhcCCEEEEecCCceecc
Confidence 999999999999999999996555 454 3799999999998899999999999998754
No 354
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.84 E-value=3e-21 Score=183.66 Aligned_cols=165 Identities=22% Similarity=0.264 Sum_probs=130.0
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh--------------------hhhhce
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--------------------MSKAGL 382 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~--------------------~a~~G~ 382 (623)
.++++||+.+||+-.. ++||++.+| +.-+|+||||+||||+|-.| |...+ .|+.|.
T Consensus 5 iL~~~~vsVsF~GF~Aln~ls~~v~~G-elr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GI 83 (249)
T COG4674 5 ILYLDGVSVSFGGFKALNDLSFSVDPG-ELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGI 83 (249)
T ss_pred eEEEeceEEEEcceeeeeeeEEEecCC-eEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhcc
Confidence 5788999999998544 999999999 99999999999999999999 44332 122221
Q ss_pred -eecCCC--CCCccH-----------------------------HHHHHHHcCCchhhhcccccccHHHHH-HHHHHHhc
Q 006974 383 -YLPAKN--HPRLPW-----------------------------FDLILADIGDHQSLEQNLSTFSGHISR-IVDILELV 429 (623)
Q Consensus 383 -~vp~~~--~~~l~~-----------------------------~d~i~~~ig~~~~~~~~~stfS~g~~r-l~~~~~l~ 429 (623)
-.+|.+ +..+++ +|.+++.+|+.+..+...++||-|+|| +-+.+-++
T Consensus 84 GRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~ 163 (249)
T COG4674 84 GRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLA 163 (249)
T ss_pred CccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeec
Confidence 011111 011111 456688889999999999999999995 55556689
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (623)
Q Consensus 430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~ 493 (623)
++|.|+|+|||.+|+.-.+....++ ++..++. .++++++.||++ +..+++++.++..|++..
T Consensus 164 Q~P~lLLlDEPvAGMTd~Et~~tae-Ll~~la~-~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~ 226 (249)
T COG4674 164 QDPKLLLLDEPVAGMTDAETEKTAE-LLKSLAG-KHSILVVEHDMGFVREIADKVTVLHEGSVLA 226 (249)
T ss_pred cCCcEEEecCccCCCcHHHHHHHHH-HHHHHhc-CceEEEEeccHHHHHHhhheeEEEeccceee
Confidence 9999999999999999999999999 6766776 478999999999 567999999998888754
No 355
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=4.5e-21 Score=191.35 Aligned_cols=162 Identities=23% Similarity=0.323 Sum_probs=132.9
Q ss_pred eeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------hhhc----------eeecC
Q 006974 331 SLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------SKAG----------LYLPA 386 (623)
Q Consensus 331 ~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------a~~G----------~~vp~ 386 (623)
|+.+.+|+..+.++|.++.. .+++|.|++||||||++|+| |++.+. +..| .||+|
T Consensus 5 ~~~~~lG~~~l~a~~~~p~~-GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQ 83 (352)
T COG4148 5 NFRQRLGNFALDANFTLPAR-GITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQ 83 (352)
T ss_pred ehhhhcCceEEEEeccCCCC-ceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEee
Confidence 34455666666889998874 59999999999999999999 777541 1222 25555
Q ss_pred CCC--C---------------CccHHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHH
Q 006974 387 KNH--P---------------RLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 448 (623)
Q Consensus 387 ~~~--~---------------~l~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~ 448 (623)
+.. + ....||++...+|++..+++.+++||||++ |+++.+++.+.|.|+|||||.+.||..-
T Consensus 84 DARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~R 163 (352)
T COG4148 84 DARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR 163 (352)
T ss_pred ccccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccch
Confidence 420 1 112388999999999999999999999999 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC-CcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 449 GVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 449 ~~~l~~all~~l~~~-~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
...+.- .++.|.+. +.-++.+||.++ +..+||+++.++||++...
T Consensus 164 K~Eilp-ylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~ 210 (352)
T COG4148 164 KREILP-YLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKAS 210 (352)
T ss_pred hhHHHH-HHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEec
Confidence 999998 78888765 667999999976 8899999999999998754
No 356
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.84 E-value=9.6e-21 Score=213.64 Aligned_cols=158 Identities=18% Similarity=0.235 Sum_probs=120.5
Q ss_pred CcEEEceeeeecCCc--cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh
Q 006974 325 SEMTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 380 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~--~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~ 380 (623)
+.++++||+++|++. ++ ++|+++++| +.++|+||||||||||+|++ |+..+- .+.
T Consensus 319 ~~i~~~~v~f~y~~~~~~il~~i~l~i~~G-~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~ 397 (529)
T TIGR02857 319 PSLEFSGLSVAYPGRRAPALRPVSFTVPPG-ERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ 397 (529)
T ss_pred CeEEEEEEEEECCCCCcccccceeEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhh
Confidence 358999999999752 34 999999999 99999999999999999999 665431 123
Q ss_pred ceeecCCCCC-CccH---------------HHHHHHHcCCchhh-----------hcccccccHHHH-HHHHHHHhcCCC
Q 006974 381 GLYLPAKNHP-RLPW---------------FDLILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRE 432 (623)
Q Consensus 381 G~~vp~~~~~-~l~~---------------~d~i~~~ig~~~~~-----------~~~~stfS~g~~-rl~~~~~l~~~~ 432 (623)
-.|+||+... .-+. +...+...|..+.+ .....+||||++ |++++++++.+|
T Consensus 398 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~ 477 (529)
T TIGR02857 398 IAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDA 477 (529)
T ss_pred eEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCC
Confidence 3577777520 0011 22333444444333 334578999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccce
Q 006974 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTR 485 (623)
Q Consensus 433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~ 485 (623)
+++||||||+++|+.....+.+.+.+ +. .++|+|++||+.+....||+++.
T Consensus 478 ~ililDE~ts~lD~~~~~~i~~~l~~-~~-~~~t~i~itH~~~~~~~~d~i~~ 528 (529)
T TIGR02857 478 PLLLLDEPTAHLDAETEALVTEALRA-LA-QGRTVLLVTHRLALAERADRIVV 528 (529)
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHH-hc-CCCEEEEEecCHHHHHhCCEEEe
Confidence 99999999999999999999986654 33 47899999999987777887653
No 357
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=3.2e-21 Score=205.84 Aligned_cols=167 Identities=18% Similarity=0.205 Sum_probs=126.2
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhh--hhhh----hhhceeecCCCC--------
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGL--ASLM----SKAGLYLPAKNH-------- 389 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl--~~~~----a~~G~~vp~~~~-------- 389 (623)
.|.+.+++..||++.+ .-++++..| +.++|+||||+|||||||+|+- +..+ --.|.++|+.-.
T Consensus 80 Di~~~~fdLa~G~k~LL~~a~L~L~~G-rRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~ 158 (582)
T KOG0062|consen 80 DIHIDNFDLAYGGKILLNKANLTLSRG-RRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTER 158 (582)
T ss_pred ceeeeeeeeeecchhhhcCCceeeecc-cccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHH
Confidence 4677889999998776 788899999 9999999999999999999933 2111 012333333210
Q ss_pred -----------CC---ccHHHHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHH
Q 006974 390 -----------PR---LPWFDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALA 453 (623)
Q Consensus 390 -----------~~---l~~~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~ 453 (623)
+. -..+++++..+|.. +...++..+||||-+ |+++|+++..+|+|||||||||+||... ++
T Consensus 159 ~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~a---v~ 235 (582)
T KOG0062|consen 159 LDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVA---VA 235 (582)
T ss_pred HHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHH---HH
Confidence 00 00123356677765 456789999999999 9999999999999999999999999965 44
Q ss_pred HHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEecCc
Q 006974 454 TSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSLET 497 (623)
Q Consensus 454 ~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~~~~ 497 (623)
| +-+||...+.|+|+||||.. |..+|..++.+++-++.++.++
T Consensus 236 W-Le~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN 279 (582)
T KOG0062|consen 236 W-LENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGN 279 (582)
T ss_pred H-HHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCc
Confidence 5 55678887899999999988 6789998888877666555443
No 358
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.84 E-value=1.1e-20 Score=200.31 Aligned_cols=139 Identities=17% Similarity=0.109 Sum_probs=109.7
Q ss_pred EEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeecCCCC--CCccHH--------------------
Q 006974 356 ITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAKNH--PRLPWF-------------------- 395 (623)
Q Consensus 356 I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp~~~~--~~l~~~-------------------- 395 (623)
|+||||||||||||+| |+..+. .+...|+|+... ..+++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 6899999999999999 776431 112346777641 112222
Q ss_pred -HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974 396 -DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (623)
Q Consensus 396 -d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~ 473 (623)
+.++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+|||+.....+...+.+...+.+.|+|++||+
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd 160 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 2345667777778899999999999 89999999999999999999999999999999995554434458899999999
Q ss_pred hh-HHhhccccceeeCceEEEe
Q 006974 474 AD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 474 ~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
.+ +..+||++..+.+|++...
T Consensus 161 ~~e~~~~~d~i~vl~~G~i~~~ 182 (325)
T TIGR01187 161 QEEAMTMSDRIAIMRKGKIAQI 182 (325)
T ss_pred HHHHHHhCCEEEEEECCEEEEE
Confidence 87 5679999999999998654
No 359
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.83 E-value=2.1e-19 Score=193.03 Aligned_cols=157 Identities=22% Similarity=0.313 Sum_probs=121.7
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccH----------
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW---------- 394 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~---------- 394 (623)
+.+.|++++|.+..+ +..|++.+| +.++|+|||||||||+|++| .|..+|......+-.
T Consensus 76 vk~~sls~s~~g~~l~kd~~~El~~g-~rygLiG~nG~Gkst~L~~i--------~~~e~P~p~~~d~y~ls~e~~ps~~ 146 (614)
T KOG0927|consen 76 VKIESLSLSFHGVELIKDVTLELNRG-RRYGLIGPNGSGKSTFLRAI--------AGREVPIPEHIDFYLLSREIEPSEK 146 (614)
T ss_pred ceeeeeeeccCCceeeeeeeEEecCC-ceEEEEcCCCCcHhHHHHHH--------hcCCCCCCcccchhhhcccCCCchH
Confidence 567889999977665 999999999 99999999999999999999 555555432110000
Q ss_pred -----------------------------------HH-------------------HHHHHcC-CchhhhcccccccHHH
Q 006974 395 -----------------------------------FD-------------------LILADIG-DHQSLEQNLSTFSGHI 419 (623)
Q Consensus 395 -----------------------------------~d-------------------~i~~~ig-~~~~~~~~~stfS~g~ 419 (623)
++ +++..+| ......+.+..||||.
T Consensus 147 ~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGw 226 (614)
T KOG0927|consen 147 QAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGW 226 (614)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchH
Confidence 00 1222233 2345678899999999
Q ss_pred H-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCc-EEEEEcCchh-HHhhccccceeeCceEEEecC
Q 006974 420 S-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG-LAVVTTHYAD-LSCLKDKDTRFENAATEFSLE 496 (623)
Q Consensus 420 ~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~-~vii~TH~~~-l~~~~~~~~~i~~g~~~~~~~ 496 (623)
+ |+++++++..+|+||||||||+|||+.....|.. +|.+... ++++++|+.+ +..+|++++.+.++...++.+
T Consensus 227 rmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee----~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~G 302 (614)
T KOG0927|consen 227 RMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEE----YLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEG 302 (614)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHH----HHHhccCceEEEEecchhhhhhHhhhhheecccceeeecC
Confidence 9 9999999999999999999999999977665555 5655555 8999999998 778999999999988666644
No 360
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=6.8e-20 Score=177.02 Aligned_cols=153 Identities=14% Similarity=0.203 Sum_probs=117.8
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-------------------hhceeecCCC----CCCccHHHH
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-------------------KAGLYLPAKN----HPRLPWFDL 397 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-------------------~~G~~vp~~~----~~~l~~~d~ 397 (623)
.+++++..| +++.|+|.||+|||||++++ |-+.+-+ ..-.-|+|++ +..+++.++
T Consensus 24 ~~sL~I~~g-~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieEN 102 (263)
T COG1101 24 GLSLEIAEG-DFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEEN 102 (263)
T ss_pred cCceeecCC-ceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHH
Confidence 899999999 99999999999999999999 3332210 0001111211 112222222
Q ss_pred ---------------------------HHHH--cCCchhhhcccccccHHHHH-HHHHHHhcCCCcEEEEeCCCCCCCHH
Q 006974 398 ---------------------------ILAD--IGDHQSLEQNLSTFSGHISR-IVDILELVSRESLVLIDEIGSGTDPS 447 (623)
Q Consensus 398 ---------------------------i~~~--ig~~~~~~~~~stfS~g~~r-l~~~~~l~~~~~LlLLDEp~~glD~~ 447 (623)
-++. .|++..+..++.-||||++| ++++++-+.+|++++|||-|+.|||.
T Consensus 103 l~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPk 182 (263)
T COG1101 103 LALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPK 182 (263)
T ss_pred HHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcc
Confidence 2222 35677888999999999995 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEec
Q 006974 448 EGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (623)
Q Consensus 448 ~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~~ 495 (623)
....+.+.-.+...+.+.|++++||+++ -..+.++.+.++.|+++.|.
T Consensus 183 ta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 183 TAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred hHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEc
Confidence 9999999666666677889999999988 55789999999999999874
No 361
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.82 E-value=5.1e-20 Score=207.79 Aligned_cols=146 Identities=22% Similarity=0.257 Sum_probs=112.2
Q ss_pred CcEEEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhhce
Q 006974 325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGL 382 (623)
Q Consensus 325 ~~l~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~G~ 382 (623)
+.++++||+++|++ +.+ ++||++++| +.++|+||+|||||||+|.+ |+..+- .+.-.
T Consensus 333 ~~I~~~~vsf~Y~~~~~vL~~isl~i~~G-~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~ 411 (529)
T TIGR02868 333 PTLELRDLSFGYPGSPPVLDGVSLDLPPG-ERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRIS 411 (529)
T ss_pred ceEEEEEEEEecCCCCceeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheE
Confidence 45899999999975 344 999999999 99999999999999999999 665431 12335
Q ss_pred eecCCCCCCc--cH---------------HHHHHHHcCCchhhh-----------cccccccHHHH-HHHHHHHhcCCCc
Q 006974 383 YLPAKNHPRL--PW---------------FDLILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVSRES 433 (623)
Q Consensus 383 ~vp~~~~~~l--~~---------------~d~i~~~ig~~~~~~-----------~~~stfS~g~~-rl~~~~~l~~~~~ 433 (623)
||||+.. -+ ++ +.+.+...+..+.+. ..-..|||||+ |+++|++++.+|+
T Consensus 412 ~V~Q~~~-lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~ 490 (529)
T TIGR02868 412 VFAQDAH-LFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAP 490 (529)
T ss_pred EEccCcc-cccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCC
Confidence 8888752 11 11 223344445544433 23467999999 8999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCch
Q 006974 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (623)
Q Consensus 434 LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~ 474 (623)
++||||||+++|+.....+.+.+.+ + ..+.|+|++||..
T Consensus 491 iliLDE~TSaLD~~te~~I~~~l~~-~-~~~~TvIiItHrl 529 (529)
T TIGR02868 491 ILLLDEPTEHLDAGTESELLEDLLA-A-LSGKTVVVITHHL 529 (529)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHH-h-cCCCEEEEEecCC
Confidence 9999999999999999999886654 3 2368999999973
No 362
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.82 E-value=9.6e-20 Score=224.38 Aligned_cols=169 Identities=15% Similarity=0.188 Sum_probs=133.5
Q ss_pred CCcEEEceeeeecC----Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh---hh---------------h
Q 006974 324 NSEMTVGSLSKGIS----DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS---LM---------------S 378 (623)
Q Consensus 324 ~~~l~~~~l~~~y~----~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~---~~---------------a 378 (623)
...++++||++.|+ ++.+ ++|+.+.+| ++++|+|||||||||||++| |+.. +. .
T Consensus 757 ~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~G-e~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~ 835 (1394)
T TIGR00956 757 EDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPG-TLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQ 835 (1394)
T ss_pred CceEEEEeeEEEecCCCCCcEeeeCCEEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhh
Confidence 34578999999995 3344 999999999 99999999999999999999 6653 11 1
Q ss_pred hhceeecCCCC--CCccH------------------------HHHHHHHcCCchhhhcccc----cccHHHH-HHHHHHH
Q 006974 379 KAGLYLPAKNH--PRLPW------------------------FDLILADIGDHQSLEQNLS----TFSGHIS-RIVDILE 427 (623)
Q Consensus 379 ~~G~~vp~~~~--~~l~~------------------------~d~i~~~ig~~~~~~~~~s----tfS~g~~-rl~~~~~ 427 (623)
+.-.|+||+.. ..+++ +++++..+|+.+..++.++ .|||||+ |+.++++
T Consensus 836 ~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 836 RSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred cceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHH
Confidence 12357887631 11111 2455667777776777776 7999999 8999999
Q ss_pred hcCCCc-EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH--HhhccccceeeCc-eEEEe
Q 006974 428 LVSRES-LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL--SCLKDKDTRFENA-ATEFS 494 (623)
Q Consensus 428 l~~~~~-LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l--~~~~~~~~~i~~g-~~~~~ 494 (623)
++.+|+ ++||||||+|||+.....+.. +++.+++.|.|||++||++.. ...+|++..+.+| ++.+.
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~-~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~ 985 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQTAWSICK-LMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYF 985 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEE
Confidence 999996 999999999999999999999 566677778999999999873 4679999999987 87765
No 363
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.81 E-value=1.3e-19 Score=206.20 Aligned_cols=165 Identities=17% Similarity=0.190 Sum_probs=126.9
Q ss_pred CcEEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh--------------------hhhh
Q 006974 325 SEMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--------------------MSKA 380 (623)
Q Consensus 325 ~~l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~--------------------~a~~ 380 (623)
+.++++||+++|+ ++.+ ++||.+++| +.++|+||+||||||+++.+ ++..+ ..+.
T Consensus 327 ~~I~f~~vsf~y~~~~~vl~~is~~i~~G-e~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I 405 (567)
T COG1132 327 GSIEFENVSFSYPGKKPVLKDISFSIEPG-EKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRI 405 (567)
T ss_pred CeEEEEEEEEEcCCCCccccCceEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhc
Confidence 4599999999998 4555 899999999 99999999999999999999 45432 1233
Q ss_pred ceeecCCCCCCcc--HHH---------------HHHHHcC-----------CchhhhcccccccHHHH-HHHHHHHhcCC
Q 006974 381 GLYLPAKNHPRLP--WFD---------------LILADIG-----------DHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (623)
Q Consensus 381 G~~vp~~~~~~l~--~~d---------------~i~~~ig-----------~~~~~~~~~stfS~g~~-rl~~~~~l~~~ 431 (623)
+ +|||+.. .+. +.+ +.+...+ .+..+...-..||||+| |+++|++++.+
T Consensus 406 ~-~V~Qd~~-LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~ 483 (567)
T COG1132 406 G-IVSQDPL-LFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRN 483 (567)
T ss_pred c-EEcccce-eecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 3 7887651 111 111 1222222 22233345578999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
|+++||||||+++|+.....+.+++.+ +. ++.|+|+++|.+.....||++.++++|++...
T Consensus 484 ~~ILILDEaTSalD~~tE~~I~~~l~~-l~-~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~ 544 (567)
T COG1132 484 PPILILDEATSALDTETEALIQDALKK-LL-KGRTTLIIAHRLSTIKNADRIIVLDNGRIVER 544 (567)
T ss_pred CCEEEEeccccccCHHhHHHHHHHHHH-Hh-cCCEEEEEeccHhHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999997663 44 35699999999986666999999999996544
No 364
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.81 E-value=1.1e-19 Score=179.07 Aligned_cols=138 Identities=17% Similarity=0.142 Sum_probs=103.2
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------h---------hhceeecCCCCCCcc--
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------S---------KAGLYLPAKNHPRLP-- 393 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------a---------~~G~~vp~~~~~~l~-- 393 (623)
++++++.+| +++|+|||||||||||+++ |++... . ....++|+.....++
T Consensus 15 ~~~l~~~~g--~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~ 92 (197)
T cd03278 15 KTTIPFPPG--LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSII 92 (197)
T ss_pred CeeeecCCC--cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEE
Confidence 567788877 8999999999999999999 554110 0 112366665433221
Q ss_pred ---HHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhc----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCc
Q 006974 394 ---WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG 465 (623)
Q Consensus 394 ---~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~----~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~ 465 (623)
-+++++.. .+..++.+.+||+||+ +++++++++ .+|+++|||||++|+|+.....+.. ++..+.+ +.
T Consensus 93 ~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~-~l~~~~~-~~ 167 (197)
T cd03278 93 SQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFAR-LLKEFSK-ET 167 (197)
T ss_pred ehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHH-HHHHhcc-CC
Confidence 13445544 4456788999999999 788888765 5779999999999999999999999 5555655 68
Q ss_pred EEEEEcCchhHHhhcccccee
Q 006974 466 LAVVTTHYADLSCLKDKDTRF 486 (623)
Q Consensus 466 ~vii~TH~~~l~~~~~~~~~i 486 (623)
++|++||++++..+||+++.+
T Consensus 168 tiIiitH~~~~~~~~d~v~~~ 188 (197)
T cd03278 168 QFIVITHRKGTMEAADRLYGV 188 (197)
T ss_pred EEEEEECCHHHHhhcceEEEE
Confidence 999999999877788877654
No 365
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.81 E-value=1e-19 Score=215.57 Aligned_cols=167 Identities=24% Similarity=0.283 Sum_probs=139.1
Q ss_pred CcEEEceeeeecCCcc--c-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--------------------hh
Q 006974 325 SEMTVGSLSKGISDFP--V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------------------KA 380 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~--v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--------------------~~ 380 (623)
..+.++|+++.|+... | ++++.+++| ++.+++|||||||||++|++ |...+-+ +.
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~g-ecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~ 641 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPG-ECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ 641 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCC-ceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence 4678899999998764 5 999999999 99999999999999999998 6664311 12
Q ss_pred ceeecCCCCCCc------------------c------HHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974 381 GLYLPAKNHPRL------------------P------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (623)
Q Consensus 381 G~~vp~~~~~~l------------------~------~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll 435 (623)
-.|.||.. +.. + .++.++..+|+.+..++.++++|||+| |++.+++++.+|+++
T Consensus 642 iGyCPQ~d-~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi 720 (885)
T KOG0059|consen 642 LGYCPQFD-ALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVI 720 (885)
T ss_pred cccCCchh-hhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEE
Confidence 23677763 111 1 134567778889999999999999999 799999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH-HhhccccceeeCceEEEe
Q 006974 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (623)
Q Consensus 436 LLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l-~~~~~~~~~i~~g~~~~~ 494 (623)
+||||++|+||..+..++. ++..+++.+..+|+|||+++. ..+|++..++.+|++.+-
T Consensus 721 ~LDEPstGmDP~arr~lW~-ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ci 779 (885)
T KOG0059|consen 721 LLDEPSTGLDPKARRHLWD-IIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCI 779 (885)
T ss_pred EecCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEe
Confidence 9999999999999999988 667777766699999999985 469999999999998874
No 366
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=1.4e-19 Score=168.73 Aligned_cols=152 Identities=20% Similarity=0.352 Sum_probs=120.6
Q ss_pred cEEEceeeeec-----CCc--cc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCC-------
Q 006974 326 EMTVGSLSKGI-----SDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH------- 389 (623)
Q Consensus 326 ~l~~~~l~~~y-----~~~--~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~------- 389 (623)
.+.++|++|+| ++. +| +++|++..| +++++-||+|+||||+||++ .|-|.|.+|.
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aG-ECvvL~G~SG~GKStllr~L--------YaNY~~d~G~I~v~H~g 74 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAG-ECVVLHGPSGSGKSTLLRSL--------YANYLPDEGQILVRHEG 74 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCc-cEEEeeCCCCCcHHHHHHHH--------HhccCCCCceEEEEeCc
Confidence 35677888877 221 23 899999999 99999999999999999999 6777776652
Q ss_pred ------------------CCccHHH----------------------------------HHHHHcCCchhh-hccccccc
Q 006974 390 ------------------PRLPWFD----------------------------------LILADIGDHQSL-EQNLSTFS 416 (623)
Q Consensus 390 ------------------~~l~~~d----------------------------------~i~~~ig~~~~~-~~~~stfS 416 (623)
..++|+. .+++++++...+ .-.++|||
T Consensus 75 ~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFS 154 (235)
T COG4778 75 EWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFS 154 (235)
T ss_pred chhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccC
Confidence 1122221 346666766544 45789999
Q ss_pred HHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHH-hhccccceee
Q 006974 417 GHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFE 487 (623)
Q Consensus 417 ~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~-~~~~~~~~i~ 487 (623)
||++ |+.+++.++.+-.++||||||+.||...++.+.+ ++..-+.+|+.+|=+=||.++. .+||+...+.
T Consensus 155 GGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVve-li~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 155 GGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVE-LIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred CchheehhhhhhhhccCceEEecCCcccccccchHHHHH-HHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 9999 7999999999999999999999999999999999 6666788899999999999865 5788776553
No 367
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.80 E-value=1.8e-19 Score=222.31 Aligned_cols=162 Identities=13% Similarity=0.136 Sum_probs=124.4
Q ss_pred cEEEceeeeecCCc---cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hh
Q 006974 326 EMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SK 379 (623)
Q Consensus 326 ~l~~~~l~~~y~~~---~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~ 379 (623)
.++++||++.|++. .+ ++||++++| ++++|+||||||||||++++ |+..+. .+
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~G-e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~ 460 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEG-KTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRS 460 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCC-CEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHH
Confidence 58999999999742 34 999999999 99999999999999999999 665321 11
Q ss_pred hceeecCCCCCCc--cHHHHH-----------------------------------------------------------
Q 006974 380 AGLYLPAKNHPRL--PWFDLI----------------------------------------------------------- 398 (623)
Q Consensus 380 ~G~~vp~~~~~~l--~~~d~i----------------------------------------------------------- 398 (623)
...||||+.. .+ ++.+++
T Consensus 461 ~Ig~V~Q~~~-LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 539 (1466)
T PTZ00265 461 KIGVVSQDPL-LFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRK 539 (1466)
T ss_pred hccEeccccc-chhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhccc
Confidence 2246777641 11 122222
Q ss_pred -------------HHHcCCchhh-----------hcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHH
Q 006974 399 -------------LADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALA 453 (623)
Q Consensus 399 -------------~~~ig~~~~~-----------~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~ 453 (623)
+..+++.+.+ ....+.|||||+ |+++|++++.+|++|||||||++||+.....+.
T Consensus 540 ~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~ 619 (1466)
T PTZ00265 540 NYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQ 619 (1466)
T ss_pred ccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHH
Confidence 1123333322 345689999999 899999999999999999999999999999998
Q ss_pred HHHHHHHhc-CCcEEEEEcCchhHHhhccccceeeCce
Q 006974 454 TSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAA 490 (623)
Q Consensus 454 ~all~~l~~-~~~~vii~TH~~~l~~~~~~~~~i~~g~ 490 (623)
.++.+ +.+ .|.|+|++||+++....||+++.+.+|+
T Consensus 620 ~~L~~-~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~ 656 (1466)
T PTZ00265 620 KTINN-LKGNENRITIIIAHRLSTIRYANTIFVLSNRE 656 (1466)
T ss_pred HHHHH-HhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCc
Confidence 85544 543 5789999999998778999999998874
No 368
>PLN03140 ABC transporter G family member; Provisional
Probab=99.80 E-value=4.4e-19 Score=218.17 Aligned_cols=167 Identities=17% Similarity=0.205 Sum_probs=130.3
Q ss_pred cEEEceeeeecC-------------Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------
Q 006974 326 EMTVGSLSKGIS-------------DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------- 376 (623)
Q Consensus 326 ~l~~~~l~~~y~-------------~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~------------- 376 (623)
.+..+||++... ...+ ++|+.+.+| ++++|+|||||||||||++| |....
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~G-el~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPG-VLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECC-eEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 578899987763 2234 999999999 99999999999999999999 55421
Q ss_pred -----hhhhceeecCCCC--CCccH------------------------HHHHHHHcCCchhhhccc-----ccccHHHH
Q 006974 377 -----MSKAGLYLPAKNH--PRLPW------------------------FDLILADIGDHQSLEQNL-----STFSGHIS 420 (623)
Q Consensus 377 -----~a~~G~~vp~~~~--~~l~~------------------------~d~i~~~ig~~~~~~~~~-----stfS~g~~ 420 (623)
..+...|+|+... ..+++ ++.++..+|+.+..+..+ +.||||||
T Consensus 946 ~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGer 1025 (1470)
T PLN03140 946 KKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQR 1025 (1470)
T ss_pred CChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHH
Confidence 0122357777631 11111 334566677766666654 68999999
Q ss_pred -HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh--HHhhccccceeeC-ceEEEe
Q 006974 421 -RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFEN-AATEFS 494 (623)
Q Consensus 421 -rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~--l~~~~~~~~~i~~-g~~~~~ 494 (623)
|+.++++++.+|++++|||||+|||+.....+.. +++.+++.|.|||++||+.+ +..++|+...+.+ |++.+.
T Consensus 1026 kRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~-~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~ 1102 (1470)
T PLN03140 1026 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYS 1102 (1470)
T ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEE
Confidence 8999999999999999999999999999999999 55667777899999999986 4678999999986 787665
No 369
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.80 E-value=2.9e-19 Score=204.87 Aligned_cols=152 Identities=20% Similarity=0.236 Sum_probs=122.5
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhceeecCCCC--CCccH-----
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLYLPAKNH--PRLPW----- 394 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~~vp~~~~--~~l~~----- 394 (623)
++|+.+.+| ++++|+|||||||||||+++ |....- .+...|+|++.. ..+++
T Consensus 43 ~vs~~i~~G-e~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~ 121 (617)
T TIGR00955 43 NVSGVAKPG-ELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLM 121 (617)
T ss_pred CCEEEEeCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHH
Confidence 999999999 99999999999999999999 554321 112257787641 11111
Q ss_pred -------------------HHHHHHHcCCchhhhcccc------cccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHH
Q 006974 395 -------------------FDLILADIGDHQSLEQNLS------TFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 448 (623)
Q Consensus 395 -------------------~d~i~~~ig~~~~~~~~~s------tfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~ 448 (623)
++.++..+|+.+..+..+. .+|||++ |++++++++.+|++++|||||+|||+..
T Consensus 122 f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~ 201 (617)
T TIGR00955 122 FQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFM 201 (617)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHH
Confidence 3456677777766666655 5999999 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcCchh--HHhhccccceeeCceEEEec
Q 006974 449 GVALATSILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFENAATEFSL 495 (623)
Q Consensus 449 ~~~l~~all~~l~~~~~~vii~TH~~~--l~~~~~~~~~i~~g~~~~~~ 495 (623)
...+.. .++.+.+.|.|+|++||+.. +..++|++..+.+|++.+..
T Consensus 202 ~~~l~~-~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G 249 (617)
T TIGR00955 202 AYSVVQ-VLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLG 249 (617)
T ss_pred HHHHHH-HHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEEC
Confidence 999999 45567777899999999973 67899999999999998763
No 370
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.80 E-value=3.6e-19 Score=219.70 Aligned_cols=165 Identities=15% Similarity=0.182 Sum_probs=126.4
Q ss_pred CcEEEceeeeecCC---ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------
Q 006974 325 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (623)
Q Consensus 325 ~~l~~~~l~~~y~~---~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------- 377 (623)
+.++++||+|+|++ .+| ++||++++| +.++|+||+||||||+++++ |+..+.
T Consensus 1164 g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G-~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~ 1242 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISRPNVPIYKDLTFSCDSK-KTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDY 1242 (1466)
T ss_pred ceEEEEEEEEECCCCCCCccccCeeEEEcCC-CEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccc
Confidence 46999999999953 345 999999999 99999999999999999999 665541
Q ss_pred ----------------------------------------------------hhhceeecCCCCCCc--cHHH-------
Q 006974 378 ----------------------------------------------------SKAGLYLPAKNHPRL--PWFD------- 396 (623)
Q Consensus 378 ----------------------------------------------------a~~G~~vp~~~~~~l--~~~d------- 396 (623)
.+...||||+.. .+ ++.+
T Consensus 1243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~-LF~gTIreNI~~g~~ 1321 (1466)
T PTZ00265 1243 QGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPM-LFNMSIYENIKFGKE 1321 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCc-cccccHHHHHhcCCC
Confidence 111236676641 11 1112
Q ss_pred --------HHHHHcCCchhh-----------hcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 006974 397 --------LILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSI 456 (623)
Q Consensus 397 --------~i~~~ig~~~~~-----------~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~al 456 (623)
......++.+.+ ...-..|||||+ |+++|++++.+|++|||||||++||+.....+..++
T Consensus 1322 ~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L 1401 (1466)
T PTZ00265 1322 DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI 1401 (1466)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 223333433332 234567999999 899999999999999999999999999999998866
Q ss_pred HHHHh-cCCcEEEEEcCchhHHhhccccceeeC----ceEE
Q 006974 457 LQYLR-DRVGLAVVTTHYADLSCLKDKDTRFEN----AATE 492 (623)
Q Consensus 457 l~~l~-~~~~~vii~TH~~~l~~~~~~~~~i~~----g~~~ 492 (623)
.+ +. .++.|+|++||.+.....||+++++.+ |++.
T Consensus 1402 ~~-~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv 1441 (1466)
T PTZ00265 1402 VD-IKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFV 1441 (1466)
T ss_pred HH-HhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEE
Confidence 54 44 357899999999998788999999998 7754
No 371
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.80 E-value=2.8e-19 Score=163.53 Aligned_cols=149 Identities=19% Similarity=0.212 Sum_probs=122.2
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh---------------------hhhhc
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------MSKAG 381 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~---------------------~a~~G 381 (623)
.+.++||+.+.++... +++++|.+| +++-|.||+||||||||.-+ |.+.. ..|.|
T Consensus 2 ~l~l~nvsl~l~g~cLLa~~n~Tia~G-eivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~G 80 (213)
T COG4136 2 MLCLKNVSLRLPGSCLLANVNFTIAKG-EIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIG 80 (213)
T ss_pred ceeeeeeeecCCCceEEEeeeEEecCC-cEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhee
Confidence 4678899988888776 899999999 99999999999999999988 54421 12333
Q ss_pred eeecCCC--CCCc--------------------cHHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEe
Q 006974 382 LYLPAKN--HPRL--------------------PWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (623)
Q Consensus 382 ~~vp~~~--~~~l--------------------~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLD 438 (623)
. ++++. +..+ ...+..++++|+....++.+.++|||++ |+++.+.+...|+++|||
T Consensus 81 i-LFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLD 159 (213)
T COG4136 81 I-LFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLD 159 (213)
T ss_pred e-eecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeC
Confidence 2 22221 0111 1145568899999999999999999999 999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH
Q 006974 439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL 476 (623)
Q Consensus 439 Ep~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l 476 (623)
||++.||..-+..+.+-+...++..|.-+|.+|||+.-
T Consensus 160 EPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~D 197 (213)
T COG4136 160 EPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQD 197 (213)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccccc
Confidence 99999999999999998888888888899999999763
No 372
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.80 E-value=2.9e-19 Score=208.79 Aligned_cols=161 Identities=19% Similarity=0.241 Sum_probs=121.0
Q ss_pred CCCcEEEceeeeecCCcc---c--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCc-----
Q 006974 323 ENSEMTVGSLSKGISDFP---V--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRL----- 392 (623)
Q Consensus 323 g~~~l~~~~l~~~y~~~~---v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l----- 392 (623)
-+|.++++||+|+|+.++ | +++|.+++| +.++|+||+||||||+++.+ .++|-|..|...+
T Consensus 347 ~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G-~~valVG~SGsGKST~i~LL--------~RfydP~~G~V~idG~di 417 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSG-QTVALVGPSGSGKSTLIQLL--------ARFYDPTSGEVLIDGEDI 417 (1228)
T ss_pred cccceEEEEEEecCCCCCcchhhCCeEEEeCCC-CEEEEECCCCCCHHHHHHHH--------HHhcCCCCceEEEcCccc
Confidence 357899999999998654 3 899999999 99999999999999999999 4444444442111
Q ss_pred ------------------------cHHHHHH---------------HHcCCchh-----------hhcccccccHHHH-H
Q 006974 393 ------------------------PWFDLIL---------------ADIGDHQS-----------LEQNLSTFSGHIS-R 421 (623)
Q Consensus 393 ------------------------~~~d~i~---------------~~ig~~~~-----------~~~~~stfS~g~~-r 421 (623)
+..++|. ...+..+. +-..--.||||+| |
T Consensus 418 ~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQR 497 (1228)
T KOG0055|consen 418 RNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQR 497 (1228)
T ss_pred hhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHH
Confidence 1112221 00111111 1112234999999 8
Q ss_pred HHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 422 l~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
+++|++++.+|++|||||||++||+.+...+..|+ +... .|.|+|+++|.+..-+-+|.+.++++|+++..
T Consensus 498 IAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~AL-d~~~-~grTTivVaHRLStIrnaD~I~v~~~G~IvE~ 568 (1228)
T KOG0055|consen 498 IAIARALVRNPKILLLDEATSALDAESERVVQEAL-DKAS-KGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQ 568 (1228)
T ss_pred HHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHH-HHhh-cCCeEEEEeeehhhhhccCEEEEEECCEEEEe
Confidence 99999999999999999999999999998888854 4444 47799999999985555999999999998754
No 373
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=3.4e-19 Score=198.15 Aligned_cols=167 Identities=16% Similarity=0.171 Sum_probs=123.0
Q ss_pred CCcEEEceeeeecCCcc---c--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh-------------------hhh
Q 006974 324 NSEMTVGSLSKGISDFP---V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-------------------LMS 378 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~~~---v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~-------------------~~a 378 (623)
.|.++++||+|.|+.++ | +++|++++| ++++|+|||||||||+...+ -+.. ++.
T Consensus 463 ~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pG-e~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr 541 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPG-EVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLR 541 (716)
T ss_pred cceEEEEEeeeecCCCCCchhhcCceeeeCCC-CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHH
Confidence 46899999999997643 4 999999999 99999999999999999999 1111 011
Q ss_pred hhceeecCCCCCCcc--HHHHHH------------------------HHc--CCchhhhcccccccHHHH-HHHHHHHhc
Q 006974 379 KAGLYLPAKNHPRLP--WFDLIL------------------------ADI--GDHQSLEQNLSTFSGHIS-RIVDILELV 429 (623)
Q Consensus 379 ~~G~~vp~~~~~~l~--~~d~i~------------------------~~i--g~~~~~~~~~stfS~g~~-rl~~~~~l~ 429 (623)
+...+|-|++ ..++ +.++|. ..+ |.+-.+...-+.||||+| |+++|++++
T Consensus 542 ~~Ig~V~QEP-vLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl 620 (716)
T KOG0058|consen 542 RKIGLVGQEP-VLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL 620 (716)
T ss_pred HHeeeeeccc-eeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh
Confidence 1122333332 1111 112221 011 111223345679999999 899999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
.+|.+|||||-|+.||.++-..+.+++-+ +.+ +.|||++.|.+...+-||.+.++++|+++..
T Consensus 621 r~P~VLILDEATSALDaeSE~lVq~aL~~-~~~-~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~ 683 (716)
T KOG0058|consen 621 RNPRVLILDEATSALDAESEYLVQEALDR-LMQ-GRTVLVIAHRLSTVRHADQIVVIDKGRVVEM 683 (716)
T ss_pred cCCCEEEEechhhhcchhhHHHHHHHHHH-hhc-CCeEEEEehhhhHhhhccEEEEEcCCeEEec
Confidence 99999999999999999998888885444 343 4899999999998889999999999998754
No 374
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.79 E-value=9e-19 Score=187.20 Aligned_cols=168 Identities=24% Similarity=0.284 Sum_probs=129.3
Q ss_pred CCcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhh
Q 006974 324 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK 379 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~ 379 (623)
++.+.++++++.-.+ +++ +++|.+.+| +.++|+||+|||||||.|++ |...+ +++
T Consensus 332 ~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G-~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~ 410 (580)
T COG4618 332 QGALSVERLTAAPPGQKKPILKGISFALQAG-EALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR 410 (580)
T ss_pred CceeeEeeeeecCCCCCCcceecceeEecCC-ceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcc
Confidence 467888888875533 233 999999999 99999999999999999999 55432 223
Q ss_pred hceeecCCCCCCccH-HHHHHHHcC---------------------------CchhhhcccccccHHHH-HHHHHHHhcC
Q 006974 380 AGLYLPAKNHPRLPW-FDLILADIG---------------------------DHQSLEQNLSTFSGHIS-RIVDILELVS 430 (623)
Q Consensus 380 ~G~~vp~~~~~~l~~-~d~i~~~ig---------------------------~~~~~~~~~stfS~g~~-rl~~~~~l~~ 430 (623)
...|.||+-. .++. +.+=.++++ -+-.+-..-++||||+| |+.+++++-.
T Consensus 411 hiGYLPQdVe-LF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG 489 (580)
T COG4618 411 HIGYLPQDVE-LFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYG 489 (580)
T ss_pred ccCcCcccce-ecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcC
Confidence 3346777531 1111 111112222 12233445689999999 8999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
+|.||+||||-++||...-.+|..+|.. ++.+|+|+|++||-..+...+|++..+.+|.+...
T Consensus 490 ~P~lvVLDEPNsNLD~~GE~AL~~Ai~~-~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~F 552 (580)
T COG4618 490 DPFLVVLDEPNSNLDSEGEAALAAAILA-AKARGGTVVVIAHRPSALASVDKILVLQDGRIAAF 552 (580)
T ss_pred CCcEEEecCCCCCcchhHHHHHHHHHHH-HHHcCCEEEEEecCHHHHhhcceeeeecCChHHhc
Confidence 9999999999999999999999997765 78889999999999999999999999999988644
No 375
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.79 E-value=1.2e-18 Score=173.93 Aligned_cols=160 Identities=20% Similarity=0.202 Sum_probs=107.7
Q ss_pred EEEceeeeecCCcccccccccc-CCceEEEEEcCCCCCHHHHHHHHh--hhhhh---------hh---------hceeec
Q 006974 327 MTVGSLSKGISDFPVPIDIKVE-CETRVVVITGPNTGGKTASMKTLG--LASLM---------SK---------AGLYLP 385 (623)
Q Consensus 327 l~~~~l~~~y~~~~v~i~l~l~-~g~~~~~I~GpNgsGKSTlLk~ig--l~~~~---------a~---------~G~~vp 385 (623)
++++|+. +|.+. ..++|... +| ++++|+|||||||||+|++|. +.-.. .. ...+++
T Consensus 6 i~l~nf~-~y~~~-~~i~~~~~~~~-~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f 82 (213)
T cd03279 6 LELKNFG-PFREE-QVIDFTGLDNN-GLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTF 82 (213)
T ss_pred EEEECCc-CcCCc-eEEeCCCCCcc-CEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEE
Confidence 5667776 54332 23445443 35 799999999999999999992 21000 00 001122
Q ss_pred CCCCC--------CccH--HHHH--HHHcCCchhhhcccccccHHHH-HHHHHHHhcC----------CCcEEEEeCCCC
Q 006974 386 AKNHP--------RLPW--FDLI--LADIGDHQSLEQNLSTFSGHIS-RIVDILELVS----------RESLVLIDEIGS 442 (623)
Q Consensus 386 ~~~~~--------~l~~--~d~i--~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~----------~~~LlLLDEp~~ 442 (623)
+.... .++. +.+. +...+....+++++.+||+|++ +++++++++. +|+++|||||++
T Consensus 83 ~~~~~~~~~~r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~ 162 (213)
T cd03279 83 QLGGKKYRVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFG 162 (213)
T ss_pred EECCeEEEEEEecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcc
Confidence 21110 0111 2221 1222356677899999999999 7888888864 578999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCce
Q 006974 443 GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAA 490 (623)
Q Consensus 443 glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~ 490 (623)
|+|+.....+.. ++..+.+.+.|+|++||+++ +..+++++..+.+|.
T Consensus 163 ~lD~~~~~~~~~-~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 163 TLDPEALEAVAT-ALELIRTENRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred cCCHHHHHHHHH-HHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 999999999988 45566766889999999988 456778777777764
No 376
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.78 E-value=1.4e-18 Score=180.90 Aligned_cols=166 Identities=16% Similarity=0.201 Sum_probs=132.3
Q ss_pred cEEEceeeeecC----Ccc-c-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--------------------
Q 006974 326 EMTVGSLSKGIS----DFP-V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-------------------- 378 (623)
Q Consensus 326 ~l~~~~l~~~y~----~~~-v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-------------------- 378 (623)
.+.++|++..|+ ... | ++||++.+| +.++|+|.+|||||+....+ +|+...+
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~G-EtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAG-ETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCC-CEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 467889999885 222 3 999999999 99999999999999998888 7765310
Q ss_pred --------hhceeecCCCCCCccHHH--------------------------HHHHHcCCc---hhhhcccccccHHHH-
Q 006974 379 --------KAGLYLPAKNHPRLPWFD--------------------------LILADIGDH---QSLEQNLSTFSGHIS- 420 (623)
Q Consensus 379 --------~~G~~vp~~~~~~l~~~d--------------------------~i~~~ig~~---~~~~~~~stfS~g~~- 420 (623)
.....+++++...++++. .++..+|+. ..++..+..||||++
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQ 164 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQ 164 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhh
Confidence 112356666544443311 345667764 367889999999999
Q ss_pred HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974 421 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (623)
Q Consensus 421 rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~-~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~ 493 (623)
|+.+|++++++|+|+|.||||+.||..-.+.|.. ++..|. +.|..++++|||+. +..++|++.++..|.++.
T Consensus 165 RVMIAMALan~P~lLIADEPTTALDVtvQaQIL~-Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE 238 (534)
T COG4172 165 RVMIAMALANEPDLLIADEPTTALDVTVQAQILD-LLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVE 238 (534)
T ss_pred HHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHH-HHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEee
Confidence 8999999999999999999999999999999999 555555 56899999999998 668999999999998764
No 377
>PLN03232 ABC transporter C family member; Provisional
Probab=99.78 E-value=9.1e-19 Score=217.60 Aligned_cols=166 Identities=14% Similarity=0.109 Sum_probs=129.4
Q ss_pred CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhhh
Q 006974 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (623)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~~ 380 (623)
|.++++||+++|+. .++ ++||++++| +.++|+||+|||||||++++ |+..+ +.+.
T Consensus 1233 g~I~f~nVsf~Y~~~~~~vL~~isl~I~~G-ekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~ 1311 (1495)
T PLN03232 1233 GSIKFEDVHLRYRPGLPPVLHGLSFFVSPS-EKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRV 1311 (1495)
T ss_pred CcEEEEEEEEEECCCCCcccccceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhh
Confidence 56999999999953 345 999999999 99999999999999999999 65532 1233
Q ss_pred ceeecCCCCCCcc--H--------------HHHHHHHcCCchhh-----------hcccccccHHHH-HHHHHHHhcCCC
Q 006974 381 GLYLPAKNHPRLP--W--------------FDLILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRE 432 (623)
Q Consensus 381 G~~vp~~~~~~l~--~--------------~d~i~~~ig~~~~~-----------~~~~stfS~g~~-rl~~~~~l~~~~ 432 (623)
-.++||++. .++ + +.+.+...++.+.+ ..+-+.|||||| |+++|++++.+|
T Consensus 1312 i~iVpQdp~-LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~ 1390 (1495)
T PLN03232 1312 LSIIPQSPV-LFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRS 1390 (1495)
T ss_pred cEEECCCCe-eeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 458888752 111 1 22334444544433 334568999999 799999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
++|||||||+++|+.....+.+++.+. . +++|+|++||.++....||+++++++|++...
T Consensus 1391 ~ILILDEATSaLD~~Te~~Iq~~L~~~-~-~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~ 1450 (1495)
T PLN03232 1391 KILVLDEATASVDVRTDSLIQRTIREE-F-KSCTMLVIAHRLNTIIDCDKILVLSSGQVLEY 1450 (1495)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHH-c-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999988888855543 2 37899999999987777999999999998643
No 378
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.78 E-value=2.5e-18 Score=176.04 Aligned_cols=96 Identities=29% Similarity=0.268 Sum_probs=81.9
Q ss_pred HHHHcCCch-hhhcccccccHHHH-HHHHHHHhcCC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcC
Q 006974 398 ILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR---ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTH 472 (623)
Q Consensus 398 i~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~~---~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH 472 (623)
++..+|+.. .+++.+++|||||+ |++++++++.+ |+++||||||+|||+.+...+.. ++..+.+.|.|+|++||
T Consensus 152 ~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~-~L~~l~~~g~tvIiitH 230 (261)
T cd03271 152 TLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLE-VLQRLVDKGNTVVVIEH 230 (261)
T ss_pred HHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeC
Confidence 345678876 57899999999999 89999998875 79999999999999999999999 56667777899999999
Q ss_pred chhHHhhcccccee------eCceEEEe
Q 006974 473 YADLSCLKDKDTRF------ENAATEFS 494 (623)
Q Consensus 473 ~~~l~~~~~~~~~i------~~g~~~~~ 494 (623)
++++...||+++.+ .+|++.+.
T Consensus 231 ~~~~i~~aD~ii~Lgp~~g~~~G~iv~~ 258 (261)
T cd03271 231 NLDVIKCADWIIDLGPEGGDGGGQVVAS 258 (261)
T ss_pred CHHHHHhCCEEEEecCCcCCCCCEEEEe
Confidence 99877789998888 57777654
No 379
>PLN03130 ABC transporter C family member; Provisional
Probab=99.78 E-value=1e-18 Score=217.70 Aligned_cols=167 Identities=13% Similarity=0.114 Sum_probs=130.0
Q ss_pred CCcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhh
Q 006974 324 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK 379 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~ 379 (623)
+|.++++||+++|.+ .+| ++||++++| +.++|+||+||||||+++++ ++..+ +.+
T Consensus 1235 ~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~G-ekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~ 1313 (1622)
T PLN03130 1235 SGSIKFEDVVLRYRPELPPVLHGLSFEISPS-EKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRK 1313 (1622)
T ss_pred CCcEEEEEEEEEeCCCCCceecceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHh
Confidence 357999999999964 245 999999999 99999999999999999999 55432 123
Q ss_pred hceeecCCCCCCcc--H--------------HHHHHHHcCCchhh-----------hcccccccHHHH-HHHHHHHhcCC
Q 006974 380 AGLYLPAKNHPRLP--W--------------FDLILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSR 431 (623)
Q Consensus 380 ~G~~vp~~~~~~l~--~--------------~d~i~~~ig~~~~~-----------~~~~stfS~g~~-rl~~~~~l~~~ 431 (623)
.-.++||++. .++ + +.+.+...++.+.+ ..+-+.|||||| |+++|++++.+
T Consensus 1314 ~IsiVpQdp~-LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~ 1392 (1622)
T PLN03130 1314 VLGIIPQAPV-LFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRR 1392 (1622)
T ss_pred ccEEECCCCc-cccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcC
Confidence 3458888752 111 1 12334444444433 334568999999 79999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
|++|||||||+++|+..-..+.+++.+. . +++|+|+++|.++...-||+++++++|++...
T Consensus 1393 p~ILILDEATSaLD~~Te~~Iq~~I~~~-~-~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~ 1453 (1622)
T PLN03130 1393 SKILVLDEATAAVDVRTDALIQKTIREE-F-KSCTMLIIAHRLNTIIDCDRILVLDAGRVVEF 1453 (1622)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHH-C-CCCEEEEEeCChHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999998888865543 2 37899999999987677999999999998654
No 380
>PTZ00243 ABC transporter; Provisional
Probab=99.78 E-value=1.7e-18 Score=215.29 Aligned_cols=167 Identities=13% Similarity=0.160 Sum_probs=130.4
Q ss_pred CCcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhh
Q 006974 324 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK 379 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~ 379 (623)
.|.|+++||+++|++ ..+ ++||++.+| +.++|+|++|||||||++++ |+..+ +.+
T Consensus 1306 ~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~G-ekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~ 1384 (1560)
T PTZ00243 1306 AGSLVFEGVQMRYREGLPLVLRGVSFRIAPR-EKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRR 1384 (1560)
T ss_pred CCeEEEEEEEEEeCCCCCceeecceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHh
Confidence 357999999999964 334 999999999 99999999999999999999 55532 123
Q ss_pred hceeecCCCCCCcc--H--------------HHHHHHHcCCchhh-----------hcccccccHHHH-HHHHHHHhcCC
Q 006974 380 AGLYLPAKNHPRLP--W--------------FDLILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSR 431 (623)
Q Consensus 380 ~G~~vp~~~~~~l~--~--------------~d~i~~~ig~~~~~-----------~~~~stfS~g~~-rl~~~~~l~~~ 431 (623)
.-.++||++. .++ + +.+++...|+.+.+ ..+-+.||||+| |+++|++++.+
T Consensus 1385 ~I~iVpQdp~-LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~ 1463 (1560)
T PTZ00243 1385 QFSMIPQDPV-LFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKK 1463 (1560)
T ss_pred cceEECCCCc-cccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcC
Confidence 3468898852 111 1 22344555554433 234478999999 79999999985
Q ss_pred -CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 432 -ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 432 -~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
|++|||||||+++|+..-..+...+.+.+ +++|+|+++|..+....||+++++++|++...
T Consensus 1464 ~~~ILlLDEATSaLD~~te~~Iq~~L~~~~--~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~ 1525 (1560)
T PTZ00243 1464 GSGFILMDEATANIDPALDRQIQATVMSAF--SAYTVITIAHRLHTVAQYDKIIVMDHGAVAEM 1525 (1560)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHC--CCCEEEEEeccHHHHHhCCEEEEEECCEEEEE
Confidence 89999999999999999999988655432 36899999999997788999999999998643
No 381
>PLN03130 ABC transporter C family member; Provisional
Probab=99.78 E-value=2.3e-18 Score=214.45 Aligned_cols=168 Identities=15% Similarity=0.148 Sum_probs=131.0
Q ss_pred CcEEEceeeeecCC---ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-------hhceeecCCCCC-
Q 006974 325 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-------KAGLYLPAKNHP- 390 (623)
Q Consensus 325 ~~l~~~~l~~~y~~---~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-------~~G~~vp~~~~~- 390 (623)
+.++++|++++|++ .++ ++||++++| +.++|+||+|||||||++++ |...+.. ....|+||++..
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~G-e~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~Lf 691 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVG-SLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIF 691 (1622)
T ss_pred CceEEEeeEEEccCCCCCceeeceeEEecCC-CEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccC
Confidence 46899999999964 344 999999999 99999999999999999999 7776543 123588887521
Q ss_pred CccH--------------HHHHHHHcCCchhh-----------hcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCC
Q 006974 391 RLPW--------------FDLILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (623)
Q Consensus 391 ~l~~--------------~d~i~~~ig~~~~~-----------~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~gl 444 (623)
.-++ +++++...++.+++ ...-.+||||+| |+++|+++..+|+++||||||+++
T Consensus 692 ngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSAL 771 (1622)
T PLN03130 692 NATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSAL 771 (1622)
T ss_pred CCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCcccc
Confidence 0011 33344444443333 344568999999 899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 445 DPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 445 D~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
|+..+..+...++..+. ++.|+|++||.......+|+++.+++|++...
T Consensus 772 D~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~ 820 (1622)
T PLN03130 772 DAHVGRQVFDKCIKDEL-RGKTRVLVTNQLHFLSQVDRIILVHEGMIKEE 820 (1622)
T ss_pred CHHHHHHHHHHHhhHHh-cCCEEEEEECCHhHHHhCCEEEEEeCCEEEEe
Confidence 99999888765555433 47899999999998888999999999998654
No 382
>PLN03232 ABC transporter C family member; Provisional
Probab=99.78 E-value=1.8e-18 Score=215.08 Aligned_cols=167 Identities=15% Similarity=0.135 Sum_probs=130.6
Q ss_pred CcEEEceeeeecCC---ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-------hhceeecCCCCCC
Q 006974 325 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-------KAGLYLPAKNHPR 391 (623)
Q Consensus 325 ~~l~~~~l~~~y~~---~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-------~~G~~vp~~~~~~ 391 (623)
+.++++|++++|++ .++ ++||++++| +.++|+||+|||||||++++ |...+.. ....|+||+.. -
T Consensus 613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~G-e~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~-L 690 (1495)
T PLN03232 613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVG-SLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSW-I 690 (1495)
T ss_pred CcEEEEeeEEEcCCCCCCceeeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccc-c
Confidence 46899999999964 344 999999999 99999999999999999999 6665432 23358888752 1
Q ss_pred c--cH--------------HHHHHHHcCCchhh-----------hcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCC
Q 006974 392 L--PW--------------FDLILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 443 (623)
Q Consensus 392 l--~~--------------~d~i~~~ig~~~~~-----------~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~g 443 (623)
+ ++ +.+++...++.+++ ..+-.+|||||| |+++|+++..+|+++||||||++
T Consensus 691 f~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSa 770 (1495)
T PLN03232 691 FNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSA 770 (1495)
T ss_pred ccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 1 11 23344444444333 234457999999 89999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 444 TDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 444 lD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
+|+..+..+.+.++.... ++.|+|++||.......+|+++.+++|++...
T Consensus 771 LD~~t~~~I~~~~l~~~l-~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~ 820 (1495)
T PLN03232 771 LDAHVAHQVFDSCMKDEL-KGKTRVLVTNQLHFLPLMDRIILVSEGMIKEE 820 (1495)
T ss_pred cCHHHHHHHHHHHhhhhh-cCCEEEEEECChhhHHhCCEEEEEeCCEEEEe
Confidence 999999988776655433 46899999999988888999999999988654
No 383
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.78 E-value=2.4e-18 Score=213.69 Aligned_cols=166 Identities=18% Similarity=0.192 Sum_probs=130.4
Q ss_pred CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh------------------hhhhc
Q 006974 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAG 381 (623)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~------------------~a~~G 381 (623)
|.++++||+++|+. ..+ ++||++.+| +.++|+|++|||||||++++ |+... +.+.-
T Consensus 1216 g~I~f~nVs~~Y~~~~~~vL~~is~~I~~G-ekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~i 1294 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAGRAVLQDLSFSVEGG-QRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAF 1294 (1490)
T ss_pred CeEEEEEEEEEeCCCCcceeeccEEEEcCC-CEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhce
Confidence 57999999999964 445 999999999 99999999999999999999 66531 12233
Q ss_pred eeecCCCCCCcc--H--------------HHHHHHHcCCchhhhc-----------ccccccHHHH-HHHHHHHhcCCCc
Q 006974 382 LYLPAKNHPRLP--W--------------FDLILADIGDHQSLEQ-----------NLSTFSGHIS-RIVDILELVSRES 433 (623)
Q Consensus 382 ~~vp~~~~~~l~--~--------------~d~i~~~ig~~~~~~~-----------~~stfS~g~~-rl~~~~~l~~~~~ 433 (623)
.++||++. .++ + +.+++...++.+.+.+ .-..||||++ ++++|++++.+|+
T Consensus 1295 s~IpQdp~-LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ 1373 (1490)
T TIGR01271 1295 GVIPQKVF-IFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAK 1373 (1490)
T ss_pred EEEeCCCc-cCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCC
Confidence 58898862 221 1 2234555665544332 3357999999 7999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 434 LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
+|||||||+++|+..-..+...+.+.. .++|+|++||.++....+|+++++++|++...
T Consensus 1374 ILlLDEaTS~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~ 1432 (1490)
T TIGR01271 1374 ILLLDEPSAHLDPVTLQIIRKTLKQSF--SNCTVILSEHRVEALLECQQFLVIEGSSVKQY 1432 (1490)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999888888555432 36899999999987777999999999998643
No 384
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.77 E-value=1.8e-18 Score=215.36 Aligned_cols=169 Identities=14% Similarity=0.103 Sum_probs=129.3
Q ss_pred CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------hhceeecCCCCC-Cc
Q 006974 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------KAGLYLPAKNHP-RL 392 (623)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------~~G~~vp~~~~~-~l 392 (623)
+.++++|+++.|++ .++ ++||++++| ++++|+|||||||||||+++ |+..+.. ....|+||+... ..
T Consensus 635 ~~i~~~~~~~~~~~~~~~~l~~isl~i~~G-~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~ 713 (1522)
T TIGR00957 635 NSITVHNATFTWARDLPPTLNGITFSIPEG-ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQND 713 (1522)
T ss_pred CcEEEEEeEEEcCCCCCceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCC
Confidence 36899999999974 334 999999999 99999999999999999999 7665421 122578887421 01
Q ss_pred cHH--------------HHHHHHcCC-----------chhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCH
Q 006974 393 PWF--------------DLILADIGD-----------HQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP 446 (623)
Q Consensus 393 ~~~--------------d~i~~~ig~-----------~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~ 446 (623)
++. +++....++ ...+.....+|||||+ |+++|+++..+|+++||||||+++|+
T Consensus 714 Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~ 793 (1522)
T TIGR00957 714 SLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 793 (1522)
T ss_pred cHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 112 222222222 1234456789999999 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-hcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 447 SEGVALATSILQYL-RDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 447 ~~~~~l~~all~~l-~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
.....+...+.... ..++.|+|++||+.+....||+++.+.+|++...
T Consensus 794 ~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~ 842 (1522)
T TIGR00957 794 HVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEM 842 (1522)
T ss_pred HHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEee
Confidence 99999998766421 1236899999999987677999999999988654
No 385
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.77 E-value=4.5e-18 Score=177.18 Aligned_cols=169 Identities=17% Similarity=0.129 Sum_probs=132.1
Q ss_pred CCcEEEceeeeecCC------------ccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------
Q 006974 324 NSEMTVGSLSKGISD------------FPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------- 376 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~------------~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~------------- 376 (623)
...++.++|...|.- +.| ++||++.+| +.++|+|.+|||||||=.++ .|+..
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~g-qTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRG-QTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCC-CeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccc
Confidence 456888888887731 113 899999999 99999999999999998877 45431
Q ss_pred --------hhhhceeecCCCCCCccH---------------------------HHHHHHHcCCc-hhhhcccccccHHHH
Q 006974 377 --------MSKAGLYLPAKNHPRLPW---------------------------FDLILADIGDH-QSLEQNLSTFSGHIS 420 (623)
Q Consensus 377 --------~a~~G~~vp~~~~~~l~~---------------------------~d~i~~~ig~~-~~~~~~~stfS~g~~ 420 (623)
+.+---.|+++++..+++ +-..+..+|++ ...++++..||||++
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQR 432 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQR 432 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchh
Confidence 111123456655433322 12345667754 568899999999999
Q ss_pred -HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 421 -RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 421 -rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|+++|++++.+|++++|||||+.||..-...+.. ++..|.+ .+.+-+|+|||+. +..+|++++++.+|+++..
T Consensus 433 QRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~-LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~ 508 (534)
T COG4172 433 QRIAIARALILKPELILLDEPTSALDRSVQAQVLD-LLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQ 508 (534)
T ss_pred hHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHH-HHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeee
Confidence 8999999999999999999999999999999999 6666654 5778999999998 6789999999999998765
No 386
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=8.1e-19 Score=183.33 Aligned_cols=153 Identities=23% Similarity=0.318 Sum_probs=116.5
Q ss_pred cEEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCC------CCccHHH
Q 006974 326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH------PRLPWFD 396 (623)
Q Consensus 326 ~l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~------~~l~~~d 396 (623)
++-+.+|+|.|. .+++ .++|-|+-. ..++|+||||.||||||+.+ .|-+-|..|. ..+++||
T Consensus 586 vLGlH~VtFgy~gqkpLFkkldFGiDmd-SRiaIVGPNGVGKSTlLkLL--------~Gkl~P~~GE~RKnhrL~iG~Fd 656 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQKPLFKKLDFGIDMD-SRIAIVGPNGVGKSTLLKLL--------IGKLDPNDGELRKNHRLRIGWFD 656 (807)
T ss_pred eeecccccccCCCCCchhhccccccccc-ceeEEECCCCccHHHHHHHH--------hcCCCCCcchhhccceeeeechh
Confidence 456789999994 4444 888888877 78999999999999999999 7766676652 2345555
Q ss_pred HH-----------------------------HHHcCCchhh-hcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCC
Q 006974 397 LI-----------------------------LADIGDHQSL-EQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 445 (623)
Q Consensus 397 ~i-----------------------------~~~ig~~~~~-~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD 445 (623)
+- +-.+|+.... .-.+..||||++ |++++--.+..|+++||||||++||
T Consensus 657 Qh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLD 736 (807)
T KOG0066|consen 657 QHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLD 736 (807)
T ss_pred hhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcc
Confidence 32 2233333222 235778999999 9999888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEcCchhH-HhhccccceeeCceE
Q 006974 446 PSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAAT 491 (623)
Q Consensus 446 ~~~~~~l~~all~~l~~~~~~vii~TH~~~l-~~~~~~~~~i~~g~~ 491 (623)
..+..+|+.||-+| ++.||++|||..+ ...-...|++.+..+
T Consensus 737 IESIDALaEAIney----~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 737 IESIDALAEAINEY----NGGVIMVSHDERLIVETDCNLWVVENQGI 779 (807)
T ss_pred hhhHHHHHHHHHhc----cCcEEEEecccceeeecCceEEEEccCCh
Confidence 99999999998888 8899999999663 333334566666544
No 387
>PTZ00243 ABC transporter; Provisional
Probab=99.76 E-value=3e-18 Score=213.13 Aligned_cols=158 Identities=16% Similarity=0.189 Sum_probs=121.1
Q ss_pred ecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------hhhceeecCCCCC-CccHHHH-------
Q 006974 335 GISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------SKAGLYLPAKNHP-RLPWFDL------- 397 (623)
Q Consensus 335 ~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------a~~G~~vp~~~~~-~l~~~d~------- 397 (623)
.++++.+ ++||++++| ++++|+|||||||||||+++ |++.+. .+...|+||.... ..++.++
T Consensus 669 ~~~~~~iL~~isl~i~~G-~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~ 747 (1560)
T PTZ00243 669 ELEPKVLLRDVSVSVPRG-KLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEE 747 (1560)
T ss_pred ccCCceeEeeeEEEECCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChh
Confidence 3344444 999999999 99999999999999999999 766542 1223578887421 1111121
Q ss_pred -------HH---------HHc--CCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006974 398 -------IL---------ADI--GDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQ 458 (623)
Q Consensus 398 -------i~---------~~i--g~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~ 458 (623)
++ ..+ |+...+.....+|||||+ |+++|++++.+|+++|||||+++||+..+..+...++.
T Consensus 748 ~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~ 827 (1560)
T PTZ00243 748 DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFL 827 (1560)
T ss_pred hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 11 122 444556778899999999 89999999999999999999999999998888765543
Q ss_pred HHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 459 YLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 459 ~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
... .+.|+|++||+.++...||+++.+.+|++.+.
T Consensus 828 ~~~-~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~ 862 (1560)
T PTZ00243 828 GAL-AGKTRVLATHQVHVVPRADYVVALGDGRVEFS 862 (1560)
T ss_pred Hhh-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEe
Confidence 332 47899999999997788999999999998765
No 388
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.76 E-value=3.1e-18 Score=213.21 Aligned_cols=167 Identities=10% Similarity=0.046 Sum_probs=129.4
Q ss_pred CCcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhh
Q 006974 324 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK 379 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~ 379 (623)
+|.++++||+++|++ ..+ ++||++++| +.++|+||+|||||||++++ ++..+ +.+
T Consensus 1282 ~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~G-ekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~ 1360 (1522)
T TIGR00957 1282 RGRVEFRNYCLRYREDLDLVLRHINVTIHGG-EKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRF 1360 (1522)
T ss_pred CCcEEEEEEEEEeCCCCcccccceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHh
Confidence 357999999999964 345 999999999 99999999999999999999 55432 123
Q ss_pred hceeecCCCCCCcc--H--------------HHHHHHHcCCchhh-----------hcccccccHHHH-HHHHHHHhcCC
Q 006974 380 AGLYLPAKNHPRLP--W--------------FDLILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSR 431 (623)
Q Consensus 380 ~G~~vp~~~~~~l~--~--------------~d~i~~~ig~~~~~-----------~~~~stfS~g~~-rl~~~~~l~~~ 431 (623)
.-.++||++. .++ + +.+.+...++.+.+ ..+-+.||||++ |+++|++++.+
T Consensus 1361 ~i~iVpQdp~-LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1439 (1522)
T TIGR00957 1361 KITIIPQDPV-LFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRK 1439 (1522)
T ss_pred cCeEECCCCc-ccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcC
Confidence 3458888852 111 0 12334444444332 234467999999 79999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
|++|||||||+++|+..-..+.+++.+.. +++|+|+++|..+....+|+++++++|++...
T Consensus 1440 ~~ILiLDEaTSalD~~Te~~Iq~~l~~~~--~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~ 1500 (1522)
T TIGR00957 1440 TKILVLDEATAAVDLETDNLIQSTIRTQF--EDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEF 1500 (1522)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999888887554432 36899999999997778999999999998644
No 389
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.76 E-value=3.1e-18 Score=212.67 Aligned_cols=166 Identities=17% Similarity=0.103 Sum_probs=124.1
Q ss_pred cEEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhh------hceeecCCCCC-CccHHH
Q 006974 326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK------AGLYLPAKNHP-RLPWFD 396 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~------~G~~vp~~~~~-~l~~~d 396 (623)
.++++|+++.+. ..+ ++||++++| ++++|+|||||||||||+++ |+..+... ...|+|+.... ..++.+
T Consensus 428 ~~~~~~~s~~~~-~~l~~i~l~i~~G-~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~e 505 (1490)
T TIGR01271 428 GLFFSNFSLYVT-PVLKNISFKLEKG-QLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKD 505 (1490)
T ss_pred cccccccccccC-cceeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHH
Confidence 456667766532 123 999999999 99999999999999999999 77654321 12478887521 012223
Q ss_pred HH--------------HHHcCCchh-----------hhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHH
Q 006974 397 LI--------------LADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGV 450 (623)
Q Consensus 397 ~i--------------~~~ig~~~~-----------~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~ 450 (623)
++ +...++.+. +.....+|||||+ |+++|++++.+|+++|||||++++|+..+.
T Consensus 506 NI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~ 585 (1490)
T TIGR01271 506 NIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEK 585 (1490)
T ss_pred HHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 22 222222222 3345689999999 899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 451 ALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 451 ~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
.+...++..+.+ +.|+|++||+++....||+++.+.+|++...
T Consensus 586 ~i~~~~l~~~~~-~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~ 628 (1490)
T TIGR01271 586 EIFESCLCKLMS-NKTRILVTSKLEHLKKADKILLLHEGVCYFY 628 (1490)
T ss_pred HHHHHHHHHHhc-CCeEEEEeCChHHHHhCCEEEEEECCEEEEE
Confidence 999865554443 7899999999986677999999999988654
No 390
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.76 E-value=7.8e-18 Score=171.02 Aligned_cols=77 Identities=25% Similarity=0.232 Sum_probs=65.0
Q ss_pred hhcccccccHHHH-HHHHHHHhc----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccc
Q 006974 408 LEQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDK 482 (623)
Q Consensus 408 ~~~~~stfS~g~~-rl~~~~~l~----~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~ 482 (623)
.+..+.+||+||+ |++++++++ .+|+++|+||||+|+||.....+...+ ..+.+ +.++|++||..++..+||+
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l-~~~~~-~~~ii~~~h~~~~~~~~d~ 229 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMI-KELSD-GAQFITTTFRPELLEVADK 229 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHH-HHHhC-CCEEEEEecCHHHHhhCCE
Confidence 3568899999999 799998885 468999999999999999999999854 44555 6788999999888889998
Q ss_pred ccee
Q 006974 483 DTRF 486 (623)
Q Consensus 483 ~~~i 486 (623)
++.+
T Consensus 230 i~~l 233 (243)
T cd03272 230 FYGV 233 (243)
T ss_pred EEEE
Confidence 8764
No 391
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.75 E-value=4.2e-18 Score=169.85 Aligned_cols=151 Identities=17% Similarity=0.164 Sum_probs=102.7
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhh------hhh-hhhceeecCCCCC-------
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLA------SLM-SKAGLYLPAKNHP------- 390 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~------~~~-a~~G~~vp~~~~~------- 390 (623)
++++|.- +|++..+ ++++ ++++|+|||||||||+|++|..+ ... .+.| ++|+....
T Consensus 6 l~l~nfk-~~~~~~~l~~~~~------~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~~~~~i~-~~~~~~~~~~~~~~~ 77 (212)
T cd03274 6 LVLENFK-SYAGEQVIGPFHK------SFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLS-DLIHNSAGHPNLDSC 77 (212)
T ss_pred EEEECcc-cCCCCeeeccCCC------CeEEEECCCCCCHHHHHHHHHHHhccCHHHhhhhhHH-HHhcCCCCCCCCceE
Confidence 3444544 5655444 5554 58999999999999999998322 011 1122 22332200
Q ss_pred -------Cc---cH----------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhc----CCCcEEEEeC
Q 006974 391 -------RL---PW----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV----SRESLVLIDE 439 (623)
Q Consensus 391 -------~l---~~----------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~----~~~~LlLLDE 439 (623)
.+ +. ...+...+++.+..++.++.||+||+ ++.++++++ .+|+++++||
T Consensus 78 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDE 157 (212)
T cd03274 78 SVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDE 157 (212)
T ss_pred EEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcC
Confidence 00 00 01122334455566778899999999 788888775 3589999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceee
Q 006974 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 487 (623)
Q Consensus 440 p~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~ 487 (623)
||+|+||.....+.. ++..+.+ +.++|++||+.++..+||+++.+.
T Consensus 158 Pt~gLD~~~~~~l~~-~l~~~~~-~~~~iivs~~~~~~~~~d~v~~~~ 203 (212)
T cd03274 158 IDAALDFRNVSIVAN-YIKERTK-NAQFIVISLRNNMFELADRLVGIY 203 (212)
T ss_pred CCcCCCHHHHHHHHH-HHHHHcC-CCEEEEEECcHHHHHhCCEEEEEE
Confidence 999999999999998 4555554 578999999988889999887653
No 392
>PLN03140 ABC transporter G family member; Provisional
Probab=99.74 E-value=5.4e-18 Score=208.63 Aligned_cols=151 Identities=18% Similarity=0.225 Sum_probs=118.3
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhceeecCCCC--CCccH-----
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLYLPAKNH--PRLPW----- 394 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~~vp~~~~--~~l~~----- 394 (623)
++|+.+.+| ++++|+||||||||||||++ |.+... .+...|+|+... ..+++
T Consensus 183 ~vs~~i~~G-e~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~ 261 (1470)
T PLN03140 183 DASGIIKPS-RMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLD 261 (1470)
T ss_pred CCeEEEeCC-eEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHH
Confidence 999999999 99999999999999999999 665321 012246666531 11111
Q ss_pred --------------------------------------------------HHHHHHHcCCchhh-----hcccccccHHH
Q 006974 395 --------------------------------------------------FDLILADIGDHQSL-----EQNLSTFSGHI 419 (623)
Q Consensus 395 --------------------------------------------------~d~i~~~ig~~~~~-----~~~~stfS~g~ 419 (623)
.+.++..+|+.+.. +..+..+||||
T Consensus 262 f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGe 341 (1470)
T PLN03140 262 FSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQ 341 (1470)
T ss_pred HHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCccc
Confidence 13345556665433 45668999999
Q ss_pred H-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCch--hHHhhccccceeeCceEEEe
Q 006974 420 S-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYA--DLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 420 ~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~--~l~~~~~~~~~i~~g~~~~~ 494 (623)
| |+.++.+++.+|+++++||||+|||+.....+... ++.+.+ .|.|+|++||+. ++..++|++..+.+|++.+.
T Consensus 342 rkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~-Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~ 419 (1470)
T PLN03140 342 KKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKC-LQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQ 419 (1470)
T ss_pred ceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHH-HHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEe
Confidence 9 89999999999999999999999999999999994 455554 588999999985 57789999999999998876
No 393
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.73 E-value=1e-17 Score=174.03 Aligned_cols=160 Identities=19% Similarity=0.276 Sum_probs=129.6
Q ss_pred cEEEceeeeecCCc-c-c-cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCcc---------
Q 006974 326 EMTVGSLSKGISDF-P-V-PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP--------- 393 (623)
Q Consensus 326 ~l~~~~l~~~y~~~-~-v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~--------- 393 (623)
.++++||.+.|.+. + + |+++++.+| +++-|+|.||||||||++.+ .|.|.|++|...+.
T Consensus 322 ~lelrnvrfay~~~~FhvgPiNl~ikrG-elvFliG~NGsGKST~~~LL--------tGL~~PqsG~I~ldg~pV~~e~l 392 (546)
T COG4615 322 TLELRNVRFAYQDNAFHVGPINLTIKRG-ELVFLIGGNGSGKSTLAMLL--------TGLYQPQSGEILLDGKPVSAEQL 392 (546)
T ss_pred ceeeeeeeeccCcccceecceeeEEecC-cEEEEECCCCCcHHHHHHHH--------hcccCCCCCceeECCccCCCCCH
Confidence 48899999999764 2 4 999999999 99999999999999999999 88888888742221
Q ss_pred -----HHHHHHHHcCC-------ch-----hh----------------hc--ccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974 394 -----WFDLILADIGD-------HQ-----SL----------------EQ--NLSTFSGHIS-RIVDILELVSRESLVLI 437 (623)
Q Consensus 394 -----~~d~i~~~ig~-------~~-----~~----------------~~--~~stfS~g~~-rl~~~~~l~~~~~LlLL 437 (623)
.|..+|++..+ ++ .+ +. ..-.||.|+| |++.+.+++.+++++++
T Consensus 393 edYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~ 472 (546)
T COG4615 393 EDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVL 472 (546)
T ss_pred HHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEe
Confidence 13333332211 11 00 11 2346789999 99999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 438 DEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
||=.+..||.-+..+...++-.++++|+||+.+|||-.-...+|+...++||.+...
T Consensus 473 DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 473 DEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred ehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 999999999999999999999999999999999999777778899999999987643
No 394
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.73 E-value=2.2e-17 Score=155.66 Aligned_cols=167 Identities=19% Similarity=0.159 Sum_probs=129.9
Q ss_pred EEEceeeeecCCc----------cc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------
Q 006974 327 MTVGSLSKGISDF----------PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------- 377 (623)
Q Consensus 327 l~~~~l~~~y~~~----------~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------- 377 (623)
++++|++|.|... .| ++||+++.| +.++|+|.||||||||.|++ |.+.+-
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~-QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~ 83 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREG-QTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYS 83 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCC-cEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchH
Confidence 4567788777321 23 999999999 89999999999999999999 665431
Q ss_pred --hhhceeecCCCCCCccH-----------------------HHHH---HHHcCC-chhhhcccccccHHHH-HHHHHHH
Q 006974 378 --SKAGLYLPAKNHPRLPW-----------------------FDLI---LADIGD-HQSLEQNLSTFSGHIS-RIVDILE 427 (623)
Q Consensus 378 --a~~G~~vp~~~~~~l~~-----------------------~d~i---~~~ig~-~~~~~~~~stfS~g~~-rl~~~~~ 427 (623)
++..-.++++++..+.+ -.+| +..+|+ .|..+-++..+|.|++ |+++|++
T Consensus 84 ~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARA 163 (267)
T COG4167 84 FRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARA 163 (267)
T ss_pred hhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHH
Confidence 22223444444322222 1122 345664 4667788999999999 8999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
++-+|+++|.||..++||..-+..|....++.-.+.|...|.+|.+.. ++.++|.++++..|.|+..
T Consensus 164 LIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~ 231 (267)
T COG4167 164 LILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVER 231 (267)
T ss_pred HhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeec
Confidence 999999999999999999999999999777755566888888888877 7889999999999998765
No 395
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.73 E-value=8.7e-18 Score=166.61 Aligned_cols=142 Identities=20% Similarity=0.128 Sum_probs=97.0
Q ss_pred cccccCCceEEEEEcCCCCCHHHHHHHHh-----hhhhhh-------h---------hceeecCCC-CC------CccHH
Q 006974 344 DIKVECETRVVVITGPNTGGKTASMKTLG-----LASLMS-------K---------AGLYLPAKN-HP------RLPWF 395 (623)
Q Consensus 344 ~l~l~~g~~~~~I~GpNgsGKSTlLk~ig-----l~~~~a-------~---------~G~~vp~~~-~~------~l~~~ 395 (623)
++++.+| +++|+||||+||||||++|. ....-. + ...++++.. .. .+.++
T Consensus 17 ~l~~~~g--~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~ 94 (204)
T cd03240 17 EIEFFSP--LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAIL 94 (204)
T ss_pred EEecCCC--eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHh
Confidence 4556666 99999999999999999982 221100 0 001222222 01 11233
Q ss_pred HHHHHH--cCCchhhhcccccccHHHHH-------HHHHHHhcCCCcEEEEeCCCCCCCHHHHH-HHHHHHHHHHhcC-C
Q 006974 396 DLILAD--IGDHQSLEQNLSTFSGHISR-------IVDILELVSRESLVLIDEIGSGTDPSEGV-ALATSILQYLRDR-V 464 (623)
Q Consensus 396 d~i~~~--ig~~~~~~~~~stfS~g~~r-------l~~~~~l~~~~~LlLLDEp~~glD~~~~~-~l~~all~~l~~~-~ 464 (623)
+++... -.....+++.+++||+|+++ ++++++++.+|+++|+|||++|+|+.... .+.. ++..+.+. +
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~-~l~~~~~~~~ 173 (204)
T cd03240 95 ENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAE-IIEERKSQKN 173 (204)
T ss_pred hceeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHH-HHHHHHhccC
Confidence 333110 01123457789999999995 45667788999999999999999999999 8888 55556655 7
Q ss_pred cEEEEEcCchhHHhhccccceeeC
Q 006974 465 GLAVVTTHYADLSCLKDKDTRFEN 488 (623)
Q Consensus 465 ~~vii~TH~~~l~~~~~~~~~i~~ 488 (623)
.++|++||+.++...|++++.+..
T Consensus 174 ~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 174 FQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred CEEEEEEecHHHHhhCCEEEEEee
Confidence 899999999987778887776643
No 396
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.5e-17 Score=177.93 Aligned_cols=156 Identities=19% Similarity=0.227 Sum_probs=121.3
Q ss_pred cEEEceeeeecCCcc--c--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCC------CCCccH-
Q 006974 326 EMTVGSLSKGISDFP--V--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKN------HPRLPW- 394 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~--v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~------~~~l~~- 394 (623)
.+++.+|++.|.... + .+++..+.. ..++++|+||.||||++|++ .|-.-|..+ ...+.+
T Consensus 362 ~l~i~~V~f~y~p~~y~~~~~~~~d~e~~-sRi~~vg~ng~gkst~lKi~--------~~~l~~~rgi~~~~~r~ri~~f 432 (582)
T KOG0062|consen 362 NLRISYVAFEYTPSEYQWRKQLGLDRESD-SRISRVGENGDGKSTLLKIL--------KGDLTPTRGIVGRHPRLRIKYF 432 (582)
T ss_pred eeEEEeeeccCCCcchhhhhccCCccchh-hhhheeccCchhHHHHHHHH--------hccCCcccceeeecccceecch
Confidence 467888999995433 3 666666666 67899999999999999999 222222211 011111
Q ss_pred -----------------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCC
Q 006974 395 -----------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 443 (623)
Q Consensus 395 -----------------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~g 443 (623)
+..-+.++|+. +...+++.+||||++ |+++|.....+|.||+||||||+
T Consensus 433 ~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNh 512 (582)
T KOG0062|consen 433 AQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNH 512 (582)
T ss_pred hHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCcc
Confidence 22346677865 445667899999999 99999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 444 TDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 444 lD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
||..+-.+|+.|+-.+ ++.||++|||.+ +..+|...|++.+|+|.-.
T Consensus 513 LD~dsl~AL~~Al~~F----~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~i 560 (582)
T KOG0062|consen 513 LDRDSLGALAKALKNF----NGGVVLVSHDEEFISSLCKELWVVEDGKVTPI 560 (582)
T ss_pred ccHHHHHHHHHHHHhc----CCcEEEEECcHHHHhhcCceeEEEcCCcEEee
Confidence 9999999999987776 888999999988 5679999999999998753
No 397
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.72 E-value=5.6e-17 Score=184.91 Aligned_cols=151 Identities=23% Similarity=0.315 Sum_probs=124.9
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhhhceeecCCCCCCcc--------
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLYLPAKNHPRLP-------- 393 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~~G~~vp~~~~~~l~-------- 393 (623)
+++..+.+| ++++|.||.||||||||+++ |-..- +.+.-.||+|+. ..+|
T Consensus 48 ~vsg~~~~G-el~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD-~l~~~LTV~EtL 125 (613)
T KOG0061|consen 48 GVSGTAKPG-ELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDD-VLLPTLTVRETL 125 (613)
T ss_pred CcEEEEecC-eEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccc-cccccccHHHHH
Confidence 999999999 99999999999999999999 33321 123345788764 2111
Q ss_pred -------------------HHHHHHHHcCCchhhhcccc-----cccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHH
Q 006974 394 -------------------WFDLILADIGDHQSLEQNLS-----TFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 448 (623)
Q Consensus 394 -------------------~~d~i~~~ig~~~~~~~~~s-----tfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~ 448 (623)
.++.++..+|+.+-.+..++ .+|||++ |++.+..++++|+++++||||+|||...
T Consensus 126 ~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~s 205 (613)
T KOG0061|consen 126 RFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFS 205 (613)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhh
Confidence 15678888998876666665 4999999 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcCchh--HHhhccccceeeCceEEEec
Q 006974 449 GVALATSILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFENAATEFSL 495 (623)
Q Consensus 449 ~~~l~~all~~l~~~~~~vii~TH~~~--l~~~~~~~~~i~~g~~~~~~ 495 (623)
...+.+ +++.+++.|.|||+|=|.+. +-.+-|+...+.+|++.|..
T Consensus 206 A~~vv~-~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 206 ALQVVQ-LLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred HHHHHH-HHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 999999 66667777999999999964 77888999999999988874
No 398
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.72 E-value=7.6e-18 Score=157.80 Aligned_cols=152 Identities=18% Similarity=0.251 Sum_probs=116.1
Q ss_pred ccccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh------------------hhhhceeecCCCC--CCcc------
Q 006974 341 VPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAGLYLPAKNH--PRLP------ 393 (623)
Q Consensus 341 v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~------------------~a~~G~~vp~~~~--~~l~------ 393 (623)
.|++..+..| +++-++||||+||||||-.+ |++.. +|+.-.|..+... ..++
T Consensus 16 ~plS~qv~aG-e~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~ 94 (248)
T COG4138 16 GPLSGEVRAG-EILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLT 94 (248)
T ss_pred cccccccccc-eEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhh
Confidence 3899999999 99999999999999999888 55532 1221222222111 1122
Q ss_pred ----------HHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhc-------CCCcEEEEeCCCCCCCHHHHHHHHHH
Q 006974 394 ----------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV-------SRESLVLIDEIGSGTDPSEGVALATS 455 (623)
Q Consensus 394 ----------~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~-------~~~~LlLLDEp~~glD~~~~~~l~~a 455 (623)
.++.|...+++.|.+.+.++.||||+- |+.++.... ....|+|+|||.++||.....++-.
T Consensus 95 L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdr- 173 (248)
T COG4138 95 LHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDR- 173 (248)
T ss_pred hcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHH-
Confidence 245667778899999999999999998 676665422 2346999999999999998888876
Q ss_pred HHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 456 ILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 456 ll~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
++..+...|.+||+++||.+ -..-+++.+.+..|.+...
T Consensus 174 ll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~ 213 (248)
T COG4138 174 LLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLAS 213 (248)
T ss_pred HHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEee
Confidence 88889999999999999987 5577888888888877554
No 399
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.72 E-value=8.5e-17 Score=164.54 Aligned_cols=79 Identities=14% Similarity=0.118 Sum_probs=66.3
Q ss_pred hhhhcccccccHHHH-HHHHHHHhc----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhc
Q 006974 406 QSLEQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLK 480 (623)
Q Consensus 406 ~~~~~~~stfS~g~~-rl~~~~~l~----~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~ 480 (623)
+..+..+..||+|++ +++++++++ .+|+++|+||||+|+|+.....+.. ++..+.+ |.++|++||+.++...|
T Consensus 158 ~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~-~l~~~~~-g~~ii~iSH~~~~~~~~ 235 (251)
T cd03273 158 GVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGR-MIKTHFK-GSQFIVVSLKEGMFNNA 235 (251)
T ss_pred HhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHcC-CCEEEEEECCHHHHHhC
Confidence 445678999999999 788888776 6789999999999999999999999 4444544 78999999998888889
Q ss_pred ccccee
Q 006974 481 DKDTRF 486 (623)
Q Consensus 481 ~~~~~i 486 (623)
|+++.+
T Consensus 236 d~v~~~ 241 (251)
T cd03273 236 NVLFRT 241 (251)
T ss_pred CEEEEE
Confidence 987654
No 400
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.71 E-value=6.1e-17 Score=165.24 Aligned_cols=76 Identities=12% Similarity=0.092 Sum_probs=64.6
Q ss_pred cccccccHHHH-HHHHHHHhcC----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccc
Q 006974 410 QNLSTFSGHIS-RIVDILELVS----RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDT 484 (623)
Q Consensus 410 ~~~stfS~g~~-rl~~~~~l~~----~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~ 484 (623)
..+..||+|++ ++.++++++. +|+++|||||++|+|+.....+.. ++..+.+.|.++|++||+.++...||+++
T Consensus 151 ~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~-~i~~~~~~g~~vi~isH~~~~~~~~d~i~ 229 (247)
T cd03275 151 RDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVAS-YIREQAGPNFQFIVISLKEEFFSKADALV 229 (247)
T ss_pred hhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHH-HHHHhccCCcEEEEEECCHHHHhhCCeEE
Confidence 34589999999 7888888765 489999999999999999999998 55556666889999999988888899876
Q ss_pred ee
Q 006974 485 RF 486 (623)
Q Consensus 485 ~i 486 (623)
.+
T Consensus 230 ~~ 231 (247)
T cd03275 230 GV 231 (247)
T ss_pred EE
Confidence 65
No 401
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.71 E-value=2.6e-17 Score=202.94 Aligned_cols=151 Identities=17% Similarity=0.153 Sum_probs=118.1
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh----h-----------h---h----hhceeecCCCC--CCccH--
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS----L-----------M---S----KAGLYLPAKNH--PRLPW-- 394 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~----~-----------~---a----~~G~~vp~~~~--~~l~~-- 394 (623)
++|+.+.+| ++++|+||||||||||||+| |+.. . + . +...|+|+... ..+++
T Consensus 79 ~vs~~i~~G-e~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E 157 (1394)
T TIGR00956 79 PMDGLIKPG-ELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGE 157 (1394)
T ss_pred CCEEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHH
Confidence 899999999 99999999999999999999 6531 1 0 0 11346777531 11111
Q ss_pred ---------------------------HHHHHHHcCCchhhhcc-----cccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974 395 ---------------------------FDLILADIGDHQSLEQN-----LSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (623)
Q Consensus 395 ---------------------------~d~i~~~ig~~~~~~~~-----~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~ 441 (623)
.+.++..+|+.+..+.. +..|||||| |++++.+++.+|++++|||||
T Consensus 158 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPT 237 (1394)
T TIGR00956 158 TLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNAT 237 (1394)
T ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCC
Confidence 12345667776655443 567999999 899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCch--hHHhhccccceeeCceEEEe
Q 006974 442 SGTDPSEGVALATSILQYLRD-RVGLAVVTTHYA--DLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 442 ~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~--~l~~~~~~~~~i~~g~~~~~ 494 (623)
+|||+.....+.. +++.+.+ .|.|+|++||+. ++..++|++..+.+|++.+.
T Consensus 238 sgLD~~~~~~i~~-~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~ 292 (1394)
T TIGR00956 238 RGLDSATALEFIR-ALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYF 292 (1394)
T ss_pred CCcCHHHHHHHHH-HHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEE
Confidence 9999999999999 5556665 488999999995 37789999999999998776
No 402
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.70 E-value=5.4e-17 Score=171.95 Aligned_cols=167 Identities=20% Similarity=0.241 Sum_probs=124.2
Q ss_pred CCCcEEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH--------hhhhh-------------hh
Q 006974 323 ENSEMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL--------GLASL-------------MS 378 (623)
Q Consensus 323 g~~~l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i--------gl~~~-------------~a 378 (623)
.+|.++++||++.|+ +++| ++||++.+| +.++|+||+|+||||+||.+ |-|.+ ..
T Consensus 534 ~~G~i~fsnvtF~Y~p~k~vl~disF~v~pG-ktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs 612 (790)
T KOG0056|consen 534 TQGKIEFSNVTFAYDPGKPVLSDISFTVQPG-KTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRS 612 (790)
T ss_pred cCCeEEEEEeEEecCCCCceeecceEEecCC-cEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHH
Confidence 457899999999995 4555 999999999 99999999999999999998 33322 23
Q ss_pred hhceeecCCCCCCccH--H------------H---------HHHHHc-CCch----hhhcccccccHHHH-HHHHHHHhc
Q 006974 379 KAGLYLPAKNHPRLPW--F------------D---------LILADI-GDHQ----SLEQNLSTFSGHIS-RIVDILELV 429 (623)
Q Consensus 379 ~~G~~vp~~~~~~l~~--~------------d---------~i~~~i-g~~~----~~~~~~stfS~g~~-rl~~~~~l~ 429 (623)
++| .|||+. ..+.- + + +|.+++ +..+ .+-..-=.||||+| |++.|+...
T Consensus 613 ~IG-VVPQDt-vLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiL 690 (790)
T KOG0056|consen 613 SIG-VVPQDT-VLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTIL 690 (790)
T ss_pred hcC-cccCcc-eeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHh
Confidence 444 689874 21110 0 1 122221 1222 12222346999999 899999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
..|++++|||.|+.||.....+|-.+ +..+.. +.|.|++-|.+.-.--||.+.++.+|++...
T Consensus 691 K~P~iIlLDEATSALDT~tER~IQaa-L~rlca-~RTtIVvAHRLSTivnAD~ILvi~~G~IvEr 753 (790)
T KOG0056|consen 691 KAPSIILLDEATSALDTNTERAIQAA-LARLCA-NRTTIVVAHRLSTIVNADLILVISNGRIVER 753 (790)
T ss_pred cCCcEEEEcchhhhcCCccHHHHHHH-HHHHhc-CCceEEEeeeehheecccEEEEEeCCeEeec
Confidence 99999999999999999998888774 445555 5688999999876667888999999988654
No 403
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.69 E-value=2.8e-16 Score=155.07 Aligned_cols=145 Identities=17% Similarity=0.136 Sum_probs=95.8
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhh--------------hhhhc------eeecCCCC--C-CccHH--H
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASL--------------MSKAG------LYLPAKNH--P-RLPWF--D 396 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~--------------~a~~G------~~vp~~~~--~-~l~~~--d 396 (623)
+.++.+.+| +.+|+||||+||||+|.++.+... +-+.| ...+..+. . ..... +
T Consensus 14 ~~~l~f~~g--l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 91 (198)
T cd03276 14 HLQIEFGPR--VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQD 91 (198)
T ss_pred eeEEecCCC--eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHH
Confidence 455666666 789999999999999999843210 00001 01111110 0 01111 2
Q ss_pred HHHHHcCCchhhhcccccccHHHH-HHHHHHHh----cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCcEEEE
Q 006974 397 LILADIGDHQSLEQNLSTFSGHIS-RIVDILEL----VSRESLVLIDEIGSGTDPSEGVALATSILQYLRD--RVGLAVV 469 (623)
Q Consensus 397 ~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l----~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~--~~~~vii 469 (623)
++...+...+..++++.+||+||+ ++.+++++ +.+|+++|||||++|+|+.....+...+.+...+ .+.++|+
T Consensus 92 ~~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii 171 (198)
T cd03276 92 MARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFI 171 (198)
T ss_pred HHHHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 222223335556889999999999 68877777 6999999999999999999999999966655444 2358999
Q ss_pred EcCchhHHhhccccceeeC
Q 006974 470 TTHYADLSCLKDKDTRFEN 488 (623)
Q Consensus 470 ~TH~~~l~~~~~~~~~i~~ 488 (623)
+||+++...-.|++.++..
T Consensus 172 ~th~~~~i~~~d~v~~~~~ 190 (198)
T cd03276 172 TPQDISGLASSDDVKVFRM 190 (198)
T ss_pred ECCcccccccccceeEEEe
Confidence 9999885443466555543
No 404
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.67 E-value=2.1e-16 Score=185.18 Aligned_cols=166 Identities=16% Similarity=0.205 Sum_probs=125.6
Q ss_pred CCcEEEceeeeecCCcc---c--cccccccCCceEEEEEcCCCCCHHHHHHHH--------hhhhh-------------h
Q 006974 324 NSEMTVGSLSKGISDFP---V--PIDIKVECETRVVVITGPNTGGKTASMKTL--------GLASL-------------M 377 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~~~---v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i--------gl~~~-------------~ 377 (623)
+|.++++||+|.|+.++ | ++++++..| +.++|+||+||||||.+-++ |-+.+ .
T Consensus 985 ~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~G-qTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR 1063 (1228)
T KOG0055|consen 985 KGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAG-QTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLR 1063 (1228)
T ss_pred eeEEEEeeeEeeCCCCCCchhhcCCcEEecCC-CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHH
Confidence 36799999999997644 4 999999999 89999999999999999888 32221 2
Q ss_pred hhhceeecCCCCCCc--cHHHHHHHH----------------------cCCch----hhhcccccccHHHH-HHHHHHHh
Q 006974 378 SKAGLYLPAKNHPRL--PWFDLILAD----------------------IGDHQ----SLEQNLSTFSGHIS-RIVDILEL 428 (623)
Q Consensus 378 a~~G~~vp~~~~~~l--~~~d~i~~~----------------------ig~~~----~~~~~~stfS~g~~-rl~~~~~l 428 (623)
.++| .|.|++ ..+ +..++|.-- .++.+ .+-..-..||||+| |+++|+++
T Consensus 1064 ~~i~-lVsQEP-~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAi 1141 (1228)
T KOG0055|consen 1064 KQIG-LVSQEP-VLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAI 1141 (1228)
T ss_pred Hhcc-eeccCc-hhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHH
Confidence 2333 566654 111 112222110 01122 22334568999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
+.+|++|||||-|+.||.++-..+-+| ++.... |.|+|+++|.+..-.-||.+.+++||.+...
T Consensus 1142 lRnPkILLLDEATSALDseSErvVQeA-Ld~a~~-gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~ 1205 (1228)
T KOG0055|consen 1142 LRNPKILLLDEATSALDSESERVVQEA-LDRAME-GRTTIVIAHRLSTIQNADVIAVLKNGKVVEQ 1205 (1228)
T ss_pred HcCCCeeeeeccchhhhhhhHHHHHHH-HHHhhc-CCcEEEEecchhhhhcCCEEEEEECCEEEec
Confidence 999999999999999999998888884 554444 6899999999998889999999999998754
No 405
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.67 E-value=3.2e-16 Score=165.56 Aligned_cols=160 Identities=24% Similarity=0.275 Sum_probs=117.0
Q ss_pred EEEceeeeecCCcccccc-ccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhh-----hceeecCCCCCCc-------
Q 006974 327 MTVGSLSKGISDFPVPID-IKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK-----AGLYLPAKNHPRL------- 392 (623)
Q Consensus 327 l~~~~l~~~y~~~~v~i~-l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~-----~G~~vp~~~~~~l------- 392 (623)
++--++.+.||+-...++ =++..| ++++++||||-|||||.|++ |.+.+... ..+|.||--.+.+
T Consensus 343 v~y~~~~k~~g~F~L~V~~G~i~~g-EvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~ 421 (591)
T COG1245 343 VEYPDLKKTYGDFKLEVEEGEIYDG-EVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDL 421 (591)
T ss_pred eecchheeecCceEEEecCCeeecc-eEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHH
Confidence 444566777775333211 234456 99999999999999999999 55554311 1234444211111
Q ss_pred ------------cHHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006974 393 ------------PWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459 (623)
Q Consensus 393 ------------~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~ 459 (623)
.+...++.-+.+.+.+++.+..||||+. |++.|++++.+.+|.|||||.+.||.+.+...+.+|.+.
T Consensus 422 l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~ 501 (591)
T COG1245 422 LRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRF 501 (591)
T ss_pred HHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHH
Confidence 1123455666778889999999999988 899999999999999999999999999999999977776
Q ss_pred HhcCCcEEEEEcCchhHHh-hccccceee
Q 006974 460 LRDRVGLAVVTTHYADLSC-LKDKDTRFE 487 (623)
Q Consensus 460 l~~~~~~vii~TH~~~l~~-~~~~~~~i~ 487 (623)
....+++.+++-||..+.. ++|+..+|.
T Consensus 502 ~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 502 IENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred HhhcCceEEEEecceehhhhhhceEEEEe
Confidence 6677889999999988554 566665543
No 406
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.65 E-value=9.7e-17 Score=148.15 Aligned_cols=100 Identities=27% Similarity=0.483 Sum_probs=75.7
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhhhceeecCCCC--CCccH-----
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLYLPAKNH--PRLPW----- 394 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~~G~~vp~~~~--~~l~~----- 394 (623)
++++++.+| ++++|+||||||||||++++ |+..+ ..+...++|+... ..+.+
T Consensus 3 ~v~~~i~~g-~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~ 81 (137)
T PF00005_consen 3 NVSLEIKPG-EIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENES 81 (137)
T ss_dssp EEEEEEETT-SEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHH
T ss_pred ceEEEEcCC-CEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 578899999 99999999999999999999 66542 1223346666521 12221
Q ss_pred ---HHHHHHHcCCchhhhccc----ccccHHHH-HHHHHHHhcCCCcEEEEeCCCC
Q 006974 395 ---FDLILADIGDHQSLEQNL----STFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (623)
Q Consensus 395 ---~d~i~~~ig~~~~~~~~~----stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~ 442 (623)
++.++..++..+..+..+ +.||+|++ |+.++++++.+|+++||||||+
T Consensus 82 ~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 82 DERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 334667777655545555 99999999 8999999999999999999996
No 407
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.64 E-value=2.3e-15 Score=177.05 Aligned_cols=95 Identities=28% Similarity=0.250 Sum_probs=80.6
Q ss_pred HHHcCCch-hhhcccccccHHHH-HHHHHHHhcC---CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974 399 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVS---RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (623)
Q Consensus 399 ~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~---~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~ 473 (623)
+..+|+.. .+++++++||+||+ |+.++.+++. +|+++||||||+|||+.+...+.. ++..+.+.|.|+|++||+
T Consensus 812 L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~-~L~~l~~~G~TVIvi~H~ 890 (924)
T TIGR00630 812 LCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLE-VLQRLVDQGNTVVVIEHN 890 (924)
T ss_pred HHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCC
Confidence 45567764 47889999999999 8999998876 589999999999999999999999 555677778999999999
Q ss_pred hhHHhhcccccee------eCceEEEe
Q 006974 474 ADLSCLKDKDTRF------ENAATEFS 494 (623)
Q Consensus 474 ~~l~~~~~~~~~i------~~g~~~~~ 494 (623)
+++...||+++.+ .+|++.+.
T Consensus 891 ~~~i~~aD~ii~Lgp~~G~~gG~iv~~ 917 (924)
T TIGR00630 891 LDVIKTADYIIDLGPEGGDGGGTIVAS 917 (924)
T ss_pred HHHHHhCCEEEEecCCccCCCCEEEEe
Confidence 9876789999888 57777654
No 408
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=7.3e-16 Score=161.43 Aligned_cols=164 Identities=17% Similarity=0.224 Sum_probs=116.4
Q ss_pred EEEceeeeecCCc--cccccccccCCceEEEEEcCCCCCHHHHHHHHhhh--hhhhhhce-eecCC----CCCCc-----
Q 006974 327 MTVGSLSKGISDF--PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLA--SLMSKAGL-YLPAK----NHPRL----- 392 (623)
Q Consensus 327 l~~~~l~~~y~~~--~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~--~~~a~~G~-~vp~~----~~~~l----- 392 (623)
|.++|.+.+-.++ +++.++.|-.| +.++++||||-|||||||.||-- .+...+-. ++-+. ...-+
T Consensus 265 IKiEnF~ISA~Gk~LFvnA~L~Iv~G-RRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~ 343 (807)
T KOG0066|consen 265 IKIENFDISAQGKLLFVNASLTIVYG-RRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLK 343 (807)
T ss_pred ceeeeeeeecccceeeeccceEEEec-ceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHH
Confidence 3445555554332 55889999999 99999999999999999999321 11111111 11110 00000
Q ss_pred ----------------------------------------------cHHHHHHHHcCCc-hhhhcccccccHHHH-HHHH
Q 006974 393 ----------------------------------------------PWFDLILADIGDH-QSLEQNLSTFSGHIS-RIVD 424 (623)
Q Consensus 393 ----------------------------------------------~~~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~ 424 (623)
+-..+|++-+|.. +..+++...||||.+ |+++
T Consensus 344 aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSL 423 (807)
T KOG0066|consen 344 ADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSL 423 (807)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhH
Confidence 0022456666654 345678889999999 9999
Q ss_pred HHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEec
Q 006974 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (623)
Q Consensus 425 ~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~~ 495 (623)
++++-..|.||.|||||++||... +.| +-.||.....|.+|+|||.. +..+|..++.+.+.++.++.
T Consensus 424 ARALflEPTLLMLDEPTNHLDLNA---VIW-LdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYr 491 (807)
T KOG0066|consen 424 ARALFLEPTLLMLDEPTNHLDLNA---VIW-LDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYR 491 (807)
T ss_pred HHHHhcCceeeeecCCccccccce---eee-hhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhhhhhc
Confidence 999999999999999999999854 445 56677777889999999987 77899998888877665543
No 409
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.63 E-value=3.5e-15 Score=175.85 Aligned_cols=95 Identities=26% Similarity=0.252 Sum_probs=81.4
Q ss_pred HHHcCCch-hhhcccccccHHHH-HHHHHHHhcCCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974 399 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRE---SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (623)
Q Consensus 399 ~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~~~---~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~ 473 (623)
+..+|+.. .+++.+++|||||+ |+.++++++.+| +++||||||+|||+.+...+.. ++..+.+.|.|+|++||+
T Consensus 814 L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~-~L~~l~~~G~TVIiitH~ 892 (943)
T PRK00349 814 LVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLE-VLHRLVDKGNTVVVIEHN 892 (943)
T ss_pred HHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecC
Confidence 45567764 47889999999999 899999999998 9999999999999999999999 555677778999999999
Q ss_pred hhHHhhcccccee------eCceEEEe
Q 006974 474 ADLSCLKDKDTRF------ENAATEFS 494 (623)
Q Consensus 474 ~~l~~~~~~~~~i------~~g~~~~~ 494 (623)
+++...||+++.+ .+|++.+.
T Consensus 893 ~~~i~~aD~ii~Lgp~~G~~~G~Iv~~ 919 (943)
T PRK00349 893 LDVIKTADWIIDLGPEGGDGGGEIVAT 919 (943)
T ss_pred HHHHHhCCEEEEecCCcCCCCCEEEEe
Confidence 9876789999888 57777654
No 410
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.61 E-value=4.8e-15 Score=156.76 Aligned_cols=124 Identities=26% Similarity=0.332 Sum_probs=100.9
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCC--------------------------------------
Q 006974 348 ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH-------------------------------------- 389 (623)
Q Consensus 348 ~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~-------------------------------------- 389 (623)
.+| ++++|+||||-||||.+|++ +|-.+|--+.
T Consensus 98 r~G-~V~GilG~NGiGKsTalkIL--------aGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~Q 168 (591)
T COG1245 98 RPG-KVVGILGPNGIGKSTALKIL--------AGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQ 168 (591)
T ss_pred CCC-cEEEEEcCCCccHHHHHHHH--------hCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchH
Confidence 357 89999999999999999999 4443333221
Q ss_pred --------------------CCccHHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHH
Q 006974 390 --------------------PRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 448 (623)
Q Consensus 390 --------------------~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~ 448 (623)
..-+.+|.+.+.+++...+++.++.||||+. |++++++++.+.+++++|||++-||..+
T Consensus 169 YVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~q 248 (591)
T COG1245 169 YVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQ 248 (591)
T ss_pred HHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHH
Confidence 0112256677888999999999999999987 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcCchhHH-hhcc
Q 006974 449 GVALATSILQYLRDRVGLAVVTTHYADLS-CLKD 481 (623)
Q Consensus 449 ~~~l~~all~~l~~~~~~vii~TH~~~l~-~~~~ 481 (623)
+...+. +++.|.+.+.+||++.||+.+. -++|
T Consensus 249 Rl~~ar-~Irel~~~~k~ViVVEHDLavLD~lsD 281 (591)
T COG1245 249 RLNAAR-VIRELAEDGKYVIVVEHDLAVLDYLSD 281 (591)
T ss_pred HHHHHH-HHHHHhccCCeEEEEechHHHHHHhhh
Confidence 999999 5556776688999999998744 3444
No 411
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.60 E-value=3.5e-15 Score=143.33 Aligned_cols=167 Identities=18% Similarity=0.258 Sum_probs=122.6
Q ss_pred CCcEEEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhh-------hhhhhh----------c-
Q 006974 324 NSEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA-------SLMSKA----------G- 381 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~-------~~~a~~----------G- 381 (623)
+..+++.++.+.|.. .++ ++++.++.| ..+.++|.||+|||||||++ |-. .++.+. |
T Consensus 11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~g-sRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgd 89 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAG-SRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGD 89 (291)
T ss_pred cceEEEeccEEecccCCceEEEEeeccCCC-ceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCc
Confidence 467899999999953 233 899999999 78999999999999999999 221 111110 0
Q ss_pred -ee--------------ecCCCCCCccHHHHHHHHcCCc-------------hhhhcccccccHHHH-HHHHHHHhcCCC
Q 006974 382 -LY--------------LPAKNHPRLPWFDLILADIGDH-------------QSLEQNLSTFSGHIS-RIVDILELVSRE 432 (623)
Q Consensus 382 -~~--------------vp~~~~~~l~~~d~i~~~ig~~-------------~~~~~~~stfS~g~~-rl~~~~~l~~~~ 432 (623)
+| +|-++ .++ ...++..+|-. -++.......|-|++ |+.+.+.++.+-
T Consensus 90 l~YLGgeW~~~~~~agevplq~--D~s-ae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~Pf 166 (291)
T KOG2355|consen 90 LSYLGGEWSKTVGIAGEVPLQG--DIS-AEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPF 166 (291)
T ss_pred eeEecccccccccccccccccc--ccc-HHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccce
Confidence 01 11111 112 12222222211 134456788999999 688888899999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
.++||||.|-.||...++.|.+-+.+.-.++|+||+.+||-.+ +.....+...+.+|++...
T Consensus 167 kVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~ 229 (291)
T KOG2355|consen 167 KVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDN 229 (291)
T ss_pred eEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeec
Confidence 9999999999999999999988555555567999999999977 9999999999999988653
No 412
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.60 E-value=6.3e-15 Score=180.74 Aligned_cols=95 Identities=23% Similarity=0.232 Sum_probs=80.9
Q ss_pred HHHHcCCchh-hhcccccccHHHH-HHHHHHHhc---CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcC
Q 006974 398 ILADIGDHQS-LEQNLSTFSGHIS-RIVDILELV---SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTH 472 (623)
Q Consensus 398 i~~~ig~~~~-~~~~~stfS~g~~-rl~~~~~l~---~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH 472 (623)
++..+|+.+. +++.+.+|||||+ |++++++++ .+|+++||||||+|||+.+...+.. ++..+.+.|.|+|++||
T Consensus 792 ~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~-lL~~L~~~G~TVIiIsH 870 (1809)
T PRK00635 792 ALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIY-VLQSLTHQGHTVVIIEH 870 (1809)
T ss_pred HHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEeC
Confidence 3556788765 7899999999999 788888886 6999999999999999999999999 56667777899999999
Q ss_pred chhHHhhccccceee------CceEEE
Q 006974 473 YADLSCLKDKDTRFE------NAATEF 493 (623)
Q Consensus 473 ~~~l~~~~~~~~~i~------~g~~~~ 493 (623)
++++..++|++..+. +|++..
T Consensus 871 dl~~i~~aDrVi~L~p~gg~~~G~iv~ 897 (1809)
T PRK00635 871 NMHVVKVADYVLELGPEGGNLGGYLLA 897 (1809)
T ss_pred CHHHHHhCCEEEEEccCCCCCCCEEEE
Confidence 998668999998885 556544
No 413
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.60 E-value=1e-14 Score=141.64 Aligned_cols=131 Identities=17% Similarity=0.181 Sum_probs=84.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhhhhhh----hhce--------eecCCCCCCccH-HHHHHHHcCCchhhhcccccccHH
Q 006974 352 RVVVITGPNTGGKTASMKTLGLASLMS----KAGL--------YLPAKNHPRLPW-FDLILADIGDHQSLEQNLSTFSGH 418 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~igl~~~~a----~~G~--------~vp~~~~~~l~~-~d~i~~~ig~~~~~~~~~stfS~g 418 (623)
.+.+|+||||+|||++|..|.+...-. ..+. .-+....+.+.+ |++.+..+- .... ..+ ||+|
T Consensus 23 ~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~-~~~~-~~~--LS~G 98 (178)
T cd03239 23 SFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVL-QGKV-EQI--LSGG 98 (178)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEec-CCcC-ccc--CCHH
Confidence 389999999999999999995432100 0000 000000000000 111110000 1111 112 9999
Q ss_pred HH-HHHHHHHhc----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceee
Q 006974 419 IS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 487 (623)
Q Consensus 419 ~~-rl~~~~~l~----~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~ 487 (623)
++ ++.++++++ .+|+++|+|||++|+|+.....+... +..+.+.+.++|++||+.+....+++++.+.
T Consensus 99 e~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~-L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~ 171 (178)
T cd03239 99 EKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDM-IKEMAKHTSQFIVITLKKEMFENADKLIGVL 171 (178)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEECCHHHHhhCCeEEEEE
Confidence 99 788887764 78999999999999999999999985 4455555789999999998777888877664
No 414
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.59 E-value=8.5e-15 Score=162.81 Aligned_cols=159 Identities=20% Similarity=0.204 Sum_probs=120.5
Q ss_pred CcEEEceeeeecCCccc---cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhh--------hh-hceeecCCCCCC-
Q 006974 325 SEMTVGSLSKGISDFPV---PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLM--------SK-AGLYLPAKNHPR- 391 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v---~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~--------a~-~G~~vp~~~~~~- 391 (623)
..+.++|++..-++..+ +.+|.+++| +-+.|+||||+|||||+|+|+-+-+. +. .-.|+||.++..
T Consensus 391 ~~i~~~nl~l~~p~~~~ll~~l~~~v~~G-~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~ 469 (604)
T COG4178 391 HGITLENLSLRTPDGQTLLSELNFEVRPG-ERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQ 469 (604)
T ss_pred ceeEEeeeeEECCCCCeeeccceeeeCCC-CEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCC
Confidence 56889999988865333 999999999 89999999999999999999433221 11 236778775311
Q ss_pred ---------------cc--HHHHHHHHcCCchhhhc------ccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHH
Q 006974 392 ---------------LP--WFDLILADIGDHQSLEQ------NLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (623)
Q Consensus 392 ---------------l~--~~d~i~~~ig~~~~~~~------~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~ 447 (623)
++ -+.+++..+|+++..++ =-..||+|++ |+++|+.+.++|++++|||-|+++|+.
T Consensus 470 GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~ 549 (604)
T COG4178 470 GTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEE 549 (604)
T ss_pred ccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChH
Confidence 11 13356667777654332 1347999998 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcccccee
Q 006974 448 EGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF 486 (623)
Q Consensus 448 ~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i 486 (623)
....+.+.+.+.+- ++|+|-++|-..+..+.++...+
T Consensus 550 ~e~~l~q~l~~~lp--~~tvISV~Hr~tl~~~h~~~l~l 586 (604)
T COG4178 550 TEDRLYQLLKEELP--DATVISVGHRPTLWNFHSRQLEL 586 (604)
T ss_pred HHHHHHHHHHhhCC--CCEEEEeccchhhHHHHhhheee
Confidence 99999996665433 68999999998888776665443
No 415
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.58 E-value=5.7e-15 Score=147.44 Aligned_cols=81 Identities=17% Similarity=0.124 Sum_probs=59.5
Q ss_pred hhcccccccHHHHHHHHHHH-----hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-C-cEEEEEcCchh-HHhh
Q 006974 408 LEQNLSTFSGHISRIVDILE-----LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-V-GLAVVTTHYAD-LSCL 479 (623)
Q Consensus 408 ~~~~~stfS~g~~rl~~~~~-----l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~-~-~~vii~TH~~~-l~~~ 479 (623)
....+.+||+||+++..++. ++.+|+++|+|||++|+|+.....+...+.+ +.+. + .++|++||++. ...+
T Consensus 120 ~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~-~~~~~g~~~viiith~~~~~~~~ 198 (213)
T cd03277 120 QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVE-TACKEGTSQYFLITPKLLPGLNY 198 (213)
T ss_pred cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHH-HhhcCCCceEEEEchhhccCCcc
Confidence 45677899999996544432 3689999999999999999999999985555 4444 4 47999999964 5556
Q ss_pred ccc--cceeeCc
Q 006974 480 KDK--DTRFENA 489 (623)
Q Consensus 480 ~~~--~~~i~~g 489 (623)
+++ +..+.+|
T Consensus 199 ~~~~~v~~l~~g 210 (213)
T cd03277 199 HEKMTVLCVYNG 210 (213)
T ss_pred cCceEEEEEecC
Confidence 553 3344444
No 416
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.55 E-value=4e-14 Score=169.67 Aligned_cols=167 Identities=16% Similarity=0.171 Sum_probs=129.2
Q ss_pred CCcEEEceeeeecCCc--cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhh-------hh------------hhh
Q 006974 324 NSEMTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA-------SL------------MSK 379 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~~--~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~-------~~------------~a~ 379 (623)
+|.++++|++.+|... .| +++|.+.+| +.+||+|..|||||||+.++ -++ .+ +..
T Consensus 1136 ~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~-eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRs 1214 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPNLPLVLKGISFTIKPG-EKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRS 1214 (1381)
T ss_pred CCeEEEEEeEEEeCCCCcchhcCceEEEcCC-ceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHh
Confidence 5789999999999643 44 999999999 99999999999999999998 333 22 112
Q ss_pred hceeecCCCC-----C--CccHHH--------HHHHHcC-----------CchhhhcccccccHHHHH-HHHHHHhcCCC
Q 006974 380 AGLYLPAKNH-----P--RLPWFD--------LILADIG-----------DHQSLEQNLSTFSGHISR-IVDILELVSRE 432 (623)
Q Consensus 380 ~G~~vp~~~~-----~--~l~~~d--------~i~~~ig-----------~~~~~~~~~stfS~g~~r-l~~~~~l~~~~ 432 (623)
.-..+||++. . .+.+++ ..++..+ ++..+..+-+.||.|+|| ++++++++.++
T Consensus 1215 rlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~s 1294 (1381)
T KOG0054|consen 1215 RLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKS 1294 (1381)
T ss_pred cCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccC
Confidence 2247899861 1 112221 2333333 333445566889999995 89999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEE
Q 006974 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (623)
Q Consensus 433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~ 493 (623)
++++|||.|++.|+..-.-|-+.|.+.++ +||||.+-|..+-.--+|++.++++|++..
T Consensus 1295 kILvLDEATAsVD~~TD~lIQ~tIR~~F~--dcTVltIAHRl~TVmd~DrVlVld~G~v~E 1353 (1381)
T KOG0054|consen 1295 KILVLDEATASVDPETDALIQKTIREEFK--DCTVLTIAHRLNTVMDSDRVLVLDAGRVVE 1353 (1381)
T ss_pred CEEEEecccccCChHHHHHHHHHHHHHhc--CCeEEEEeeccchhhhcCeEEEeeCCeEee
Confidence 99999999999999888777776666665 689999999988777799999999999854
No 417
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.54 E-value=4.8e-14 Score=168.99 Aligned_cols=170 Identities=16% Similarity=0.210 Sum_probs=133.1
Q ss_pred CCCcEEEceeeeecCC---c-cc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------hhceeecCCCC-
Q 006974 323 ENSEMTVGSLSKGISD---F-PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------KAGLYLPAKNH- 389 (623)
Q Consensus 323 g~~~l~~~~l~~~y~~---~-~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------~~G~~vp~~~~- 389 (623)
++..++++|.+++.+. . +. ++||++++| +.++|+||-|||||+||.++ |-+.... ..-.|+||.+-
T Consensus 515 ~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G-~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI 593 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDSESPEPTLKDINFEIKKG-QLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWI 593 (1381)
T ss_pred CCceEEEeeeeEecCCCCCcccccceeEEecCC-CEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHh
Confidence 3446889999999864 1 23 999999999 99999999999999999999 6655431 12368998751
Q ss_pred --CC------c------cHHHHHHHHcCCch-----------hhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCC
Q 006974 390 --PR------L------PWFDLILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 443 (623)
Q Consensus 390 --~~------l------~~~d~i~~~ig~~~-----------~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~g 443 (623)
.+ + ..+++++....+.. .+-.+--+||||+| |+++|++.-.+.+++|||-|.+.
T Consensus 594 ~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSA 673 (1381)
T KOG0054|consen 594 QNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSA 673 (1381)
T ss_pred hCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchh
Confidence 01 1 11444544444333 33455679999999 99999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 444 TDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 444 lD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
+|...+..|.+.++.-+. +++|+|++||..++..-+|.++.++||++...
T Consensus 674 VDahvg~~if~~ci~~~L-~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~ 723 (1381)
T KOG0054|consen 674 VDAHVGKHIFEECIRGLL-RGKTVILVTHQLQFLPHADQIIVLKDGKIVES 723 (1381)
T ss_pred hhHhhhHHHHHHHHHhhh-cCCEEEEEeCchhhhhhCCEEEEecCCeEecc
Confidence 999999999998885443 36899999999888889999999999998654
No 418
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.49 E-value=3.9e-14 Score=166.32 Aligned_cols=151 Identities=17% Similarity=0.244 Sum_probs=115.3
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH------hhhh----h---------hhhhceeecCCCC--CC---------
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL------GLAS----L---------MSKAGLYLPAKNH--PR--------- 391 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i------gl~~----~---------~a~~G~~vp~~~~--~~--------- 391 (623)
+|+=-+.+| ..++|+|++||||||||+++ |.+. + .++.-.||-|+.- +.
T Consensus 809 ~V~G~~kPG-~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~f 887 (1391)
T KOG0065|consen 809 NVSGAFKPG-VLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRF 887 (1391)
T ss_pred cCceEecCC-ceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHH
Confidence 888889999 89999999999999999999 2221 1 1222234444320 01
Q ss_pred ---------------ccHHHHHHHHcCCchhhhccccc----ccHHHH-HHHHHHHhcCCC-cEEEEeCCCCCCCHHHHH
Q 006974 392 ---------------LPWFDLILADIGDHQSLEQNLST----FSGHIS-RIVDILELVSRE-SLVLIDEIGSGTDPSEGV 450 (623)
Q Consensus 392 ---------------l~~~d~i~~~ig~~~~~~~~~st----fS~g~~-rl~~~~~l~~~~-~LlLLDEp~~glD~~~~~ 450 (623)
..++++++..+++.+..+.-+.. ||.++| |+.++..++.+| +||+|||||+|||.+...
T Consensus 888 SA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~ 967 (1391)
T KOG0065|consen 888 SAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAA 967 (1391)
T ss_pred HHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHH
Confidence 12467888888888766665555 999999 788888899999 899999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCchh--HHhhccccceeeC-ceEEEe
Q 006974 451 ALATSILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFEN-AATEFS 494 (623)
Q Consensus 451 ~l~~all~~l~~~~~~vii~TH~~~--l~~~~~~~~~i~~-g~~~~~ 494 (623)
.+.+ +++.+.+.|.+|++|-|.+. +-+.-|+...++. |.+++.
T Consensus 968 ~i~~-~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~ 1013 (1391)
T KOG0065|consen 968 IVMR-FLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYF 1013 (1391)
T ss_pred HHHH-HHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEe
Confidence 9999 78889999999999999975 5566677766654 455554
No 419
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.48 E-value=2e-13 Score=149.24 Aligned_cols=152 Identities=16% Similarity=0.195 Sum_probs=117.6
Q ss_pred ccccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhceeecCCCC-----CCccH
Q 006974 341 VPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLYLPAKNH-----PRLPW 394 (623)
Q Consensus 341 v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G~~vp~~~~-----~~l~~ 394 (623)
-++||++.+| ++++|.|-=|+|+|-+++++ |.-... .+-..|+|-+.. ..+++
T Consensus 276 ~dvSf~vr~G-EIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI 354 (500)
T COG1129 276 RDVSFTVRAG-EILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSI 354 (500)
T ss_pred eCceeEEeCC-cEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcH
Confidence 4899999999 99999999999999999999 633211 111246665431 11111
Q ss_pred HH--------------------------HHHHHcCC-chhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCH
Q 006974 395 FD--------------------------LILADIGD-HQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP 446 (623)
Q Consensus 395 ~d--------------------------~i~~~ig~-~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~ 446 (623)
.+ ....+++. ..+.+..+++||||-+ ++.+++-++.+|++|||||||+|.|.
T Consensus 355 ~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDV 434 (500)
T COG1129 355 AENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDV 434 (500)
T ss_pred HHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCccc
Confidence 11 12223332 2356789999999987 79999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEcCch-hHHhhccccceeeCceEEEe
Q 006974 447 SEGVALATSILQYLRDRVGLAVVTTHYA-DLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 447 ~~~~~l~~all~~l~~~~~~vii~TH~~-~l~~~~~~~~~i~~g~~~~~ 494 (623)
-....+.. ++..+.++|..||++|-++ |+..+||++.++.+|++.-.
T Consensus 435 GAK~eIy~-li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e 482 (500)
T COG1129 435 GAKAEIYR-LIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGE 482 (500)
T ss_pred chHHHHHH-HHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEE
Confidence 99999999 7888899899988888875 58889999999999988653
No 420
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.48 E-value=1.4e-13 Score=144.13 Aligned_cols=147 Identities=22% Similarity=0.300 Sum_probs=109.4
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeecCCCC-----------------CCcc---HHHH---
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNH-----------------PRLP---WFDL--- 397 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp~~~~-----------------~~l~---~~d~--- 397 (623)
+++|.+.+| ++++|+|++|+||||+|+++ |.......- .|.|.+|. ..++ +.++
T Consensus 401 ~vNL~ikpG-dvvaVvGqSGaGKttllRmi~G~~~~~~ee-~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s 478 (593)
T COG2401 401 NLNLEIKPG-DVVAVVGQSGAGKTTLLRMILGAQKGRGEE-KYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRS 478 (593)
T ss_pred ceeeEecCC-CeEEEEecCCCCcchHHHHHHHHhhccccc-ccCCCCCceeccccchhhccCcccccccCchhHHHHHhh
Confidence 999999999 99999999999999999999 443221110 13333331 2222 2333
Q ss_pred ----------HHHHcCCchh--hhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 006974 398 ----------ILADIGDHQS--LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRV 464 (623)
Q Consensus 398 ----------i~~~ig~~~~--~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~ 464 (623)
++.+.|+.|. .-+..+.||.|++ |.++|..++..|++++.||++++||+.....++..+-+..++.|
T Consensus 479 ~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~g 558 (593)
T COG2401 479 KTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAG 558 (593)
T ss_pred ccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhC
Confidence 3444454443 3467899999999 89999999999999999999999999999999998877666779
Q ss_pred cEEEEEcCchhHH-hh-ccccceeeCce
Q 006974 465 GLAVVTTHYADLS-CL-KDKDTRFENAA 490 (623)
Q Consensus 465 ~~vii~TH~~~l~-~~-~~~~~~i~~g~ 490 (623)
.|++++||..++. .+ -|..+.+.-|.
T Consensus 559 iTlivvThrpEv~~AL~PD~li~vgYg~ 586 (593)
T COG2401 559 ITLIVVTHRPEVGNALRPDTLILVGYGK 586 (593)
T ss_pred CeEEEEecCHHHHhccCCceeEEeeccc
Confidence 9999999999965 45 34444444443
No 421
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2.6e-13 Score=142.88 Aligned_cols=167 Identities=15% Similarity=0.157 Sum_probs=122.3
Q ss_pred CCcEEEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH--------hhhhh------------hhhh
Q 006974 324 NSEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL--------GLASL------------MSKA 380 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i--------gl~~~------------~a~~ 380 (623)
.|.+.+.+|++.|+. +++ +++|.++.| +.++|+||.|+||||+++.+ |-+.+ +.++
T Consensus 260 ~g~v~F~~V~F~y~~~r~iL~~isf~i~~g-~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~a 338 (497)
T COG5265 260 LGAVAFINVSFAYDPRRPILNGISFTIPLG-KTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRA 338 (497)
T ss_pred cceEEEEEEEeeccccchhhcCccccccCc-cEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHH
Confidence 356889999999964 444 999999999 99999999999999999998 33322 2234
Q ss_pred ceeecCCCCCCccH--HH------------HH---------HHHcC-Cchhhh----cccccccHHHH-HHHHHHHhcCC
Q 006974 381 GLYLPAKNHPRLPW--FD------------LI---------LADIG-DHQSLE----QNLSTFSGHIS-RIVDILELVSR 431 (623)
Q Consensus 381 G~~vp~~~~~~l~~--~d------------~i---------~~~ig-~~~~~~----~~~stfS~g~~-rl~~~~~l~~~ 431 (623)
...||++. +.+.- +- .+ ...+. ..+-.+ ..--.+|||+| |++.++.+..+
T Consensus 339 Ig~VPQDt-vLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~ 417 (497)
T COG5265 339 IGIVPQDT-VLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKN 417 (497)
T ss_pred hCcCcccc-eehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcC
Confidence 45788874 22211 00 00 00000 111111 22236899999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
|+++++||.|+.||...-.+|..++-+ +. .|.|.+++-|.+.--.-+|.+++++||.+...
T Consensus 418 p~il~~deatsaldt~te~~iq~~l~~-~~-~~rttlviahrlsti~~adeiivl~~g~i~er 478 (497)
T COG5265 418 PPILILDEATSALDTHTEQAIQAALRE-VS-AGRTTLVIAHRLSTIIDADEIIVLDNGRIVER 478 (497)
T ss_pred CCEEEEehhhhHhhhhHHHHHHHHHHH-Hh-CCCeEEEEeehhhhccCCceEEEeeCCEEEec
Confidence 999999999999999999998875443 44 47899999999876667899999999988654
No 422
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.46 E-value=5.7e-13 Score=144.89 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=118.6
Q ss_pred CCcEEEceeeeecCC-ccc---cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhh--------h----hhceeecCC
Q 006974 324 NSEMTVGSLSKGISD-FPV---PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLM--------S----KAGLYLPAK 387 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~-~~v---~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~--------a----~~G~~vp~~ 387 (623)
+..+++++|+..-++ ..+ +++|.++.| +-+.|+||||+|||.|||.+|-+-+. . +.-.|+||.
T Consensus 431 Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g-~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQr 509 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTNGDLLIENLSLEVPSG-QNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQR 509 (659)
T ss_pred cceEEeeeeeecCCCCCceeeeeeeeEecCC-CeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCC
Confidence 357889999988754 333 799999999 89999999999999999999555431 1 224689998
Q ss_pred CCCCccH-----------------------H---------HHHHHHcCCch--hhhcccccccHHHH-HHHHHHHhcCCC
Q 006974 388 NHPRLPW-----------------------F---------DLILADIGDHQ--SLEQNLSTFSGHIS-RIVDILELVSRE 432 (623)
Q Consensus 388 ~~~~l~~-----------------------~---------d~i~~~ig~~~--~~~~~~stfS~g~~-rl~~~~~l~~~~ 432 (623)
+...++- + .+++.+.|--| ....=..+||+|++ |++.|+-+..+|
T Consensus 510 PYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kP 589 (659)
T KOG0060|consen 510 PYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKP 589 (659)
T ss_pred CCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCC
Confidence 7432211 1 12344444222 33344579999988 899999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceee
Q 006974 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 487 (623)
Q Consensus 433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~ 487 (623)
.+.||||-|+.+|..--.++... .++.|.|.|-++|...+..+-+....+.
T Consensus 590 k~AiLDE~TSAv~~dvE~~~Yr~----~r~~giT~iSVgHRkSL~kfHd~~L~~~ 640 (659)
T KOG0060|consen 590 KFAILDECTSAVTEDVEGALYRK----CREMGITFISVGHRKSLWKFHDYVLRMD 640 (659)
T ss_pred ceEEeechhhhccHHHHHHHHHH----HHHcCCeEEEeccHHHHHhhhhEEEEec
Confidence 99999999999999888777773 3445899999999988888766655553
No 423
>PF05192 MutS_III: MutS domain III C-terminus.; InterPro: IPR007696 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the core domain (domain 3) found in proteins of the MutS family. The core domain of MutS adopts a multi-helical structure comprised of two subdomains, which are interrupted by the clamp domain. Two of the helices in the core domain comprise the levers that extend towards the DNA. This domain is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF01624 and Pfam:PF05190. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterised in [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 1FW6_A ....
Probab=99.45 E-value=4.4e-13 Score=131.84 Aligned_cols=169 Identities=28% Similarity=0.308 Sum_probs=130.5
Q ss_pred CchHhHhccCCCCCCCHHHHHHHHHHHHHHHH--HH-hcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 006974 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA--MM-QSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77 (623)
Q Consensus 1 ~G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~--~~-~~~~~~l~~i~Di~~~l~r~~~g~~l~~~eL~~i~~~L~~~~~ 77 (623)
||+++|++|.+.|.++.++|+.|++.++++.. .+ .....++++++|+++++.++..|+. ++.++..+..++..+.+
T Consensus 33 ~Gkr~L~~~l~~P~~d~~~I~~R~~~v~~~~~n~~~~~~~~~~l~~~~di~~~l~~l~~~~~-~~~~~~~l~~~l~~~~~ 111 (204)
T PF05192_consen 33 MGKRLLRSWLLQPLTDIEEIEKRQDAVEEFLQNEELREELRSILKKIPDIERILKRLRSGRA-SPQDLLKLYKTLRSIIE 111 (204)
T ss_dssp HHHHHHHHHHHS-BS-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTC-SHHHHHHHHHTTHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhhhHhhhhhhhhhccchHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999986 22 3556788999999999999988876 89999999999999999
Q ss_pred HHHHHHHhhhccCCcccccchHHHHHhcCCChhHHHHHHhhhhccCCCcccCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006974 78 VWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVA 157 (623)
Q Consensus 78 l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~~I~~~Id~~~~~I~d~as~~L~~iR~~~~~~~~~l~~~l~~~~ 157 (623)
+.+++.... ...+.|..+...+++++.+.+.|.++||++.. ..+..+
T Consensus 112 i~~~~~~~~-------~~~~~L~~l~~~l~~~~~l~~~i~~~id~~~~-~~~~~~------------------------- 158 (204)
T PF05192_consen 112 IKKLLSERL-------ESSPLLRKLLSSLPDFSELLDEIESTIDEDKS-LAIREQ------------------------- 158 (204)
T ss_dssp HHHHHHCTS-------SSTHHHHHHHHHHCSHHHHHHHHHHHBHTS-C-CHCTTS-------------------------
T ss_pred HHHHHHhhc-------ccHHHHHHHHHhcccHHHHHHHHHHHHhcCcH-HHHhcc-------------------------
Confidence 988754321 11245767777776777888888888876411 000000
Q ss_pred HHHHHhcCCCCcccccccCceEEEEccccccCCCCcEEEEEecCCcEEEeccchhhhhhHHHHHHhHHHHHHHHHHHHHH
Q 006974 158 AQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLL 237 (623)
Q Consensus 158 ~~~~~~~~~~~~~i~~~~~r~~i~v~~~~~~~~~~g~~~~~s~sg~~~~~ep~~~~~l~~~~~~l~~~~~~ee~~il~~L 237 (623)
.+| +. +..++.+|+.+|
T Consensus 159 -----------~~I--~~--------------------------------------------------~~~~~~~i~~~L 175 (204)
T PF05192_consen 159 -----------DII--RD--------------------------------------------------INDEEQRILREL 175 (204)
T ss_dssp -----------SSB--ST--------------------------------------------------HHHHHHHHHHHH
T ss_pred -----------cHH--HH--------------------------------------------------HHHHHHHHHHHH
Confidence 000 00 567788999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006974 238 TAEIAKSEREIKYLMDRVLEIDLAFARAG 266 (623)
Q Consensus 238 ~~~i~~~~~~l~~~~~~~~~lD~~~a~a~ 266 (623)
++.|.++.+.|..+++.+++|||++|+|+
T Consensus 176 ~~~i~~~~~~l~~~~~~i~eLD~l~s~A~ 204 (204)
T PF05192_consen 176 TNEIRKYSPELRELSEAIAELDVLISFAK 204 (204)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999985
No 424
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.44 E-value=6.6e-13 Score=137.83 Aligned_cols=75 Identities=19% Similarity=0.231 Sum_probs=61.9
Q ss_pred ccccHHHH-HHHHHHHh--cC--CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceee
Q 006974 413 STFSGHIS-RIVDILEL--VS--RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 487 (623)
Q Consensus 413 stfS~g~~-rl~~~~~l--~~--~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~ 487 (623)
.+||+|++ ++++++.. +. +|+++|+|||++|+|+.....+...+. .+.+ +.++|++||+..+..+|++.+.+.
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~-~~~~-~~tii~isH~~~~~~~~d~~~~l~ 246 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLK-ELSR-SHQVLCITHLPQVAAMADNHFLVE 246 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHH-HHhC-CCEEEEEechHHHHHhcCcEEEEE
Confidence 35899999 67777653 33 999999999999999999999999554 4444 679999999998888999888876
Q ss_pred Cc
Q 006974 488 NA 489 (623)
Q Consensus 488 ~g 489 (623)
++
T Consensus 247 ~~ 248 (276)
T cd03241 247 KE 248 (276)
T ss_pred Ee
Confidence 65
No 425
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.38 E-value=2.9e-12 Score=144.07 Aligned_cols=87 Identities=26% Similarity=0.275 Sum_probs=73.8
Q ss_pred HHHcCCc-hhhhcccccccHHHH-HHHHHHHh---cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974 399 LADIGDH-QSLEQNLSTFSGHIS-RIVDILEL---VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (623)
Q Consensus 399 ~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l---~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~ 473 (623)
+.++|++ =.+-++..|||||+- |+++|..+ .+...|+||||||+||-+.+...|.. ++..|.+.|.|||++.|+
T Consensus 806 L~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~-VL~rLvd~GnTViVIEHN 884 (935)
T COG0178 806 LVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLE-VLHRLVDKGNTVIVIEHN 884 (935)
T ss_pred HHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecc
Confidence 4455654 245678999999998 89999775 45669999999999999999999999 888899999999999999
Q ss_pred hhHHhhcccccee
Q 006974 474 ADLSCLKDKDTRF 486 (623)
Q Consensus 474 ~~l~~~~~~~~~i 486 (623)
+++-..||+++.+
T Consensus 885 LdVIk~AD~IIDL 897 (935)
T COG0178 885 LDVIKTADWIIDL 897 (935)
T ss_pred cceEeecCEEEEc
Confidence 9988888877655
No 426
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.37 E-value=3.8e-12 Score=156.65 Aligned_cols=89 Identities=27% Similarity=0.151 Sum_probs=75.6
Q ss_pred HHHcCCch-hhhcccccccHHHH-HHHHHHHhcCC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974 399 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR---ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (623)
Q Consensus 399 ~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~~---~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~ 473 (623)
+.++|++- .+.++..|||||+. |++++..+..+ +.|+||||||+||++.+...|.. +++.|.+.|.|||++.|+
T Consensus 1683 L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~-~l~~L~~~g~tvivieH~ 1761 (1809)
T PRK00635 1683 LIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLV-QLRTLVSLGHSVIYIDHD 1761 (1809)
T ss_pred HHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHH-HHHHHHhcCCeEEEEeCC
Confidence 44556542 45688999999998 89999887654 78999999999999999999999 678899999999999999
Q ss_pred hhHHhhccccceeeC
Q 006974 474 ADLSCLKDKDTRFEN 488 (623)
Q Consensus 474 ~~l~~~~~~~~~i~~ 488 (623)
.++...||.++.+..
T Consensus 1762 ~~~i~~aD~iidlgp 1776 (1809)
T PRK00635 1762 PALLKQADYLIEMGP 1776 (1809)
T ss_pred HHHHHhCCEEEEcCC
Confidence 998878998877644
No 427
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.35 E-value=1.1e-11 Score=133.48 Aligned_cols=155 Identities=17% Similarity=0.124 Sum_probs=110.1
Q ss_pred EEEceeeeecCCc--cc-cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhh---------hhhhceeecCCCCCCccH
Q 006974 327 MTVGSLSKGISDF--PV-PIDIKVECETRVVVITGPNTGGKTASMKTLGLASL---------MSKAGLYLPAKNHPRLPW 394 (623)
Q Consensus 327 l~~~~l~~~y~~~--~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~---------~a~~G~~vp~~~~~~l~~ 394 (623)
|.++||..--+.. .| .++|.+++| .-+.||||||||||.|+|++|-+.+ ..+..+|+||.+....+-
T Consensus 482 I~lenIpvItP~~~vvv~~Ltf~i~~G-~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gt 560 (728)
T KOG0064|consen 482 IILENIPVITPAGDVLVPKLTFQIEPG-MHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGT 560 (728)
T ss_pred eEEecCceeccCcceeecceeEEecCC-ceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCc
Confidence 5667776655332 23 899999999 8899999999999999999954432 223457888876432221
Q ss_pred -----------------------HHHHHHHcCCc---------hhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974 395 -----------------------FDLILADIGDH---------QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (623)
Q Consensus 395 -----------------------~d~i~~~ig~~---------~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~ 441 (623)
...|+..+.++ +-+..=-..||||++ |+..|+.+-++|...+|||-|
T Consensus 561 lRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcT 640 (728)
T KOG0064|consen 561 LRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECT 640 (728)
T ss_pred ccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhh
Confidence 11222222221 111122346899999 899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcccccee
Q 006974 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF 486 (623)
Q Consensus 442 ~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i 486 (623)
+...+.-...+.++...+ |.+.|-+||...+-.+-.+...+
T Consensus 641 sAvsidvE~~i~~~ak~~----gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 641 SAVSIDVEGKIFQAAKDA----GISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred cccccchHHHHHHHHHhc----CceEEEeecCccHHHHHHHHHhc
Confidence 999998888887754444 88999999999887776655544
No 428
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.32 E-value=4e-12 Score=122.74 Aligned_cols=146 Identities=15% Similarity=0.261 Sum_probs=108.7
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh---------------------------hhhhhceeecCCCCCCc-
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS---------------------------LMSKAGLYLPAKNHPRL- 392 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~---------------------------~~a~~G~~vp~~~~~~l- 392 (623)
.+++++..| ++.+++|.+|||||-..|.| |... +.++..+.+++++..-+
T Consensus 25 ~v~ltlnEG-Ei~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLD 103 (330)
T COG4170 25 RVSMTLNEG-EIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLD 103 (330)
T ss_pred eeeeeeccc-eeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcC
Confidence 899999999 99999999999999999999 5542 01222233344331111
Q ss_pred -------------c-------HH----------HHHHHHcCCch---hhhcccccccHHHH-HHHHHHHhcCCCcEEEEe
Q 006974 393 -------------P-------WF----------DLILADIGDHQ---SLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (623)
Q Consensus 393 -------------~-------~~----------d~i~~~ig~~~---~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLD 438 (623)
| ++ -.++.++|+.| -....+..+.-|+- ++.+|.++++.|.|+|.|
T Consensus 104 PS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIAD 183 (330)
T COG4170 104 PSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIAD 183 (330)
T ss_pred hHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEecc
Confidence 1 01 12466777654 45567778887776 788899999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchh-HHhhccccceeeCc
Q 006974 439 EIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENA 489 (623)
Q Consensus 439 Ep~~glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~-l~~~~~~~~~i~~g 489 (623)
|||+.++|.....+.. ++..+.+. |.++++++||+. +...||++.++--|
T Consensus 184 EPTN~~e~~Tq~QifR-LLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCG 235 (330)
T COG4170 184 EPTNSMEPTTQAQIFR-LLSRLNQNSNTTILLISHDLQMISQWADKINVLYCG 235 (330)
T ss_pred CCCcccCccHHHHHHH-HHHHhhccCCceEEEEcccHHHHHHHhhheEEEEec
Confidence 9999999999999999 66666654 668899999987 78899988765444
No 429
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.22 E-value=8.1e-11 Score=117.73 Aligned_cols=71 Identities=21% Similarity=0.222 Sum_probs=50.1
Q ss_pred cccHHHH-HHHHHHH----hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcccccee
Q 006974 414 TFSGHIS-RIVDILE----LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF 486 (623)
Q Consensus 414 tfS~g~~-rl~~~~~----l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i 486 (623)
.||||++ .+++++. ...+.+++|||||.++||+.....++. ++..+.+ ..-+|++||...+...++..+.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~-~l~~~~~-~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLAD-LLKELSK-QSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHH-HHHHHTT-TSEEEEE-S-HHHHTT-SEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc-ccccccc-ccccccccccccccccccccccc
Confidence 9999999 5555533 346788999999999999999999998 4444543 36799999999988888876654
No 430
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.19 E-value=4.6e-11 Score=123.65 Aligned_cols=75 Identities=24% Similarity=0.206 Sum_probs=53.6
Q ss_pred cccccHHHH-HHHHHHHhc---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCc-hhHHhhc
Q 006974 412 LSTFSGHIS-RIVDILELV---------SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY-ADLSCLK 480 (623)
Q Consensus 412 ~stfS~g~~-rl~~~~~l~---------~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~-~~l~~~~ 480 (623)
.+.+|+|++ ++.+++.++ .+|+++|+|||+++||+.....+...+.+ .+. ++++||+ ..+..+|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~----~~q-~ii~~~~~~~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEG----RVQ-TFVTTTDLADFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhc----CCC-EEEEeCCchhccchh
Confidence 456799999 577776653 79999999999999999999988774433 233 4555554 4566666
Q ss_pred ---cccceeeCceE
Q 006974 481 ---DKDTRFENAAT 491 (623)
Q Consensus 481 ---~~~~~i~~g~~ 491 (623)
.+++.+.+|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 45566666654
No 431
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.14 E-value=2.4e-10 Score=109.00 Aligned_cols=68 Identities=22% Similarity=0.259 Sum_probs=59.2
Q ss_pred ccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhh
Q 006974 411 NLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL 479 (623)
Q Consensus 411 ~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~ 479 (623)
.+..-|-|+-=+.++..-.++.-+.|||||-++|.|.-+.++.. ++..+.+.|+-+||+||..-+..+
T Consensus 126 sLh~~SHGEsf~~i~~~rf~~~GiYiLDEPEa~LSp~RQlella-~l~~la~sGaQ~IiATHSPiLlAi 193 (233)
T COG3910 126 SLHHMSHGESFLAIFHNRFNGQGIYILDEPEAALSPSRQLELLA-ILRDLADSGAQIIIATHSPILLAI 193 (233)
T ss_pred chhhhccchHHHHHHHHHhccCceEEecCccccCCHHHHHHHHH-HHHHHHhcCCeEEEEecChhheeC
Confidence 46677888888888888889999999999999999999999988 888899999999999999765443
No 432
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.13 E-value=1.5e-10 Score=136.77 Aligned_cols=95 Identities=24% Similarity=0.214 Sum_probs=81.8
Q ss_pred HHHcCCchh-hhcccccccHHHH-HHHHHHHhcCCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCch
Q 006974 399 LADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRE--SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (623)
Q Consensus 399 ~~~ig~~~~-~~~~~stfS~g~~-rl~~~~~l~~~~--~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~ 474 (623)
+..+|+... +++.+++|||||+ |+.++.+++.+| .++||||||+||||.+...|.. ++..+.+.|.|||++||+.
T Consensus 471 L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~-~L~~L~~~G~TVIvVeHd~ 549 (924)
T TIGR00630 471 LIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIN-TLKRLRDLGNTVIVVEHDE 549 (924)
T ss_pred HhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHH-HHHHHHhCCCEEEEEECCH
Confidence 456677643 6899999999999 799999988875 8999999999999999999999 6666888899999999999
Q ss_pred hHHhhcccccee------eCceEEEe
Q 006974 475 DLSCLKDKDTRF------ENAATEFS 494 (623)
Q Consensus 475 ~l~~~~~~~~~i------~~g~~~~~ 494 (623)
++...||+++.+ .+|.+.+.
T Consensus 550 ~~i~~aD~vi~LgpgaG~~~G~Iv~~ 575 (924)
T TIGR00630 550 ETIRAADYVIDIGPGAGIHGGEVVAS 575 (924)
T ss_pred HHHhhCCEEEEecccccCCCCEEeec
Confidence 866799999999 77877654
No 433
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.10 E-value=2.1e-10 Score=135.88 Aligned_cols=95 Identities=25% Similarity=0.216 Sum_probs=82.0
Q ss_pred HHHcCCchh-hhcccccccHHHH-HHHHHHHhcCCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCch
Q 006974 399 LADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRE--SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (623)
Q Consensus 399 ~~~ig~~~~-~~~~~stfS~g~~-rl~~~~~l~~~~--~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~ 474 (623)
+..+|+... +++.+.+|||||+ |+.++.+++.+| .++||||||+||||.+...|.. ++..+++.|.|||++||+.
T Consensus 473 L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~-~L~~L~~~G~TVIvVeH~~ 551 (943)
T PRK00349 473 LVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIE-TLKHLRDLGNTLIVVEHDE 551 (943)
T ss_pred hhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCH
Confidence 556677654 7899999999999 799999988886 8999999999999999999999 6666888899999999999
Q ss_pred hHHhhcccccee------eCceEEEe
Q 006974 475 DLSCLKDKDTRF------ENAATEFS 494 (623)
Q Consensus 475 ~l~~~~~~~~~i------~~g~~~~~ 494 (623)
+....||++..+ .+|++.+.
T Consensus 552 ~~i~~aD~vi~LgpgaG~~~G~iv~~ 577 (943)
T PRK00349 552 DTIRAADYIVDIGPGAGVHGGEVVAS 577 (943)
T ss_pred HHHHhCCEEEEeccccCCCCCEEeec
Confidence 866679999999 77787654
No 434
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.09 E-value=5.8e-10 Score=120.30 Aligned_cols=169 Identities=19% Similarity=0.253 Sum_probs=130.0
Q ss_pred CCCcEEEceeeeecCC--ccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------h-------------
Q 006974 323 ENSEMTVGSLSKGISD--FPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S------------- 378 (623)
Q Consensus 323 g~~~l~~~~l~~~y~~--~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------a------------- 378 (623)
|..++++++|+..-.. ..+ ++||++..| ++++|.|-.|-|-+.|+..| |+-.+- .
T Consensus 254 g~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~G-EIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r 332 (501)
T COG3845 254 GEVVLEVEDLSVKDRRGVTAVKDVSFEVRAG-EIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR 332 (501)
T ss_pred CCeEEEEeeeEeecCCCCceeeeeeeEEecC-cEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHH
Confidence 4667899999887643 234 999999999 99999999999999999999 665311 0
Q ss_pred hhc-eeecCCCC-----CCccHHHH----------------------------HHHHcCCc-hhhhcccccccHHHH-HH
Q 006974 379 KAG-LYLPAKNH-----PRLPWFDL----------------------------ILADIGDH-QSLEQNLSTFSGHIS-RI 422 (623)
Q Consensus 379 ~~G-~~vp~~~~-----~~l~~~d~----------------------------i~~~ig~~-~~~~~~~stfS~g~~-rl 422 (623)
..| .|+|.+.. ..++.+++ +...++.. .+...+..+||||.+ ++
T Consensus 333 ~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~ 412 (501)
T COG3845 333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKL 412 (501)
T ss_pred hcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehh
Confidence 111 36666531 12222222 23333332 345567899999987 79
Q ss_pred HHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974 423 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (623)
Q Consensus 423 ~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~ 493 (623)
.+++.+..+|+|||+..||.|+|......+...+++ .++.|+.|+++|-+++ +..+||++.++.+|.+.-
T Consensus 413 IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e-~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~ 483 (501)
T COG3845 413 ILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLE-LRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVG 483 (501)
T ss_pred hhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHH-HHhcCCEEEEEehhHHHHHHhhheeeeeeCCceec
Confidence 999999999999999999999999999999997776 6777899999999976 889999999999998753
No 435
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.09 E-value=2.5e-10 Score=120.41 Aligned_cols=146 Identities=21% Similarity=0.276 Sum_probs=104.5
Q ss_pred cccccccCC----ceEEEEEcCCCCCHHHHHHHH-hhhhhhhh------hceeecCCCCCCcc-----------------
Q 006974 342 PIDIKVECE----TRVVVITGPNTGGKTASMKTL-GLASLMSK------AGLYLPAKNHPRLP----------------- 393 (623)
Q Consensus 342 ~i~l~l~~g----~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~------~G~~vp~~~~~~l~----------------- 393 (623)
+..+.+..| .++++.+|.||.|||||++++ |.+.+... ..+|-|+.-.....
T Consensus 354 ~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~ 433 (592)
T KOG0063|consen 354 DFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMH 433 (592)
T ss_pred eEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhcC
Confidence 444444433 389999999999999999999 33322211 11233332111100
Q ss_pred --HHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Q 006974 394 --WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVT 470 (623)
Q Consensus 394 --~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~ 470 (623)
++.+++.-+..++-+++.+.+||||+. |+++++.+-.+.++.++|||.+-+|.+.+...+.-+.+++...+.|.+++
T Consensus 434 pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvV 513 (592)
T KOG0063|consen 434 PQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVV 513 (592)
T ss_pred HHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhh
Confidence 122334444567788899999999988 89999999999999999999999999999988887777777777899999
Q ss_pred cCchhHHh-hccccceee
Q 006974 471 THYADLSC-LKDKDTRFE 487 (623)
Q Consensus 471 TH~~~l~~-~~~~~~~i~ 487 (623)
.||.-++. ++|+++++.
T Consensus 514 EhdfImaTYladrvivf~ 531 (592)
T KOG0063|consen 514 EHDFIMATYLADRVIVFE 531 (592)
T ss_pred hhHHHHHHhhcceeEEEe
Confidence 99987664 577766554
No 436
>PRK13695 putative NTPase; Provisional
Probab=99.00 E-value=6.4e-10 Score=107.39 Aligned_cols=134 Identities=19% Similarity=0.202 Sum_probs=80.1
Q ss_pred EEEEEcCCCCCHHHHHHHH-hhhhhhh-hhceeecCCC---CCCc--cH---H---HHHHHHcCC--chhhhcccccccH
Q 006974 353 VVVITGPNTGGKTASMKTL-GLASLMS-KAGLYLPAKN---HPRL--PW---F---DLILADIGD--HQSLEQNLSTFSG 417 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i-gl~~~~a-~~G~~vp~~~---~~~l--~~---~---d~i~~~ig~--~~~~~~~~stfS~ 417 (623)
.++|+|+||+|||||++.+ +.+.... ..+.++.+.. .... .. . ...+...+. .+...+....+|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lsg 81 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVGGFYTEEVREGGKRIGFKIIDLDTGEEGILARVGFPSRPRVGKYVVNLED 81 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEcHHHHhcCCccceEEEEcCCCCeEEccccCCCCCCceeeEEEehHH
Confidence 4789999999999999997 2221100 0111222110 0000 00 0 011222221 2223455667888
Q ss_pred HHH-HHHHHHHhcCCCcEEEEeCCC--CCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceE
Q 006974 418 HIS-RIVDILELVSRESLVLIDEIG--SGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAAT 491 (623)
Q Consensus 418 g~~-rl~~~~~l~~~~~LlLLDEp~--~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~ 491 (623)
.++ ....+.....+|+++++|||+ .++++.....+.. +.+.+.++|+|+|+..+..+++++....++.+
T Consensus 82 le~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~-----~~~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i 153 (174)
T PRK13695 82 LERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEE-----VLDSEKPVIATLHRRSVHPFVQEIKSRPGGRV 153 (174)
T ss_pred HHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHH-----HHhCCCeEEEEECchhhHHHHHHHhccCCcEE
Confidence 887 566666677899999999964 3555544444433 22458899999999777788888888877765
No 437
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.99 E-value=1.9e-09 Score=111.24 Aligned_cols=112 Identities=21% Similarity=0.231 Sum_probs=64.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCC-----CccHHH---HHHHHc-CCch-hhhcccccccHHHH-
Q 006974 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP-----RLPWFD---LILADI-GDHQ-SLEQNLSTFSGHIS- 420 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~-----~l~~~d---~i~~~i-g~~~-~~~~~~stfS~g~~- 420 (623)
.-++|+||||+|||||++++ +|.+.|..+.. .+..++ .+...+ +..+ .+....+.+-+-.+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l--------~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~ 183 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDL--------ARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKA 183 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHH--------hCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHH
Confidence 46899999999999999999 66555554321 122122 222111 1111 11222222332222
Q ss_pred HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhh
Q 006974 421 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL 479 (623)
Q Consensus 421 rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~ 479 (623)
.-..++..+.+|+++|+|||++. ....++++.+. .|.++|+|||+..+..+
T Consensus 184 ~~~~~~i~~~~P~villDE~~~~-------e~~~~l~~~~~-~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 184 EGMMMLIRSMSPDVIVVDEIGRE-------EDVEALLEALH-AGVSIIATAHGRDVEDL 234 (270)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcH-------HHHHHHHHHHh-CCCEEEEEechhHHHHH
Confidence 11222334579999999999742 22333555554 58899999998766444
No 438
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.90 E-value=1.2e-08 Score=103.28 Aligned_cols=134 Identities=13% Similarity=0.229 Sum_probs=77.3
Q ss_pred EEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHH-HHHH-hhhhhhhhhceeecCCCCCCccHHHHHHHHcCCc
Q 006974 328 TVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTAS-MKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIGDH 405 (623)
Q Consensus 328 ~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTl-Lk~i-gl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~ 405 (623)
.++++.+.+++ -+++| .+++|+||||+||||| ++.+ +++. ....+.|+..+. ..-.+..++ ..+|..
T Consensus 9 ~~~~ld~~l~g-------gi~~g-~~~~i~G~~G~GKTtl~~~~~~~~~~-~g~~~~yi~~e~-~~~~~~~~~-~~~g~~ 77 (230)
T PRK08533 9 SRDELHKRLGG-------GIPAG-SLILIEGDESTGKSILSQRLAYGFLQ-NGYSVSYVSTQL-TTTEFIKQM-MSLGYD 77 (230)
T ss_pred EEeeeehhhCC-------CCCCC-cEEEEECCCCCCHHHHHHHHHHHHHh-CCCcEEEEeCCC-CHHHHHHHH-HHhCCc
Confidence 34555555543 36778 8999999999999999 4555 3322 233445666543 222222222 344431
Q ss_pred --hhhhc------c-cccccHHHH---HHHHHHHh--cCCCcEEEEeCCCCCC----CHHHHHHHHHHHHHHHhcCCcEE
Q 006974 406 --QSLEQ------N-LSTFSGHIS---RIVDILEL--VSRESLVLIDEIGSGT----DPSEGVALATSILQYLRDRVGLA 467 (623)
Q Consensus 406 --~~~~~------~-~stfS~g~~---rl~~~~~l--~~~~~LlLLDEp~~gl----D~~~~~~l~~all~~l~~~~~~v 467 (623)
+.... . ...+|+... .+..++.. ..+|+++++|||++++ |+.....+.. ++..+.+.|.++
T Consensus 78 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~-~l~~l~~~g~tv 156 (230)
T PRK08533 78 INKKLISGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMA-FFKRISSLNKVI 156 (230)
T ss_pred hHHHhhcCcEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHH-HHHHHHhCCCEE
Confidence 11110 0 012344322 23333332 3579999999999999 7777777766 666677777765
Q ss_pred EEEcCch
Q 006974 468 VVTTHYA 474 (623)
Q Consensus 468 ii~TH~~ 474 (623)
++ ||+.
T Consensus 157 i~-t~~~ 162 (230)
T PRK08533 157 IL-TANP 162 (230)
T ss_pred EE-Eecc
Confidence 55 5553
No 439
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.88 E-value=5.8e-09 Score=101.17 Aligned_cols=120 Identities=15% Similarity=0.127 Sum_probs=77.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhhh-hhhhceeecCCCCCCccHHHHHHHHcCC----------chhhhcccccccHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGD----------HQSLEQNLSTFSGHISR 421 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~igl~~~-~a~~G~~vp~~~~~~l~~~d~i~~~ig~----------~~~~~~~~stfS~g~~r 421 (623)
+++|.||.|+|||||.-.+..-.. ....+.|+..+. ...-+.+.+..+|. ....+..+..+|+++.+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~--~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~ 78 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE--SPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESS 78 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC--CHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhh
Confidence 368999999999999888733222 223345554432 11112222233332 23345566778888765
Q ss_pred -----HHHHHH--hcCCCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974 422 -----IVDILE--LVSRESLVLIDEIGSGTD---PSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (623)
Q Consensus 422 -----l~~~~~--l~~~~~LlLLDEp~~glD---~~~~~~l~~all~~l~~~~~~vii~TH~~~ 475 (623)
+..+.. ...+|+++++|||+..+| +.....+.. ++..+++.|.++|+++|...
T Consensus 79 ~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~-l~~~l~~~g~tvi~v~~~~~ 141 (187)
T cd01124 79 LRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRR-LLFALKRFGVTTLLTSEQSG 141 (187)
T ss_pred hhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHH-HHHHHHHCCCEEEEEecccc
Confidence 222222 356899999999999999 666666666 67778888999999999865
No 440
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.81 E-value=9e-09 Score=102.44 Aligned_cols=65 Identities=29% Similarity=0.315 Sum_probs=46.0
Q ss_pred ccccccHHHHHH-HHHHHhcC--CC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH
Q 006974 411 NLSTFSGHISRI-VDILELVS--RE-SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL 476 (623)
Q Consensus 411 ~~stfS~g~~rl-~~~~~l~~--~~-~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l 476 (623)
+.+.+|.|++++ .++..+.. .. .++++|||-+||.|.....+.. ++..+...+.-+|+|||...+
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~-~l~~~~~~~~QviitTHSp~i 301 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIE-LLKELSKKNIQVIITTHSPFI 301 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHH-HHHHTGGGSSEEEEEES-GGG
T ss_pred eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHH-HHHhhCccCCEEEEeCccchh
Confidence 355669999976 44444333 33 9999999999999999999987 445555556789999999764
No 441
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.72 E-value=5.5e-08 Score=110.90 Aligned_cols=115 Identities=19% Similarity=0.249 Sum_probs=83.3
Q ss_pred ccccHHHH-HHHHHHHhcCC----CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceee
Q 006974 413 STFSGHIS-RIVDILELVSR----ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 487 (623)
Q Consensus 413 stfS~g~~-rl~~~~~l~~~----~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~ 487 (623)
..+|||++ |+.++++++.. |+++|+|||++|+|+.....+.. ++..+.+ +.+||++||++.+..+|++++.+.
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~-~l~~l~~-~~~vi~iTH~~~~~~~ad~~~~l~ 516 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAK-KLAQLSE-RHQVLCVTHLPQVAAHADAHFKVE 516 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHhc-CCEEEEEEChHHHHHhcCeEEEEE
Confidence 57999999 89999887654 69999999999999999999999 5555664 789999999999888999998887
Q ss_pred CceEEEecCccccccccccCCCCCcHHHHHHHHCC---CCHHHHHHHHHHH
Q 006974 488 NAATEFSLETLRPTYRILWGSTGDSNALNIAKSIG---FDRKIIQRAQKLV 535 (623)
Q Consensus 488 ~g~~~~~~~~l~~~y~l~~g~~~~s~a~~ia~~~g---~~~~i~~~a~~~~ 535 (623)
++.. +..+...... ..+..--.+||+++| +.+..+..|++.+
T Consensus 517 k~~~--~~~t~s~i~~----L~~~~r~~EiArml~G~~~t~~~~~~A~~ll 561 (563)
T TIGR00634 517 KEGL--DGRTATRVRP----LSGEERVAELARMLAGLEKSDLTLAHAQELL 561 (563)
T ss_pred EccC--CCcEEEEEEE----CCccHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 6531 1111111111 123445568999985 2455566666654
No 442
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.70 E-value=4.4e-08 Score=116.27 Aligned_cols=152 Identities=21% Similarity=0.238 Sum_probs=114.3
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------h-hhceeecCCCCCCcc--------
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------S-KAGLYLPAKNHPRLP-------- 393 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a-~~G~~vp~~~~~~l~-------- 393 (623)
|++.-+++| +++.+.||.|||||||||.+ |-..-+ . +.-.|.++.. ..++
T Consensus 133 ~~sg~~~pg-~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~D-vH~p~lTVreTl 210 (1391)
T KOG0065|consen 133 DISGIIKPG-EMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQD-VHFPELTVRETL 210 (1391)
T ss_pred CcceeEcCC-ceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccc-cccceeEEeehh
Confidence 899999999 99999999999999999999 322110 0 1112333322 1111
Q ss_pred ------------------------HHHHHHHHcCCchhhh-----cccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCC
Q 006974 394 ------------------------WFDLILADIGDHQSLE-----QNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 443 (623)
Q Consensus 394 ------------------------~~d~i~~~ig~~~~~~-----~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~g 443 (623)
..|.++..+|+..-.+ ....-.|||+| |+..+-.++.+++++.+||+|+|
T Consensus 211 dFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~G 290 (1391)
T KOG0065|consen 211 DFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRG 290 (1391)
T ss_pred hHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccccc
Confidence 2345677778765443 34567899999 88888889999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEcCch--hHHhhccccceeeCceEEEec
Q 006974 444 TDPSEGVALATSILQYLRDRVGLAVVTTHYA--DLSCLKDKDTRFENAATEFSL 495 (623)
Q Consensus 444 lD~~~~~~l~~all~~l~~~~~~vii~TH~~--~l~~~~~~~~~i~~g~~~~~~ 495 (623)
||....-.+..++....+..+.|++++-|.. +.-.+-|.+..+.+|...+..
T Consensus 291 LDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~G 344 (1391)
T KOG0065|consen 291 LDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQG 344 (1391)
T ss_pred ccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEec
Confidence 9999999999976665555678888888885 356788899999999988763
No 443
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.70 E-value=8.7e-08 Score=89.74 Aligned_cols=121 Identities=14% Similarity=0.110 Sum_probs=68.8
Q ss_pred EEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeecCCCCCCccHHHHH--HHHcCCchhh---hcccccccHHH-HHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLI--LADIGDHQSL---EQNLSTFSGHI-SRIVDI 425 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp~~~~~~l~~~d~i--~~~ig~~~~~---~~~~stfS~g~-~rl~~~ 425 (623)
+++|+||||+||||+++.+ +..........|+..... .-...... +...+..+.. .......+.+. .+....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEE-IEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAER 79 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcc-hHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHH
Confidence 3689999999999999999 333222222334444331 11111111 1111111111 11111222222 245556
Q ss_pred HHhcCCCcEEEEeCCCCCC----------CHHHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974 426 LELVSRESLVLIDEIGSGT----------DPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (623)
Q Consensus 426 ~~l~~~~~LlLLDEp~~gl----------D~~~~~~l~~all~~l~~~~~~vii~TH~~~ 475 (623)
.....++.++++|||++-+ +......+.. +.....+.+.++|+++|...
T Consensus 80 ~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~vv~~~~~~~ 138 (165)
T cd01120 80 LRERGGDDLIILDELTRLVRALREIREGYPGELDEELRE-LLERARKGGVTVIFTLQVPS 138 (165)
T ss_pred HHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHH-HHHHHhcCCceEEEEEecCC
Confidence 6677899999999999544 4443455544 77777777899999999864
No 444
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.69 E-value=5.3e-08 Score=103.23 Aligned_cols=80 Identities=16% Similarity=0.167 Sum_probs=66.6
Q ss_pred HHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHH
Q 006974 399 LADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS 477 (623)
Q Consensus 399 ~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~ 477 (623)
...+.+...+++.+..+|||+- |.++|+..+...++.++|||.+-||...+...+. .+..+..-..-+|++.||+.+.
T Consensus 198 ~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~-~IRsl~~p~~YiIVVEHDLsVL 276 (592)
T KOG0063|consen 198 CDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAI-TIRSLINPDRYIIVVEHDLSVL 276 (592)
T ss_pred HHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHH-HHHHhhCCCCeEEEEEeechHH
Confidence 3344455667888999999887 8899999999999999999999999999999888 5556666678899999999865
Q ss_pred hh
Q 006974 478 CL 479 (623)
Q Consensus 478 ~~ 479 (623)
.+
T Consensus 277 Dy 278 (592)
T KOG0063|consen 277 DY 278 (592)
T ss_pred Hh
Confidence 53
No 445
>PRK10869 recombination and repair protein; Provisional
Probab=98.67 E-value=1.3e-07 Score=107.35 Aligned_cols=114 Identities=15% Similarity=0.211 Sum_probs=82.8
Q ss_pred cccHHHH-HHHHHHHhcC----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeC
Q 006974 414 TFSGHIS-RIVDILELVS----RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFEN 488 (623)
Q Consensus 414 tfS~g~~-rl~~~~~l~~----~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~ 488 (623)
.+|||++ |+++++.++. +|+++|+|||++|+|+.....+.. ++..+.+ +.+||++||++.+..+|++++.+..
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~-~l~~l~~-~~qvi~iTH~~~~~~~ad~~~~v~k 507 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGK-LLRQLGE-STQVMCVTHLPQVAGCGHQHFFVSK 507 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHhc-CCEEEEEecCHHHHHhCCEEEEEec
Confidence 7899999 8999988764 689999999999999999999999 5556654 5899999999998899998888765
Q ss_pred ceEEEecCccccccccccCCCCCcHHHHHHHHCCC---CHHHHHHHHHHH
Q 006974 489 AATEFSLETLRPTYRILWGSTGDSNALNIAKSIGF---DRKIIQRAQKLV 535 (623)
Q Consensus 489 g~~~~~~~~l~~~y~l~~g~~~~s~a~~ia~~~g~---~~~i~~~a~~~~ 535 (623)
+.. ... +|.-..-..+..--.+||+++|- .+..+..|++.+
T Consensus 508 ~~~--~~~----t~s~i~~L~~~~R~~EiARMl~G~~~t~~~~~~A~eLl 551 (553)
T PRK10869 508 ETD--GGM----TETHMQPLDKKARLQELARLLGGSEVTRNTLANAKELL 551 (553)
T ss_pred ccc--CCe----eeEEEEECChhHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 421 100 11111111234456789999852 455566776654
No 446
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.62 E-value=6.6e-08 Score=117.82 Aligned_cols=83 Identities=16% Similarity=0.061 Sum_probs=68.3
Q ss_pred chhhhcccccccHHHH-HHHHHHHhcC----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974 405 HQSLEQNLSTFSGHIS-RIVDILELVS----------RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (623)
Q Consensus 405 ~~~~~~~~stfS~g~~-rl~~~~~l~~----------~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~ 473 (623)
.....+++.+|||||+ +++++++++. +|+++||||||+|+|+.....+.. ++..+...|.+|+|+||+
T Consensus 941 ~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~-~l~~l~~~g~~i~iisH~ 1019 (1042)
T TIGR00618 941 YTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIG-ILDAIREGSKMIGIISHV 1019 (1042)
T ss_pred CCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCc
Confidence 3455678999999999 7888877653 799999999999999999999999 556677778899999999
Q ss_pred hhHH-hhccccceeeC
Q 006974 474 ADLS-CLKDKDTRFEN 488 (623)
Q Consensus 474 ~~l~-~~~~~~~~i~~ 488 (623)
.++. .+++++.++..
T Consensus 1020 ~~~~~~~~~~i~v~~~ 1035 (1042)
T TIGR00618 1020 PEFRERIPHRILVKKT 1035 (1042)
T ss_pred HHHHHhhCCEEEEEEC
Confidence 9855 57777766643
No 447
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.60 E-value=4.8e-07 Score=91.54 Aligned_cols=125 Identities=14% Similarity=0.170 Sum_probs=74.4
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhhhh-hhhhhceeecCCCCCCccHHHHHHHHcCCc--hhhhc-----------cc
Q 006974 347 VECETRVVVITGPNTGGKTASMKTLGLAS-LMSKAGLYLPAKNHPRLPWFDLILADIGDH--QSLEQ-----------NL 412 (623)
Q Consensus 347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~-~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~--~~~~~-----------~~ 412 (623)
++.| .++.|+||+|+|||||..+++.-. -....+.|+-.+. ..-.+..+ +..+|.. +.+.. ..
T Consensus 22 ~~~g-~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~-~~~~~~~~-~~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 22 IPFP-SLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN-TSKSYLKQ-MESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CcCC-cEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC-CHHHHHHH-HHHCCCChhHHHhCCCceEEecccccc
Confidence 4567 899999999999999999983322 1244556776654 22222222 2334421 11111 11
Q ss_pred ccccHHHH-HHHHHHHhcC--CCcEEEEeCCCCCC---CHHHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974 413 STFSGHIS-RIVDILELVS--RESLVLIDEIGSGT---DPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (623)
Q Consensus 413 stfS~g~~-rl~~~~~l~~--~~~LlLLDEp~~gl---D~~~~~~l~~all~~l~~~~~~vii~TH~~~ 475 (623)
+..+.++. .+..+...+. +|+++++|||+..+ |+.....+.. .+..+.+.++|+++++|...
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~-~l~~l~~~g~tvllt~~~~~ 166 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLT-EAKNLVDLGKTILITLHPYA 166 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCc
Confidence 22344555 4555555443 89999999999654 4444444444 34455667889999999754
No 448
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.51 E-value=1.5e-07 Score=107.31 Aligned_cols=87 Identities=22% Similarity=0.239 Sum_probs=68.9
Q ss_pred HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhc----------CCCcEEEEeCCC-CCCCHHHHHHHHHHHHHHHhcC
Q 006974 396 DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV----------SRESLVLIDEIG-SGTDPSEGVALATSILQYLRDR 463 (623)
Q Consensus 396 d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~----------~~~~LlLLDEp~-~glD~~~~~~l~~all~~l~~~ 463 (623)
+..+...|.. ...+.+||+|++ +++++++++ .+|+++|||||| +++|+.....+.. ++..+ .
T Consensus 453 ~~~~~~~g~~---~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~-~l~~~--~ 526 (562)
T PHA02562 453 NETIKSRGRE---DFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLS-ILDSL--K 526 (562)
T ss_pred hhHHhcCCCC---ccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHH-HHHhC--C
Confidence 3444444542 347789999999 788887765 589999999998 7899999999998 55555 4
Q ss_pred CcEEEEEcCchhHHhhccccceeeC
Q 006974 464 VGLAVVTTHYADLSCLKDKDTRFEN 488 (623)
Q Consensus 464 ~~~vii~TH~~~l~~~~~~~~~i~~ 488 (623)
+.++|++||+.++...+++++.+.+
T Consensus 527 ~~~iiiish~~~~~~~~d~~~~l~~ 551 (562)
T PHA02562 527 DTNVFVISHKDHDPQKFDRHLKMEK 551 (562)
T ss_pred CCeEEEEECchhchhhhhcEEEEEE
Confidence 7899999999887788888887765
No 449
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.51 E-value=4.7e-07 Score=99.51 Aligned_cols=141 Identities=16% Similarity=0.098 Sum_probs=91.9
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCC-----CccHHHHHHH-HcCCchhhhc-----
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP-----RLPWFDLILA-DIGDHQSLEQ----- 410 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~-----~l~~~d~i~~-~ig~~~~~~~----- 410 (623)
++ +.+.+| ++++|+|+||+|||||++++ +|...|..+.. .-.-+..+.. .++.. .+.+
T Consensus 151 ~l-~~i~~G-q~i~I~G~sG~GKStLl~~I--------~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~-~l~r~v~vv 219 (438)
T PRK07721 151 SL-LTVGKG-QRVGIFAGSGVGKSTLMGMI--------ARNTSADLNVIALIGERGREVREFIERDLGPE-GLKRSIVVV 219 (438)
T ss_pred ee-eeecCC-cEEEEECCCCCCHHHHHHHH--------hcccCCCeEEEEEEecCCccHHHHHHhhcChh-hhcCeEEEE
Confidence 55 999999 89999999999999999999 33322222100 0000112211 12221 1222
Q ss_pred ccccccHHHH-HHHHH---HH----hcCCCcEEEEe-----------------CC--CCCCCHHHHHHHHHHHHHHHhc-
Q 006974 411 NLSTFSGHIS-RIVDI---LE----LVSRESLVLID-----------------EI--GSGTDPSEGVALATSILQYLRD- 462 (623)
Q Consensus 411 ~~stfS~g~~-rl~~~---~~----l~~~~~LlLLD-----------------Ep--~~glD~~~~~~l~~all~~l~~- 462 (623)
..+.=|..++ +...+ .+ -....=|+++| || ++|+||.....+.. +++.+..
T Consensus 220 ~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~-ller~~~~ 298 (438)
T PRK07721 220 ATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPK-LLERTGTN 298 (438)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHH-HHHHhcCC
Confidence 2234445555 32222 11 12445588899 75 78999999999998 7777763
Q ss_pred -CCc-----EEEEEcCchhHHhhccccceeeCceEEEec
Q 006974 463 -RVG-----LAVVTTHYADLSCLKDKDTRFENAATEFSL 495 (623)
Q Consensus 463 -~~~-----~vii~TH~~~l~~~~~~~~~i~~g~~~~~~ 495 (623)
.|. ||++.|||++ ..+|++...+.+|++..+.
T Consensus 299 ~~GsIT~~~TVlv~~hdm~-e~i~d~v~~i~dG~Ivls~ 336 (438)
T PRK07721 299 ASGSITAFYTVLVDGDDMN-EPIADTVRGILDGHFVLDR 336 (438)
T ss_pred CCCCeeeEEEEEEECCCCC-chhhhhEEEecCEEEEEec
Confidence 564 8999999987 4789999999999998874
No 450
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.49 E-value=2.1e-06 Score=77.24 Aligned_cols=116 Identities=20% Similarity=0.217 Sum_probs=64.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhhhhhhh-hceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhc
Q 006974 352 RVVVITGPNTGGKTASMKTLGLASLMSK-AGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV 429 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~igl~~~~a~-~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~ 429 (623)
..++|+||+|+||||+++.++....... ...++..+........... ...........++... +.....+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALARK 76 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------hhhhhccCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999932221111 1222222211111111111 1122223333444444 433444444
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH-----HHHHHHhcCCcEEEEEcCc
Q 006974 430 SRESLVLIDEIGSGTDPSEGVALAT-----SILQYLRDRVGLAVVTTHY 473 (623)
Q Consensus 430 ~~~~LlLLDEp~~glD~~~~~~l~~-----all~~l~~~~~~vii~TH~ 473 (623)
..+.++++||+..-.+......... .........+..+|+++|.
T Consensus 77 ~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 77 LKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 4579999999999999988776543 1223333446678888884
No 451
>PRK03918 chromosome segregation protein; Provisional
Probab=98.48 E-value=3e-07 Score=110.39 Aligned_cols=78 Identities=18% Similarity=0.181 Sum_probs=64.1
Q ss_pred hcccccccHHHH-HHHHHH------HhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcc
Q 006974 409 EQNLSTFSGHIS-RIVDIL------ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKD 481 (623)
Q Consensus 409 ~~~~stfS~g~~-rl~~~~------~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~ 481 (623)
..++.+||||++ ++++++ .++.+|+++||||||+|+|+.....+...+.. +...+.++|++||+.++...|+
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~-~~~~~~~iiiith~~~~~~~~d 861 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMER-YLRKIPQVIIVSHDEELKDAAD 861 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHH-HHhcCCEEEEEECCHHHHHhCC
Confidence 467889999998 455442 46789999999999999999999999995544 5555679999999999888899
Q ss_pred ccceee
Q 006974 482 KDTRFE 487 (623)
Q Consensus 482 ~~~~i~ 487 (623)
+++.+.
T Consensus 862 ~~~~l~ 867 (880)
T PRK03918 862 YVIRVS 867 (880)
T ss_pred eEEEEE
Confidence 887765
No 452
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.47 E-value=2.4e-07 Score=101.16 Aligned_cols=143 Identities=10% Similarity=0.098 Sum_probs=85.2
Q ss_pred cccccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhce--eecCCCCCCc-cHHHHHHHHcCCch-hhhccccc
Q 006974 340 PVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGL--YLPAKNHPRL-PWFDLILADIGDHQ-SLEQNLST 414 (623)
Q Consensus 340 ~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~--~vp~~~~~~l-~~~d~i~~~ig~~~-~~~~~~st 414 (623)
.++..+.+.+| +.++|+|+||+|||||++++ +..... .|. ++...+ ... .++...+..-|... -+-...++
T Consensus 146 aID~ll~I~~G-qri~I~G~sG~GKTtLl~~Ia~~~~~~--~gvI~~iGerg-~ev~e~~~~~l~~~gl~~tvvv~~tsd 221 (432)
T PRK06793 146 SIDSMLTIGIG-QKIGIFAGSGVGKSTLLGMIAKNAKAD--INVISLVGERG-REVKDFIRKELGEEGMRKSVVVVATSD 221 (432)
T ss_pred EEeccceecCC-cEEEEECCCCCChHHHHHHHhccCCCC--eEEEEeCCCCc-ccHHHHHHHHhhhcccceeEEEEECCC
Confidence 45667999999 89999999999999999999 332221 121 222222 111 11222222222221 12345678
Q ss_pred ccHHHH-HHHHHHHhc-------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcccccee
Q 006974 415 FSGHIS-RIVDILELV-------SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF 486 (623)
Q Consensus 415 fS~g~~-rl~~~~~l~-------~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i 486 (623)
-|.+++ +...+.... .++-||++|+||++.|+. ..+.. .+...-..|-+..+.||...+.+ +.-..
T Consensus 222 ~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl-~~~e~p~~G~~~~~~s~l~~L~E---Rag~~ 295 (432)
T PRK06793 222 ESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDI-AVKELPIGGKTLLMESYMKKLLE---RSGKT 295 (432)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHH-HhcCCCCCCeeeeeeccchhHHH---HhccC
Confidence 889998 655554433 688899999999999996 33433 23333334567777788544443 32223
Q ss_pred eCceEE
Q 006974 487 ENAATE 492 (623)
Q Consensus 487 ~~g~~~ 492 (623)
..|++.
T Consensus 296 ~~GSiT 301 (432)
T PRK06793 296 QKGSIT 301 (432)
T ss_pred CCcceE
Confidence 566654
No 453
>PRK01156 chromosome segregation protein; Provisional
Probab=98.42 E-value=6e-07 Score=108.04 Aligned_cols=78 Identities=19% Similarity=0.212 Sum_probs=64.0
Q ss_pred cccccccHHHH-HHHHH------HHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC--cEEEEEcCchhHHhhc
Q 006974 410 QNLSTFSGHIS-RIVDI------LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRV--GLAVVTTHYADLSCLK 480 (623)
Q Consensus 410 ~~~stfS~g~~-rl~~~------~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~--~~vii~TH~~~l~~~~ 480 (623)
.++..||||++ +++++ ..++.+|++++|||||+|+|+.....+...+...+...+ .++|++||++++..+|
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~ 876 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVA 876 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhc
Confidence 46889999998 66654 457789999999999999999999999885544455543 3799999999988899
Q ss_pred cccceee
Q 006974 481 DKDTRFE 487 (623)
Q Consensus 481 ~~~~~i~ 487 (623)
++++.+.
T Consensus 877 d~ii~~~ 883 (895)
T PRK01156 877 DVAYEVK 883 (895)
T ss_pred CeEEEEE
Confidence 9888765
No 454
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.40 E-value=1.8e-07 Score=98.75 Aligned_cols=124 Identities=12% Similarity=0.108 Sum_probs=69.1
Q ss_pred ccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCc--hhhh-------cccc
Q 006974 343 IDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDH--QSLE-------QNLS 413 (623)
Q Consensus 343 i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~--~~~~-------~~~s 413 (623)
+++.+..| ..++|+|||||||||||+++ ++.+.|..+. +. ++...+ +... .... ....
T Consensus 137 l~~~v~~~-~~ili~G~tGsGKTTll~al--------~~~~~~~~~i--v~-ied~~E-l~~~~~~~~~l~~~~~~~~~~ 203 (308)
T TIGR02788 137 LRLAIASR-KNIIISGGTGSGKTTFLKSL--------VDEIPKDERI--IT-IEDTRE-IFLPHPNYVHLFYSKGGQGLA 203 (308)
T ss_pred HHHHhhCC-CEEEEECCCCCCHHHHHHHH--------HccCCccccE--EE-EcCccc-cCCCCCCEEEEEecCCCCCcC
Confidence 44567778 89999999999999999999 5543232221 11 111110 0000 0000 0011
Q ss_pred cccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCce
Q 006974 414 TFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAA 490 (623)
Q Consensus 414 tfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~ 490 (623)
.++. . -.+...+..+|+.+++|||.. ..+.. +++.+...+..++.|+|..+.....++...+..++
T Consensus 204 ~~~~--~-~~l~~~Lr~~pd~ii~gE~r~-------~e~~~-~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~ 269 (308)
T TIGR02788 204 KVTP--K-DLLQSCLRMRPDRIILGELRG-------DEAFD-FIRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSS 269 (308)
T ss_pred ccCH--H-HHHHHHhcCCCCeEEEeccCC-------HHHHH-HHHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhcc
Confidence 1111 1 122234678999999999995 22233 45555433335689999988766666665554443
No 455
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.39 E-value=4.3e-07 Score=89.72 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=59.2
Q ss_pred EEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCC
Q 006974 353 VVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSR 431 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~ 431 (623)
+++|+||+||||||+++.+ +.+... ..+..+--+....+.. ......+. ...+.....+|+.. +..++..+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~-~~~~i~t~e~~~E~~~-~~~~~~i~-q~~vg~~~~~~~~~-----i~~aLr~~ 74 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKN-KTHHILTIEDPIEFVH-ESKRSLIN-QREVGLDTLSFENA-----LKAALRQD 74 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc-CCcEEEEEcCCccccc-cCccceee-ecccCCCccCHHHH-----HHHHhcCC
Confidence 7899999999999999987 222111 1111111111111100 00000000 00011112233322 23345678
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccc
Q 006974 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDT 484 (623)
Q Consensus 432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~ 484 (623)
|+++++|||. |+..... +++ ....|..++.|+|..+.....++..
T Consensus 75 pd~ii~gEir---d~e~~~~----~l~-~a~~G~~v~~t~Ha~~~~~~~~Rl~ 119 (198)
T cd01131 75 PDVILVGEMR---DLETIRL----ALT-AAETGHLVMSTLHTNSAAKTIDRII 119 (198)
T ss_pred cCEEEEcCCC---CHHHHHH----HHH-HHHcCCEEEEEecCCcHHHHHhHHH
Confidence 9999999995 5554333 233 2345888999999987555455443
No 456
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.36 E-value=3.1e-07 Score=91.51 Aligned_cols=49 Identities=18% Similarity=0.055 Sum_probs=38.1
Q ss_pred cccccHH--HH-HHHHHHHhcCCCcEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 006974 412 LSTFSGH--IS-RIVDILELVSRESLVLIDEIG-----SGTDPSEGVALATSILQYLR 461 (623)
Q Consensus 412 ~stfS~g--~~-rl~~~~~l~~~~~LlLLDEp~-----~glD~~~~~~l~~all~~l~ 461 (623)
.|..+++ ++ ...++..++.+|+++++|||| +|+||.....+.. ++..++
T Consensus 148 ~Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~-~~~~~~ 204 (215)
T PTZ00132 148 ISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEK-ELQAAA 204 (215)
T ss_pred EeCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHH-HHHHHh
Confidence 3444544 33 467778899999999999999 9999999999998 444444
No 457
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.36 E-value=8.7e-07 Score=107.80 Aligned_cols=69 Identities=20% Similarity=0.085 Sum_probs=60.8
Q ss_pred hcccccccHHHH-HHHHHHHhcC--------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHh
Q 006974 409 EQNLSTFSGHIS-RIVDILELVS--------RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC 478 (623)
Q Consensus 409 ~~~~stfS~g~~-rl~~~~~l~~--------~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~ 478 (623)
.+++.+||||++ +++++++++. +|+++||||||+|+|+.....+.. ++..+.+.|.+|+|+||..++..
T Consensus 944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~-~l~~l~~~g~~v~iisH~~~l~~ 1021 (1047)
T PRK10246 944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALD-ALDALNASGKTIGVISHVEAMKE 1021 (1047)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHCCCEEEEEecHHHHHH
Confidence 478999999999 7888888774 899999999999999999999998 66778888999999999877654
No 458
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.29 E-value=1e-06 Score=108.51 Aligned_cols=78 Identities=22% Similarity=0.201 Sum_probs=64.8
Q ss_pred hhhcccccccHHHH-HHHHHHHh----cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcc
Q 006974 407 SLEQNLSTFSGHIS-RIVDILEL----VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKD 481 (623)
Q Consensus 407 ~~~~~~stfS~g~~-rl~~~~~l----~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~ 481 (623)
..+..+..||||++ ++++++++ +.+|+++|||||++|+|+.....+.. ++..+.+ +.++||+||++.+..+||
T Consensus 1082 ~~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~-~~~~~~~-~~~~i~~sh~~~~~~~~d 1159 (1179)
T TIGR02168 1082 KKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFAN-LLKEFSK-NTQFIVITHNKGTMEVAD 1159 (1179)
T ss_pred CccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHH-HHHHhcc-CCEEEEEEcChhHHHHhh
Confidence 34578899999999 77777775 47789999999999999999999988 5555654 478999999998878899
Q ss_pred cccee
Q 006974 482 KDTRF 486 (623)
Q Consensus 482 ~~~~i 486 (623)
+++.+
T Consensus 1160 ~~~~~ 1164 (1179)
T TIGR02168 1160 QLYGV 1164 (1179)
T ss_pred hHeee
Confidence 88765
No 459
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.24 E-value=3.1e-06 Score=105.50 Aligned_cols=75 Identities=16% Similarity=0.131 Sum_probs=60.1
Q ss_pred hhhhcccccccHHHHH-------HHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh----cCCcEEEEEcCch
Q 006974 406 QSLEQNLSTFSGHISR-------IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR----DRVGLAVVTTHYA 474 (623)
Q Consensus 406 ~~~~~~~stfS~g~~r-------l~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~----~~~~~vii~TH~~ 474 (623)
+......+.||+|+++ ++++.+++.+|.+++|||||+|+|+.....|...+...+. ..|.++|++||+.
T Consensus 1191 ~~~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~ 1270 (1311)
T TIGR00606 1191 DTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDE 1270 (1311)
T ss_pred CeecCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCH
Confidence 3334455799999995 6778889999999999999999999999999986666443 2367999999998
Q ss_pred h-HHhhc
Q 006974 475 D-LSCLK 480 (623)
Q Consensus 475 ~-l~~~~ 480 (623)
+ +..+|
T Consensus 1271 ~~~~~~~ 1277 (1311)
T TIGR00606 1271 DFVELLG 1277 (1311)
T ss_pred HHHHHHh
Confidence 8 44555
No 460
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.17 E-value=3.8e-06 Score=101.14 Aligned_cols=79 Identities=24% Similarity=0.209 Sum_probs=66.1
Q ss_pred hcccccccHHHH-HHHHHHHh------cCC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhh
Q 006974 409 EQNLSTFSGHIS-RIVDILEL------VSR--ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL 479 (623)
Q Consensus 409 ~~~~stfS~g~~-rl~~~~~l------~~~--~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~ 479 (623)
.+++++||||++ .+++++++ ..+ -++++|||||..||+.....++. +++.+...+.+|+||||+.++...
T Consensus 810 ~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~-~l~~i~~~~~qiiIISH~eel~e~ 888 (908)
T COG0419 810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAE-ILEELLSDGRQIIIISHVEELKER 888 (908)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHH-HHHHHHhcCCeEEEEeChHHHHHh
Confidence 578999999999 56555443 234 58999999999999999999999 666777778899999999999999
Q ss_pred ccccceeeC
Q 006974 480 KDKDTRFEN 488 (623)
Q Consensus 480 ~~~~~~i~~ 488 (623)
++..+.+..
T Consensus 889 ~~~~i~V~k 897 (908)
T COG0419 889 ADVRIRVKK 897 (908)
T ss_pred CCeEEEEEe
Confidence 988877653
No 461
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.11 E-value=1.3e-05 Score=81.98 Aligned_cols=73 Identities=11% Similarity=0.100 Sum_probs=53.0
Q ss_pred cccHHH--------H-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHH-HHHHHHHHHhcCCcEEEEEcCchhHHhhcccc
Q 006974 414 TFSGHI--------S-RIVDILELVSRESLVLIDEIGSGTDPSEGVA-LATSILQYLRDRVGLAVVTTHYADLSCLKDKD 483 (623)
Q Consensus 414 tfS~g~--------~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~-l~~all~~l~~~~~~vii~TH~~~l~~~~~~~ 483 (623)
.+|||. + ++..++....++++.+| ||..+|+.+-.. + +++.+...+.+.|+.||.+......+.+
T Consensus 129 ~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~---i~~~~~~~~~~~ivls~~la~~~~~paI 203 (249)
T cd01128 129 ILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDV---IFEEFKGTGNMELVLDRRLAERRIFPAI 203 (249)
T ss_pred CCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccch---HHHHHhcCCCcEEEEchHHhhCCCCCeE
Confidence 457777 4 67777776689999999 999999644332 3 2456665677899999998766667777
Q ss_pred ceeeCceE
Q 006974 484 TRFENAAT 491 (623)
Q Consensus 484 ~~i~~g~~ 491 (623)
.++..|+.
T Consensus 204 ~vl~s~sr 211 (249)
T cd01128 204 DILKSGTR 211 (249)
T ss_pred EEcCCCCc
Confidence 77776654
No 462
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.05 E-value=6.4e-06 Score=101.63 Aligned_cols=78 Identities=13% Similarity=0.057 Sum_probs=63.9
Q ss_pred hhcccccccHHHH-HHHHHHHhc----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccc
Q 006974 408 LEQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDK 482 (623)
Q Consensus 408 ~~~~~stfS~g~~-rl~~~~~l~----~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~ 482 (623)
....++.||||++ ++++++.++ .+|+++|||||++|+|+.....+.. ++..+.. ++.+|++||+..+..+||+
T Consensus 1068 ~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~-~l~~~~~-~~~~i~~t~~~~~~~~~d~ 1145 (1164)
T TIGR02169 1068 PVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAK-LIREKAG-EAQFIVVSLRSPMIEYADR 1145 (1164)
T ss_pred CCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHH-HHHHhcC-CCeEEEEECcHHHHHhcce
Confidence 3466789999999 677776665 5889999999999999999999998 5555554 4679999999887789998
Q ss_pred cceee
Q 006974 483 DTRFE 487 (623)
Q Consensus 483 ~~~i~ 487 (623)
.+.+.
T Consensus 1146 ~~~~~ 1150 (1164)
T TIGR02169 1146 AIGVT 1150 (1164)
T ss_pred eEeEE
Confidence 87654
No 463
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.03 E-value=3.6e-05 Score=69.86 Aligned_cols=108 Identities=21% Similarity=0.236 Sum_probs=58.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhhhhh-hhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHH
Q 006974 349 CETRVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILE 427 (623)
Q Consensus 349 ~g~~~~~I~GpNgsGKSTlLk~igl~~~-~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~ 427 (623)
.+ ..+.|+||.|+||||+++.+.-... ......++....... .. ......+.. .........
T Consensus 18 ~~-~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~-~~--~~~~~~~~~-------------~~~~~~~~~ 80 (151)
T cd00009 18 PP-KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLE-GL--VVAELFGHF-------------LVRLLFELA 80 (151)
T ss_pred CC-CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhh-hh--HHHHHhhhh-------------hHhHHHHhh
Confidence 35 7899999999999999999922111 000111121111000 00 000000000 122333344
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-----CCcEEEEEcCchh
Q 006974 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-----RVGLAVVTTHYAD 475 (623)
Q Consensus 428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-----~~~~vii~TH~~~ 475 (623)
...++.++++||.-.. ++.....+.. +++.+.. .+..+|++|+...
T Consensus 81 ~~~~~~~lilDe~~~~-~~~~~~~~~~-~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 81 EKAKPGVLFIDEIDSL-SRGAQNALLR-VLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ccCCCeEEEEeChhhh-hHHHHHHHHH-HHHhcCceeccCCCeEEEEecCccc
Confidence 5678899999999876 5555566666 3444432 4678888888754
No 464
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.01 E-value=1.2e-05 Score=81.66 Aligned_cols=46 Identities=17% Similarity=0.154 Sum_probs=35.6
Q ss_pred cCCCcEEEEeCCCC------CCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974 429 VSRESLVLIDEIGS------GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (623)
Q Consensus 429 ~~~~~LlLLDEp~~------glD~~~~~~l~~all~~l~~~~~~vii~TH~~~ 475 (623)
..+|++||+| |.+ ..|+.....+...+.....+.++++|+++|...
T Consensus 109 ~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 109 IRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred hcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 5799999999 654 478888888888555544556899999999853
No 465
>COG4637 Predicted ATPase [General function prediction only]
Probab=98.01 E-value=6.4e-05 Score=77.64 Aligned_cols=67 Identities=24% Similarity=0.224 Sum_probs=50.5
Q ss_pred ccccHHHHH-HHHHHHhc--CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcc
Q 006974 413 STFSGHISR-IVDILELV--SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKD 481 (623)
Q Consensus 413 stfS~g~~r-l~~~~~l~--~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~ 481 (623)
..||-|..| ++++..+. ..|.++++|||-++|-|.---+|+..+-. .++. .-||++||..++.....
T Consensus 269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~s-Aak~-sQv~VsTHS~rLl~~~e 338 (373)
T COG4637 269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRS-AAKR-SQVIVSTHSPRLLNAVE 338 (373)
T ss_pred hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHH-hhcc-ceEEEEeCCHHHHhhcc
Confidence 378988775 66665554 46789999999999999999999984444 3443 37999999988765433
No 466
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.00 E-value=2e-05 Score=90.06 Aligned_cols=89 Identities=26% Similarity=0.259 Sum_probs=73.2
Q ss_pred HHHcCCc-hhhhcccccccHHHH-HHHHHHHhcCC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCch
Q 006974 399 LADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSR--ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (623)
Q Consensus 399 ~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~~~--~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~ 474 (623)
+.++|++ =.+++...|||||+. |+.+|..+-.+ .=+++||||.-||-+.+-..|.. .+..|++.|.|+|+|.||.
T Consensus 465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~-tL~~LRDlGNTviVVEHDe 543 (935)
T COG0178 465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIE-TLKRLRDLGNTVIVVEHDE 543 (935)
T ss_pred HHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHH-HHHHHHhcCCeEEEEecCH
Confidence 4455654 357899999999998 77777664333 35899999999999999999999 6778999999999999999
Q ss_pred hHHhhccccceeeC
Q 006974 475 DLSCLKDKDTRFEN 488 (623)
Q Consensus 475 ~l~~~~~~~~~i~~ 488 (623)
+.-..||+++.+..
T Consensus 544 dti~~AD~iIDiGP 557 (935)
T COG0178 544 DTIRAADHIIDIGP 557 (935)
T ss_pred HHHhhcCEEEeeCC
Confidence 98888998876543
No 467
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=97.96 E-value=2.1e-05 Score=93.53 Aligned_cols=46 Identities=22% Similarity=0.182 Sum_probs=39.8
Q ss_pred cCCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974 429 VSRESLVLIDEIGSGT-DPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (623)
Q Consensus 429 ~~~~~LlLLDEp~~gl-D~~~~~~l~~all~~l~~~~~~vii~TH~~~ 475 (623)
..+|.++++|||..++ ||.....+.. .+..+++.|++++++||+.+
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~-~lk~~RK~~~~vil~Tq~~~ 696 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIRE-WLKVLRKANCAVVLATQSIS 696 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHH
Confidence 5799999999999999 6888777777 66667788899999999986
No 468
>PRK09183 transposase/IS protein; Provisional
Probab=97.95 E-value=2.1e-05 Score=81.07 Aligned_cols=109 Identities=22% Similarity=0.282 Sum_probs=63.2
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhh-hhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHH
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMS-KAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS 420 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a-~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~ 420 (623)
.+++ +..| +.++|+||+|+|||+|..++|...... ....|++. ..++..+.... .. .
T Consensus 95 ~~~~-i~~~-~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~---------~~l~~~l~~a~--~~--~------- 152 (259)
T PRK09183 95 SLSF-IERN-ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTA---------ADLLLQLSTAQ--RQ--G------- 152 (259)
T ss_pred cCCc-hhcC-CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeH---------HHHHHHHHHHH--HC--C-------
Confidence 4555 7778 889999999999999999996543221 11122221 12222211000 00 0
Q ss_pred HHHHHH-HhcCCCcEEEEeCCCCC-CCHHHHHHHHHHHHHHHhcCCcEEEEEcCch
Q 006974 421 RIVDIL-ELVSRESLVLIDEIGSG-TDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (623)
Q Consensus 421 rl~~~~-~l~~~~~LlLLDEp~~g-lD~~~~~~l~~all~~l~~~~~~vii~TH~~ 474 (623)
++.... .....++++++||.+.. .+......|.. +++...+++ .+|+||+..
T Consensus 153 ~~~~~~~~~~~~~dlLiiDdlg~~~~~~~~~~~lf~-li~~r~~~~-s~iiTsn~~ 206 (259)
T PRK09183 153 RYKTTLQRGVMAPRLLIIDEIGYLPFSQEEANLFFQ-VIAKRYEKG-SMILTSNLP 206 (259)
T ss_pred cHHHHHHHHhcCCCEEEEcccccCCCChHHHHHHHH-HHHHHHhcC-cEEEecCCC
Confidence 111111 22578899999999854 66655556666 666555544 567888873
No 469
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.95 E-value=0.00013 Score=73.46 Aligned_cols=125 Identities=17% Similarity=0.171 Sum_probs=68.1
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhhhhh-hhhhceeecCCCCCCccHHHHHHHHcCCc--hh-----------h----
Q 006974 347 VECETRVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGDH--QS-----------L---- 408 (623)
Q Consensus 347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~-~a~~G~~vp~~~~~~l~~~d~i~~~ig~~--~~-----------~---- 408 (623)
+++| ++++|.||+|+|||||...+..... ....+.|+..... ..-+-+....+|.. +. +
T Consensus 17 i~~G-~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~--~~~i~~~~~~~g~~~~~~~~~~~l~i~d~~~~~~ 93 (229)
T TIGR03881 17 IPRG-FFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEES--RESIIRQAAQFGMDFEKAIEEGKLVIIDALMKEK 93 (229)
T ss_pred CcCC-eEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCC--HHHHHHHHHHhCCCHHHHhhcCCEEEEEcccccc
Confidence 5678 8999999999999999988732211 1233445544321 11111112222211 00 0
Q ss_pred --hcccccccHHHH--HHHHHHHhc-CCCcEEEEeCCCCCC--CHHHHHHHHHHHHHHHhcCCcEEEEEcCch
Q 006974 409 --EQNLSTFSGHIS--RIVDILELV-SRESLVLIDEIGSGT--DPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (623)
Q Consensus 409 --~~~~stfS~g~~--rl~~~~~l~-~~~~LlLLDEp~~gl--D~~~~~~l~~all~~l~~~~~~vii~TH~~ 474 (623)
...+..++.... ++..+.... .++.++++|-|+.-+ +|.....+...+...+++.++|+|+++|..
T Consensus 94 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~ 166 (229)
T TIGR03881 94 EDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYA 166 (229)
T ss_pred ccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEeccc
Confidence 011122343332 233333322 257788888887543 444344455557777778899999999964
No 470
>PRK02224 chromosome segregation protein; Provisional
Probab=97.94 E-value=1.6e-05 Score=95.69 Aligned_cols=77 Identities=21% Similarity=0.130 Sum_probs=59.1
Q ss_pred cccccccHHHHH-HHHHH------HhcC-----C-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCc-EEEEEcCchh
Q 006974 410 QNLSTFSGHISR-IVDIL------ELVS-----R-ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG-LAVVTTHYAD 475 (623)
Q Consensus 410 ~~~stfS~g~~r-l~~~~------~l~~-----~-~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~-~vii~TH~~~ 475 (623)
..+..||||+++ +++++ .++. . ++++|||||++|+|+.....+.. ++..+...|. +||++||+.+
T Consensus 777 ~~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~-~l~~~~~~~~~qviiish~~~ 855 (880)
T PRK02224 777 LEPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVD-LVESMRRLGVEQIVVVSHDDE 855 (880)
T ss_pred cChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHH-HHHHHHhcCCCeEEEEECChH
Confidence 357899999984 33332 3332 2 26799999999999999999998 6666766554 7999999999
Q ss_pred HHhhccccceee
Q 006974 476 LSCLKDKDTRFE 487 (623)
Q Consensus 476 l~~~~~~~~~i~ 487 (623)
+...|++++.+.
T Consensus 856 ~~~~ad~~~~~~ 867 (880)
T PRK02224 856 LVGAADDLVRVE 867 (880)
T ss_pred HHHhcCeeEEee
Confidence 778899887774
No 471
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.94 E-value=4.7e-05 Score=84.50 Aligned_cols=92 Identities=20% Similarity=0.211 Sum_probs=54.9
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHHh-hhhhhh--hhceeecCCCCCCccHHHHHH---HHcCCchhhhcccccc
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTLG-LASLMS--KAGLYLPAKNHPRLPWFDLIL---ADIGDHQSLEQNLSTF 415 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~ig-l~~~~a--~~G~~vp~~~~~~l~~~d~i~---~~ig~~~~~~~~~stf 415 (623)
+.++.++.| .+++++||||+||||++..++ ...... ....+++++. .+++.++++- ..+|..- .
T Consensus 248 ~~~~~~~~g-~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt-~RigA~EQLr~~AeilGVpv--------~ 317 (484)
T PRK06995 248 SEDALLDRG-GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDS-YRIGGHEQLRIYGKILGVPV--------H 317 (484)
T ss_pred CccccccCC-cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCc-cchhHHHHHHHHHHHhCCCe--------e
Confidence 344556677 899999999999999999994 332221 1234677765 4666666553 2223211 1
Q ss_pred cHHH-HHHHHHHHhcCCCcEEEEeCCCCC
Q 006974 416 SGHI-SRIVDILELVSRESLVLIDEIGSG 443 (623)
Q Consensus 416 S~g~-~rl~~~~~l~~~~~LlLLDEp~~g 443 (623)
.... ..+...+..+.+..++++|.+|.+
T Consensus 318 ~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~ 346 (484)
T PRK06995 318 AVKDAADLRLALSELRNKHIVLIDTIGMS 346 (484)
T ss_pred ccCCchhHHHHHHhccCCCeEEeCCCCcC
Confidence 0111 122333445566789999997654
No 472
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.92 E-value=7.9e-06 Score=80.40 Aligned_cols=90 Identities=16% Similarity=0.186 Sum_probs=54.5
Q ss_pred EEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeecCCCC----------------------CCccHHHHHHHHcCCchhhh
Q 006974 353 VVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNH----------------------PRLPWFDLILADIGDHQSLE 409 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp~~~~----------------------~~l~~~d~i~~~ig~~~~~~ 409 (623)
+++|+||+|||||||.+++ +++. .....+++.+.. ..+..+...+..+...+.+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~--~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 78 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG--NPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVE 78 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC--CCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEe
Confidence 5799999999999999999 5431 000111222110 00111223444455555566
Q ss_pred cccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCH
Q 006974 410 QNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDP 446 (623)
Q Consensus 410 ~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~ 446 (623)
.+...+|.++...... .+.+++++|+|.|+.+.++
T Consensus 79 ~p~~d~~~~~~~~~~~--~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 79 IPVYDFKTHSRLKETV--TVYPADVIILEGILALYDK 113 (198)
T ss_pred ccccccccCcccCCce--ecCCCCEEEEechhhccch
Confidence 6677777776521111 4578899999999999887
No 473
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.90 E-value=1.7e-05 Score=85.14 Aligned_cols=113 Identities=16% Similarity=0.160 Sum_probs=57.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHH
Q 006974 349 CETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILE 427 (623)
Q Consensus 349 ~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~ 427 (623)
++ .+++|+||+||||||+|+.+ +.+... ..+..+-.+....+. .......+. ...+....-+| .-.+..+
T Consensus 121 ~~-g~ili~G~tGSGKTT~l~al~~~i~~~-~~~~i~tiEdp~E~~-~~~~~~~i~-q~evg~~~~~~-----~~~l~~~ 191 (343)
T TIGR01420 121 PR-GLILVTGPTGSGKSTTLASMIDYINKN-AAGHIITIEDPIEYV-HRNKRSLIN-QREVGLDTLSF-----ANALRAA 191 (343)
T ss_pred cC-cEEEEECCCCCCHHHHHHHHHHhhCcC-CCCEEEEEcCChhhh-ccCccceEE-ccccCCCCcCH-----HHHHHHh
Confidence 44 68999999999999999998 222100 011111111101110 000000000 00000001122 1112234
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHh
Q 006974 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC 478 (623)
Q Consensus 428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~ 478 (623)
+-.+|+++++||+. |+........ ....|.+++.|+|-.+...
T Consensus 192 lr~~pd~i~vgEir---d~~~~~~~l~-----aa~tGh~v~~T~Ha~~~~~ 234 (343)
T TIGR01420 192 LREDPDVILIGEMR---DLETVELALT-----AAETGHLVFGTLHTNSAAQ 234 (343)
T ss_pred hccCCCEEEEeCCC---CHHHHHHHHH-----HHHcCCcEEEEEcCCCHHH
Confidence 56899999999996 7766654333 2344888889999865443
No 474
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.90 E-value=0.0002 Score=82.62 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHH-hhh
Q 006974 352 RVVVITGPNTGGKTASMKTL-GLA 374 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i-gl~ 374 (623)
..++|+||||+||||+.+++ +..
T Consensus 176 ~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 176 QHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhh
Confidence 56899999999999999999 443
No 475
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.89 E-value=1e-05 Score=79.07 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=25.6
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
-+.+.+..| ..++|+|||||||||+++++
T Consensus 17 ~l~~~v~~g-~~i~I~G~tGSGKTTll~aL 45 (186)
T cd01130 17 YLWLAVEAR-KNILISGGTGSGKTTLLNAL 45 (186)
T ss_pred HHHHHHhCC-CEEEEECCCCCCHHHHHHHH
Confidence 345667788 89999999999999999999
No 476
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.89 E-value=0.00015 Score=79.32 Aligned_cols=91 Identities=19% Similarity=0.263 Sum_probs=55.6
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHhhhhhh---hhhceeecCCCCCCccHHHHHH---HHcCCchhhhcccccccHHHHH
Q 006974 348 ECETRVVVITGPNTGGKTASMKTLGLASLM---SKAGLYLPAKNHPRLPWFDLIL---ADIGDHQSLEQNLSTFSGHISR 421 (623)
Q Consensus 348 ~~g~~~~~I~GpNgsGKSTlLk~igl~~~~---a~~G~~vp~~~~~~l~~~d~i~---~~ig~~~~~~~~~stfS~g~~r 421 (623)
..| ++++++||||+||||+++.++-..++ ...+.++..+. .+++.++++. ..+|..- ....... .
T Consensus 189 ~~g-~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~-~rigalEQL~~~a~ilGvp~------~~v~~~~-d 259 (420)
T PRK14721 189 EQG-GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDS-YRIGGHEQLRIYGKLLGVSV------RSIKDIA-D 259 (420)
T ss_pred CCC-cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCC-cchhHHHHHHHHHHHcCCce------ecCCCHH-H
Confidence 467 89999999999999999988432221 12345666665 5777777653 2233221 1111111 2
Q ss_pred HHHHHHhcCCCcEEEEeCCCCCCCHHHH
Q 006974 422 IVDILELVSRESLVLIDEIGSGTDPSEG 449 (623)
Q Consensus 422 l~~~~~l~~~~~LlLLDEp~~glD~~~~ 449 (623)
+..++....+.+++++|.+ |..+...
T Consensus 260 l~~al~~l~~~d~VLIDTa--Grsqrd~ 285 (420)
T PRK14721 260 LQLMLHELRGKHMVLIDTV--GMSQRDQ 285 (420)
T ss_pred HHHHHHHhcCCCEEEecCC--CCCcchH
Confidence 3444555778899999976 5555443
No 477
>PRK04296 thymidine kinase; Provisional
Probab=97.88 E-value=6.6e-05 Score=73.72 Aligned_cols=142 Identities=19% Similarity=0.134 Sum_probs=73.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhhhhhh-hhce-eecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhc
Q 006974 352 RVVVITGPNTGGKTASMKTLGLASLMS-KAGL-YLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELV 429 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~igl~~~~a-~~G~-~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~ 429 (623)
.+++|+||.|+||||++..+..-...+ +... +.|.-. .... ...+..++|..-.. ... .+... -+..+....
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d-~~~~-~~~i~~~lg~~~~~-~~~--~~~~~-~~~~~~~~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAID-DRYG-EGKVVSRIGLSREA-IPV--SSDTD-IFELIEEEG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecccc-cccc-CCcEecCCCCcccc-eEe--CChHH-HHHHHHhhC
Confidence 789999999999999887662221111 1112 223211 1111 22345555532110 001 11111 111111134
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCch-----------hHHhhccccceeeCceEEEecCcc
Q 006974 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA-----------DLSCLKDKDTRFENAATEFSLETL 498 (623)
Q Consensus 430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~-----------~l~~~~~~~~~i~~g~~~~~~~~l 498 (623)
.+.++|++||.-. ++... +.. +++.++..|.+||++.++. .+..++|.+..+..-.+.+. ..-
T Consensus 77 ~~~dvviIDEaq~-l~~~~---v~~-l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~~vC~~Cg-~~a 150 (190)
T PRK04296 77 EKIDCVLIDEAQF-LDKEQ---VVQ-LAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELKAICVHCG-RKA 150 (190)
T ss_pred CCCCEEEEEcccc-CCHHH---HHH-HHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEeeEEccccC-Ccc
Confidence 5779999999933 44322 333 6666777899999999992 35567777766654433322 223
Q ss_pred ccccccc
Q 006974 499 RPTYRIL 505 (623)
Q Consensus 499 ~~~y~l~ 505 (623)
.+++|+.
T Consensus 151 ~~~~r~~ 157 (190)
T PRK04296 151 TMNQRLI 157 (190)
T ss_pred ceEEEEe
Confidence 3445554
No 478
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.85 E-value=0.00033 Score=75.75 Aligned_cols=45 Identities=13% Similarity=0.162 Sum_probs=36.7
Q ss_pred cEEEceeeeecCCc--------------cccccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 326 EMTVGSLSKGISDF--------------PVPIDIKVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 326 ~l~~~~l~~~y~~~--------------~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
.+.++||++.|++. .+++.+.+..| +.++|+||.|+||||+++.+
T Consensus 130 ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~G-q~~~IvG~~g~GKTtL~~~i 188 (415)
T TIGR00767 130 RVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKG-QRGLIVAPPKAGKTVLLQKI 188 (415)
T ss_pred CeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCC-CEEEEECCCCCChhHHHHHH
Confidence 46677777777532 12677888899 89999999999999999998
No 479
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.82 E-value=1.5e-05 Score=70.72 Aligned_cols=29 Identities=31% Similarity=0.231 Sum_probs=27.6
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
+++|.+.+| ++++|+||+|||||||++++
T Consensus 7 ~vsl~i~~g-e~v~I~GpSGsGKSTLl~~l 35 (107)
T cd00820 7 GVLVDVYGK-VGVLITGDSGIGKTELALEL 35 (107)
T ss_pred eeEEEEcCC-EEEEEEcCCCCCHHHHHHHh
Confidence 788999999 99999999999999999997
No 480
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=97.80 E-value=0.00029 Score=60.23 Aligned_cols=89 Identities=20% Similarity=0.252 Sum_probs=65.4
Q ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccc-CceEEEEccccccCCCCcEEEEEecCCcEEEec
Q 006974 130 RASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRR-SRMCVGIKASHKYLLPDGIALNVSSSGATYFME 208 (623)
Q Consensus 130 ~as~~L~~iR~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~~-~r~~i~v~~~~~~~~~~g~~~~~s~sg~~~~~e 208 (623)
+++++|+.+|+.+..+.+.++.++.+.... .++....+.... .+|+|.|+......+|..|+.-++..+..+|.+
T Consensus 1 g~d~~Ld~~~~~~~~~~~~l~~~~~~~~~~----~~~~~lk~~~~~~~gy~i~v~~~~~~~~p~~~~~~~~~k~~~rf~t 76 (92)
T PF05190_consen 1 GFDEELDELREEYEEIEEELEELLEEIRKK----LGIPSLKLVYIPKRGYLIEVPKSDEKKLPKDFIIVSSTKSGVRFTT 76 (92)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHH----CT-TTBEEEEETTTEEEEEEETCCGGGSTTTEEEEEEESSEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCcEEEEEcCceEEEEEEEccccccCCCceEEEEEEcCcEEEEC
Confidence 578999999999999888888888776543 344344444444 489999999887778888988877777667766
Q ss_pred cchhhhhhHHHHHHh
Q 006974 209 PKGAVEFNNMEVRLS 223 (623)
Q Consensus 209 p~~~~~l~~~~~~l~ 223 (623)
| ++..|+.++.++.
T Consensus 77 ~-~l~~L~~~~~~~~ 90 (92)
T PF05190_consen 77 P-ELKELNEELKEAE 90 (92)
T ss_dssp H-HHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHh
Confidence 6 4777777765543
No 481
>PRK00064 recF recombination protein F; Reviewed
Probab=97.79 E-value=4.3e-05 Score=82.51 Aligned_cols=78 Identities=19% Similarity=0.147 Sum_probs=57.1
Q ss_pred cccccccHHHH-HHHHHHHhc---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHh
Q 006974 410 QNLSTFSGHIS-RIVDILELV---------SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSC 478 (623)
Q Consensus 410 ~~~stfS~g~~-rl~~~~~l~---------~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~ 478 (623)
.....+|.|++ ++.+++.++ .+|+++|||||+++||+.....+...+.+ .++.+++|||+.+ +..
T Consensus 269 ~~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~----~~~qv~it~~~~~~~~~ 344 (361)
T PRK00064 269 PAADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKG----LGAQVFITTTDLEDLAD 344 (361)
T ss_pred CHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhc----cCCEEEEEcCChhhhhh
Confidence 45678899999 577776664 78999999999999999999888773322 2457899999865 444
Q ss_pred hc--cccceeeCceE
Q 006974 479 LK--DKDTRFENAAT 491 (623)
Q Consensus 479 ~~--~~~~~i~~g~~ 491 (623)
++ .+.+.+.+|.+
T Consensus 345 ~~~~~~i~~v~~G~i 359 (361)
T PRK00064 345 LLENAKIFHVEQGKI 359 (361)
T ss_pred hhccCcEEEEeCCEE
Confidence 43 24556666654
No 482
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.79 E-value=0.00023 Score=79.14 Aligned_cols=135 Identities=16% Similarity=0.134 Sum_probs=74.2
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhh-hhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHH
Q 006974 347 VECETRVVVITGPNTGGKTASMKTLGL-ASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDI 425 (623)
Q Consensus 347 l~~g~~~~~I~GpNgsGKSTlLk~igl-~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~ 425 (623)
+.+| .+++|.|++|+|||||+.+++. +........|+-.+. ...-+..-..++|....--.-....+. ..+...
T Consensus 91 i~~G-svilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE--s~~qi~~ra~rlg~~~~~l~~~~e~~~--~~I~~~ 165 (454)
T TIGR00416 91 IVPG-SLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE--SLQQIKMRAIRLGLPEPNLYVLSETNW--EQICAN 165 (454)
T ss_pred ccCC-eEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC--CHHHHHHHHHHcCCChHHeEEcCCCCH--HHHHHH
Confidence 5567 8999999999999999999832 222222345654433 111111113355543211111111111 122222
Q ss_pred HHhcCCCcEEEEeCCCCCCC---------HHHHHHHHHHHHHHHhcCCcEEEEEcCchh---------HHhhccccceee
Q 006974 426 LELVSRESLVLIDEIGSGTD---------PSEGVALATSILQYLRDRVGLAVVTTHYAD---------LSCLKDKDTRFE 487 (623)
Q Consensus 426 ~~l~~~~~LlLLDEp~~glD---------~~~~~~l~~all~~l~~~~~~vii~TH~~~---------l~~~~~~~~~i~ 487 (623)
+ ...+|+++++|....=.. +.....+...+.+..++.+.|+|+++|... +..++|.++.++
T Consensus 166 i-~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le 244 (454)
T TIGR00416 166 I-EEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFE 244 (454)
T ss_pred H-HhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEe
Confidence 2 235799999998865221 222334444467767788999999999642 234556555544
No 483
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.78 E-value=1.8e-05 Score=62.93 Aligned_cols=29 Identities=31% Similarity=0.529 Sum_probs=23.0
Q ss_pred ccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 343 IDIKVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 343 i~l~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
-++.+.+...+++|+|||||||||+|.++
T Consensus 15 ~~~~~~~~g~~tli~G~nGsGKSTllDAi 43 (62)
T PF13555_consen 15 ETIDFDPRGDVTLITGPNGSGKSTLLDAI 43 (62)
T ss_pred eEEeecCCCcEEEEECCCCCCHHHHHHHH
Confidence 34555542168999999999999999999
No 484
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.75 E-value=0.00041 Score=76.59 Aligned_cols=146 Identities=14% Similarity=0.132 Sum_probs=85.2
Q ss_pred cccccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeec--CCCCCCccHHHHHH-HHcCCchhhhc-----
Q 006974 340 PVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLP--AKNHPRLPWFDLIL-ADIGDHQSLEQ----- 410 (623)
Q Consensus 340 ~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp--~~~~~~l~~~d~i~-~~ig~~~~~~~----- 410 (623)
.++.-+.+.+| +.++|+|+||+|||||++++ +.... ..+.+.. ..+ .. +.... ..++-. .+.+
T Consensus 153 ~iD~l~~i~~G-q~~~I~G~sG~GKStLl~~I~~~~~~--~~~vi~~iG~r~-~e---v~~~~~~~~~~~-~l~~tvvv~ 224 (440)
T TIGR01026 153 SIDGLLTVGKG-QRIGIFAGSGVGKSTLLGMIARNTEA--DVNVIALIGERG-RE---VREFIEHDLGEE-GLKRSVVVV 224 (440)
T ss_pred eeeeccccCCC-cEEEEECCCCCCHHHHHHHHhCCCCC--CEEEEEEEeecc-hH---HHHHHHHHhccc-ccceEEEEE
Confidence 34444899999 89999999999999999999 22211 1111111 111 11 11111 112211 0111
Q ss_pred ccccccHHHH-HHHHH---HH----hcCCCcEEEEe-----------------CC--CCCCCHHHHHHHHHHHHHHHhcC
Q 006974 411 NLSTFSGHIS-RIVDI---LE----LVSRESLVLID-----------------EI--GSGTDPSEGVALATSILQYLRDR 463 (623)
Q Consensus 411 ~~stfS~g~~-rl~~~---~~----l~~~~~LlLLD-----------------Ep--~~glD~~~~~~l~~all~~l~~~ 463 (623)
..+.=+..++ +...+ .+ -....=|+++| || ..|.||.-...+.. +++.....
T Consensus 225 ~~~d~~p~~r~~~~~~a~t~AE~frd~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gypp~~~~~l~~-l~ERag~~ 303 (440)
T TIGR01026 225 ATSDQSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSTLPR-LLERAGAS 303 (440)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHHHhcCCCCcccccChhHHHHHHH-HHHHhccC
Confidence 1222233444 22111 11 12344467776 43 55899999888888 77777665
Q ss_pred Cc-------EEEEEcCchhHHhhccccceeeCceEEEec
Q 006974 464 VG-------LAVVTTHYADLSCLKDKDTRFENAATEFSL 495 (623)
Q Consensus 464 ~~-------~vii~TH~~~l~~~~~~~~~i~~g~~~~~~ 495 (623)
+. ||++.+||+. ..+++....+.+|++.++.
T Consensus 304 ~~GSIT~i~tVl~~~~d~~-dpi~d~~~~i~dG~ivLsr 341 (440)
T TIGR01026 304 GKGSITAFYTVLVEGDDMN-EPIADSVRGILDGHIVLSR 341 (440)
T ss_pred CCCeeeEEEEEEccCcCCC-cchhhhhccccceEEEEec
Confidence 55 7788899873 4477888889999998874
No 485
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.73 E-value=0.00014 Score=73.27 Aligned_cols=127 Identities=18% Similarity=0.221 Sum_probs=65.6
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhhhhhhh-------hhceeecCCCCCCccHHHHHHHHcCCc-hhhhccc---ccc
Q 006974 347 VECETRVVVITGPNTGGKTASMKTLGLASLMS-------KAGLYLPAKNHPRLPWFDLILADIGDH-QSLEQNL---STF 415 (623)
Q Consensus 347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a-------~~G~~vp~~~~~~l~~~d~i~~~ig~~-~~~~~~~---stf 415 (623)
+..| +++.|+||+|+|||||+.++....... ....|+-.++.....-+.+++..++.. +.....+ ..+
T Consensus 16 i~~g-~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 16 IETG-SITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCC-eEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 4567 899999999999999999995443321 233455444322222233444443321 1111111 112
Q ss_pred cHHHH-----HHHHHHHhcCCCcEEEEeCCCCCC-----C---HHHHHH----HHHHHHHHHhcCCcEEEEEcCch
Q 006974 416 SGHIS-----RIVDILELVSRESLVLIDEIGSGT-----D---PSEGVA----LATSILQYLRDRVGLAVVTTHYA 474 (623)
Q Consensus 416 S~g~~-----rl~~~~~l~~~~~LlLLDEp~~gl-----D---~~~~~~----l~~all~~l~~~~~~vii~TH~~ 474 (623)
+..+. ++........++.+|++|-.++-. + ...+.. +...+.....+.+++||+|+|-.
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~~ 170 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQVT 170 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccEe
Confidence 22211 121122222378999999998621 1 123322 33323332346688888888764
No 486
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.73 E-value=0.0012 Score=68.37 Aligned_cols=138 Identities=12% Similarity=0.141 Sum_probs=70.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHh-hhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHH
Q 006974 349 CETRVVVITGPNTGGKTASMKTLG-LASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILE 427 (623)
Q Consensus 349 ~g~~~~~I~GpNgsGKSTlLk~ig-l~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~ 427 (623)
++ .+++++||||+||||+++.++ .+........++-.++ .+++.+.++.......+ +.- ....+ ...+..++.
T Consensus 74 ~~-~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~-~ri~~~~ql~~~~~~~~-~~~-~~~~~--~~~l~~~l~ 147 (270)
T PRK06731 74 EV-QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDH-SRIGTVQQLQDYVKTIG-FEV-IAVRD--EAAMTRALT 147 (270)
T ss_pred CC-CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCC-CCHHHHHHHHHHhhhcC-ceE-EecCC--HHHHHHHHH
Confidence 56 899999999999999999993 3222222334555554 35566666543322111 000 00111 112222222
Q ss_pred ---hcCCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEE--c-CchhHHhhccccceeeCceEEEe
Q 006974 428 ---LVSRESLVLIDEIGSGT-DPSEGVALATSILQYLRDRVGLAVVT--T-HYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 428 ---l~~~~~LlLLDEp~~gl-D~~~~~~l~~all~~l~~~~~~vii~--T-H~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
...+.+++|+|-|++.- |...-..+.. +++.. +..-++++. | ...++...+...-.+.-.++.+.
T Consensus 148 ~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~-~~~~~-~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~T 219 (270)
T PRK06731 148 YFKEEARVDYILIDTAGKNYRASETVEEMIE-TMGQV-EPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFT 219 (270)
T ss_pred HHHhcCCCCEEEEECCCCCcCCHHHHHHHHH-HHhhh-CCCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEEE
Confidence 22467999999999874 5555555554 33322 222234332 3 33445444443322333444443
No 487
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.72 E-value=2e-05 Score=88.46 Aligned_cols=124 Identities=15% Similarity=0.135 Sum_probs=68.5
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhhhhhh--hhhceeecCCCCCCccHHHHHHHHcCCch--hhhc------------
Q 006974 347 VECETRVVVITGPNTGGKTASMKTLGLASLM--SKAGLYLPAKNHPRLPWFDLILADIGDHQ--SLEQ------------ 410 (623)
Q Consensus 347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~--a~~G~~vp~~~~~~l~~~d~i~~~ig~~~--~~~~------------ 410 (623)
+++| .+++|+||+|+|||||..+....-.. ...+.|+-.... . .-+-+-+..+|..- ..+.
T Consensus 18 lp~g-~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~-~-~~l~~~~~~~G~~~~~~~~~g~l~~~~~~~~~ 94 (484)
T TIGR02655 18 LPIG-RSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEES-P-QDIIKNARSFGWDLQKLVDEGKLFILDASPDP 94 (484)
T ss_pred CCCC-eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC-H-HHHHHHHHHcCCCHHHHhhcCceEEEecCchh
Confidence 5678 89999999999999999988222111 345667655431 1 11112223333210 0000
Q ss_pred ----ccccccHHH--HHHHHHHHhcCCCcEEEEe---CCCCCCCH--HHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974 411 ----NLSTFSGHI--SRIVDILELVSRESLVLID---EIGSGTDP--SEGVALATSILQYLRDRVGLAVVTTHYAD 475 (623)
Q Consensus 411 ----~~stfS~g~--~rl~~~~~l~~~~~LlLLD---Ep~~glD~--~~~~~l~~all~~l~~~~~~vii~TH~~~ 475 (623)
.+..+.-.. .++...+. -.+++.|++| .+....|. ..+..+.. ++..+++.|+|+|+|||+.+
T Consensus 95 ~~~~~~~~~~l~~~l~~i~~~ls-~g~~qRVvIDSl~aL~~~~~~~~~~r~~l~~-Li~~L~~~g~TvLLtsh~~~ 168 (484)
T TIGR02655 95 EGQDVVGGFDLSALIERINYAIR-KYKAKRVSIDSVTAVFQQYDAVSVVRREIFR-LVARLKQIGVTTVMTTERIE 168 (484)
T ss_pred ccccccccCCHHHHHHHHHHHHH-HhCCcEEEEeehhHhhhhcCchHHHHHHHHH-HHHHHHHCCCEEEEEecCcc
Confidence 011122111 12211111 2467888888 33334443 34455655 77888888999999999864
No 488
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.00027 Score=76.27 Aligned_cols=103 Identities=20% Similarity=0.216 Sum_probs=60.8
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhh-h-h-hhceeecCCCCCCccHHHHHH---HHcCCchhhhcccccc
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASL-M-S-KAGLYLPAKNHPRLPWFDLIL---ADIGDHQSLEQNLSTF 415 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~-~-a-~~G~~vp~~~~~~l~~~d~i~---~~ig~~~~~~~~~stf 415 (623)
.++..+..| .+++++||||+||||++..++-... . . ....++..+. .+++..+++- ..+|..-..-.....
T Consensus 129 ~~~~~~~~g-~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~-~R~ga~EqL~~~a~~~gv~~~~~~~~~~- 205 (374)
T PRK14722 129 SEDALMERG-GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDS-YRIGGHEQLRIFGKILGVPVHAVKDGGD- 205 (374)
T ss_pred CCCccccCC-cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccc-ccccHHHHHHHHHHHcCCceEecCCccc-
Confidence 455667788 8999999999999999999943322 2 1 1234555554 3555555543 233432111111112
Q ss_pred cHHHHHHHHHHHhcCCCcEEEEeCCCCC-CCHHHHHHHH
Q 006974 416 SGHISRIVDILELVSRESLVLIDEIGSG-TDPSEGVALA 453 (623)
Q Consensus 416 S~g~~rl~~~~~l~~~~~LlLLDEp~~g-lD~~~~~~l~ 453 (623)
+..++....+.++||+|.||.. .|......+.
T Consensus 206 ------l~~~l~~l~~~DlVLIDTaG~~~~d~~l~e~La 238 (374)
T PRK14722 206 ------LQLALAELRNKHMVLIDTIGMSQRDRTVSDQIA 238 (374)
T ss_pred ------HHHHHHHhcCCCEEEEcCCCCCcccHHHHHHHH
Confidence 2334445577899999999866 3554444443
No 489
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.71 E-value=0.00042 Score=75.01 Aligned_cols=120 Identities=17% Similarity=0.196 Sum_probs=66.7
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhhh-hhhhhhceeecCCCCCCccHHHHHHHHcCCch-hhhcccccccHHHHHHHH
Q 006974 347 VECETRVVVITGPNTGGKTASMKTLGLA-SLMSKAGLYLPAKNHPRLPWFDLILADIGDHQ-SLEQNLSTFSGHISRIVD 424 (623)
Q Consensus 347 l~~g~~~~~I~GpNgsGKSTlLk~igl~-~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~-~~~~~~stfS~g~~rl~~ 424 (623)
+.+| .++.|.|++|+|||||+.+++.. ........|+..+. ...-+..-..++|... .+. ...... ...+..
T Consensus 79 i~~G-slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE--s~~qi~~Ra~rlg~~~~~l~-l~~e~~--le~I~~ 152 (372)
T cd01121 79 LVPG-SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE--SPEQIKLRADRLGISTENLY-LLAETN--LEDILA 152 (372)
T ss_pred ccCC-eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc--CHHHHHHHHHHcCCCcccEE-EEccCc--HHHHHH
Confidence 5567 89999999999999999998322 11112345654443 1222222234555432 111 111111 112221
Q ss_pred HHHhcCCCcEEEEeCCCCC----CC-----HHHHHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974 425 ILELVSRESLVLIDEIGSG----TD-----PSEGVALATSILQYLRDRVGLAVVTTHY 473 (623)
Q Consensus 425 ~~~l~~~~~LlLLDEp~~g----lD-----~~~~~~l~~all~~l~~~~~~vii~TH~ 473 (623)
.. ...+|++|++|+..+- +| ......+...+.+..++.+.++|++.|-
T Consensus 153 ~i-~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghv 209 (372)
T cd01121 153 SI-EELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHV 209 (372)
T ss_pred HH-HhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeec
Confidence 11 2358999999997432 22 2223344454677777788999999885
No 490
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=0.00059 Score=79.41 Aligned_cols=104 Identities=19% Similarity=0.206 Sum_probs=62.0
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--hhceeecCCCCCCccHHHHHH---HHcCCchhhhcccccc
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--KAGLYLPAKNHPRLPWFDLIL---ADIGDHQSLEQNLSTF 415 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--~~G~~vp~~~~~~l~~~d~i~---~~ig~~~~~~~~~stf 415 (623)
+.++.+..| ++++++||||+||||++..+ +...... +...++..+. ..++.++++. ..+|..-..-.
T Consensus 177 ~~~~~~~~g-~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt-~RigA~eQL~~~a~~~gvpv~~~~----- 249 (767)
T PRK14723 177 DEDALLAQG-GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDS-FRIGALEQLRIYGRILGVPVHAVK----- 249 (767)
T ss_pred CCCcccCCC-eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcc-cchHHHHHHHHHHHhCCCCccccC-----
Confidence 345556667 89999999999999999999 4433221 1234566654 4666666553 23333211111
Q ss_pred cHHHHHHHHHHHhcCCCcEEEEeCCCCC-CCHHHHHHHHH
Q 006974 416 SGHISRIVDILELVSRESLVLIDEIGSG-TDPSEGVALAT 454 (623)
Q Consensus 416 S~g~~rl~~~~~l~~~~~LlLLDEp~~g-lD~~~~~~l~~ 454 (623)
+ ...+..++..+.+.++||+|=||+. .|......+..
T Consensus 250 ~--~~~l~~al~~~~~~D~VLIDTAGRs~~d~~l~eel~~ 287 (767)
T PRK14723 250 D--AADLRFALAALGDKHLVLIDTVGMSQRDRNVSEQIAM 287 (767)
T ss_pred C--HHHHHHHHHHhcCCCEEEEeCCCCCccCHHHHHHHHH
Confidence 1 1234444555567799999988844 56554444433
No 491
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.62 E-value=8.5e-05 Score=72.57 Aligned_cols=119 Identities=13% Similarity=0.109 Sum_probs=75.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCC-------CCccHHHHHHHHcCCchhhhcccccccHHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH-------PRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDI 425 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~-------~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~ 425 (623)
+++|||.-||||||+.+.+.-. .|+.+-.... ..-+.+..+...+|.. .++ -.|...|..++
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~-----~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~-i~~-----~~g~idr~~L~ 69 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADK-----YHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQ-ILN-----EDGELDRKALG 69 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHh-----cCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHH-HhC-----CCCCCCHHHHH
Confidence 4799999999999999988211 1122221110 0113355666666621 111 12444578888
Q ss_pred HHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh---HHhhccccce
Q 006974 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD---LSCLKDKDTR 485 (623)
Q Consensus 426 ~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~---l~~~~~~~~~ 485 (623)
.....+|..+..+| +.++|.-...+...+ ..+...+.++|+.+|.+. +..+|+.++.
T Consensus 70 ~~vf~~~~~~~~le--~ilhP~i~~~i~~~i-~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~ 129 (188)
T TIGR00152 70 ERVFNDPEELKWLN--NLLHPLIREWMKKLL-AQFQSKLAYVLLDVPLLFENKLRSLCDRVIV 129 (188)
T ss_pred HHHhCCHHHHHHHH--HhhCHHHHHHHHHHH-HHhhcCCCEEEEEchHhhhCCcHHhCCEEEE
Confidence 88888998877776 889999999988744 444444578999999864 3445555433
No 492
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.62 E-value=0.00023 Score=73.14 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=23.6
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
.++..+..+..+++|+||||+||||+++.+
T Consensus 34 ~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l 63 (269)
T TIGR03015 34 YLEYGLSQREGFILITGEVGAGKTTLIRNL 63 (269)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHHHH
Confidence 344445555358999999999999999998
No 493
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.60 E-value=0.00076 Score=67.51 Aligned_cols=127 Identities=16% Similarity=0.203 Sum_probs=66.5
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhhhhhhh-------hhceeecCCCCCCccHHHHHHHHcCCc-hhhhccc---ccc
Q 006974 347 VECETRVVVITGPNTGGKTASMKTLGLASLMS-------KAGLYLPAKNHPRLPWFDLILADIGDH-QSLEQNL---STF 415 (623)
Q Consensus 347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a-------~~G~~vp~~~~~~l~~~d~i~~~ig~~-~~~~~~~---stf 415 (623)
++.| +++.|+||+|+||||++.+++...... ....|+-.+.......+.++....+.. +.+..++ ...
T Consensus 16 ~~~g-~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 16 IPTG-RITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CcCC-cEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 5567 899999999999999999984443322 222455544322222233444443322 1111111 112
Q ss_pred cHHHH-H-HHHHHH--hcCCCcEEEEeCCCCCCC--------HHHHHH----HHHHHHHHHhcCCcEEEEEcCch
Q 006974 416 SGHIS-R-IVDILE--LVSRESLVLIDEIGSGTD--------PSEGVA----LATSILQYLRDRVGLAVVTTHYA 474 (623)
Q Consensus 416 S~g~~-r-l~~~~~--l~~~~~LlLLDEp~~glD--------~~~~~~----l~~all~~l~~~~~~vii~TH~~ 474 (623)
+.++. . +..+.. ...++++|++|=.+.=.. ..++.. +...+.....+.++++|+++|-.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~~ 169 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQVR 169 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEEe
Confidence 22222 1 222211 135788999999875321 122222 23334444456788999988864
No 494
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.00087 Score=72.37 Aligned_cols=85 Identities=18% Similarity=0.272 Sum_probs=47.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhhhh-hhhhceeecCCCCCCccHHHHHHH---HcCCchhhhcccccccHHHHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILA---DIGDHQSLEQNLSTFSGHISRIVDILE 427 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~igl~~~-~a~~G~~vp~~~~~~l~~~d~i~~---~ig~~~~~~~~~stfS~g~~rl~~~~~ 427 (623)
.+++|+||||+||||++..++.... ......++-++. .++..++++-. .+|..-.. ..+. ..+..++.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt-~RiaAvEQLk~yae~lgipv~v-----~~d~--~~L~~aL~ 313 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDH-SRIGTVQQLQDYVKTIGFEVIA-----VRDE--AAMTRALT 313 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCC-cchHHHHHHHHHhhhcCCcEEe-----cCCH--HHHHHHHH
Confidence 6899999999999999999953221 111223555554 34555666543 22321110 1111 12222322
Q ss_pred -h--cCCCcEEEEeCCCCCC
Q 006974 428 -L--VSRESLVLIDEIGSGT 444 (623)
Q Consensus 428 -l--~~~~~LlLLDEp~~gl 444 (623)
+ ..+.++||+|-||+.-
T Consensus 314 ~lk~~~~~DvVLIDTaGRs~ 333 (436)
T PRK11889 314 YFKEEARVDYILIDTAGKNY 333 (436)
T ss_pred HHHhccCCCEEEEeCccccC
Confidence 2 2357999999888744
No 495
>PRK06526 transposase; Provisional
Probab=97.57 E-value=0.00026 Score=72.74 Aligned_cols=104 Identities=22% Similarity=0.276 Sum_probs=59.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHh
Q 006974 349 CETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILEL 428 (623)
Q Consensus 349 ~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l 428 (623)
.+ +.++|+||.|+|||+|...+|.-.. +.|.- +.+.-...++..+.... ... .+...+..
T Consensus 97 ~~-~nlll~Gp~GtGKThLa~al~~~a~--~~g~~------v~f~t~~~l~~~l~~~~----~~~-------~~~~~l~~ 156 (254)
T PRK06526 97 GK-ENVVFLGPPGTGKTHLAIGLGIRAC--QAGHR------VLFATAAQWVARLAAAH----HAG-------RLQAELVK 156 (254)
T ss_pred cC-ceEEEEeCCCCchHHHHHHHHHHHH--HCCCc------hhhhhHHHHHHHHHHHH----hcC-------cHHHHHHH
Confidence 44 6799999999999999999954332 12311 11111223333332110 001 11112223
Q ss_pred cCCCcEEEEeCCCCC-CCHHHHHHHHHHHHHHHhcCCcEEEEEcCch
Q 006974 429 VSRESLVLIDEIGSG-TDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (623)
Q Consensus 429 ~~~~~LlLLDEp~~g-lD~~~~~~l~~all~~l~~~~~~vii~TH~~ 474 (623)
..++++||+||++.- .++.....+.. +++...++ ..+|++|+..
T Consensus 157 l~~~dlLIIDD~g~~~~~~~~~~~L~~-li~~r~~~-~s~IitSn~~ 201 (254)
T PRK06526 157 LGRYPLLIVDEVGYIPFEPEAANLFFQ-LVSSRYER-ASLIVTSNKP 201 (254)
T ss_pred hccCCEEEEcccccCCCCHHHHHHHHH-HHHHHHhc-CCEEEEcCCC
Confidence 467899999999864 56666666666 55544444 4578888874
No 496
>PRK06893 DNA replication initiation factor; Validated
Probab=97.56 E-value=0.00037 Score=70.42 Aligned_cols=94 Identities=17% Similarity=0.337 Sum_probs=57.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhhhhhh-hhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcC
Q 006974 352 RVVVITGPNTGGKTASMKTLGLASLMS-KAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVS 430 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~igl~~~~a-~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~ 430 (623)
..+.|.||.|+|||+|+.++|-..... ....|++.... + .++. .+.....
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~------~-----------------~~~~------~~~~~~~ 90 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS------Q-----------------YFSP------AVLENLE 90 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh------h-----------------hhhH------HHHhhcc
Confidence 568999999999999999995432211 11123332210 0 0000 1122345
Q ss_pred CCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974 431 RESLVLIDEIGSGT-DPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (623)
Q Consensus 431 ~~~LlLLDEp~~gl-D~~~~~~l~~all~~l~~~~~~vii~TH~~~ 475 (623)
+.++|+|||+.... +......+.. +++...+.+.++|++|++..
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~-l~n~~~~~~~~illits~~~ 135 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFD-LFNRIKEQGKTLLLISADCS 135 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHH-HHHHHHHcCCcEEEEeCCCC
Confidence 77999999998865 4444455666 67777777777777666643
No 497
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.55 E-value=0.0013 Score=76.53 Aligned_cols=43 Identities=19% Similarity=0.326 Sum_probs=32.6
Q ss_pred EEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 327 MTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 327 l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
+.+.|+...+|.. .++|....+..+++|+||||+||||+|+++
T Consensus 6 l~l~nf~~~~~~~--~~~~~~~~~~~~~~i~G~Ng~GKttll~ai 48 (650)
T TIGR03185 6 LTLENFGPYRGRQ--TFDLSPSSPKPIILIGGLNGAGKTTLLDAI 48 (650)
T ss_pred EEEeceEEEcCCc--eeeeecCCCCeEEEEECCCCCCHHHHHHHH
Confidence 5677776655542 445555555459999999999999999999
No 498
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.54 E-value=0.00064 Score=67.33 Aligned_cols=123 Identities=22% Similarity=0.238 Sum_probs=64.7
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhhhhh-hhhhceeecCCCCCCccHHHHHHHHcCCchhhhcc---cccccHHH--H
Q 006974 347 VECETRVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQN---LSTFSGHI--S 420 (623)
Q Consensus 347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~-~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~---~stfS~g~--~ 420 (623)
++.| .++.|+||+|+||||+.-+++.... ......|+..++ .....+.++.... .+....+ ...++... .
T Consensus 9 i~~g-~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~-~~~~rl~~~~~~~--~~~~~~~i~~~~~~~~~~~~~ 84 (209)
T TIGR02237 9 VERG-TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG-LSPERFKQIAEDR--PERALSNFIVFEVFDFDEQGV 84 (209)
T ss_pred CCCC-eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CCHHHHHHHHHhC--hHHHhcCEEEEECCCHHHHHH
Confidence 4567 8999999999999999988743322 223456777654 1222222222211 0111000 01122111 1
Q ss_pred HHHHHHHhc--CCCcEEEEeCCCCCCCHH------H-HHHH---HHHHHHHHhcCCcEEEEEcCc
Q 006974 421 RIVDILELV--SRESLVLIDEIGSGTDPS------E-GVAL---ATSILQYLRDRVGLAVVTTHY 473 (623)
Q Consensus 421 rl~~~~~l~--~~~~LlLLDEp~~glD~~------~-~~~l---~~all~~l~~~~~~vii~TH~ 473 (623)
.+..+...+ .++++|++|-.++-.... + ...+ ...+....++.++++|+|+|-
T Consensus 85 ~~~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~ 149 (209)
T TIGR02237 85 AIQKTSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQV 149 (209)
T ss_pred HHHHHHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEccc
Confidence 233333332 368999999998642211 0 1122 222444446778899999885
No 499
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.53 E-value=0.0003 Score=76.88 Aligned_cols=102 Identities=22% Similarity=0.252 Sum_probs=56.4
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhce-eecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHH--H
Q 006974 348 ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGL-YLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIV--D 424 (623)
Q Consensus 348 ~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~-~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~--~ 424 (623)
.++ +.++|.||+|+|||++.|.++-. .+. ++ .+..- .+. .+.+. .+.+.+. +
T Consensus 177 ~~p-kgvLL~GppGTGKT~LAkalA~~-----l~~~fi------~i~~s-~l~---------~k~~g---e~~~~lr~lf 231 (398)
T PTZ00454 177 DPP-RGVLLYGPPGTGKTMLAKAVAHH-----TTATFI------RVVGS-EFV---------QKYLG---EGPRMVRDVF 231 (398)
T ss_pred CCC-ceEEEECCCCCCHHHHHHHHHHh-----cCCCEE------EEehH-HHH---------HHhcc---hhHHHHHHHH
Confidence 344 56899999999999999999221 110 11 11100 011 01110 0112222 2
Q ss_pred HHHhcCCCcEEEEeCC----------CCCCCHHHHHHHHHHHHHHHhc----CCcEEEEEcCchh
Q 006974 425 ILELVSRESLVLIDEI----------GSGTDPSEGVALATSILQYLRD----RVGLAVVTTHYAD 475 (623)
Q Consensus 425 ~~~l~~~~~LlLLDEp----------~~glD~~~~~~l~~all~~l~~----~~~~vii~TH~~~ 475 (623)
..+....|.+|++||+ .+|.|......+.. ++..+.. .+..+|++||+.+
T Consensus 232 ~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~-LL~~ld~~~~~~~v~VI~aTN~~d 295 (398)
T PTZ00454 232 RLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLE-LLNQMDGFDQTTNVKVIMATNRAD 295 (398)
T ss_pred HHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHH-HHHHhhccCCCCCEEEEEecCCch
Confidence 2334578999999993 44556555555554 5555432 2457899999875
No 500
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.52 E-value=0.0012 Score=73.70 Aligned_cols=100 Identities=23% Similarity=0.297 Sum_probs=55.5
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhhhhhh---hhhceeecCCCCCCccHHHHHHHHcCCchhhhcccc-cccHHHHHH
Q 006974 347 VECETRVVVITGPNTGGKTASMKTLGLASLM---SKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLS-TFSGHISRI 422 (623)
Q Consensus 347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~---a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s-tfS~g~~rl 422 (623)
+..| ++++|+||+|+||||++..++..... .+...++..+. ..++..+++...-.. +.-.+. ..+. ..+
T Consensus 347 l~~G-~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDt-yRigA~EQLk~ya~i---Lgv~v~~a~d~--~~L 419 (559)
T PRK12727 347 LERG-GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDT-QRVGGREQLHSYGRQ---LGIAVHEADSA--ESL 419 (559)
T ss_pred ccCC-CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccc-ccccHHHHHHHhhcc---cCceeEecCcH--HHH
Confidence 4567 89999999999999999888432222 12334555553 344444444322111 000111 1111 133
Q ss_pred HHHHHhcCCCcEEEEeCCCCC-CCHHHHHHHH
Q 006974 423 VDILELVSRESLVLIDEIGSG-TDPSEGVALA 453 (623)
Q Consensus 423 ~~~~~l~~~~~LlLLDEp~~g-lD~~~~~~l~ 453 (623)
..++....+.++||+|.|+.+ .|......+.
T Consensus 420 ~~aL~~l~~~DLVLIDTaG~s~~D~~l~eeL~ 451 (559)
T PRK12727 420 LDLLERLRDYKLVLIDTAGMGQRDRALAAQLN 451 (559)
T ss_pred HHHHHHhccCCEEEecCCCcchhhHHHHHHHH
Confidence 344444567899999999875 4544444443
Done!