Query 006974
Match_columns 623
No_of_seqs 434 out of 4492
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 13:52:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wb9_A DNA mismatch repair pro 100.0 2.8E-70 9.5E-75 635.6 33.8 482 1-538 302-796 (800)
2 3thx_B DNA mismatch repair pro 100.0 6.6E-64 2.2E-68 586.8 40.2 490 1-538 355-877 (918)
3 1ewq_A DNA mismatch repair pro 100.0 8E-64 2.7E-68 578.4 40.1 468 1-539 283-763 (765)
4 3thx_A DNA mismatch repair pro 100.0 1.1E-63 3.9E-68 586.4 39.7 494 1-541 337-854 (934)
5 2o8b_B DNA mismatch repair pro 100.0 1.6E-62 5.3E-67 583.2 32.3 491 1-541 431-988 (1022)
6 2pcj_A ABC transporter, lipopr 100.0 1.7E-29 5.7E-34 252.5 18.1 167 326-494 4-220 (224)
7 3gfo_A Cobalt import ATP-bindi 100.0 1.7E-29 5.9E-34 259.8 17.0 167 326-494 7-225 (275)
8 1vpl_A ABC transporter, ATP-bi 100.0 3.4E-29 1.2E-33 255.2 18.9 168 325-494 14-227 (256)
9 4g1u_C Hemin import ATP-bindin 100.0 3E-29 1E-33 257.0 17.3 167 326-494 11-229 (266)
10 3tif_A Uncharacterized ABC tra 100.0 4.9E-29 1.7E-33 250.9 17.8 166 327-494 2-226 (235)
11 2olj_A Amino acid ABC transpor 100.0 7.3E-29 2.5E-33 253.6 19.1 167 326-494 24-240 (263)
12 1b0u_A Histidine permease; ABC 100.0 8.9E-29 3E-33 253.0 18.1 167 326-494 6-234 (262)
13 3fvq_A Fe(3+) IONS import ATP- 100.0 1.1E-28 3.8E-33 261.8 18.9 168 326-494 4-220 (359)
14 1ji0_A ABC transporter; ATP bi 100.0 8.8E-29 3E-33 249.9 16.8 167 326-494 6-220 (240)
15 1g6h_A High-affinity branched- 100.0 1.5E-28 5.2E-33 250.6 18.0 167 326-494 7-234 (257)
16 3tui_C Methionine import ATP-b 100.0 2E-28 6.9E-33 260.0 18.5 168 325-494 23-245 (366)
17 1z47_A CYSA, putative ABC-tran 100.0 4.1E-28 1.4E-32 257.5 17.9 171 323-494 11-227 (355)
18 2nq2_C Hypothetical ABC transp 100.0 5E-28 1.7E-32 246.2 17.6 166 326-494 4-209 (253)
19 3rlf_A Maltose/maltodextrin im 100.0 4.7E-28 1.6E-32 258.7 17.6 167 326-494 3-215 (381)
20 2yz2_A Putative ABC transporte 100.0 6.1E-28 2.1E-32 247.4 17.3 167 326-494 2-219 (266)
21 2yyz_A Sugar ABC transporter, 100.0 1E-27 3.6E-32 254.8 18.8 168 326-494 3-215 (359)
22 2ihy_A ABC transporter, ATP-bi 100.0 3.1E-28 1.1E-32 251.1 13.2 168 325-494 20-244 (279)
23 2ff7_A Alpha-hemolysin translo 99.9 2E-27 6.9E-32 240.9 18.3 166 326-494 7-224 (247)
24 2it1_A 362AA long hypothetical 99.9 1.4E-27 4.8E-32 254.2 17.2 168 326-494 3-215 (362)
25 2onk_A Molybdate/tungstate ABC 99.9 1E-27 3.6E-32 242.0 15.2 164 327-494 2-208 (240)
26 2ixe_A Antigen peptide transpo 99.9 1.3E-27 4.5E-32 245.5 16.1 168 325-494 15-237 (271)
27 3d31_A Sulfate/molybdate ABC t 99.9 1.8E-27 6E-32 252.3 17.4 167 327-494 2-209 (348)
28 2d2e_A SUFC protein; ABC-ATPas 99.9 8.8E-28 3E-32 244.0 13.0 167 326-494 3-225 (250)
29 1g29_1 MALK, maltose transport 99.9 3.9E-27 1.4E-31 251.8 18.3 168 326-494 3-221 (372)
30 1v43_A Sugar-binding transport 99.9 2.1E-27 7.1E-32 253.7 16.0 168 326-494 11-223 (372)
31 1oxx_K GLCV, glucose, ABC tran 99.9 2.7E-27 9.1E-32 251.6 15.9 168 326-494 3-222 (353)
32 2zu0_C Probable ATP-dependent 99.9 5.8E-27 2E-31 240.2 16.4 167 326-494 20-246 (267)
33 1sgw_A Putative ABC transporte 99.9 2.2E-27 7.5E-32 235.4 12.3 157 326-486 10-206 (214)
34 2qi9_C Vitamin B12 import ATP- 99.9 1E-26 3.5E-31 235.9 16.7 164 326-494 4-214 (249)
35 1mv5_A LMRA, multidrug resista 99.9 3.2E-27 1.1E-31 238.9 12.3 164 327-493 2-217 (243)
36 2pjz_A Hypothetical protein ST 99.9 9.8E-27 3.4E-31 237.8 15.9 161 327-494 2-207 (263)
37 2ghi_A Transport protein; mult 99.9 2E-26 6.8E-31 235.3 17.5 167 325-494 16-234 (260)
38 2pze_A Cystic fibrosis transme 99.9 4.4E-27 1.5E-31 235.7 11.5 168 325-494 5-210 (229)
39 2cbz_A Multidrug resistance-as 99.9 8.3E-27 2.8E-31 235.0 11.7 167 326-494 3-209 (237)
40 3nh6_A ATP-binding cassette SU 99.9 3.4E-26 1.2E-30 238.4 16.7 167 325-494 52-269 (306)
41 3gd7_A Fusion complex of cysti 99.9 1.4E-25 5E-30 240.9 13.9 166 325-494 18-234 (390)
42 2bbs_A Cystic fibrosis transme 99.9 9.8E-25 3.3E-29 226.0 13.1 167 325-494 39-239 (290)
43 3ozx_A RNAse L inhibitor; ATP 99.9 2.8E-24 9.7E-29 240.4 13.6 163 325-488 268-461 (538)
44 3b5x_A Lipid A export ATP-bind 99.9 7.4E-24 2.5E-28 239.9 16.6 167 325-494 340-559 (582)
45 1yqt_A RNAse L inhibitor; ATP- 99.9 6E-24 2E-28 238.1 15.7 163 325-488 286-477 (538)
46 3bk7_A ABC transporter ATP-bin 99.9 9.9E-24 3.4E-28 239.0 17.1 163 325-488 356-547 (607)
47 3b60_A Lipid A export ATP-bind 99.9 1.1E-23 3.7E-28 238.5 17.4 167 325-494 340-559 (582)
48 1yqt_A RNAse L inhibitor; ATP- 99.9 9.6E-24 3.3E-28 236.4 16.2 159 327-488 21-233 (538)
49 3bk7_A ABC transporter ATP-bin 99.9 2.1E-23 7.1E-28 236.4 17.4 156 330-488 95-303 (607)
50 2yl4_A ATP-binding cassette SU 99.9 2.7E-23 9.3E-28 235.9 17.5 167 325-494 339-562 (595)
51 3qf4_B Uncharacterized ABC tra 99.9 2.1E-23 7.1E-28 236.9 16.1 167 325-494 353-570 (598)
52 3qf4_A ABC transporter, ATP-bi 99.9 4.3E-23 1.5E-27 233.7 17.4 166 325-494 340-558 (587)
53 4a82_A Cystic fibrosis transme 99.9 3.4E-23 1.2E-27 234.3 16.5 167 325-494 338-556 (578)
54 3j16_B RLI1P; ribosome recycli 99.9 9E-23 3.1E-27 230.9 16.2 155 331-488 82-296 (608)
55 2iw3_A Elongation factor 3A; a 99.9 1.8E-22 6.1E-27 236.8 18.9 162 326-492 435-624 (986)
56 2iw3_A Elongation factor 3A; a 99.9 4.1E-23 1.4E-27 242.2 10.1 94 396-493 881-978 (986)
57 3j16_B RLI1P; ribosome recycli 99.9 1.5E-22 5E-27 229.2 13.9 164 330-493 350-550 (608)
58 3ozx_A RNAse L inhibitor; ATP 99.9 1.1E-21 3.8E-26 219.4 16.4 155 331-488 4-212 (538)
59 3ux8_A Excinuclease ABC, A sub 99.8 3.4E-21 1.1E-25 221.6 14.4 95 399-494 186-290 (670)
60 3g5u_A MCG1178, multidrug resi 99.8 1.2E-20 4E-25 230.7 16.9 168 324-494 1028-1250(1284)
61 3g5u_A MCG1178, multidrug resi 99.8 3.1E-20 1.1E-24 227.0 15.7 166 325-493 386-604 (1284)
62 3ux8_A Excinuclease ABC, A sub 99.8 8.2E-20 2.8E-24 210.1 15.0 95 399-494 527-632 (670)
63 4f4c_A Multidrug resistance pr 99.8 1.2E-19 4E-24 222.4 14.1 167 324-494 413-633 (1321)
64 4f4c_A Multidrug resistance pr 99.8 1E-19 3.4E-24 223.0 11.4 167 324-494 1074-1296(1321)
65 2r6f_A Excinuclease ABC subuni 99.8 4.6E-19 1.6E-23 206.7 15.7 97 397-494 827-934 (972)
66 2vf7_A UVRA2, excinuclease ABC 99.8 5.2E-19 1.8E-23 205.7 15.6 97 397-494 712-819 (842)
67 2ygr_A Uvrabc system protein A 99.8 8.5E-19 2.9E-23 205.1 16.8 97 397-494 845-952 (993)
68 4gp7_A Metallophosphoesterase; 99.8 1E-19 3.5E-24 173.7 5.3 133 342-478 1-163 (171)
69 4aby_A DNA repair protein RECN 99.8 1.8E-18 6.1E-23 187.3 14.6 108 415-534 296-412 (415)
70 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 2.6E-18 8.8E-23 183.6 15.3 83 409-492 274-363 (365)
71 3pih_A Uvrabc system protein A 99.8 3.2E-18 1.1E-22 200.6 15.4 97 397-494 787-894 (916)
72 2npi_A Protein CLP1; CLP1-PCF1 99.7 1.3E-19 4.5E-24 198.9 -3.7 156 325-492 117-329 (460)
73 1e69_A Chromosome segregation 99.7 1.8E-16 6.2E-21 166.3 13.3 83 409-493 214-303 (322)
74 1ye8_A Protein THEP1, hypothet 99.7 2.8E-17 9.7E-22 158.1 4.1 121 353-482 2-152 (178)
75 3b85_A Phosphate starvation-in 99.6 7.3E-18 2.5E-22 166.2 -2.4 122 347-478 19-162 (208)
76 3qkt_A DNA double-strand break 99.6 1.4E-15 4.9E-20 160.7 14.2 78 409-487 243-327 (339)
77 1tq4_A IIGP1, interferon-induc 99.5 3.5E-16 1.2E-20 169.0 -1.0 139 342-484 41-248 (413)
78 1tf7_A KAIC; homohexamer, hexa 99.5 4.8E-15 1.7E-19 165.6 7.9 159 327-490 258-444 (525)
79 2ehv_A Hypothetical protein PH 99.5 3.2E-14 1.1E-18 142.1 10.5 138 346-487 26-206 (251)
80 1znw_A Guanylate kinase, GMP k 99.5 4.5E-16 1.5E-20 152.7 -3.0 59 427-486 137-201 (207)
81 2obl_A ESCN; ATPase, hydrolase 99.5 1.1E-14 3.7E-19 154.4 3.2 153 326-494 45-247 (347)
82 2pt7_A CAG-ALFA; ATPase, prote 99.5 4.3E-15 1.5E-19 156.5 -1.2 136 329-489 151-290 (330)
83 2v9p_A Replication protein E1; 99.4 1E-15 3.5E-20 159.1 -7.8 139 326-493 101-257 (305)
84 4a74_A DNA repair and recombin 99.4 2.2E-13 7.4E-18 134.3 9.2 143 346-489 21-200 (231)
85 1cr0_A DNA primase/helicase; R 99.4 7.8E-13 2.7E-17 136.5 12.5 148 342-491 27-237 (296)
86 2w0m_A SSO2452; RECA, SSPF, un 99.4 1.6E-12 5.6E-17 127.9 13.6 140 346-488 19-191 (235)
87 1f2t_B RAD50 ABC-ATPase; DNA d 99.4 8.1E-13 2.8E-17 123.1 10.2 79 407-486 50-135 (148)
88 1tf7_A KAIC; homohexamer, hexa 99.4 7.6E-14 2.6E-18 155.9 3.3 142 342-488 30-209 (525)
89 1nlf_A Regulatory protein REPA 99.4 1.1E-12 3.7E-17 134.4 10.2 127 346-476 26-183 (279)
90 3aez_A Pantothenate kinase; tr 99.4 9.7E-15 3.3E-19 152.6 -5.2 149 324-484 41-240 (312)
91 3b9q_A Chloroplast SRP recepto 99.4 3.2E-13 1.1E-17 140.4 6.2 121 342-473 92-256 (302)
92 2eyu_A Twitching motility prot 99.4 8.4E-14 2.9E-18 141.9 0.5 120 342-486 19-145 (261)
93 2dpy_A FLII, flagellum-specifi 99.3 2.2E-13 7.6E-18 148.6 3.5 156 326-494 131-336 (438)
94 3ec2_A DNA replication protein 99.3 5.2E-13 1.8E-17 127.5 4.7 110 343-474 31-143 (180)
95 2og2_A Putative signal recogni 99.3 1.9E-12 6.5E-17 137.5 8.0 121 342-473 149-313 (359)
96 2cvh_A DNA repair and recombin 99.3 2.2E-11 7.6E-16 119.0 14.0 140 346-488 16-184 (220)
97 3pih_A Uvrabc system protein A 99.2 2.1E-11 7.2E-16 143.1 10.4 97 397-494 446-552 (916)
98 3sop_A Neuronal-specific septi 99.2 1.4E-12 4.9E-17 133.4 0.4 114 353-475 4-151 (270)
99 2r6f_A Excinuclease ABC subuni 99.2 3.4E-11 1.1E-15 140.8 11.0 96 398-494 487-592 (972)
100 2ygr_A Uvrabc system protein A 99.2 4.2E-11 1.4E-15 140.5 10.5 94 399-493 505-608 (993)
101 2vf7_A UVRA2, excinuclease ABC 99.2 5.6E-11 1.9E-15 138.4 11.3 96 398-494 362-467 (842)
102 1z6g_A Guanylate kinase; struc 99.2 4.2E-13 1.4E-17 132.9 -5.7 127 342-475 15-195 (218)
103 2jeo_A Uridine-cytidine kinase 99.2 1.1E-11 3.7E-16 124.6 4.6 122 342-478 17-170 (245)
104 1pzn_A RAD51, DNA repair and r 99.2 9.7E-11 3.3E-15 124.2 11.8 131 344-475 125-287 (349)
105 3asz_A Uridine kinase; cytidin 99.2 1.5E-13 5.2E-18 134.3 -9.7 123 348-474 4-161 (211)
106 3jvv_A Twitching mobility prot 99.1 7.3E-12 2.5E-16 133.0 2.2 124 346-487 119-244 (356)
107 1n0w_A DNA repair protein RAD5 99.1 3E-10 1E-14 112.7 12.7 129 346-475 20-175 (243)
108 2i3b_A HCR-ntpase, human cance 99.1 3.2E-12 1.1E-16 123.9 -2.6 129 352-492 2-166 (189)
109 2kjq_A DNAA-related protein; s 99.1 1.9E-10 6.4E-15 107.0 9.0 88 349-473 35-124 (149)
110 4ad8_A DNA repair protein RECN 99.0 5.5E-10 1.9E-14 124.4 10.1 79 409-489 391-473 (517)
111 2qnr_A Septin-2, protein NEDD5 99.0 3.1E-11 1.1E-15 125.3 -0.3 128 330-475 2-168 (301)
112 1pui_A ENGB, probable GTP-bind 99.0 2.7E-10 9.1E-15 110.5 5.4 133 327-461 4-198 (210)
113 3kta_B Chromosome segregation 99.0 1.4E-09 4.7E-14 103.9 9.7 76 409-486 59-139 (173)
114 3szr_A Interferon-induced GTP- 99.0 1.1E-10 3.7E-15 132.5 2.0 48 429-476 144-198 (608)
115 2qag_C Septin-7; cell cycle, c 98.9 2E-10 6.8E-15 124.4 2.5 134 325-475 10-178 (418)
116 2ewv_A Twitching motility prot 98.9 1.8E-09 6.2E-14 115.3 9.6 121 346-485 132-255 (372)
117 1lw7_A Transcriptional regulat 98.9 1.5E-10 5E-15 123.3 -0.1 143 342-485 160-340 (365)
118 3lda_A DNA repair protein RAD5 98.8 1.5E-08 5E-13 109.2 11.6 127 346-473 174-327 (400)
119 2qag_B Septin-6, protein NEDD5 98.8 3.8E-09 1.3E-13 114.2 6.0 143 327-473 17-218 (427)
120 1s96_A Guanylate kinase, GMP k 98.8 4.9E-09 1.7E-13 103.8 6.2 118 345-476 11-142 (219)
121 1htw_A HI0065; nucleotide-bind 98.8 6.7E-10 2.3E-14 104.4 -0.2 55 329-393 10-66 (158)
122 1rj9_A FTSY, signal recognitio 98.8 3.3E-09 1.1E-13 110.2 4.8 116 349-475 101-259 (304)
123 1w1w_A Structural maintenance 98.7 1.8E-08 6.2E-13 109.5 9.7 78 409-487 328-410 (430)
124 2px0_A Flagellar biosynthesis 98.7 9.5E-08 3.2E-12 98.8 13.9 155 349-524 104-268 (296)
125 1sxj_E Activator 1 40 kDa subu 98.7 2.3E-08 7.9E-13 105.0 8.8 44 429-475 132-175 (354)
126 3auy_A DNA double-strand break 98.7 2.5E-08 8.6E-13 106.3 8.9 76 410-487 276-359 (371)
127 2gza_A Type IV secretion syste 98.6 4E-09 1.4E-13 112.2 0.3 137 328-486 137-299 (361)
128 2dr3_A UPF0273 protein PH0284; 98.6 9.2E-08 3.1E-12 94.7 9.8 138 346-487 19-195 (247)
129 2o5v_A DNA replication and rep 98.6 3.7E-08 1.3E-12 104.5 7.1 79 409-494 259-348 (359)
130 2zr9_A Protein RECA, recombina 98.6 3.5E-07 1.2E-11 96.8 14.4 121 347-474 58-198 (349)
131 1ls1_A Signal recognition part 98.5 3.6E-07 1.2E-11 94.4 11.3 122 330-460 80-209 (295)
132 2bbw_A Adenylate kinase 4, AK4 98.4 2.4E-08 8.2E-13 100.0 -0.1 30 429-458 162-195 (246)
133 1vma_A Cell division protein F 98.4 1.3E-06 4.5E-11 90.6 12.5 94 342-442 96-197 (306)
134 3e70_C DPA, signal recognition 98.4 6.2E-07 2.1E-11 94.0 8.9 27 348-375 127-154 (328)
135 1udx_A The GTP-binding protein 98.3 4.3E-08 1.5E-12 106.0 -1.2 127 342-480 149-316 (416)
136 1zp6_A Hypothetical protein AT 98.3 3.5E-08 1.2E-12 94.2 -2.3 25 346-371 5-29 (191)
137 1sq5_A Pantothenate kinase; P- 98.3 1.6E-07 5.3E-12 97.6 2.4 49 325-375 36-105 (308)
138 3hr8_A Protein RECA; alpha and 98.3 6.8E-06 2.3E-10 86.9 14.9 122 347-473 58-197 (356)
139 2yhs_A FTSY, cell division pro 98.3 2.6E-06 9E-11 93.4 11.7 33 342-375 285-318 (503)
140 2bdt_A BH3686; alpha-beta prot 98.3 1.3E-08 4.4E-13 97.4 -6.2 49 442-494 126-176 (189)
141 1odf_A YGR205W, hypothetical 3 98.2 1.9E-07 6.6E-12 96.2 0.9 99 349-448 30-169 (290)
142 1fnn_A CDC6P, cell division co 98.1 1.1E-05 3.8E-10 85.0 11.9 119 353-477 46-172 (389)
143 2r6a_A DNAB helicase, replicat 98.1 1E-05 3.5E-10 88.5 11.2 126 345-472 198-362 (454)
144 2qm8_A GTPase/ATPase; G protei 98.1 3.6E-07 1.2E-11 96.2 -1.4 49 327-376 30-81 (337)
145 3lnc_A Guanylate kinase, GMP k 98.0 1.3E-06 4.5E-11 86.3 2.7 29 342-371 19-47 (231)
146 1nij_A Hypothetical protein YJ 98.0 2.3E-06 7.7E-11 89.3 4.5 22 352-373 5-27 (318)
147 2xau_A PRE-mRNA-splicing facto 98.0 5E-06 1.7E-10 96.8 6.6 133 347-482 106-261 (773)
148 3tr0_A Guanylate kinase, GMP k 98.0 2.9E-06 1E-10 81.6 3.7 29 344-373 1-30 (205)
149 1v5w_A DMC1, meiotic recombina 98.0 2.9E-05 1E-09 81.7 11.5 129 346-475 118-275 (343)
150 2ce7_A Cell division protein F 97.9 3.2E-05 1.1E-09 85.0 11.4 107 342-475 43-165 (476)
151 3euj_A Chromosome partition pr 97.9 5.5E-06 1.9E-10 90.9 4.1 38 342-389 22-59 (483)
152 3nwj_A ATSK2; P loop, shikimat 97.9 2.8E-06 9.6E-11 85.6 1.2 45 326-371 17-68 (250)
153 2z43_A DNA repair and recombin 97.8 5.3E-05 1.8E-09 79.0 9.6 128 346-474 103-258 (324)
154 3kl4_A SRP54, signal recogniti 97.8 8.9E-05 3E-09 80.3 11.6 118 352-473 98-223 (433)
155 1u94_A RECA protein, recombina 97.8 0.00021 7.2E-09 75.5 13.8 122 347-474 60-200 (356)
156 3c8u_A Fructokinase; YP_612366 97.7 1.6E-05 5.5E-10 77.2 4.1 28 347-375 19-47 (208)
157 2z4s_A Chromosomal replication 97.7 2.2E-05 7.6E-10 85.4 5.0 102 352-474 131-237 (440)
158 2qby_A CDC6 homolog 1, cell di 97.7 1.2E-05 4.2E-10 84.3 2.7 120 352-476 46-175 (386)
159 1ni3_A YCHF GTPase, YCHF GTP-b 97.7 4.6E-07 1.6E-11 97.1 -8.5 56 431-489 139-199 (392)
160 2ius_A DNA translocase FTSK; n 97.7 2.2E-05 7.5E-10 86.7 4.6 29 342-371 159-187 (512)
161 1qhl_A Protein (cell division 97.7 1.8E-06 6.2E-11 85.7 -3.8 49 326-389 9-57 (227)
162 2rcn_A Probable GTPase ENGC; Y 97.7 1.4E-05 4.8E-10 84.5 2.7 102 342-462 208-346 (358)
163 4a1f_A DNAB helicase, replicat 97.7 9.4E-05 3.2E-09 77.6 8.9 118 346-473 42-165 (338)
164 1p9r_A General secretion pathw 97.7 7.2E-06 2.4E-10 88.7 0.3 46 326-374 143-191 (418)
165 1ixz_A ATP-dependent metallopr 97.7 5.2E-05 1.8E-09 75.6 6.6 41 328-371 27-69 (254)
166 3kta_A Chromosome segregation 97.6 2.5E-05 8.4E-10 73.8 3.7 28 342-371 19-46 (182)
167 1lvg_A Guanylate kinase, GMP k 97.6 1.9E-05 6.5E-10 76.3 2.9 26 348-374 2-28 (198)
168 2e87_A Hypothetical protein PH 97.6 2.8E-05 9.6E-10 82.1 4.2 113 352-474 168-292 (357)
169 1zu4_A FTSY; GTPase, signal re 97.6 0.00067 2.3E-08 70.6 14.1 33 342-375 97-130 (320)
170 3a00_A Guanylate kinase, GMP k 97.6 2.3E-05 7.7E-10 74.7 2.4 23 352-374 2-25 (186)
171 2w58_A DNAI, primosome compone 97.5 2.7E-05 9.3E-10 74.8 2.5 20 352-371 55-74 (202)
172 2x8a_A Nuclear valosin-contain 97.5 0.00015 5.2E-09 73.7 8.1 27 342-371 38-64 (274)
173 3pxg_A Negative regulator of g 97.5 0.00034 1.2E-08 76.6 11.4 50 568-617 396-445 (468)
174 2j41_A Guanylate kinase; GMP, 97.5 3.1E-05 1.1E-09 74.3 2.8 25 346-371 2-26 (207)
175 3uie_A Adenylyl-sulfate kinase 97.5 3.4E-05 1.2E-09 74.3 3.0 40 331-371 4-45 (200)
176 1in4_A RUVB, holliday junction 97.5 2.3E-05 8E-10 82.0 1.9 45 327-371 19-71 (334)
177 2i1q_A DNA repair and recombin 97.5 0.00033 1.1E-08 72.6 10.2 126 347-473 95-258 (322)
178 3k1j_A LON protease, ATP-depen 97.5 5.8E-06 2E-10 93.6 -3.9 38 333-371 41-80 (604)
179 1oix_A RAS-related protein RAB 97.5 7.4E-05 2.5E-09 71.2 4.4 36 422-459 154-189 (191)
180 1w1w_A Structural maintenance 97.4 5.2E-05 1.8E-09 82.1 3.2 40 327-371 7-46 (430)
181 3bos_A Putative DNA replicatio 97.4 0.00015 5E-09 70.7 5.8 94 349-473 51-147 (242)
182 3m6a_A ATP-dependent protease 97.4 1.8E-05 6.1E-10 88.5 -1.3 40 330-371 87-128 (543)
183 2oap_1 GSPE-2, type II secreti 97.4 4.7E-05 1.6E-09 84.4 1.8 29 342-371 252-280 (511)
184 1xp8_A RECA protein, recombina 97.3 0.0021 7.2E-08 68.1 14.2 122 347-474 71-211 (366)
185 1kgd_A CASK, peripheral plasma 97.3 9.2E-05 3.2E-09 70.1 3.4 22 349-371 4-25 (180)
186 3b9p_A CG5977-PA, isoform A; A 97.3 0.00062 2.1E-08 69.2 9.9 20 352-371 55-74 (297)
187 3bh0_A DNAB-like replicative h 97.3 0.00064 2.2E-08 70.5 9.5 122 346-474 64-191 (315)
188 2vhj_A Ntpase P4, P4; non- hyd 97.3 0.00054 1.8E-08 71.2 8.8 105 347-473 120-235 (331)
189 1f2t_A RAD50 ABC-ATPase; DNA d 97.3 0.00016 5.6E-09 66.6 4.3 27 344-372 18-44 (149)
190 4eun_A Thermoresistant glucoki 97.3 0.00012 4E-09 70.5 3.4 26 345-371 24-49 (200)
191 1l8q_A Chromosomal replication 97.2 0.00035 1.2E-08 72.2 6.9 101 352-473 38-140 (324)
192 4e22_A Cytidylate kinase; P-lo 97.2 0.0001 3.6E-09 73.8 2.5 32 348-388 25-59 (252)
193 2o5v_A DNA replication and rep 97.2 0.00016 5.5E-09 76.5 4.0 30 342-373 19-48 (359)
194 3llm_A ATP-dependent RNA helic 97.2 0.00059 2E-08 67.3 7.8 132 347-481 73-228 (235)
195 1u0l_A Probable GTPase ENGC; p 97.2 0.00012 4E-09 75.6 2.7 36 345-389 164-199 (301)
196 3vaa_A Shikimate kinase, SK; s 97.2 0.00018 6.1E-09 69.2 3.4 29 342-371 17-45 (199)
197 1sxj_C Activator 1 40 kDa subu 97.1 0.00029 9.9E-09 73.5 4.7 38 333-371 25-66 (340)
198 3tau_A Guanylate kinase, GMP k 97.1 0.00021 7.3E-09 69.3 3.5 23 348-371 6-28 (208)
199 1t9h_A YLOQ, probable GTPase E 97.1 0.00011 3.6E-09 76.2 1.1 35 345-388 168-202 (307)
200 1qvr_A CLPB protein; coiled co 97.1 0.0018 6.2E-08 76.1 11.6 21 352-372 192-212 (854)
201 3cf0_A Transitional endoplasmi 97.1 0.00075 2.6E-08 69.3 7.2 26 346-372 45-70 (301)
202 1njg_A DNA polymerase III subu 97.1 0.0021 7.2E-08 61.8 9.9 20 352-371 46-65 (250)
203 2v1u_A Cell division control p 97.0 0.00075 2.6E-08 70.6 7.1 119 352-475 45-178 (387)
204 3tqc_A Pantothenate kinase; bi 97.0 8.8E-05 3E-09 77.3 -0.2 22 353-374 94-116 (321)
205 3qks_A DNA double-strand break 97.0 0.00042 1.4E-08 67.1 4.7 27 344-372 18-44 (203)
206 2yv5_A YJEQ protein; hydrolase 97.0 0.00029 9.8E-09 72.7 3.6 34 346-389 161-194 (302)
207 2qgz_A Helicase loader, putati 97.0 0.00018 6.1E-09 74.5 2.1 101 352-473 153-257 (308)
208 2dhr_A FTSH; AAA+ protein, hex 97.0 0.00062 2.1E-08 75.1 6.5 40 329-371 43-84 (499)
209 1j8m_F SRP54, signal recogniti 97.0 0.0028 9.5E-08 65.2 11.0 40 331-372 79-119 (297)
210 1ypw_A Transitional endoplasmi 97.0 0.0008 2.7E-08 78.6 7.5 27 344-371 232-258 (806)
211 1knq_A Gluconate kinase; ALFA/ 97.0 0.00039 1.3E-08 64.9 3.7 22 349-371 7-28 (175)
212 1iy2_A ATP-dependent metallopr 97.0 0.00013 4.5E-09 73.9 0.4 41 328-371 51-93 (278)
213 2vp4_A Deoxynucleoside kinase; 97.0 0.0003 1E-08 69.3 3.0 25 346-371 16-40 (230)
214 3io5_A Recombination and repai 96.9 0.0097 3.3E-07 61.6 13.6 123 347-475 26-173 (333)
215 1kag_A SKI, shikimate kinase I 96.9 0.00037 1.3E-08 64.8 2.7 20 352-371 5-24 (173)
216 1lv7_A FTSH; alpha/beta domain 96.9 0.0028 9.5E-08 63.0 9.3 20 352-371 46-65 (257)
217 2p67_A LAO/AO transport system 96.9 0.00047 1.6E-08 72.3 3.5 44 330-374 34-80 (341)
218 1rz3_A Hypothetical protein rb 96.9 0.0004 1.4E-08 66.8 2.8 24 347-371 19-42 (201)
219 3ney_A 55 kDa erythrocyte memb 96.9 0.00053 1.8E-08 66.4 3.5 23 348-371 17-39 (197)
220 3lxx_A GTPase IMAP family memb 96.8 0.00046 1.6E-08 68.1 3.2 45 428-473 109-155 (239)
221 2ffh_A Protein (FFH); SRP54, s 96.8 0.0039 1.3E-07 67.3 10.4 39 331-372 81-119 (425)
222 2lw1_A ABC transporter ATP-bin 96.8 0.0048 1.7E-07 51.8 8.3 60 556-615 19-79 (89)
223 1svm_A Large T antigen; AAA+ f 96.8 0.00048 1.6E-08 73.3 2.7 29 342-371 161-189 (377)
224 2dy1_A Elongation factor G; tr 96.8 0.0015 5.1E-08 74.7 6.9 119 345-476 4-138 (665)
225 3cmw_A Protein RECA, recombina 96.7 0.01 3.5E-07 73.8 14.4 121 347-473 729-868 (1706)
226 3h4m_A Proteasome-activating n 96.7 0.0039 1.3E-07 62.8 9.0 23 348-371 49-71 (285)
227 4fcw_A Chaperone protein CLPB; 96.7 0.0032 1.1E-07 64.1 8.2 21 352-372 48-68 (311)
228 2b8t_A Thymidine kinase; deoxy 96.7 0.0019 6.4E-08 63.7 6.0 123 349-485 11-148 (223)
229 3dm5_A SRP54, signal recogniti 96.7 0.0084 2.9E-07 64.9 11.6 99 352-454 101-206 (443)
230 3t15_A Ribulose bisphosphate c 96.6 0.0024 8.3E-08 65.3 6.9 20 352-371 37-56 (293)
231 2qt1_A Nicotinamide riboside k 96.6 0.001 3.4E-08 64.0 3.6 25 346-371 17-41 (207)
232 2q6t_A DNAB replication FORK h 96.6 0.0099 3.4E-07 64.4 11.7 118 346-472 196-318 (444)
233 1jjv_A Dephospho-COA kinase; P 96.6 0.001 3.5E-08 63.9 3.2 20 352-371 3-22 (206)
234 2f1r_A Molybdopterin-guanine d 96.6 0.00036 1.2E-08 66.0 -0.1 20 352-371 3-22 (171)
235 2p65_A Hypothetical protein PF 96.5 0.00027 9.1E-09 65.8 -1.2 20 352-371 44-63 (187)
236 1sxj_D Activator 1 41 kDa subu 96.5 0.0027 9.2E-08 65.8 6.4 43 430-475 132-174 (353)
237 3cmw_A Protein RECA, recombina 96.5 0.018 6.1E-07 71.7 14.4 122 347-474 380-520 (1706)
238 1y63_A LMAJ004144AAA protein; 96.5 0.0014 4.7E-08 62.1 3.6 29 342-371 2-30 (184)
239 1jbk_A CLPB protein; beta barr 96.5 0.00034 1.2E-08 65.1 -0.7 20 352-371 44-63 (195)
240 3auy_A DNA double-strand break 96.5 0.0011 3.9E-08 70.1 3.3 30 342-373 18-47 (371)
241 2r8r_A Sensor protein; KDPD, P 96.5 0.00097 3.3E-08 65.8 2.4 122 349-478 4-131 (228)
242 2if2_A Dephospho-COA kinase; a 96.5 0.0012 4.2E-08 63.1 3.1 19 353-371 3-21 (204)
243 2qz4_A Paraplegin; AAA+, SPG7, 96.4 0.02 6.9E-07 56.4 11.7 21 352-372 40-60 (262)
244 1cke_A CK, MSSA, protein (cyti 96.4 0.0015 5.3E-08 63.4 3.2 20 352-371 6-25 (227)
245 2orv_A Thymidine kinase; TP4A 96.4 0.013 4.6E-07 57.8 9.8 114 342-474 11-126 (234)
246 2zts_A Putative uncharacterize 96.4 0.015 5.2E-07 56.7 10.3 46 429-474 133-182 (251)
247 3cmu_A Protein RECA, recombina 96.3 0.021 7.2E-07 72.0 13.7 119 347-472 1424-1562(2050)
248 2pez_A Bifunctional 3'-phospho 96.3 0.0021 7.3E-08 60.2 3.6 22 349-371 4-25 (179)
249 3cr8_A Sulfate adenylyltranfer 96.3 0.0012 4E-08 73.8 2.0 25 346-371 365-389 (552)
250 4ad8_A DNA repair protein RECN 96.2 0.00086 2.9E-08 74.3 0.4 31 342-374 53-83 (517)
251 3d8b_A Fidgetin-like protein 1 96.2 0.021 7.3E-07 59.8 10.9 20 352-371 118-137 (357)
252 1q57_A DNA primase/helicase; d 96.2 0.021 7.2E-07 62.8 11.2 28 347-375 239-266 (503)
253 2qor_A Guanylate kinase; phosp 96.1 0.0022 7.7E-08 61.6 2.9 24 347-371 9-32 (204)
254 2f9l_A RAB11B, member RAS onco 96.1 0.0025 8.6E-08 60.6 3.2 20 352-371 6-25 (199)
255 3bgw_A DNAB-like replicative h 96.1 0.018 6.1E-07 62.5 10.3 99 346-448 193-295 (444)
256 3cmu_A Protein RECA, recombina 96.1 0.038 1.3E-06 69.7 14.2 122 347-474 380-520 (2050)
257 2chg_A Replication factor C sm 96.1 0.032 1.1E-06 52.7 10.8 19 353-371 40-58 (226)
258 3syl_A Protein CBBX; photosynt 96.0 0.013 4.3E-07 59.7 8.0 21 352-372 68-88 (309)
259 4eaq_A DTMP kinase, thymidylat 96.0 0.0035 1.2E-07 61.9 3.7 24 347-371 23-46 (229)
260 3pxi_A Negative regulator of g 96.0 0.027 9.2E-07 65.2 11.6 21 352-372 202-222 (758)
261 4b4t_L 26S protease subunit RP 96.0 0.041 1.4E-06 59.5 12.1 99 352-475 216-331 (437)
262 4b4t_K 26S protease regulatory 96.0 0.032 1.1E-06 60.1 11.3 99 352-475 207-322 (428)
263 3n70_A Transport activator; si 95.9 0.014 4.7E-07 52.9 7.0 20 352-371 25-44 (145)
264 3co5_A Putative two-component 95.9 0.02 7E-07 51.6 8.1 88 352-473 28-115 (143)
265 3t61_A Gluconokinase; PSI-biol 95.9 0.0033 1.1E-07 60.1 2.6 20 352-371 19-38 (202)
266 3ice_A Transcription terminati 95.9 0.0033 1.1E-07 66.7 2.9 46 325-371 132-194 (422)
267 1xwi_A SKD1 protein; VPS4B, AA 95.7 0.05 1.7E-06 56.2 11.0 21 352-372 46-66 (322)
268 3cm0_A Adenylate kinase; ATP-b 95.7 0.0053 1.8E-07 57.5 3.2 22 349-371 3-24 (186)
269 1m7g_A Adenylylsulfate kinase; 95.6 0.0059 2E-07 58.9 3.5 26 345-371 20-45 (211)
270 2www_A Methylmalonic aciduria 95.6 0.0043 1.5E-07 65.2 2.7 20 352-371 75-94 (349)
271 2yvu_A Probable adenylyl-sulfa 95.6 0.0068 2.3E-07 57.1 3.8 23 348-371 11-33 (186)
272 3pfi_A Holliday junction ATP-d 95.6 0.027 9.4E-07 58.0 8.4 20 352-371 56-75 (338)
273 1ypw_A Transitional endoplasmi 95.6 0.0068 2.3E-07 70.8 4.2 27 344-371 505-531 (806)
274 1w5s_A Origin recognition comp 95.5 0.019 6.6E-07 60.5 7.1 87 352-442 51-149 (412)
275 3hu3_A Transitional endoplasmi 95.5 0.016 5.6E-07 63.6 6.6 20 352-371 239-258 (489)
276 3kb2_A SPBC2 prophage-derived 95.5 0.007 2.4E-07 55.6 3.1 20 352-371 2-21 (173)
277 4b4t_J 26S protease regulatory 95.5 0.05 1.7E-06 58.1 10.1 99 352-475 183-298 (405)
278 4b4t_M 26S protease regulatory 95.4 0.039 1.3E-06 59.6 9.2 20 352-371 216-235 (434)
279 2qag_A Septin-2, protein NEDD5 95.4 0.0032 1.1E-07 66.5 0.6 40 325-371 16-57 (361)
280 4b4t_H 26S protease regulatory 95.3 0.051 1.7E-06 59.0 9.5 99 352-475 244-359 (467)
281 1q3t_A Cytidylate kinase; nucl 95.3 0.0094 3.2E-07 58.6 3.5 23 348-371 14-36 (236)
282 3lw7_A Adenylate kinase relate 95.2 0.0091 3.1E-07 54.6 3.2 20 352-371 2-21 (179)
283 1np6_A Molybdopterin-guanine d 95.2 0.0092 3.1E-07 56.4 3.2 20 352-371 7-26 (174)
284 1vht_A Dephospho-COA kinase; s 95.2 0.011 3.7E-07 57.1 3.6 20 352-371 5-24 (218)
285 2wji_A Ferrous iron transport 95.2 0.01 3.5E-07 54.5 3.2 20 352-371 4-23 (165)
286 1ex7_A Guanylate kinase; subst 95.2 0.0083 2.8E-07 57.4 2.6 20 352-371 2-21 (186)
287 2qp9_X Vacuolar protein sortin 95.1 0.061 2.1E-06 56.4 9.5 20 352-371 85-104 (355)
288 4b4t_I 26S protease regulatory 95.1 0.067 2.3E-06 57.5 9.6 99 352-476 217-333 (437)
289 2ze6_A Isopentenyl transferase 95.0 0.011 3.8E-07 59.0 3.4 20 352-371 2-21 (253)
290 2rhm_A Putative kinase; P-loop 95.0 0.013 4.4E-07 55.1 3.6 22 349-371 4-25 (193)
291 1sxj_A Activator 1 95 kDa subu 95.0 0.028 9.6E-07 62.1 6.9 21 352-372 78-98 (516)
292 1hqc_A RUVB; extended AAA-ATPa 95.0 0.046 1.6E-06 55.8 8.0 21 352-372 39-59 (324)
293 1jr3_A DNA polymerase III subu 95.0 0.066 2.3E-06 55.6 9.4 20 352-371 39-58 (373)
294 2gj8_A MNME, tRNA modification 95.0 0.013 4.3E-07 54.4 3.4 20 352-371 5-24 (172)
295 1d2n_A N-ethylmaleimide-sensit 95.0 0.051 1.7E-06 54.3 8.1 21 352-372 65-85 (272)
296 1qhx_A CPT, protein (chloramph 95.0 0.013 4.3E-07 54.4 3.3 20 352-371 4-23 (178)
297 3u61_B DNA polymerase accessor 94.9 0.083 2.9E-06 54.0 9.8 44 430-475 104-147 (324)
298 3eie_A Vacuolar protein sortin 94.9 0.078 2.7E-06 54.6 9.5 20 352-371 52-71 (322)
299 1ega_A Protein (GTP-binding pr 94.9 0.011 3.8E-07 60.6 3.0 64 415-483 101-169 (301)
300 1ly1_A Polynucleotide kinase; 94.9 0.014 4.7E-07 54.0 3.4 20 352-371 3-22 (181)
301 1xx6_A Thymidine kinase; NESG, 94.9 0.03 1E-06 53.6 5.8 120 349-485 7-140 (191)
302 3vfd_A Spastin; ATPase, microt 94.8 0.12 4E-06 54.7 10.7 20 352-371 149-168 (389)
303 2wjg_A FEOB, ferrous iron tran 94.8 0.014 4.9E-07 54.2 3.2 20 352-371 8-27 (188)
304 1kht_A Adenylate kinase; phosp 94.8 0.015 5E-07 54.4 3.3 20 352-371 4-23 (192)
305 1ojl_A Transcriptional regulat 94.8 0.039 1.3E-06 56.6 6.7 21 352-372 26-46 (304)
306 2qby_B CDC6 homolog 3, cell di 94.8 0.019 6.6E-07 60.0 4.4 20 352-371 46-65 (384)
307 2bjv_A PSP operon transcriptio 94.8 0.034 1.2E-06 55.3 6.1 21 352-372 30-50 (265)
308 3pvs_A Replication-associated 94.8 0.088 3E-06 57.1 9.7 20 352-371 51-70 (447)
309 1via_A Shikimate kinase; struc 94.7 0.012 4.2E-07 54.6 2.6 19 353-371 6-24 (175)
310 2p5t_B PEZT; postsegregational 94.7 0.012 4E-07 58.7 2.5 25 346-371 28-52 (253)
311 3iij_A Coilin-interacting nucl 94.6 0.016 5.4E-07 54.1 3.1 22 349-371 10-31 (180)
312 1gvn_B Zeta; postsegregational 94.6 0.017 5.7E-07 59.0 3.3 22 349-371 32-53 (287)
313 2jaq_A Deoxyguanosine kinase; 94.5 0.018 6E-07 54.5 3.2 19 353-371 2-20 (205)
314 2a5y_B CED-4; apoptosis; HET: 94.5 0.18 6.2E-06 55.9 11.8 117 351-479 152-280 (549)
315 2j9r_A Thymidine kinase; TK1, 94.5 0.076 2.6E-06 51.8 7.5 122 348-486 26-161 (214)
316 2zan_A Vacuolar protein sortin 94.5 0.069 2.4E-06 57.8 8.1 21 352-372 168-188 (444)
317 1uf9_A TT1252 protein; P-loop, 94.5 0.021 7.1E-07 54.0 3.5 20 352-371 9-28 (203)
318 2zej_A Dardarin, leucine-rich 94.4 0.02 6.9E-07 53.4 3.2 19 353-371 4-22 (184)
319 1iqp_A RFCS; clamp loader, ext 94.3 0.037 1.2E-06 56.3 5.2 19 353-371 48-66 (327)
320 2v54_A DTMP kinase, thymidylat 94.3 0.024 8.1E-07 53.8 3.5 22 349-371 3-24 (204)
321 1gtv_A TMK, thymidylate kinase 94.2 0.011 3.7E-07 56.6 0.9 19 353-371 2-20 (214)
322 3r20_A Cytidylate kinase; stru 94.2 0.023 7.8E-07 56.3 3.2 20 352-371 10-29 (233)
323 1tev_A UMP-CMP kinase; ploop, 94.2 0.026 9E-07 52.7 3.5 20 352-371 4-23 (196)
324 2c95_A Adenylate kinase 1; tra 94.2 0.025 8.6E-07 53.1 3.3 23 348-371 7-29 (196)
325 3ake_A Cytidylate kinase; CMP 94.1 0.025 8.4E-07 53.7 3.2 19 353-371 4-22 (208)
326 1g5t_A COB(I)alamin adenosyltr 94.1 0.26 9E-06 47.3 10.4 63 422-488 109-179 (196)
327 2plr_A DTMP kinase, probable t 94.1 0.029 9.9E-07 53.3 3.6 22 349-371 3-24 (213)
328 2z0h_A DTMP kinase, thymidylat 94.1 0.026 9E-07 53.0 3.2 19 353-371 2-20 (197)
329 2iut_A DNA translocase FTSK; n 94.0 0.024 8.3E-07 63.1 3.3 29 342-371 206-234 (574)
330 2ohf_A Protein OLA1, GTP-bindi 94.0 0.055 1.9E-06 57.7 6.0 24 347-371 19-42 (396)
331 2ga8_A Hypothetical 39.9 kDa p 94.0 0.017 5.9E-07 60.6 2.0 29 342-371 14-44 (359)
332 1nks_A Adenylate kinase; therm 94.0 0.028 9.5E-07 52.5 3.2 20 352-371 2-21 (194)
333 3t34_A Dynamin-related protein 93.9 0.024 8.2E-07 59.5 2.9 26 342-371 29-54 (360)
334 1xjc_A MOBB protein homolog; s 93.9 0.029 1E-06 52.7 3.2 20 352-371 5-24 (169)
335 2v3c_C SRP54, signal recogniti 93.9 0.085 2.9E-06 57.0 7.2 21 352-372 100-120 (432)
336 2vli_A Antibiotic resistance p 93.8 0.024 8.3E-07 52.7 2.4 20 352-371 6-25 (183)
337 1nn5_A Similar to deoxythymidy 93.8 0.033 1.1E-06 53.2 3.4 23 348-371 7-29 (215)
338 2wwf_A Thymidilate kinase, put 93.8 0.033 1.1E-06 53.0 3.4 22 349-371 9-30 (212)
339 3cf2_A TER ATPase, transitiona 93.8 0.073 2.5E-06 61.8 6.8 99 352-475 239-351 (806)
340 1qvr_A CLPB protein; coiled co 93.7 0.098 3.4E-06 61.3 7.8 22 352-373 589-610 (854)
341 3trf_A Shikimate kinase, SK; a 93.7 0.035 1.2E-06 51.8 3.2 20 352-371 6-25 (185)
342 2bwj_A Adenylate kinase 5; pho 93.5 0.03 1E-06 52.8 2.4 24 347-371 9-32 (199)
343 1qf9_A UMP/CMP kinase, protein 93.4 0.04 1.4E-06 51.4 3.2 20 352-371 7-26 (194)
344 1w4r_A Thymidine kinase; type 93.4 0.066 2.3E-06 51.4 4.7 107 349-476 19-129 (195)
345 2pbr_A DTMP kinase, thymidylat 93.4 0.041 1.4E-06 51.4 3.2 19 353-371 2-20 (195)
346 3fb4_A Adenylate kinase; psych 93.4 0.041 1.4E-06 52.8 3.2 19 353-371 2-20 (216)
347 1f6b_A SAR1; gtpases, N-termin 93.3 0.032 1.1E-06 52.9 2.4 28 342-371 18-45 (198)
348 3a4m_A L-seryl-tRNA(SEC) kinas 93.3 0.046 1.6E-06 54.6 3.6 20 352-371 5-24 (260)
349 1e6c_A Shikimate kinase; phosp 93.2 0.037 1.3E-06 50.9 2.6 20 352-371 3-22 (173)
350 3e2i_A Thymidine kinase; Zn-bi 93.2 0.29 1E-05 47.7 8.9 110 348-474 26-138 (219)
351 2pt5_A Shikimate kinase, SK; a 93.1 0.047 1.6E-06 50.0 3.2 19 353-371 2-20 (168)
352 1sxj_B Activator 1 37 kDa subu 93.1 0.39 1.3E-05 48.4 10.3 18 354-371 45-62 (323)
353 1m2o_B GTP-binding protein SAR 93.1 0.049 1.7E-06 51.2 3.2 28 342-371 16-43 (190)
354 3dl0_A Adenylate kinase; phosp 93.0 0.048 1.6E-06 52.3 3.2 19 353-371 2-20 (216)
355 2qtf_A Protein HFLX, GTP-bindi 93.0 0.045 1.5E-06 57.7 3.2 22 350-371 178-199 (364)
356 1ukz_A Uridylate kinase; trans 92.9 0.055 1.9E-06 51.3 3.4 20 352-371 16-35 (203)
357 1w36_D RECD, exodeoxyribonucle 92.9 0.11 3.8E-06 58.5 6.4 20 352-371 165-184 (608)
358 1zd8_A GTP:AMP phosphotransfer 92.8 0.053 1.8E-06 52.6 3.2 20 352-371 8-27 (227)
359 3te6_A Regulatory protein SIR3 92.8 0.32 1.1E-05 50.3 9.1 117 349-476 44-175 (318)
360 3k53_A Ferrous iron transport 92.8 0.051 1.7E-06 54.4 3.1 20 352-371 4-23 (271)
361 4ag6_A VIRB4 ATPase, type IV s 92.7 0.059 2E-06 57.1 3.6 20 352-371 36-55 (392)
362 1mky_A Probable GTP-binding pr 92.6 0.056 1.9E-06 58.4 3.3 20 352-371 181-200 (439)
363 2grj_A Dephospho-COA kinase; T 92.6 0.061 2.1E-06 51.4 3.2 20 352-371 13-32 (192)
364 2qen_A Walker-type ATPase; unk 92.6 0.23 7.9E-06 50.6 7.8 22 349-371 30-51 (350)
365 2xb4_A Adenylate kinase; ATP-b 92.6 0.059 2E-06 52.3 3.2 19 353-371 2-20 (223)
366 2dby_A GTP-binding protein; GD 92.5 0.076 2.6E-06 56.1 4.1 19 353-371 3-21 (368)
367 1aky_A Adenylate kinase; ATP:A 92.5 0.067 2.3E-06 51.6 3.4 20 352-371 5-24 (220)
368 2cdn_A Adenylate kinase; phosp 92.5 0.071 2.4E-06 50.6 3.5 20 352-371 21-40 (201)
369 1a7j_A Phosphoribulokinase; tr 92.4 0.037 1.2E-06 56.5 1.4 20 352-371 6-25 (290)
370 2ged_A SR-beta, signal recogni 92.4 0.068 2.3E-06 49.8 3.2 20 352-371 49-68 (193)
371 1zak_A Adenylate kinase; ATP:A 92.4 0.059 2E-06 52.1 2.8 20 352-371 6-25 (222)
372 1uj2_A Uridine-cytidine kinase 92.3 0.067 2.3E-06 53.0 3.2 20 352-371 23-42 (252)
373 1zuh_A Shikimate kinase; alpha 92.3 0.072 2.5E-06 48.9 3.2 20 352-371 8-27 (168)
374 2iyv_A Shikimate kinase, SK; t 92.3 0.055 1.9E-06 50.5 2.4 20 352-371 3-22 (184)
375 1fzq_A ADP-ribosylation factor 92.3 0.069 2.4E-06 49.6 3.1 20 352-371 17-36 (181)
376 1z2a_A RAS-related protein RAB 92.3 0.084 2.9E-06 47.5 3.6 19 353-371 7-25 (168)
377 1moz_A ARL1, ADP-ribosylation 92.2 0.056 1.9E-06 49.7 2.4 20 352-371 19-38 (183)
378 2f6r_A COA synthase, bifunctio 92.1 0.068 2.3E-06 54.1 3.0 22 351-372 75-96 (281)
379 1ltq_A Polynucleotide kinase; 92.1 0.077 2.6E-06 53.7 3.4 20 352-371 3-22 (301)
380 1z6t_A APAF-1, apoptotic prote 92.0 0.5 1.7E-05 52.4 10.2 21 351-371 147-167 (591)
381 2dyk_A GTP-binding protein; GT 91.9 0.093 3.2E-06 46.9 3.4 19 353-371 3-21 (161)
382 3tw8_B RAS-related protein RAB 91.8 0.1 3.5E-06 47.6 3.6 20 352-371 10-29 (181)
383 1z08_A RAS-related protein RAB 91.8 0.1 3.5E-06 47.1 3.6 19 353-371 8-26 (170)
384 1e4v_A Adenylate kinase; trans 91.8 0.083 2.8E-06 50.7 3.1 19 353-371 2-20 (214)
385 2ce2_X GTPase HRAS; signaling 91.8 0.082 2.8E-06 47.2 2.8 19 353-371 5-23 (166)
386 2erx_A GTP-binding protein DI- 91.8 0.12 4E-06 46.7 3.9 19 353-371 5-23 (172)
387 2orw_A Thymidine kinase; TMTK, 91.7 0.093 3.2E-06 49.6 3.3 21 350-371 3-23 (184)
388 3tlx_A Adenylate kinase 2; str 91.6 0.1 3.5E-06 51.4 3.7 22 349-371 28-49 (243)
389 1kao_A RAP2A; GTP-binding prot 91.6 0.089 3E-06 47.1 2.9 19 353-371 5-23 (167)
390 4edh_A DTMP kinase, thymidylat 91.6 0.11 3.7E-06 50.5 3.6 22 349-371 5-26 (213)
391 1ek0_A Protein (GTP-binding pr 91.6 0.092 3.1E-06 47.3 3.0 19 353-371 5-23 (170)
392 1u8z_A RAS-related protein RAL 91.6 0.092 3.2E-06 47.1 3.0 20 352-371 5-24 (168)
393 2lkc_A Translation initiation 91.6 0.11 3.8E-06 47.3 3.6 20 352-371 9-28 (178)
394 1z0j_A RAB-22, RAS-related pro 91.6 0.092 3.1E-06 47.4 2.9 19 353-371 8-26 (170)
395 1a5t_A Delta prime, HOLB; zinc 91.5 0.52 1.8E-05 48.6 9.0 20 352-371 25-44 (334)
396 3q72_A GTP-binding protein RAD 91.5 0.092 3.1E-06 47.3 2.8 19 353-371 4-22 (166)
397 1ky3_A GTP-binding protein YPT 91.4 0.095 3.2E-06 47.9 2.9 20 352-371 9-28 (182)
398 1wms_A RAB-9, RAB9, RAS-relate 91.4 0.098 3.3E-06 47.7 2.9 19 353-371 9-27 (177)
399 1c1y_A RAS-related protein RAP 91.4 0.1 3.4E-06 47.0 3.0 19 353-371 5-23 (167)
400 3q85_A GTP-binding protein REM 91.3 0.1 3.4E-06 47.2 3.0 19 353-371 4-22 (169)
401 1g16_A RAS-related protein SEC 91.3 0.097 3.3E-06 47.2 2.8 19 353-371 5-23 (170)
402 2xxa_A Signal recognition part 91.3 1.7 6E-05 46.6 13.2 22 351-372 100-121 (433)
403 2gno_A DNA polymerase III, gam 91.3 0.49 1.7E-05 48.4 8.4 20 352-371 19-38 (305)
404 2nzj_A GTP-binding protein REM 91.2 0.1 3.5E-06 47.3 2.9 19 353-371 6-24 (175)
405 1svi_A GTP-binding protein YSX 91.2 0.1 3.6E-06 48.5 3.0 20 352-371 24-43 (195)
406 3v9p_A DTMP kinase, thymidylat 91.2 0.091 3.1E-06 51.7 2.6 23 348-371 23-45 (227)
407 1upt_A ARL1, ADP-ribosylation 91.1 0.11 3.7E-06 47.0 3.0 20 352-371 8-27 (171)
408 2yc2_C IFT27, small RAB-relate 91.1 0.094 3.2E-06 49.2 2.6 20 352-371 21-40 (208)
409 3pqc_A Probable GTP-binding pr 91.0 0.11 3.7E-06 48.1 3.0 20 352-371 24-43 (195)
410 3d3q_A TRNA delta(2)-isopenten 91.0 0.12 4E-06 54.0 3.4 20 352-371 8-27 (340)
411 3b1v_A Ferrous iron uptake tra 90.9 0.12 4E-06 52.2 3.3 20 352-371 4-23 (272)
412 3umf_A Adenylate kinase; rossm 90.9 0.14 5E-06 49.9 3.8 25 346-371 25-49 (217)
413 2cxx_A Probable GTP-binding pr 90.9 0.11 3.7E-06 48.0 2.7 19 353-371 3-21 (190)
414 4dcu_A GTP-binding protein ENG 90.8 0.16 5.6E-06 54.9 4.5 20 352-371 24-43 (456)
415 3lv8_A DTMP kinase, thymidylat 90.8 0.13 4.3E-06 50.9 3.3 22 349-371 26-47 (236)
416 4dsu_A GTPase KRAS, isoform 2B 90.8 0.12 4.1E-06 47.6 2.9 19 353-371 6-24 (189)
417 2fn4_A P23, RAS-related protei 90.8 0.12 4E-06 47.2 2.8 20 352-371 10-29 (181)
418 1r2q_A RAS-related protein RAB 90.8 0.12 4.2E-06 46.4 3.0 19 353-371 8-26 (170)
419 3zvl_A Bifunctional polynucleo 90.7 0.15 5E-06 54.7 3.9 20 352-371 259-278 (416)
420 2y8e_A RAB-protein 6, GH09086P 90.7 0.12 4.1E-06 47.0 2.8 19 353-371 16-34 (179)
421 3t1o_A Gliding protein MGLA; G 90.5 0.11 3.7E-06 48.2 2.4 20 352-371 15-34 (198)
422 4tmk_A Protein (thymidylate ki 90.5 0.14 4.7E-06 49.8 3.3 22 349-371 2-23 (213)
423 3clv_A RAB5 protein, putative; 90.5 0.15 5.3E-06 47.1 3.5 20 352-371 8-27 (208)
424 3p32_A Probable GTPase RV1496/ 90.5 0.64 2.2E-05 48.5 8.6 21 352-372 80-100 (355)
425 3bc1_A RAS-related protein RAB 90.5 0.13 4.5E-06 47.4 3.0 20 352-371 12-31 (195)
426 1r8s_A ADP-ribosylation factor 90.5 0.13 4.6E-06 46.1 3.0 19 353-371 2-20 (164)
427 1z0f_A RAB14, member RAS oncog 90.5 0.13 4.6E-06 46.7 3.0 20 352-371 16-35 (179)
428 2a9k_A RAS-related protein RAL 90.5 0.13 4.6E-06 47.1 3.0 20 352-371 19-38 (187)
429 2oil_A CATX-8, RAS-related pro 90.5 0.13 4.5E-06 47.8 3.0 20 352-371 26-45 (193)
430 3exa_A TRNA delta(2)-isopenten 90.4 0.15 5.2E-06 52.6 3.6 20 352-371 4-23 (322)
431 3ihw_A Centg3; RAS, centaurin, 90.4 0.13 4.5E-06 47.9 2.9 20 352-371 21-40 (184)
432 3be4_A Adenylate kinase; malar 90.4 0.14 4.8E-06 49.3 3.2 20 352-371 6-25 (217)
433 3crm_A TRNA delta(2)-isopenten 90.3 0.14 5E-06 52.9 3.3 20 352-371 6-25 (323)
434 2bme_A RAB4A, RAS-related prot 90.3 0.14 4.6E-06 47.2 2.8 20 352-371 11-30 (186)
435 1nrj_B SR-beta, signal recogni 90.3 0.15 5.1E-06 48.5 3.2 20 352-371 13-32 (218)
436 2hxs_A RAB-26, RAS-related pro 90.2 0.14 4.9E-06 46.6 2.9 19 353-371 8-26 (178)
437 2j37_W Signal recognition part 90.2 1.4 4.8E-05 48.3 11.3 21 352-372 102-122 (504)
438 3kkq_A RAS-related protein M-R 90.2 0.15 5E-06 46.9 3.0 20 352-371 19-38 (183)
439 1m7b_A RND3/RHOE small GTP-bin 90.1 0.14 4.9E-06 47.4 2.8 20 352-371 8-27 (184)
440 3con_A GTPase NRAS; structural 90.1 0.16 5.5E-06 47.0 3.2 20 352-371 22-41 (190)
441 2h92_A Cytidylate kinase; ross 90.1 0.13 4.4E-06 49.3 2.6 20 352-371 4-23 (219)
442 2wsm_A Hydrogenase expression/ 90.1 0.16 5.4E-06 48.6 3.2 20 352-371 31-50 (221)
443 2bov_A RAla, RAS-related prote 90.0 0.15 5.1E-06 47.8 3.0 20 352-371 15-34 (206)
444 1r6b_X CLPA protein; AAA+, N-t 90.0 0.9 3.1E-05 52.3 10.1 20 353-372 490-509 (758)
445 2efe_B Small GTP-binding prote 90.0 0.15 5.2E-06 46.6 2.9 19 353-371 14-32 (181)
446 2g6b_A RAS-related protein RAB 90.0 0.15 5.3E-06 46.5 3.0 20 352-371 11-30 (180)
447 3foz_A TRNA delta(2)-isopenten 90.0 0.16 5.6E-06 52.2 3.4 20 352-371 11-30 (316)
448 3cbq_A GTP-binding protein REM 90.0 0.15 5.1E-06 48.1 2.9 20 352-371 24-43 (195)
449 2ocp_A DGK, deoxyguanosine kin 90.0 0.17 5.9E-06 49.5 3.5 20 352-371 3-22 (241)
450 2qmh_A HPR kinase/phosphorylas 89.9 0.17 5.9E-06 48.7 3.3 22 349-371 33-54 (205)
451 1vg8_A RAS-related protein RAB 89.8 0.16 5.4E-06 47.7 2.9 20 352-371 9-28 (207)
452 2ew1_A RAS-related protein RAB 89.8 0.18 6.1E-06 47.9 3.3 20 352-371 27-46 (201)
453 3pxi_A Negative regulator of g 89.8 0.41 1.4E-05 55.2 7.0 21 353-373 523-543 (758)
454 3ld9_A DTMP kinase, thymidylat 89.8 0.2 6.8E-06 49.1 3.7 22 349-371 20-41 (223)
455 3tkl_A RAS-related protein RAB 89.7 0.16 5.6E-06 47.1 3.0 20 352-371 17-36 (196)
456 1mh1_A RAC1; GTP-binding, GTPa 89.7 0.17 5.7E-06 46.4 3.0 19 353-371 7-25 (186)
457 1ksh_A ARF-like protein 2; sma 89.7 0.17 5.7E-06 46.7 3.0 20 352-371 19-38 (186)
458 3t5g_A GTP-binding protein RHE 89.7 0.18 6E-06 46.3 3.1 20 352-371 7-26 (181)
459 2gf0_A GTP-binding protein DI- 89.5 0.17 5.7E-06 47.2 2.8 20 352-371 9-28 (199)
460 1r6b_X CLPA protein; AAA+, N-t 89.4 0.073 2.5E-06 61.5 0.2 21 352-372 208-228 (758)
461 2gf9_A RAS-related protein RAB 89.4 0.18 6.2E-06 46.7 3.0 20 352-371 23-42 (189)
462 1ak2_A Adenylate kinase isoenz 89.3 0.21 7.1E-06 48.6 3.5 20 352-371 17-36 (233)
463 2fg5_A RAB-22B, RAS-related pr 89.3 0.18 6E-06 47.1 2.8 20 352-371 24-43 (192)
464 2o52_A RAS-related protein RAB 89.2 0.18 6.2E-06 47.5 2.8 20 352-371 26-45 (200)
465 2il1_A RAB12; G-protein, GDP, 89.2 0.19 6.5E-06 47.0 3.0 19 353-371 28-46 (192)
466 3llu_A RAS-related GTP-binding 89.2 0.18 6.2E-06 47.2 2.8 20 352-371 21-40 (196)
467 3tmk_A Thymidylate kinase; pho 89.0 0.22 7.4E-06 48.6 3.3 22 349-371 4-25 (216)
468 2a5j_A RAS-related protein RAB 89.0 0.2 6.8E-06 46.6 3.0 20 352-371 22-41 (191)
469 3lxw_A GTPase IMAP family memb 89.0 0.19 6.6E-06 49.6 3.0 20 352-371 22-41 (247)
470 3bwd_D RAC-like GTP-binding pr 89.0 0.2 7E-06 45.7 3.0 20 352-371 9-28 (182)
471 3dz8_A RAS-related protein RAB 89.0 0.19 6.6E-06 46.7 2.8 19 353-371 25-43 (191)
472 2hf9_A Probable hydrogenase ni 88.9 0.21 7.1E-06 47.9 3.1 20 352-371 39-58 (226)
473 1zj6_A ADP-ribosylation factor 88.9 0.21 7.3E-06 46.2 3.1 20 352-371 17-36 (187)
474 1x3s_A RAS-related protein RAB 88.9 0.21 7.1E-06 46.2 3.0 20 352-371 16-35 (195)
475 1z06_A RAS-related protein RAB 88.8 0.21 7.1E-06 46.3 2.9 20 352-371 21-40 (189)
476 2h57_A ADP-ribosylation factor 88.8 0.2 6.7E-06 46.6 2.7 20 352-371 22-41 (190)
477 1zbd_A Rabphilin-3A; G protein 88.8 0.21 7.2E-06 46.8 3.0 20 352-371 9-28 (203)
478 3oes_A GTPase rhebl1; small GT 88.8 0.2 6.9E-06 47.1 2.8 20 352-371 25-44 (201)
479 1zd9_A ADP-ribosylation factor 88.8 0.21 7.3E-06 46.4 3.0 20 352-371 23-42 (188)
480 3t5d_A Septin-7; GTP-binding p 88.7 0.19 6.6E-06 50.3 2.8 19 353-371 10-28 (274)
481 3reg_A RHO-like small GTPase; 88.7 0.22 7.4E-06 46.5 3.0 20 352-371 24-43 (194)
482 2bcg_Y Protein YP2, GTP-bindin 88.7 0.2 7E-06 47.1 2.8 20 352-371 9-28 (206)
483 1wf3_A GTP-binding protein; GT 88.7 0.22 7.5E-06 50.9 3.2 20 352-371 8-27 (301)
484 3sr0_A Adenylate kinase; phosp 88.7 0.23 8E-06 47.9 3.2 19 353-371 2-20 (206)
485 2atv_A RERG, RAS-like estrogen 88.5 0.22 7.6E-06 46.5 2.9 20 352-371 29-48 (196)
486 3iby_A Ferrous iron transport 88.5 0.23 7.8E-06 49.5 3.1 19 353-371 3-21 (256)
487 2b6h_A ADP-ribosylation factor 88.5 0.22 7.4E-06 46.7 2.8 20 352-371 30-49 (192)
488 2cjw_A GTP-binding protein GEM 88.5 0.24 8.4E-06 46.4 3.2 20 352-371 7-26 (192)
489 4bas_A ADP-ribosylation factor 88.5 0.24 8.3E-06 46.0 3.2 20 352-371 18-37 (199)
490 2p5s_A RAS and EF-hand domain 88.5 0.23 7.8E-06 46.6 3.0 20 352-371 29-48 (199)
491 3a8t_A Adenylate isopentenyltr 88.5 0.28 9.5E-06 51.1 3.8 20 352-371 41-60 (339)
492 2h17_A ADP-ribosylation factor 88.4 0.2 6.7E-06 46.3 2.4 20 352-371 22-41 (181)
493 2xtp_A GTPase IMAP family memb 88.4 0.23 7.8E-06 49.0 3.0 20 352-371 23-42 (260)
494 3iev_A GTP-binding protein ERA 88.3 0.24 8.3E-06 50.6 3.3 20 352-371 11-30 (308)
495 2q3h_A RAS homolog gene family 88.2 0.24 8.2E-06 46.3 3.0 20 352-371 21-40 (201)
496 3cph_A RAS-related protein SEC 88.2 0.24 8.2E-06 46.7 3.0 20 352-371 21-40 (213)
497 1gwn_A RHO-related GTP-binding 88.2 0.23 7.9E-06 47.3 2.8 20 352-371 29-48 (205)
498 2xtz_A Guanine nucleotide-bind 88.1 0.27 9.3E-06 51.5 3.5 23 352-374 10-32 (354)
499 2r62_A Cell division protease 88.1 0.13 4.4E-06 51.0 1.0 20 353-372 46-65 (268)
500 3tqf_A HPR(Ser) kinase; transf 88.0 0.31 1.1E-05 45.9 3.4 22 349-371 15-36 (181)
No 1
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=100.00 E-value=2.8e-70 Score=635.61 Aligned_cols=482 Identities=21% Similarity=0.293 Sum_probs=414.3
Q ss_pred CchHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 006974 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVWK 80 (623)
Q Consensus 1 ~G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~~~~~~~~~l~~i~Di~~~l~r~~~g~~l~~~eL~~i~~~L~~~~~l~~ 80 (623)
||+|+|++|.+.|+.|.++|++||+.|+++..+......+|++++|+++++.|+..|. +++.||..++.+|..+..++.
T Consensus 302 ~G~RlL~~wl~~Pl~d~~~I~~R~~~v~~~~~~~~~l~~~L~~~~Dler~l~r~~~~~-~~~~dl~~l~~~l~~~~~l~~ 380 (800)
T 1wb9_A 302 MGSRMLKRWLHMPVRDTRVLLERQQTIGALQDFTAGLQPVLRQVGDLERILARLALRT-ARPRDLARMRHAFQQLPELRA 380 (800)
T ss_dssp HHHHHHHHHHHSCBCCHHHHHHHHHHHHHTGGGHHHHHHHHHTTCSHHHHHHHHHHTC-CCHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999998733355678999999999999999885 599999999999999999999
Q ss_pred HHHHhhhccCCcccccchHHHHHhcCCChhHHHHHHhhhhccC-------CCcccCCcCHHHHHHHHHHHHHHHHHHHHH
Q 006974 81 KLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCK-------LLIILDRASEDLELIRAERKRNMENLDSLL 153 (623)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~~I~~~Id~~-------~~~I~d~as~~L~~iR~~~~~~~~~l~~~l 153 (623)
++... ..+.|..+...+++++++.+.|.++|+++ ++.|+|+||++|+.+|+.+++.++.+.++.
T Consensus 381 ~l~~~---------~~~~L~~l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~I~~g~~~eLd~lr~~~~~~~~~l~~~~ 451 (800)
T 1wb9_A 381 QLETV---------DSAPVQALREKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLE 451 (800)
T ss_dssp HHHSC---------CCHHHHHHHHHHCCCHHHHHHHHHHBCSSCCSCSTTCCCBCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhc---------CcHHHHHHHHhcccHHHHHHHHHHHhCcCchhhhhcCCeeCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88642 13567777788888999999999999976 368999999999999999988888777766
Q ss_pred HHHHHHHHHhcCCCCccccccc-CceEEEEccccccCCCCcEEEEEecCCcEEEeccchhhhhhHHHHHHhHHHHHHHHH
Q 006974 154 KKVAAQIFQAGGIDKPLITKRR-SRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETA 232 (623)
Q Consensus 154 ~~~~~~~~~~~~~~~~~i~~~~-~r~~i~v~~~~~~~~~~g~~~~~s~sg~~~~~ep~~~~~l~~~~~~l~~~~~~ee~~ 232 (623)
.+.. ...++....+.+.+ .+|||+|+.+++..+|+||++.+|.+|+++|++|+ ++++++++.++..++..+|.+
T Consensus 452 ~~~~----~~~~~~~l~i~~~~~~gy~i~V~~~~~~~vp~~~i~~~s~~~~~~f~tp~-l~~l~~~i~~~~~~~~~~e~~ 526 (800)
T 1wb9_A 452 VRER----ERTGLDTLKVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPE-LKEYEDKVLTSKGKALALEKQ 526 (800)
T ss_dssp HHHH----HHHTCTTCEEEEETTTEEEEEEEHHHHTTSCTTCEEEEECSSEEEEECHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH----HHhCCCceEEEecCcceEEEEEeccccccCCcceEEeeeccCCCEEeCHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 5532 22344333333322 36999999999999999999999999999999998 899999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCcccceecCCCCCCCcceEEEcccccCccccchhhhccccc
Q 006974 233 ILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAAS 312 (623)
Q Consensus 233 il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~ 312 (623)
|+.+|++.+..+.+.|..+.+.+++||+++|+|.+|.+++||+|.|++++ .+.|++||||+++.. ..
T Consensus 527 i~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~~------~i~i~~~rHP~le~~-~~------ 593 (800)
T 1wb9_A 527 LYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKP------GIRITEGRHPVVEQV-LN------ 593 (800)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCEECSSS------CEEEEEECCTTHHHH-CS------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccEECCCC------CEEEEeccccEEEcc-CC------
Confidence 99999999999999999999999999999999999999999999998753 699999999999421 10
Q ss_pred CCCCCCCCCCCCCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCC
Q 006974 313 SNSNPLKSDVENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP 390 (623)
Q Consensus 313 ~~~~~~~~~~g~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~ 390 (623)
+.++ +++|. ++| ++++|+||||||||||||+++.+.++++.|+++|+.. .
T Consensus 594 -------------------------~~~vlndisl~-~~g-~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~-~ 645 (800)
T 1wb9_A 594 -------------------------EPFIANPLNLS-PQR-RMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQK-V 645 (800)
T ss_dssp -------------------------SCCCCEEEEEC-SSS-CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSE-E
T ss_pred -------------------------Cceeeeccccc-CCC-cEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhc-c
Confidence 1245 45555 567 8999999999999999999999999999999999875 6
Q ss_pred CccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEE
Q 006974 391 RLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVV 469 (623)
Q Consensus 391 ~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii 469 (623)
.++++++++.++|..+++..+.|+||++|+++..++..+++|+||||||||+|||+.++.+++.++++++.+ .++++|+
T Consensus 646 ~i~~~~~i~~~~~~~d~l~~~~stf~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~ 725 (800)
T 1wb9_A 646 EIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLF 725 (800)
T ss_dssp EECCCCEEEEEEC-----------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cceeHHHHHhhCCHHHHHHhhhhhhhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEE
Confidence 778888899999999999999999999999999999999999999999999999999999998889999987 4899999
Q ss_pred EcCchhHHhhccccceeeCceEEEecC--ccccccccccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHhh
Q 006974 470 TTHYADLSCLKDKDTRFENAATEFSLE--TLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERL 538 (623)
Q Consensus 470 ~TH~~~l~~~~~~~~~i~~g~~~~~~~--~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a~~~~~~~ 538 (623)
+|||+++..+|++...+.|++|.++.. .+.|+|++..|.++.|||+++|+++|+|++|+++|++.+..+
T Consensus 726 ~TH~~el~~l~d~~~~v~n~~~~~~~~~~~l~~~ykl~~G~~~~S~gi~vA~~~GlP~~vi~rA~~~l~~l 796 (800)
T 1wb9_A 726 ATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLREL 796 (800)
T ss_dssp ECSCGGGGGHHHHSTTEEEEEEEEEEETTEEEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHhhhhhceEEEEEEEEEcCCcEEEEEEEEECCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999988999999999999998754 599999999999999999999999999999999999988754
No 2
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=100.00 E-value=6.6e-64 Score=586.84 Aligned_cols=490 Identities=21% Similarity=0.267 Sum_probs=380.9
Q ss_pred CchHhHhccCCCCCCCHHHHHHHHHHHHHHHH----HHhcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 006974 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA----MMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVN 76 (623)
Q Consensus 1 ~G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~----~~~~~~~~l~~i~Di~~~l~r~~~g~~l~~~eL~~i~~~L~~~~ 76 (623)
||+|+||+|+..|+.+.++|+.||+.++++.. +.....-.|++++|++|++.|+..|++ +|.||..++.+|..+.
T Consensus 355 mG~RlLr~Wl~~PL~d~~~I~~R~daVe~l~~~~~~~~~~l~~~L~~i~DleRll~ri~~~~~-~~~dl~~l~~~l~~l~ 433 (918)
T 3thx_B 355 FGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIERGLCSIYHKKC-STQEFFLIVKTLYHLK 433 (918)
T ss_dssp HHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHSCCCTHHHHHHHTTTTCCCHHHHHHHHHTTCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhCCcHHHHHHHHHHccCccHHHHHHHhccCcC-CHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999998752 222344578999999999999999987 8999999999998776
Q ss_pred -HHHHHHHHhhhccCCcccccchHHHHHhcCCChhHHHHHHhhhhccC-------CCcccCC-cCHHHHHHHHHHHHHHH
Q 006974 77 -NVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCK-------LLIILDR-ASEDLELIRAERKRNME 147 (623)
Q Consensus 77 -~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~~I~~~Id~~-------~~~I~d~-as~~L~~iR~~~~~~~~ 147 (623)
.++..+..... ....+.|..++..++.+.+....+...|+++ ++.+.+. ..|+|+.+|+..+....
T Consensus 434 ~~l~~~l~~~~~-----~~~~~lL~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 508 (918)
T 3thx_B 434 SEFQAIIPAVNS-----HIQSDLLRTVILEIPELLSPVEHYLKILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQGVID 508 (918)
T ss_dssp HHHHHHHHHHHH-----TCCCHHHHHHHTHHHHHTGGGHHHHTTSCHHHHHHTCSTTSCSCGGGCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh-----hccCHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhcCCccccccccccCHHHHHHHHHHHHHHH
Confidence 55554432111 0011233333332221111122333334321 1223332 36899999988888888
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcccccccCceEEEEccccccCCCCcEEEEEecCCcEEEeccchhhhhhHHHHHHhHHHH
Q 006974 148 NLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEI 227 (623)
Q Consensus 148 ~l~~~l~~~~~~~~~~~~~~~~~i~~~~~r~~i~v~~~~~~~~~~g~~~~~s~sg~~~~~ep~~~~~l~~~~~~l~~~~~ 227 (623)
.+++.+.+.... .. .....+++.+++||+|+|+.++...+|+.|+..++..+..+|++|+ ++++++++..++.+..
T Consensus 509 ~~~~~l~~~~~~-i~--~~~~~~~~~~g~~y~iev~~~~~~~vp~~~~~~~~~~~~~rf~tpe-l~~~~~~~~~~~e~~~ 584 (918)
T 3thx_B 509 EIRMHLQEIRKI-LK--NPSAQYVTVSGQEFMIEIKNSAVSCIPTDWVKVGSTKAVSRFHSPF-IVENYRHLNQLREQLV 584 (918)
T ss_dssp HHHHHHHHHHHH-HT--CTTCCCEEETTEEEEEEEETTSGGGSCSSCEEEEECSSEEEEECHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hC--cccceeEeecCCEEEEEEcHHHHhhCCCeEEEEEecCCeeEEECHH-HHHHHHHHHHHHHHHH
Confidence 888777654322 11 1223567778889999999999999996665555555555788885 8899998887777766
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCcccceecCCCCCCCcceEEEcccccCccccchhhh
Q 006974 228 AEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRS 307 (623)
Q Consensus 228 ~ee~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~ 307 (623)
..|.+++.++...+..+...|..+++.+++|||++|+|.+|..++||+|.|++++ .|.|+++|||+++.. +..
T Consensus 585 ~~e~~~~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~~------~i~i~~~rHP~le~~-~~~ 657 (918)
T 3thx_B 585 LDCSAEWLDFLEKFSEHYHSLCKAVHHLATVDCIFSLAKVAKQGDYCRPTVQEER------KIVIKNGRHPVIDVL-LGE 657 (918)
T ss_dssp HHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHTSSSCBCCEEESSC------EEEEEEECCHHHHHH-TCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCcccCCC------cEEEEeccchhhhhh-hcc
Confidence 7777888889999999999999999999999999999999999999999998753 799999999998421 110
Q ss_pred cccccCCCCCCCCCCCCCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeec
Q 006974 308 LSAASSNSNPLKSDVENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLP 385 (623)
Q Consensus 308 ~~~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp 385 (623)
++.+| +++|++++| ++++|+||||||||||||++|++.+|++.|+++|
T Consensus 658 -----------------------------~~~~V~ndvsl~~~~g-~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vp 707 (918)
T 3thx_B 658 -----------------------------QDQYVPNNTDLSEDSE-RVMIITGPNMGGKSSYIKQVALITIMAQIGSYVP 707 (918)
T ss_dssp -----------------------------CSSSCCEEEEECTTSC-CEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBS
T ss_pred -----------------------------CCceecccccccCCCC-eEEEEECCCCCchHHHHHHHHHHHHHhhcCcccc
Confidence 01245 666777788 9999999999999999999999999999999999
Q ss_pred CCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CC
Q 006974 386 AKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RV 464 (623)
Q Consensus 386 ~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~ 464 (623)
+.. ..++.++++++++|..+++..++|+||+||++++.++..+++|+||||||||+||||.++.++++++++++.+ .|
T Consensus 708 a~~-~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g 786 (918)
T 3thx_B 708 AEE-ATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVK 786 (918)
T ss_dssp SSE-EEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred chh-hhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 975 6788888999999999999999999999999988888889999999999999999999999999889999865 68
Q ss_pred cEEEEEcCchhHHhhccccce-eeCceEEEe----------------cCccccccccccCCCCCcHHHHHHHHCCCCHHH
Q 006974 465 GLAVVTTHYADLSCLKDKDTR-FENAATEFS----------------LETLRPTYRILWGSTGDSNALNIAKSIGFDRKI 527 (623)
Q Consensus 465 ~~vii~TH~~~l~~~~~~~~~-i~~g~~~~~----------------~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i 527 (623)
+++|++|||+++..++++... +.|++|.+. .+.+.|+|++.+|.++.|||+++|+++|+|++|
T Consensus 787 ~tvl~vTH~~el~~l~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~~~~~~l~flykl~~G~~~~S~gi~vA~~aGlp~~v 866 (918)
T 3thx_B 787 SLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEI 866 (918)
T ss_dssp CEEEEECSCGGGGGHHHHTTTTEEEEEEEEECC-----------------CCEEEEEEESCCCTTTTHHHHTTTTCCHHH
T ss_pred CeEEEEeCcHHHHHHHhhcccceEEEEEEEEEcccccccccccccCCCCceeEeeeeccCCCCCcHHHHHHHHhCcCHHH
Confidence 999999999999999998875 899999873 236999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 006974 528 IQRAQKLVERL 538 (623)
Q Consensus 528 ~~~a~~~~~~~ 538 (623)
+++|++.+..+
T Consensus 867 i~rA~~~~~~L 877 (918)
T 3thx_B 867 LKKAAHKSKEL 877 (918)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999976643
No 3
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=100.00 E-value=8e-64 Score=578.42 Aligned_cols=468 Identities=22% Similarity=0.291 Sum_probs=398.9
Q ss_pred CchHhHhccCCCCCCCHHHHHHHHHHHHHHHHH---HhcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 006974 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAM---MQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77 (623)
Q Consensus 1 ~G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~~---~~~~~~~l~~i~Di~~~l~r~~~g~~l~~~eL~~i~~~L~~~~~ 77 (623)
||+|+|++|.+.|+.|.++|+.|++.++++... ......+|++++|+++++.|+..|. +++.||..++.+|..+..
T Consensus 283 ~G~RlL~~wl~~Pl~d~~~I~~R~~~V~~l~~~~~~~~~l~~~L~~~~Dler~l~r~~~~~-~~~~dl~~l~~~l~~~~~ 361 (765)
T 1ewq_A 283 PGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVRRLLYRLADLERLATRLELGR-ASPKDLGALRRSLQILPE 361 (765)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999873 2355678999999999999999886 599999999999999988
Q ss_pred HHHHHHHhhhccCCcccccchHHHHHhcCCChhHHHHHHhhhhccC-------CCcccCCcCHHHHHHHHHHHHHHHHHH
Q 006974 78 VWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCK-------LLIILDRASEDLELIRAERKRNMENLD 150 (623)
Q Consensus 78 l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~~I~~~Id~~-------~~~I~d~as~~L~~iR~~~~~~~~~l~ 150 (623)
++.++. +...+.+++++.+.|.++|+++ ++.|+|++|++|+.+|+.+++..+.+.
T Consensus 362 l~~~l~------------------l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~i~~g~~~~Ld~lr~~~~~~~~~l~ 423 (765)
T 1ewq_A 362 LRALLG------------------EEVGLPDLSPLKEELEAALVEDPPLKVSEGGLIREGYDPDLDALRAAHREGVAYFL 423 (765)
T ss_dssp HHHHHC------------------TTSCCCCCHHHHHHHHHHBCSSCCSCTTSSCCBCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH------------------HHhccccHHHHHHHHHHHhcccchhhhccCCccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 877653 1234566788999999999865 357999999999999998887777776
Q ss_pred HHHHHHHHHHHHhcCCCCccccccc-CceEEEEccccccCCCCcEEEEEecCCcEEEeccchhhhhhHHHHHHhHHHHHH
Q 006974 151 SLLKKVAAQIFQAGGIDKPLITKRR-SRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAE 229 (623)
Q Consensus 151 ~~l~~~~~~~~~~~~~~~~~i~~~~-~r~~i~v~~~~~~~~~~g~~~~~s~sg~~~~~ep~~~~~l~~~~~~l~~~~~~e 229 (623)
++..+.. ...++....+.+.+ .+|+|+|+.+++..+|+.|++.+|.+|.++|++|+ +.++++++.++..++..+
T Consensus 424 ~~~~~~~----~~~~~~~l~i~~~~~~gy~i~v~~~~~~~vp~~~i~~~s~~~~~rf~tp~-l~el~~~i~~~~~~~~~~ 498 (765)
T 1ewq_A 424 ELEERER----ERTGIPTLKVGYNAVFGYYLEVTRPYYERVPKEYRPVQTLKDRQRYTLPE-MKEKEREVYRLEALIRRR 498 (765)
T ss_dssp HHHHHHH----HHHCCTTCEEEEETTTEEEEEEEGGGGGGSCTTCEEEEECSSEEEEECHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHcCCCceEEEeccceeEEEEeehHhhhcCCcceEEEEeccCCcEEECHH-HHHHHHHHHHHHHHHHHH
Confidence 6655432 33344443333333 36999999999999997799999999999999998 999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCcccceecCCCCCCCcceEEEcccccCccccchhhhcc
Q 006974 230 ETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLS 309 (623)
Q Consensus 230 e~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~ 309 (623)
|.+|+.+|++.+..+.+.+..+.+.+++||+++|+|.+|..++||+|.+ +. .|.++++|||+++. .
T Consensus 499 e~~i~~~L~~~i~~~~~~l~~~~~~la~LD~l~s~a~~a~~~~~~~P~~-~~-------~i~i~~~rHP~le~---~--- 564 (765)
T 1ewq_A 499 EEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVRYGYVRPRF-GD-------RLQIRAGRHPVVER---R--- 564 (765)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBCCEE-SS-------SEEEEEECCTTGGG---T---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCCceeecc-CC-------cEEEEEeECceEcc---C---
Confidence 9999999999999999999999999999999999999999999999999 32 59999999999842 0
Q ss_pred cccCCCCCCCCCCCCCcEEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCC
Q 006974 310 AASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389 (623)
Q Consensus 310 ~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~ 389 (623)
+.++++++++. | ++++|+||||||||||||+++.+.++++.|.++|+..
T Consensus 565 ----------------------------~~~vl~disl~-g-~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~- 613 (765)
T 1ewq_A 565 ----------------------------TEFVPNDLEMA-H-ELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEE- 613 (765)
T ss_dssp ----------------------------SCCCCEEEEES-S-CEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSE-
T ss_pred ----------------------------CceEeeeccCC-C-cEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhc-
Confidence 12565566666 8 8999999999999999999988888999999999864
Q ss_pred CCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEE
Q 006974 390 PRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVV 469 (623)
Q Consensus 390 ~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii 469 (623)
..++++++++.+++..+++..+.|+|+.++.+++.++..+++|+|+||||||+||++.++.++++++++++.+.|+++|+
T Consensus 614 ~~i~~v~~i~~~~~~~d~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~ 693 (765)
T 1ewq_A 614 AHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLF 693 (765)
T ss_dssp EEECCCSEEEEECCC------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred cceeeHHHhhccCCHHHHHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEE
Confidence 56788888888899999888888887777767777777799999999999999999999988887799988888899999
Q ss_pred EcCchhHHhhccccceeeCceEEEecC--ccccccccccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHhhc
Q 006974 470 TTHYADLSCLKDKDTRFENAATEFSLE--TLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLR 539 (623)
Q Consensus 470 ~TH~~~l~~~~~~~~~i~~g~~~~~~~--~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a~~~~~~~~ 539 (623)
+|||+++..++ ...+.|++|.++.. .+.++|++..|.++.|||+++|+++|+|++|+++|++.+..++
T Consensus 694 ~TH~~~l~~~~--~~~v~n~~~~~~~~~~~l~f~ykl~~G~~~~Sygi~vA~~aGlP~~VI~rA~~~l~~le 763 (765)
T 1ewq_A 694 ATHYFELTALG--LPRLKNLHVAAREEAGGLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARALLQAMA 763 (765)
T ss_dssp ECCCHHHHTCC--CTTEEEEEEEEECCSSSCEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred EeCCHHHHHhh--hhcceEEEEEEEEcCCeEEEEEEEEECCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 99999988887 67789999988754 5889999999999999999999999999999999999987654
No 4
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=100.00 E-value=1.1e-63 Score=586.43 Aligned_cols=494 Identities=18% Similarity=0.240 Sum_probs=397.6
Q ss_pred CchHhHhccCCCCCCCHHHHHHHHHHHHHHHH---HHhcCCC-CCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 006974 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA---MMQSQPL-DLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVN 76 (623)
Q Consensus 1 ~G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~---~~~~~~~-~l~~i~Di~~~l~r~~~g~~l~~~eL~~i~~~L~~~~ 76 (623)
||+|+||+|+..|+.|.++|++||+.++++.+ +.....- .|++++|++|++.|+..|++ +++||..++.+|..+.
T Consensus 337 ~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~~~~~~~~l~~~~L~~i~DleRl~~ri~~~~~-~~~dl~~l~~~l~~~~ 415 (934)
T 3thx_A 337 QGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAA-NLQDCYRLYQGINQLP 415 (934)
T ss_dssp HHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHSCHHHHHHHHTTTGGGCCCHHHHHHHHHTTCC-CHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHhCcCCCHHHHHHHHHHHHHHhhChHHHHHHHHHHhcCCCCHHHHHHHHhcCCC-CHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999998865 2222232 59999999999999999886 8999999999999999
Q ss_pred HHHHHHHHhhhccCCccc--ccchHHHHHhcCCChhHHHHHHhhhhccC----C-CcccCCcCHHHHHHHHHHHHHHHHH
Q 006974 77 NVWKKLTEAAELDGDSLQ--RYSPLLELLKNCNFLTELEEKIGFCIDCK----L-LIILDRASEDLELIRAERKRNMENL 149 (623)
Q Consensus 77 ~l~~~l~~~~~~~~~~~~--~~~~l~~l~~~~~~~~~L~~~I~~~Id~~----~-~~I~d~as~~L~~iR~~~~~~~~~l 149 (623)
.++..+............ ...++... +..++++.+.|.++||++ + +.|++++|++|+.+|+.+++..+.+
T Consensus 416 ~l~~~l~~~~~~~~~~l~~~~~~~l~~~---~~~l~~~~~~i~~~i~~~~~~~g~~~i~~g~~~~Ld~lr~~~~~~~~~l 492 (934)
T 3thx_A 416 NVIQALEKHEGKHQKLLLAVFVTPLTDL---RSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELREIMNDLEKKM 492 (934)
T ss_dssp HHHHHHHHTCCSSSTTGGGGTHHHHHHH---HHHHHHHHHHHHTTBCTTGGGTTCCCBCTTSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHH---HhhHHHHHHHHHHHhCcchhhcCCceeCCCCCHHHHHHHHHHHHHHHHH
Confidence 999888753210000000 01223222 335677888999999865 3 5799999999999999998888888
Q ss_pred HHHHHHHHHHHHHhcCC---CCcccccccC-ceEEEEccccccC--CCCcEEEEEecCCcEEEeccchhhhhhHHHHHHh
Q 006974 150 DSLLKKVAAQIFQAGGI---DKPLITKRRS-RMCVGIKASHKYL--LPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLS 223 (623)
Q Consensus 150 ~~~l~~~~~~~~~~~~~---~~~~i~~~~~-r~~i~v~~~~~~~--~~~g~~~~~s~sg~~~~~ep~~~~~l~~~~~~l~ 223 (623)
.+++.+...+ .++ ....+.+.+. +|++.|+...... .|..|+..++.++..+|++| ++.++++++..+.
T Consensus 493 ~~~~~~~~~~----~~~~~~~~lk~~~~~~~Gy~i~v~~~~~~~~~~~~~~~~~~t~~~~~rf~t~-el~~l~~~~~~~~ 567 (934)
T 3thx_A 493 QSTLISAARD----LGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNS-KLTSLNEEYTKNK 567 (934)
T ss_dssp HHHHHHHHHH----SCCCBTTTBEEEECC--CEEEEECHHHHTTTTTCSSCEEEEEC--CEEEECT-THHHHHHHHTTTT
T ss_pred HHHHHHHHHH----hCCCccceEEEEEeccceEEEEEEechhhccCCCCCcEEEEcccCeEEEECH-HHHHHHHHHHHHH
Confidence 7777664432 333 2333444333 7888887543222 23345555555555666655 6899999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--CCcccceecCCCCCCCcceEEEcccccCccc
Q 006974 224 NSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQW--MDGVCPILSSQSHVSFDSSINIEGIKHPLLL 301 (623)
Q Consensus 224 ~~~~~ee~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~--~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~ 301 (623)
.++.++|.+|+.+|++.+..+.+.|..+.+.+++||+++|+|.+|.. ++||||.+++.+ +..|.|+++|||+++
T Consensus 568 ~~~~~~e~~i~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~~rP~~~~~~----~~~i~i~~~rHP~le 643 (934)
T 3thx_A 568 TEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPAILEKG----QGRIILKASRHACVE 643 (934)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCBCCEEECTT----SCEEEEEEECCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCeeccCC----CcceEeecCccchhh
Confidence 88888999999999999999999999999999999999999999987 789999998732 136999999999995
Q ss_pred cchhhhcccccCCCCCCCCCCCCCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhh
Q 006974 302 GSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSK 379 (623)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~ 379 (623)
.. . ++.+| +++|.+.+| ++++|+||||||||||||++|++.+|+|
T Consensus 644 ~~--~------------------------------~~~~v~ndisl~~~~g-~i~~ItGpNGsGKSTlLr~ial~~~~aq 690 (934)
T 3thx_A 644 VQ--D------------------------------EIAFIPNDVYFEKDKQ-MFHIITGPNMGGKSTYIRQTGVIVLMAQ 690 (934)
T ss_dssp TC----------------------------------CCCCCEEEEEETTTB-CEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred hc--C------------------------------CceeecccceeecCCC-eEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 32 0 01245 566666778 9999999999999999999999999999
Q ss_pred hceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006974 380 AGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459 (623)
Q Consensus 380 ~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~ 459 (623)
+|+|+|+.. ..++.++++++++|..+++.+++|+||++|++++.++..+++|+||||||||+||||.++.+++++++++
T Consensus 691 ~G~~vpa~~-~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~ 769 (934)
T 3thx_A 691 IGCFVPCES-AEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEY 769 (934)
T ss_dssp HTCCBSEEE-EEEECCSEEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHH
T ss_pred cCCcccccc-ccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 999999986 6788889999999999999999999999999999998889999999999999999999999999999999
Q ss_pred Hhc-CCcEEEEEcCchhHHhhccccceeeCceEEE--ecCccccccccccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHH
Q 006974 460 LRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEF--SLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVE 536 (623)
Q Consensus 460 l~~-~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~--~~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a~~~~~ 536 (623)
+.+ .|+++|++|||+++..++++.+.+.||+|.+ +.+.+.++|++..|.++.|||+++|+++|+|+.|+++|++.+.
T Consensus 770 l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l~~~y~l~~G~~~~S~gi~vA~~~glp~~vi~~A~~~~~ 849 (934)
T 3thx_A 770 IATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKAL 849 (934)
T ss_dssp HHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEEEEEEEEEESCCCCCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcEEEEEEEeeCCCCCchHHHHHHHcCCCHHHHHHHHHHHH
Confidence 986 4899999999999999999999999999976 4668999999999999999999999999999999999999998
Q ss_pred hhcch
Q 006974 537 RLRPE 541 (623)
Q Consensus 537 ~~~~~ 541 (623)
.++..
T Consensus 850 ~le~~ 854 (934)
T 3thx_A 850 ELEEF 854 (934)
T ss_dssp HTTTT
T ss_pred HHHhc
Confidence 87654
No 5
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=100.00 E-value=1.6e-62 Score=583.23 Aligned_cols=491 Identities=20% Similarity=0.256 Sum_probs=371.8
Q ss_pred CchHhHhccCCCCCCCHHHHHHHHHHHHHHHHH---HhcCCCCCCCCcCHHHHHHHHhc-CCC-----------------
Q 006974 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAM---MQSQPLDLSTIEDIAGILNSAVS-GQL----------------- 59 (623)
Q Consensus 1 ~G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~~---~~~~~~~l~~i~Di~~~l~r~~~-g~~----------------- 59 (623)
||+|+||+|...|+.|.++|+.||+.|+++... .+...--|++++|++|++.|+.. |+.
T Consensus 431 mG~RLLr~WL~~PL~d~~~I~~RldaVe~l~~~~~~~~~l~~~L~~i~DlERll~Ri~~~~~~~~~~~~~~~~~i~~~~~ 510 (1022)
T 2o8b_B 431 FGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEET 510 (1022)
T ss_dssp HHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHCHHHHHHCGGGGCCCSCHH
T ss_pred hhHHHHHHHHhCccCCHHHHHHHHHHHHHHHhChHHHHHHHHHHhcCccHHHHHHHHHhcCCcccccccchhhhhhhhhh
Confidence 899999999999999999999999999988652 22334467899999999999976 442
Q ss_pred -CCHHHHHHHHHH---HHHHHHHHHHHHHhhhccCCcccccchHHHHHh--------cCCChhHHHHHHhhhhcc----C
Q 006974 60 -LSPSEICAVRRT---LRAVNNVWKKLTEAAELDGDSLQRYSPLLELLK--------NCNFLTELEEKIGFCIDC----K 123 (623)
Q Consensus 60 -l~~~eL~~i~~~---L~~~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~--------~~~~~~~L~~~I~~~Id~----~ 123 (623)
..+.++..+... +..+..+...+..... ...-+.|..+.. .++.+.++.+.|.++||+ +
T Consensus 511 ~~~~~~l~~l~~~l~~l~~~~~i~~~l~~~~~-----~~~s~lL~~~~~~~~~~~~~~~~~l~~~~~~~~~~id~~~~~~ 585 (1022)
T 2o8b_B 511 TYSKKKIIDFLSALEGFKVMCKIIGIMEEVAD-----GFKSKILKQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKARK 585 (1022)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TCCCHHHHHHTSBTTTSSSSCBCCCHHHHHHHHTTSCHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhc-----ccCcHHHHHHHHhhccccccchHHHHHHHHHHHHHhCchhhhc
Confidence 124444444444 5566666666653111 001123444442 345677777788899985 1
Q ss_pred CCcc--cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CcccccccCceEEEEccccccC-CCCcEEEEEe
Q 006974 124 LLII--LDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGID-KPLITKRRSRMCVGIKASHKYL-LPDGIALNVS 199 (623)
Q Consensus 124 ~~~I--~d~as~~L~~iR~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~i~~~~~r~~i~v~~~~~~~-~~~g~~~~~s 199 (623)
++.| ++++|++|+++|+.+++.++.+.+++.+.. ...++. ..+++.+++||+|+|+.++... +|+.|++.++
T Consensus 586 ~g~i~~~~g~~~~ld~~r~~~~~~~~~l~~~~~~~~----~~~~~~~l~~~~~~~~~y~i~v~~~~~~~~vp~~~~~~~t 661 (1022)
T 2o8b_B 586 TGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQR----NRIGCRTIVYWGIGRNRYQLEIPENFTTRNLPEEYELKST 661 (1022)
T ss_dssp SCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHTSSG----GGSSCSCCEEECCGGGCCEEEECTTTTSSCCCC-CEEEEE
T ss_pred CCcEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCCCceeEEEecCceEEEEEehhhhcccCCCceEEeee
Confidence 2344 788999999999998888888777765432 223433 3456677889999999999887 8988999999
Q ss_pred cCCcEEEeccchhhhhhHHHHHHhHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HCCcc
Q 006974 200 SSGATYFMEPKGAVEFNNMEVRLSNSE---IAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQ--WMDGV 274 (623)
Q Consensus 200 ~sg~~~~~ep~~~~~l~~~~~~l~~~~---~~ee~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~--~~~~~ 274 (623)
.+|.++|++|+ +++...++...+ ...+.+++.++...+..+.+.+..+.+.++.||+++|+|.+|. .++||
T Consensus 662 ~~~~~rf~t~e----l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~~ 737 (1022)
T 2o8b_B 662 KKGCKRYWTKT----IEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMC 737 (1022)
T ss_dssp TTEEEECCTTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTCSSSCEE
T ss_pred ccCccEEechH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCcc
Confidence 99999999885 455444443332 2334456666666777789999999999999999999999999 78999
Q ss_pred cceecCCCCCCCcceEEEcccccCccccchhhhcccccCCCCCCCCCCCCCcEEEceeeeec-CCccc--cccccccC--
Q 006974 275 CPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGI-SDFPV--PIDIKVEC-- 349 (623)
Q Consensus 275 ~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~l~~~y-~~~~v--~i~l~l~~-- 349 (623)
+|.|++.. +....|.+++||||+|... | ++.+| +++|.+.+
T Consensus 738 ~P~~~~~~--~~~~~l~i~~~rHP~l~~~--------------------------------~~~~~~v~ndi~l~~~~~~ 783 (1022)
T 2o8b_B 738 RPVILLPE--DTPPFLELKGSRHPCITKT--------------------------------FFGDDFIPNDILIGCEEEE 783 (1022)
T ss_dssp CCEECCTT--TSCCCEEEEEECCCC--------------------------------------CCCCCCEEEEESCCCSC
T ss_pred CCccccCC--CCCceEEEEeccccEEEEE--------------------------------ecCCceEeeeeeecccccc
Confidence 99998420 0123699999999998421 1 12345 55566655
Q ss_pred -----CceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHH
Q 006974 350 -----ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVD 424 (623)
Q Consensus 350 -----g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~ 424 (623)
| ++++||||||||||||||++|++.+|+++|+|||+.. ..++++++++.++|..+++..+.|+||++|++++.
T Consensus 784 ~~~~~g-~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~-~~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~ 861 (1022)
T 2o8b_B 784 QENGKA-YCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEV-CRLTPIDRVFTRLGASDRIMSGESTFFVELSETAS 861 (1022)
T ss_dssp C---CC-CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSE-EEECCCSBEEEECC---------CHHHHHHHHHHH
T ss_pred ccCCCC-cEEEEECCCCCChHHHHHHHHHHHHHhheeEEeccCc-CCCCHHHHHHHHcCCHHHHhhchhhhHHHHHHHHH
Confidence 6 8999999999999999999999999999999999986 67888999999999999999999999999999999
Q ss_pred HHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchhHHhh-ccccceeeCceEEE---------
Q 006974 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCL-KDKDTRFENAATEF--------- 493 (623)
Q Consensus 425 ~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~l~~~-~~~~~~i~~g~~~~--------- 493 (623)
|++++++|+||||||||+|||+.++.++++++++++.+. |+++|++|||+++... +++. .+.+|+|.+
T Consensus 862 al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~-~v~~g~~~~~~~~~~~~~ 940 (1022)
T 2o8b_B 862 ILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNV-AVRLGHMACMVENECEDP 940 (1022)
T ss_dssp HHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCS-SEEEEEEEEC--------
T ss_pred HHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcc-eeecCeEEEEEecCcccC
Confidence 999999999999999999999999999888899999876 8999999999997654 5554 456788874
Q ss_pred ecCccccccccccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHhhcch
Q 006974 494 SLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPE 541 (623)
Q Consensus 494 ~~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a~~~~~~~~~~ 541 (623)
+.+.+.++|++.+|.++.|||+++|+++|+|++|+++|++.+..++..
T Consensus 941 ~~~~l~~ly~l~~G~~~~Sygi~vA~l~Glp~~vi~rA~~~~~~le~~ 988 (1022)
T 2o8b_B 941 SQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKM 988 (1022)
T ss_dssp -----CEEEEEESSCCCCCHHHHHHHHTTCCHHHHHHHHHHHHHTTSS
T ss_pred CCCceEEEeeecCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 245788999999999999999999999999999999999998876543
No 6
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.96 E-value=1.7e-29 Score=252.52 Aligned_cols=167 Identities=17% Similarity=0.200 Sum_probs=138.9
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------------hh
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SK 379 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------------a~ 379 (623)
+++++||+++|++..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+
T Consensus 4 ~l~~~~l~~~y~~~~~l~~vsl~i~~G-e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 4 ILRAENIKKVIRGYEILKGISLSVKKG-EFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred EEEEEeEEEEECCEeeEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence 5789999999987665 999999999 99999999999999999999 776421 12
Q ss_pred hceeecCCCCC--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974 380 AGLYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (623)
Q Consensus 380 ~G~~vp~~~~~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll 435 (623)
...|+|+.... .+++ ++.++..+|+.+..++.+++|||||+ |+++|++++.+|+++
T Consensus 83 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ll 162 (224)
T 2pcj_A 83 KLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILL 162 (224)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEE
T ss_pred cEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 24588887421 1222 22456677888888999999999999 899999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 436 LLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
||||||+|||+.....+.. ++..+.++|.|+|++||+.++..+||+++.+.+|++..+
T Consensus 163 lLDEPt~~LD~~~~~~~~~-~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~ 220 (224)
T 2pcj_A 163 FADEPTGNLDSANTKRVMD-IFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGE 220 (224)
T ss_dssp EEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999 555566568899999999886689999999999988754
No 7
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.96 E-value=1.7e-29 Score=259.83 Aligned_cols=167 Identities=17% Similarity=0.154 Sum_probs=139.0
Q ss_pred cEEEceeeeecCCcc-c--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------hhh
Q 006974 326 EMTVGSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKA 380 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~-v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------a~~ 380 (623)
+++++||+++|++.. + ++||++.+| ++++|+||||||||||+|++ |++.+. .+.
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~isl~i~~G-e~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGINMNIKRG-EVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEETT-SEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred EEEEEEEEEEECCCCeEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 588999999997533 4 999999999 99999999999999999999 776421 122
Q ss_pred ceeecCCCC---CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974 381 GLYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (623)
Q Consensus 381 G~~vp~~~~---~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll 435 (623)
..|+||... ..+++ ++.++..+|+.+..++.+++|||||+ |+++|++++.+|++|
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lL 165 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVL 165 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 358888641 12232 23456778888889999999999999 899999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 436 LIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 436 LLDEp~~glD~~~~~~l~~all~~l~-~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
||||||+||||.....+.. ++..+. +.|.|+|++||+++ +..+||+++.+.+|++..+
T Consensus 166 lLDEPts~LD~~~~~~i~~-~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~ 225 (275)
T 3gfo_A 166 ILDEPTAGLDPMGVSEIMK-LLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQ 225 (275)
T ss_dssp EEECTTTTCCHHHHHHHHH-HHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEE
T ss_pred EEECccccCCHHHHHHHHH-HHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999 555565 55899999999988 5579999999999998765
No 8
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=3.4e-29 Score=255.16 Aligned_cols=168 Identities=21% Similarity=0.260 Sum_probs=139.1
Q ss_pred CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhhcee
Q 006974 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLY 383 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~G~~ 383 (623)
+.++++||+++|++..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+...|
T Consensus 14 ~~l~i~~l~~~y~~~~vl~~vsl~i~~G-ei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~ 92 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKKEILKGISFEIEEG-EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 92 (256)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred CeEEEEEEEEEECCEEEEEeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEE
Confidence 36889999999987665 999999999 99999999999999999999 776431 112357
Q ss_pred ecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeC
Q 006974 384 LPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (623)
Q Consensus 384 vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDE 439 (623)
+|+... ..+++ ++.++..+|+.+..++.+++|||||+ |+++|++++.+|+++||||
T Consensus 93 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE 172 (256)
T 1vpl_A 93 LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDE 172 (256)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 888642 11222 22346677888888999999999999 8999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 440 p~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 173 Pts~LD~~~~~~l~~-~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~ 227 (256)
T 1vpl_A 173 PTSGLDVLNAREVRK-ILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVET 227 (256)
T ss_dssp TTTTCCHHHHHHHHH-HHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEE
T ss_pred CccccCHHHHHHHHH-HHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEe
Confidence 999999999999999 55556666889999999988 4568999999999998754
No 9
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.96 E-value=3e-29 Score=256.95 Aligned_cols=167 Identities=14% Similarity=0.178 Sum_probs=139.5
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhhhcee
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLY 383 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~~G~~ 383 (623)
+++++||++.|++..+ ++||++.+| ++++|+||||||||||||++ |++.+ +++...|
T Consensus 11 ~l~~~~l~~~~~~~~vL~~vsl~i~~G-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~ 89 (266)
T 4g1u_C 11 LLEASHLHYHVQQQALINDVSLHIASG-EMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAV 89 (266)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEE
T ss_pred eEEEEeEEEEeCCeeEEEeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEE
Confidence 5889999999998776 999999999 99999999999999999999 77643 1233457
Q ss_pred ecCCCCC--CccH-------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcC------CCcEE
Q 006974 384 LPAKNHP--RLPW-------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS------RESLV 435 (623)
Q Consensus 384 vp~~~~~--~l~~-------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~------~~~Ll 435 (623)
+|+.... .+++ ++.++..+|+.+..++.+++|||||+ |+++|++++. +|++|
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lL 169 (266)
T 4g1u_C 90 MRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWL 169 (266)
T ss_dssp ECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEE
T ss_pred EecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEE
Confidence 7876421 1222 34567788888888999999999999 8999999998 99999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 436 LIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 436 LLDEp~~glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
||||||+||||.....+.. ++..+.++ +.|+|++|||++ +..+||+++.+.+|++..+
T Consensus 170 llDEPts~LD~~~~~~i~~-~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~ 229 (266)
T 4g1u_C 170 FLDEPTSALDLYHQQHTLR-LLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVAC 229 (266)
T ss_dssp EECCCCSSCCHHHHHHHHH-HHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred EEeCccccCCHHHHHHHHH-HHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999 55556544 569999999988 4579999999999998765
No 10
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.96 E-value=4.9e-29 Score=250.93 Aligned_cols=166 Identities=16% Similarity=0.222 Sum_probs=135.2
Q ss_pred EEEceeeeecCC----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------
Q 006974 327 MTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------- 377 (623)
Q Consensus 327 l~~~~l~~~y~~----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------- 377 (623)
++++||+++|++ ..+ ++||++.+| ++++|+||||||||||||++ |++.+.
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~G-e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEG-EFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 688999999973 233 999999999 99999999999999999999 776431
Q ss_pred -hhhceeecCCCC--CCccHHH------------------------HHHHHcCCchhh-hcccccccHHHH-HHHHHHHh
Q 006974 378 -SKAGLYLPAKNH--PRLPWFD------------------------LILADIGDHQSL-EQNLSTFSGHIS-RIVDILEL 428 (623)
Q Consensus 378 -a~~G~~vp~~~~--~~l~~~d------------------------~i~~~ig~~~~~-~~~~stfS~g~~-rl~~~~~l 428 (623)
.+...|+||... ..+++.+ .++..+|+.+.. ++.+++|||||+ |+++|+++
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral 160 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 112458888752 1223332 335566776654 889999999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
+.+|+++||||||+||||.....+.. ++..+.+ .|.|+|++||++++..+||+++.+.+|++...
T Consensus 161 ~~~p~llllDEPts~LD~~~~~~i~~-~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~ 226 (235)
T 3tif_A 161 ANNPPIILADQPTWALDSKTGEKIMQ-LLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVERE 226 (235)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEE
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999 4555654 48999999999998889999999999998754
No 11
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.96 E-value=7.3e-29 Score=253.62 Aligned_cols=167 Identities=20% Similarity=0.231 Sum_probs=138.4
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------hhhc
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAG 381 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------a~~G 381 (623)
+++++||+++|++..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+..
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~G-ei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i 102 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREG-EVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEV 102 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHE
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCC-CEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcE
Confidence 5899999999987665 999999999 99999999999999999999 776421 1123
Q ss_pred eeecCCCC--CCccH----------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974 382 LYLPAKNH--PRLPW----------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (623)
Q Consensus 382 ~~vp~~~~--~~l~~----------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL 436 (623)
.|+|+... ..+++ ++.++..+|+.+..++.+++|||||+ |+++|++++.+|+++|
T Consensus 103 ~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lll 182 (263)
T 2olj_A 103 GMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIML 182 (263)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 57888642 11122 22456677888888999999999999 8999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 437 LDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|||||+||||.....+.. ++..+.+.|.|+|++||+.+ +..+||+++.+.+|++...
T Consensus 183 LDEPts~LD~~~~~~~~~-~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 240 (263)
T 2olj_A 183 FDEPTSALDPEMVGEVLS-VMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEE 240 (263)
T ss_dssp EESTTTTSCHHHHHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred EeCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999 55556666889999999988 5579999999999998754
No 12
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.96 E-value=8.9e-29 Score=253.01 Aligned_cols=167 Identities=19% Similarity=0.165 Sum_probs=138.3
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------------
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------- 377 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------------- 377 (623)
+++++||+++|++..+ ++||++.+| ++++|+||||||||||||++ |++.+.
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~G-e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAG-DVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence 5889999999987665 999999999 99999999999999999999 776421
Q ss_pred -------hhhceeecCCCC--CCccH----------------------HHHHHHHcCCchh-hhcccccccHHHH-HHHH
Q 006974 378 -------SKAGLYLPAKNH--PRLPW----------------------FDLILADIGDHQS-LEQNLSTFSGHIS-RIVD 424 (623)
Q Consensus 378 -------a~~G~~vp~~~~--~~l~~----------------------~d~i~~~ig~~~~-~~~~~stfS~g~~-rl~~ 424 (623)
.+...|+|+... ..+++ ++.++..+|+.+. .++.+++|||||+ |+++
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~l 164 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 164 (262)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHH
T ss_pred hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHH
Confidence 112357888642 11122 2245667788888 8999999999999 8999
Q ss_pred HHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 425 ~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|++++.+|+++||||||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+||+++.+.+|++...
T Consensus 165 AraL~~~p~lllLDEPts~LD~~~~~~~~~-~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 234 (262)
T 1b0u_A 165 ARALAMEPDVLLFDEPTSALDPELVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 234 (262)
T ss_dssp HHHHHTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999 55556666889999999988 4579999999999998754
No 13
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.96 E-value=1.1e-28 Score=261.83 Aligned_cols=168 Identities=21% Similarity=0.262 Sum_probs=142.4
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------hhhc
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAG 381 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------a~~G 381 (623)
.++++||+|+|++..+ ++||++.+| ++++|+||||||||||||+| |+..+. .+..
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~G-e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~i 82 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPG-EILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRL 82 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCC-CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCE
Confidence 4789999999998766 999999999 99999999999999999999 776431 1223
Q ss_pred eeecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974 382 LYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (623)
Q Consensus 382 ~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLL 437 (623)
.|+||+.. ..+++ +++++..+|+.+..++.+++|||||+ |+++|++++.+|++|||
T Consensus 83 g~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLL 162 (359)
T 3fvq_A 83 GYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILL 162 (359)
T ss_dssp EEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 57887641 12222 33557788999999999999999999 89999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 438 DEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
||||+|||+..+..+...+.+.+++.|.|+|++|||.+ ...+||++..+.+|++...
T Consensus 163 DEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~ 220 (359)
T 3fvq_A 163 DEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQT 220 (359)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEE
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEE
Confidence 99999999999999998677766777999999999987 5679999999999998764
No 14
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=8.8e-29 Score=249.85 Aligned_cols=167 Identities=21% Similarity=0.233 Sum_probs=136.8
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhce
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGL 382 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G~ 382 (623)
+++++||+++|++..+ ++||++++| ++++|+||||||||||||++ |++.+. .+...
T Consensus 6 ~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 84 (240)
T 1ji0_A 6 VLEVQSLHVYYGAIHAIKGIDLKVPRG-QIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIA 84 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEE
T ss_pred eEEEEeEEEEECCeeEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEE
Confidence 5889999999988655 999999999 99999999999999999999 776431 11145
Q ss_pred eecCCCC--CCccH--------------------HHHHHHHc-CCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEe
Q 006974 383 YLPAKNH--PRLPW--------------------FDLILADI-GDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (623)
Q Consensus 383 ~vp~~~~--~~l~~--------------------~d~i~~~i-g~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLD 438 (623)
|+|+... ..+++ ++.++..+ |+.+..++.+++|||||+ |+++|++++.+|+++|||
T Consensus 85 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLD 164 (240)
T 1ji0_A 85 LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMD 164 (240)
T ss_dssp EECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 7888642 11222 23345556 366677889999999999 899999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 439 Ep~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+||+++.+.+|++...
T Consensus 165 EPts~LD~~~~~~l~~-~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 220 (240)
T 1ji0_A 165 EPSLGLAPILVSEVFE-VIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLE 220 (240)
T ss_dssp CTTTTCCHHHHHHHHH-HHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred CCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999 45556657889999999986 6789999999999998654
No 15
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.96 E-value=1.5e-28 Score=250.62 Aligned_cols=167 Identities=16% Similarity=0.136 Sum_probs=138.1
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhce
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGL 382 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G~ 382 (623)
+++++||+++|++..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+...
T Consensus 7 ~l~i~~l~~~y~~~~vl~~vsl~i~~G-e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 85 (257)
T 1g6h_A 7 ILRTENIVKYFGEFKALDGVSISVNKG-DVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 85 (257)
T ss_dssp EEEEEEEEEEETTEEEEEEECCEEETT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred EEEEeeeEEEECCEeeEeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 5889999999988665 999999999 99999999999999999999 776431 11234
Q ss_pred eecCCCCC--------------Cc---c-------------------HHHHHHHHcCCchhhhcccccccHHHH-HHHHH
Q 006974 383 YLPAKNHP--------------RL---P-------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDI 425 (623)
Q Consensus 383 ~vp~~~~~--------------~l---~-------------------~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~ 425 (623)
|+|+.... .. + .++.++..+|+.+..++.+++|||||+ |+++|
T Consensus 86 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iA 165 (257)
T 1g6h_A 86 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIG 165 (257)
T ss_dssp ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred EEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHH
Confidence 77776410 00 1 123456778888888999999999999 89999
Q ss_pred HHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 426 ~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
++++.+|+++||||||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+||+++.+.+|++...
T Consensus 166 raL~~~p~lllLDEPts~LD~~~~~~l~~-~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 234 (257)
T 1g6h_A 166 RALMTNPKMIVMDEPIAGVAPGLAHDIFN-HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE 234 (257)
T ss_dssp HHHHTCCSEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEE
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999 55556666899999999987 5679999999999988754
No 16
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.96 E-value=2e-28 Score=260.01 Aligned_cols=168 Identities=15% Similarity=0.146 Sum_probs=139.9
Q ss_pred CcEEEceeeeecCCc----cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------
Q 006974 325 SEMTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------- 377 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~----~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------- 377 (623)
.+++++||+++|++. .+ ++||++.+| ++++|+||||||||||||++ |+..+.
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~G-ei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~ 101 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAG-QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCC-CEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 479999999999642 23 999999999 99999999999999999999 766431
Q ss_pred --hhhceeecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCC
Q 006974 378 --SKAGLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (623)
Q Consensus 378 --a~~G~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~ 431 (623)
.+...|+||... ..+++ ++.++..+|+.+..++.+++|||||+ |+++|++++.+
T Consensus 102 ~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~ 181 (366)
T 3tui_C 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASN 181 (366)
T ss_dssp HHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTC
T ss_pred HHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 122458888752 12222 23457788999899999999999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 432 ESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~-~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
|++|||||||+||||.....+.. ++..+. +.|.|+|++||+++ +..+||++..+.+|++...
T Consensus 182 P~lLLlDEPTs~LD~~~~~~i~~-lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~ 245 (366)
T 3tui_C 182 PKVLLCDQATSALDPATTRSILE-LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 245 (366)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHH-HHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEC
T ss_pred CCEEEEECCCccCCHHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999 555565 45899999999998 5679999999999998765
No 17
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.95 E-value=4.1e-28 Score=257.46 Aligned_cols=171 Identities=16% Similarity=0.117 Sum_probs=140.0
Q ss_pred CCCcEEEceeeeec-CCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhc
Q 006974 323 ENSEMTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAG 381 (623)
Q Consensus 323 g~~~l~~~~l~~~y-~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G 381 (623)
|...++++||+++| ++..+ ++||++++| ++++|+||||||||||||+| |++.+. .+..
T Consensus 11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i 89 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREG-EMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV 89 (355)
T ss_dssp CCEEEEEEEEEECCTTSTTCEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSE
T ss_pred CCceEEEEEEEEEEcCCCEEEeeeEEEECCC-CEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcE
Confidence 44579999999999 77655 999999999 99999999999999999999 776431 1123
Q ss_pred eeecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974 382 LYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (623)
Q Consensus 382 ~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLL 437 (623)
.|+|++.. ..+++ ++.++..+|+.+..++.+++|||||+ |+++|++++.+|+++||
T Consensus 90 g~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL 169 (355)
T 1z47_A 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLF 169 (355)
T ss_dssp EEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 47777641 12222 23456778888889999999999999 89999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 438 DEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
||||+|||+..+..+...+.+...+.|.|+|++|||.+ ...+||++..+.+|++...
T Consensus 170 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~ 227 (355)
T 1z47_A 170 DEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQF 227 (355)
T ss_dssp ESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999554433445899999999987 5679999999999998754
No 18
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.95 E-value=5e-28 Score=246.18 Aligned_cols=166 Identities=16% Similarity=0.159 Sum_probs=136.8
Q ss_pred cEEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------hhhceeecCCCCC--Ccc
Q 006974 326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------SKAGLYLPAKNHP--RLP 393 (623)
Q Consensus 326 ~l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------a~~G~~vp~~~~~--~l~ 393 (623)
+++++||+++|+ +..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+...|+|+.... .++
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~t 82 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKG-DILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYS 82 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETT-CEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCB
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCC
Confidence 578999999998 6655 999999999 99999999999999999999 776542 1223578876421 111
Q ss_pred H-------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHH
Q 006974 394 W-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (623)
Q Consensus 394 ~-------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~ 447 (623)
+ ++.++..+|+.+..++.+++|||||+ |+++|++++.+|+++||||||+|||+.
T Consensus 83 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~ 162 (253)
T 2nq2_C 83 VLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLA 162 (253)
T ss_dssp HHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHH
T ss_pred HHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 1 23456677888888999999999999 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcC-CcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 448 EGVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 448 ~~~~l~~all~~l~~~-~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
....+... +..+.+. |.|+|++||+.+ +..+||+++.+.+|+ ...
T Consensus 163 ~~~~l~~~-l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~ 209 (253)
T 2nq2_C 163 NQDIVLSL-LIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKF 209 (253)
T ss_dssp HHHHHHHH-HHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEE
T ss_pred HHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-Eec
Confidence 99999994 4556554 889999999988 457999999999998 543
No 19
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.95 E-value=4.7e-28 Score=258.69 Aligned_cols=167 Identities=19% Similarity=0.236 Sum_probs=139.8
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeec
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP 385 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp 385 (623)
.++++||+|+|++..+ ++||++.+| ++++|+||||||||||||+| |+..+. .+...|+|
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~G-e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~Vf 81 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEG-EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVF 81 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEEC
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCC-CEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEe
Confidence 4789999999998766 999999999 99999999999999999999 776531 11234788
Q ss_pred CCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974 386 AKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (623)
Q Consensus 386 ~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~ 441 (623)
|+.. ..+++ ++.++..+|+.+..++.+++|||||+ |+++|++++.+|++|||||||
T Consensus 82 Q~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPt 161 (381)
T 3rlf_A 82 QSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161 (381)
T ss_dssp TTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred cCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 8752 12222 23457788999999999999999999 899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-cCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 442 SGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 442 ~glD~~~~~~l~~all~~l~-~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+|||+..+..+... +..+. +.|.|+|++|||.+ ...+||++..+.+|++...
T Consensus 162 s~LD~~~~~~l~~~-l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~ 215 (381)
T 3rlf_A 162 SNLDAALRVQMRIE-ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV 215 (381)
T ss_dssp TTSCHHHHHHHHHH-HHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred cCCCHHHHHHHHHH-HHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999994 44554 45899999999987 5679999999999998764
No 20
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.95 E-value=6.1e-28 Score=247.37 Aligned_cols=167 Identities=13% Similarity=0.119 Sum_probs=137.1
Q ss_pred cEEEceeeeecC--C---ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------hhhc
Q 006974 326 EMTVGSLSKGIS--D---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------SKAG 381 (623)
Q Consensus 326 ~l~~~~l~~~y~--~---~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------a~~G 381 (623)
+++++||+++|+ + ..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~G-e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i 80 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEG-ECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNI 80 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhE
Confidence 378999999997 4 344 999999999 99999999999999999999 776431 1223
Q ss_pred eeecCCC---CCCccH--------------------HHHHHHHcCCc--hhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974 382 LYLPAKN---HPRLPW--------------------FDLILADIGDH--QSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (623)
Q Consensus 382 ~~vp~~~---~~~l~~--------------------~d~i~~~ig~~--~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll 435 (623)
.|+|+.. ...+++ ++.++..+|+. +..++.+++|||||+ |+++|++++.+|+++
T Consensus 81 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll 160 (266)
T 2yz2_A 81 GIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDIL 160 (266)
T ss_dssp EEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 5788763 111111 34567788888 888999999999999 899999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 436 LLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
||||||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 161 lLDEPts~LD~~~~~~l~~-~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~ 219 (266)
T 2yz2_A 161 ILDEPLVGLDREGKTDLLR-IVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFD 219 (266)
T ss_dssp EEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEE
T ss_pred EEcCccccCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999 45556555889999999987 5568999999999988654
No 21
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.95 E-value=1e-27 Score=254.84 Aligned_cols=168 Identities=18% Similarity=0.172 Sum_probs=139.0
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeec
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP 385 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp 385 (623)
+++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |++.+. .+...|+|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDG-EFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVF 81 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCC-CEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEe
Confidence 4789999999988655 999999999 99999999999999999999 776431 12235788
Q ss_pred CCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974 386 AKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (623)
Q Consensus 386 ~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~ 441 (623)
|+.. ..+++ ++.++..+|+.+..++.+++|||||+ |+++|++++.+|+++||||||
T Consensus 82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~ 161 (359)
T 2yyz_A 82 QNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPL 161 (359)
T ss_dssp SSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 8641 11222 34567788888889999999999999 899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 442 ~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+|||+..+..+...+.+...+.|.|+|++|||.+ ...+||++..+.+|++...
T Consensus 162 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~ 215 (359)
T 2yyz_A 162 SNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQY 215 (359)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999554433445899999999987 5579999999999998754
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.95 E-value=3.1e-28 Score=251.07 Aligned_cols=168 Identities=14% Similarity=0.135 Sum_probs=136.8
Q ss_pred CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------hhh
Q 006974 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKA 380 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------a~~ 380 (623)
.+++++||+++|++..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+.
T Consensus 20 ~~l~~~~l~~~y~~~~vL~~isl~i~~G-e~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 98 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGKTILKKISWQIAKG-DKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQH 98 (279)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTT
T ss_pred ceEEEEeEEEEECCEEEEEeeeEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCc
Confidence 36899999999988665 999999999 99999999999999999999 776431 111
Q ss_pred ceeecCCCC----CCccH-------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcC
Q 006974 381 GLYLPAKNH----PRLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS 430 (623)
Q Consensus 381 G~~vp~~~~----~~l~~-------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~ 430 (623)
..|+|+... ..+++ ++.++..+|+.+..++.+++|||||+ |+++|++++.
T Consensus 99 i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~ 178 (279)
T 2ihy_A 99 IGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMG 178 (279)
T ss_dssp EEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT
T ss_pred EEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhC
Confidence 346666421 10111 23456677888888999999999999 8999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEE--EEEcCchhH-HhhccccceeeCceEEEe
Q 006974 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLA--VVTTHYADL-SCLKDKDTRFENAATEFS 494 (623)
Q Consensus 431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~v--ii~TH~~~l-~~~~~~~~~i~~g~~~~~ 494 (623)
+|+++||||||+|||+.....+... +..+.++|.|+ |++||+.+. ..+||+++.+.+|++...
T Consensus 179 ~p~lLlLDEPts~LD~~~~~~l~~~-l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~ 244 (279)
T 2ihy_A 179 QPQVLILDEPAAGLDFIARESLLSI-LDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQ 244 (279)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHH-HHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEE
T ss_pred CCCEEEEeCCccccCHHHHHHHHHH-HHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999994 45555558899 999999874 579999999999998754
No 23
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.95 E-value=2e-27 Score=240.88 Aligned_cols=166 Identities=15% Similarity=0.142 Sum_probs=131.1
Q ss_pred cEEEceeeeec--CCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhc
Q 006974 326 EMTVGSLSKGI--SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 381 (623)
Q Consensus 326 ~l~~~~l~~~y--~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G 381 (623)
.++++||+++| ++..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+..
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQG-EVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 47899999999 34445 999999999 99999999999999999999 776421 1223
Q ss_pred eeecCCCCC-CccHHH---------------HHHHHcCCchhhhc-----------ccccccHHHH-HHHHHHHhcCCCc
Q 006974 382 LYLPAKNHP-RLPWFD---------------LILADIGDHQSLEQ-----------NLSTFSGHIS-RIVDILELVSRES 433 (623)
Q Consensus 382 ~~vp~~~~~-~l~~~d---------------~i~~~ig~~~~~~~-----------~~stfS~g~~-rl~~~~~l~~~~~ 433 (623)
.|+|+.... ..++.+ .++..+++.+.+++ ..++|||||+ |+++|++++.+|+
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ 165 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 165 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 578886521 112222 33444565554443 4589999999 8999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 434 LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
++||||||+|||+.....+...+ ..+. .+.|+|++||+.+....||+++.+.+|++...
T Consensus 166 lllLDEPts~LD~~~~~~i~~~l-~~~~-~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~ 224 (247)
T 2ff7_A 166 ILIFDEATSALDYESEHVIMRNM-HKIC-KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQ 224 (247)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHH-HHHH-TTSEEEEECSSGGGGTTSSEEEEEETTEEEEE
T ss_pred EEEEeCCcccCCHHHHHHHHHHH-HHHc-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999954 4455 48899999999986667999999999998754
No 24
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.95 E-value=1.4e-27 Score=254.16 Aligned_cols=168 Identities=16% Similarity=0.192 Sum_probs=138.2
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeec
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP 385 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp 385 (623)
.++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |+..+. .+...|+|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDG-EFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVF 81 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCC-CEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEe
Confidence 4789999999987655 999999999 99999999999999999999 776431 12235788
Q ss_pred CCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974 386 AKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (623)
Q Consensus 386 ~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~ 441 (623)
|+.. ..+++ +++++..+|+.+..++.+++|||||+ |+++|++++.+|+++||||||
T Consensus 82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 161 (362)
T 2it1_A 82 QNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPL 161 (362)
T ss_dssp TTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGG
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 8642 12222 23456778888888999999999999 899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 442 ~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+|||+..+..+...+.+...+.|.|+|++|||.+ ...+||++..+.+|++...
T Consensus 162 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~ 215 (362)
T 2it1_A 162 SNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQV 215 (362)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999544433445899999999987 5679999999999998754
No 25
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.95 E-value=1e-27 Score=241.95 Aligned_cols=164 Identities=20% Similarity=0.234 Sum_probs=133.8
Q ss_pred EEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeecCC
Q 006974 327 MTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAK 387 (623)
Q Consensus 327 l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp~~ 387 (623)
++++||+++|++. + ++||++++ ++++|+||||||||||||++ |++.+. .+...|+|+.
T Consensus 2 l~~~~l~~~y~~~-l~~isl~i~~--e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (240)
T 2onk_A 2 FLKVRAEKRLGNF-RLNVDFEMGR--DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQD 78 (240)
T ss_dssp CEEEEEEEEETTE-EEEEEEEECS--SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSS
T ss_pred EEEEEEEEEeCCE-EeeeEEEECC--EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCC
Confidence 6789999999864 5 99999987 69999999999999999999 776531 1112467776
Q ss_pred CC--CCccH-------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCC
Q 006974 388 NH--PRLPW-------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 445 (623)
Q Consensus 388 ~~--~~l~~-------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD 445 (623)
.. ..+++ ++.++..+|+.+..++.+++|||||+ |+++|++++.+|+++||||||+|||
T Consensus 79 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD 158 (240)
T 2onk_A 79 YALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVD 158 (240)
T ss_dssp CCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCC
T ss_pred CccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 41 11111 23456778888888999999999999 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-cCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 446 PSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 446 ~~~~~~l~~all~~l~-~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+.....+... +..+. +.|.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 159 ~~~~~~~~~~-l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~ 208 (240)
T 2onk_A 159 LKTKGVLMEE-LRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEK 208 (240)
T ss_dssp HHHHHHHHHH-HHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999994 45554 44889999999987 5689999999999998764
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.95 E-value=1.3e-27 Score=245.50 Aligned_cols=168 Identities=13% Similarity=0.127 Sum_probs=132.6
Q ss_pred CcEEEceeeeecCC---ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hh
Q 006974 325 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SK 379 (623)
Q Consensus 325 ~~l~~~~l~~~y~~---~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~ 379 (623)
++++++||+++|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+. .+
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPG-KVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 47999999999975 444 999999999 99999999999999999999 776431 12
Q ss_pred hceeecCCCCC-CccHHHHH-------------------------HHHc--CCchhhhcccccccHHHH-HHHHHHHhcC
Q 006974 380 AGLYLPAKNHP-RLPWFDLI-------------------------LADI--GDHQSLEQNLSTFSGHIS-RIVDILELVS 430 (623)
Q Consensus 380 ~G~~vp~~~~~-~l~~~d~i-------------------------~~~i--g~~~~~~~~~stfS~g~~-rl~~~~~l~~ 430 (623)
...|+|+.... ..++.+++ +..+ |+...+++.+++|||||+ |+++|++++.
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 24588887421 11333332 2222 333345677899999999 8999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 431 RESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~-~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
+|++|||||||+|||+.....+.. ++..+. +.+.|+|++||+.+....||+++.+.+|++...
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~-~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~ 237 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQR-LLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQ 237 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHH-HHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEE
T ss_pred CCCEEEEECCccCCCHHHHHHHHH-HHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999 455554 458899999999986667999999999988654
No 27
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.95 E-value=1.8e-27 Score=252.25 Aligned_cols=167 Identities=20% Similarity=0.222 Sum_probs=137.6
Q ss_pred EEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeecCC
Q 006974 327 MTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAK 387 (623)
Q Consensus 327 l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp~~ 387 (623)
++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |+..+. .+...|+|++
T Consensus 2 l~~~~l~~~y~~~~l~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~ 80 (348)
T 3d31_A 2 IEIESLSRKWKNFSLDNLSLKVESG-EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQN 80 (348)
T ss_dssp EEEEEEEEECSSCEEEEEEEEECTT-CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTT
T ss_pred EEEEEEEEEECCEEEeeeEEEEcCC-CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecC
Confidence 678999999987623 999999999 99999999999999999999 776431 1223578887
Q ss_pred CC--CCccH------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCH
Q 006974 388 NH--PRLPW------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP 446 (623)
Q Consensus 388 ~~--~~l~~------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~ 446 (623)
.. ..+++ ++.++..+|+.+..++.+++|||||+ |+++|++++.+|+++||||||+|||+
T Consensus 81 ~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~ 160 (348)
T 3d31_A 81 YSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDP 160 (348)
T ss_dssp CCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCH
T ss_pred cccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCH
Confidence 42 12222 23456778888888999999999999 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 447 SEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 447 ~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
..+..+...+.+...+.|.|+|++|||.+ ...+||++..+.+|++...
T Consensus 161 ~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~ 209 (348)
T 3d31_A 161 RTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV 209 (348)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999554433456899999999987 5689999999999998754
No 28
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.95 E-value=8.8e-28 Score=244.00 Aligned_cols=167 Identities=21% Similarity=0.193 Sum_probs=129.7
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hh--hhhh-------------------hhh-
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GL--ASLM-------------------SKA- 380 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl--~~~~-------------------a~~- 380 (623)
+++++||+++|++..+ ++||++.+| ++++|+||||||||||||++ |+ +.+. .+.
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKG-EVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 4789999999987666 999999999 99999999999999999999 76 3210 112
Q ss_pred ceeecCCCCC--CccH------------------------HHHHHHHcCC-chhhhccccc-ccHHHH-HHHHHHHhcCC
Q 006974 381 GLYLPAKNHP--RLPW------------------------FDLILADIGD-HQSLEQNLST-FSGHIS-RIVDILELVSR 431 (623)
Q Consensus 381 G~~vp~~~~~--~l~~------------------------~d~i~~~ig~-~~~~~~~~st-fS~g~~-rl~~~~~l~~~ 431 (623)
..|+|+.... .+++ ++.++..+|+ .+..++.+++ |||||+ |+++|++++.+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~ 161 (250)
T 2d2e_A 82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLE 161 (250)
T ss_dssp BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHC
T ss_pred EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcC
Confidence 2467776421 1111 1234556677 4667888999 999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHH-hh-ccccceeeCceEEEe
Q 006974 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CL-KDKDTRFENAATEFS 494 (623)
Q Consensus 432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~-~~-~~~~~~i~~g~~~~~ 494 (623)
|+++||||||+|||+.....+.. ++..+.+.|.|+|++||+.++. .+ ||+++.+.+|++...
T Consensus 162 p~lllLDEPts~LD~~~~~~l~~-~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~ 225 (250)
T 2d2e_A 162 PTYAVLDETDSGLDIDALKVVAR-GVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVAT 225 (250)
T ss_dssp CSEEEEECGGGTTCHHHHHHHHH-HHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEE
T ss_pred CCEEEEeCCCcCCCHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEE
Confidence 99999999999999999999999 5566666688999999998854 56 599999999988754
No 29
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.95 E-value=3.9e-27 Score=251.84 Aligned_cols=168 Identities=15% Similarity=0.193 Sum_probs=137.9
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------------hh
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SK 379 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------------a~ 379 (623)
+++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |+..+. .+
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r 81 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDG-EFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCC-CEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHC
Confidence 4789999999987655 999999999 99999999999999999999 776431 01
Q ss_pred hceeecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974 380 AGLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (623)
Q Consensus 380 ~G~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll 435 (623)
...|+||+.. ..+++ ++.++..+|+.+..++.+++|||||+ |+++|++++.+|+++
T Consensus 82 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lL 161 (372)
T 1g29_1 82 DIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVF 161 (372)
T ss_dssp SEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 1347787642 12222 23456677888888999999999999 899999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 436 LLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
||||||+|||+..+..+...+.+...+.|.|+|++|||.+ ...+||++..+.+|++...
T Consensus 162 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~ 221 (372)
T 1g29_1 162 LMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQV 221 (372)
T ss_dssp EEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred EECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 9999999999999999999554433445899999999987 5579999999999998754
No 30
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.95 E-value=2.1e-27 Score=253.68 Aligned_cols=168 Identities=17% Similarity=0.223 Sum_probs=137.2
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeec
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP 385 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp 385 (623)
.++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |+..+. .+...|+|
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 89 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDG-EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 89 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCC-CEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEe
Confidence 4889999999987655 999999999 99999999999999999999 776431 12234778
Q ss_pred CCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974 386 AKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (623)
Q Consensus 386 ~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~ 441 (623)
|+.. ..+++ ++.++..+|+.+..++.+++|||||+ |+++|++++.+|+++||||||
T Consensus 90 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 169 (372)
T 1v43_A 90 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPL 169 (372)
T ss_dssp C------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTT
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 7641 11122 33567788998889999999999999 899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 442 ~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+|||+..+..+...+.+...+.|.|+|++|||.+ ...+||++..+.+|++...
T Consensus 170 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~ 223 (372)
T 1v43_A 170 SNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQI 223 (372)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999554433445899999999987 5579999999999998754
No 31
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.95 E-value=2.7e-27 Score=251.62 Aligned_cols=168 Identities=20% Similarity=0.162 Sum_probs=138.1
Q ss_pred cEEEceeeeecCCcc--c--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------h
Q 006974 326 EMTVGSLSKGISDFP--V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------S 378 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~--v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------------a 378 (623)
+++++||+++|++.. + ++||++.+| ++++|+||||||||||||+| |++.+. .
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENG-ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTT-CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence 478999999998765 5 999999999 99999999999999999999 776431 0
Q ss_pred hhceeecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcE
Q 006974 379 KAGLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (623)
Q Consensus 379 ~~G~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~L 434 (623)
+...|+||... ..+++ ++.++..+|+.+..++.+++|||||+ |+++|++++.+|++
T Consensus 82 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~l 161 (353)
T 1oxx_K 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSL 161 (353)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 11347777641 11222 23467788888889999999999999 89999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 435 lLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
+||||||+|||+..+..+...+.+...+.|.|+|++|||.+ ...+||++..+.+|++...
T Consensus 162 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~ 222 (353)
T 1oxx_K 162 LLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQV 222 (353)
T ss_dssp EEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999554433445899999999987 5679999999999998754
No 32
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.94 E-value=5.8e-27 Score=240.22 Aligned_cols=167 Identities=21% Similarity=0.205 Sum_probs=133.6
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhh--hh-------------------hhhh-
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SL-------------------MSKA- 380 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~--~~-------------------~a~~- 380 (623)
+++++||+++|++..+ ++||++.+| ++++|+||||||||||||++ |++ .+ ..+.
T Consensus 20 ~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 98 (267)
T 2zu0_C 20 MLSIKDLHVSVEDKAILRGLSLDVHPG-EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEG 98 (267)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHT
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCC
Confidence 6899999999987665 999999999 99999999999999999999 763 21 0112
Q ss_pred ceeecCCCCC--CccH----------------------------HHHHHHHcCCc-hhhhcccc-cccHHHH-HHHHHHH
Q 006974 381 GLYLPAKNHP--RLPW----------------------------FDLILADIGDH-QSLEQNLS-TFSGHIS-RIVDILE 427 (623)
Q Consensus 381 G~~vp~~~~~--~l~~----------------------------~d~i~~~ig~~-~~~~~~~s-tfS~g~~-rl~~~~~ 427 (623)
..|+|+.... .++. ++.++..+|+. +..++.++ +|||||+ |+++|++
T Consensus 99 i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAra 178 (267)
T 2zu0_C 99 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQM 178 (267)
T ss_dssp EEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHH
T ss_pred EEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHH
Confidence 3478886421 1111 12345667775 45677887 5999999 8999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHH-hh-ccccceeeCceEEEe
Q 006974 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CL-KDKDTRFENAATEFS 494 (623)
Q Consensus 428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~-~~-~~~~~~i~~g~~~~~ 494 (623)
++.+|+++||||||+|||+.....+.. ++..+.+.|.|+|++||+.++. .+ ||+++.+.+|++...
T Consensus 179 L~~~p~lLlLDEPts~LD~~~~~~l~~-~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~ 246 (267)
T 2zu0_C 179 AVLEPELCILDESDSGLDIDALKVVAD-GVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS 246 (267)
T ss_dssp HHHCCSEEEEESTTTTCCHHHHHHHHH-HHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEE
T ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEE
Confidence 999999999999999999999999998 5566666688999999998855 44 899999999998754
No 33
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.94 E-value=2.2e-27 Score=235.43 Aligned_cols=157 Identities=18% Similarity=0.248 Sum_probs=126.5
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------hhhceeecCCC
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------SKAGLYLPAKN 388 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------a~~G~~vp~~~ 388 (623)
.++++||+++|++ .+ ++||++.+| ++++|+||||||||||||++ |++.+. .+...|+|+..
T Consensus 10 ~l~~~~ls~~y~~-~il~~vsl~i~~G-e~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~ 87 (214)
T 1sgw_A 10 KLEIRDLSVGYDK-PVLERITMTIEKG-NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEI 87 (214)
T ss_dssp EEEEEEEEEESSS-EEEEEEEEEEETT-CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSC
T ss_pred eEEEEEEEEEeCC-eEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCC
Confidence 5899999999988 65 999999999 99999999999999999999 776431 12235788865
Q ss_pred CC--CccHH-------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCH
Q 006974 389 HP--RLPWF-------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP 446 (623)
Q Consensus 389 ~~--~l~~~-------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~ 446 (623)
.. .+++. +.++..+|+.+. ++.+++|||||+ |+++|++++.+|+++||||||+|||+
T Consensus 88 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~ 166 (214)
T 1sgw_A 88 IVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 166 (214)
T ss_dssp CCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCT
T ss_pred cCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCH
Confidence 21 12222 234566777666 889999999999 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhcccccee
Q 006974 447 SEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRF 486 (623)
Q Consensus 447 ~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i 486 (623)
.....+... +..+.+.|.|+|++||+.+ +..+|++++.+
T Consensus 167 ~~~~~l~~~-l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~ 206 (214)
T 1sgw_A 167 DSKHKVLKS-ILEILKEKGIVIISSREELSYCDVNENLHKY 206 (214)
T ss_dssp TTHHHHHHH-HHHHHHHHSEEEEEESSCCTTSSEEEEGGGG
T ss_pred HHHHHHHHH-HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe
Confidence 999999994 4556655789999999987 45677776644
No 34
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.94 E-value=1e-26 Score=235.89 Aligned_cols=164 Identities=19% Similarity=0.251 Sum_probs=134.6
Q ss_pred cEEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhhceeec
Q 006974 326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP 385 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~G~~vp 385 (623)
+++++||+++ ..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+...|+|
T Consensus 4 ~l~~~~l~~~---~vl~~vsl~i~~G-e~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~ 79 (249)
T 2qi9_C 4 VMQLQDVAES---TRLGPLSGEVRAG-EILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLS 79 (249)
T ss_dssp EEEEEEEEET---TTEEEEEEEEETT-CEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEEC
T ss_pred EEEEEceEEE---EEEeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEEC
Confidence 4788999987 234 999999999 99999999999999999999 776421 12235788
Q ss_pred CCCCC--CccH----------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCc-------EEEEeC
Q 006974 386 AKNHP--RLPW----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES-------LVLIDE 439 (623)
Q Consensus 386 ~~~~~--~l~~----------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~-------LlLLDE 439 (623)
+.... .+++ ++.++..+|+.+..++.+++|||||+ |+++|++++.+|+ ++||||
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDE 159 (249)
T 2qi9_C 80 QQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDE 159 (249)
T ss_dssp SCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESS
T ss_pred CCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEEC
Confidence 86421 1122 34567778888888999999999999 8999999999999 999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH-HhhccccceeeCceEEEe
Q 006974 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (623)
Q Consensus 440 p~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l-~~~~~~~~~i~~g~~~~~ 494 (623)
||+|||+.....+.. ++..+.++|.|+|++||+.+. ..+|++++.+.+|++...
T Consensus 160 Pts~LD~~~~~~l~~-~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 214 (249)
T 2qi9_C 160 PMNSLDVAQQSALDK-ILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLAS 214 (249)
T ss_dssp TTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred CcccCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999 455566558899999999885 579999999999988654
No 35
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.94 E-value=3.2e-27 Score=238.88 Aligned_cols=164 Identities=13% Similarity=0.132 Sum_probs=128.8
Q ss_pred EEEceeeeec-CCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhcee
Q 006974 327 MTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY 383 (623)
Q Consensus 327 l~~~~l~~~y-~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~~ 383 (623)
++++||+++| ++..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+...|
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPN-SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTT-EEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 6789999999 55555 999999999 99999999999999999999 776431 112347
Q ss_pred ecCCCCC-CccH----------------HHHHHHHcCCchhhh-----------cccccccHHHH-HHHHHHHhcCCCcE
Q 006974 384 LPAKNHP-RLPW----------------FDLILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVSRESL 434 (623)
Q Consensus 384 vp~~~~~-~l~~----------------~d~i~~~ig~~~~~~-----------~~~stfS~g~~-rl~~~~~l~~~~~L 434 (623)
+|+.... ..++ +..++..+++.+.++ +.+++|||||+ |+++|++++.+|++
T Consensus 81 v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 160 (243)
T 1mv5_A 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (243)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE
Confidence 7776421 0112 233444556554433 34689999999 89999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEE
Q 006974 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (623)
Q Consensus 435 lLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~ 493 (623)
+||||||+|||+.....+... +..+. .+.|+|++||+.+....||+++.+.+|++..
T Consensus 161 llLDEPts~LD~~~~~~i~~~-l~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~ 217 (243)
T 1mv5_A 161 LMLDEATASLDSESESMVQKA-LDSLM-KGRTTLVIAHRLSTIVDADKIYFIEKGQITG 217 (243)
T ss_dssp EEEECCSCSSCSSSCCHHHHH-HHHHH-TTSEEEEECCSHHHHHHCSEEEEEETTEECC
T ss_pred EEEECCcccCCHHHHHHHHHH-HHHhc-CCCEEEEEeCChHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999995 44555 5889999999998666799999999998753
No 36
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.94 E-value=9.8e-27 Score=237.83 Aligned_cols=161 Identities=22% Similarity=0.237 Sum_probs=132.3
Q ss_pred EEEceeeeecCC----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh----------------hhce-
Q 006974 327 MTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS----------------KAGL- 382 (623)
Q Consensus 327 l~~~~l~~~y~~----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a----------------~~G~- 382 (623)
++++||+++|++ ..+ ++||++. | ++++|+||||||||||||++ |++ +.. +...
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-G-e~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-G-EKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-S-SEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-C-EEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 678999999976 555 9999999 9 99999999999999999999 776 521 1123
Q ss_pred eecCCCCCCccH-----------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCC
Q 006974 383 YLPAKNHPRLPW-----------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 443 (623)
Q Consensus 383 ~vp~~~~~~l~~-----------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~g 443 (623)
|+|+.....+++ ++.++..+|+. +..++++++|||||+ |+++|++++.+|+++||||||+|
T Consensus 79 ~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~ 158 (263)
T 2pjz_A 79 NLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFEN 158 (263)
T ss_dssp CCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTT
T ss_pred EeCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 788764222232 23456778888 888999999999999 89999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhcc-ccceeeCceEEEe
Q 006974 444 TDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKD-KDTRFENAATEFS 494 (623)
Q Consensus 444 lD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~-~~~~i~~g~~~~~ 494 (623)
||+.....+.. ++..+.+ |+|++||+.+ +..+|+ +++.+.+|++...
T Consensus 159 LD~~~~~~l~~-~L~~~~~---tviivtHd~~~~~~~~d~~i~~l~~G~i~~~ 207 (263)
T 2pjz_A 159 VDAARRHVISR-YIKEYGK---EGILVTHELDMLNLYKEYKAYFLVGNRLQGP 207 (263)
T ss_dssp CCHHHHHHHHH-HHHHSCS---EEEEEESCGGGGGGCTTSEEEEEETTEEEEE
T ss_pred cCHHHHHHHHH-HHHHhcC---cEEEEEcCHHHHHHhcCceEEEEECCEEEEe
Confidence 99999999998 4444433 9999999987 567999 9999999988654
No 37
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.94 E-value=2e-26 Score=235.31 Aligned_cols=167 Identities=12% Similarity=0.065 Sum_probs=130.2
Q ss_pred CcEEEceeeeecCCc---cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh------------------hhhh
Q 006974 325 SEMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKA 380 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~---~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~------------------~a~~ 380 (623)
..++++||+++|++. .+ ++||++.+| ++++|+||||||||||||++ |++.+ ..+.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSG-TTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCC-CEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhcc
Confidence 368999999999752 34 999999999 99999999999999999999 76532 0122
Q ss_pred ceeecCCCCC-CccHHHH---------------HHHHcCCchhh-----------hcccccccHHHH-HHHHHHHhcCCC
Q 006974 381 GLYLPAKNHP-RLPWFDL---------------ILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRE 432 (623)
Q Consensus 381 G~~vp~~~~~-~l~~~d~---------------i~~~ig~~~~~-----------~~~~stfS~g~~-rl~~~~~l~~~~ 432 (623)
..|+|+.... ..++.++ ++..+++.+.+ .+.+++|||||+ |+++|++++.+|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 3578886521 1123332 23334544332 245689999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
+++||||||+|||+.....+.. ++..+.+ +.|+|++||+.+....||+++.+.+|++...
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~-~l~~l~~-~~tviivtH~~~~~~~~d~i~~l~~G~i~~~ 234 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQK-AVEDLRK-NRTLIIIAHRLSTISSAESIILLNKGKIVEK 234 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHH-HHHHHTT-TSEEEEECSSGGGSTTCSEEEEEETTEEEEE
T ss_pred CEEEEECccccCCHHHHHHHHH-HHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999998 4555654 7899999999886667999999999988654
No 38
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.94 E-value=4.4e-27 Score=235.73 Aligned_cols=168 Identities=15% Similarity=0.102 Sum_probs=128.7
Q ss_pred CcEEEceeeeecC--Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------hhceeecCCCCC-Cc
Q 006974 325 SEMTVGSLSKGIS--DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------KAGLYLPAKNHP-RL 392 (623)
Q Consensus 325 ~~l~~~~l~~~y~--~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------~~G~~vp~~~~~-~l 392 (623)
++++++||+++|+ +..+ ++||++.+| ++++|+||||||||||||++ |++.+.. ....|+|+.... ..
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~ 83 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERG-QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPG 83 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSB
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCC
Confidence 3689999999995 3444 999999999 99999999999999999999 7765431 112478886421 11
Q ss_pred cHHHH--------------HHHHcCCchhhh-----------cccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCH
Q 006974 393 PWFDL--------------ILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP 446 (623)
Q Consensus 393 ~~~d~--------------i~~~ig~~~~~~-----------~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~ 446 (623)
++.++ ++...++.+.++ +..++|||||+ |+++|++++.+|+++||||||+|||+
T Consensus 84 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~ 163 (229)
T 2pze_A 84 TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 163 (229)
T ss_dssp CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCH
T ss_pred CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCH
Confidence 23332 223334433332 23589999999 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 447 SEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 447 ~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
.....+...++..+. .+.|+|++||+.+....||+++.+.+|++...
T Consensus 164 ~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~ 210 (229)
T 2pze_A 164 LTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSYFY 210 (229)
T ss_dssp HHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhh-CCCEEEEEcCChHHHHhCCEEEEEECCEEEEE
Confidence 999998874333333 37899999999886667999999999988754
No 39
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.94 E-value=8.3e-27 Score=234.97 Aligned_cols=167 Identities=15% Similarity=0.141 Sum_probs=128.4
Q ss_pred cEEEceeeeecC--Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhh------hceeecCCCC-CCcc
Q 006974 326 EMTVGSLSKGIS--DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK------AGLYLPAKNH-PRLP 393 (623)
Q Consensus 326 ~l~~~~l~~~y~--~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~------~G~~vp~~~~-~~l~ 393 (623)
+++++||+++|+ +..+ ++||++.+| ++++|+||||||||||||++ |++.+... ...|+|+... ...+
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~t 81 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEG-ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDS 81 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcC
Confidence 478999999997 3444 999999999 99999999999999999999 77654311 1247888642 1122
Q ss_pred HHHHH--------------HHHcCCch-----------hhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHH
Q 006974 394 WFDLI--------------LADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (623)
Q Consensus 394 ~~d~i--------------~~~ig~~~-----------~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~ 447 (623)
+.+++ ...++..+ .+++.+++|||||+ |+++|++++.+|+++||||||+|||+.
T Consensus 82 v~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~ 161 (237)
T 2cbz_A 82 LRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH 161 (237)
T ss_dssp HHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHH
T ss_pred HHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence 33332 22222221 13567899999999 899999999999999999999999999
Q ss_pred HHHHHHHHHH--HHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 448 EGVALATSIL--QYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 448 ~~~~l~~all--~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
....+...+. ..+. .+.|+|++||+.+....||+++.+.+|++...
T Consensus 162 ~~~~i~~~l~~~~~~~-~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~ 209 (237)
T 2cbz_A 162 VGKHIFENVIGPKGML-KNKTRILVTHSMSYLPQVDVIIVMSGGKISEM 209 (237)
T ss_dssp HHHHHHHHTTSTTSTT-TTSEEEEECSCSTTGGGSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhhc-CCCEEEEEecChHHHHhCCEEEEEeCCEEEEe
Confidence 9999988543 2233 47899999999886668999999999988654
No 40
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.94 E-value=3.4e-26 Score=238.40 Aligned_cols=167 Identities=14% Similarity=0.162 Sum_probs=131.2
Q ss_pred CcEEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhhhc
Q 006974 325 SEMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG 381 (623)
Q Consensus 325 ~~l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~~G 381 (623)
+.++++||+++|+ +..+ ++||++.+| ++++|+||||||||||+|++ |++.+ +.+..
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~G-e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i 130 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPG-QTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTT-CEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCC-CEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence 4689999999995 4444 999999999 99999999999999999999 76643 12234
Q ss_pred eeecCCCCC-CccHHHH---------------HHHHcCCchhhh-----------cccccccHHHH-HHHHHHHhcCCCc
Q 006974 382 LYLPAKNHP-RLPWFDL---------------ILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVSRES 433 (623)
Q Consensus 382 ~~vp~~~~~-~l~~~d~---------------i~~~ig~~~~~~-----------~~~stfS~g~~-rl~~~~~l~~~~~ 433 (623)
.|+||.... ..++.++ ++...++.+.+. .....|||||+ |+++|++++.+|+
T Consensus 131 ~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~ 210 (306)
T 3nh6_A 131 GVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPG 210 (306)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCC
Confidence 588987521 1123333 233344444333 34579999999 8999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 434 LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
+|||||||+|||+.....+...+. .+.+ +.|+|++||+++....||+++++.+|++...
T Consensus 211 iLlLDEPts~LD~~~~~~i~~~l~-~l~~-~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~ 269 (306)
T 3nh6_A 211 IILLDEATSALDTSNERAIQASLA-KVCA-NRTTIVVAHRLSTVVNADQILVIKDGCIVER 269 (306)
T ss_dssp EEEEECCSSCCCHHHHHHHHHHHH-HHHT-TSEEEEECCSHHHHHTCSEEEEEETTEEEEE
T ss_pred EEEEECCcccCCHHHHHHHHHHHH-HHcC-CCEEEEEEcChHHHHcCCEEEEEECCEEEEE
Confidence 999999999999999999998554 4544 6899999999986666999999999998765
No 41
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.92 E-value=1.4e-25 Score=240.88 Aligned_cols=166 Identities=16% Similarity=0.134 Sum_probs=136.4
Q ss_pred CcEEEceeeeec--CCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh------------------hhhhc
Q 006974 325 SEMTVGSLSKGI--SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAG 381 (623)
Q Consensus 325 ~~l~~~~l~~~y--~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~------------------~a~~G 381 (623)
+.++++||+|+| ++..+ ++||++.+| ++++|+||||||||||||+| |+... +.+..
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~G-e~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~i 96 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPG-QRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAF 96 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTT-CEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTE
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCC-CEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCE
Confidence 469999999999 55554 999999999 99999999999999999999 66531 11234
Q ss_pred eeecCCCCCCc--cH--------------HHHHHHHcCCchhhhccccc-----------ccHHHH-HHHHHHHhcCCCc
Q 006974 382 LYLPAKNHPRL--PW--------------FDLILADIGDHQSLEQNLST-----------FSGHIS-RIVDILELVSRES 433 (623)
Q Consensus 382 ~~vp~~~~~~l--~~--------------~d~i~~~ig~~~~~~~~~st-----------fS~g~~-rl~~~~~l~~~~~ 433 (623)
.|+||+. ..+ ++ +..++..+++.+.+++.++. |||||+ |+++|++++.+|+
T Consensus 97 g~v~Q~~-~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~ 175 (390)
T 3gd7_A 97 GVIPQKV-FIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 175 (390)
T ss_dssp EEESCCC-CCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCC
T ss_pred EEEcCCc-ccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCC
Confidence 5788875 222 22 33456778888888888887 999999 8999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 434 LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
++||||||+|||+..+..+...+ ..+. .+.|+|++||+.+....||++..+.+|++...
T Consensus 176 lLLLDEPts~LD~~~~~~l~~~l-~~~~-~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~ 234 (390)
T 3gd7_A 176 ILLLDEPSAHLDPVTYQIIRRTL-KQAF-ADCTVILCEARIEAMLECDQFLVIEENKVRQY 234 (390)
T ss_dssp EEEEESHHHHSCHHHHHHHHHHH-HTTT-TTSCEEEECSSSGGGTTCSEEEEEETTEEEEE
T ss_pred EEEEeCCccCCCHHHHHHHHHHH-HHHh-CCCEEEEEEcCHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999988844 4333 47899999999887677999999999998764
No 42
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.91 E-value=9.8e-25 Score=226.04 Aligned_cols=167 Identities=15% Similarity=0.077 Sum_probs=116.9
Q ss_pred CcEEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------hhceeecCCCCC-CccHH
Q 006974 325 SEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------KAGLYLPAKNHP-RLPWF 395 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------~~G~~vp~~~~~-~l~~~ 395 (623)
+.++++||++.+ ...+ ++||++.+| ++++|+||||||||||||++ |++.+.+ ....|+|+.... ..++.
T Consensus 39 ~~l~~~~l~~~~-~~vl~~isl~i~~G-e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~ 116 (290)
T 2bbs_A 39 DSLSFSNFSLLG-TPVLKDINFKIERG-QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIK 116 (290)
T ss_dssp -----------C-CCSEEEEEEEECTT-CEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHH
T ss_pred ceEEEEEEEEcC-ceEEEeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHH
Confidence 357889999864 2233 999999999 99999999999999999999 7765421 112478886421 12344
Q ss_pred HHHH-------------HHcCCchhhhc-----------ccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHH
Q 006974 396 DLIL-------------ADIGDHQSLEQ-----------NLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGV 450 (623)
Q Consensus 396 d~i~-------------~~ig~~~~~~~-----------~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~ 450 (623)
+++. ...++.+.++. ..++|||||+ |+++|++++.+|+++||||||+|||+....
T Consensus 117 enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~ 196 (290)
T 2bbs_A 117 ENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 196 (290)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHH
T ss_pred HHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHH
Confidence 4432 22343333222 3479999999 899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 451 ALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 451 ~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
.+...++..+. .+.|+|++||+.+....|++++.+.+|++...
T Consensus 197 ~i~~~ll~~~~-~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~ 239 (290)
T 2bbs_A 197 EIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSYFY 239 (290)
T ss_dssp HHHHHCCCCCT-TTSEEEEECCCHHHHHHSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHhh-CCCEEEEEecCHHHHHcCCEEEEEECCeEEEe
Confidence 98874333333 37899999999986667999999999988654
No 43
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.91 E-value=2.8e-24 Score=240.38 Aligned_cols=163 Identities=21% Similarity=0.264 Sum_probs=130.3
Q ss_pred CcEEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------hhhceeecCCCCC--Ccc
Q 006974 325 SEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------SKAGLYLPAKNHP--RLP 393 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------a~~G~~vp~~~~~--~l~ 393 (623)
..++++|+++.|++..+ .+++++.+| ++++|+||||||||||+|+| |++.+. .+...|+|+.... ..+
T Consensus 268 ~~l~~~~l~~~~~~~~l~~~~~~i~~G-ei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~t 346 (538)
T 3ozx_A 268 TKMKWTKIIKKLGDFQLVVDNGEAKEG-EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGT 346 (538)
T ss_dssp EEEEECCEEEEETTEEEEECCEEEETT-CEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSB
T ss_pred ceEEEcceEEEECCEEEEeccceECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCC
Confidence 46889999999988555 678999999 99999999999999999999 766542 1222466765322 222
Q ss_pred HH------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHH
Q 006974 394 WF------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALAT 454 (623)
Q Consensus 394 ~~------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~ 454 (623)
+. +.++..+|+.+..++.+++|||||+ |+++|++++.+|++|||||||+|||+.....+..
T Consensus 347 v~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ 426 (538)
T 3ozx_A 347 VQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAK 426 (538)
T ss_dssp HHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred HHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 22 3344556677778899999999999 8999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEcCchh-HHhhccccceeeC
Q 006974 455 SILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (623)
Q Consensus 455 all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~ 488 (623)
.+.+...+.|.|+|++|||++ +..+||+++++.+
T Consensus 427 ~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~ 461 (538)
T 3ozx_A 427 AIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKG 461 (538)
T ss_dssp HHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 554443456889999999988 5568999988865
No 44
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.90 E-value=7.4e-24 Score=239.90 Aligned_cols=167 Identities=14% Similarity=0.154 Sum_probs=131.2
Q ss_pred CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh
Q 006974 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 380 (623)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~ 380 (623)
+.++++||+++|++ ..+ ++||++++| ++++|+||||||||||+|++ |+..+. .+.
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G-~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQG-KTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcC
Confidence 46999999999974 444 999999999 99999999999999999999 666431 122
Q ss_pred ceeecCCCCC-CccH----------------HHHHHHHcCCchhhhc-----------ccccccHHHH-HHHHHHHhcCC
Q 006974 381 GLYLPAKNHP-RLPW----------------FDLILADIGDHQSLEQ-----------NLSTFSGHIS-RIVDILELVSR 431 (623)
Q Consensus 381 G~~vp~~~~~-~l~~----------------~d~i~~~ig~~~~~~~-----------~~stfS~g~~-rl~~~~~l~~~ 431 (623)
-.|+||+... ..++ +++++...|+.+.+++ ..++|||||+ |+++|++++.+
T Consensus 419 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~ 498 (582)
T 3b5x_A 419 FALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRD 498 (582)
T ss_pred eEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcC
Confidence 3578886420 0111 2233444555544443 4589999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
|+++||||||+|+|+.....+.+.+ ..+.+ |.|+|++||+.+....||+++.+.+|++...
T Consensus 499 p~illlDEpts~LD~~~~~~i~~~l-~~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~ 559 (582)
T 3b5x_A 499 APVLILDEATSALDTESERAIQAAL-DELQK-NKTVLVIAHRLSTIEQADEILVVDEGEIIER 559 (582)
T ss_pred CCEEEEECccccCCHHHHHHHHHHH-HHHcC-CCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999998854 44554 8899999999986678999999999988654
No 45
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.90 E-value=6e-24 Score=238.09 Aligned_cols=163 Identities=21% Similarity=0.260 Sum_probs=130.6
Q ss_pred CcEEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------hhhceeecCCCCC--CccH
Q 006974 325 SEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------SKAGLYLPAKNHP--RLPW 394 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------a~~G~~vp~~~~~--~l~~ 394 (623)
.+++++|+++.|++..+ .++|++.+| ++++|+||||||||||||+| |++.+. .....|+|+.... .+++
T Consensus 286 ~~l~~~~l~~~~~~~~l~~~~~~i~~G-e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv 364 (538)
T 1yqt_A 286 TLVTYPRLVKDYGSFRLEVEPGEIKKG-EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTV 364 (538)
T ss_dssp EEEEECCEEEEETTEEEEECCEEEETT-CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBH
T ss_pred eEEEEeeEEEEECCEEEEeCccccCCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcH
Confidence 46889999999987544 788899999 99999999999999999999 776542 1223478886521 1222
Q ss_pred H-----------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 006974 395 F-----------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSI 456 (623)
Q Consensus 395 ~-----------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~al 456 (623)
. +.++..+|+.+..++.+++||||++ |+++|++++.+|++|||||||+|||+.....+...+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l 444 (538)
T 1yqt_A 365 YELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAI 444 (538)
T ss_dssp HHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred HHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 1 1234456777778899999999999 899999999999999999999999999999999955
Q ss_pred HHHHhcCCcEEEEEcCchh-HHhhccccceeeC
Q 006974 457 LQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (623)
Q Consensus 457 l~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~ 488 (623)
.+...+.|.|+|++|||.+ +..+||+++.+.+
T Consensus 445 ~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~ 477 (538)
T 1yqt_A 445 RHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEG 477 (538)
T ss_dssp HHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 4433356899999999988 5679999988875
No 46
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.90 E-value=9.9e-24 Score=239.00 Aligned_cols=163 Identities=21% Similarity=0.241 Sum_probs=131.9
Q ss_pred CcEEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------hhhceeecCCCCC--CccH
Q 006974 325 SEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------SKAGLYLPAKNHP--RLPW 394 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------a~~G~~vp~~~~~--~l~~ 394 (623)
..++++|+++.|++..+ .++|++.+| ++++|+||||||||||||++ |++.+. .....|+|+.... .+++
T Consensus 356 ~~l~~~~l~~~~~~~~l~~~~~~v~~G-ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv 434 (607)
T 3bk7_A 356 TLVEYPRLVKDYGSFKLEVEPGEIRKG-EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTV 434 (607)
T ss_dssp EEEEECCEEEECSSCEEEECCEEEETT-CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBH
T ss_pred eEEEEeceEEEecceEEEecccccCCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcH
Confidence 46889999999987544 788889999 99999999999999999999 776542 1223578886421 1221
Q ss_pred -----------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 006974 395 -----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSI 456 (623)
Q Consensus 395 -----------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~al 456 (623)
++.++..+|+.+..++.+++|||||+ |+++|++++.+|+++||||||+|||+.....+...+
T Consensus 435 ~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l 514 (607)
T 3bk7_A 435 YELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAI 514 (607)
T ss_dssp HHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred HHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 12345677888888999999999999 899999999999999999999999999999999955
Q ss_pred HHHHhcCCcEEEEEcCchh-HHhhccccceeeC
Q 006974 457 LQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (623)
Q Consensus 457 l~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~ 488 (623)
.+...+.|.|+|++|||.+ +..+||+++.+.+
T Consensus 515 ~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~ 547 (607)
T 3bk7_A 515 RHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG 547 (607)
T ss_dssp HHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 4433456899999999988 5568999988864
No 47
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.90 E-value=1.1e-23 Score=238.55 Aligned_cols=167 Identities=14% Similarity=0.154 Sum_probs=132.0
Q ss_pred CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh
Q 006974 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 380 (623)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~ 380 (623)
+.++++||+++|++ ..+ ++||++++| ++++|+||||||||||+|++ |+..+. .+.
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G-~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAG-KTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 418 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTT-CEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCC-CEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhh
Confidence 46999999999973 444 999999999 99999999999999999999 776431 123
Q ss_pred ceeecCCCCC-CccHHH----------------HHHHHcCCchhhhc-----------ccccccHHHH-HHHHHHHhcCC
Q 006974 381 GLYLPAKNHP-RLPWFD----------------LILADIGDHQSLEQ-----------NLSTFSGHIS-RIVDILELVSR 431 (623)
Q Consensus 381 G~~vp~~~~~-~l~~~d----------------~i~~~ig~~~~~~~-----------~~stfS~g~~-rl~~~~~l~~~ 431 (623)
..|+||+... ..++.+ +++...|+.+.+++ ...+|||||+ |+++|++++.+
T Consensus 419 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~ 498 (582)
T 3b60_A 419 VALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRD 498 (582)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred CeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhC
Confidence 4588887521 112222 23344455444433 4589999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
|+++||||||+|+|+.....+.+.+ ..+.+ |.|+|++||+.+....||++..+.+|++...
T Consensus 499 p~illlDEpts~LD~~~~~~i~~~l-~~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~ 559 (582)
T 3b60_A 499 SPILILDEATSALDTESERAIQAAL-DELQK-NRTSLVIAHRLSTIEQADEIVVVEDGIIVER 559 (582)
T ss_dssp CSEEEEETTTSSCCHHHHHHHHHHH-HHHHT-TSEEEEECSCGGGTTTCSEEEEEETTEEEEE
T ss_pred CCEEEEECccccCCHHHHHHHHHHH-HHHhC-CCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999854 44554 8899999999986678999999999998654
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.90 E-value=9.6e-24 Score=236.43 Aligned_cols=159 Identities=20% Similarity=0.185 Sum_probs=123.3
Q ss_pred EEE-ceeeeecCCcc-c--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-h------------h--------
Q 006974 327 MTV-GSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-K------------A-------- 380 (623)
Q Consensus 327 l~~-~~l~~~y~~~~-v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-~------------~-------- 380 (623)
.++ +||+++|++.. + ++| ++.+| ++++|+||||||||||||+| |++.+.. . .
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~G-e~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~ 98 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEG-MVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF 98 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTT-SEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHH
Confidence 344 58999998753 4 788 89999 99999999999999999999 6553210 0 0
Q ss_pred ---------ceeecCCCC--C---Ccc------------HHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCc
Q 006974 381 ---------GLYLPAKNH--P---RLP------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES 433 (623)
Q Consensus 381 ---------G~~vp~~~~--~---~l~------------~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~ 433 (623)
..++|+... . ... .++.++..+|+.+..++.+++|||||+ |+++|++++.+|+
T Consensus 99 ~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~ 178 (538)
T 1yqt_A 99 EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNAT 178 (538)
T ss_dssp HHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 113333210 0 001 134678889998889999999999999 8999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeC
Q 006974 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (623)
Q Consensus 434 LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~ 488 (623)
+|||||||+|||+.....+.. +++.+.+.|.|+|++||+++ +..+||+++.+.+
T Consensus 179 lLlLDEPTs~LD~~~~~~l~~-~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~ 233 (538)
T 1yqt_A 179 FYFFDEPSSYLDIRQRLNAAR-AIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYG 233 (538)
T ss_dssp EEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred EEEEECCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 999999999999999999999 55566667899999999988 5578999887754
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.90 E-value=2.1e-23 Score=236.37 Aligned_cols=156 Identities=21% Similarity=0.223 Sum_probs=123.8
Q ss_pred ceeeeecCCcc-c--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-h-------------------------
Q 006974 330 GSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-K------------------------- 379 (623)
Q Consensus 330 ~~l~~~y~~~~-v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-~------------------------- 379 (623)
+||+++|++.. + +++ .+.+| ++++|+||||||||||||+| |++.+.. .
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~G-e~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~ 172 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDG-MVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLK 172 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTT-SEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCC-CEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhh
Confidence 89999998753 4 788 89999 99999999999999999999 6653210 0
Q ss_pred ----hceeecCCCC---C--C------------ccHHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974 380 ----AGLYLPAKNH---P--R------------LPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (623)
Q Consensus 380 ----~G~~vp~~~~---~--~------------l~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLL 437 (623)
...++|+... . . ...++.++..+|+.+..++.+++|||||+ |+++|++++.+|++|||
T Consensus 173 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlL 252 (607)
T 3bk7_A 173 NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFF 252 (607)
T ss_dssp HTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred hhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 0113333210 0 0 01245678889999889999999999999 89999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeC
Q 006974 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (623)
Q Consensus 438 DEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~ 488 (623)
||||+|||+.....+.. +++.+.+.|.|+|++|||++ +..+||++..+.+
T Consensus 253 DEPTs~LD~~~~~~l~~-~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~ 303 (607)
T 3bk7_A 253 DEPSSYLDIRQRLKVAR-VIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYG 303 (607)
T ss_dssp ECTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEES
T ss_pred ECCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEecChHHHHhhCCEEEEECC
Confidence 99999999999999999 55666666899999999988 4568898877754
No 50
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.90 E-value=2.7e-23 Score=235.87 Aligned_cols=167 Identities=13% Similarity=0.122 Sum_probs=130.5
Q ss_pred Cc-EEEceeeeecCCc---cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------h
Q 006974 325 SE-MTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------S 378 (623)
Q Consensus 325 ~~-l~~~~l~~~y~~~---~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a 378 (623)
+. ++++||+++|++. .+ ++||++++| ++++|+||||||||||+|++ |+..+. .
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G-~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~ 417 (595)
T 2yl4_A 339 QGALEFKNVHFAYPARPEVPIFQDFSLSIPSG-SVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLR 417 (595)
T ss_dssp CCCEEEEEEEEECSSCTTSEEEEEEEEEECTT-CEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHH
T ss_pred CCeEEEEEEEEEeCCCCCCccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHH
Confidence 45 8999999999752 34 999999999 99999999999999999999 766431 1
Q ss_pred hhceeecCCCCC-CccHHH------------------HHHHHcCCchhhhc-----------ccccccHHHH-HHHHHHH
Q 006974 379 KAGLYLPAKNHP-RLPWFD------------------LILADIGDHQSLEQ-----------NLSTFSGHIS-RIVDILE 427 (623)
Q Consensus 379 ~~G~~vp~~~~~-~l~~~d------------------~i~~~ig~~~~~~~-----------~~stfS~g~~-rl~~~~~ 427 (623)
+...|+||+... ..++.+ +++...|+.+.+++ ..++|||||+ |+++|++
T Consensus 418 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAra 497 (595)
T 2yl4_A 418 SKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARA 497 (595)
T ss_dssp HSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHH
T ss_pred hceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHH
Confidence 223588887521 112222 33444555443322 2389999999 8999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
++.+|+++||||||+|||+.....+.+.+ ..+.+ +.|+|++||+.+....||+++.+.+|++...
T Consensus 498 l~~~p~illlDEpts~LD~~~~~~i~~~l-~~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~ 562 (595)
T 2yl4_A 498 LLKNPKILLLDEATSALDAENEYLVQEAL-DRLMD-GRTVLVIAHRLSTIKNANMVAVLDQGKITEY 562 (595)
T ss_dssp HHHCCSEEEEECCCSSCCHHHHHHHHHHH-HHHHT-TSEEEEECCCHHHHHHSSEEEEEETTEEEEE
T ss_pred HHcCCCEEEEECcccCCCHHHHHHHHHHH-HHHhc-CCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999998854 44555 7899999999986677999999999998754
No 51
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.90 E-value=2.1e-23 Score=236.90 Aligned_cols=167 Identities=11% Similarity=0.089 Sum_probs=130.7
Q ss_pred CcEEEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhc
Q 006974 325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 381 (623)
Q Consensus 325 ~~l~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G 381 (623)
+.++++||+++|++ ..+ ++||++++| ++++|+||||||||||+|++ |+..+. .+..
T Consensus 353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~G-~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i 431 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKKPVLKDITFHIKPG-QKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSI 431 (598)
T ss_dssp CCEEEEEEECCSSSSSCSCCSEEEECCTT-CEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred CeEEEEEEEEECCCCCccccceEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhce
Confidence 56999999999964 344 999999999 99999999999999999999 666431 1234
Q ss_pred eeecCCCCC-CccHHHHHH---------------HHcCCchhhhcc-----------cccccHHHH-HHHHHHHhcCCCc
Q 006974 382 LYLPAKNHP-RLPWFDLIL---------------ADIGDHQSLEQN-----------LSTFSGHIS-RIVDILELVSRES 433 (623)
Q Consensus 382 ~~vp~~~~~-~l~~~d~i~---------------~~ig~~~~~~~~-----------~stfS~g~~-rl~~~~~l~~~~~ 433 (623)
.|+||+... ..++.+++. ...+..+.++.. ..+|||||+ |+++|++++.+|+
T Consensus 432 ~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~ 511 (598)
T 3qf4_B 432 GIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPK 511 (598)
T ss_dssp EEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCS
T ss_pred EEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 588887521 123344432 222333333332 378999999 8999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 434 LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
++||||||+++|+.....+...+.+ +. +|.|+|++||+.+....||++..+++|++...
T Consensus 512 illlDEpts~LD~~~~~~i~~~l~~-~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~ 570 (598)
T 3qf4_B 512 ILILDEATSNVDTKTEKSIQAAMWK-LM-EGKTSIIIAHRLNTIKNADLIIVLRDGEIVEM 570 (598)
T ss_dssp EEEECCCCTTCCHHHHHHHHHHHHH-HH-TTSEEEEESCCTTHHHHCSEEEEECSSSEEEC
T ss_pred EEEEECCccCCCHHHHHHHHHHHHH-Hc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 9999999999999999999885544 54 47899999999987677999999999998754
No 52
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.89 E-value=4.3e-23 Score=233.71 Aligned_cols=166 Identities=16% Similarity=0.171 Sum_probs=131.4
Q ss_pred CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhhh
Q 006974 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (623)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~~ 380 (623)
+.++++||+++|++ ..+ ++||++++| ++++|+||||||||||+|++ |+..+ +.+.
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G-e~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 418 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPG-SLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGH 418 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTT-CEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHH
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhh
Confidence 56999999999953 344 999999999 99999999999999999999 66543 1223
Q ss_pred ceeecCCCCCCc--cHHHHH---------------HHHcCCch-----------hhhcccccccHHHH-HHHHHHHhcCC
Q 006974 381 GLYLPAKNHPRL--PWFDLI---------------LADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSR 431 (623)
Q Consensus 381 G~~vp~~~~~~l--~~~d~i---------------~~~ig~~~-----------~~~~~~stfS~g~~-rl~~~~~l~~~ 431 (623)
..|+||+.. .+ ++.+++ ....+..+ .+.....+|||||+ |+++|++++.+
T Consensus 419 i~~v~Q~~~-lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~ 497 (587)
T 3qf4_A 419 ISAVPQETV-LFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKK 497 (587)
T ss_dssp EEEECSSCC-CCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTC
T ss_pred eEEECCCCc-CcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcC
Confidence 458898752 11 222222 22223322 33456789999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
|+++||||||+++|+.....+...+. .+. ++.|+|++||+.+....||++..+++|++...
T Consensus 498 p~illlDEpts~LD~~~~~~i~~~l~-~~~-~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~ 558 (587)
T 3qf4_A 498 PKVLILDDCTSSVDPITEKRILDGLK-RYT-KGCTTFIITQKIPTALLADKILVLHEGKVAGF 558 (587)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHH-HHS-TTCEEEEEESCHHHHTTSSEEEEEETTEEEEE
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHH-HhC-CCCEEEEEecChHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999554 454 47899999999997779999999999998765
No 53
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.89 E-value=3.4e-23 Score=234.27 Aligned_cols=167 Identities=16% Similarity=0.176 Sum_probs=130.4
Q ss_pred CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh
Q 006974 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 380 (623)
Q Consensus 325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~ 380 (623)
+.++++||+++|++ ..+ ++||++++| ++++|+||||||||||+|++ |+..+. .+.
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G-~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~ 416 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKG-ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 416 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTT-CEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCC-CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 56999999999964 334 999999999 99999999999999999999 766431 123
Q ss_pred ceeecCCCCC-CccHHHHH---------------HHHcCCchhhh-----------cccccccHHHH-HHHHHHHhcCCC
Q 006974 381 GLYLPAKNHP-RLPWFDLI---------------LADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVSRE 432 (623)
Q Consensus 381 G~~vp~~~~~-~l~~~d~i---------------~~~ig~~~~~~-----------~~~stfS~g~~-rl~~~~~l~~~~ 432 (623)
..|+||+... ..++.+++ +...+..+.++ ....+|||||+ |+++|++++.+|
T Consensus 417 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p 496 (578)
T 4a82_A 417 IGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNP 496 (578)
T ss_dssp EEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCC
T ss_pred eEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCC
Confidence 4588887521 11233332 33344433333 34468999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
+++||||||+|+|+.....+... +..+.+ +.|+|++||+.+....||++..+.+|++...
T Consensus 497 ~illlDEpts~LD~~~~~~i~~~-l~~~~~-~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~ 556 (578)
T 4a82_A 497 PILILDEATSALDLESESIIQEA-LDVLSK-DRTTLIVAHRLSTITHADKIVVIENGHIVET 556 (578)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHH-HHHHTT-TSEEEEECSSGGGTTTCSEEEEEETTEEEEE
T ss_pred CEEEEECccccCCHHHHHHHHHH-HHHHcC-CCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999998888884 455543 6899999999986677999999999998765
No 54
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=9e-23 Score=230.89 Aligned_cols=155 Identities=17% Similarity=0.140 Sum_probs=118.1
Q ss_pred eeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhh---------------hc-----------
Q 006974 331 SLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK---------------AG----------- 381 (623)
Q Consensus 331 ~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~---------------~G----------- 381 (623)
|++++|+.... .....+.+| ++++|+||||||||||||+| |++.+..- .|
T Consensus 82 ~~~~~Y~~~~~~l~~l~~~~~G-ei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLPTPRPG-QVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160 (608)
T ss_dssp TEEEECSTTSCEEECCCCCCTT-SEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CeEEEECCCceeecCCCCCCCC-CEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence 45677765332 333357789 99999999999999999999 55532110 00
Q ss_pred ------eeecCCCCCCc-----------------------cHHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCC
Q 006974 382 ------LYLPAKNHPRL-----------------------PWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (623)
Q Consensus 382 ------~~vp~~~~~~l-----------------------~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~ 431 (623)
.+.|+.. ..+ ..++.++..+|+.+..++.+++|||||+ |+++|++++.+
T Consensus 161 ~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~ 239 (608)
T 3j16_B 161 EDDIKAIIKPQYV-DNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQE 239 (608)
T ss_dssp HTSCCCEEECCCT-TTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSC
T ss_pred HHhhhhhhchhhh-hhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhC
Confidence 0111110 000 1244567888999999999999999999 79999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeC
Q 006974 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (623)
Q Consensus 432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~ 488 (623)
|+++||||||+|||+.+...+.. +++.+.+.|.|+|++||+++ +..+||++..+.+
T Consensus 240 p~llllDEPts~LD~~~~~~l~~-~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~ 296 (608)
T 3j16_B 240 ADVYMFDEPSSYLDVKQRLNAAQ-IIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYG 296 (608)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHH-HHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEES
T ss_pred CCEEEEECcccCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 99999999999999999999998 66677777899999999987 6678998887754
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.88 E-value=1.8e-22 Score=236.85 Aligned_cols=162 Identities=15% Similarity=0.190 Sum_probs=129.8
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH--hhhh---hhhh-hceeecCCC---CCCccH
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL--GLAS---LMSK-AGLYLPAKN---HPRLPW 394 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i--gl~~---~~a~-~G~~vp~~~---~~~l~~ 394 (623)
.+...|++++|++..+ ++||++.+| ++++|+||||||||||||+| |.+. .... ...|+|+.. ...++.
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~G-e~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRA-RRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBH
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcH
Confidence 4666799999998766 999999999 99999999999999999999 3221 0000 113566542 112222
Q ss_pred --------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006974 395 --------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQ 458 (623)
Q Consensus 395 --------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~ 458 (623)
+..++..+|+. +..++++++|||||+ |+.++++++.+|++|||||||+|||+.....+...+.+
T Consensus 514 ~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~ 593 (986)
T 2iw3_A 514 LDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT 593 (986)
T ss_dssp HHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh
Confidence 33457788884 678999999999999 89999999999999999999999999999999884443
Q ss_pred HHhcCCcEEEEEcCchh-HHhhccccceeeCceEE
Q 006974 459 YLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (623)
Q Consensus 459 ~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~ 492 (623)
.|.|+|++||+.+ +..+|++++.+.+|++.
T Consensus 594 ----~g~tvIivSHdl~~l~~~adrii~L~~G~iv 624 (986)
T 2iw3_A 594 ----CGITSITISHDSVFLDNVCEYIINYEGLKLR 624 (986)
T ss_dssp ----SCSEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred ----CCCEEEEEECCHHHHHHhCCEEEEEECCeee
Confidence 4889999999988 56799999999999985
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.88 E-value=4.1e-23 Score=242.25 Aligned_cols=94 Identities=17% Similarity=0.182 Sum_probs=79.7
Q ss_pred HHHHHHcCCchh--hhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcC
Q 006974 396 DLILADIGDHQS--LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTH 472 (623)
Q Consensus 396 d~i~~~ig~~~~--~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH 472 (623)
++++..+|+... .++.+++|||||+ |++++++++.+|++|||||||+|||+.....+...+ .+.++++|++||
T Consensus 881 ~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L----~~~g~tVIiISH 956 (986)
T 2iw3_A 881 EEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKAL----KEFEGGVIIITH 956 (986)
T ss_dssp HHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHH----HSCSSEEEEECS
T ss_pred HHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHH----HHhCCEEEEEEC
Confidence 456778888653 5789999999999 899999999999999999999999999988777643 444779999999
Q ss_pred chhH-HhhccccceeeCceEEE
Q 006974 473 YADL-SCLKDKDTRFENAATEF 493 (623)
Q Consensus 473 ~~~l-~~~~~~~~~i~~g~~~~ 493 (623)
+.++ ..+|++++.+.+|++..
T Consensus 957 D~e~v~~l~DrVivL~~G~Iv~ 978 (986)
T 2iw3_A 957 SAEFTKNLTEEVWAVKDGRMTP 978 (986)
T ss_dssp CHHHHTTTCCEEECCBTTBCCC
T ss_pred CHHHHHHhCCEEEEEECCEEEE
Confidence 9884 57999999999998754
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.5e-22 Score=229.15 Aligned_cols=164 Identities=21% Similarity=0.230 Sum_probs=124.1
Q ss_pred ceeeeecCCc--cc-cccccccCCc----eEEEEEcCCCCCHHHHHHHH-hhhhhhhh------hceeecCCCCCCc--c
Q 006974 330 GSLSKGISDF--PV-PIDIKVECET----RVVVITGPNTGGKTASMKTL-GLASLMSK------AGLYLPAKNHPRL--P 393 (623)
Q Consensus 330 ~~l~~~y~~~--~v-~i~l~l~~g~----~~~~I~GpNgsGKSTlLk~i-gl~~~~a~------~G~~vp~~~~~~l--~ 393 (623)
.++++.|++. .+ +++|++.+|. ++++|+||||||||||||+| |++.+.+. ...|+|+.....+ +
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~t 429 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGT 429 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSB
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCcc
Confidence 3455666542 22 7788877761 67999999999999999999 77665321 1246776532111 1
Q ss_pred H-----------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHH
Q 006974 394 W-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATS 455 (623)
Q Consensus 394 ~-----------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~a 455 (623)
+ .+.++..+|+.+..++.+++|||||+ |+++|++++.+|++|||||||+|||+.....+...
T Consensus 430 v~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~l 509 (608)
T 3j16_B 430 VRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKV 509 (608)
T ss_dssp HHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 2 23456667777788999999999999 89999999999999999999999999999999995
Q ss_pred HHHHHhcCCcEEEEEcCchh-HHhhccccceeeC--ceEEE
Q 006974 456 ILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN--AATEF 493 (623)
Q Consensus 456 ll~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~--g~~~~ 493 (623)
+.+...+.|.|+|++|||++ +..+||+++.+.+ |.+..
T Consensus 510 l~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~ 550 (608)
T 3j16_B 510 IRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAH 550 (608)
T ss_dssp HHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEE
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEe
Confidence 54444456899999999988 5578999988875 45443
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.86 E-value=1.1e-21 Score=219.44 Aligned_cols=155 Identities=15% Similarity=0.069 Sum_probs=114.8
Q ss_pred eeeeecCCccc-ccccccc-CCceEEEEEcCCCCCHHHHHHHH-hhhhhhhh----------------------------
Q 006974 331 SLSKGISDFPV-PIDIKVE-CETRVVVITGPNTGGKTASMKTL-GLASLMSK---------------------------- 379 (623)
Q Consensus 331 ~l~~~y~~~~v-~i~l~l~-~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~---------------------------- 379 (623)
+++.+||.+.. -..+.+. +| ++++|+||||||||||||+| |++.+...
T Consensus 4 ~~~~~~~~~~f~l~~l~~~~~G-ei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~ 82 (538)
T 3ozx_A 4 EVIHRYKVNGFKLFGLPTPKNN-TILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELY 82 (538)
T ss_dssp CEEEESSTTSCEEECCCCCCTT-EEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHH
T ss_pred CCceecCCCceeecCCCCCCCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHh
Confidence 45677764332 3344443 67 99999999999999999999 65432100
Q ss_pred ---hc-eeecCCCC-----CCcc------------HHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974 380 ---AG-LYLPAKNH-----PRLP------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (623)
Q Consensus 380 ---~G-~~vp~~~~-----~~l~------------~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLL 437 (623)
.+ ...++... .... ..+.++..+|+....++.+++|||||+ |+++|++++.+|+++||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illl 162 (538)
T 3ozx_A 83 SNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIF 162 (538)
T ss_dssp TTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred hcccchhhccchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 00 00111000 0000 134677888999999999999999999 79999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeC
Q 006974 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (623)
Q Consensus 438 DEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~ 488 (623)
||||+|||+.+...+.. +++.+.+ |.|+|++||+++ +..+||++..+.+
T Consensus 163 DEPts~LD~~~~~~l~~-~l~~l~~-g~tii~vsHdl~~~~~~~d~i~vl~~ 212 (538)
T 3ozx_A 163 DQPSSYLDVRERMNMAK-AIRELLK-NKYVIVVDHDLIVLDYLTDLIHIIYG 212 (538)
T ss_dssp ESTTTTCCHHHHHHHHH-HHHHHCT-TSEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred ECCcccCCHHHHHHHHH-HHHHHhC-CCEEEEEEeChHHHHhhCCEEEEecC
Confidence 99999999999999998 6666766 899999999987 5678888777654
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.85 E-value=3.4e-21 Score=221.62 Aligned_cols=95 Identities=23% Similarity=0.231 Sum_probs=81.8
Q ss_pred HHHcCCchh-hhcccccccHHHH-HHHHHHHhcCCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCch
Q 006974 399 LADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRES--LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (623)
Q Consensus 399 ~~~ig~~~~-~~~~~stfS~g~~-rl~~~~~l~~~~~--LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~ 474 (623)
+..+|+.+. .++.+++|||||+ |+++|++++.+|+ +|||||||+||||.....+.. ++..+++.|.|+|++|||+
T Consensus 186 l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~-~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 186 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIA-TLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp HHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHH-HHHHHHHTTCEEEEECCCH
T ss_pred HHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCH
Confidence 455666543 5789999999999 8999999999988 999999999999999999999 6666777789999999999
Q ss_pred hHHhhcccccee------eCceEEEe
Q 006974 475 DLSCLKDKDTRF------ENAATEFS 494 (623)
Q Consensus 475 ~l~~~~~~~~~i------~~g~~~~~ 494 (623)
++...||+++.+ .+|++.+.
T Consensus 265 ~~~~~~d~ii~l~~g~~~~~G~i~~~ 290 (670)
T 3ux8_A 265 DTMLAADYLIDIGPGAGIHGGEVVAA 290 (670)
T ss_dssp HHHHHCSEEEEECSSSGGGCCSEEEE
T ss_pred HHHhhCCEEEEecccccccCCEEEEe
Confidence 977789999888 67777653
No 60
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.84 E-value=1.2e-20 Score=230.73 Aligned_cols=168 Identities=14% Similarity=0.144 Sum_probs=130.0
Q ss_pred CCcEEEceeeeecCCc---cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hh
Q 006974 324 NSEMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MS 378 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~~---~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a 378 (623)
.+.++++||+++|++. ++ ++||++.+| ++++|+||||||||||++++ |+..+ +.
T Consensus 1028 ~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~G-e~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 1106 (1284)
T 3g5u_A 1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKG-QTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLR 1106 (1284)
T ss_dssp SCCEEEEEEEBCCSCGGGCCSBSSCCEEECSS-SEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHT
T ss_pred CCcEEEEEEEEECCCCCCCeeecceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHH
Confidence 3579999999999753 34 999999999 99999999999999999999 66543 11
Q ss_pred hhceeecCCCCC-CccHHHH-----------------HHHHcCCchhhh-----------cccccccHHHH-HHHHHHHh
Q 006974 379 KAGLYLPAKNHP-RLPWFDL-----------------ILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILEL 428 (623)
Q Consensus 379 ~~G~~vp~~~~~-~l~~~d~-----------------i~~~ig~~~~~~-----------~~~stfS~g~~-rl~~~~~l 428 (623)
+...|+||+... ..++.++ .....+..+.+. .+.+.||||++ |+++|+++
T Consensus 1107 ~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal 1186 (1284)
T 3g5u_A 1107 AQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARAL 1186 (1284)
T ss_dssp TSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHH
T ss_pred hceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHH
Confidence 234588887521 1122222 233334433332 23468999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
+.+|++|||||||+|+|+.....+..++ +.+ ..|+|+|++||+++....||++.++.+|++...
T Consensus 1187 ~~~p~iLiLDEpTs~lD~~~~~~i~~~l-~~~-~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~ 1250 (1284)
T 3g5u_A 1187 VRQPHILLLDEATSALDTESEKVVQEAL-DKA-REGRTCIVIAHRLSTIQNADLIVVIQNGKVKEH 1250 (1284)
T ss_dssp HHCCSSEEEESCSSSCCHHHHHHHHHHH-HHH-SSSSCEEEECSCTTGGGSCSEEEEEETBEEEEE
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHH-HHh-CCCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 9999999999999999999999998855 444 347899999999986677999999999998754
No 61
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.82 E-value=3.1e-20 Score=227.00 Aligned_cols=166 Identities=15% Similarity=0.170 Sum_probs=127.2
Q ss_pred CcEEEceeeeecCCc---cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hh
Q 006974 325 SEMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SK 379 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~---~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~ 379 (623)
+.++++||+++|++. ++ ++||++++| ++++|+||||||||||++++ |+..+. .+
T Consensus 386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G-~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~ 464 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSG-QTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE 464 (1284)
T ss_dssp CCEEEEEEEECCSSTTSCCSEEEEEEEECTT-CEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CeEEEEEEEEEcCCCCCCcceecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHh
Confidence 569999999999742 34 999999999 99999999999999999999 665431 12
Q ss_pred hceeecCCCCC-CccHHHHH---------------HHHcCCchh-----------hhcccccccHHHH-HHHHHHHhcCC
Q 006974 380 AGLYLPAKNHP-RLPWFDLI---------------LADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSR 431 (623)
Q Consensus 380 ~G~~vp~~~~~-~l~~~d~i---------------~~~ig~~~~-----------~~~~~stfS~g~~-rl~~~~~l~~~ 431 (623)
...+|||+... .-++.+++ ....+..+. +.....+|||||+ |+++|++++.+
T Consensus 465 ~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~ 544 (1284)
T 3g5u_A 465 IIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRN 544 (1284)
T ss_dssp HEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHC
T ss_pred heEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcC
Confidence 24588987521 11233333 222233222 2345568999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEE
Q 006974 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (623)
Q Consensus 432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~ 493 (623)
|+++||||||++||+.....+..+ ++.+. +|+|+|++||+++....||++.++.+|++..
T Consensus 545 p~iliLDEpts~LD~~~~~~i~~~-l~~~~-~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~ 604 (1284)
T 3g5u_A 545 PKILLLDEATSALDTESEAVVQAA-LDKAR-EGRTTIVIAHRLSTVRNADVIAGFDGGVIVE 604 (1284)
T ss_dssp CSEEEEESTTCSSCHHHHHHHHHH-HHHHH-TTSEEEEECSCHHHHTTCSEEEECSSSCCCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHH-HHHHc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 999999999999999988877774 44444 4789999999998666799999999998754
No 62
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.81 E-value=8.2e-20 Score=210.08 Aligned_cols=95 Identities=25% Similarity=0.242 Sum_probs=80.8
Q ss_pred HHHcCCch-hhhcccccccHHHH-HHHHHHHhcCCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974 399 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRE---SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (623)
Q Consensus 399 ~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~~~---~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~ 473 (623)
+..+|+.. ..++.+++|||||+ |+++|++++.+| ++|||||||+||||.....+.. ++..+.+.|.|+|++|||
T Consensus 527 l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~-~l~~l~~~g~tvi~vtHd 605 (670)
T 3ux8_A 527 LYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLD-VLHRLVDNGDTVLVIEHN 605 (670)
T ss_dssp HHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECCC
T ss_pred HHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCC
Confidence 44556543 45788999999999 899999998776 5999999999999999999999 566677778999999999
Q ss_pred hhHHhhcccccee------eCceEEEe
Q 006974 474 ADLSCLKDKDTRF------ENAATEFS 494 (623)
Q Consensus 474 ~~l~~~~~~~~~i------~~g~~~~~ 494 (623)
+++...||+++.+ .+|++..+
T Consensus 606 ~~~~~~~d~i~~l~~~~g~~~G~i~~~ 632 (670)
T 3ux8_A 606 LDVIKTADYIIDLGPEGGDRGGQIVAV 632 (670)
T ss_dssp HHHHTTCSEEEEEESSSGGGCCEEEEE
T ss_pred HHHHHhCCEEEEecCCcCCCCCEEEEe
Confidence 9977889999999 78888765
No 63
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.80 E-value=1.2e-19 Score=222.43 Aligned_cols=167 Identities=14% Similarity=0.162 Sum_probs=130.3
Q ss_pred CCcEEEceeeeecCC---ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hh
Q 006974 324 NSEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MS 378 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~---~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a 378 (623)
++.++++||+|+|++ .++ ++||++++| +.++|+||+|||||||++++ |+..+ +.
T Consensus 413 ~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G-~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr 491 (1321)
T 4f4c_A 413 KGDITVENVHFTYPSRPDVPILRGMNLRVNAG-QTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLR 491 (1321)
T ss_dssp CCCEEEEEEEECCSSSTTSCSEEEEEEEECTT-CEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHH
T ss_pred CCcEEEEEeeeeCCCCCCCceeeceEEeecCC-cEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHh
Confidence 357999999999963 344 999999999 99999999999999999999 65532 12
Q ss_pred hhceeecCCCCCCc--cHHHH---------------HHHHcCCchhhh-----------cccccccHHHH-HHHHHHHhc
Q 006974 379 KAGLYLPAKNHPRL--PWFDL---------------ILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELV 429 (623)
Q Consensus 379 ~~G~~vp~~~~~~l--~~~d~---------------i~~~ig~~~~~~-----------~~~stfS~g~~-rl~~~~~l~ 429 (623)
+...||||+.. .+ ++.++ .....++.+.+. ..-..||||+| |+++|+++.
T Consensus 492 ~~i~~v~Q~~~-Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~ 570 (1321)
T 4f4c_A 492 KNVAVVSQEPA-LFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALV 570 (1321)
T ss_dssp HHEEEECSSCC-CCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHT
T ss_pred hcccccCCcce-eeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHc
Confidence 23458898862 21 12222 233334433332 34578999999 899999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
.+|+++||||||+++|+.....+..++.+ +.+ +.|+|++||.......||+++++++|++...
T Consensus 571 ~~~~IliLDE~tSaLD~~te~~i~~~l~~-~~~-~~T~iiiaHrls~i~~aD~Iivl~~G~ive~ 633 (1321)
T 4f4c_A 571 RNPKILLLDEATSALDAESEGIVQQALDK-AAK-GRTTIIIAHRLSTIRNADLIISCKNGQVVEV 633 (1321)
T ss_dssp TCCSEEEEESTTTTSCTTTHHHHHHHHHH-HHT-TSEEEEECSCTTTTTTCSEEEEEETTEEEEE
T ss_pred cCCCEEEEecccccCCHHHHHHHHHHHHH-HhC-CCEEEEEcccHHHHHhCCEEEEeeCCeeecc
Confidence 99999999999999999987777775544 443 7899999999998889999999999998764
No 64
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.79 E-value=1e-19 Score=223.01 Aligned_cols=167 Identities=14% Similarity=0.132 Sum_probs=129.4
Q ss_pred CCcEEEceeeeecCCc---cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hh
Q 006974 324 NSEMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MS 378 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~~---~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a 378 (623)
.|.++++||+++|++. +| ++||++++| +.++|+||+||||||+++++ ++..+ +.
T Consensus 1074 ~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~G-e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR 1152 (1321)
T 4f4c_A 1074 YGKVIFKNVRFAYPERPEIEILKGLSFSVEPG-QTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTR 1152 (1321)
T ss_dssp CCCEEEEEEEECCTTSCSSCSEEEEEEEECTT-CEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHH
T ss_pred CCeEEEEEEEEeCCCCCCCccccceeEEECCC-CEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHH
Confidence 4679999999999642 35 999999999 99999999999999999999 55532 12
Q ss_pred hhceeecCCCCCCcc--H-----------------HHHHHHHcCCchhhh-----------cccccccHHHH-HHHHHHH
Q 006974 379 KAGLYLPAKNHPRLP--W-----------------FDLILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILE 427 (623)
Q Consensus 379 ~~G~~vp~~~~~~l~--~-----------------~d~i~~~ig~~~~~~-----------~~~stfS~g~~-rl~~~~~ 427 (623)
+.-.+|||++. .++ + +.+.+...++.+.+. .+-+.|||||| |+++|++
T Consensus 1153 ~~i~~V~Qdp~-LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARA 1231 (1321)
T 4f4c_A 1153 SQIAIVSQEPT-LFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARA 1231 (1321)
T ss_dssp TTEEEECSSCC-CCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHH
T ss_pred hheEEECCCCE-eeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHH
Confidence 23458898862 111 1 223344445544332 23467999999 8999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
++.+|++|||||||+++|+..-..+.+++.+ +. +++|+|++||.+.....||++.++++|++...
T Consensus 1232 llr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~-~~-~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~ 1296 (1321)
T 4f4c_A 1232 LVRNPKILLLDEATSALDTESEKVVQEALDR-AR-EGRTCIVIAHRLNTVMNADCIAVVSNGTIIEK 1296 (1321)
T ss_dssp HHSCCSEEEEESCCCSTTSHHHHHHHHHHTT-TS-SSSEEEEECSSSSTTTTCSEEEEESSSSEEEE
T ss_pred HHhCCCEEEEeCccccCCHHHHHHHHHHHHH-Hc-CCCEEEEeccCHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999998887775433 22 37899999999987778999999999998654
No 65
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.79 E-value=4.6e-19 Score=206.66 Aligned_cols=97 Identities=25% Similarity=0.227 Sum_probs=83.4
Q ss_pred HHHHHcCCch-hhhcccccccHHHH-HHHHHHHhcCC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEc
Q 006974 397 LILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR---ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTT 471 (623)
Q Consensus 397 ~i~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~~---~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~T 471 (623)
+++..+|+.. .+++.+++|||||+ |+++|++++.+ |+++||||||+|||+.....|.. ++..+.+.|.|||++|
T Consensus 827 ~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~-lL~~L~~~G~TVIvis 905 (972)
T 2r6f_A 827 ETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLD-VLHRLVDNGDTVLVIE 905 (972)
T ss_dssp HHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEEC
T ss_pred HHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEc
Confidence 4566778776 67899999999999 79999999875 59999999999999999999999 5666777799999999
Q ss_pred CchhHHhhcccccee------eCceEEEe
Q 006974 472 HYADLSCLKDKDTRF------ENAATEFS 494 (623)
Q Consensus 472 H~~~l~~~~~~~~~i------~~g~~~~~ 494 (623)
|++++...||+++.+ .+|++...
T Consensus 906 Hdl~~i~~aDrIivL~p~gG~~~G~Iv~~ 934 (972)
T 2r6f_A 906 HNLDVIKTADYIIDLGPEGGDRGGQIVAV 934 (972)
T ss_dssp CCHHHHTTCSEEEEECSSSTTSCCSEEEE
T ss_pred CCHHHHHhCCEEEEEcCCCCCCCCEEEEe
Confidence 999977789999998 56777654
No 66
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.79 E-value=5.2e-19 Score=205.71 Aligned_cols=97 Identities=21% Similarity=0.185 Sum_probs=83.1
Q ss_pred HHHHHcCCch-hhhcccccccHHHH-HHHHHHHhcCC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEc
Q 006974 397 LILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR---ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTT 471 (623)
Q Consensus 397 ~i~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~~---~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~T 471 (623)
+++..+|+.. .+++.+++||||++ |+++|++++.+ |+|+||||||+|||+.+...|.. ++..+.+.|.|||++|
T Consensus 712 ~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~-lL~~L~~~G~tVIvis 790 (842)
T 2vf7_A 712 DTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQR-QLVKLVDAGNTVIAVE 790 (842)
T ss_dssp HHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEEC
T ss_pred HHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEc
Confidence 3456677765 46889999999999 79999999885 79999999999999999999999 5666777899999999
Q ss_pred CchhHHhhcccccee------eCceEEEe
Q 006974 472 HYADLSCLKDKDTRF------ENAATEFS 494 (623)
Q Consensus 472 H~~~l~~~~~~~~~i------~~g~~~~~ 494 (623)
|++++...||+++.+ .+|++.+.
T Consensus 791 Hdl~~i~~aDrii~L~p~~g~~~G~Iv~~ 819 (842)
T 2vf7_A 791 HKMQVVAASDWVLDIGPGAGEDGGRLVAQ 819 (842)
T ss_dssp CCHHHHTTCSEEEEECSSSGGGCCSEEEE
T ss_pred CCHHHHHhCCEEEEECCCCCCCCCEEEEE
Confidence 999866889999999 57887654
No 67
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.78 E-value=8.5e-19 Score=205.09 Aligned_cols=97 Identities=23% Similarity=0.214 Sum_probs=83.4
Q ss_pred HHHHHcCCch-hhhcccccccHHHH-HHHHHHHhcCC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEc
Q 006974 397 LILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR---ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTT 471 (623)
Q Consensus 397 ~i~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~~---~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~T 471 (623)
+++..+|+.. .+++.+++|||||+ |+++|++++.+ |+++||||||+|||+.....|.. ++..+.+.|.|||++|
T Consensus 845 ~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~-lL~~L~~~G~TVIvis 923 (993)
T 2ygr_A 845 RTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLN-VINGLVDKGNTVIVIE 923 (993)
T ss_dssp HHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEEC
T ss_pred HHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEc
Confidence 4566777776 67899999999999 89999999875 59999999999999999999999 5666777799999999
Q ss_pred CchhHHhhcccccee------eCceEEEe
Q 006974 472 HYADLSCLKDKDTRF------ENAATEFS 494 (623)
Q Consensus 472 H~~~l~~~~~~~~~i------~~g~~~~~ 494 (623)
|++++...||+++.+ .+|.+.+.
T Consensus 924 Hdl~~i~~aDrIivL~p~gg~~~G~Iv~~ 952 (993)
T 2ygr_A 924 HNLDVIKTSDWIIDLGPEGGAGGGTVVAQ 952 (993)
T ss_dssp CCHHHHTTCSEEEEEESSSTTSCSEEEEE
T ss_pred CCHHHHHhCCEEEEECCCcCCCCCEEEEe
Confidence 999977789999999 57777654
No 68
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.77 E-value=1e-19 Score=173.67 Aligned_cols=133 Identities=11% Similarity=0.063 Sum_probs=89.6
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH--hhhhhh--hhhceeecCCCC-CCccH--HHHH------HHHcCCchhh
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL--GLASLM--SKAGLYLPAKNH-PRLPW--FDLI------LADIGDHQSL 408 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i--gl~~~~--a~~G~~vp~~~~-~~l~~--~d~i------~~~ig~~~~~ 408 (623)
++||++++| ++++|+||||||||||+|++ |...+- .-.| ++++... ..+.. ++.+ ....|.....
T Consensus 1 ~vsl~i~~g-ei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 78 (171)
T 4gp7_A 1 SMKLTIPEL-SLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRG-LMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVV 78 (171)
T ss_dssp CEEEEEESS-EEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHH-HHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CccccCCCC-EEEEEECCCCCCHHHHHHHHccCCeEEccHHHHH-HhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 468899999 99999999999999999965 211110 0133 3344321 11111 1111 1223332222
Q ss_pred hcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHH----------------HHHHHHHHHHHHHhcCCcEEEEEc
Q 006974 409 EQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS----------------EGVALATSILQYLRDRVGLAVVTT 471 (623)
Q Consensus 409 ~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~----------------~~~~l~~all~~l~~~~~~vii~T 471 (623)
......|+|++ ++++|++++.+|.+++|||||+|+|+. ....+.. ++..+.+.|.|+|++|
T Consensus 79 -~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~-~l~~l~~~g~tvi~vt 156 (171)
T 4gp7_A 79 -DATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKK-SIKGLQREGFRYVYIL 156 (171)
T ss_dssp -ESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHH-HSTTHHHHTCSEEEEE
T ss_pred -ECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhh-hhhhHHhcCCcEEEEe
Confidence 23345588888 799999999999999999999999999 5566666 4455665689999999
Q ss_pred CchhHHh
Q 006974 472 HYADLSC 478 (623)
Q Consensus 472 H~~~l~~ 478 (623)
|+++...
T Consensus 157 H~~~~~~ 163 (171)
T 4gp7_A 157 NSPEEVE 163 (171)
T ss_dssp CSHHHHH
T ss_pred CCHHHhh
Confidence 9988554
No 69
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.77 E-value=1.8e-18 Score=187.26 Aligned_cols=108 Identities=24% Similarity=0.330 Sum_probs=82.2
Q ss_pred ccHHHH-HHHHHHHhcCCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcccccee----e
Q 006974 415 FSGHIS-RIVDILELVSRE--SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF----E 487 (623)
Q Consensus 415 fS~g~~-rl~~~~~l~~~~--~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i----~ 487 (623)
+|||++ |+.++++++.+| ++|||||||+|||+.....|.. ++..+. ++++||+|||+.++..+|++++.+ .
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~-~L~~l~-~~~~vi~itH~~~~~~~~d~i~~l~k~~~ 373 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAE-QLSRLA-DTRQVLVVTHLAQIAARAHHHYKVEKQVE 373 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHH-HHHHHT-TTSEEEEECSCHHHHTTCSEEEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHh-CCCEEEEEeCcHHHHhhcCeEEEEEEecc
Confidence 599999 799999999999 9999999999999999999999 455566 488999999999988899999999 8
Q ss_pred CceEEEecCccccccccccCCCCCcHHHHHHHHC-C-CCHHHHHHHHHH
Q 006974 488 NAATEFSLETLRPTYRILWGSTGDSNALNIAKSI-G-FDRKIIQRAQKL 534 (623)
Q Consensus 488 ~g~~~~~~~~l~~~y~l~~g~~~~s~a~~ia~~~-g-~~~~i~~~a~~~ 534 (623)
+|++......+. ......++|+++ | +.+..+..|++.
T Consensus 374 ~G~~~~~~~~l~----------~~~~~~ei~~~~~g~~~~~~~~~a~~~ 412 (415)
T 4aby_A 374 DGRTVSHVRLLT----------GDERLEEIARMLSGNTSEAALEHAREL 412 (415)
T ss_dssp TTEEEEEEEECC----------SHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred CCceEEEEEECC----------chhhHHHHHHHhcCCCCHHHHHHHHHH
Confidence 887654422111 112234566655 3 455555566554
No 70
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.77 E-value=2.6e-18 Score=183.63 Aligned_cols=83 Identities=24% Similarity=0.203 Sum_probs=74.2
Q ss_pred hcccccccHHHH-HHHHHHHhc------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcc
Q 006974 409 EQNLSTFSGHIS-RIVDILELV------SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKD 481 (623)
Q Consensus 409 ~~~~stfS~g~~-rl~~~~~l~------~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~ 481 (623)
++++++|||||+ |++++++++ .+|+++||||||+||||.....+.. ++..+.+.|.|+|++||++++...|+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~-~l~~l~~~g~tvi~itH~~~~~~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIAS-VLKELERLNKVIVFITHDREFSEAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHH-HHHGGGGSSSEEEEEESCHHHHTTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHhCCCEEEEEecchHHHHhCC
Confidence 467889999999 788888877 7999999999999999999999998 66667777899999999999888899
Q ss_pred ccceeeCceEE
Q 006974 482 KDTRFENAATE 492 (623)
Q Consensus 482 ~~~~i~~g~~~ 492 (623)
+++.+.+|++.
T Consensus 353 ~~~~l~~G~i~ 363 (365)
T 3qf7_A 353 RKLRITGGVVV 363 (365)
T ss_dssp CEEEEETTEEC
T ss_pred EEEEEECCEEE
Confidence 99999999864
No 71
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.76 E-value=3.2e-18 Score=200.64 Aligned_cols=97 Identities=28% Similarity=0.271 Sum_probs=82.0
Q ss_pred HHHHHcCCch-hhhcccccccHHHH-HHHHHHHhcCC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEc
Q 006974 397 LILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR---ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTT 471 (623)
Q Consensus 397 ~i~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~~---~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~T 471 (623)
+++..+|+.. .+.+++++|||||+ |+++|++++.+ |+|+||||||+|||+.+...|.. ++..+.+.|.|||++|
T Consensus 787 ~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~-lL~~L~~~G~TVIvI~ 865 (916)
T 3pih_A 787 QVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVE-VLHRLVDRGNTVIVIE 865 (916)
T ss_dssp HHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEEC
T ss_pred HHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEe
Confidence 3455667654 35788999999999 89999999865 47999999999999999999999 5666777899999999
Q ss_pred CchhHHhhcccccee------eCceEEEe
Q 006974 472 HYADLSCLKDKDTRF------ENAATEFS 494 (623)
Q Consensus 472 H~~~l~~~~~~~~~i------~~g~~~~~ 494 (623)
|++++...||+++.+ .+|++.+.
T Consensus 866 HdL~~i~~ADrIivLgp~gg~~~G~Iv~~ 894 (916)
T 3pih_A 866 HNLDVIKNADHIIDLGPEGGKEGGYIVAT 894 (916)
T ss_dssp CCHHHHTTCSEEEEEESSSGGGCCEEEEE
T ss_pred CCHHHHHhCCEEEEecCCCCCCCCEEEEE
Confidence 999977779999999 67888765
No 72
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.3e-19 Score=198.88 Aligned_cols=156 Identities=14% Similarity=0.013 Sum_probs=112.2
Q ss_pred CcEEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhh-h-----------ceeecCCCC--
Q 006974 325 SEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK-A-----------GLYLPAKNH-- 389 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~-~-----------G~~vp~~~~-- 389 (623)
.+++++||++.|+ +++|++.+| ++++|+||||||||||+|+| |++.+... . ..++|+...
T Consensus 117 ~mi~~~nl~~~y~----~vsl~i~~G-e~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~ 191 (460)
T 2npi_A 117 TMKYIYNLHFMLE----KIRMSNFEG-PRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISAT 191 (460)
T ss_dssp THHHHHHHHHHHH----HHHHHSSSC-CCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEE
T ss_pred chhhhhhhhehhh----cCceEeCCC-CEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhc
Confidence 3577889999996 588899999 99999999999999999999 77655422 1 124555421
Q ss_pred ---CCccHHHHH------------------HHHcCCchhhhcccccccHHHH-HHHHHHH--hcCCCcE----EEEeC-C
Q 006974 390 ---PRLPWFDLI------------------LADIGDHQSLEQNLSTFSGHIS-RIVDILE--LVSRESL----VLIDE-I 440 (623)
Q Consensus 390 ---~~l~~~d~i------------------~~~ig~~~~~~~~~stfS~g~~-rl~~~~~--l~~~~~L----lLLDE-p 440 (623)
..+...+++ +..+|+.+..+ ..+|||||+ |++++++ ++.+|++ +|||| |
T Consensus 192 ~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpP 269 (460)
T 2npi_A 192 PISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPS 269 (460)
T ss_dssp ECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCC
T ss_pred ccccccchhhhhcccccccCcchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCc
Confidence 011111111 22234433333 789999999 8999999 9999999 99999 9
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh--HH-----hhccc-----cceee-CceEE
Q 006974 441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD--LS-----CLKDK-----DTRFE-NAATE 492 (623)
Q Consensus 441 ~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~--l~-----~~~~~-----~~~i~-~g~~~ 492 (623)
|+|+|+. ...|.. .+.+.+.++|++||+++ +. .+|++ ++.+. +|.+.
T Consensus 270 ts~LD~~-~~~l~~----l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv 329 (460)
T 2npi_A 270 ISQLDEN-LAELHH----IIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS 329 (460)
T ss_dssp GGGSCSS-CHHHHH----HHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC
T ss_pred ccccChh-HHHHHH----HHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE
Confidence 9999998 333333 33334778999999976 33 68888 77787 77665
No 73
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.67 E-value=1.8e-16 Score=166.33 Aligned_cols=83 Identities=19% Similarity=0.163 Sum_probs=67.0
Q ss_pred hcccccccHHHH-HHHHHHHhc----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcccc
Q 006974 409 EQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKD 483 (623)
Q Consensus 409 ~~~~stfS~g~~-rl~~~~~l~----~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~ 483 (623)
+..++.||+|++ +++++++++ .+|+++||||||++||+.....+.. ++..+. .+.++|++||+.++..+||+.
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~-~l~~~~-~~~~vi~~tH~~~~~~~~d~~ 291 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKR-LLKENS-KHTQFIVITHNKIVMEAADLL 291 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHH-HHHHHT-TTSEEEEECCCTTGGGGCSEE
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhc-CCCeEEEEECCHHHHhhCceE
Confidence 456789999999 688888775 6889999999999999999999998 555564 478999999998877888875
Q ss_pred --ceeeCceEEE
Q 006974 484 --TRFENAATEF 493 (623)
Q Consensus 484 --~~i~~g~~~~ 493 (623)
+.+.+|.-.+
T Consensus 292 ~~v~~~~g~s~~ 303 (322)
T 1e69_A 292 HGVTMVNGVSAI 303 (322)
T ss_dssp EEEEESSSCEEE
T ss_pred EEEEEeCCEEEE
Confidence 5566664433
No 74
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.66 E-value=2.8e-17 Score=158.07 Aligned_cols=121 Identities=14% Similarity=0.026 Sum_probs=82.1
Q ss_pred EEEEEcCCCCCHHHHHHHH-hhhhhhhhhce---------------eecCCCCCCccHHHHHHHHcCCc--hhhhccccc
Q 006974 353 VVVITGPNTGGKTASMKTL-GLASLMSKAGL---------------YLPAKNHPRLPWFDLILADIGDH--QSLEQNLST 414 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~---------------~vp~~~~~~l~~~d~i~~~ig~~--~~~~~~~st 414 (623)
.++|+||||||||||+|++ |++.+. -.|. |+|+.... .++++..++.. ...++.+++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~-~~g~~~~~~~~~~~~~~ig~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 76 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR-AIGFWTEEVRDPETKKRTGFRIITTEG----KKKIFSSKFFTSKKLVGSYGVN 76 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG-EEEEEEEEEC------CCEEEEEETTC----CEEEEEETTCCCSSEETTEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc-CCCEEhhhhccccccceeEEEeecCcH----HHHHHHhhcCCccccccccccC
Confidence 5899999999999999999 666421 1221 22221100 01111111111 245677889
Q ss_pred ccHHHH-HHHHHHH-----hcCCCcEEEEeC--CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcC---chh-HHhhccc
Q 006974 415 FSGHIS-RIVDILE-----LVSRESLVLIDE--IGSGTDPSEGVALATSILQYLRDRVGLAVVTTH---YAD-LSCLKDK 482 (623)
Q Consensus 415 fS~g~~-rl~~~~~-----l~~~~~LlLLDE--p~~glD~~~~~~l~~all~~l~~~~~~vii~TH---~~~-l~~~~~~ 482 (623)
||+||+ ++.++++ ++.+|+++|||| |++++|+.....+... +.+.+.++|++|| +.+ +..++++
T Consensus 77 lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~----l~~~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 77 VQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQI----MHDPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHH----HTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred cCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHH----HhcCCCeEEEEEccCCCchHHHHHHhc
Confidence 999999 7888886 899999999999 9999999988777663 3334667888886 555 4556765
No 75
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.64 E-value=7.3e-18 Score=166.24 Aligned_cols=122 Identities=15% Similarity=0.160 Sum_probs=73.0
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh----------------hhceeecCCCCCCc-cHHHHHHHHcC---Cc
Q 006974 347 VECETRVVVITGPNTGGKTASMKTL-GLASLMS----------------KAGLYLPAKNHPRL-PWFDLILADIG---DH 405 (623)
Q Consensus 347 l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a----------------~~G~~vp~~~~~~l-~~~d~i~~~ig---~~ 405 (623)
+.+| ++++|+||||||||||||++ |+ .+.. +...|+|+.....+ .++...+..+. ..
T Consensus 19 i~~G-e~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~~~~ 96 (208)
T 3b85_A 19 IDTN-TIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDMVEP 96 (208)
T ss_dssp HHHC-SEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHHHHTTTSCT
T ss_pred ccCC-CEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHHHHHHhccH
Confidence 4788 89999999999999999999 77 5421 11224555421112 11111111111 11
Q ss_pred hhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHh
Q 006974 406 QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC 478 (623)
Q Consensus 406 ~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~ 478 (623)
+.+..-+.. +.||+ |+++|++++.+|+++||||||+| ....+.. ++..+ +.+.++| +|||.+...
T Consensus 97 ~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~-~l~~l-~~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 97 EVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKM-FLTRL-GFGSKMV-VTGDITQVD 162 (208)
T ss_dssp THHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHH-HHTTB-CTTCEEE-EEEC-----
T ss_pred HHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHH-HHHHh-cCCCEEE-EECCHHHHh
Confidence 111111111 22777 89999999999999999999999 5666666 44444 5578888 999987543
No 76
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.63 E-value=1.4e-15 Score=160.69 Aligned_cols=78 Identities=23% Similarity=0.261 Sum_probs=64.6
Q ss_pred hcccccccHHHHH-------HHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcc
Q 006974 409 EQNLSTFSGHISR-------IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKD 481 (623)
Q Consensus 409 ~~~~stfS~g~~r-------l~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~ 481 (623)
+++++.|||||++ ++++++++.+|+++||||||+||||.....+.. ++..+...+.++|++||+.++..+|+
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~-~l~~~~~~~~~vi~~sH~~~~~~~~d 321 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT-IMERYLKKIPQVILVSHDEELKDAAD 321 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHH-HHHHTGGGSSEEEEEESCGGGGGGCS
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEEChHHHHHhCC
Confidence 4578899999984 344556788999999999999999999999998 55556666789999999988888898
Q ss_pred ccceee
Q 006974 482 KDTRFE 487 (623)
Q Consensus 482 ~~~~i~ 487 (623)
+++.+.
T Consensus 322 ~~~~l~ 327 (339)
T 3qkt_A 322 HVIRIS 327 (339)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 877653
No 77
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.54 E-value=3.5e-16 Score=169.04 Aligned_cols=139 Identities=14% Similarity=0.118 Sum_probs=100.2
Q ss_pred cccccccCCce--------------------EEEEEcCCCCCHHHHHHHH-hhhhhhh-----------hhceeecCCCC
Q 006974 342 PIDIKVECETR--------------------VVVITGPNTGGKTASMKTL-GLASLMS-----------KAGLYLPAKNH 389 (623)
Q Consensus 342 ~i~l~l~~g~~--------------------~~~I~GpNgsGKSTlLk~i-gl~~~~a-----------~~G~~vp~~~~ 389 (623)
++++++.+| + +++|+||||+|||||||++ |+..+-. +. .++|+...
T Consensus 41 ~is~~i~~G-e~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~-~~v~q~~~ 118 (413)
T 1tq4_A 41 LIELRMRAG-NIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME-RHPYKHPN 118 (413)
T ss_dssp HHHHHHHHT-CHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC-CEEEECSS
T ss_pred hccceecCC-CCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee-EEeccccc
Confidence 899999999 8 9999999999999999999 6654311 11 24444321
Q ss_pred -CCcc------------HHHHHHHHcCCchhhhcccccccHH--HH-HHHHHHHhcC----------CCcEEEEeCCCCC
Q 006974 390 -PRLP------------WFDLILADIGDHQSLEQNLSTFSGH--IS-RIVDILELVS----------RESLVLIDEIGSG 443 (623)
Q Consensus 390 -~~l~------------~~d~i~~~ig~~~~~~~~~stfS~g--~~-rl~~~~~l~~----------~~~LlLLDEp~~g 443 (623)
..+. .++.++..+++.+. +..+. +|+| |+ ++.++.+++. +|+++++||||+|
T Consensus 119 ~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~-~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsg 196 (413)
T 1tq4_A 119 IPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY-DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGE 196 (413)
T ss_dssp CTTEEEEECCCGGGSSCCHHHHHHHTTGGGC-SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTC
T ss_pred cCCeeehHhhcccchHHHHHHHHHHcCCCcc-CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCccccc
Confidence 0111 14677888876653 33333 9998 87 7888888777 9999999999999
Q ss_pred CCHHHHHHHHHHHHHHH----hcC----CcEEEEEcCchh---HHhhccccc
Q 006974 444 TDPSEGVALATSILQYL----RDR----VGLAVVTTHYAD---LSCLKDKDT 484 (623)
Q Consensus 444 lD~~~~~~l~~all~~l----~~~----~~~vii~TH~~~---l~~~~~~~~ 484 (623)
+||.....+...+.+.. .+. ..+++++||+.+ +..+++.+.
T Consensus 197 LD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 197 PQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 99999999988555543 232 256889999864 667777654
No 78
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.54 E-value=4.8e-15 Score=165.64 Aligned_cols=159 Identities=11% Similarity=0.027 Sum_probs=113.0
Q ss_pred EEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhc-eeecCCCCCCccHHHHH------
Q 006974 327 MTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAG-LYLPAKNHPRLPWFDLI------ 398 (623)
Q Consensus 327 l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G-~~vp~~~~~~l~~~d~i------ 398 (623)
+++++++.+|++-.--++..+.+| ++++|+||||+|||||++++ |+........ .+.+++. .-.++.++
T Consensus 258 ~~~~~l~~g~~~ld~vL~g~i~~G-~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~--~~~l~~~~~~~g~~ 334 (525)
T 1tf7_A 258 SSNVRVSSGVVRLDEMCGGGFFKD-SIILATGATGTGKTLLVSRFVENACANKERAILFAYEES--RAQLLRNAYSWGMD 334 (525)
T ss_dssp CCCCEECCSCHHHHHHTTSSEESS-CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC--HHHHHHHHHTTSCC
T ss_pred cccceeecChHHHHHHhCCCCCCC-cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC--HHHHHHHHHHcCCC
Confidence 456677766642100134578899 99999999999999999999 5554432212 2344432 11112111
Q ss_pred ---HHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHH-----HHHHHHHHHHHHHhcCCcEEEE
Q 006974 399 ---LADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS-----EGVALATSILQYLRDRVGLAVV 469 (623)
Q Consensus 399 ---~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~-----~~~~l~~all~~l~~~~~~vii 469 (623)
+...|.....+..+.+||+|++ ++.+++.+..+|++||+| |++|+|+. .+..+.. ++..+++.|.++|+
T Consensus 335 ~~~~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~-ll~~l~~~g~tvil 412 (525)
T 1tf7_A 335 FEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIG-VTGYAKQEEITGLF 412 (525)
T ss_dssp HHHHHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHH-HHHHHHHTTCEEEE
T ss_pred HHHHHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHH-HHHHHHhCCCEEEE
Confidence 1123334445567788999999 788888899999999999 99999998 7777777 77788888999999
Q ss_pred EcCch----------h-HHhhccccceeeCce
Q 006974 470 TTHYA----------D-LSCLKDKDTRFENAA 490 (623)
Q Consensus 470 ~TH~~----------~-l~~~~~~~~~i~~g~ 490 (623)
+||+. . +..+||.++.+.++.
T Consensus 413 vsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 413 TNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp EEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred EECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99997 4 556889888776653
No 79
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.51 E-value=3.2e-14 Score=142.14 Aligned_cols=138 Identities=15% Similarity=0.067 Sum_probs=79.1
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHHhh-hh-hhhhhceeecCCCCCCccHHHHHHHHcCCc-hhh--------------
Q 006974 346 KVECETRVVVITGPNTGGKTASMKTLGL-AS-LMSKAGLYLPAKNHPRLPWFDLILADIGDH-QSL-------------- 408 (623)
Q Consensus 346 ~l~~g~~~~~I~GpNgsGKSTlLk~igl-~~-~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~-~~~-------------- 408 (623)
.+++| ++++|+||||||||||++++.. .. .....+.++.... ....+......+|.. +..
T Consensus 26 gi~~G-~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 102 (251)
T 2ehv_A 26 GFPEG-TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE--RARDLRREMASFGWDFEKYEKEGKIAIVDGVSS 102 (251)
T ss_dssp SEETT-CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS--CHHHHHHHHHTTTCCHHHHHHTTSEEEEC----
T ss_pred CCCCC-cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC--CHHHHHHHHHHcCCChHHHhhcCCEEEEEcccc
Confidence 57889 9999999999999999999942 11 1112223332221 111111222223321 000
Q ss_pred ---------hcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCC-----HHHHHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974 409 ---------EQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD-----PSEGVALATSILQYLRDRVGLAVVTTHY 473 (623)
Q Consensus 409 ---------~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD-----~~~~~~l~~all~~l~~~~~~vii~TH~ 473 (623)
....+..+.+.. ..........+|++++||||++++| +.....+.. ++..+++.|+|+|++||+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~-l~~~l~~~g~tii~vtH~ 181 (251)
T 2ehv_A 103 VVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLK-LNTILLEMGVTTILTTEA 181 (251)
T ss_dssp ---------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHH-HHHHHHHHCCEEEEEECC
T ss_pred ccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHH-HHHHHHHCCCeEEEEECC
Confidence 001111222222 1111122357999999999999996 444444555 777788889999999999
Q ss_pred hhH----------Hhhc-cccceee
Q 006974 474 ADL----------SCLK-DKDTRFE 487 (623)
Q Consensus 474 ~~l----------~~~~-~~~~~i~ 487 (623)
.+. ..+| |+++.+.
T Consensus 182 ~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 182 PDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp C----CCSSSSSCGGGGCSEEEEEE
T ss_pred CCCCcccccccChhhEeeeEEEEEe
Confidence 774 3677 8877764
No 80
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.51 E-value=4.5e-16 Score=152.68 Aligned_cols=59 Identities=12% Similarity=-0.173 Sum_probs=46.8
Q ss_pred HhcCCCcEEEEeCCCCCC----CHHHHHHHHHHHHHHHh-cCCcEEEEEcCchh-HHhhcccccee
Q 006974 427 ELVSRESLVLIDEIGSGT----DPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRF 486 (623)
Q Consensus 427 ~l~~~~~LlLLDEp~~gl----D~~~~~~l~~all~~l~-~~~~~vii~TH~~~-l~~~~~~~~~i 486 (623)
+++.+|++++||||++|+ |+.....+... +..+. +.+.++|++|||++ ...+|+++..+
T Consensus 137 ~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~-l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l 201 (207)
T 1znw_A 137 VFLAPPSWQDLQARLIGRGTETADVIQRRLDTA-RIELAAQGDFDKVVVNRRLESACAELVSLLVG 201 (207)
T ss_dssp EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHH-HHHHHGGGGSSEEEECSSHHHHHHHHHHHHC-
T ss_pred EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHH-HHHHhhhccCcEEEECCCHHHHHHHHHHHHHh
Confidence 356789999999999997 77788888884 45565 45789999999987 55789888765
No 81
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.47 E-value=1.1e-14 Score=154.40 Aligned_cols=153 Identities=9% Similarity=0.102 Sum_probs=107.6
Q ss_pred cEEEceeeeecC-Ccc-c-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-----------------------
Q 006974 326 EMTVGSLSKGIS-DFP-V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS----------------------- 378 (623)
Q Consensus 326 ~l~~~~l~~~y~-~~~-v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a----------------------- 378 (623)
.++.+++++.|+ +.. + ++ |.+.+| ++++|+||||+||||||++| |+...-.
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l-l~i~~G-q~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~ 122 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL-LTCGIG-QRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQS 122 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH-SCEETT-CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHH
T ss_pred CeeecccceecCCCCEEEEee-eeecCC-CEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhh
Confidence 456788999997 433 4 66 999999 99999999999999999999 5543210
Q ss_pred ---hhceeecCCCCCCccHHHHH---HHHcCCchh-hh---------cccccccHHHHHHHHHHHhcCCCcEEEEeCCCC
Q 006974 379 ---KAGLYLPAKNHPRLPWFDLI---LADIGDHQS-LE---------QNLSTFSGHISRIVDILELVSRESLVLIDEIGS 442 (623)
Q Consensus 379 ---~~G~~vp~~~~~~l~~~d~i---~~~ig~~~~-~~---------~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~ 442 (623)
+...++++.. .+...++ +..++..+. .+ ..++.||+|+++++++ +.+|.+ |+
T Consensus 123 ~~~~~v~~~~~~~---~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~la---l~~p~~------t~ 190 (347)
T 2obl_A 123 TLSKCVLVVTTSD---RPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLA---SGEPDV------RG 190 (347)
T ss_dssp HHTTEEEEEECTT---SCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHH---TTCCCC------BT
T ss_pred hhhceEEEEECCC---CCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHH---cCCCCc------cc
Confidence 0011222221 1112211 111111111 11 5688999999878877 466666 89
Q ss_pred CCCHHHHHHHHHHHHHHHhc--CCc-----EEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 443 GTDPSEGVALATSILQYLRD--RVG-----LAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 443 glD~~~~~~l~~all~~l~~--~~~-----~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
|+||.....+.. +++.+.+ .|. ||+++|||++ ..+|+++..+.+|++..+
T Consensus 191 Gldp~~~~~l~~-ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~ 247 (347)
T 2obl_A 191 GFPPSVFSSLPK-LLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLT 247 (347)
T ss_dssp TBCHHHHHHHHH-HHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBC
T ss_pred CCCHHHHHHHHH-HHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEe
Confidence 999999999988 7777764 466 8899999998 778999999999998876
No 82
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.45 E-value=4.3e-15 Score=156.52 Aligned_cols=136 Identities=14% Similarity=0.078 Sum_probs=90.1
Q ss_pred EceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCch
Q 006974 329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQ 406 (623)
Q Consensus 329 ~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~ 406 (623)
++++++ | ..+ ++++.+.+| ++++|+|||||||||||+++ .|.+.|..+...+...+ .+...
T Consensus 151 ~~~v~f-y--~~~l~~l~~~i~~g-~~v~i~G~~GsGKTTll~~l--------~g~~~~~~g~i~i~~~~----e~~~~- 213 (330)
T 2pt7_A 151 YNLLDN-K--EQAISAIKDGIAIG-KNVIVCGGTGSGKTTYIKSI--------MEFIPKEERIISIEDTE----EIVFK- 213 (330)
T ss_dssp TTTSTT-H--HHHHHHHHHHHHHT-CCEEEEESTTSCHHHHHHHG--------GGGSCTTSCEEEEESSC----CCCCS-
T ss_pred cCchhh-H--HHHHhhhhhhccCC-CEEEEECCCCCCHHHHHHHH--------hCCCcCCCcEEEECCee----ccccc-
Confidence 445555 5 224 889999999 89999999999999999999 55444443321111000 00110
Q ss_pred hhhccccccc-HHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccc
Q 006974 407 SLEQNLSTFS-GHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDT 484 (623)
Q Consensus 407 ~~~~~~stfS-~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~ 484 (623)
.....++-++ +|++ +..+++++..+|+++|+|||++. .+.. +++.+...+.++|+|||..+....+++..
T Consensus 214 ~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~-~l~~~~~g~~tvi~t~H~~~~~~~~dri~ 285 (330)
T 2pt7_A 214 HHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRSS-------EAYD-FYNVLCSGHKGTLTTLHAGSSEEAFIRLA 285 (330)
T ss_dssp SCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHH-HHHHHHTTCCCEEEEEECSSHHHHHHHHH
T ss_pred cchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHH-HHHHHhcCCCEEEEEEcccHHHHHhhhhe
Confidence 0111222222 5676 78889999999999999999982 2333 44555543447999999988778888887
Q ss_pred eeeCc
Q 006974 485 RFENA 489 (623)
Q Consensus 485 ~i~~g 489 (623)
.+.+|
T Consensus 286 ~l~~g 290 (330)
T 2pt7_A 286 NMSSS 290 (330)
T ss_dssp HHHHT
T ss_pred ehhcC
Confidence 76655
No 83
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.43 E-value=1e-15 Score=159.10 Aligned_cols=139 Identities=11% Similarity=-0.006 Sum_probs=98.0
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeecCCCC--------CCcc-
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNH--------PRLP- 393 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp~~~~--------~~l~- 393 (623)
.++++||++.|+ ..+ +++|++++| ++++|+||||||||||+++| |++ -+++-.++|+... ..+.
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~G-e~vaIvGpsGsGKSTLl~lL~gl~--~G~I~~~v~q~~~lf~~ti~~~ni~~ 176 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKK-NCLAFIGPPNTGKSMLCNSLIHFL--GGSVLSFANHKSHFWLASLADTRAAL 176 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTC-SEEEEECSSSSSHHHHHHHHHHHH--TCEEECGGGTTSGGGGGGGTTCSCEE
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCC-CEEEEECCCCCcHHHHHHHHhhhc--CceEEEEecCccccccccHHHHhhcc
Confidence 356789999997 444 999999999 99999999999999999999 665 1122224454421 0111
Q ss_pred ------HHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEE
Q 006974 394 ------WFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLA 467 (623)
Q Consensus 394 ------~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~v 467 (623)
.....+..+ +.+-++ ...||||+++. +++++.+|++|| |++||+.....+..
T Consensus 177 ~~~~~~~~~~~i~~~-L~~gld--g~~LSgGqkQR--ARAll~~p~iLl----Ts~LD~~~~~~i~~------------- 234 (305)
T 2v9p_A 177 VDDATHACWRYFDTY-LRNALD--GYPVSIDRKHK--AAVQIKAPPLLV----TSNIDVQAEDRYLY------------- 234 (305)
T ss_dssp EEEECHHHHHHHHHT-TTGGGG--TCCEECCCSSC--CCCEECCCCEEE----EESSCSTTCGGGGG-------------
T ss_pred CccccHHHHHHHHHH-hHccCC--ccCcCHHHHHH--HHHHhCCCCEEE----ECCCCHHHHHHHHH-------------
Confidence 122333332 222233 67999999955 888999999999 99999988777642
Q ss_pred EEEcCchhHHhhccccceeeCceEEE
Q 006974 468 VVTTHYADLSCLKDKDTRFENAATEF 493 (623)
Q Consensus 468 ii~TH~~~l~~~~~~~~~i~~g~~~~ 493 (623)
.||+.....+||++ .+.+|++..
T Consensus 235 --ltH~~~~~~~aD~i-vl~~G~iv~ 257 (305)
T 2v9p_A 235 --LHSRVQTFRFEQPC-TDESGEQPF 257 (305)
T ss_dssp --GTTTEEEEECCCCC-CCC---CCC
T ss_pred --HhCCHHHHHhCCEE-EEeCCEEEE
Confidence 18998877789999 999988754
No 84
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.43 E-value=2.2e-13 Score=134.31 Aligned_cols=143 Identities=13% Similarity=0.102 Sum_probs=83.8
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhh------ceeecCCCCCCccHHHHHHHHcCCch-hhhcc---ccc
Q 006974 346 KVECETRVVVITGPNTGGKTASMKTL-GLASLMSKA------GLYLPAKNHPRLPWFDLILADIGDHQ-SLEQN---LST 414 (623)
Q Consensus 346 ~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~------G~~vp~~~~~~l~~~d~i~~~ig~~~-~~~~~---~st 414 (623)
-+.+| ++++|+||||||||||++++ |++.+-... ..++..........+..++..++... .+..+ ...
T Consensus 21 gi~~G-~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 99 (231)
T 4a74_A 21 GIETQ-AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARA 99 (231)
T ss_dssp SEESS-EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEEC
T ss_pred CCCCC-cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEec
Confidence 46788 99999999999999999999 444332111 12333322111122344555555432 22222 223
Q ss_pred ccHHHH-H-HHHHHHh-------cCCCcEEEEeCCCCCCCHHH------------HHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974 415 FSGHIS-R-IVDILEL-------VSRESLVLIDEIGSGTDPSE------------GVALATSILQYLRDRVGLAVVTTHY 473 (623)
Q Consensus 415 fS~g~~-r-l~~~~~l-------~~~~~LlLLDEp~~glD~~~------------~~~l~~all~~l~~~~~~vii~TH~ 473 (623)
++...+ + +..+... ..+|++|+||||++++|+.. ...+...+.+..++.|+++|++||+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~ 179 (231)
T 4a74_A 100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 179 (231)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 343332 2 3333332 45999999999999999841 1255555555555668999999995
Q ss_pred hh-----HHhhccccceeeCc
Q 006974 474 AD-----LSCLKDKDTRFENA 489 (623)
Q Consensus 474 ~~-----l~~~~~~~~~i~~g 489 (623)
.. +..+|+..+.+.++
T Consensus 180 ~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 180 QANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp C---------CCSEEEEEEEC
T ss_pred ccCcchhhHhhceEEEEEEec
Confidence 43 45677777776653
No 85
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.41 E-value=7.8e-13 Score=136.50 Aligned_cols=148 Identities=11% Similarity=0.018 Sum_probs=87.1
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhh-hceeecCCCCCCccHHHHHHHHc-CCc-------------
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK-AGLYLPAKNHPRLPWFDLILADI-GDH------------- 405 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~-~G~~vp~~~~~~l~~~d~i~~~i-g~~------------- 405 (623)
++++.+.+| ++++|+||||+|||||++++ |.+..... ...|+..+. ..-.+..++.... +..
T Consensus 27 ~i~~~l~~G-~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~-~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~ 104 (296)
T 1cr0_A 27 DKTLGARGG-EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE-SVEETAEDLIGLHNRVRLRQSDSLKREIIE 104 (296)
T ss_dssp HHHCSBCTT-CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS-CHHHHHHHHHHHHTTCCGGGCHHHHHHHHH
T ss_pred HHhcCCCCC-eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC-CHHHHHHHHHHHHcCCChhhccccccCCCC
Confidence 778899999 99999999999999999999 44433211 112322211 0000111111100 000
Q ss_pred ----------------hhhhcccccccHHH-HHHHHHHHhcCCCcEEEEeCCCC---C---CCH-HHHHHHHHHHHHHHh
Q 006974 406 ----------------QSLEQNLSTFSGHI-SRIVDILELVSRESLVLIDEIGS---G---TDP-SEGVALATSILQYLR 461 (623)
Q Consensus 406 ----------------~~~~~~~stfS~g~-~rl~~~~~l~~~~~LlLLDEp~~---g---lD~-~~~~~l~~all~~l~ 461 (623)
-.+...+..++.++ ++...+++++.+|++||||||++ + +|+ .....+...+.+..+
T Consensus 105 ~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~ 184 (296)
T 1cr0_A 105 NGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAK 184 (296)
T ss_dssp HTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 00111224567766 34444777889999999999999 4 344 455566664444334
Q ss_pred cCCcEEEEEcCch-----------------------hHHhhccccceeeCceE
Q 006974 462 DRVGLAVVTTHYA-----------------------DLSCLKDKDTRFENAAT 491 (623)
Q Consensus 462 ~~~~~vii~TH~~-----------------------~l~~~~~~~~~i~~g~~ 491 (623)
+.+++||++||+. .+..+||.++.+.++..
T Consensus 185 ~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 185 STGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5589999999995 35568888888876653
No 86
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.40 E-value=1.6e-12 Score=127.86 Aligned_cols=140 Identities=13% Similarity=0.042 Sum_probs=86.5
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHHh-hhhhhhhhceeecCCCCCCccHHHHHHHHcCCc-hhhh--------c-----
Q 006974 346 KVECETRVVVITGPNTGGKTASMKTLG-LASLMSKAGLYLPAKNHPRLPWFDLILADIGDH-QSLE--------Q----- 410 (623)
Q Consensus 346 ~l~~g~~~~~I~GpNgsGKSTlLk~ig-l~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~-~~~~--------~----- 410 (623)
.+.+| ++++|+||||+|||||+++++ .+........|+.... ....+...+..+|.. +... .
T Consensus 19 gi~~G-~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (235)
T 2w0m_A 19 GIPQG-FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE--SRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEK 95 (235)
T ss_dssp SEETT-CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS--CHHHHHHHHHHTTCCCGGGBTTTEEEEECCC---
T ss_pred CCcCC-CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc--CHHHHHHHHHHhcchHHHHhhCCEEEEecccccc
Confidence 57788 899999999999999999993 4433222223433322 111111222234421 1100 0
Q ss_pred ----ccccccHHHH-HHHHHHHhcCCCc--EEEEeCCCCCC--CHHHHHHHHHHHHHHHhcCCcEEEEEcCch-------
Q 006974 411 ----NLSTFSGHIS-RIVDILELVSRES--LVLIDEIGSGT--DPSEGVALATSILQYLRDRVGLAVVTTHYA------- 474 (623)
Q Consensus 411 ----~~stfS~g~~-rl~~~~~l~~~~~--LlLLDEp~~gl--D~~~~~~l~~all~~l~~~~~~vii~TH~~------- 474 (623)
.....|.++. +.........+|+ +|++|||++++ |+.....+...+.+...+.++++|++||+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~ 175 (235)
T 2w0m_A 96 EDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAF 175 (235)
T ss_dssp -CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC---------
T ss_pred CceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCccccccc
Confidence 0123366665 3333333446899 99999999877 998888888866655566789999999998
Q ss_pred -h-HHhhccccceeeC
Q 006974 475 -D-LSCLKDKDTRFEN 488 (623)
Q Consensus 475 -~-l~~~~~~~~~i~~ 488 (623)
. +..+||.++.+..
T Consensus 176 ~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 176 GFGVEHVADGIIRFRR 191 (235)
T ss_dssp --CHHHHCSEEEEEEE
T ss_pred ccchheeeeEEEEEEE
Confidence 2 6678888877654
No 87
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.40 E-value=8.1e-13 Score=123.11 Aligned_cols=79 Identities=23% Similarity=0.243 Sum_probs=67.8
Q ss_pred hhhcccccccHHHH-HHHHH------HHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhh
Q 006974 407 SLEQNLSTFSGHIS-RIVDI------LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL 479 (623)
Q Consensus 407 ~~~~~~stfS~g~~-rl~~~------~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~ 479 (623)
..++++++|||||+ +++++ ++++.+|+++||||||+|||+.....+.. ++..+.+.|.++|++||+.++..+
T Consensus 50 ~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiiivsH~~~~~~~ 128 (148)
T 1f2t_B 50 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT-IMERYLKKIPQVILVSHDEELKDA 128 (148)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHH-HHHHTGGGSSEEEEEESCGGGGGG
T ss_pred cccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHH-HHHHHHccCCEEEEEEChHHHHHh
Confidence 35678999999999 67665 56789999999999999999999999998 555566668899999999988889
Q ss_pred cccccee
Q 006974 480 KDKDTRF 486 (623)
Q Consensus 480 ~~~~~~i 486 (623)
|++++.+
T Consensus 129 ~d~ii~l 135 (148)
T 1f2t_B 129 ADHVIRI 135 (148)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 9988887
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.39 E-value=7.6e-14 Score=155.94 Aligned_cols=142 Identities=16% Similarity=0.142 Sum_probs=89.2
Q ss_pred cccc-cccCCceEEEEEcCCCCCHHHHHHH--H-hhhhhhhhhceeecCCCCCCccHHHHHHHHcCCc-hhh--------
Q 006974 342 PIDI-KVECETRVVVITGPNTGGKTASMKT--L-GLASLMSKAGLYLPAKNHPRLPWFDLILADIGDH-QSL-------- 408 (623)
Q Consensus 342 ~i~l-~l~~g~~~~~I~GpNgsGKSTlLk~--i-gl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~-~~~-------- 408 (623)
++++ .+.+| ++++|+||||||||||+++ + |+..+-. -..++-... .... .......+|.. |..
T Consensus 30 ~i~~G~i~~G-e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~-g~i~v~g~~-~~~~-~~~~~~~~g~~~q~~~~~~~l~~ 105 (525)
T 1tf7_A 30 DISHGGLPIG-RSTLVSGTSGTGKTLFSIQFLYNGIIEFDE-PGVFVTFEE-TPQD-IIKNARSFGWDLAKLVDEGKLFI 105 (525)
T ss_dssp HHTTSSEETT-SEEEEEESTTSSHHHHHHHHHHHHHHHHCC-CEEEEESSS-CHHH-HHHHHGGGTCCHHHHHHTTSEEE
T ss_pred HhcCCCCCCC-eEEEEEcCCCCCHHHHHHHHHHHHHHhCCC-CEEEEEEeC-CHHH-HHHHHHHcCCChHHhhccCcEEE
Confidence 8999 99999 9999999999999999999 4 6554321 112332221 1100 11111222211 100
Q ss_pred ---------hcccccccHHHHHHHHHHHh-cCCCcEEEEeCCCC-----CCCHHHHHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974 409 ---------EQNLSTFSGHISRIVDILEL-VSRESLVLIDEIGS-----GTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (623)
Q Consensus 409 ---------~~~~stfS~g~~rl~~~~~l-~~~~~LlLLDEp~~-----glD~~~~~~l~~all~~l~~~~~~vii~TH~ 473 (623)
..-+..+.-+...-..+..+ ..+|.+|+||||++ ++|+..+..+.. ++..+++.|.|+|++||+
T Consensus 106 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~-ll~~l~~~g~tvl~itH~ 184 (525)
T 1tf7_A 106 LDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFR-LVARLKQIGATTVMTTER 184 (525)
T ss_dssp EECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHH-HHHHHHHHTCEEEEEEEC
T ss_pred EecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHH-HHHHHHHCCCEEEEEecC
Confidence 01112232222211222222 36899999999987 468999999888 777788889999999999
Q ss_pred hhH----------HhhccccceeeC
Q 006974 474 ADL----------SCLKDKDTRFEN 488 (623)
Q Consensus 474 ~~l----------~~~~~~~~~i~~ 488 (623)
.+. ..+||+++.+.+
T Consensus 185 ~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 185 IEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp SSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred CCCccccccccceeeeeeEEEEEEE
Confidence 874 345999888876
No 89
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.37 E-value=1.1e-12 Score=134.44 Aligned_cols=127 Identities=11% Similarity=0.072 Sum_probs=81.3
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHHh-hhhhh----------hhhceeecCCCCCCccHHH---------------HHH
Q 006974 346 KVECETRVVVITGPNTGGKTASMKTLG-LASLM----------SKAGLYLPAKNHPRLPWFD---------------LIL 399 (623)
Q Consensus 346 ~l~~g~~~~~I~GpNgsGKSTlLk~ig-l~~~~----------a~~G~~vp~~~~~~l~~~d---------------~i~ 399 (623)
.+.+| ++++|+||||+|||||+++++ .+..- .....|+..+.. .-.+.. .++
T Consensus 26 gl~~G-~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~-~~~~~~r~~~~g~~~~~~~~~~~~ 103 (279)
T 1nlf_A 26 NMVAG-TVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP-PTAIHHRLHALGAHLSAEERQAVA 103 (279)
T ss_dssp TEETT-SEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC-HHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CccCC-CEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC-HHHHHHHHHHHHhhcChhhhhhcc
Confidence 46788 899999999999999999993 33210 011234444321 101111 112
Q ss_pred HHcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCC--CCCHHHH---HHHHHHHHHHHhcCCcEEEEEcCch
Q 006974 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGS--GTDPSEG---VALATSILQYLRDRVGLAVVTTHYA 474 (623)
Q Consensus 400 ~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~--glD~~~~---~~l~~all~~l~~~~~~vii~TH~~ 474 (623)
..+++.+..++.+..+|+|+.+. +.+++.+|++||||||++ ++|+... ..+...+....++.|+++|++||+.
T Consensus 104 ~~l~l~~~~~~~~~~ls~g~~~~--i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 104 DGLLIQPLIGSLPNIMAPEWFDG--LKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp HHEEECCCTTSCCCTTSHHHHHH--HHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred CceEEeecCCCCcccCCHHHHHH--HHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 33333344456788999998643 345667899999999999 9998543 5666645554456689999999997
Q ss_pred hH
Q 006974 475 DL 476 (623)
Q Consensus 475 ~l 476 (623)
..
T Consensus 182 ~~ 183 (279)
T 1nlf_A 182 KG 183 (279)
T ss_dssp --
T ss_pred Cc
Confidence 64
No 90
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.37 E-value=9.7e-15 Score=152.60 Aligned_cols=149 Identities=8% Similarity=0.074 Sum_probs=97.7
Q ss_pred CCcEEEceeeeecCCcccccccc-----------------------ccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-
Q 006974 324 NSEMTVGSLSKGISDFPVPIDIK-----------------------VECETRVVVITGPNTGGKTASMKTL-GLASLMS- 378 (623)
Q Consensus 324 ~~~l~~~~l~~~y~~~~v~i~l~-----------------------l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a- 378 (623)
++.+++++|++.|+...-.+++. +.+| .+++|+||||||||||+|+| |++.+..
T Consensus 41 ~~~i~~~~v~~~y~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g-~ivgI~G~sGsGKSTL~~~L~gll~~~~G 119 (312)
T 3aez_A 41 GEQIDLLEVEEVYLPLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVP-FIIGVAGSVAVGKSTTARVLQALLARWDH 119 (312)
T ss_dssp TCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCC-EEEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred CCeEEeeehhhhhhhHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCC-EEEEEECCCCchHHHHHHHHHhhccccCC
Confidence 35688999999995211134433 6778 99999999999999999999 7766531
Q ss_pred -hhceeecCCCCCCcc----------------------HHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcE
Q 006974 379 -KAGLYLPAKNHPRLP----------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (623)
Q Consensus 379 -~~G~~vp~~~~~~l~----------------------~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~L 434 (623)
....++|++.. .++ .+..++..++ ....+..+.+||+|++ |+..+++++.+|++
T Consensus 120 ~~~v~~v~qd~~-~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~i 197 (312)
T 3aez_A 120 HPRVDLVTTDGF-LYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDI 197 (312)
T ss_dssp CCCEEEEEGGGG-BCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSE
T ss_pred CCeEEEEecCcc-CCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCE
Confidence 11235565431 111 1334455555 2333467889999999 77777889999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH--Hhhccccc
Q 006974 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL--SCLKDKDT 484 (623)
Q Consensus 435 lLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l--~~~~~~~~ 484 (623)
||+|||+...|+.. . .+.+.--.+|+++|+.++ ..+..+..
T Consensus 198 lIlDep~~~~d~~~-~--------~l~~~~D~~I~V~a~~~~~~~R~i~R~~ 240 (312)
T 3aez_A 198 LILEGLNVLQTGPT-L--------MVSDLFDFSLYVDARIEDIEQWYVSRFL 240 (312)
T ss_dssp EEEECTTTTCCCSS-C--------CGGGGCSEEEEEEECHHHHHHHHHHHHH
T ss_pred EEECCccccCCcch-H--------HHHHhcCcEEEEECCHHHHHHHHHHHHH
Confidence 99999999998621 0 122222355777777653 33444443
No 91
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.37 E-value=3.2e-13 Score=140.41 Aligned_cols=121 Identities=13% Similarity=0.090 Sum_probs=83.1
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------------------------h-hceeecCCCCCCcc--
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------------------------K-AGLYLPAKNHPRLP-- 393 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------------------------~-~G~~vp~~~~~~l~-- 393 (623)
+++|.+.+| ++++|+|||||||||+++.+ |++.+.. + ...++|+......+
T Consensus 92 ~l~~~~~~g-~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 92 ELQLGFRKP-AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp SCCCCSSSC-EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred ccccccCCC-cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 678888899 99999999999999999999 6654210 0 12356665420222
Q ss_pred -HHHHHHH------------HcCCchhhhcccccccHHHHHHHHHHHhcCCCc--EEEEeCCCCCCCHHHHHHHHHHHHH
Q 006974 394 -WFDLILA------------DIGDHQSLEQNLSTFSGHISRIVDILELVSRES--LVLIDEIGSGTDPSEGVALATSILQ 458 (623)
Q Consensus 394 -~~d~i~~------------~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~--LlLLDEp~~glD~~~~~~l~~all~ 458 (623)
.++.+.. .+|..+..++.+++|| .+++.++++++.+|. +++|| ||+|+|+.... .
T Consensus 171 ~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS--kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~-------~ 240 (302)
T 3b9q_A 171 VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI--ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA-------R 240 (302)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH--HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH-------H
T ss_pred HHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH--HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH-------H
Confidence 2343321 1233334455667777 447888888999999 99999 99999997542 2
Q ss_pred HHh-cCCcEEEEEcCc
Q 006974 459 YLR-DRVGLAVVTTHY 473 (623)
Q Consensus 459 ~l~-~~~~~vii~TH~ 473 (623)
.+. ..+.++|++||.
T Consensus 241 ~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 241 EFNEVVGITGLILTKL 256 (302)
T ss_dssp HHHHHTCCCEEEEECC
T ss_pred HHHHhcCCCEEEEeCC
Confidence 233 458899999994
No 92
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.35 E-value=8.4e-14 Score=141.90 Aligned_cols=120 Identities=12% Similarity=0.146 Sum_probs=76.0
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeecCCCCCCc------cHHHHHHHHcCCchhhhccccc
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRL------PWFDLILADIGDHQSLEQNLST 414 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp~~~~~~l------~~~d~i~~~ig~~~~~~~~~st 414 (623)
+++ +.+| ++++|+|||||||||+|+++ |++.+. ..|..........+ .++.+ ..+|. ...+
T Consensus 19 ~i~--i~~g-~~v~i~Gp~GsGKSTll~~l~g~~~~~-~~G~I~~~g~~i~~~~~~~~~~v~q--~~~gl------~~~~ 86 (261)
T 2eyu_A 19 ELC--HRKM-GLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIEYVFKHKKSIVNQ--REVGE------DTKS 86 (261)
T ss_dssp HGG--GCSS-EEEEEECSTTCSHHHHHHHHHHHHHHH-CCCEEEEEESSCCSCCCCSSSEEEE--EEBTT------TBSC
T ss_pred HHh--hCCC-CEEEEECCCCccHHHHHHHHHHhCCCC-CCCEEEEcCCcceeecCCcceeeeH--HHhCC------CHHH
Confidence 565 7889 89999999999999999999 655432 02321111100000 00000 00111 1123
Q ss_pred ccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcccccee
Q 006974 415 FSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF 486 (623)
Q Consensus 415 fS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i 486 (623)
| ++.++.+++.+|+++|+|||+ |+.....+. +.. ..|.+++++||+.+....+++...+
T Consensus 87 l-----~~~la~aL~~~p~illlDEp~---D~~~~~~~l----~~~-~~g~~vl~t~H~~~~~~~~dri~~l 145 (261)
T 2eyu_A 87 F-----ADALRAALREDPDVIFVGEMR---DLETVETAL----RAA-ETGHLVFGTLHTNTAIDTIHRIVDI 145 (261)
T ss_dssp H-----HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH----HHH-HTTCEEEEEECCSSHHHHHHHHHHT
T ss_pred H-----HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH----HHH-ccCCEEEEEeCcchHHHHHHHHhhh
Confidence 3 677777788899999999999 887754433 322 4588999999998877777766544
No 93
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.35 E-value=2.2e-13 Score=148.60 Aligned_cols=156 Identities=10% Similarity=0.098 Sum_probs=110.5
Q ss_pred cEEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------------
Q 006974 326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------------- 376 (623)
Q Consensus 326 ~l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~------------------------- 376 (623)
.++++++++.|+ +..+ ++ |.+.+| ++++|+||||+||||||++| |+..+
T Consensus 131 ~l~~~~v~~~~~tg~~vld~v-l~i~~G-q~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 131 PLQRTPIEHVLDTGVRAINAL-LTVGRG-QRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp TTTSCCCCSBCCCSCHHHHHH-SCCBTT-CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred ceEEeccceecCCCceEEeee-EEecCC-CEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 466788999997 4444 78 999999 99999999999999999999 55421
Q ss_pred --hhhhceeecCCCCCCcc---HHHHH------HHHcCCc-hhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCC
Q 006974 377 --MSKAGLYLPAKNHPRLP---WFDLI------LADIGDH-QSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGT 444 (623)
Q Consensus 377 --~a~~G~~vp~~~~~~l~---~~d~i------~~~ig~~-~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~gl 444 (623)
+.+...++++.....+. ..+.+ +...+.. ..+-..++.||+|++|++++ +.+|++ |+|+
T Consensus 209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslA---l~~p~~------t~gl 279 (438)
T 2dpy_A 209 DGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALA---IGEPPA------TKGY 279 (438)
T ss_dssp HHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHH---TTCCCC------SSSC
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHH---hCCCcc------cccC
Confidence 11122467764322111 11221 1111110 01123478899999888887 777777 9999
Q ss_pred CHHHHHHHHHHHHHHHhc---C-Cc-----EEEEEcCchhHHhhccccceeeCceEEEe
Q 006974 445 DPSEGVALATSILQYLRD---R-VG-----LAVVTTHYADLSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 445 D~~~~~~l~~all~~l~~---~-~~-----~vii~TH~~~l~~~~~~~~~i~~g~~~~~ 494 (623)
||.....+.. +++.+.+ . |. |++++|||++ ..+|++...+.+|++..+
T Consensus 280 D~~~~~~l~~-ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~ 336 (438)
T 2dpy_A 280 PPSVFAKLPA-LVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLS 336 (438)
T ss_dssp CTTHHHHHHH-HHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEEC
T ss_pred CHHHHHHHHH-HHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEe
Confidence 9999999998 6666655 3 53 8999999998 778999999999998876
No 94
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.33 E-value=5.2e-13 Score=127.46 Aligned_cols=110 Identities=15% Similarity=0.189 Sum_probs=71.4
Q ss_pred ccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCC--CccHHHHHHHHcCCchhhhcccccccHHHH
Q 006974 343 IDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP--RLPWFDLILADIGDHQSLEQNLSTFSGHIS 420 (623)
Q Consensus 343 i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~--~l~~~d~i~~~ig~~~~~~~~~stfS~g~~ 420 (623)
-++.+.+| +.++|+||||+|||||++++ .+.+.|..+.. .++ ...++..+. .. ++.+..
T Consensus 31 ~~~~~~~g-~~~~l~G~~G~GKTtL~~~i--------~~~~~~~~g~~~~~~~-~~~~~~~~~--~~-------~~~~~~ 91 (180)
T 3ec2_A 31 HNFNPEEG-KGLTFVGSPGVGKTHLAVAT--------LKAIYEKKGIRGYFFD-TKDLIFRLK--HL-------MDEGKD 91 (180)
T ss_dssp HSCCGGGC-CEEEECCSSSSSHHHHHHHH--------HHHHHHHSCCCCCEEE-HHHHHHHHH--HH-------HHHTCC
T ss_pred HhccccCC-CEEEEECCCCCCHHHHHHHH--------HHHHHHHcCCeEEEEE-HHHHHHHHH--HH-------hcCchH
Confidence 35667778 89999999999999999999 33333333311 112 222222211 00 110000
Q ss_pred HHHHHHHhcCCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEEEcCch
Q 006974 421 RIVDILELVSRESLVLIDEIGS-GTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (623)
Q Consensus 421 rl~~~~~l~~~~~LlLLDEp~~-glD~~~~~~l~~all~~l~~~~~~vii~TH~~ 474 (623)
. .++....+|++|+||||+. ++|+.....+.. +++...+.+.++|+|||+.
T Consensus 92 ~--~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~-ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 92 T--KFLKTVLNSPVLVLDDLGSERLSDWQRELISY-IITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp S--HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHH-HHHHHHHTTCEEEEECCCC
T ss_pred H--HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHH-HHHHHHHcCCCEEEEcCCC
Confidence 0 1222345899999999995 999999888877 7777777788999999985
No 95
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.31 E-value=1.9e-12 Score=137.46 Aligned_cols=121 Identities=13% Similarity=0.090 Sum_probs=83.7
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------------------------h-hceeecCCCCCCcc--
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------------------------K-AGLYLPAKNHPRLP-- 393 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------------------------~-~G~~vp~~~~~~l~-- 393 (623)
+++|++.+| ++++|+|||||||||+++.+ |++.... + ...++|+......+
T Consensus 149 ~l~l~~~~g-~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 149 ELQLGFRKP-AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp SCCCCSSSS-EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CcceecCCC-eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 678888899 99999999999999999999 6654210 0 12356665320222
Q ss_pred -HHHHHHH------------HcCCchhhhcccccccHHHHHHHHHHHhcCCCc--EEEEeCCCCCCCHHHHHHHHHHHHH
Q 006974 394 -WFDLILA------------DIGDHQSLEQNLSTFSGHISRIVDILELVSRES--LVLIDEIGSGTDPSEGVALATSILQ 458 (623)
Q Consensus 394 -~~d~i~~------------~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~--LlLLDEp~~glD~~~~~~l~~all~ 458 (623)
.++.+.. .+|..+..++.+++|| .+++.++++++.+|. +++|| ||+|+|+.... .
T Consensus 228 tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS--kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~-------~ 297 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI--ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA-------R 297 (359)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH--HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH-------H
T ss_pred hHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH--HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH-------H
Confidence 2344321 1233334455667777 457888899999999 99999 99999997642 2
Q ss_pred HHh-cCCcEEEEEcCc
Q 006974 459 YLR-DRVGLAVVTTHY 473 (623)
Q Consensus 459 ~l~-~~~~~vii~TH~ 473 (623)
.+. ..+.++|++||.
T Consensus 298 ~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 298 EFNEVVGITGLILTKL 313 (359)
T ss_dssp HHHHHTCCCEEEEESC
T ss_pred HHHHhcCCeEEEEecC
Confidence 233 358899999995
No 96
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.29 E-value=2.2e-11 Score=119.03 Aligned_cols=140 Identities=19% Similarity=0.109 Sum_probs=85.7
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCch-h-hh-cccccccHHH--H
Q 006974 346 KVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQ-S-LE-QNLSTFSGHI--S 420 (623)
Q Consensus 346 ~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~-~-~~-~~~stfS~g~--~ 420 (623)
.+.+| ++++|+||||+|||||+++++. .......|+..........+.++...++... . .+ -.+...++++ +
T Consensus 16 gi~~G-~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 16 GFAPG-VLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp SBCTT-SEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCcCC-EEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 46788 8999999999999999999944 2222234555443112222334444444421 1 11 1233333332 2
Q ss_pred -HHHHHHHhcCC-CcEEEEeCCCCCCCHHH--------HHHHHHHHHHHHhcCCcEEEEEcCchh--------------H
Q 006974 421 -RIVDILELVSR-ESLVLIDEIGSGTDPSE--------GVALATSILQYLRDRVGLAVVTTHYAD--------------L 476 (623)
Q Consensus 421 -rl~~~~~l~~~-~~LlLLDEp~~glD~~~--------~~~l~~all~~l~~~~~~vii~TH~~~--------------l 476 (623)
.+..+.+++.+ |++||+|||++++|+.. -..+...+.+...+.++++|+++|... +
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~ 172 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTL 172 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHH
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcce
Confidence 46666667765 99999999999999743 233444344444455889999999853 4
Q ss_pred HhhccccceeeC
Q 006974 477 SCLKDKDTRFEN 488 (623)
Q Consensus 477 ~~~~~~~~~i~~ 488 (623)
..+||.++.+..
T Consensus 173 ~~~~d~vi~l~~ 184 (220)
T 2cvh_A 173 GYRCKDILRLDK 184 (220)
T ss_dssp HHTSSEEEEEEE
T ss_pred eecCcEEEEEEE
Confidence 457777766643
No 97
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.21 E-value=2.1e-11 Score=143.15 Aligned_cols=97 Identities=25% Similarity=0.284 Sum_probs=84.3
Q ss_pred HHHHHcCCch-hhhcccccccHHHH-HHHHHHHhcCCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcC
Q 006974 397 LILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRES--LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTH 472 (623)
Q Consensus 397 ~i~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~~~~--LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH 472 (623)
..+..+|+.. .+++.+++|||||+ |+.+|++++.+|+ ++||||||+||||.+...|.. ++..+++.|.|+|++||
T Consensus 446 ~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~-~L~~L~~~G~TvivVtH 524 (916)
T 3pih_A 446 EFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIK-TLKKLRDLGNTVIVVEH 524 (916)
T ss_dssp HHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHH-HHHHTTTTTCEEEEECC
T ss_pred HHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHH-HHHHHHhcCCEEEEEeC
Confidence 3566788875 47899999999999 8999999998776 999999999999999999999 67778888999999999
Q ss_pred chhHHhhcccccee------eCceEEEe
Q 006974 473 YADLSCLKDKDTRF------ENAATEFS 494 (623)
Q Consensus 473 ~~~l~~~~~~~~~i------~~g~~~~~ 494 (623)
|+++...||+++.+ .+|.+.+.
T Consensus 525 d~~~~~~aD~ii~lgpgag~~~G~iv~~ 552 (916)
T 3pih_A 525 DEEVIRNADHIIDIGPGGGTNGGRVVFQ 552 (916)
T ss_dssp CHHHHHTCSEEEEEESSSGGGCSEEEEE
T ss_pred CHHHHHhCCEEEEEcCCcccCCCEEEEe
Confidence 99977779999999 67777654
No 98
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.21 E-value=1.4e-12 Score=133.38 Aligned_cols=114 Identities=18% Similarity=0.072 Sum_probs=72.1
Q ss_pred EEEEEcCCCCCHHHHHHHH-hhhhhhh----------------hhceeecCCCCC--CccHHH--------------HHH
Q 006974 353 VVVITGPNTGGKTASMKTL-GLASLMS----------------KAGLYLPAKNHP--RLPWFD--------------LIL 399 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i-gl~~~~a----------------~~G~~vp~~~~~--~l~~~d--------------~i~ 399 (623)
.++|+||||||||||||++ |+..+.. +.-.++|+.... .++++| ..+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i 83 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI 83 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence 5799999999999999999 6664321 111345554211 111111 112
Q ss_pred HHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974 400 ADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (623)
Q Consensus 400 ~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~ 475 (623)
..+...+..+....+||+|++ |+.++++++. +++||||+.|+|+.+.. +++.+.+. .++|++.|-.+
T Consensus 84 ~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~-----~l~~L~~~-~~vI~Vi~K~D 151 (270)
T 3sop_A 84 EKYINEQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLE-----FMKHLSKV-VNIIPVIAKAD 151 (270)
T ss_dssp HHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHH-----HHHHHHTT-SEEEEEETTGG
T ss_pred HHHHHHHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHH-----HHHHHHhc-CcEEEEEeccc
Confidence 222224455667889999998 6777776553 99999999999999833 44556665 77777777654
No 99
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.19 E-value=3.4e-11 Score=140.83 Aligned_cols=96 Identities=23% Similarity=0.243 Sum_probs=84.1
Q ss_pred HHHHcCCch-hhhcccccccHHHH-HHHHHHHhcCC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974 398 ILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR--ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (623)
Q Consensus 398 i~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~~--~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~ 473 (623)
.+..+|+.. .+++.+++|||||+ |+.+|.+++.+ |.++||||||+||||.+...|.. +++.|++.|.|||++||+
T Consensus 487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~-~L~~Lr~~G~TVIvVeHd 565 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIA-TLKSMRDLGNTLIVVEHD 565 (972)
T ss_dssp HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHH-HHHHHHTTTCEEEEECCC
T ss_pred HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHH-HHHHHHhCCCEEEEEecC
Confidence 367788875 47999999999999 79999999887 48999999999999999999999 777788889999999999
Q ss_pred hhHHhhcccccee------eCceEEEe
Q 006974 474 ADLSCLKDKDTRF------ENAATEFS 494 (623)
Q Consensus 474 ~~l~~~~~~~~~i------~~g~~~~~ 494 (623)
.++...||+++.+ .+|.+.+.
T Consensus 566 l~~i~~ADrIi~LgpgaG~~gG~iv~~ 592 (972)
T 2r6f_A 566 EDTMLAADYLIDIGPGAGIHGGEVVAA 592 (972)
T ss_dssp HHHHHSCSEEEEECSSSGGGCCSEEEE
T ss_pred HHHHHhCCEEEEeCCCccCCCCEEEEe
Confidence 9876789999998 57777664
No 100
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.17 E-value=4.2e-11 Score=140.47 Aligned_cols=94 Identities=26% Similarity=0.219 Sum_probs=82.1
Q ss_pred HHHcCCch-hhhcccccccHHHH-HHHHHHHhcCC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCch
Q 006974 399 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR--ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (623)
Q Consensus 399 ~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~~--~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~ 474 (623)
+..+|+.. .+++.+++|||||+ |+.+|.+++.+ |.++||||||+||||.+...|.. +++.|++.|.|||++||+.
T Consensus 505 L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~-~L~~Lr~~G~TVIvVeHdl 583 (993)
T 2ygr_A 505 LLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIE-TLTRLRDLGNTLIVVEHDE 583 (993)
T ss_dssp HHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECCCH
T ss_pred HhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHH-HHHHHHHcCCEEEEECCCH
Confidence 66778875 47999999999999 79999999888 58999999999999999999999 7777888899999999999
Q ss_pred hHHhhcccccee------eCceEEE
Q 006974 475 DLSCLKDKDTRF------ENAATEF 493 (623)
Q Consensus 475 ~l~~~~~~~~~i------~~g~~~~ 493 (623)
++...||+++.+ .+|.+.+
T Consensus 584 ~~i~~ADrIi~Lgp~aG~~gG~iv~ 608 (993)
T 2ygr_A 584 DTIEHADWIVDIGPGAGEHGGRIVH 608 (993)
T ss_dssp HHHHTCSEEEEECSSSGGGCCSCCE
T ss_pred HHHHhCCEEEEecCccccCCCEEEE
Confidence 876789999988 4666554
No 101
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.17 E-value=5.6e-11 Score=138.41 Aligned_cols=96 Identities=22% Similarity=0.212 Sum_probs=84.6
Q ss_pred HHHHcCCchh-hhcccccccHHHH-HHHHHHHhcCCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974 398 ILADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRE--SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (623)
Q Consensus 398 i~~~ig~~~~-~~~~~stfS~g~~-rl~~~~~l~~~~--~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~ 473 (623)
.+..+|+... +++.+++||||++ |+++|.+++.+| .++||||||+||||.+...|.. +++.|++.|.|||++||+
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~-~l~~L~~~G~TVIvVeHd 440 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLS-ALENLKRGGNSLFVVEHD 440 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHH-HHHHHHTTTCEEEEECCC
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHH-HHHHHHHcCCEEEEEcCC
Confidence 4667888754 7999999999999 799999999998 5999999999999999999999 777889889999999999
Q ss_pred hhHHhhcccccee------eCceEEEe
Q 006974 474 ADLSCLKDKDTRF------ENAATEFS 494 (623)
Q Consensus 474 ~~l~~~~~~~~~i------~~g~~~~~ 494 (623)
+++...||+++.+ .+|.+.+.
T Consensus 441 l~~l~~aD~ii~lgpgaG~~~G~iv~~ 467 (842)
T 2vf7_A 441 LDVIRRADWLVDVGPEAGEKGGEILYS 467 (842)
T ss_dssp HHHHTTCSEEEEECSSSGGGCCSEEEE
T ss_pred HHHHHhCCEEEEeCCCcccCCCEEEEe
Confidence 9977789999988 56777664
No 102
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.17 E-value=4.2e-13 Score=132.85 Aligned_cols=127 Identities=13% Similarity=-0.012 Sum_probs=74.7
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhh--c----------------eeecCCCCCCccHHHHHHH--
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKA--G----------------LYLPAKNHPRLPWFDLILA-- 400 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~--G----------------~~vp~~~~~~l~~~d~i~~-- 400 (623)
++||++.+| ++++|+||||||||||+|++ |+. + ... | .|+|+.. ..|.....
T Consensus 15 ~isl~i~~G-~~~~lvGpsGsGKSTLl~~L~g~~-p-G~i~~g~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~ 87 (218)
T 1z6g_A 15 VPRGSMNNI-YPLVICGPSGVGKGTLIKKLLNEF-P-NYFYFSVSCTTRKKREKEKEGVDYYFIDK----TIFEDKLKNE 87 (218)
T ss_dssp -------CC-CCEEEECSTTSSHHHHHHHHHHHS-T-TTEEECCCEECSCCCSSCCBTTTBEECCH----HHHHHHHHTT
T ss_pred CCceecCCC-CEEEEECCCCCCHHHHHHHHHhhC-C-CcEEEeecccCCCCCcccccCCeEEECCH----HHHHHhhhcc
Confidence 889999999 99999999999999999999 655 2 110 0 1122211 01211100
Q ss_pred -----------HcCCc-hh----hh-----cccccccHHHH-HHHH-----HHHhcCCCcEEEEeCCCCCCCHHHHHHHH
Q 006974 401 -----------DIGDH-QS----LE-----QNLSTFSGHIS-RIVD-----ILELVSRESLVLIDEIGSGTDPSEGVALA 453 (623)
Q Consensus 401 -----------~ig~~-~~----~~-----~~~stfS~g~~-rl~~-----~~~l~~~~~LlLLDEp~~glD~~~~~~l~ 453 (623)
..|.. .. +. -....+|||++ |+++ ++.++.+|++++||||++++|......+.
T Consensus 88 ~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~ 167 (218)
T 1z6g_A 88 DFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQ 167 (218)
T ss_dssp CEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHH
T ss_pred chhhhhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHH
Confidence 00000 00 00 01146799999 6666 45678899999999999999988777777
Q ss_pred HHHHHHHhc------CCcEEEEEcCchh
Q 006974 454 TSILQYLRD------RVGLAVVTTHYAD 475 (623)
Q Consensus 454 ~all~~l~~------~~~~vii~TH~~~ 475 (623)
..+.....+ ..+..|+++|+.+
T Consensus 168 ~~l~~~~~~~~~~h~~~~d~iiv~~~~~ 195 (218)
T 1z6g_A 168 KRMEQLNIELHEANLLNFNLSIINDDLT 195 (218)
T ss_dssp HHHHHHHHHHHHHTTSCCSEEEECSSHH
T ss_pred HHHHHHHHHHHhhcccCCCEEEECCCHH
Confidence 655443222 4567788999865
No 103
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.17 E-value=1.1e-11 Score=124.58 Aligned_cols=122 Identities=15% Similarity=0.109 Sum_probs=72.9
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----hhhceeecCCCC-CCccHHHH-----------------
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----SKAGLYLPAKNH-PRLPWFDL----------------- 397 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----a~~G~~vp~~~~-~~l~~~d~----------------- 397 (623)
++||++.+| .+++|+|||||||||++|++ |++-.. ++...++|+... ..++..+.
T Consensus 17 ~isl~i~~g-~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 95 (245)
T 2jeo_A 17 NLYFQSMRP-FLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFD 95 (245)
T ss_dssp ------CCS-EEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTTSGGGBC
T ss_pred ceeccCCCC-EEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCCCCccccc
Confidence 899999999 99999999999999999999 543210 111224555421 11222221
Q ss_pred ------HHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Q 006974 398 ------ILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVT 470 (623)
Q Consensus 398 ------i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~ 470 (623)
.+..+ .+.....+..||+|++ |+.. ..++.+|+++|+|||....++. +.. + .+.+++++
T Consensus 96 ~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~----l~~-----~--~~~~i~v~ 161 (245)
T 2jeo_A 96 NDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE----IRD-----M--FHLRLFVD 161 (245)
T ss_dssp HHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH----HHT-----T--CSEEEEEE
T ss_pred HHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH----HHH-----h--cCeEEEEE
Confidence 11111 1223456788999998 5544 4567889999999998877753 111 1 26789999
Q ss_pred cCc-hhHHh
Q 006974 471 THY-ADLSC 478 (623)
Q Consensus 471 TH~-~~l~~ 478 (623)
||+ ..+..
T Consensus 162 th~~~~~~r 170 (245)
T 2jeo_A 162 TDSDVRLSR 170 (245)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 997 33443
No 104
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.16 E-value=9.7e-11 Score=124.15 Aligned_cols=131 Identities=16% Similarity=0.160 Sum_probs=79.4
Q ss_pred cccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhh----c--eeecCCCCCCccHHHHHHHHcCCch-hhhccc---
Q 006974 344 DIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKA----G--LYLPAKNHPRLPWFDLILADIGDHQ-SLEQNL--- 412 (623)
Q Consensus 344 ~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~----G--~~vp~~~~~~l~~~d~i~~~ig~~~-~~~~~~--- 412 (623)
...+++| ++++|+||||||||||++++ +.+...... | .|+-......-.-+..++...+... .+..++
T Consensus 125 ~ggi~~G-~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~ 203 (349)
T 1pzn_A 125 GGGIETQ-AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVA 203 (349)
T ss_dssp TSSEESS-EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEE
T ss_pred cCCCCCC-eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEE
Confidence 4678899 99999999999999999999 443211112 2 4554443111112233444444321 121111
Q ss_pred ccc-cHHHH-HHHHHHHhc-------CCCcEEEEeCCCCCCCHHH------------HHHHHHHHHHHHhcCCcEEEEEc
Q 006974 413 STF-SGHIS-RIVDILELV-------SRESLVLIDEIGSGTDPSE------------GVALATSILQYLRDRVGLAVVTT 471 (623)
Q Consensus 413 stf-S~g~~-rl~~~~~l~-------~~~~LlLLDEp~~glD~~~------------~~~l~~all~~l~~~~~~vii~T 471 (623)
..+ |.++. .+..+..++ .+|++||+|||++++|+.. ...+...+.....+.++++|+++
T Consensus 204 ~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~ 283 (349)
T 1pzn_A 204 RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTN 283 (349)
T ss_dssp ECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEc
Confidence 112 44555 455565555 6899999999999999852 23344434444445689999999
Q ss_pred Cchh
Q 006974 472 HYAD 475 (623)
Q Consensus 472 H~~~ 475 (623)
|...
T Consensus 284 h~~~ 287 (349)
T 1pzn_A 284 QVQA 287 (349)
T ss_dssp ECC-
T ss_pred cccc
Confidence 9864
No 105
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.15 E-value=1.5e-13 Score=134.34 Aligned_cols=123 Identities=15% Similarity=0.072 Sum_probs=84.9
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeecCCCC----CCccH------------------HHHHHHHcCC
Q 006974 348 ECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNH----PRLPW------------------FDLILADIGD 404 (623)
Q Consensus 348 ~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp~~~~----~~l~~------------------~d~i~~~ig~ 404 (623)
.+| .+++|+|||||||||++|++ |++.. + ..++|++.. ..++. +..++..++.
T Consensus 4 ~~~-~~i~i~G~~GsGKSTl~~~l~~~~~~--~-i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (211)
T 3asz_A 4 PKP-FVIGIAGGTASGKTTLAQALARTLGE--R-VALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLR 79 (211)
T ss_dssp -CC-EEEEEEESTTSSHHHHHHHHHHHHGG--G-EEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHT
T ss_pred CCc-EEEEEECCCCCCHHHHHHHHHHHhCC--C-eEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHc
Confidence 467 89999999999999999999 65432 1 224444321 11111 2334455555
Q ss_pred chhhhcccccccHHHH-----HHHHHHHhcCCCcEEEEeCCCCC-------CCHHHHHHHHHHHHHHHhcCCcEEEEEcC
Q 006974 405 HQSLEQNLSTFSGHIS-----RIVDILELVSRESLVLIDEIGSG-------TDPSEGVALATSILQYLRDRVGLAVVTTH 472 (623)
Q Consensus 405 ~~~~~~~~stfS~g~~-----rl~~~~~l~~~~~LlLLDEp~~g-------lD~~~~~~l~~all~~l~~~~~~vii~TH 472 (623)
.+.+..+...+|+|++ ++..+..++.+|.++++|||+++ +|+.....+...+.+...++|.++++++|
T Consensus 80 ~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~ 159 (211)
T 3asz_A 80 GLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVA 159 (211)
T ss_dssp TCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred CCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 5666777888998864 23344456777888888999999 89988888888666655666888888899
Q ss_pred ch
Q 006974 473 YA 474 (623)
Q Consensus 473 ~~ 474 (623)
+.
T Consensus 160 ~~ 161 (211)
T 3asz_A 160 QY 161 (211)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 106
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.15 E-value=7.3e-12 Score=133.04 Aligned_cols=124 Identities=15% Similarity=0.068 Sum_probs=72.7
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeecCCCCCCccHHHHHHHHcC-CchhhhcccccccHHHHHHH
Q 006974 346 KVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIG-DHQSLEQNLSTFSGHISRIV 423 (623)
Q Consensus 346 ~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig-~~~~~~~~~stfS~g~~rl~ 423 (623)
...+| .+++|+|||||||||||+++ |++.... .|..+-......+..-. ..+ ..+ .......++.. -+
T Consensus 119 ~~~~~-g~i~I~GptGSGKTTlL~~l~g~~~~~~-~~~i~t~ed~~e~~~~~----~~~~v~q-~~~~~~~~~~~---~~ 188 (356)
T 3jvv_A 119 SDVPR-GLVLVTGPTGSGKSTTLAAMLDYLNNTK-YHHILTIEDPIEFVHES----KKCLVNQ-REVHRDTLGFS---EA 188 (356)
T ss_dssp HHCSS-EEEEEECSTTSCHHHHHHHHHHHHHHHC-CCEEEEEESSCCSCCCC----SSSEEEE-EEBTTTBSCHH---HH
T ss_pred HhCCC-CEEEEECCCCCCHHHHHHHHHhcccCCC-CcEEEEccCcHHhhhhc----cccceee-eeeccccCCHH---HH
Confidence 55677 79999999999999999998 6655431 11111100001111000 000 000 00011112211 16
Q ss_pred HHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceee
Q 006974 424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 487 (623)
Q Consensus 424 ~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~ 487 (623)
++.++..+|+++|+|||+ |+.....+.. +...|.++|+|||+.+....+++...+.
T Consensus 189 La~aL~~~PdvillDEp~---d~e~~~~~~~-----~~~~G~~vl~t~H~~~~~~~~dRli~l~ 244 (356)
T 3jvv_A 189 LRSALREDPDIILVGEMR---DLETIRLALT-----AAETGHLVFGTLHTTSAAKTIDRVVDVF 244 (356)
T ss_dssp HHHHTTSCCSEEEESCCC---SHHHHHHHHH-----HHHTTCEEEEEESCSSHHHHHHHHHHTS
T ss_pred HHHHhhhCcCEEecCCCC---CHHHHHHHHH-----HHhcCCEEEEEEccChHHHHHHHHhhhc
Confidence 677789999999999998 6554333322 3445889999999988767777776553
No 107
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.12 E-value=3e-10 Score=112.65 Aligned_cols=129 Identities=15% Similarity=0.172 Sum_probs=71.6
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHHhhhhhh-------hhhceeecCCCCCCccHHHHHHHHcCCch-hhhcc---ccc
Q 006974 346 KVECETRVVVITGPNTGGKTASMKTLGLASLM-------SKAGLYLPAKNHPRLPWFDLILADIGDHQ-SLEQN---LST 414 (623)
Q Consensus 346 ~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~-------a~~G~~vp~~~~~~l~~~d~i~~~ig~~~-~~~~~---~st 414 (623)
-+++| ++++|+||||+|||||+++++....+ .....|+.........-+..++..+|... .+..+ ...
T Consensus 20 gi~~G-~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 98 (243)
T 1n0w_A 20 GIETG-SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARA 98 (243)
T ss_dssp SEETT-SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCcCC-eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEec
Confidence 36678 89999999999999999999432222 11123443332111112334555666432 11111 123
Q ss_pred ccHHHH-H-HHHHHHh--cCCCcEEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974 415 FSGHIS-R-IVDILEL--VSRESLVLIDEIGSGTDPS-------E-----GVALATSILQYLRDRVGLAVVTTHYAD 475 (623)
Q Consensus 415 fS~g~~-r-l~~~~~l--~~~~~LlLLDEp~~glD~~-------~-----~~~l~~all~~l~~~~~~vii~TH~~~ 475 (623)
++..+. + +..+... ..+|++|++|||++.+|+. . ...+...+.....+.+++||+++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~ 175 (243)
T 1n0w_A 99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA 175 (243)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC----
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee
Confidence 444443 2 2223332 3689999999999999985 2 233444455544556899999999754
No 108
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.11 E-value=3.2e-12 Score=123.89 Aligned_cols=129 Identities=14% Similarity=0.041 Sum_probs=72.1
Q ss_pred eEEEEEcCCCCCHHHHHHHH-hhhhhhhhhc------------------eeecCCCCCCccHHHHHHHHcCC--c-----
Q 006974 352 RVVVITGPNTGGKTASMKTL-GLASLMSKAG------------------LYLPAKNHPRLPWFDLILADIGD--H----- 405 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G------------------~~vp~~~~~~l~~~d~i~~~ig~--~----- 405 (623)
++++|+||||+|||||++++ |++. . .| .++++....... .+.+++. .
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~-~--~Gi~~~g~~~~~~~~~~~~ig~~~~~~~g~~~----~l~~~~~~~~~~~~~ 74 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK-S--SGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRG----PLSRVGLEPPPGKRE 74 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH-H--TTCCCEEEECCEEETTSSEEEEEEEETTSCEE----EEEECCCCCCSSSCC
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc-c--CCEEEcCEecchhHhhhceEEEEEEeccccee----hhhcccccCCccccc
Confidence 68999999999999999999 5553 1 12 122221100000 0011111 0
Q ss_pred hhhhcccccccHHHH-HHHHHH----HhcCCCcEEEEeC--CCCCCCHHHHHHHHHHHHHHHhcCCcEEE---EEcCchh
Q 006974 406 QSLEQNLSTFSGHIS-RIVDIL----ELVSRESLVLIDE--IGSGTDPSEGVALATSILQYLRDRVGLAV---VTTHYAD 475 (623)
Q Consensus 406 ~~~~~~~stfS~g~~-rl~~~~----~l~~~~~LlLLDE--p~~glD~~~~~~l~~all~~l~~~~~~vi---i~TH~~~ 475 (623)
..+.+....+|++++ .+..+. +.+.+|+++|||| |+..+|+....+|.. .+.....++| .+||+..
T Consensus 75 ~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~----~l~~~~~~ilgti~vsh~~~ 150 (189)
T 2i3b_A 75 CRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQ----TLSTPGTIILGTIPVPKGKP 150 (189)
T ss_dssp EESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHH----HHHCSSCCEEEECCCCCSSC
T ss_pred cccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHH----HHhCCCcEEEEEeecCCCCc
Confidence 123344556888887 443332 2578999999999 787888875544444 3333333332 3348864
Q ss_pred HHhhccccceeeCceEE
Q 006974 476 LSCLKDKDTRFENAATE 492 (623)
Q Consensus 476 l~~~~~~~~~i~~g~~~ 492 (623)
..+++++....++.+.
T Consensus 151 -~~~vd~i~~~~~~~i~ 166 (189)
T 2i3b_A 151 -LALVEEIRNRKDVKVF 166 (189)
T ss_dssp -CTTHHHHHTTCCSEEE
T ss_pred -hHHHHHHeecCCcEEE
Confidence 2344544445566554
No 109
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.09 E-value=1.9e-10 Score=107.04 Aligned_cols=88 Identities=16% Similarity=0.246 Sum_probs=60.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHH
Q 006974 349 CETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILE 427 (623)
Q Consensus 349 ~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~ 427 (623)
+| +.++|+||||+|||||++++ +.+........|++....... .
T Consensus 35 ~g-~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~----------------------------------~ 79 (149)
T 2kjq_A 35 HG-QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT----------------------------------D 79 (149)
T ss_dssp CC-SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC----------------------------------G
T ss_pred CC-CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH----------------------------------H
Confidence 67 89999999999999999999 333321111234443321100 2
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcE-EEEEcCc
Q 006974 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGL-AVVTTHY 473 (623)
Q Consensus 428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~-vii~TH~ 473 (623)
++.++++|+||||+. +++.....+.. +++.+.+.+.+ +|++||.
T Consensus 80 ~~~~~~lLilDE~~~-~~~~~~~~l~~-li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 80 AAFEAEYLAVDQVEK-LGNEEQALLFS-IFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGGGCSEEEEESTTC-CCSHHHHHHHH-HHHHHHHHTCCEEEEEESS
T ss_pred HHhCCCEEEEeCccc-cChHHHHHHHH-HHHHHHHcCCcEEEEECCC
Confidence 345799999999998 55555666766 77777777777 8889986
No 110
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.01 E-value=5.5e-10 Score=124.41 Aligned_cols=79 Identities=25% Similarity=0.314 Sum_probs=69.8
Q ss_pred hcccccc-cHHHH-HHHHHHHhcCCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccc
Q 006974 409 EQNLSTF-SGHIS-RIVDILELVSRE--SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDT 484 (623)
Q Consensus 409 ~~~~stf-S~g~~-rl~~~~~l~~~~--~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~ 484 (623)
.++++.| |||++ |++++++++.+| +++||||||+|+|+.....+.. ++..+.+ +.+||++||++++..+||+++
T Consensus 391 ~~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~-~l~~~~~-~~~vi~itH~~~~~~~~d~~~ 468 (517)
T 4ad8_A 391 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAE-QLSRLAD-TRQVLVVTHLAQIAARAHHHY 468 (517)
T ss_dssp CCBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHH-HHHHHHH-HSEEEEECCCHHHHHHSSEEE
T ss_pred cccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHH-HHHHHhC-CCEEEEEecCHHHHHhCCEEE
Confidence 3678888 99999 899999999999 9999999999999999999999 5555666 789999999999888899998
Q ss_pred eeeCc
Q 006974 485 RFENA 489 (623)
Q Consensus 485 ~i~~g 489 (623)
.+.++
T Consensus 469 ~~~~~ 473 (517)
T 4ad8_A 469 KVEKQ 473 (517)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 88654
No 111
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.01 E-value=3.1e-11 Score=125.34 Aligned_cols=128 Identities=15% Similarity=0.119 Sum_probs=60.2
Q ss_pred ceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hh-hhhhh---------------hhceeecCCCCC
Q 006974 330 GSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GL-ASLMS---------------KAGLYLPAKNHP 390 (623)
Q Consensus 330 ~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl-~~~~a---------------~~G~~vp~~~~~ 390 (623)
.||++.|+++.+ +++|.+ +|+||||+|||||++++ |. +.+.. ..-.++++....
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I-------~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~ 74 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL-------MVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGV 74 (301)
T ss_dssp ----------------CEEE-------EEEEETTSSHHHHHHHHHC------------------------CEEEEC---C
T ss_pred CCCcceECCEEEEcCCCEEE-------EEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCc
Confidence 478889987766 666654 89999999999999997 54 22110 001122222110
Q ss_pred --CccHHHH---------------HHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCC-CCHHHHHH
Q 006974 391 --RLPWFDL---------------ILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG-TDPSEGVA 451 (623)
Q Consensus 391 --~l~~~d~---------------i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~g-lD~~~~~~ 451 (623)
.+.++|. +... +.+..+..+..+|+|++ ++..++++ -+|++|||+++ +|+.+.
T Consensus 75 ~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~~~~~~~~~sgg~rqrv~~ara~----~ll~ldePt~~~Ld~~~~-- 146 (301)
T 2qnr_A 75 KLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQFERYLHDESGLNRRHIIDNRVH----CCFYFISPFGHGLKPLDV-- 146 (301)
T ss_dssp CEEEEEEEEC-----------CTTHHHH--HHHHHHHHHHHHTSSCCTTCCCCCCC----EEEEEECSSSSSCCHHHH--
T ss_pred ccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHHHHHHHHHhCHHhhhhhhhhhhh----heeeeecCcccCCCHHHH--
Confidence 0111110 0000 01112255666677666 32222222 29999999884 999873
Q ss_pred HHHHHHHHHhcC-CcEEEEEcCchh
Q 006974 452 LATSILQYLRDR-VGLAVVTTHYAD 475 (623)
Q Consensus 452 l~~all~~l~~~-~~~vii~TH~~~ 475 (623)
. ++..+... +.++|+++||+.
T Consensus 147 --~-~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 147 --A-FMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp --H-HHHHHTTTSCEEEEECCGGGS
T ss_pred --H-HHHHHHhcCCEEEEEEeCCCC
Confidence 2 44455543 678899999963
No 112
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.99 E-value=2.7e-10 Score=110.47 Aligned_cols=133 Identities=15% Similarity=0.035 Sum_probs=78.3
Q ss_pred EEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHH-hhh-----hhhhh----h-------ceeecC-CC
Q 006974 327 MTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLA-----SLMSK----A-------GLYLPA-KN 388 (623)
Q Consensus 327 l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~-----~~~a~----~-------G~~vp~-~~ 388 (623)
++++|+++.|+. .+-.+|.+.+| ..++|+|+||+|||||++.+ |.. ..... . +..+-. .|
T Consensus 4 l~~~~~~~~~~~-~~l~~~~~~~~-~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G 81 (210)
T 1pui_A 4 LNYQQTHFVMSA-PDIRHLPSDTG-IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPG 81 (210)
T ss_dssp -------CEEEE-SSGGGSSCSCS-EEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCC
T ss_pred hhhhhhhheeec-CCHhHCCCCCC-cEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcC
Confidence 678999999974 34233888999 89999999999999999998 443 11000 0 000000 00
Q ss_pred CC-------------------------------------CccHHH----HHHHHcCCchh-hhcccccccHHHH-H-HHH
Q 006974 389 HP-------------------------------------RLPWFD----LILADIGDHQS-LEQNLSTFSGHIS-R-IVD 424 (623)
Q Consensus 389 ~~-------------------------------------~l~~~d----~i~~~ig~~~~-~~~~~stfS~g~~-r-l~~ 424 (623)
.. .....+ .++...+.... +..+...+|+|++ + +..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~ 161 (210)
T 1pui_A 82 YGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNM 161 (210)
T ss_dssp CC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred CcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHH
Confidence 00 000000 11122232221 2455677899987 4 567
Q ss_pred HHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 006974 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR 461 (623)
Q Consensus 425 ~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~ 461 (623)
+.+++.++.++++|||++++|+.....+...+.+.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 162 VREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 7778888888899999999999999999986665543
No 113
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.97 E-value=1.4e-09 Score=103.86 Aligned_cols=76 Identities=16% Similarity=0.113 Sum_probs=63.2
Q ss_pred hcccccccHHHH-HHHHHHHhc----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcccc
Q 006974 409 EQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKD 483 (623)
Q Consensus 409 ~~~~stfS~g~~-rl~~~~~l~----~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~ 483 (623)
.+.++.||||++ +++++++++ .+|+++|||||++|||+.....+.. ++..+.+ +.++|++||+..+..+|+++
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~-~l~~~~~-~~~~ivith~~~~~~~ad~i 136 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVAD-LIKESSK-ESQFIVITLRDVMMANADKI 136 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH-HHHHHTT-TSEEEEECSCHHHHTTCSEE
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHH-HHHHhcc-CCEEEEEEecHHHHHhCCEE
Confidence 467789999999 788888875 5679999999999999999999999 5555554 46889999998887889988
Q ss_pred cee
Q 006974 484 TRF 486 (623)
Q Consensus 484 ~~i 486 (623)
+.+
T Consensus 137 ~~v 139 (173)
T 3kta_B 137 IGV 139 (173)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 114
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.96 E-value=1.1e-10 Score=132.54 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=37.7
Q ss_pred cCCCcEEEEeCC------CCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchhH
Q 006974 429 VSRESLVLIDEI------GSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADL 476 (623)
Q Consensus 429 ~~~~~LlLLDEp------~~glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~l 476 (623)
...|+|+|+||| |+|+|+.....+...+.+++.+. +.+++++||+.++
T Consensus 144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~ 198 (608)
T 3szr_A 144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDI 198 (608)
T ss_dssp SSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCT
T ss_pred CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchh
Confidence 356899999999 99999999999988666655544 5577899999763
No 115
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.93 E-value=2e-10 Score=124.37 Aligned_cols=134 Identities=13% Similarity=0.094 Sum_probs=68.0
Q ss_pred CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhh---------------ceeecC
Q 006974 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKA---------------GLYLPA 386 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~---------------G~~vp~ 386 (623)
+.+.++||+++|++..+ +++|.+ +|+||||+|||||++++ |+..+.... ..++++
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf~I-------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q 82 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEFTL-------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIK 82 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCEEE-------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC--
T ss_pred CcEEEEecceeECCEEEecCCCEEE-------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEe
Confidence 35788999999987666 777654 89999999999999999 333210000 011111
Q ss_pred CCCC--CccHHHHHHHHcCCchhhh-----cc-----cccccHHHH-HHHHHHHhcCCCc---EEEEeCCC-CCCCHHHH
Q 006974 387 KNHP--RLPWFDLILADIGDHQSLE-----QN-----LSTFSGHIS-RIVDILELVSRES---LVLIDEIG-SGTDPSEG 449 (623)
Q Consensus 387 ~~~~--~l~~~d~i~~~ig~~~~~~-----~~-----~stfS~g~~-rl~~~~~l~~~~~---LlLLDEp~-~glD~~~~ 449 (623)
.... .+.++|. +|.....+ .. -..|+.+++ ++.++++++.+|. +|++|||| .|+|+.+.
T Consensus 83 ~~~~~~~Ltv~Dt----~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~ 158 (418)
T 2qag_C 83 EGGVQLLLTIVDT----PGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI 158 (418)
T ss_dssp ----CEEEEEEEC----C-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH
T ss_pred cCCcccceeeeec----hhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH
Confidence 1100 0111110 01110000 00 012233333 3445566778899 99999999 69999884
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974 450 VALATSILQYLRDRVGLAVVTTHYAD 475 (623)
Q Consensus 450 ~~l~~all~~l~~~~~~vii~TH~~~ 475 (623)
. +++.+.. +..+|++.|-.+
T Consensus 159 ~-----~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 159 E-----FMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp H-----HHHHHTT-TSEEEEEEESTT
T ss_pred H-----HHHHHhc-cCcEEEEEEccc
Confidence 2 3445554 566666655544
No 116
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.93 E-value=1.8e-09 Score=115.33 Aligned_cols=121 Identities=12% Similarity=0.132 Sum_probs=71.0
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeecCCCCCCccHHHHHHHHcC-Cch-hhhcccccccHHHHHH
Q 006974 346 KVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIG-DHQ-SLEQNLSTFSGHISRI 422 (623)
Q Consensus 346 ~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig-~~~-~~~~~~stfS~g~~rl 422 (623)
.+.+| .+++|+|||||||||+|+++ |++... ..|..+-......+.+ . ..++ ..+ .+.....+|+ .
T Consensus 132 ~~~~g-~~i~ivG~~GsGKTTll~~l~~~~~~~-~~g~I~~~e~~~e~~~-~---~~~~~v~Q~~~g~~~~~~~-----~ 200 (372)
T 2ewv_A 132 CHRKM-GLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIEYVF-K---HKKSIVNQREVGEDTKSFA-----D 200 (372)
T ss_dssp TTSSS-EEEEEECSSSSSHHHHHHHHHHHHHHH-SCCEEEEEESSCCSCC-C---CSSSEEEEEEBTTTBSCSH-----H
T ss_pred hhcCC-CEEEEECCCCCCHHHHHHHHHhhcCcC-CCcEEEEecccHhhhh-c---cCceEEEeeecCCCHHHHH-----H
Confidence 36788 89999999999999999999 555432 0222211111111100 0 0000 000 0111334564 3
Q ss_pred HHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccce
Q 006974 423 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTR 485 (623)
Q Consensus 423 ~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~ 485 (623)
.++.++..+|+++++|||+ |+..... +++. ...|.++++|+|+.+....+++...
T Consensus 201 ~l~~~L~~~pd~illdE~~---d~e~~~~----~l~~-~~~g~~vi~t~H~~~~~~~~~rl~~ 255 (372)
T 2ewv_A 201 ALRAALREDPDVIFVGEMR---DLETVET----ALRA-AETGHLVFGTLHTNTAIDTIHRIVD 255 (372)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHH----HHHH-HTTTCEEEECCCCCSHHHHHHHHHH
T ss_pred HHHHHhhhCcCEEEECCCC---CHHHHHH----HHHH-HhcCCEEEEEECcchHHHHHHHHHH
Confidence 4555677899999999999 7655332 2332 2457899999999777666666543
No 117
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.90 E-value=1.5e-10 Score=123.32 Aligned_cols=143 Identities=9% Similarity=-0.030 Sum_probs=79.4
Q ss_pred cccccccC--CceEEEEEcCCCCCHHHHHHHH-hhhhhhh--hhce-eec----CCCC-CCccHHHHHHH----------
Q 006974 342 PIDIKVEC--ETRVVVITGPNTGGKTASMKTL-GLASLMS--KAGL-YLP----AKNH-PRLPWFDLILA---------- 400 (623)
Q Consensus 342 ~i~l~l~~--g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--~~G~-~vp----~~~~-~~l~~~d~i~~---------- 400 (623)
.+++.+.+ | +.++|+||||||||||+|+| |++.+.. ..|. +++ .... ....-+.++..
T Consensus 160 ~v~~~v~~~lg-~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~~~ 238 (365)
T 1lw7_A 160 FIPKEARPFFA-KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDYAV 238 (365)
T ss_dssp GSCTTTGGGTC-EEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHhhh-CeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHHH
Confidence 57778888 8 89999999999999999999 6654332 0011 111 0000 00000111110
Q ss_pred Hc------CCchhhhcccccccHHHH-HHHHHHH-hcCCCcEEEEeC---CC------CCCCHHHHHHHHHHHHHHHhcC
Q 006974 401 DI------GDHQSLEQNLSTFSGHIS-RIVDILE-LVSRESLVLIDE---IG------SGTDPSEGVALATSILQYLRDR 463 (623)
Q Consensus 401 ~i------g~~~~~~~~~stfS~g~~-rl~~~~~-l~~~~~LlLLDE---p~------~glD~~~~~~l~~all~~l~~~ 463 (623)
.+ +..+.....+...|++.+ +..++.. ...+|+++|||| |+ .++|+..+..++.++.+.+.+.
T Consensus 239 t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~ 318 (365)
T 1lw7_A 239 RHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKY 318 (365)
T ss_dssp HHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGG
T ss_pred hccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHc
Confidence 00 011111222223344444 3222222 346899999999 65 5889999999999776666666
Q ss_pred CcEEEEEcCchhHHhhccccce
Q 006974 464 VGLAVVTTHYADLSCLKDKDTR 485 (623)
Q Consensus 464 ~~~vii~TH~~~l~~~~~~~~~ 485 (623)
+.++|++||......+++....
T Consensus 319 ~~~ililde~~~~~r~~~~i~~ 340 (365)
T 1lw7_A 319 KVPYIEIESPSYLDRYNQVKAV 340 (365)
T ss_dssp GCCCEEEECSSHHHHHHHHHHH
T ss_pred CCCEEEeCCCCHHHHHHHHHHH
Confidence 7889999987555555554433
No 118
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.81 E-value=1.5e-08 Score=109.20 Aligned_cols=127 Identities=17% Similarity=0.134 Sum_probs=72.1
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHHhhhhhhh-------hhceeecCCCCCCccHHHHHHHHcCCch-hhhcc---ccc
Q 006974 346 KVECETRVVVITGPNTGGKTASMKTLGLASLMS-------KAGLYLPAKNHPRLPWFDLILADIGDHQ-SLEQN---LST 414 (623)
Q Consensus 346 ~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a-------~~G~~vp~~~~~~l~~~d~i~~~ig~~~-~~~~~---~st 414 (623)
-+.+| ++++|+||||+|||||++++++..... ....|+-......-..+..+..++|... .+..+ ...
T Consensus 174 GI~~G-ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~ 252 (400)
T 3lda_A 174 GVETG-SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARA 252 (400)
T ss_dssp SEETT-SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CcCCC-cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEecc
Confidence 35678 899999999999999999774332221 1123444332111112344566677532 11111 122
Q ss_pred ccHHH-H-HHHHHHH--hcCCCcEEEEeCCCCCCCHHHH------------HHHHHHHHHHHhcCCcEEEEEcCc
Q 006974 415 FSGHI-S-RIVDILE--LVSRESLVLIDEIGSGTDPSEG------------VALATSILQYLRDRVGLAVVTTHY 473 (623)
Q Consensus 415 fS~g~-~-rl~~~~~--l~~~~~LlLLDEp~~glD~~~~------------~~l~~all~~l~~~~~~vii~TH~ 473 (623)
++... . .+..+.. ...+|++|++|||++.+++... ..+...+.+..++.+++||++||.
T Consensus 253 ~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 253 YNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 33322 2 2322322 2358999999999999986432 344553444444568999999998
No 119
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.78 E-value=3.8e-09 Score=114.22 Aligned_cols=143 Identities=15% Similarity=0.132 Sum_probs=85.7
Q ss_pred EEEceeeeecCCccc-cccccccCCceE--EEEEcCCCCCHHHHHHHH-hhhh---hhh--------hhceeecCCCCC-
Q 006974 327 MTVGSLSKGISDFPV-PIDIKVECETRV--VVITGPNTGGKTASMKTL-GLAS---LMS--------KAGLYLPAKNHP- 390 (623)
Q Consensus 327 l~~~~l~~~y~~~~v-~i~l~l~~g~~~--~~I~GpNgsGKSTlLk~i-gl~~---~~a--------~~G~~vp~~~~~- 390 (623)
+++.+ +++|++.++ +++|++.+| .+ ++|+||||+||||||++| |+.. ... ....++|+....
T Consensus 17 l~~~~-~~~y~~~~L~~vsl~i~~G-ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~ 94 (427)
T 2qag_B 17 VPLAG-HVGFDSLPDQLVNKSVSQG-FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVR 94 (427)
T ss_dssp CCCCC-CC-CC--CHHHHHHSCC-C-CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CE
T ss_pred EEEee-EEEECCeecCCCceEecCC-CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccc
Confidence 44555 778876546 899999999 89 999999999999999999 6531 000 112345554210
Q ss_pred ---------Ccc------------------HHHHHHHHc-CCchh----hhcc----c-------ccccHHHHHHHHHHH
Q 006974 391 ---------RLP------------------WFDLILADI-GDHQS----LEQN----L-------STFSGHISRIVDILE 427 (623)
Q Consensus 391 ---------~l~------------------~~d~i~~~i-g~~~~----~~~~----~-------stfS~g~~rl~~~~~ 427 (623)
.++ -++.++... +.... .+.. + ..++.. .+.++..
T Consensus 95 ~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~--Dieilk~ 172 (427)
T 2qag_B 95 LKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSL--DLVTMKK 172 (427)
T ss_dssp EEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHH--HHHHHHH
T ss_pred cccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHH--HHHHHHH
Confidence 010 011222222 22110 0111 1 122222 2555566
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (623)
Q Consensus 428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~ 473 (623)
+..+.+++++|+|+..+.+.+...+...+.+.+...|..++.+|.+
T Consensus 173 L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 173 LDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp TCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 6688999999999999999999999887777788888888877765
No 120
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.78 E-value=4.9e-09 Score=103.76 Aligned_cols=118 Identities=11% Similarity=0.103 Sum_probs=62.2
Q ss_pred ccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh--hhhhcee---ecCCCC-CCcc-------HHHHHHHHcCCchhhhc
Q 006974 345 IKVECETRVVVITGPNTGGKTASMKTL-GLASL--MSKAGLY---LPAKNH-PRLP-------WFDLILADIGDHQSLEQ 410 (623)
Q Consensus 345 l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~--~a~~G~~---vp~~~~-~~l~-------~~d~i~~~ig~~~~~~~ 410 (623)
-.+++| ++++|+||||||||||+|++ |+..+ ..-...+ .|..+. ..+. .|......-...+.+.-
T Consensus 11 ~~~~~G-~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 11 HHMAQG-TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp ----CC-CEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred ccCCCC-cEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 356788 99999999999999999999 66542 1100001 010000 0011 12221110000111110
Q ss_pred ccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH
Q 006974 411 NLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL 476 (623)
Q Consensus 411 ~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l 476 (623)
...+.|--+ ..+...+..++++||| +|+.....+...+. .+.+|+++||+.+.
T Consensus 90 -~~~~yg~~~--~~v~~~l~~G~illLD-----LD~~~~~~i~~~l~-----~~~tI~i~th~~~~ 142 (219)
T 1s96_A 90 -FGNYYGTSR--EAIEQVLATGVDVFLD-----IDWQGAQQIRQKMP-----HARSIFILPPSKIE 142 (219)
T ss_dssp -TTEEEEEEH--HHHHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-----TCEEEEEECSSHHH
T ss_pred -HhccCCCCH--HHHHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-----CCEEEEEECCCHHH
Confidence 011111111 1233345568999999 99999988887432 47899999999773
No 121
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.78 E-value=6.7e-10 Score=104.43 Aligned_cols=55 Identities=13% Similarity=0.054 Sum_probs=45.1
Q ss_pred EceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCcc
Q 006974 329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP 393 (623)
Q Consensus 329 ~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~ 393 (623)
..++++.|++..+ ++||++.+| ++++|+||||||||||+|++ +|.. |..+...++
T Consensus 10 ~~~~~~~~g~~~~l~~vsl~i~~G-e~v~L~G~nGaGKTTLlr~l--------~g~l-~~~G~V~~~ 66 (158)
T 1htw_A 10 DEFSMLRFGKKFAEILLKLHTEKA-IMVYLNGDLGAGKTTLTRGM--------LQGI-GHQGNVKSP 66 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCSSC-EEEEEECSTTSSHHHHHHHH--------HHHT-TCCSCCCCC
T ss_pred CHHHHHHHHHHHHHhccccccCCC-CEEEEECCCCCCHHHHHHHH--------HHhC-CCCCeEEEC
Confidence 4567788876555 889999999 99999999999999999999 7766 776654444
No 122
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.77 E-value=3.3e-09 Score=110.20 Aligned_cols=116 Identities=14% Similarity=0.115 Sum_probs=66.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------------------------hh-ceeecCCCCCCcc---HHHHHH
Q 006974 349 CETRVVVITGPNTGGKTASMKTL-GLASLMS------------------------KA-GLYLPAKNHPRLP---WFDLIL 399 (623)
Q Consensus 349 ~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------------------------~~-G~~vp~~~~~~l~---~~d~i~ 399 (623)
+| ++++|+|||||||||+++.+ |++.+.. +. ..++++.. ...+ .++++.
T Consensus 101 ~g-~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~-~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KG-RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPE-GTDSAALAYDAVQ 178 (304)
T ss_dssp SS-SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCT-TCCHHHHHHHHHH
T ss_pred CC-eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCC-CCCHHHHHHHHHH
Confidence 46 89999999999999999999 5554311 11 12455543 2222 223332
Q ss_pred H---H---------cCCchhhhcccccccHHHHHHHHHHHhcCCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCc
Q 006974 400 A---D---------IGDHQSLEQNLSTFSGHISRIVDILELVSRES--LVLIDEIGSGTDPSEGVALATSILQYLRDRVG 465 (623)
Q Consensus 400 ~---~---------ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~--LlLLDEp~~glD~~~~~~l~~all~~l~~~~~ 465 (623)
. . .|..+.....++.+| .++++++++++.+|. ++.|| |+++.+ +...+..+....+.
T Consensus 179 ~~~~~~~d~~llDt~G~~~~~~~~~~eLs--~~r~~iaRal~~~P~~~lLvLD-a~t~~~------~~~~~~~~~~~~~~ 249 (304)
T 1rj9_A 179 AMKARGYDLLFVDTAGRLHTKHNLMEELK--KVKRAIAKADPEEPKEVWLVLD-AVTGQN------GLEQAKKFHEAVGL 249 (304)
T ss_dssp HHHHHTCSEEEECCCCCCTTCHHHHHHHH--HHHHHHHHHCTTCCSEEEEEEE-TTBCTH------HHHHHHHHHHHHCC
T ss_pred HHHhCCCCEEEecCCCCCCchHHHHHHHH--HHHHHHHHhhcCCCCeEEEEEc-HHHHHH------HHHHHHHHHHHcCC
Confidence 1 0 122222223334444 236778888999999 55566 454443 33322222223378
Q ss_pred EEEEEcCchh
Q 006974 466 LAVVTTHYAD 475 (623)
Q Consensus 466 ~vii~TH~~~ 475 (623)
++|++||+.+
T Consensus 250 t~iivTh~d~ 259 (304)
T 1rj9_A 250 TGVIVTKLDG 259 (304)
T ss_dssp SEEEEECTTS
T ss_pred cEEEEECCcc
Confidence 9999999854
No 123
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.74 E-value=1.8e-08 Score=109.49 Aligned_cols=78 Identities=13% Similarity=0.072 Sum_probs=65.9
Q ss_pred hcccccccHHHH-HHHHHHHhc----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcccc
Q 006974 409 EQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKD 483 (623)
Q Consensus 409 ~~~~stfS~g~~-rl~~~~~l~----~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~ 483 (623)
.++++.|||||+ +++++++++ .+|+++|||||+++||+.....+.. ++..+...+.++|++||+..+...|+++
T Consensus 328 ~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~-~l~~~~~~~~~~ii~th~~~~~~~~d~~ 406 (430)
T 1w1w_A 328 FKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAA-YIRRHRNPDLQFIVISLKNTMFEKSDAL 406 (430)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHH-HHHHHCBTTBEEEEECSCHHHHTTCSEE
T ss_pred ccccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHH-HHHHHhcCCCEEEEEECCHHHHHhCCEE
Confidence 356789999999 788888887 6899999999999999999999998 4555655578999999998877889888
Q ss_pred ceee
Q 006974 484 TRFE 487 (623)
Q Consensus 484 ~~i~ 487 (623)
+.+.
T Consensus 407 ~~~~ 410 (430)
T 1w1w_A 407 VGVY 410 (430)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 124
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.72 E-value=9.5e-08 Score=98.82 Aligned_cols=155 Identities=14% Similarity=0.174 Sum_probs=87.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHH-hhhhh-hhhhceeecCCCCCCccHHHHHHH---HcCCchhhhcccccccHHHHHHH
Q 006974 349 CETRVVVITGPNTGGKTASMKTL-GLASL-MSKAGLYLPAKNHPRLPWFDLILA---DIGDHQSLEQNLSTFSGHISRIV 423 (623)
Q Consensus 349 ~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-~a~~G~~vp~~~~~~l~~~d~i~~---~ig~~~~~~~~~stfS~g~~rl~ 423 (623)
+| ++++|+||||+||||+++.+ +.+.. ..+...++.++. ......+++-. ..|.... ...+.. .+.
T Consensus 104 ~g-~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~-~r~~a~eqL~~~~~~~gl~~~-----~~~~~~--~l~ 174 (296)
T 2px0_A 104 HS-KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT-YRIAAVEQLKTYAELLQAPLE-----VCYTKE--EFQ 174 (296)
T ss_dssp CS-SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC-SSTTHHHHHHHHHTTTTCCCC-----BCSSHH--HHH
T ss_pred CC-cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc-ccchHHHHHHHHHHhcCCCeE-----ecCCHH--HHH
Confidence 56 89999999999999999999 34433 232335666654 23333443322 2232110 012222 233
Q ss_pred HHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc---CCcEEEE-EcCchh-HHhhccccceeeCceEEEecCcc
Q 006974 424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD---RVGLAVV-TTHYAD-LSCLKDKDTRFENAATEFSLETL 498 (623)
Q Consensus 424 ~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~---~~~~vii-~TH~~~-l~~~~~~~~~i~~g~~~~~~~~l 498 (623)
.+++.+.+++++|+| |.|+|+.....+.. +...+.. .+.++++ +||... +..+++....+..+.+.++.-.
T Consensus 175 ~al~~~~~~dlvIiD--T~G~~~~~~~~~~e-l~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVltk~D- 250 (296)
T 2px0_A 175 QAKELFSEYDHVFVD--TAGRNFKDPQYIDE-LKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFTKID- 250 (296)
T ss_dssp HHHHHGGGSSEEEEE--CCCCCTTSHHHHHH-HHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEECTT-
T ss_pred HHHHHhcCCCEEEEe--CCCCChhhHHHHHH-HHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEeCCC-
Confidence 344445889999999 88899876655444 4443321 1223444 588854 6777776655555666654211
Q ss_pred ccccccccCCCCCcHHHHHHHHCCCC
Q 006974 499 RPTYRILWGSTGDSNALNIAKSIGFD 524 (623)
Q Consensus 499 ~~~y~l~~g~~~~s~a~~ia~~~g~~ 524 (623)
+......++.++...|+|
T Consensus 251 --------~~~~~g~~~~~~~~~~~p 268 (296)
T 2px0_A 251 --------ETTSLGSVFNILAESKIG 268 (296)
T ss_dssp --------TCSCCHHHHHHHHTCSCC
T ss_pred --------cccchhHHHHHHHHHCcC
Confidence 111223456666666655
No 125
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.70 E-value=2.3e-08 Score=104.98 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=34.0
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (623)
Q Consensus 429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~ 475 (623)
..+|+++|||||++ +|+....+|.. +++... .+.++|++||+.+
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~-~le~~~-~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRR-TMEKYS-KNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHH-HHHHST-TTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHH-HHHhhc-CCCEEEEEeCCHH
Confidence 56899999999999 99998888877 444433 3578999999965
No 126
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.70 E-value=2.5e-08 Score=106.32 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=61.4
Q ss_pred cccccccHHHH-HHHH------HHHhcCC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcc
Q 006974 410 QNLSTFSGHIS-RIVD------ILELVSR-ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKD 481 (623)
Q Consensus 410 ~~~stfS~g~~-rl~~------~~~l~~~-~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~ 481 (623)
.+++.+|+||+ ++.+ +.+++.+ |+++|||||++|+|+.....+... +..+.+ +.+||+|||+.++..+|+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~-l~~~~~-~~~vi~~th~~~~~~~~d 353 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEI-FRKVKS-IPQMIIITHHRELEDVAD 353 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHH-HHHCCS-CSEEEEEESCGGGGGGCS
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHH-HHHhcc-CCeEEEEEChHHHHhhCC
Confidence 56789999999 5643 3446778 999999999999999999999984 444433 468999999988888888
Q ss_pred ccceee
Q 006974 482 KDTRFE 487 (623)
Q Consensus 482 ~~~~i~ 487 (623)
+++.+.
T Consensus 354 ~~~~l~ 359 (371)
T 3auy_A 354 VIINVK 359 (371)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 887765
No 127
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.63 E-value=4e-09 Score=112.24 Aligned_cols=137 Identities=13% Similarity=0.087 Sum_probs=78.3
Q ss_pred EEceeeee---cCCc------------c-ccccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCC
Q 006974 328 TVGSLSKG---ISDF------------P-VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPR 391 (623)
Q Consensus 328 ~~~~l~~~---y~~~------------~-v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~ 391 (623)
++++++++ |+.. . -++++.+.+| ++++|+||||||||||++++ .|.+-|..+...
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G-~~i~ivG~sGsGKSTll~~l--------~~~~~~~~g~I~ 207 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLE-RVIVVAGETGSGKTTLMKAL--------MQEIPFDQRLIT 207 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTT-CCEEEEESSSSCHHHHHHHH--------HTTSCTTSCEEE
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHHHHH--------HhcCCCCceEEE
Confidence 46778877 7421 1 2689999999 89999999999999999999 444444333111
Q ss_pred ccHHHHHHHHcCCchhhhccccc---------ccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 006974 392 LPWFDLILADIGDHQSLEQNLST---------FSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR 461 (623)
Q Consensus 392 l~~~d~i~~~ig~~~~~~~~~st---------fS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~ 461 (623)
+.... .+.... ....++. ++++.. +-.+..++...|+.+++||+.. ..+.. +++.+.
T Consensus 208 ie~~~----e~~~~~-~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~-~l~~l~ 274 (361)
T 2gza_A 208 IEDVP----ELFLPD-HPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYD-FINVAA 274 (361)
T ss_dssp EESSS----CCCCTT-CSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHH-HHHHHH
T ss_pred ECCcc----ccCccc-cCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHH-HHHHHh
Confidence 11000 000000 0000000 012222 3334445667899999999975 12233 344454
Q ss_pred cCCcEEEEEcCchhHHhhcccccee
Q 006974 462 DRVGLAVVTTHYADLSCLKDKDTRF 486 (623)
Q Consensus 462 ~~~~~vii~TH~~~l~~~~~~~~~i 486 (623)
....+++.++|.......+++...+
T Consensus 275 ~g~~~~l~t~H~~~~~~~~~Rl~~l 299 (361)
T 2gza_A 275 SGHGGSITSCHAGSCELTFERLALM 299 (361)
T ss_dssp TTCCSCEEEEECSSHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCHHHHHHHHHHH
Confidence 4345679999997766666655443
No 128
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.62 E-value=9.2e-08 Score=94.70 Aligned_cols=138 Identities=12% Similarity=0.116 Sum_probs=76.5
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHHhhh-hhhhhhceeecCCCCCCccHHHHHHHHcCCc-hhh---------h---cc
Q 006974 346 KVECETRVVVITGPNTGGKTASMKTLGLA-SLMSKAGLYLPAKNHPRLPWFDLILADIGDH-QSL---------E---QN 411 (623)
Q Consensus 346 ~l~~g~~~~~I~GpNgsGKSTlLk~igl~-~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~-~~~---------~---~~ 411 (623)
-+.+| ++++|+||||+|||||+..++.. ........|+..+. . ..-+.+.+..+|.. +.. + ..
T Consensus 19 Gl~~G-~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~-~-~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 95 (247)
T 2dr3_A 19 GIPER-NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE-H-PVQVRQNMAQFGWDVKPYEEKGMFAMVDAFTAG 95 (247)
T ss_dssp SEETT-CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS-C-HHHHHHHHHTTTCCCHHHHHHTSEEEEECSTTT
T ss_pred CCCCC-cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC-C-HHHHHHHHHHcCCCHHHHhhCCcEEEEecchhh
Confidence 46788 89999999999999997766222 22222334444332 1 11111122233322 100 0 00
Q ss_pred c------------ccccHHH-H-HHHHHHHhcCCCcEEEEeCCCCCC--CHHHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974 412 L------------STFSGHI-S-RIVDILELVSRESLVLIDEIGSGT--DPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (623)
Q Consensus 412 ~------------stfS~g~-~-rl~~~~~l~~~~~LlLLDEp~~gl--D~~~~~~l~~all~~l~~~~~~vii~TH~~~ 475 (623)
. ...+... . ++..+.. ..+++++++|+|+... |+.....+...+.+.+++.++++|+++|...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~ 174 (247)
T 2dr3_A 96 IGKSKEYEKYIVHDLTDIREFIEVLRQAIR-DINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSV 174 (247)
T ss_dssp TCC--CCCSCBCSCCSSHHHHHHHHHHHHH-HHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred cccccccccccccCccCHHHHHHHHHHHHH-HhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 0 0111111 1 2222221 2478999999999887 6655555666677777788899999999864
Q ss_pred H---------Hhhccccceee
Q 006974 476 L---------SCLKDKDTRFE 487 (623)
Q Consensus 476 l---------~~~~~~~~~i~ 487 (623)
. ..++|.++.+.
T Consensus 175 ~~~~~~~~~~~~~~D~vi~L~ 195 (247)
T 2dr3_A 175 GERGFGGPGVEHGVDGIIRLD 195 (247)
T ss_dssp ---CCC-CCHHHHSSEEEEEE
T ss_pred CcccccccccceeEEEEEEEE
Confidence 2 35666655543
No 129
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.61 E-value=3.7e-08 Score=104.53 Aligned_cols=79 Identities=14% Similarity=0.040 Sum_probs=65.9
Q ss_pred hcccc-cccHHHH-HHHHHHHhc---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHH
Q 006974 409 EQNLS-TFSGHIS-RIVDILELV---------SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS 477 (623)
Q Consensus 409 ~~~~s-tfS~g~~-rl~~~~~l~---------~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~ 477 (623)
+++++ .+|+||+ +++++++++ .+|+++||||||++||+.....+...+.+ + +.++|++||. +.
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~-~---~qt~i~~th~-~~- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAAS-V---PQAIVTGTEL-AP- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHH-S---SEEEEEESSC-CT-
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHh-c---CcEEEEEEec-cc-
Confidence 45677 8999999 789999998 89999999999999999999999884433 3 3688999995 33
Q ss_pred hhccccceeeCceEEEe
Q 006974 478 CLKDKDTRFENAATEFS 494 (623)
Q Consensus 478 ~~~~~~~~i~~g~~~~~ 494 (623)
.+++++.+.+|++...
T Consensus 333 -~~~~i~~l~~G~i~~~ 348 (359)
T 2o5v_A 333 -GAALTLRAQAGRFTPV 348 (359)
T ss_dssp -TCSEEEEEETTEEEEC
T ss_pred -cCCEEEEEECCEEEec
Confidence 8899999999988654
No 130
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.61 E-value=3.5e-07 Score=96.76 Aligned_cols=121 Identities=17% Similarity=0.139 Sum_probs=69.2
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhh-hhhhhhhceeecCCCCCCccHHHHHHHHcCCch-hhhcccccccHHHHHHHH
Q 006974 347 VECETRVVVITGPNTGGKTASMKTLGL-ASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQ-SLEQNLSTFSGHISRIVD 424 (623)
Q Consensus 347 l~~g~~~~~I~GpNgsGKSTlLk~igl-~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~-~~~~~~stfS~g~~rl~~ 424 (623)
+++| +++.|.||||+|||||+.+++. +........|+..+. . +.. ....++|... .+. -....+.++ -+..
T Consensus 58 l~~G-~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~-~-~~~--~~a~~lG~~~~~l~-i~~~~~~e~-~l~~ 130 (349)
T 2zr9_A 58 LPRG-RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH-A-LDP--EYAKKLGVDTDSLL-VSQPDTGEQ-ALEI 130 (349)
T ss_dssp EETT-SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC-C-CCH--HHHHHTTCCGGGCE-EECCSSHHH-HHHH
T ss_pred ccCC-eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-C-cCH--HHHHHcCCCHHHeE-EecCCCHHH-HHHH
Confidence 5578 8999999999999999888832 222222335665553 2 221 1244566431 111 111223332 2333
Q ss_pred HHHh--cCCCcEEEEeCCCCCCC----------H---HHH---HHHHHHHHHHHhcCCcEEEEEcCch
Q 006974 425 ILEL--VSRESLVLIDEIGSGTD----------P---SEG---VALATSILQYLRDRVGLAVVTTHYA 474 (623)
Q Consensus 425 ~~~l--~~~~~LlLLDEp~~glD----------~---~~~---~~l~~all~~l~~~~~~vii~TH~~ 474 (623)
+..+ ..+|++|++|+|++.+. + ... ..+...+...+++.++++|+++|..
T Consensus 131 ~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~ 198 (349)
T 2zr9_A 131 ADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELR 198 (349)
T ss_dssp HHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred HHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 3333 35699999999999883 2 111 1222224434466789999999964
No 131
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.52 E-value=3.6e-07 Score=94.42 Aligned_cols=122 Identities=17% Similarity=0.120 Sum_probs=68.1
Q ss_pred ceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeecCCCCCCccHHHH---HHHHcCCc
Q 006974 330 GSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDL---ILADIGDH 405 (623)
Q Consensus 330 ~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp~~~~~~l~~~d~---i~~~ig~~ 405 (623)
+++++.|+...-++++. +| ++++|+|+||+||||+++.+ +++........++-++. ..-...++ +....|+.
T Consensus 80 ~~l~~~~~~~~~~i~~~--~~-~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~-~~~~~~~ql~~~~~~~~l~ 155 (295)
T 1ls1_A 80 EALKEALGGEARLPVLK--DR-NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT-QRPAAREQLRLLGEKVGVP 155 (295)
T ss_dssp HHHHHHTTSSCCCCCCC--SS-EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS-SCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHCCCCceeecC--CC-eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc-ccHhHHHHHHHhcccCCeE
Confidence 34556665432356666 67 89999999999999999999 44433322223333322 11111111 22223322
Q ss_pred hhh---hcccccccHHHHHHHHHHHhcCCCcEEEEeCC-CCCCCHHHHHHHHHHHHHHH
Q 006974 406 QSL---EQNLSTFSGHISRIVDILELVSRESLVLIDEI-GSGTDPSEGVALATSILQYL 460 (623)
Q Consensus 406 ~~~---~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp-~~glD~~~~~~l~~all~~l 460 (623)
-.. ...+. ...+..+......++++||+|+| +.|+|+....++.. +...+
T Consensus 156 ~~~~~~~~~p~----~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~-~~~~~ 209 (295)
T 1ls1_A 156 VLEVMDGESPE----SIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELAR-LKEVL 209 (295)
T ss_dssp EEECCTTCCHH----HHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHH-HHHHH
T ss_pred EEEcCCCCCHH----HHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHH-Hhhhc
Confidence 100 01111 12233333334478999999999 88999887777766 44444
No 132
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.43 E-value=2.4e-08 Score=99.99 Aligned_cols=30 Identities=20% Similarity=0.098 Sum_probs=26.1
Q ss_pred cCCCcEEEEe----CCCCCCCHHHHHHHHHHHHH
Q 006974 429 VSRESLVLID----EIGSGTDPSEGVALATSILQ 458 (623)
Q Consensus 429 ~~~~~LlLLD----Ep~~glD~~~~~~l~~all~ 458 (623)
+.+|+++++| ||++|+|+.....+...+.+
T Consensus 162 ~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~ 195 (246)
T 2bbw_A 162 FNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQ 195 (246)
T ss_dssp TSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHH
T ss_pred cCCCcccccccccccccccCCCCcHHHHHHHHHH
Confidence 8899999999 99999999988888774444
No 133
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.42 E-value=1.3e-06 Score=90.62 Aligned_cols=94 Identities=21% Similarity=0.229 Sum_probs=58.4
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeecCCCCCCccHHHH---HHHHcCCchhhhcccccccH
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDL---ILADIGDHQSLEQNLSTFSG 417 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp~~~~~~l~~~d~---i~~~ig~~~~~~~~~stfS~ 417 (623)
++++...++ ++++|+||||+||||+++.+ +.+........++.++. ......++ +...+|..- +...|+
T Consensus 96 ~~~~~~~~~-~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~-~r~~a~eqL~~~~~~~gl~~-----~~~~s~ 168 (306)
T 1vma_A 96 KLNVPPEPP-FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT-FRAAAIEQLKIWGERVGATV-----ISHSEG 168 (306)
T ss_dssp CCCCCSSSC-EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT-TCHHHHHHHHHHHHHHTCEE-----ECCSTT
T ss_pred CCcccCCCC-eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc-ccHHHHHHHHHHHHHcCCcE-----EecCCc
Confidence 455666677 89999999999999999999 44443322223444332 22233332 334444431 233455
Q ss_pred HHH-HH---HHHHHhcCCCcEEEEeCCCC
Q 006974 418 HIS-RI---VDILELVSRESLVLIDEIGS 442 (623)
Q Consensus 418 g~~-rl---~~~~~l~~~~~LlLLDEp~~ 442 (623)
++. ++ +++.+...+++++|+|+|+.
T Consensus 169 ~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 169 ADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 554 44 44455788999999999986
No 134
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.37 E-value=6.2e-07 Score=93.98 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=23.8
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHH-hhhh
Q 006974 348 ECETRVVVITGPNTGGKTASMKTL-GLAS 375 (623)
Q Consensus 348 ~~g~~~~~I~GpNgsGKSTlLk~i-gl~~ 375 (623)
.+| ++++|+|||||||||+++.+ |++.
T Consensus 127 ~~g-~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 127 EKP-YVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp CSS-EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCC-eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 567 89999999999999999999 5554
No 135
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.33 E-value=4.3e-08 Score=106.04 Aligned_cols=127 Identities=17% Similarity=0.135 Sum_probs=79.8
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh---------hhhhhceeecCCC----------C--------CCcc
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS---------LMSKAGLYLPAKN----------H--------PRLP 393 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~---------~~a~~G~~vp~~~----------~--------~~l~ 393 (623)
++++++..+ ..++|+|+||+||||||+++ |... +....| +++... . ..++
T Consensus 149 ~i~lelk~g-~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G-~V~~~~~~~~~l~DtpGli~~a~~~~~L~ 226 (416)
T 1udx_A 149 RLRLELMLI-ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG-VVEVSEEERFTLADIPGIIEGASEGKGLG 226 (416)
T ss_dssp EEEEEECCS-CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE-EEECSSSCEEEEEECCCCCCCGGGSCCSC
T ss_pred eeeeEEcCC-CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceee-EEEecCcceEEEEeccccccchhhhhhhh
Confidence 788999999 89999999999999999999 4421 001111 122111 0 0011
Q ss_pred HHHHHHHH----------cCCchhhhcccccccHHHHH-HHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 006974 394 WFDLILAD----------IGDHQSLEQNLSTFSGHISR-IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD 462 (623)
Q Consensus 394 ~~d~i~~~----------ig~~~~~~~~~stfS~g~~r-l~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~ 462 (623)
...+.. ++.. ..++..||+++++ ..++.+++..|.+|++ +++|+... .....+.+.+.+
T Consensus 227 --~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~ 296 (416)
T 1udx_A 227 --LEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAR 296 (416)
T ss_dssp --HHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHh
Confidence 111111 1111 4667789999994 5566678899999999 99999876 444446666666
Q ss_pred CCcEEEEEc-Cchh-HHhhc
Q 006974 463 RVGLAVVTT-HYAD-LSCLK 480 (623)
Q Consensus 463 ~~~~vii~T-H~~~-l~~~~ 480 (623)
.+.+++++| |..+ +..+.
T Consensus 297 ~g~~vi~iSA~~g~gi~eL~ 316 (416)
T 1udx_A 297 EGLAVLPVSALTGAGLPALK 316 (416)
T ss_dssp TTSCEEECCTTTCTTHHHHH
T ss_pred cCCeEEEEECCCccCHHHHH
Confidence 666666544 5543 54433
No 136
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.31 E-value=3.5e-08 Score=94.21 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=22.5
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 346 KVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 346 ~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
.+.+| ++++|+|||||||||++|++
T Consensus 5 ~i~~g-~~i~l~G~~GsGKSTl~~~L 29 (191)
T 1zp6_A 5 DDLGG-NILLLSGHPGSGKSTIAEAL 29 (191)
T ss_dssp -CCTT-EEEEEEECTTSCHHHHHHHH
T ss_pred CCCCC-eEEEEECCCCCCHHHHHHHH
Confidence 35678 89999999999999999999
No 137
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.31 E-value=1.6e-07 Score=97.61 Aligned_cols=49 Identities=14% Similarity=0.272 Sum_probs=40.4
Q ss_pred CcEEEceeeeecCCccc-cccccc-------------------cCCceEEEEEcCCCCCHHHHHHHH-hhhh
Q 006974 325 SEMTVGSLSKGISDFPV-PIDIKV-------------------ECETRVVVITGPNTGGKTASMKTL-GLAS 375 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v-~i~l~l-------------------~~g~~~~~I~GpNgsGKSTlLk~i-gl~~ 375 (623)
++++++||++.|+. .+ .+++.+ .+| .+++|+||||||||||++++ |++.
T Consensus 36 ~~i~~~~v~~~y~~-~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g-~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 36 EDLSLEEVAEIYLP-LSRLLNFYISSNLRRQAVLEQFLGTNGQRIP-YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp TTCCHHHHHHTHHH-HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCC-EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred cccchHhHHHHHHH-HHHHHHHHHhhhhhHHHHHHHHhccCCCCCC-EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 56889999999952 22 777777 777 89999999999999999999 5543
No 138
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.30 E-value=6.8e-06 Score=86.93 Aligned_cols=122 Identities=17% Similarity=0.155 Sum_probs=68.6
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHh-hhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHH-HHHH
Q 006974 347 VECETRVVVITGPNTGGKTASMKTLG-LASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVD 424 (623)
Q Consensus 347 l~~g~~~~~I~GpNgsGKSTlLk~ig-l~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~ 424 (623)
+++| +++.|+||||+|||||+.+++ .+........|+-..... .. ....++|....--......+.++. .+..
T Consensus 58 i~~G-~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~~--~ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 58 YPRG-RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--DP--VYAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp EETT-EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CH--HHHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred ccCC-cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--ch--HHHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 5578 899999999999999999993 333322233466554322 21 144556654211112223344432 2222
Q ss_pred HHHhcCCCcEEEEeCCCCCCCHHH-------------HHHHHH---HHHHHHhcCCcEEEEEcCc
Q 006974 425 ILELVSRESLVLIDEIGSGTDPSE-------------GVALAT---SILQYLRDRVGLAVVTTHY 473 (623)
Q Consensus 425 ~~~l~~~~~LlLLDEp~~glD~~~-------------~~~l~~---all~~l~~~~~~vii~TH~ 473 (623)
.+.....++++++|..+.-....+ ...+.. .+.....+.++++|++.|-
T Consensus 133 ~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv 197 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQI 197 (356)
T ss_dssp HHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEES
T ss_pred HHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeee
Confidence 222246789999999877664110 122222 2333344568899998887
No 139
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.29 E-value=2.6e-06 Score=93.36 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=29.6
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS 375 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~ 375 (623)
+++|++..| .+++|+||||||||||+++| |++.
T Consensus 285 ~Isl~i~~G-eVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 285 PLNVEGKAP-FVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp CCCCCSCTT-EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceeeccCC-eEEEEECCCcccHHHHHHHHHHHhh
Confidence 688889999 99999999999999999999 5554
No 140
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.28 E-value=1.3e-08 Score=97.44 Aligned_cols=49 Identities=10% Similarity=-0.086 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCc-hh-HHhhccccceeeCceEEEe
Q 006974 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHY-AD-LSCLKDKDTRFENAATEFS 494 (623)
Q Consensus 442 ~glD~~~~~~l~~all~~l~~~~~~vii~TH~-~~-l~~~~~~~~~i~~g~~~~~ 494 (623)
.|+|+..... .. .+..+...+.++|.+||. ++ +..+|+++. .+|++.++
T Consensus 126 ~~ld~~~~~~-~~-~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~ 176 (189)
T 2bdt_A 126 EQMGERCLEL-VE-EFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFC 176 (189)
T ss_dssp ---CGGGGHH-HH-HHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC
T ss_pred ccCCHHHHHH-HH-HHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEe
Confidence 3788877766 55 444555556789999998 65 677888776 67765443
No 141
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.23 E-value=1.9e-07 Score=96.21 Aligned_cols=99 Identities=13% Similarity=0.136 Sum_probs=59.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHH-hhhhhhh---hhceeecCCCC----------------------------CCccHHH
Q 006974 349 CETRVVVITGPNTGGKTASMKTL-GLASLMS---KAGLYLPAKNH----------------------------PRLPWFD 396 (623)
Q Consensus 349 ~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a---~~G~~vp~~~~----------------------------~~l~~~d 396 (623)
.+ .+++|+||+|||||||.+.+ +++.... ..+.+|+++++ ..+..+.
T Consensus 30 ~~-~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 30 CP-LFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp SC-EEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CC-eEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 45 79999999999999999998 5544321 12233344331 0111223
Q ss_pred HHHHHcCCc------hh--hhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHH
Q 006974 397 LILADIGDH------QS--LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 448 (623)
Q Consensus 397 ~i~~~ig~~------~~--~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~ 448 (623)
+.+..+... .. +...-..+|||+. |+..+...+-+|++||+||++.++|+..
T Consensus 109 ~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 109 EVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp HHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred HHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 334443322 11 2223457899998 5555422111899999999999999864
No 142
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.12 E-value=1.1e-05 Score=85.02 Aligned_cols=119 Identities=13% Similarity=0.007 Sum_probs=69.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh-hhhhh-hhhceeecCCCCC-CccHHHHHHHHcCCchhhhcccccccHHH-H-HHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTLG-LASLM-SKAGLYLPAKNHP-RLPWFDLILADIGDHQSLEQNLSTFSGHI-S-RIVDILE 427 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~ig-l~~~~-a~~G~~vp~~~~~-~l~~~d~i~~~ig~~~~~~~~~stfS~g~-~-rl~~~~~ 427 (623)
.++|+||+|+||||+++.+. .+... ...-.++.+.... ....+..++..+|... +....+... . ++...+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~l~~~l~ 121 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPF----PRRGLSRDEFLALLVEHLR 121 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCC----CSSCCCHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccC----CCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999982 22111 0111234433211 1234556666665421 111222222 2 3333344
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc---CCcEEEEEcCchhHH
Q 006974 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD---RVGLAVVTTHYADLS 477 (623)
Q Consensus 428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~---~~~~vii~TH~~~l~ 477 (623)
....|.+|+|||+... |+.....|.. +++.+.. .+.++|++||+.++.
T Consensus 122 ~~~~~~vlilDE~~~l-~~~~~~~L~~-~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 122 ERDLYMFLVLDDAFNL-APDILSTFIR-LGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HTTCCEEEEEETGGGS-CHHHHHHHHH-HTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred hcCCeEEEEEECcccc-chHHHHHHHH-HHHhCCCCCcCCEEEEEEECCchHH
Confidence 4567889999999876 7766666655 3333333 467889999987643
No 143
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.10 E-value=1e-05 Score=88.45 Aligned_cols=126 Identities=10% Similarity=0.033 Sum_probs=70.5
Q ss_pred ccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhh--hhceeecCCCCCCccHHHHHHH-HcCCc----------------
Q 006974 345 IKVECETRVVVITGPNTGGKTASMKTLGLASLMS--KAGLYLPAKNHPRLPWFDLILA-DIGDH---------------- 405 (623)
Q Consensus 345 l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a--~~G~~vp~~~~~~l~~~d~i~~-~ig~~---------------- 405 (623)
.-+.+| ++++|.|++|+|||||+..++...... ....|+-.+. ..-.+..+++. ..|..
T Consensus 198 gGl~~G-~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~-s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~ 275 (454)
T 2r6a_A 198 SGFQRS-DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM-SAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGK 275 (454)
T ss_dssp SSBCTT-CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS-CHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHH
T ss_pred CCCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC-CHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHH
Confidence 457788 899999999999999999994433221 1223333221 11112222221 11111
Q ss_pred -----------hhhhcccccccHHHHH-HHHHHHhcCCCcEEEEeCCCCCCCH--------HHHHHHHHHHHHHHhcCCc
Q 006974 406 -----------QSLEQNLSTFSGHISR-IVDILELVSRESLVLIDEIGSGTDP--------SEGVALATSILQYLRDRVG 465 (623)
Q Consensus 406 -----------~~~~~~~stfS~g~~r-l~~~~~l~~~~~LlLLDEp~~glD~--------~~~~~l~~all~~l~~~~~ 465 (623)
...-.....+|.++.+ ....+....++++|++|+++...++ .....+...+....++.++
T Consensus 276 ~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i 355 (454)
T 2r6a_A 276 LTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEV 355 (454)
T ss_dssp HHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 0001123456777664 2222223368999999999987743 2234444433333335689
Q ss_pred EEEEEcC
Q 006974 466 LAVVTTH 472 (623)
Q Consensus 466 ~vii~TH 472 (623)
+||+++|
T Consensus 356 ~vi~~sq 362 (454)
T 2r6a_A 356 PVIALSQ 362 (454)
T ss_dssp CEEEEEC
T ss_pred eEEEEec
Confidence 9999999
No 144
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.05 E-value=3.6e-07 Score=96.17 Aligned_cols=49 Identities=16% Similarity=0.089 Sum_probs=40.7
Q ss_pred EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL 376 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~ 376 (623)
++++++++.|++..+ ++++++.+| .+++|+||||||||||++++ |++.+
T Consensus 30 ie~~~~~~~~~~~~~l~~i~~~~~~g-~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 30 AESRRADHRAAVRDLIDAVLPQTGRA-IRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp HTCSSHHHHHHHHHHHHHHGGGCCCS-EEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HeeCCcccccChHHHHHhCCcccCCC-eEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 556788888865444 899999999 99999999999999999999 45443
No 145
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.05 E-value=1.3e-06 Score=86.30 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=21.6
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
++||++.+| ++++|+|||||||||+++++
T Consensus 19 ~~sl~v~~G-~ii~l~Gp~GsGKSTl~~~L 47 (231)
T 3lnc_A 19 PGSMLKSVG-VILVLSSPSGCGKTTVANKL 47 (231)
T ss_dssp ---CCEECC-CEEEEECSCC----CHHHHH
T ss_pred CCCcccCCC-CEEEEECCCCCCHHHHHHHH
Confidence 899999999 99999999999999999999
No 146
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.05 E-value=2.3e-06 Score=89.26 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHH-hh
Q 006974 352 RVVVITGPNTGGKTASMKTL-GL 373 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i-gl 373 (623)
++++|+|+||||||||||.+ |+
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 68999999999999999999 44
No 147
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.00 E-value=5e-06 Score=96.81 Aligned_cols=133 Identities=15% Similarity=0.168 Sum_probs=77.8
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhh-----hceeecCCCCCCccHHHHHHHHcCCc--------------hh
Q 006974 347 VECETRVVVITGPNTGGKTASMKTLGLASLMSK-----AGLYLPAKNHPRLPWFDLILADIGDH--------------QS 407 (623)
Q Consensus 347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~-----~G~~vp~~~~~~l~~~d~i~~~ig~~--------------~~ 407 (623)
+..| +.++|+|||||||||++.++.+...... +....|... ......+.+...+|.. ..
T Consensus 106 l~~~-~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~-La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~ 183 (773)
T 2xau_A 106 YQNN-QIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRV-AAMSVAQRVAEEMDVKLGEEVGYSIRFENKTS 183 (773)
T ss_dssp HHHC-SEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHH-HHHHHHHHHHHHTTCCBTTTEEEEETTEEECC
T ss_pred HhCC-CeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHH-HHHHHHHHHHHHhCCchhheecceeccccccC
Confidence 4456 7999999999999998888722211111 112234321 1111223333333321 01
Q ss_pred hhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEE-EcCchh-HHhhccc
Q 006974 408 LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS-GTDPSEGVALATSILQYLRDRVGLAVV-TTHYAD-LSCLKDK 482 (623)
Q Consensus 408 ~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~-glD~~~~~~l~~all~~l~~~~~~vii-~TH~~~-l~~~~~~ 482 (623)
....+...+.|+. +.......+.++++||+||+.. ++|......+...+... .....++++ +||+.+ +..+.+.
T Consensus 184 ~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~-~~~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 184 NKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKR-RPDLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp TTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHH-CTTCEEEEEESCSCCHHHHHHTTS
T ss_pred CCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHh-CCCceEEEEeccccHHHHHHHhcC
Confidence 2234566778887 5555555788999999999994 99987666665544432 223345666 599865 5555544
No 148
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.98 E-value=2.9e-06 Score=81.57 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=23.1
Q ss_pred cccccCCceEEEEEcCCCCCHHHHHHHH-hh
Q 006974 344 DIKVECETRVVVITGPNTGGKTASMKTL-GL 373 (623)
Q Consensus 344 ~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl 373 (623)
|+++.+| ++++|+|||||||||+++++ |+
T Consensus 1 s~~m~~g-~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 1 SNAMNKA-NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp ----CCC-CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcCCCC-cEEEEECcCCCCHHHHHHHHHhh
Confidence 3566788 89999999999999999999 44
No 149
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.98 E-value=2.9e-05 Score=81.66 Aligned_cols=129 Identities=14% Similarity=0.121 Sum_probs=71.7
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHHhhhhhh-------hhhceeecCCCCCCccHHHHHHHHcCCchh-hhccc---cc
Q 006974 346 KVECETRVVVITGPNTGGKTASMKTLGLASLM-------SKAGLYLPAKNHPRLPWFDLILADIGDHQS-LEQNL---ST 414 (623)
Q Consensus 346 ~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~-------a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~-~~~~~---st 414 (623)
-+++| +++.|+||+|+|||||+.+++....+ .....|+..+......-+.++...+|.... +-.++ ..
T Consensus 118 Gl~~G-~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~ 196 (343)
T 1v5w_A 118 GIESM-AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARA 196 (343)
T ss_dssp SBCSS-EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCCC-eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeec
Confidence 36678 89999999999999999999554322 122245555431111123344555665321 00111 22
Q ss_pred ccHHHH-H-HHHHHHhc----CCCcEEEEeCCCCCCCHH--------H----HHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974 415 FSGHIS-R-IVDILELV----SRESLVLIDEIGSGTDPS--------E----GVALATSILQYLRDRVGLAVVTTHYAD 475 (623)
Q Consensus 415 fS~g~~-r-l~~~~~l~----~~~~LlLLDEp~~glD~~--------~----~~~l~~all~~l~~~~~~vii~TH~~~ 475 (623)
++.+.. . +..+..++ .++++|++|.++.-..+. + ...+...+.....+.+++||+++|-..
T Consensus 197 ~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 197 YTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp CSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecee
Confidence 333322 2 22222222 778999999999876432 1 123333344444456889999999753
No 150
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.94 E-value=3.2e-05 Score=84.96 Aligned_cols=107 Identities=19% Similarity=0.256 Sum_probs=59.2
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhce-eecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHH
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGL-YLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS 420 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~-~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~ 420 (623)
.+++.++.| ++|+||+|+||||++|+++-. .+. |+.-+. .+....... .++.+
T Consensus 43 ~~g~~~p~g---vLL~GppGtGKT~Laraia~~-----~~~~f~~is~----------------~~~~~~~~g--~~~~~ 96 (476)
T 2ce7_A 43 RIGARMPKG---ILLVGPPGTGKTLLARAVAGE-----ANVPFFHISG----------------SDFVELFVG--VGAAR 96 (476)
T ss_dssp TTTCCCCSE---EEEECCTTSSHHHHHHHHHHH-----HTCCEEEEEG----------------GGTTTCCTT--HHHHH
T ss_pred hcCCCCCCe---EEEECCCCCCHHHHHHHHHHH-----cCCCeeeCCH----------------HHHHHHHhc--ccHHH
Confidence 445555544 789999999999999999221 121 111010 000000000 12333
Q ss_pred -HHHHHHHhcCCCcEEEEeCCC----------CCCCHHHHHHHHHHHHHHHh----cCCcEEEEEcCchh
Q 006974 421 -RIVDILELVSRESLVLIDEIG----------SGTDPSEGVALATSILQYLR----DRVGLAVVTTHYAD 475 (623)
Q Consensus 421 -rl~~~~~l~~~~~LlLLDEp~----------~glD~~~~~~l~~all~~l~----~~~~~vii~TH~~~ 475 (623)
+-.+..+....|.+|+|||+. .|.|+.....+.. ++..+. ..+..+|.+||..+
T Consensus 97 ~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~-LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 97 VRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQ-LLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHH-HHHHHHHSCGGGTEEEEEEESCGG
T ss_pred HHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHH-HHHHHhccCCCCCEEEEEecCChh
Confidence 334444556789999999993 3556655455544 555553 23568889999976
No 151
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.89 E-value=5.5e-06 Score=90.90 Aligned_cols=38 Identities=18% Similarity=0.313 Sum_probs=32.2
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCC
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~ 389 (623)
+++|++.+ ++++|+|||||||||||+++ .|...|..|.
T Consensus 22 ~vsl~i~~--e~~~liG~nGsGKSTLl~~l--------~Gl~~p~~G~ 59 (483)
T 3euj_A 22 ARTFDFDE--LVTTLSGGNGAGKSTTMAGF--------VTALIPDLTL 59 (483)
T ss_dssp EEEEECCS--SEEEEECCTTSSHHHHHHHH--------HHHHCCCTTT
T ss_pred ceEEEEcc--ceEEEECCCCCcHHHHHHHH--------hcCCCCCCCE
Confidence 88999987 79999999999999999999 5655565553
No 152
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.86 E-value=2.8e-06 Score=85.61 Aligned_cols=45 Identities=22% Similarity=0.250 Sum_probs=29.8
Q ss_pred cEEEcee-eeec-CCccc--cccccccC---CceEEEEEcCCCCCHHHHHHHH
Q 006974 326 EMTVGSL-SKGI-SDFPV--PIDIKVEC---ETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 326 ~l~~~~l-~~~y-~~~~v--~i~l~l~~---g~~~~~I~GpNgsGKSTlLk~i 371 (623)
.++++|+ +++| ++..+ +++|++.+ | ++++|+||+||||||+.+.+
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g-~~i~l~G~~GsGKSTl~~~L 68 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNG-RSMYLVGMMGSGKTTVGKIM 68 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTT-CCEEEECSTTSCHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCC-CEEEEECCCCCCHHHHHHHH
Confidence 5778999 9999 65555 99999999 9 89999999999999999999
No 153
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.80 E-value=5.3e-05 Score=78.96 Aligned_cols=128 Identities=14% Similarity=0.172 Sum_probs=72.2
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHHhhhhhhh-------hhceeecCCCCCCccHHHHHHHHcCCchh-hhcc---ccc
Q 006974 346 KVECETRVVVITGPNTGGKTASMKTLGLASLMS-------KAGLYLPAKNHPRLPWFDLILADIGDHQS-LEQN---LST 414 (623)
Q Consensus 346 ~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a-------~~G~~vp~~~~~~l~~~d~i~~~ig~~~~-~~~~---~st 414 (623)
-+++| +++.|.||+|+|||||+.+++...... ....|+..+....-.-+.+++..+|.... +..+ ...
T Consensus 103 Gl~~G-~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~ 181 (324)
T 2z43_A 103 GIETR-TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRA 181 (324)
T ss_dssp SEETT-SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCCC-cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeC
Confidence 35678 899999999999999999995543221 12245555431111223344556665321 1011 123
Q ss_pred ccHHHH--HHHHHHHhc---CCCcEEEEeCCCCCCCH--------HHH----HHHHHHHHHHHhcCCcEEEEEcCch
Q 006974 415 FSGHIS--RIVDILELV---SRESLVLIDEIGSGTDP--------SEG----VALATSILQYLRDRVGLAVVTTHYA 474 (623)
Q Consensus 415 fS~g~~--rl~~~~~l~---~~~~LlLLDEp~~glD~--------~~~----~~l~~all~~l~~~~~~vii~TH~~ 474 (623)
++.++. .+..+..++ .++++|++|+++.-... .++ ..+...+.....+.+++||++.|-.
T Consensus 182 ~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 182 INTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp CSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 344432 233343333 67999999999876532 222 2333334444445688999988864
No 154
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.79 E-value=8.9e-05 Score=80.33 Aligned_cols=118 Identities=14% Similarity=0.179 Sum_probs=63.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHh-hhhhhhhhceeecCCCCCCccHHHHHH---HHcCCchhhhcccccccH-HHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTLG-LASLMSKAGLYLPAKNHPRLPWFDLIL---ADIGDHQSLEQNLSTFSG-HISRIVDIL 426 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~ig-l~~~~a~~G~~vp~~~~~~l~~~d~i~---~~ig~~~~~~~~~stfS~-g~~rl~~~~ 426 (623)
.+++++||||+||||++..++ .+........++.++. .....++++. ..+|..-. ...+.... ...+-.+..
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~-~r~~a~eqL~~~~~~~gv~~~--~~~~~~dp~~i~~~al~~ 174 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV-YRPAAYDQLLQLGNQIGVQVY--GEPNNQNPIEIAKKGVDI 174 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC-SCHHHHHHHHHHHHTTTCCEE--CCTTCSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc-cchhHHHHHHHHHHhcCCcee--eccccCCHHHHHHHHHHH
Confidence 899999999999999999984 3332222223444442 2333344332 22232110 00001110 111112222
Q ss_pred HhcCCCcEEEEeCCCC-C--CCHHHHHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974 427 ELVSRESLVLIDEIGS-G--TDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (623)
Q Consensus 427 ~l~~~~~LlLLDEp~~-g--lD~~~~~~l~~all~~l~~~~~~vii~TH~ 473 (623)
....+++++|+|+|+. + .|+.....+.. +...+......+++.+|.
T Consensus 175 a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~-i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 175 FVKNKMDIIIVDTAGRHGYGEETKLLEEMKE-MYDVLKPDDVILVIDASI 223 (433)
T ss_dssp TTTTTCSEEEEEECCCSSSCCTTHHHHHHHH-HHHHHCCSEEEEEEEGGG
T ss_pred HHhcCCCEEEEECCCCccccCCHHHHHHHHH-HHHhhCCcceEEEEeCcc
Confidence 2345899999999995 5 78877777766 555544333445555654
No 155
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.77 E-value=0.00021 Score=75.53 Aligned_cols=122 Identities=19% Similarity=0.233 Sum_probs=67.1
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhhhhh-hhhhceeecCCCCCCccHHHHHHHHcCCchh-hhcccccccHHHH-HHH
Q 006974 347 VECETRVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGDHQS-LEQNLSTFSGHIS-RIV 423 (623)
Q Consensus 347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~-~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~-~~~~~stfS~g~~-rl~ 423 (623)
+++| +++.|.||+|+|||||...++.... ......|+..+.. +.. .....+|.... +. -...-+.++. .+.
T Consensus 60 l~~G-~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s--~~~--~~a~~~g~~~~~l~-i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 60 LPMG-RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA--LDP--IYARKLGVDIDNLL-CSQPDTGEQALEIC 133 (356)
T ss_dssp EETT-SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC--CCH--HHHHHTTCCGGGCE-EECCSSHHHHHHHH
T ss_pred ccCC-eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC--ccH--HHHHHcCCChhhee-eeCCCCHHHHHHHH
Confidence 5678 8999999999999999988843322 2223456665532 221 12445554311 10 0011122222 222
Q ss_pred HHHHhcCCCcEEEEeCCCCCCCHHH------------H----HHHHHHHHHHHhcCCcEEEEEcCch
Q 006974 424 DILELVSRESLVLIDEIGSGTDPSE------------G----VALATSILQYLRDRVGLAVVTTHYA 474 (623)
Q Consensus 424 ~~~~l~~~~~LlLLDEp~~glD~~~------------~----~~l~~all~~l~~~~~~vii~TH~~ 474 (623)
..+....++++|++|.++.-....+ . ..+...+...+++.+++||+++|-.
T Consensus 134 ~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~ 200 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 200 (356)
T ss_dssp HHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--
T ss_pred HHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 1122246899999999998764211 1 1222334444566789999998864
No 156
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.73 E-value=1.6e-05 Score=77.22 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=24.3
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHH-hhhh
Q 006974 347 VECETRVVVITGPNTGGKTASMKTL-GLAS 375 (623)
Q Consensus 347 l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~ 375 (623)
..+| ++++|+||||||||||+++| |++.
T Consensus 19 ~~~g-~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 19 QPGR-QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CCSC-EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCC-eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567 89999999999999999999 5554
No 157
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.70 E-value=2.2e-05 Score=85.43 Aligned_cols=102 Identities=15% Similarity=0.251 Sum_probs=59.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhhhhhhhhc---eeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHh
Q 006974 352 RVVVITGPNTGGKTASMKTLGLASLMSKAG---LYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILEL 428 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~igl~~~~a~~G---~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l 428 (623)
..++|.||+|+|||||++.++-.......+ .++.+.. +...+...+... ........
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~-----~~~~~~~~~~~~---------------~~~~~~~~ 190 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK-----FLNDLVDSMKEG---------------KLNEFREK 190 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH-----HHHHHHHHHHTT---------------CHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH-----HHHHHHHHHHcc---------------cHHHHHHH
Confidence 578999999999999999994322111001 1222110 111121111000 01111222
Q ss_pred cC-CCcEEEEeCCCCCCCH-HHHHHHHHHHHHHHhcCCcEEEEEcCch
Q 006974 429 VS-RESLVLIDEIGSGTDP-SEGVALATSILQYLRDRVGLAVVTTHYA 474 (623)
Q Consensus 429 ~~-~~~LlLLDEp~~glD~-~~~~~l~~all~~l~~~~~~vii~TH~~ 474 (623)
.. ++++|+|||+....+. .....+.. +++.+.+.+..+|++||..
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~-~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFH-TFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHH-HHHHHHTTTCEEEEEESSC
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHH-HHHHHHHCCCeEEEEECCC
Confidence 23 8999999999887764 45555665 6666777788899999973
No 158
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.69 E-value=1.2e-05 Score=84.31 Aligned_cols=120 Identities=14% Similarity=0.089 Sum_probs=60.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHh-hhhhh---hhhceeecCCCC-CCccHHHHHHHHcCCchhhhcccccccHHH-H-HHHH
Q 006974 352 RVVVITGPNTGGKTASMKTLG-LASLM---SKAGLYLPAKNH-PRLPWFDLILADIGDHQSLEQNLSTFSGHI-S-RIVD 424 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~ig-l~~~~---a~~G~~vp~~~~-~~l~~~d~i~~~ig~~~~~~~~~stfS~g~-~-rl~~ 424 (623)
..++|+||+|+||||+++.+. .+... .....++.+... .....+..++..+|... +....+... . ++..
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~~~l~~ 121 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKV----PFTGLSIAELYRRLVK 121 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCC----CSSSCCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCC----CCCCCCHHHHHHHHHH
Confidence 689999999999999999982 22111 001122222110 11112333333333211 111222222 2 3433
Q ss_pred HHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH---hcCCcEEEEEcCchhH
Q 006974 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL---RDRVGLAVVTTHYADL 476 (623)
Q Consensus 425 ~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l---~~~~~~vii~TH~~~l 476 (623)
.+.....|.+|+|||+....+......+. .+++.+ ...+.++|++||+..+
T Consensus 122 ~l~~~~~~~vlilDE~~~l~~~~~~~~l~-~l~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 122 AVRDYGSQVVIVLDEIDAFVKKYNDDILY-KLSRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp HHHTCCSCEEEEEETHHHHHHSSCSTHHH-HHHHHHHSCCC--EEEEEEESCGGG
T ss_pred HHhccCCeEEEEEcChhhhhccCcCHHHH-HHhhchhhcCCCeEEEEEEECCCCh
Confidence 44444558899999997755321112222 244444 2335678999998754
No 159
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.68 E-value=4.6e-07 Score=97.13 Aligned_cols=56 Identities=9% Similarity=-0.094 Sum_probs=40.7
Q ss_pred CC--cEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCcEEEEEcCchh-HHhhccccc-eeeCc
Q 006974 431 RE--SLVLIDEIGSGTDPSEGVALATSILQYL-RDRVGLAVVTTHYAD-LSCLKDKDT-RFENA 489 (623)
Q Consensus 431 ~~--~LlLLDEp~~glD~~~~~~l~~all~~l-~~~~~~vii~TH~~~-l~~~~~~~~-~i~~g 489 (623)
+| ++.++|||+.+.|+........ .++.+ ...|.|++ +|+.. +..+|+++. .+.+|
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~-~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G 199 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLE-GLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTET 199 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTT
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHH-HHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccC
Confidence 67 8889999999999988877766 44555 44455543 99975 667888776 56666
No 160
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.68 E-value=2.2e-05 Score=86.75 Aligned_cols=29 Identities=10% Similarity=0.339 Sum_probs=25.2
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
++.+.+..+ ..++|.|++||||||+|+++
T Consensus 159 pv~ldL~~~-pHlLIaG~TGSGKSt~L~~l 187 (512)
T 2ius_A 159 PVVADLAKM-PHLLVAGTTGSGASVGVNAM 187 (512)
T ss_dssp EEEEEGGGS-CSEEEECCTTSSHHHHHHHH
T ss_pred EEEEEcccC-ceEEEECCCCCCHHHHHHHH
Confidence 566677777 67999999999999999998
No 161
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.67 E-value=1.8e-06 Score=85.73 Aligned_cols=49 Identities=16% Similarity=0.276 Sum_probs=37.0
Q ss_pred cEEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCC
Q 006974 326 EMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~ 389 (623)
.++++|+...|+. ++++.+ .+++|+|||||||||+|++| +|...|..+.
T Consensus 9 ~l~l~~~~~~~~~-----~~~~~~--~~~~i~GpnGsGKSTll~~i--------~g~~~~~~G~ 57 (227)
T 1qhl_A 9 SLTLINWNGFFAR-----TFDLDE--LVTTLSGGNGAGKSTTMAAF--------VTALIPDLTL 57 (227)
T ss_dssp EEEEEEETTEEEE-----EECHHH--HHHHHHSCCSHHHHHHHHHH--------HHHHSCCTTT
T ss_pred EEEEEeeecccCC-----EEEEcC--cEEEEECCCCCCHHHHHHHH--------hcccccCCCe
Confidence 3677788776643 345544 58899999999999999999 7766677663
No 162
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.66 E-value=1.4e-05 Score=84.51 Aligned_cols=102 Identities=16% Similarity=0.182 Sum_probs=62.4
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh-hhh-----h-----------hceeecCCCC------------CC
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-LMS-----K-----------AGLYLPAKNH------------PR 391 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~-~~a-----~-----------~G~~vp~~~~------------~~ 391 (623)
++++.+ .| ++++|+||||+|||||++++ |+.. +.. . .-.++|+.+. ..
T Consensus 208 ~L~~~~-~G-~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~l~~ 285 (358)
T 2rcn_A 208 PLEEAL-TG-RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGLWH 285 (358)
T ss_dssp HHHHHH-TT-SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCCCCC
T ss_pred HHHHhc-CC-CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhhhcC
Confidence 334433 57 89999999999999999999 6554 210 0 0124454321 00
Q ss_pred ccH------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 006974 392 LPW------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD 462 (623)
Q Consensus 392 l~~------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~ 462 (623)
++. |..++..+|+.+..+....++| |++ +++++. |+.+..+......+++.+.+
T Consensus 286 l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~----------------gli~~~R~~~y~~l~~e~~~ 346 (358)
T 2rcn_A 286 LEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVEN----------------GAIAETRFENYHRILESMAQ 346 (358)
T ss_dssp CCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHH----------------TSSCHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHh----------------cCCCHHHHHHHHHHHHHHHh
Confidence 110 2234556677777788899999 666 677664 34555666665556666544
No 163
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.66 E-value=9.4e-05 Score=77.64 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=69.1
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHHhhhhhhh-hhceeecCCCCCCccHHHHHHHHc-CCc-hhhhcccccccHHHH-H
Q 006974 346 KVECETRVVVITGPNTGGKTASMKTLGLASLMS-KAGLYLPAKNHPRLPWFDLILADI-GDH-QSLEQNLSTFSGHIS-R 421 (623)
Q Consensus 346 ~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a-~~G~~vp~~~~~~l~~~d~i~~~i-g~~-~~~~~~~stfS~g~~-r 421 (623)
-+.+| ++++|.|++|+|||||+..++...... ...+|+--+. ..-.+..+++... +.. +.+.. ..||.++. +
T Consensus 42 Gl~~G-~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm-s~~ql~~Rlls~~~~v~~~~l~~--g~Ls~~e~~~ 117 (338)
T 4a1f_A 42 GFNKG-SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM-SAEQLALRALSDLTSINMHDLES--GRLDDDQWEN 117 (338)
T ss_dssp SBCTT-CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS-CHHHHHHHHHHHHHCCCHHHHHH--TCCCHHHHHH
T ss_pred CCCCC-cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC-CHHHHHHHHHHHhhCCCHHHHhc--CCCCHHHHHH
Confidence 46788 899999999999999999985443321 1122332221 1112233333221 222 12222 36888877 7
Q ss_pred HHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cC-CcEEEEEcCc
Q 006974 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR-DR-VGLAVVTTHY 473 (623)
Q Consensus 422 l~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~-~~-~~~vii~TH~ 473 (623)
+..+...+.+++++|.|+|+. ++.+-. . .++.+. +. +..+||+-|-
T Consensus 118 l~~a~~~l~~~~l~I~d~~~~--si~~i~---~-~ir~l~~~~gg~~lIVIDyL 165 (338)
T 4a1f_A 118 LAKCFDHLSQKKLFFYDKSYV--RIEQIR---L-QLRKLKSQHKELGIAFIDYL 165 (338)
T ss_dssp HHHHHHHHHHSCEEEECCTTC--CHHHHH---H-HHHHHHHHCTTEEEEEEEEE
T ss_pred HHHHHHHHhcCCeEEeCCCCC--cHHHHH---H-HHHHHHHhcCCCCEEEEech
Confidence 888888777889999999864 444333 3 233343 33 5666666544
No 164
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.66 E-value=7.2e-06 Score=88.69 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=34.2
Q ss_pred cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhh
Q 006974 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA 374 (623)
Q Consensus 326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~ 374 (623)
.++++++++.|+...+ ++ + ..+| .+++|+|||||||||||+++ |++
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~-~~~g-gii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-I-KRPH-GIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-H-TSSS-EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCHHHcCCCHHHHHHHHHH-H-HhcC-CeEEEECCCCCCHHHHHHHHHhhc
Confidence 3456777777765433 44 4 3567 89999999999999999999 443
No 165
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.65 E-value=5.2e-05 Score=75.65 Aligned_cols=41 Identities=15% Similarity=0.262 Sum_probs=32.1
Q ss_pred EEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 328 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 328 ~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
+++++.+.|++..+ ++++.+++| ++|+||||+|||||++++
T Consensus 27 ~l~~l~~~~~~~~~~~~~~~~~~~g---~ll~G~~G~GKTtl~~~i 69 (254)
T 1ixz_A 27 ELKEIVEFLKNPSRFHEMGARIPKG---VLLVGPPGVGKTHLARAV 69 (254)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCSE---EEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCe---EEEECCCCCCHHHHHHHH
Confidence 34566666655433 778888766 799999999999999999
No 166
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.63 E-value=2.5e-05 Score=73.76 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=24.1
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
++++.+.+| +++|+|||||||||++++|
T Consensus 19 ~~~~~~~~g--~~~i~G~NGsGKStll~ai 46 (182)
T 3kta_A 19 KVVIPFSKG--FTAIVGANGSGKSNIGDAI 46 (182)
T ss_dssp CEEEECCSS--EEEEEECTTSSHHHHHHHH
T ss_pred cEEEecCCC--cEEEECCCCCCHHHHHHHH
Confidence 455666666 8999999999999999999
No 167
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.63 E-value=1.9e-05 Score=76.30 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=21.0
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHH-hhh
Q 006974 348 ECETRVVVITGPNTGGKTASMKTL-GLA 374 (623)
Q Consensus 348 ~~g~~~~~I~GpNgsGKSTlLk~i-gl~ 374 (623)
.+| ++++|+||||||||||+|++ |+.
T Consensus 2 ~~g-~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGP-RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCCCCHHHHHHHHHhhC
Confidence 356 79999999999999999999 544
No 168
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.62 E-value=2.8e-05 Score=82.14 Aligned_cols=113 Identities=17% Similarity=0.113 Sum_probs=65.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhhhhhhhhceee-----cCCC-CCCccHHH--H-HHHHcCCchhhhcccccccHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYL-----PAKN-HPRLPWFD--L-ILADIGDHQSLEQNLSTFSGHISRI 422 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~v-----p~~~-~~~l~~~d--~-i~~~ig~~~~~~~~~stfS~g~~rl 422 (623)
-.++|+|+||+|||||++.+ .|... |... ...+..+. . -+..++.....+......++++++.
T Consensus 168 ~~v~lvG~~gvGKSTLin~L--------~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 239 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKAL--------TTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQA 239 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHH--------CSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH--------hCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHH
Confidence 57899999999999999999 33211 1100 00000000 0 0001111222334556677777654
Q ss_pred HHHHHhcCCCcEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEc--Cch
Q 006974 423 VDILELVSRESLVLID-EIGSGTDPSEGVALATSILQYLRDRVGLAVVTT--HYA 474 (623)
Q Consensus 423 ~~~~~l~~~~~LlLLD-Ep~~glD~~~~~~l~~all~~l~~~~~~vii~T--H~~ 474 (623)
..+.....+.-++++| +++.|+|..+...+...+.... . +..+|++. ||.
T Consensus 240 ~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~-~~piilV~NK~Dl 292 (357)
T 2e87_A 240 ILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-K-DLPFLVVINKIDV 292 (357)
T ss_dssp HHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-T-TSCEEEEECCTTT
T ss_pred HHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-C-CCCEEEEEECccc
Confidence 4444455677899999 9999999988777666444432 2 45555555 775
No 169
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.58 E-value=0.00067 Score=70.62 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=27.8
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS 375 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~ 375 (623)
+++|...++ ++++|+||||+||||++..+ +.+.
T Consensus 97 ~l~~~~~~~-~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 97 RIDFKENRL-NIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp CCCCCTTSC-EEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CccccCCCC-eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 567777788 89999999999999999999 3443
No 170
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.56 E-value=2.3e-05 Score=74.75 Aligned_cols=23 Identities=39% Similarity=0.627 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHH-hhh
Q 006974 352 RVVVITGPNTGGKTASMKTL-GLA 374 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i-gl~ 374 (623)
++++|+|||||||||++|++ |+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 68999999999999999999 444
No 171
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.53 E-value=2.7e-05 Score=74.77 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
..+.|+||+|+||||+++.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i 74 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAI 74 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 57899999999999999998
No 172
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.53 E-value=0.00015 Score=73.74 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=24.2
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
++++.++.| ++|+||||+|||||+|++
T Consensus 38 ~~~l~~~~G---vlL~Gp~GtGKTtLakal 64 (274)
T 2x8a_A 38 ALGLVTPAG---VLLAGPPGCGKTLLAKAV 64 (274)
T ss_dssp HTTCCCCSE---EEEESSTTSCHHHHHHHH
T ss_pred HcCCCCCCe---EEEECCCCCcHHHHHHHH
Confidence 677777766 899999999999999999
No 173
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.53 E-value=0.00034 Score=76.64 Aligned_cols=50 Identities=8% Similarity=0.123 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhchhchhhHHHHHHHHHhHHHHHhHhhhHHhhccc
Q 006974 568 AASLHAEIMDLYREDSTSASISVYRYQFAVTSTLSKVDFDAIPNIDQCKD 617 (623)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (623)
+..++..++++..+...+....|+++..++..+..+++.+++.++++...
T Consensus 396 i~~l~~~i~~l~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~ 445 (468)
T 3pxg_A 396 LKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKE 445 (468)
T ss_dssp THHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555544445677888888999999999999888876543
No 174
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.53 E-value=3.1e-05 Score=74.29 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.0
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 346 KVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 346 ~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
++.+| .+++|+|||||||||+++.+
T Consensus 2 ~i~~g-~~i~l~G~~GsGKSTl~~~L 26 (207)
T 2j41_A 2 DNEKG-LLIVLSGPSGVGKGTVRKRI 26 (207)
T ss_dssp --CCC-CEEEEECSTTSCHHHHHHHH
T ss_pred CCCCC-CEEEEECCCCCCHHHHHHHH
Confidence 46678 89999999999999999999
No 175
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.52 E-value=3.4e-05 Score=74.30 Aligned_cols=40 Identities=15% Similarity=0.087 Sum_probs=27.6
Q ss_pred eeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 331 SLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 331 ~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
|++..++.... ...+...+| .+++|+|||||||||+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g-~~i~l~G~sGsGKSTl~~~L 45 (200)
T 3uie_A 4 NIKWHECSVEKVDRQRLLDQKG-CVIWVTGLSGSGKSTLACAL 45 (200)
T ss_dssp ------CCCCHHHHHHHHTSCC-EEEEEECSTTSSHHHHHHHH
T ss_pred CCcccccccCHHHHHHhcCCCC-eEEEEECCCCCCHHHHHHHH
Confidence 34444443333 556666788 89999999999999999999
No 176
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.52 E-value=2.3e-05 Score=81.96 Aligned_cols=45 Identities=24% Similarity=0.320 Sum_probs=33.8
Q ss_pred EEEceeeeecCCccc--cccccccCC------ceEEEEEcCCCCCHHHHHHHH
Q 006974 327 MTVGSLSKGISDFPV--PIDIKVECE------TRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 327 l~~~~l~~~y~~~~v--~i~l~l~~g------~~~~~I~GpNgsGKSTlLk~i 371 (623)
++.++++..||...+ ++++.+..| .+.++|+||||+|||||++++
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~i 71 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHII 71 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHH
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHH
Confidence 344566777776554 677776543 157899999999999999999
No 177
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.49 E-value=0.00033 Score=72.56 Aligned_cols=126 Identities=16% Similarity=0.157 Sum_probs=69.9
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhhhhhhh-----------------hhceeecCCCCCCccHHHHHHHHcCCchh-h
Q 006974 347 VECETRVVVITGPNTGGKTASMKTLGLASLMS-----------------KAGLYLPAKNHPRLPWFDLILADIGDHQS-L 408 (623)
Q Consensus 347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a-----------------~~G~~vp~~~~~~l~~~d~i~~~ig~~~~-~ 408 (623)
+++| +++.|.||+|+|||||..+++....+. ....|+..+....-.-+.+.+..+|.... +
T Consensus 95 l~~g-~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 95 LESQ-SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp EETT-EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred ccCC-eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 5678 899999999999999999986543222 12245554431111223334555665321 1
Q ss_pred -hc--ccccccHHHH-H-HHHHHHhc---CCCcEEEEeCCCCCCC--------HHHH----HHHHHHHHHHHhcCCcEEE
Q 006974 409 -EQ--NLSTFSGHIS-R-IVDILELV---SRESLVLIDEIGSGTD--------PSEG----VALATSILQYLRDRVGLAV 468 (623)
Q Consensus 409 -~~--~~stfS~g~~-r-l~~~~~l~---~~~~LlLLDEp~~glD--------~~~~----~~l~~all~~l~~~~~~vi 468 (623)
++ ....++.++. . +..+..++ .++++|++|..+.-.. ..++ ..+...+.....+.+++||
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi 253 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVL 253 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 11 1223444432 2 22222222 5789999999876432 2222 2334434554556788888
Q ss_pred EEcCc
Q 006974 469 VTTHY 473 (623)
Q Consensus 469 i~TH~ 473 (623)
++.|-
T Consensus 254 ~~nq~ 258 (322)
T 2i1q_A 254 VTNQV 258 (322)
T ss_dssp EEECE
T ss_pred EECce
Confidence 88875
No 178
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.46 E-value=5.8e-06 Score=93.63 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=31.6
Q ss_pred eeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 333 SKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 333 ~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
+.-||...+ .+++.+..| +.++|+||||+||||+++++
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g-~~vll~Gp~GtGKTtlar~i 80 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK-RHVLLIGEPGTGKSMLGQAM 80 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC-CEEEEEeCCCCCHHHHHHHH
Confidence 334454444 888899999 89999999999999999999
No 179
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.45 E-value=7.4e-05 Score=71.17 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=28.2
Q ss_pred HHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006974 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459 (623)
Q Consensus 422 l~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~ 459 (623)
...+.+++.+|.++++| ++++|+.....+...+.+.
T Consensus 154 ~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 154 TDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 44566677788899999 9999999888888766554
No 180
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.42 E-value=5.2e-05 Score=82.10 Aligned_cols=40 Identities=20% Similarity=0.399 Sum_probs=31.9
Q ss_pred EEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 327 MTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 327 l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
++++|+ ++|++.. ++.+..| ++++|+||||+||||+|++|
T Consensus 7 l~~~~~-~~~~~~~---~~~~~~~-~~~~i~G~nG~GKstll~ai 46 (430)
T 1w1w_A 7 LELSNF-KSYRGVT---KVGFGES-NFTSIIGPNGSGKSNMMDAI 46 (430)
T ss_dssp EEEESC-SSCCSEE---EEECTTC-SEEEEECSTTSSHHHHHHHH
T ss_pred EEEeCE-EEECCce---eEEecCC-CEEEEECCCCCCHHHHHHHH
Confidence 677788 7886532 2445666 79999999999999999999
No 181
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.40 E-value=0.00015 Score=70.71 Aligned_cols=94 Identities=14% Similarity=0.192 Sum_probs=51.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhhhhhh-hhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHH
Q 006974 349 CETRVVVITGPNTGGKTASMKTLGLASLM-SKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILE 427 (623)
Q Consensus 349 ~g~~~~~I~GpNgsGKSTlLk~igl~~~~-a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~ 427 (623)
.+ ..++|+||+|+||||+++.++-.... .....++.... + ...... +..
T Consensus 51 ~~-~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~---------~---------~~~~~~-----------~~~ 100 (242)
T 3bos_A 51 GV-QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI---------H---------ASISTA-----------LLE 100 (242)
T ss_dssp SC-SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG---------G---------GGSCGG-----------GGT
T ss_pred CC-CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH---------H---------HHHHHH-----------HHH
Confidence 34 78999999999999999999322111 01112222211 0 000000 011
Q ss_pred hcCCCcEEEEeCCCCCCCHH-HHHHHHHHHHHHHhcCCcE-EEEEcCc
Q 006974 428 LVSRESLVLIDEIGSGTDPS-EGVALATSILQYLRDRVGL-AVVTTHY 473 (623)
Q Consensus 428 l~~~~~LlLLDEp~~glD~~-~~~~l~~all~~l~~~~~~-vii~TH~ 473 (623)
...++.+|++||+..-.... ....+.. +++.+.+.+.. +|++|+.
T Consensus 101 ~~~~~~vliiDe~~~~~~~~~~~~~l~~-~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 101 GLEQFDLICIDDVDAVAGHPLWEEAIFD-LYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp TGGGSSEEEEETGGGGTTCHHHHHHHHH-HHHHHHHHCSCEEEEEESS
T ss_pred hccCCCEEEEeccccccCCHHHHHHHHH-HHHHHHHcCCCeEEEEcCC
Confidence 23568999999987644322 2444555 55555554544 7777775
No 182
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.37 E-value=1.8e-05 Score=88.55 Aligned_cols=40 Identities=18% Similarity=0.349 Sum_probs=29.4
Q ss_pred ceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 330 GSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 330 ~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
+++.+.|+...+ .+++.+ +| ..++|+||||+||||++|++
T Consensus 87 ~~vk~~i~~~~~l~~~~~~~-~g-~~vll~Gp~GtGKTtlar~i 128 (543)
T 3m6a_A 87 EKVKERILEYLAVQKLTKSL-KG-PILCLAGPPGVGKTSLAKSI 128 (543)
T ss_dssp HHHHHHHHHHHHHHHHSSSC-CS-CEEEEESSSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccC-CC-CEEEEECCCCCCHHHHHHHH
Confidence 344444443222 556666 67 79999999999999999999
No 183
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.35 E-value=4.7e-05 Score=84.40 Aligned_cols=29 Identities=17% Similarity=0.399 Sum_probs=27.1
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++.+..| .+++|+|||||||||+|+++
T Consensus 252 ~l~~~v~~g-~~i~I~GptGSGKTTlL~aL 280 (511)
T 2oap_1 252 YLWLAIEHK-FSAIVVGETASGKTTTLNAI 280 (511)
T ss_dssp HHHHHHHTT-CCEEEEESTTSSHHHHHHHH
T ss_pred HHHHHHhCC-CEEEEECCCCCCHHHHHHHH
Confidence 678888999 78999999999999999999
No 184
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.34 E-value=0.0021 Score=68.12 Aligned_cols=122 Identities=15% Similarity=0.146 Sum_probs=65.6
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhhhhh-hhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHH
Q 006974 347 VECETRVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDI 425 (623)
Q Consensus 347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~-~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~ 425 (623)
+++| +++.|.||.|+|||||...++.... ......|+..+. ..-+. ....+|....--.-....+.++ -+..+
T Consensus 71 l~~G-~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~-s~~~~---~a~~~g~d~~~l~i~~~~~~e~-~l~~l 144 (366)
T 1xp8_A 71 IPRG-RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH-ALDPV---YARALGVNTDELLVSQPDNGEQ-ALEIM 144 (366)
T ss_dssp EETT-SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC-CCCHH---HHHHTTCCGGGCEEECCSSHHH-HHHHH
T ss_pred ccCC-cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC-ChhHH---HHHHcCCCHHHceeecCCcHHH-HHHHH
Confidence 4578 8999999999999999988843322 222345666554 22121 2445565321000011122222 22223
Q ss_pred HHh--cCCCcEEEEeCCCCCCC-H------H-----HH-HHHHH---HHHHHHhcCCcEEEEEcCch
Q 006974 426 LEL--VSRESLVLIDEIGSGTD-P------S-----EG-VALAT---SILQYLRDRVGLAVVTTHYA 474 (623)
Q Consensus 426 ~~l--~~~~~LlLLDEp~~glD-~------~-----~~-~~l~~---all~~l~~~~~~vii~TH~~ 474 (623)
..+ ..++++|++|.++.-.. . . .. ..+.. .+.....+.+++||++.|-.
T Consensus 145 ~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~ 211 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVR 211 (366)
T ss_dssp HHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC-
T ss_pred HHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecc
Confidence 222 35789999999987552 1 0 11 12222 23333356788899988864
No 185
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.34 E-value=9.2e-05 Score=70.12 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=20.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHH
Q 006974 349 CETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 349 ~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
.| ++++|+||||||||||++.+
T Consensus 4 ~g-~~i~i~GpsGsGKSTL~~~L 25 (180)
T 1kgd_A 4 MR-KTLVLLGAHGVGRRHIKNTL 25 (180)
T ss_dssp CC-CEEEEECCTTSSHHHHHHHH
T ss_pred CC-CEEEEECCCCCCHHHHHHHH
Confidence 46 89999999999999999999
No 186
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.34 E-value=0.00062 Score=69.23 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
..++|+||+|+||||+++.+
T Consensus 55 ~~vll~Gp~GtGKT~la~~l 74 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAV 74 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHH
Confidence 67899999999999999999
No 187
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.29 E-value=0.00064 Score=70.47 Aligned_cols=122 Identities=12% Similarity=0.055 Sum_probs=69.2
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHHhhhhhhh-hhceeecCCCCCCccHHHHHHHH-cCCc-hhhhcccccccHHHH-H
Q 006974 346 KVECETRVVVITGPNTGGKTASMKTLGLASLMS-KAGLYLPAKNHPRLPWFDLILAD-IGDH-QSLEQNLSTFSGHIS-R 421 (623)
Q Consensus 346 ~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a-~~G~~vp~~~~~~l~~~d~i~~~-ig~~-~~~~~~~stfS~g~~-r 421 (623)
-+.+| ++++|.|+.|+|||||+..++...... ...+|+..+. ..-.+..++... .|.. ..+..+...||.++. +
T Consensus 64 Gl~~G-~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~-s~~~l~~R~~~~~~~i~~~~l~~~~~~l~~~~~~~ 141 (315)
T 3bh0_A 64 GYKRR-NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM-GKKENIKRLIVTAGSINAQKIKAARRDFASEDWGK 141 (315)
T ss_dssp SBCTT-CEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSS-CHHHHHHHHHHHHTTCCHHHHHSCHHHHCSSCHHH
T ss_pred CCCCC-cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCC-CHHHHHHHHHHHHcCCCHHHHhcCCCCCCHHHHHH
Confidence 46788 999999999999999999985443322 1233443332 212223344332 1322 112221123776666 7
Q ss_pred HHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcE--EEEEcCch
Q 006974 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGL--AVVTTHYA 474 (623)
Q Consensus 422 l~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~--vii~TH~~ 474 (623)
+..+...+.+..+++.|+|+ +++.+ |...+.....+.+.. +||+-|..
T Consensus 142 l~~a~~~l~~~~i~i~d~~~--~~~~~---i~~~i~~l~~~~~~~~~lVVID~l~ 191 (315)
T 3bh0_A 142 LSMAIGEISNSNINIFDKAG--QSVNY---IWSKTRQTKRKNPGKRVIVMIDYLQ 191 (315)
T ss_dssp HHHHHHHHHTSCEEEECCSC--CBHHH---HHHHHHHHHHTSSSCCEEEEEECGG
T ss_pred HHHHHHHHhCCCEEEECCCC--CCHHH---HHHHHHHHHHhcCCCCeEEEEeCch
Confidence 77777766678899999886 44433 333222222334566 77776653
No 188
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.29 E-value=0.00054 Score=71.17 Aligned_cols=105 Identities=17% Similarity=0.221 Sum_probs=56.4
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHH
Q 006974 347 VECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDIL 426 (623)
Q Consensus 347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~ 426 (623)
+.+| .++.|.||.|+|||||..+++.. ......|+.......+. ..+ ......+..+.
T Consensus 120 i~~g-sviLI~GpPGsGKTtLAlqlA~~--~G~~VlyIs~~~eE~v~----------~~~---------~~le~~l~~i~ 177 (331)
T 2vhj_A 120 RYAS-GMVIVTGKGNSGKTPLVHALGEA--LGGKDKYATVRFGEPLS----------GYN---------TDFNVFVDDIA 177 (331)
T ss_dssp EEES-EEEEEECSCSSSHHHHHHHHHHH--HHTTSCCEEEEBSCSST----------TCB---------CCHHHHHHHHH
T ss_pred CCCC-cEEEEEcCCCCCHHHHHHHHHHh--CCCCEEEEEecchhhhh----------hhh---------cCHHHHHHHHH
Confidence 4556 78899999999999999999543 22222344441101111 000 11122232233
Q ss_pred HhcCCCcEEEEeCCCCCCCHHH-----------HHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974 427 ELVSRESLVLIDEIGSGTDPSE-----------GVALATSILQYLRDRVGLAVVTTHY 473 (623)
Q Consensus 427 ~l~~~~~LlLLDEp~~glD~~~-----------~~~l~~all~~l~~~~~~vii~TH~ 473 (623)
..+.+.++|++||.+.=..... ...+...+...+.+.++++|++|+-
T Consensus 178 ~~l~~~~LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp 235 (331)
T 2vhj_A 178 RAMLQHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (331)
T ss_dssp HHHHHCSEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred HHHhhCCEEEEecccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 2222223999999986533222 2233333555556678899998884
No 189
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.28 E-value=0.00016 Score=66.60 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=22.1
Q ss_pred cccccCCceEEEEEcCCCCCHHHHHHHHh
Q 006974 344 DIKVECETRVVVITGPNTGGKTASMKTLG 372 (623)
Q Consensus 344 ~l~l~~g~~~~~I~GpNgsGKSTlLk~ig 372 (623)
++.+.+| +.+|+||||+||||+|.+|.
T Consensus 18 ~i~f~~g--~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 18 VVEFKEG--INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEECCSE--EEEEECCTTSSHHHHHHHHH
T ss_pred EEEcCCC--eEEEECCCCCCHHHHHHHHH
Confidence 3444444 89999999999999999993
No 190
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.27 E-value=0.00012 Score=70.49 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=21.2
Q ss_pred ccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 345 IKVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 345 l~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
+...+| ++++|+|||||||||++|++
T Consensus 24 m~~~~g-~~i~l~G~~GsGKSTl~~~L 49 (200)
T 4eun_A 24 MTGEPT-RHVVVMGVSGSGKTTIAHGV 49 (200)
T ss_dssp ----CC-CEEEEECCTTSCHHHHHHHH
T ss_pred hcCCCC-cEEEEECCCCCCHHHHHHHH
Confidence 445577 89999999999999999999
No 191
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.24 E-value=0.00035 Score=72.22 Aligned_cols=101 Identities=14% Similarity=0.205 Sum_probs=53.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhhhhh-hhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcC
Q 006974 352 RVVVITGPNTGGKTASMKTLGLASLM-SKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVS 430 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~igl~~~~-a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~ 430 (623)
..+.|+||+|+||||+++.++-.... .....++.+.. +...+...+ .. + ..........
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~-----~~~~~~~~~------~~-------~--~~~~~~~~~~ 97 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD-----FAQAMVEHL------KK-------G--TINEFRNMYK 97 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH-----HHHHHHHHH------HH-------T--CHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH-----HHHHHHHHH------Hc-------C--cHHHHHHHhc
Confidence 56899999999999999999322111 00111222110 011111111 00 0 0011111224
Q ss_pred CCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974 431 RESLVLIDEIGSGT-DPSEGVALATSILQYLRDRVGLAVVTTHY 473 (623)
Q Consensus 431 ~~~LlLLDEp~~gl-D~~~~~~l~~all~~l~~~~~~vii~TH~ 473 (623)
++.+|++||+..-. +......+.. +++.+.+.+..+|++|+.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~-~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFH-IFNTLYLLEKQIILASDR 140 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHH-HHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEcCcccccCChHHHHHHHH-HHHHHHHCCCeEEEEecC
Confidence 58999999997632 3345555665 556566666677777664
No 192
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.23 E-value=0.0001 Score=73.85 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=26.7
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhh---ceeecCCC
Q 006974 348 ECETRVVVITGPNTGGKTASMKTLGLASLMSKA---GLYLPAKN 388 (623)
Q Consensus 348 ~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~---G~~vp~~~ 388 (623)
.+| .+++|+|||||||||++|++ . |.+.|..+
T Consensus 25 ~~g-~~I~I~G~~GsGKSTl~k~L--------a~~Lg~~~~d~g 59 (252)
T 4e22_A 25 AIA-PVITVDGPSGAGKGTLCKAL--------AESLNWRLLDSG 59 (252)
T ss_dssp TTS-CEEEEECCTTSSHHHHHHHH--------HHHTTCEEEEHH
T ss_pred CCC-cEEEEECCCCCCHHHHHHHH--------HHhcCCCcCCCC
Confidence 467 89999999999999999999 4 76666544
No 193
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.22 E-value=0.00016 Score=76.49 Aligned_cols=30 Identities=30% Similarity=0.305 Sum_probs=26.4
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHHhh
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGL 373 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl 373 (623)
++++++.+| +++|+||||+||||+|++|..
T Consensus 19 ~~~~~~~~g--~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 19 PGTLNFPEG--VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp SEEEECCSE--EEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEcCC--eEEEECCCCCChhHHHHHHHH
Confidence 677888777 999999999999999999943
No 194
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.21 E-value=0.00059 Score=67.29 Aligned_cols=132 Identities=14% Similarity=0.146 Sum_probs=63.4
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhhhhhhh-----hhce--eecCCCCCCccHHHHHHHHcCCc--------hhhhcc
Q 006974 347 VECETRVVVITGPNTGGKTASMKTLGLASLMS-----KAGL--YLPAKNHPRLPWFDLILADIGDH--------QSLEQN 411 (623)
Q Consensus 347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a-----~~G~--~vp~~~~~~l~~~d~i~~~ig~~--------~~~~~~ 411 (623)
+..| +.++|.||+||||||++...-+-.... ..+. ..|... ......+++...++.. ...+..
T Consensus 73 i~~g-~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~-la~q~~~~~~~~~~~~~~~~~g~~~~~~~~ 150 (235)
T 3llm_A 73 ISQN-SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRI-SAVSVAERVAFERGEEPGKSCGYSVRFESI 150 (235)
T ss_dssp HHHC-SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHH-HHHHHHHHHHHTTTCCTTSSEEEEETTEEE
T ss_pred HhcC-CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchH-HHHHHHHHHHHHhccccCceEEEeechhhc
Confidence 3457 799999999999999988772221111 1111 123211 1122233343333321 000000
Q ss_pred -------cccccHHHHHHHHHHHhcCCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhcc
Q 006974 412 -------LSTFSGHISRIVDILELVSRESLVLIDEIGS-GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKD 481 (623)
Q Consensus 412 -------~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~-glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~ 481 (623)
+---+.|.. +..+.....+-++|++||.=. ++|..........++....+....++-+|...+ +..+..
T Consensus 151 ~~~~~~~Ivv~Tpg~l-~~~l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 151 LPRPHASIMFCTVGVL-LRKLEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp CCCSSSEEEEEEHHHH-HHHHHHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred cCCCCCeEEEECHHHH-HHHHHhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 111223332 122333578889999999965 676655544444344432222222334676654 444433
No 195
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.21 E-value=0.00012 Score=75.58 Aligned_cols=36 Identities=8% Similarity=0.057 Sum_probs=28.6
Q ss_pred ccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCC
Q 006974 345 IKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389 (623)
Q Consensus 345 l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~ 389 (623)
|.+..| ++++|+||||+||||||+++ .|...|..|.
T Consensus 164 f~~l~g-eiv~l~G~sG~GKSTll~~l--------~g~~~~~~G~ 199 (301)
T 1u0l_A 164 KEYLKG-KISTMAGLSGVGKSSLLNAI--------NPGLKLRVSE 199 (301)
T ss_dssp HHHHSS-SEEEEECSTTSSHHHHHHHH--------STTCCCC---
T ss_pred HHHhcC-CeEEEECCCCCcHHHHHHHh--------cccccccccc
Confidence 455568 89999999999999999999 7877777663
No 196
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.17 E-value=0.00018 Score=69.16 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=21.4
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
+++|.+.++ ++++|+||+||||||+.+.+
T Consensus 17 ~~~~~~~~~-~~i~l~G~~GsGKsTl~~~L 45 (199)
T 3vaa_A 17 NLYFQSNAM-VRIFLTGYMGAGKTTLGKAF 45 (199)
T ss_dssp -------CC-CEEEEECCTTSCHHHHHHHH
T ss_pred ceeEecCCC-CEEEEEcCCCCCHHHHHHHH
Confidence 888999999 89999999999999999999
No 197
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.12 E-value=0.00029 Score=73.53 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=29.2
Q ss_pred eeecCCccc--cccccccCCceE--EEEEcCCCCCHHHHHHHH
Q 006974 333 SKGISDFPV--PIDIKVECETRV--VVITGPNTGGKTASMKTL 371 (623)
Q Consensus 333 ~~~y~~~~v--~i~l~l~~g~~~--~~I~GpNgsGKSTlLk~i 371 (623)
+..||...+ .+...+..| ++ ++++||||+||||+++++
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g-~~~~~ll~Gp~G~GKTtla~~l 66 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG-KLPHLLFYGPPGTGKTSTIVAL 66 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT-CCCCEEEECSSSSSHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHH
Confidence 334444333 666777777 66 999999999999999999
No 198
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.12 E-value=0.00021 Score=69.25 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=21.3
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHH
Q 006974 348 ECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 348 ~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
.+| ++++|+|||||||||+++.+
T Consensus 6 ~~g-~~i~l~GpsGsGKsTl~~~L 28 (208)
T 3tau_A 6 ERG-LLIVLSGPSGVGKGTVREAV 28 (208)
T ss_dssp CCC-CEEEEECCTTSCHHHHHHHH
T ss_pred CCC-cEEEEECcCCCCHHHHHHHH
Confidence 357 89999999999999999999
No 199
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.10 E-value=0.00011 Score=76.21 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=25.8
Q ss_pred ccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCC
Q 006974 345 IKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKN 388 (623)
Q Consensus 345 l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~ 388 (623)
+.+.+| ++++|+||||+|||||+|++ .|...|..+
T Consensus 168 ~~~~~G-~~~~lvG~sG~GKSTLln~L--------~g~~~~~~G 202 (307)
T 1t9h_A 168 IPHFQD-KTTVFAGQSGVGKSSLLNAI--------SPELGLRTN 202 (307)
T ss_dssp GGGGTT-SEEEEEESHHHHHHHHHHHH--------CC-------
T ss_pred HhhcCC-CEEEEECCCCCCHHHHHHHh--------ccccccccc
Confidence 667788 89999999999999999999 777666655
No 200
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.09 E-value=0.0018 Score=76.15 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 006974 352 RVVVITGPNTGGKTASMKTLG 372 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~ig 372 (623)
..++|+||+|+||||+++.++
T Consensus 192 ~~vlL~G~pG~GKT~la~~la 212 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLA 212 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHH
Confidence 457999999999999999993
No 201
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.07 E-value=0.00075 Score=69.30 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.3
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHHh
Q 006974 346 KVECETRVVVITGPNTGGKTASMKTLG 372 (623)
Q Consensus 346 ~l~~g~~~~~I~GpNgsGKSTlLk~ig 372 (623)
.+..+ ..++|+||+|+||||+.++++
T Consensus 45 ~~~~~-~~vLL~Gp~GtGKT~la~ala 70 (301)
T 3cf0_A 45 GMTPS-KGVLFYGPPGCGKTLLAKAIA 70 (301)
T ss_dssp CCCCC-SEEEEECSSSSSHHHHHHHHH
T ss_pred CCCCC-ceEEEECCCCcCHHHHHHHHH
Confidence 34566 789999999999999999993
No 202
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.05 E-value=0.0021 Score=61.79 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
..++|+||.|+||||+++.+
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~ 65 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLL 65 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999998
No 203
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.04 E-value=0.00075 Score=70.61 Aligned_cols=119 Identities=17% Similarity=0.080 Sum_probs=61.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhhh-hhh---hhc---eeecCCCC-CCccHHHHHHHHcCCchhhhcccccccHHH-H-H
Q 006974 352 RVVVITGPNTGGKTASMKTLGLAS-LMS---KAG---LYLPAKNH-PRLPWFDLILADIGDHQSLEQNLSTFSGHI-S-R 421 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~igl~~-~~a---~~G---~~vp~~~~-~~l~~~d~i~~~ig~~~~~~~~~stfS~g~-~-r 421 (623)
..++|+||.|+||||+++.++-.. -.. ..+ .++.+... .....+..++..+|... +....+.+. . +
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~ 120 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRV----PFTGLSVGEVYER 120 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCC----CSSCCCHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCC----CCCCCCHHHHHHH
Confidence 689999999999999999993221 110 002 12322211 11233555666665421 111222222 2 3
Q ss_pred HHHHHHhcCCCcEEEEeCCCCCCCHH-HHHHHHHHHHHHHh----cCCcEEEEEcCchh
Q 006974 422 IVDILELVSRESLVLIDEIGSGTDPS-EGVALATSILQYLR----DRVGLAVVTTHYAD 475 (623)
Q Consensus 422 l~~~~~l~~~~~LlLLDEp~~glD~~-~~~~l~~all~~l~----~~~~~vii~TH~~~ 475 (623)
+...+.....+.+|+|||+-.-.+.. ....+.. +++... ..+.++|++|+...
T Consensus 121 l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~-l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 121 LVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYR-ITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHH-HHHGGGCC-----CEEEEECSCST
T ss_pred HHHHHhccCCeEEEEEccHhhhcccCCCChHHHh-HhhchhhcCCCceEEEEEEECCCc
Confidence 33333334457799999997543321 2233333 554433 23457888998764
No 204
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.04 E-value=8.8e-05 Score=77.30 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHH-hhh
Q 006974 353 VVVITGPNTGGKTASMKTL-GLA 374 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i-gl~ 374 (623)
+++|+|||||||||+++++ +++
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999 444
No 205
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.03 E-value=0.00042 Score=67.14 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=22.3
Q ss_pred cccccCCceEEEEEcCCCCCHHHHHHHHh
Q 006974 344 DIKVECETRVVVITGPNTGGKTASMKTLG 372 (623)
Q Consensus 344 ~l~l~~g~~~~~I~GpNgsGKSTlLk~ig 372 (623)
++.+.+| +.+|+||||+||||+|.+|.
T Consensus 18 ~i~f~~~--~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 18 VVEFKEG--INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEECCSE--EEEEECCTTSSHHHHHHHHH
T ss_pred EEEeCCC--eEEEEcCCCCCHHHHHHHHH
Confidence 4445544 89999999999999999993
No 206
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.03 E-value=0.00029 Score=72.73 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=27.6
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCC
Q 006974 346 KVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389 (623)
Q Consensus 346 ~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~ 389 (623)
.+..| ++++|+||||+|||||+|++ . ...|..+.
T Consensus 161 ~~l~G-~i~~l~G~sG~GKSTLln~l--------~-~~~~~~G~ 194 (302)
T 2yv5_A 161 DYLEG-FICILAGPSGVGKSSILSRL--------T-GEELRTQE 194 (302)
T ss_dssp HHTTT-CEEEEECSTTSSHHHHHHHH--------H-SCCCCCSC
T ss_pred hhccC-cEEEEECCCCCCHHHHHHHH--------H-HhhCcccc
Confidence 44567 89999999999999999999 6 55566653
No 207
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.03 E-value=0.00018 Score=74.48 Aligned_cols=101 Identities=18% Similarity=0.183 Sum_probs=50.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhhhhhhhhc---eeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHh
Q 006974 352 RVVVITGPNTGGKTASMKTLGLASLMSKAG---LYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILEL 428 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~igl~~~~a~~G---~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l 428 (623)
..+.|.||.|+|||+|+++++-.... +.| .|+.+. .+++.+...++.. . ... ....
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~~-----~l~~~l~~~~~~~-~----~~~----------~~~~ 211 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHFP-----SFAIDVKNAISNG-S----VKE----------EIDA 211 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEHH-----HHHHHHHCCCC---------CC----------TTHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEHH-----HHHHHHHHHhccc-h----HHH----------HHHH
Confidence 67899999999999999999443220 122 111110 1122221111110 0 001 1112
Q ss_pred cCCCcEEEEeCCCCC-CCHHHHHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974 429 VSRESLVLIDEIGSG-TDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (623)
Q Consensus 429 ~~~~~LlLLDEp~~g-lD~~~~~~l~~all~~l~~~~~~vii~TH~ 473 (623)
..++++|+|||++.. +++.....+...+++.....+..+|+||+.
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~ 257 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNY 257 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESS
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 345789999999642 333333335444555543335677888886
No 208
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.03 E-value=0.00062 Score=75.11 Aligned_cols=40 Identities=15% Similarity=0.269 Sum_probs=29.3
Q ss_pred EceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 329 ~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
++++...|.+..+ ++++.++.| ++|+||||+|||||+|++
T Consensus 43 l~~lv~~l~~~~~~~~lg~~ip~G---vLL~GppGtGKTtLaraI 84 (499)
T 2dhr_A 43 LKEIVEFLKNPSRFHEMGARIPKG---VLLVGPPGVGKTHLARAV 84 (499)
T ss_dssp HHHHHHHHHCGGGTTTTSCCCCSE---EEEECSSSSSHHHHHHHH
T ss_pred HHHHHHHhhchhhhhhccCCCCce---EEEECCCCCCHHHHHHHH
Confidence 3444444443333 677777766 799999999999999999
No 209
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.03 E-value=0.0028 Score=65.19 Aligned_cols=40 Identities=23% Similarity=0.225 Sum_probs=29.5
Q ss_pred eeeeecCCcccc-ccccccCCceEEEEEcCCCCCHHHHHHHHh
Q 006974 331 SLSKGISDFPVP-IDIKVECETRVVVITGPNTGGKTASMKTLG 372 (623)
Q Consensus 331 ~l~~~y~~~~v~-i~l~l~~g~~~~~I~GpNgsGKSTlLk~ig 372 (623)
++.+.|++...+ +++... + .+++++||||+||||++..++
T Consensus 79 ~l~~~~~~~~~~~i~~~~~-~-~vi~i~G~~G~GKTT~~~~la 119 (297)
T 1j8m_F 79 ELSNLFGGDKEPKVIPDKI-P-YVIMLVGVQGTGKTTTAGKLA 119 (297)
T ss_dssp HHHHHTTCSCCCCCSCSSS-S-EEEEEECSSCSSTTHHHHHHH
T ss_pred HHHHHhccccccccccCCC-C-eEEEEECCCCCCHHHHHHHHH
Confidence 344445443335 667665 6 899999999999999999993
No 210
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.00 E-value=0.0008 Score=78.65 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=23.8
Q ss_pred cccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 344 DIKVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 344 ~l~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
++.+.++ +.++|+||||+||||+++++
T Consensus 232 ~l~i~~~-~~vLL~Gp~GtGKTtLaral 258 (806)
T 1ypw_A 232 AIGVKPP-RGILLYGPPGTGKTLIARAV 258 (806)
T ss_dssp SSCCCCC-CEEEECSCTTSSHHHHHHHH
T ss_pred hcCCCCC-CeEEEECcCCCCHHHHHHHH
Confidence 3456777 78999999999999999999
No 211
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.97 E-value=0.00039 Score=64.93 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=20.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHH
Q 006974 349 CETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 349 ~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
+| .+++|+|||||||||+++.+
T Consensus 7 ~g-~~i~l~G~~GsGKSTl~~~l 28 (175)
T 1knq_A 7 DH-HIYVLMGVSGSGKSAVASEV 28 (175)
T ss_dssp TS-EEEEEECSTTSCHHHHHHHH
T ss_pred CC-cEEEEEcCCCCCHHHHHHHH
Confidence 46 89999999999999999999
No 212
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.97 E-value=0.00013 Score=73.89 Aligned_cols=41 Identities=15% Similarity=0.262 Sum_probs=32.6
Q ss_pred EEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 328 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 328 ~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
+++++.+.|++..+ ++++.++.| ++|+||||+|||||++++
T Consensus 51 ~l~~l~~~~~~~~~l~~~~~~~~~g---vll~Gp~GtGKTtl~~~i 93 (278)
T 1iy2_A 51 ELKEIVEFLKNPSRFHEMGARIPKG---VLLVGPPGVGKTHLARAV 93 (278)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCCE---EEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCe---EEEECCCcChHHHHHHHH
Confidence 35566777765444 778888766 799999999999999999
No 213
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.97 E-value=0.0003 Score=69.27 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=22.8
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 346 KVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 346 ~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
...+| .+++|.|||||||||+++++
T Consensus 16 ~~~~g-~~i~i~G~~GsGKSTl~~~L 40 (230)
T 2vp4_A 16 EGTQP-FTVLIEGNIGSGKTTYLNHF 40 (230)
T ss_dssp TTCCC-EEEEEECSTTSCHHHHHHTT
T ss_pred CCCCc-eEEEEECCCCCCHHHHHHHH
Confidence 44678 89999999999999999999
No 214
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.89 E-value=0.0097 Score=61.62 Aligned_cols=123 Identities=14% Similarity=0.165 Sum_probs=67.9
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhhhhhh---hhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHH
Q 006974 347 VECETRVVVITGPNTGGKTASMKTLGLASLM---SKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIV 423 (623)
Q Consensus 347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~---a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~ 423 (623)
+++| ++.|.||.|+|||||+-++...... .....|+-.++. +.. ....++|....---.....++++..+.
T Consensus 26 l~~G--iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s--~~~--~ra~~lGvd~d~llv~~~~~~E~~~l~ 99 (333)
T 3io5_A 26 MQSG--LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG--ITP--AYLRSMGVDPERVIHTPVQSLEQLRID 99 (333)
T ss_dssp BCSE--EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCC--CCH--HHHHHTTCCGGGEEEEECSBHHHHHHH
T ss_pred CcCC--eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccch--hhH--HHHHHhCCCHHHeEEEcCCCHHHHHHH
Confidence 4455 6899999999999997776222211 123356665542 222 235677764221111222344443233
Q ss_pred HHHHh----cCCCcEEEEeCCCCCCC-------HH--------HHHHHHHH---HHHHHhcCCcEEEEEcCchh
Q 006974 424 DILEL----VSRESLVLIDEIGSGTD-------PS--------EGVALATS---ILQYLRDRVGLAVVTTHYAD 475 (623)
Q Consensus 424 ~~~~l----~~~~~LlLLDEp~~glD-------~~--------~~~~l~~a---ll~~l~~~~~~vii~TH~~~ 475 (623)
.+..+ ..+|++|++|=.++-.. +. ....+..+ +...+++.++++|+|-|-..
T Consensus 100 i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k 173 (333)
T 3io5_A 100 MVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYE 173 (333)
T ss_dssp HHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC--
T ss_pred HHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCeee
Confidence 33222 35789999999987752 11 11122232 34456678999999999755
No 215
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.88 E-value=0.00037 Score=64.77 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+|||||||||+++.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~L 24 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQL 24 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 68999999999999999999
No 216
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.88 E-value=0.0028 Score=63.04 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.-++|+||+|+||||+++.+
T Consensus 46 ~~vll~G~~GtGKT~la~~l 65 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAI 65 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHH
Confidence 34789999999999999999
No 217
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.86 E-value=0.00047 Score=72.32 Aligned_cols=44 Identities=14% Similarity=0.055 Sum_probs=33.2
Q ss_pred ceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhh
Q 006974 330 GSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA 374 (623)
Q Consensus 330 ~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~ 374 (623)
+++.+.|+...+ ++++...++ .+++|+|+||+||||+++.+ +.+
T Consensus 34 ~~~~~~~~~~~~~~~l~~~~~~~-~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 34 RHPRHQALSTQLLDAIMPYCGNT-LRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CCHHHHHHHHHHHHHHGGGCSCS-EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCchhhhHHHHHHHhCCcccCCC-EEEEEEcCCCCCHHHHHHHHHHHH
Confidence 344444543333 677888888 89999999999999999999 444
No 218
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.86 E-value=0.0004 Score=66.84 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=22.1
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 347 VECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 347 l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
..+| .+++|+|||||||||+++.+
T Consensus 19 ~~~~-~~i~i~G~~GsGKstl~~~l 42 (201)
T 1rz3_A 19 TAGR-LVLGIDGLSRSGKTTLANQL 42 (201)
T ss_dssp CSSS-EEEEEEECTTSSHHHHHHHH
T ss_pred cCCC-eEEEEECCCCCCHHHHHHHH
Confidence 4567 89999999999999999999
No 219
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.85 E-value=0.00053 Score=66.39 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=21.4
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHH
Q 006974 348 ECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 348 ~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
.+| ++++|+||||+|||||++.+
T Consensus 17 ~~g-~~ivl~GPSGaGKsTL~~~L 39 (197)
T 3ney_A 17 QGR-KTLVLIGASGVGRSHIKNAL 39 (197)
T ss_dssp CSC-CEEEEECCTTSSHHHHHHHH
T ss_pred CCC-CEEEEECcCCCCHHHHHHHH
Confidence 467 89999999999999999999
No 220
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.85 E-value=0.00046 Score=68.07 Aligned_cols=45 Identities=16% Similarity=0.062 Sum_probs=30.1
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCcEEEEEcCc
Q 006974 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD--RVGLAVVTTHY 473 (623)
Q Consensus 428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~--~~~~vii~TH~ 473 (623)
...+++.+|+..+.+..+..+...+.. +.+.+.. ...++|+.||-
T Consensus 109 ~~~~~~~~l~v~d~~~~~~~~~~~l~~-~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 109 TSPGPHALLLVVPLGRYTEEEHKATEK-ILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TTTCCSEEEEEEETTCCSSHHHHHHHH-HHHHHHHHHGGGEEEEEECG
T ss_pred cCCCCcEEEEEeeCCCCCHHHHHHHHH-HHHHhhhhccceEEEEEeCC
Confidence 456788888888877787776666655 5544332 12578888884
No 221
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.82 E-value=0.0039 Score=67.32 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=29.1
Q ss_pred eeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHHh
Q 006974 331 SLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLG 372 (623)
Q Consensus 331 ~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~ig 372 (623)
++++.|+...-++++. ++ ++++++||||+||||++..++
T Consensus 81 ~L~~~~~~~~~~i~l~--~~-~vi~i~G~~GsGKTT~~~~LA 119 (425)
T 2ffh_A 81 ALKEALGGEARLPVLK--DR-NLWFLVGLQGSGKTTTAAKLA 119 (425)
T ss_dssp HHHHHTTSSCCCCCCC--SS-EEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHhCCCcccccCC--CC-eEEEEECCCCCCHHHHHHHHH
Confidence 3445555433356666 66 899999999999999999993
No 222
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=96.76 E-value=0.0048 Score=51.75 Aligned_cols=60 Identities=12% Similarity=0.135 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhch-hhHHHHHHHHHhHHHHHhHhhhHHhhc
Q 006974 556 EERRKLESQARTAASLHAEIMDLYREDSTSASI-SVYRYQFAVTSTLSKVDFDAIPNIDQC 615 (623)
Q Consensus 556 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (623)
+++++++.+..+|++++.++..++.++.++.+| .|+.+++++..++.+++++++.+|++-
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erW 79 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERW 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999999999999999876 589999999999999999999999874
No 223
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.76 E-value=0.00048 Score=73.34 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=27.5
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
++++.+++| ++++|+||||+|||||++++
T Consensus 161 ~~~~~i~~~-~~i~l~G~~GsGKSTl~~~l 189 (377)
T 1svm_A 161 CMVYNIPKK-RYWLFKGPIDSGKTTLAAAL 189 (377)
T ss_dssp HHHHCCTTC-CEEEEECSTTSSHHHHHHHH
T ss_pred hcccccCCC-CEEEEECCCCCCHHHHHHHH
Confidence 778899999 89999999999999999999
No 224
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.76 E-value=0.0015 Score=74.71 Aligned_cols=119 Identities=16% Similarity=0.102 Sum_probs=60.7
Q ss_pred ccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeecCCCCCCccHHH-HHHHHcCCc--------h-----hhh
Q 006974 345 IKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFD-LILADIGDH--------Q-----SLE 409 (623)
Q Consensus 345 l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp~~~~~~l~~~d-~i~~~ig~~--------~-----~~~ 409 (623)
+.+.++ +.++|+|+||+|||||++.+ +........|... .+.....+.. ..-..+... . .++
T Consensus 4 ~~~~~~-~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~--~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliD 80 (665)
T 2dy1_A 4 EGGAMI-RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVE--EGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLD 80 (665)
T ss_dssp --CCCE-EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG--GTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEE
T ss_pred CccCCC-cEEEEECCCCChHHHHHHHHHHhcCCCCccceec--CCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEe
Confidence 455677 89999999999999999999 3222111122110 0100000000 000001100 0 001
Q ss_pred c-ccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH
Q 006974 410 Q-NLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL 476 (623)
Q Consensus 410 ~-~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l 476 (623)
. +...|+.... . .....+.-++++| ++.|+++.....+.. +...+..+|++.|.+++
T Consensus 81 TpG~~~f~~~~~---~-~l~~ad~~ilVvD-~~~g~~~qt~~~~~~-----~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 81 APGYGDFVGEIR---G-ALEAADAALVAVS-AEAGVQVGTERAWTV-----AERLGLPRMVVVTKLDK 138 (665)
T ss_dssp CCCSGGGHHHHH---H-HHHHCSEEEEEEE-TTTCSCHHHHHHHHH-----HHHTTCCEEEEEECGGG
T ss_pred CCCccchHHHHH---H-HHhhcCcEEEEEc-CCcccchhHHHHHHH-----HHHccCCEEEEecCCch
Confidence 1 1112332211 1 1134677899999 999999887644332 33346778888888774
No 225
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.73 E-value=0.01 Score=73.76 Aligned_cols=121 Identities=18% Similarity=0.243 Sum_probs=66.2
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhhhhhh-hhhceeecCCCCCCccHHHHHHHHcCCch-hhhcccccccHHHH-HHH
Q 006974 347 VECETRVVVITGPNTGGKTASMKTLGLASLM-SKAGLYLPAKNHPRLPWFDLILADIGDHQ-SLEQNLSTFSGHIS-RIV 423 (623)
Q Consensus 347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~-a~~G~~vp~~~~~~l~~~d~i~~~ig~~~-~~~~~~stfS~g~~-rl~ 423 (623)
+.+| ++++|.||+|+|||||+..++..... .....|+-.+. ..-.. ....+|..- .+ .....-+..+. ...
T Consensus 729 l~~G-~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ee-s~~ql---~A~~lGvd~~~L-~i~~~~~leei~~~l 802 (1706)
T 3cmw_A 729 LPMG-RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH-ALDPI---YARKLGVDIDNL-LCSQPDTGEQALEIC 802 (1706)
T ss_dssp EETT-SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTS-CCCHH---HHHHTTCCGGGC-EEECCSSHHHHHHHH
T ss_pred cCCC-ceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccc-hHHHH---HHHHcCCChhhe-EEecCCcHHHHHHHH
Confidence 6788 89999999999999999999443322 11234544443 22122 134455321 11 01111233222 111
Q ss_pred HHHHhcCCCcEEEEeCCCCCCC-HH------------HHHHHHH---HHHHHHhcCCcEEEEEcCc
Q 006974 424 DILELVSRESLVLIDEIGSGTD-PS------------EGVALAT---SILQYLRDRVGLAVVTTHY 473 (623)
Q Consensus 424 ~~~~l~~~~~LlLLDEp~~glD-~~------------~~~~l~~---all~~l~~~~~~vii~TH~ 473 (623)
.-+....+|++|++|++..-.. .. ....+.. .+...+++.+++||+++|-
T Consensus 803 ~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql 868 (1706)
T 3cmw_A 803 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 868 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECE
T ss_pred HHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 1111236899999999987662 10 1122333 2333456678999999884
No 226
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.73 E-value=0.0039 Score=62.80 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.3
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHH
Q 006974 348 ECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 348 ~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
..+ ..+.|+||.|+||||+++.+
T Consensus 49 ~~~-~~~ll~G~~GtGKT~la~~l 71 (285)
T 3h4m_A 49 EPP-KGILLYGPPGTGKTLLAKAV 71 (285)
T ss_dssp CCC-SEEEEESSSSSSHHHHHHHH
T ss_pred CCC-CeEEEECCCCCcHHHHHHHH
Confidence 344 67899999999999999999
No 227
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.68 E-value=0.0032 Score=64.08 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 006974 352 RVVVITGPNTGGKTASMKTLG 372 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~ig 372 (623)
..++|+||+|+||||+.+.++
T Consensus 48 ~~~ll~G~~GtGKt~la~~la 68 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLA 68 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHH
Confidence 578999999999999999993
No 228
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.67 E-value=0.0019 Score=63.72 Aligned_cols=123 Identities=18% Similarity=0.153 Sum_probs=64.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhhhhhhh-h-hceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHH
Q 006974 349 CETRVVVITGPNTGGKTASMKTLGLASLMS-K-AGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDIL 426 (623)
Q Consensus 349 ~g~~~~~I~GpNgsGKSTlLk~igl~~~~a-~-~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~ 426 (623)
+| .+++++||-|+||||++-.+..-..-+ + ...+-|... .. + ..++..++|..-.. ..+... ..-...+.
T Consensus 11 ~G-~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d-~r-~-~~~i~srlG~~~~~-~~~~~~---~~i~~~i~ 82 (223)
T 2b8t_A 11 IG-WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKID-TR-S-IRNIQSRTGTSLPS-VEVESA---PEILNYIM 82 (223)
T ss_dssp CC-EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-GG-G-CSSCCCCCCCSSCC-EEESST---HHHHHHHH
T ss_pred Cc-EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccC-ch-H-HHHHHHhcCCCccc-cccCCH---HHHHHHHH
Confidence 46 799999999999999886662221111 1 122333432 12 1 12344455542110 111111 11112222
Q ss_pred Hh--cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCch-----------hHHhhccccce
Q 006974 427 EL--VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA-----------DLSCLKDKDTR 485 (623)
Q Consensus 427 ~l--~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~-----------~l~~~~~~~~~ 485 (623)
.. ..++++|++||.-. +++. +.+ .+..+.+.+..||++-|+. ++..+||.+..
T Consensus 83 ~~~~~~~~dvViIDEaQ~-l~~~----~ve-~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~e 148 (223)
T 2b8t_A 83 SNSFNDETKVIGIDEVQF-FDDR----ICE-VANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITK 148 (223)
T ss_dssp STTSCTTCCEEEECSGGG-SCTH----HHH-HHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEE
T ss_pred HHhhCCCCCEEEEecCcc-CcHH----HHH-HHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEee
Confidence 22 24589999999964 5543 222 3344555688999999932 24456776554
No 229
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.66 E-value=0.0084 Score=64.94 Aligned_cols=99 Identities=11% Similarity=0.058 Sum_probs=49.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhhhhhhhhc---eeecCCCCCCccHHHHHHH---HcCCchhhhcccccccHHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTLGLASLMSKAG---LYLPAKNHPRLPWFDLILA---DIGDHQSLEQNLSTFSGHISRIVDI 425 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~igl~~~~a~~G---~~vp~~~~~~l~~~d~i~~---~ig~~~~~~~~~stfS~g~~rl~~~ 425 (623)
.+++++||+|+||||++..++.. +++.| .++.++. .+...++++-. ..|..-........ ....-+-.+.
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~--l~~~G~kVllv~~D~-~R~aa~eqL~~~~~~~gvpv~~~~~~~d-p~~i~~~al~ 176 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARY--FQKRGYKVGVVCSDT-WRPGAYHQLRQLLDRYHIEVFGNPQEKD-AIKLAKEGVD 176 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEEECCC-SSTHHHHHHHHHHGGGTCEEECCTTCCC-HHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCC-cchhHHHHHHHHHHhcCCcEEecCCCCC-HHHHHHHHHH
Confidence 79999999999999999888422 22233 3444443 23333443322 22221000000000 0111111111
Q ss_pred HHhcCCCcEEEEeCCCCC-CCHHHHHHHHH
Q 006974 426 LELVSRESLVLIDEIGSG-TDPSEGVALAT 454 (623)
Q Consensus 426 ~~l~~~~~LlLLDEp~~g-lD~~~~~~l~~ 454 (623)
.....+.+++|+|.|+.. .|...-..+..
T Consensus 177 ~a~~~~~DvVIIDTaGrl~~d~~lm~el~~ 206 (443)
T 3dm5_A 177 YFKSKGVDIIIVDTAGRHKEDKALIEEMKQ 206 (443)
T ss_dssp HHHHTTCSEEEEECCCCSSCCHHHHHHHHH
T ss_pred HHHhCCCCEEEEECCCcccchHHHHHHHHH
Confidence 223356899999999854 45544444444
No 230
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.65 E-value=0.0024 Score=65.30 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
..++|.||.|+|||++.+.+
T Consensus 37 ~~lLl~GppGtGKT~la~ai 56 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELV 56 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 56888999999999999999
No 231
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.62 E-value=0.001 Score=64.04 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.8
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 346 KVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 346 ~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
.+.++ .+++|+||+||||||+.+.+
T Consensus 17 ~~~~~-~~i~i~G~~GsGKSTl~~~L 41 (207)
T 2qt1_A 17 RGSKT-FIIGISGVTNSGKTTLAKNL 41 (207)
T ss_dssp CSCCC-EEEEEEESTTSSHHHHHHHH
T ss_pred cCCCC-eEEEEECCCCCCHHHHHHHH
Confidence 45667 89999999999999999999
No 232
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.60 E-value=0.0099 Score=64.44 Aligned_cols=118 Identities=14% Similarity=0.057 Sum_probs=65.0
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHHhhhhhhh--hhceeecCCCCCCccHHHHHHHH-cCCch-hhhcccccccHHHH-
Q 006974 346 KVECETRVVVITGPNTGGKTASMKTLGLASLMS--KAGLYLPAKNHPRLPWFDLILAD-IGDHQ-SLEQNLSTFSGHIS- 420 (623)
Q Consensus 346 ~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a--~~G~~vp~~~~~~l~~~d~i~~~-ig~~~-~~~~~~stfS~g~~- 420 (623)
-+.+| ++++|.|++|+|||||+..++...... ....|+..+. ..-.+..+++.. .|... .+. -..|+.+..
T Consensus 196 Gl~~G-~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~-~~~~l~~R~~~~~~~i~~~~l~--~g~l~~~~~~ 271 (444)
T 2q6t_A 196 TLGPG-SLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM-PAAQLTLRMMCSEARIDMNRVR--LGQLTDRDFS 271 (444)
T ss_dssp CCCTT-CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS-CHHHHHHHHHHHHTTCCTTTCC--GGGCCHHHHH
T ss_pred CcCCC-cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC-CHHHHHHHHHHHHcCCCHHHHh--CCCCCHHHHH
Confidence 36678 899999999999999999985544331 1223433322 212233344322 23221 111 135777766
Q ss_pred HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcC
Q 006974 421 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTH 472 (623)
Q Consensus 421 rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH 472 (623)
++..+...+...++.+.|+| ++++.+-.+.+ .....+.+..+||+-+
T Consensus 272 ~~~~a~~~l~~~~l~i~d~~--~~s~~~l~~~~---~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 272 RLVDVASRLSEAPIYIDDTP--DLTLMEVRARA---RRLVSQNQVGLIIIDY 318 (444)
T ss_dssp HHHHHHHHHHTSCEEEECCT--TCBHHHHHHHH---HHHHHHSCCCEEEEEC
T ss_pred HHHHHHHHHhcCCEEEECCC--CCCHHHHHHHH---HHHHHHcCCCEEEEcC
Confidence 67777665566778888876 44444433322 2222234555555543
No 233
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.56 E-value=0.001 Score=63.85 Aligned_cols=20 Identities=30% Similarity=0.336 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+|||||||||+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 234
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.56 E-value=0.00036 Score=65.97 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
++++|+||||||||||++.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L 22 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRM 22 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999999
No 235
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.53 E-value=0.00027 Score=65.80 Aligned_cols=20 Identities=30% Similarity=0.336 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
..++|+||.|+||||+++.+
T Consensus 44 ~~vll~G~~G~GKT~la~~~ 63 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGL 63 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHH
Confidence 57799999999999999998
No 236
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.53 E-value=0.0027 Score=65.79 Aligned_cols=43 Identities=14% Similarity=0.245 Sum_probs=28.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (623)
Q Consensus 430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~ 475 (623)
.++.+|++|| ...+++....+|.. +++.... ...+|++|++..
T Consensus 132 ~~~~vliiDE-~~~l~~~~~~~Ll~-~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 132 PPYKIIILDE-ADSMTADAQSALRR-TMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp CSCEEEEETT-GGGSCHHHHHHHHH-HHHHTTT-TEEEEEEESCGG
T ss_pred CCceEEEEEC-CCccCHHHHHHHHH-HHHhcCC-CceEEEEeCchh
Confidence 4567999999 66788877777766 4443322 345666776643
No 237
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.51 E-value=0.018 Score=71.67 Aligned_cols=122 Identities=18% Similarity=0.215 Sum_probs=69.1
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhhhhh-hhhhceeecCCCCCCccHHHHHHHHcCCch-hhhcccccccHHHH-HHH
Q 006974 347 VECETRVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGDHQ-SLEQNLSTFSGHIS-RIV 423 (623)
Q Consensus 347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~-~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~-~~~~~~stfS~g~~-rl~ 423 (623)
+++| +++.|.||.|+|||||.-++..... ......|+..+.. .... ....+|..- .+. ....-+.++- ...
T Consensus 380 l~~G-~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s--~~~~--~a~~lGvd~~~L~-i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 380 LPMG-RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA--LDPI--YARKLGVDIDNLL-CSQPDTGEQALEIC 453 (1706)
T ss_dssp EETT-SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSC--CCHH--HHHHTTCCGGGCE-EECCSSHHHHHHHH
T ss_pred cCCC-cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCc--hHHH--HHHHcCCCHHHeE-EcCCCCHHHHHHHH
Confidence 5688 8999999999999999988833322 2233456655542 2211 245566431 111 1111123322 222
Q ss_pred HHHHhcCCCcEEEEeCCCCCCCHH--------------HH--HHHHHHHHHHHhcCCcEEEEEcCch
Q 006974 424 DILELVSRESLVLIDEIGSGTDPS--------------EG--VALATSILQYLRDRVGLAVVTTHYA 474 (623)
Q Consensus 424 ~~~~l~~~~~LlLLDEp~~glD~~--------------~~--~~l~~all~~l~~~~~~vii~TH~~ 474 (623)
..+....++++|++|.++.-.... .+ ..+...+...+++.++++|+++|-.
T Consensus 454 ~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~ 520 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 520 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEE
T ss_pred HHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence 222234689999999998876411 11 1222224444467789999998863
No 238
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.50 E-value=0.0014 Score=62.11 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=23.2
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
|+++....+ ..++|+|+.||||||+.+.+
T Consensus 2 ~~~~~~~~~-~~I~l~G~~GsGKSTv~~~L 30 (184)
T 1y63_A 2 PGSMEQPKG-INILITGTPGTGKTSMAEMI 30 (184)
T ss_dssp ----CCCSS-CEEEEECSTTSSHHHHHHHH
T ss_pred CcCcCCCCC-CEEEEECCCCCCHHHHHHHH
Confidence 456777778 89999999999999999998
No 239
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.49 E-value=0.00034 Score=65.09 Aligned_cols=20 Identities=35% Similarity=0.356 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
..++|+||.|+||||+++.+
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~ 63 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGL 63 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHH
Confidence 57899999999999999998
No 240
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.49 E-value=0.0011 Score=70.11 Aligned_cols=30 Identities=30% Similarity=0.402 Sum_probs=24.6
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHHhh
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGL 373 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl 373 (623)
+.++++.+| +.+|+||||+||||+|-+|.+
T Consensus 18 ~~~i~f~~g--l~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 18 NSRIKFEKG--IVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEECCSE--EEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEecCCC--eEEEECCCCCCHHHHHHHHHH
Confidence 345556555 899999999999999999965
No 241
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.48 E-value=0.00097 Score=65.81 Aligned_cols=122 Identities=21% Similarity=0.147 Sum_probs=61.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhc---eeecCCCCCCccHHHHHHHHcCCchhhhcccccccH---HHHHH
Q 006974 349 CETRVVVITGPNTGGKTASMKTLGLASLMSKAG---LYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG---HISRI 422 (623)
Q Consensus 349 ~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G---~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~---g~~rl 422 (623)
+|.-.+.+.|+-|+||||++-.+|.... +.| .++-.+.......+. .+ -|+.. .....-.+.+ ++..+
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~--~~G~~V~v~d~D~q~~~~~~a-l~--~gl~~-~~~~~~~~~~~~~~e~~l 77 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQL--RQGVRVMAGVVETHGRAETEA-LL--NGLPQ-QPLLRTEYRGMTLEEMDL 77 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCCTTCHHHHH-HH--TTSCB-CCCEEEEETTEEEEECCH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHH--HCCCCEEEEEeCCCCChhHHH-Hh--cCccc-cCcceeecCCcccccccH
Confidence 4533578899999999999766643322 233 222222211222222 11 12221 0001111111 11112
Q ss_pred HHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHh
Q 006974 423 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC 478 (623)
Q Consensus 423 ~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~ 478 (623)
..++. ..|+++|+|||+.--.+..+..+....+..+...+.-++.|+|-..+..
T Consensus 78 ~~~L~--~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~es 131 (228)
T 2r8r_A 78 DALLK--AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLES 131 (228)
T ss_dssp HHHHH--HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGG
T ss_pred HHHHh--cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcccccccc
Confidence 22222 4799999999996434444444444344556666778889998654433
No 242
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.46 E-value=0.0012 Score=63.13 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
+++|+|+|||||||+.+.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L 21 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMF 21 (204)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 6899999999999999999
No 243
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.40 E-value=0.02 Score=56.44 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 006974 352 RVVVITGPNTGGKTASMKTLG 372 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~ig 372 (623)
..++|+||.|+||||+.+.++
T Consensus 40 ~~vll~G~~GtGKT~la~~la 60 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVA 60 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 568899999999999999993
No 244
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.37 E-value=0.0015 Score=63.35 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+||+||||||+.+.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L 25 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAM 25 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999999
No 245
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.35 E-value=0.013 Score=57.78 Aligned_cols=114 Identities=13% Similarity=0.063 Sum_probs=58.0
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhh--hceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHH
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSK--AGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHI 419 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~--~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~ 419 (623)
|....-..| .+.+++||=|+||||.|-....-...+. .-.+.|... .+.+ ..+.+++|..-... .+....-
T Consensus 11 p~~~~~~~g-~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D-~Ryg--~~i~sr~G~~~~a~-~i~~~~d-- 83 (234)
T 2orv_A 11 PGSPSKTRG-QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD-TRYS--SSFCTHDRNTMEAL-PACLLRD-- 83 (234)
T ss_dssp -------CC-EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC-CCC-------------CEEE-EESSGGG--
T ss_pred CCCCCCCce-EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC-ccch--HHHHhhcCCeeEEE-ecCCHHH--
Confidence 333334457 8999999999999987655422222221 123446554 3444 56777776542111 1222211
Q ss_pred HHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCch
Q 006974 420 SRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (623)
Q Consensus 420 ~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~ 474 (623)
+...+.+.++|++||.---.+ +.+ +++.+.+.|..||++-++.
T Consensus 84 -----i~~~~~~~dvViIDEaQF~~~------v~e-l~~~l~~~gi~VI~~GL~~ 126 (234)
T 2orv_A 84 -----VAQEALGVAVIGIDEGQFFPD------IVE-FCEAMANAGKTVIVAALDG 126 (234)
T ss_dssp -----GHHHHTTCSEEEESSGGGCTT------HHH-HHHHHHHTTCEEEEECCSB
T ss_pred -----HHHHhccCCEEEEEchhhhhh------HHH-HHHHHHhCCCEEEEEeccc
Confidence 222336789999999877654 333 5555666788999999993
No 246
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.35 E-value=0.015 Score=56.73 Aligned_cols=46 Identities=15% Similarity=0.062 Sum_probs=33.0
Q ss_pred cCCCcEEEEeCCCC----CCCHHHHHHHHHHHHHHHhcCCcEEEEEcCch
Q 006974 429 VSRESLVLIDEIGS----GTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (623)
Q Consensus 429 ~~~~~LlLLDEp~~----glD~~~~~~l~~all~~l~~~~~~vii~TH~~ 474 (623)
..+++++++|-.+. .-+......+...+....++.++++++++|-.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~ 182 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEe
Confidence 46788999997642 22455555666667777777899999999864
No 247
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.34 E-value=0.021 Score=71.95 Aligned_cols=119 Identities=16% Similarity=0.174 Sum_probs=66.1
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhhhhhh-hhhceeecCCCCCCccHHHHHHHHcCCc-hhhhcccccccHHHHHHHH
Q 006974 347 VECETRVVVITGPNTGGKTASMKTLGLASLM-SKAGLYLPAKNHPRLPWFDLILADIGDH-QSLEQNLSTFSGHISRIVD 424 (623)
Q Consensus 347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~-a~~G~~vp~~~~~~l~~~d~i~~~ig~~-~~~~~~~stfS~g~~rl~~ 424 (623)
+++| +.+.|.||.|+|||||...++..... .....|+..++ ..-+.+ ...+|.. +.+ .++.---+++-+..
T Consensus 1424 i~~g-~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~-~~~~l~---a~~~G~dl~~l--~v~~~~~~E~~l~~ 1496 (2050)
T 3cmu_A 1424 LPMG-RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH-ALDPIY---ARKLGVDIDNL--LCSQPDTGEQALEI 1496 (2050)
T ss_dssp EETT-SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS-CCCHHH---HHHTTCCTTTC--EEECCSSHHHHHHH
T ss_pred ccCC-eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccc-ccCHHH---HHHcCCCchhc--eeecCChHHHHHHH
Confidence 5678 89999999999999999999554332 22334665554 222332 4455522 111 11111112332222
Q ss_pred HHH--hcCCCcEEEEeCCCCCCCHH--------------HH--HHHHHHHHHHHhcCCcEEEEEcC
Q 006974 425 ILE--LVSRESLVLIDEIGSGTDPS--------------EG--VALATSILQYLRDRVGLAVVTTH 472 (623)
Q Consensus 425 ~~~--l~~~~~LlLLDEp~~glD~~--------------~~--~~l~~all~~l~~~~~~vii~TH 472 (623)
+.. -...|++|++||...-+-.. ++ ..+...+..++.++++++|+|-.
T Consensus 1497 ~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq 1562 (2050)
T 3cmu_A 1497 CDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1562 (2050)
T ss_dssp HHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred HHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEcc
Confidence 222 24789999999986444321 11 22333366777777777766643
No 248
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.29 E-value=0.0021 Score=60.17 Aligned_cols=22 Identities=32% Similarity=0.293 Sum_probs=20.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHH
Q 006974 349 CETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 349 ~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
+| .+++|+|++||||||+.+.+
T Consensus 4 ~g-~~i~l~G~~GsGKST~~~~L 25 (179)
T 2pez_A 4 RG-CTVWLTGLSGAGKTTVSMAL 25 (179)
T ss_dssp CC-EEEEEECCTTSSHHHHHHHH
T ss_pred CC-cEEEEECCCCCCHHHHHHHH
Confidence 46 79999999999999999999
No 249
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.29 E-value=0.0012 Score=73.80 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=23.4
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 346 KVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 346 ~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
.+.+| .+++|+|+|||||||++|+|
T Consensus 365 ~~~~G-~iI~LiG~sGSGKSTLar~L 389 (552)
T 3cr8_A 365 RERQG-FTVFFTGLSGAGKSTLARAL 389 (552)
T ss_dssp GGGSC-EEEEEEESSCHHHHHHHHHH
T ss_pred ccccc-eEEEEECCCCChHHHHHHHH
Confidence 56788 89999999999999999999
No 250
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.22 E-value=0.00086 Score=74.31 Aligned_cols=31 Identities=23% Similarity=0.453 Sum_probs=26.6
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHHhhh
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLA 374 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~ 374 (623)
+++|.+.+| +.+|+|+||+||||+|.+|.++
T Consensus 53 ~~~l~f~~g--~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 53 QLELELGGG--FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp CEEEECCCS--EEEEEESHHHHHHHHTHHHHHH
T ss_pred eEEEecCCC--eEEEEcCCCCCHHHHHHHHHHH
Confidence 566777777 8999999999999999999554
No 251
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.17 E-value=0.021 Score=59.85 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
..++|+||.|+||||+.+.+
T Consensus 118 ~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 57899999999999999999
No 252
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.15 E-value=0.021 Score=62.78 Aligned_cols=28 Identities=11% Similarity=0.064 Sum_probs=24.2
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhhhh
Q 006974 347 VECETRVVVITGPNTGGKTASMKTLGLAS 375 (623)
Q Consensus 347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~ 375 (623)
+.+| ++++|.|++|+|||||+-.++...
T Consensus 239 l~~G-~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 239 ARGG-EVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp CCTT-CEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cCCC-eEEEEeecCCCCchHHHHHHHHHH
Confidence 6678 899999999999999998885443
No 253
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.13 E-value=0.0022 Score=61.57 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.7
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 347 VECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 347 l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
+.+| .+++|+||+||||||+.+.+
T Consensus 9 ~~~~-~~i~l~G~sGsGKsTl~~~L 32 (204)
T 2qor_A 9 MARI-PPLVVCGPSGVGKGTLIKKV 32 (204)
T ss_dssp CCCC-CCEEEECCTTSCHHHHHHHH
T ss_pred cccC-CEEEEECCCCCCHHHHHHHH
Confidence 4567 89999999999999999998
No 254
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.13 E-value=0.0025 Score=60.56 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+||||+|||||++.+
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l 25 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRF 25 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHH
Confidence 36899999999999999999
No 255
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.12 E-value=0.018 Score=62.52 Aligned_cols=99 Identities=11% Similarity=0.047 Sum_probs=53.2
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHHhhhhhhh-hhceeecCCCCCCccHHHHHHHH-cCCc-hhhhcccccccHHHH-H
Q 006974 346 KVECETRVVVITGPNTGGKTASMKTLGLASLMS-KAGLYLPAKNHPRLPWFDLILAD-IGDH-QSLEQNLSTFSGHIS-R 421 (623)
Q Consensus 346 ~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a-~~G~~vp~~~~~~l~~~d~i~~~-ig~~-~~~~~~~stfS~g~~-r 421 (623)
-+.+| ++++|.|+.|+|||||+-.++...... ....|+..+. ..-.+..+++.. .|.. +.+..+-..|+.++. +
T Consensus 193 Gl~~G-~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm-s~~ql~~R~~~~~~~i~~~~l~~g~~~l~~~~~~~ 270 (444)
T 3bgw_A 193 GYKRR-NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM-GKKENIKRLIVTAGSINAQKIKAARRDFASEDWGK 270 (444)
T ss_dssp SBCSS-CEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS-CTTHHHHHHHHHHSCCCHHHHHHTGGGTCCSCHHH
T ss_pred CCCCC-cEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC-CHHHHHHHHHHHHcCCCHHHHhcccCCCCHHHHHH
Confidence 36788 899999999999999998885443332 2233443332 233344455432 2322 112111111444433 5
Q ss_pred HHHHHHhcCCCcEEEEeCCCCCCCHHH
Q 006974 422 IVDILELVSRESLVLIDEIGSGTDPSE 448 (623)
Q Consensus 422 l~~~~~l~~~~~LlLLDEp~~glD~~~ 448 (623)
+..+...+.+.+++|.|+|+ +++.+
T Consensus 271 l~~a~~~l~~~~l~i~d~~~--~s~~~ 295 (444)
T 3bgw_A 271 LSMAIGEISNSNINIFDKAG--QSVNY 295 (444)
T ss_dssp HHHHHHHHHTSCEEEECCSS--CBHHH
T ss_pred HHHHHHHHhcCCEEEECCCC--CCHHH
Confidence 55554444455677777653 45544
No 256
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.09 E-value=0.038 Score=69.67 Aligned_cols=122 Identities=18% Similarity=0.233 Sum_probs=67.0
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhhhhhh-hhhceeecCCCCCCccHHHHHHHHcCCch-hhhcccccccHHHH-HHH
Q 006974 347 VECETRVVVITGPNTGGKTASMKTLGLASLM-SKAGLYLPAKNHPRLPWFDLILADIGDHQ-SLEQNLSTFSGHIS-RIV 423 (623)
Q Consensus 347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~-a~~G~~vp~~~~~~l~~~d~i~~~ig~~~-~~~~~~stfS~g~~-rl~ 423 (623)
+.+| +++.|.||.|+|||||...+...... .....|+-.+. .+... ....+|..- .+. -....+.++- ...
T Consensus 380 l~~G-~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~--s~~~~--~a~~lGvd~~~L~-I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 380 LPMG-RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH--ALDPI--YARKLGVDIDNLL-CSQPDTGEQALEIC 453 (2050)
T ss_dssp EETT-SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS--CCCHH--HHHHTTCCTTTCE-EECCSSHHHHHHHH
T ss_pred ccCC-cEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCC--CHHHH--HHHHcCCCHHHeE-EeCCCCHHHHHHHH
Confidence 6688 89999999999999999888433222 12234554443 22211 244555421 110 1112233332 222
Q ss_pred HHHHhcCCCcEEEEeCCCCCCC-HH------------HHHHHHH---HHHHHHhcCCcEEEEEcCch
Q 006974 424 DILELVSRESLVLIDEIGSGTD-PS------------EGVALAT---SILQYLRDRVGLAVVTTHYA 474 (623)
Q Consensus 424 ~~~~l~~~~~LlLLDEp~~glD-~~------------~~~~l~~---all~~l~~~~~~vii~TH~~ 474 (623)
..+....++++|++|....-.. +. ....+.. .+...+++.+++||+++|-.
T Consensus 454 ~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~ 520 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 520 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCE
T ss_pred HHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 2122246899999999987653 11 1122333 23333467789999999863
No 257
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.09 E-value=0.032 Score=52.70 Aligned_cols=19 Identities=37% Similarity=0.583 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+||.|+||||+++.+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l 58 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIAL 58 (226)
T ss_dssp CEEEECSTTSSHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4899999999999999998
No 258
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.02 E-value=0.013 Score=59.66 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 006974 352 RVVVITGPNTGGKTASMKTLG 372 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~ig 372 (623)
..++|+||.|+||||+.+.++
T Consensus 68 ~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999883
No 259
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.02 E-value=0.0035 Score=61.85 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=21.8
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 347 VECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 347 l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
+..| .+++|.||+||||||+++.+
T Consensus 23 ~~~g-~~i~i~G~~GsGKsT~~~~l 46 (229)
T 4eaq_A 23 NAMS-AFITFEGPEGSGKTTVINEV 46 (229)
T ss_dssp CCCC-EEEEEECCTTSCHHHHHHHH
T ss_pred cCCC-eEEEEEcCCCCCHHHHHHHH
Confidence 3378 89999999999999999999
No 260
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.99 E-value=0.027 Score=65.17 Aligned_cols=21 Identities=33% Similarity=0.311 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 006974 352 RVVVITGPNTGGKTASMKTLG 372 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~ig 372 (623)
.-++|+||.|+||||+.+.++
T Consensus 202 ~~vLL~G~pGtGKT~la~~la 222 (758)
T 3pxi_A 202 NNPVLIGEPGVGKTAIAEGLA 222 (758)
T ss_dssp CEEEEESCTTTTTHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHH
Confidence 467999999999999999994
No 261
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.041 Score=59.51 Aligned_cols=99 Identities=18% Similarity=0.255 Sum_probs=55.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHH-HH--HHHHHHHh
Q 006974 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGH-IS--RIVDILEL 428 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g-~~--rl~~~~~l 428 (623)
+-+++.||.|+|||++.|+++-- .|..+.. +.. ....+.+.|+ ++ +..+..+.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e-----~~~~~~~---------------v~~----s~l~sk~~Gese~~ir~~F~~A~ 271 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAAT-----IGANFIF---------------SPA----SGIVDKYIGESARIIREMFAYAK 271 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH-----HTCEEEE---------------EEG----GGTCCSSSSHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH-----hCCCEEE---------------Eeh----hhhccccchHHHHHHHHHHHHHH
Confidence 56899999999999999999321 2221110 000 1112233332 22 33333445
Q ss_pred cCCCcEEEEeCCCC--------C--CCHHHHHHHHHHHHHHHhc----CCcEEEEEcCchh
Q 006974 429 VSRESLVLIDEIGS--------G--TDPSEGVALATSILQYLRD----RVGLAVVTTHYAD 475 (623)
Q Consensus 429 ~~~~~LlLLDEp~~--------g--lD~~~~~~l~~all~~l~~----~~~~vii~TH~~~ 475 (623)
...|.+|++||.=+ + .|......+. .++..+.. .+..||.+|+..+
T Consensus 272 ~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~-~lL~~lDg~~~~~~vivI~ATNrp~ 331 (437)
T 4b4t_L 272 EHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLM-ELLTQMDGFDNLGQTKIIMATNRPD 331 (437)
T ss_dssp HSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHH-HHHHHHHSSSCTTSSEEEEEESSTT
T ss_pred hcCCceeeeecccccccccccCCCCcchHHHHHHH-HHHHHhhcccCCCCeEEEEecCCch
Confidence 67899999999832 1 2222222333 36666542 2357889999876
No 262
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.032 Score=60.12 Aligned_cols=99 Identities=22% Similarity=0.330 Sum_probs=55.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHH-HHHHHHH--HHh
Q 006974 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGH-ISRIVDI--LEL 428 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g-~~rl~~~--~~l 428 (623)
+-+++.||.|+|||++.|+++-- .|..+.. +... ...+.+.|+ ++.+..+ .+.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~-----~~~~~~~---------------v~~~----~l~~~~~Ge~e~~ir~lF~~A~ 262 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS-----TKAAFIR---------------VNGS----EFVHKYLGEGPRMVRDVFRLAR 262 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH-----HTCEEEE---------------EEGG----GTCCSSCSHHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH-----hCCCeEE---------------Eecc----hhhccccchhHHHHHHHHHHHH
Confidence 56899999999999999999321 2221110 0001 112233332 2333333 344
Q ss_pred cCCCcEEEEeCCC----------CCCCHHHHHHHHHHHHHHHhc----CCcEEEEEcCchh
Q 006974 429 VSRESLVLIDEIG----------SGTDPSEGVALATSILQYLRD----RVGLAVVTTHYAD 475 (623)
Q Consensus 429 ~~~~~LlLLDEp~----------~glD~~~~~~l~~all~~l~~----~~~~vii~TH~~~ 475 (623)
...|.++++||.- .+-|......+.. ++..+.. .+..||++|++.+
T Consensus 263 ~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~-lL~~ldg~~~~~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 263 ENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIE-LLTQMDGFDQSTNVKVIMATNRAD 322 (428)
T ss_dssp HTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHH-HHHHHHHSCSSCSEEEEEEESCSS
T ss_pred HcCCCeeechhhhhhhccccCCCCCCChHHHHHHHH-HHHHhhCCCCCCCEEEEEecCChh
Confidence 5789999999982 2233333333443 5555542 2457888999876
No 263
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.93 E-value=0.014 Score=52.89 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.-+.|+||.|+|||++.+.+
T Consensus 25 ~~vll~G~~GtGKt~lA~~i 44 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYL 44 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHH
Confidence 45799999999999999999
No 264
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.91 E-value=0.02 Score=51.64 Aligned_cols=88 Identities=9% Similarity=0.123 Sum_probs=49.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCC
Q 006974 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSR 431 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~ 431 (623)
.-+.|+||.|+|||++.+.++-.. +.++.-.. ..++ + .. ..-....+ +
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~-----~~~~~~~~-~~~~--~----~~-------------------~~~~~~~a-~ 75 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNG-----TPWVSPAR-VEYL--I----DM-------------------PMELLQKA-E 75 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTT-----SCEECCSS-TTHH--H----HC-------------------HHHHHHHT-T
T ss_pred CcEEEECCCCccHHHHHHHHHHhC-----CCeEEech-hhCC--h----Hh-------------------hhhHHHhC-C
Confidence 457899999999999999992211 11111111 1111 0 00 01112222 3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (623)
Q Consensus 432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~ 473 (623)
..+|+|||+.. +++.....|.. +++.....+..+|++|+.
T Consensus 76 ~~~l~lDei~~-l~~~~q~~Ll~-~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 76 GGVLYVGDIAQ-YSRNIQTGITF-IIGKAERCRVRVIASCSY 115 (143)
T ss_dssp TSEEEEEECTT-CCHHHHHHHHH-HHHHHTTTTCEEEEEEEE
T ss_pred CCeEEEeChHH-CCHHHHHHHHH-HHHhCCCCCEEEEEecCC
Confidence 57999999874 56666666766 444333335667777764
No 265
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.86 E-value=0.0033 Score=60.13 Aligned_cols=20 Identities=20% Similarity=0.410 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+|++||||||+.+.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L 38 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAI 38 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999999
No 266
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.86 E-value=0.0033 Score=66.72 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=37.6
Q ss_pred CcEEEceeeeecCCccc-----------------cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 325 SEMTVGSLSKGISDFPV-----------------PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v-----------------~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
+.+.++||++.|..... ++.+.+.+| +.++|+||+|+|||||++.|
T Consensus 132 ~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rG-Qr~~IvG~sG~GKTtLl~~I 194 (422)
T 3ice_A 132 NKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRG-QRGLIVAPPKAGKTMLLQNI 194 (422)
T ss_dssp TSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTT-CEEEEECCSSSSHHHHHHHH
T ss_pred CCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCC-cEEEEecCCCCChhHHHHHH
Confidence 45678888888864321 466788899 89999999999999999998
No 267
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.69 E-value=0.05 Score=56.22 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 006974 352 RVVVITGPNTGGKTASMKTLG 372 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~ig 372 (623)
+.++|.||.|+|||++.+.++
T Consensus 46 ~~iLL~GppGtGKT~la~ala 66 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVA 66 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHH
Confidence 578999999999999999993
No 268
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.67 E-value=0.0053 Score=57.52 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHH
Q 006974 349 CETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 349 ~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
.| .+++|+|++||||||+.+.+
T Consensus 3 ~g-~~I~l~G~~GsGKST~~~~L 24 (186)
T 3cm0_A 3 VG-QAVIFLGPPGAGKGTQASRL 24 (186)
T ss_dssp CE-EEEEEECCTTSCHHHHHHHH
T ss_pred CC-eEEEEECCCCCCHHHHHHHH
Confidence 45 78999999999999999998
No 269
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.64 E-value=0.0059 Score=58.89 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=23.4
Q ss_pred ccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 345 IKVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 345 l~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
+.+.+| .+++|+|++||||||+.+.+
T Consensus 20 ~~~~~~-~~i~~~G~~GsGKsT~~~~l 45 (211)
T 1m7g_A 20 LRNQRG-LTIWLTGLSASGKSTLAVEL 45 (211)
T ss_dssp HHTSSC-EEEEEECSTTSSHHHHHHHH
T ss_pred ccCCCC-CEEEEECCCCCCHHHHHHHH
Confidence 456678 89999999999999999999
No 270
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.64 E-value=0.0043 Score=65.21 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+|++|+|||||++.+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L 94 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYF 94 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 79999999999999999999
No 271
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.62 E-value=0.0068 Score=57.06 Aligned_cols=23 Identities=39% Similarity=0.351 Sum_probs=21.2
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHH
Q 006974 348 ECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 348 ~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
.+| .+++|+|++||||||+.+.+
T Consensus 11 ~~~-~~i~l~G~~GsGKsT~~~~L 33 (186)
T 2yvu_A 11 EKG-IVVWLTGLPGSGKTTIATRL 33 (186)
T ss_dssp SCC-EEEEEECCTTSSHHHHHHHH
T ss_pred CCC-cEEEEEcCCCCCHHHHHHHH
Confidence 457 89999999999999999999
No 272
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.56 E-value=0.027 Score=58.02 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
..++|+||.|+||||+.+.+
T Consensus 56 ~~vll~G~~GtGKT~la~~i 75 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANII 75 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHH
Confidence 45899999999999999999
No 273
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.56 E-value=0.0068 Score=70.78 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=23.3
Q ss_pred cccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 344 DIKVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 344 ~l~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
++.+.++ ..++|+||||+||||+.|++
T Consensus 505 ~~~~~~~-~~vLL~GppGtGKT~Lakal 531 (806)
T 1ypw_A 505 KFGMTPS-KGVLFYGPPGCGKTLLAKAI 531 (806)
T ss_dssp CCCCCCC-CCCCCBCCTTSSHHHHHHHH
T ss_pred hcCCCCC-ceeEEECCCCCCHHHHHHHH
Confidence 4455667 77899999999999999999
No 274
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.47 E-value=0.019 Score=60.52 Aligned_cols=87 Identities=23% Similarity=0.151 Sum_probs=45.4
Q ss_pred eEEEE--EcCCCCCHHHHHHHHhh-hhhh------hhhceeecCCCC-CCccHHHHHHHHcCCchhhhcccccccHHH--
Q 006974 352 RVVVI--TGPNTGGKTASMKTLGL-ASLM------SKAGLYLPAKNH-PRLPWFDLILADIGDHQSLEQNLSTFSGHI-- 419 (623)
Q Consensus 352 ~~~~I--~GpNgsGKSTlLk~igl-~~~~------a~~G~~vp~~~~-~~l~~~d~i~~~ig~~~~~~~~~stfS~g~-- 419 (623)
..++| +||.|+||||+++.+.- +.-. .....++.+... ....++..++..+|.... ....+...
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~ 126 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQ----VRGAPALDIL 126 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCC----CTTCCHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCC----CCCCCHHHHH
Confidence 67888 99999999999999832 1110 001234443221 122345566666654311 11112221
Q ss_pred HHHHHHHHhcCCCcEEEEeCCCC
Q 006974 420 SRIVDILELVSRESLVLIDEIGS 442 (623)
Q Consensus 420 ~rl~~~~~l~~~~~LlLLDEp~~ 442 (623)
..+...+.....|-+|+|||.=.
T Consensus 127 ~~l~~~l~~~~~~~llvlDe~~~ 149 (412)
T 1w5s_A 127 KALVDNLYVENHYLLVILDEFQS 149 (412)
T ss_dssp HHHHHHHHHHTCEEEEEEESTHH
T ss_pred HHHHHHHHhcCCeEEEEEeCHHH
Confidence 12333333335678999999743
No 275
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.47 E-value=0.016 Score=63.62 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.-+.|+||.|+|||++.+.+
T Consensus 239 ~~vLL~GppGtGKT~lArai 258 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAV 258 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHHH
Confidence 56899999999999999999
No 276
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.45 E-value=0.007 Score=55.62 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+||.||||||+.+.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L 21 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKL 21 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999998
No 277
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.45 E-value=0.05 Score=58.08 Aligned_cols=99 Identities=17% Similarity=0.261 Sum_probs=55.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHH-HHHHHHH--HHh
Q 006974 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGH-ISRIVDI--LEL 428 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g-~~rl~~~--~~l 428 (623)
+-+.+.||.|+|||++.|+++-- .|..+.. +... ...+.+.|+ ++.+..+ .+.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e-----~~~~f~~---------------v~~s----~l~sk~vGese~~vr~lF~~Ar 238 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHH-----TDCKFIR---------------VSGA----ELVQKYIGEGSRMVRELFVMAR 238 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHH-----HTCEEEE---------------EEGG----GGSCSSTTHHHHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHh-----hCCCceE---------------EEhH----HhhccccchHHHHHHHHHHHHH
Confidence 45799999999999999999221 2221110 0001 112233332 3333333 344
Q ss_pred cCCCcEEEEeCCCCCC----------CHHHHHHHHHHHHHHHhc----CCcEEEEEcCchh
Q 006974 429 VSRESLVLIDEIGSGT----------DPSEGVALATSILQYLRD----RVGLAVVTTHYAD 475 (623)
Q Consensus 429 ~~~~~LlLLDEp~~gl----------D~~~~~~l~~all~~l~~----~~~~vii~TH~~~ 475 (623)
...|.+|++||.=+-. |......+. .++..+.. .+..||.+|+..+
T Consensus 239 ~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~-~lL~~lDg~~~~~~V~vIaATNrpd 298 (405)
T 4b4t_J 239 EHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTML-ELLNQLDGFETSKNIKIIMATNRLD 298 (405)
T ss_dssp HTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHH-HHHHHHHTTTCCCCEEEEEEESCSS
T ss_pred HhCCceEeeecchhhccCCCCCCCCCcHHHHHHHH-HHHHhhhccCCCCCeEEEeccCChh
Confidence 5789999999974321 222223333 36665542 2447888999876
No 278
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.39 E-value=0.039 Score=59.58 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
+-+.+.||.|+|||++.|++
T Consensus 216 rGvLLyGPPGTGKTllAkAi 235 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARAC 235 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHH
Confidence 56899999999999999999
No 279
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.36 E-value=0.0032 Score=66.46 Aligned_cols=40 Identities=15% Similarity=0.308 Sum_probs=27.6
Q ss_pred CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
+.+.+.+++..|+.+.+ +++|. ++|+|+||+|||||++++
T Consensus 16 ~~v~~~~l~~~~~~k~~~~~~~~~-------I~vvG~~g~GKSTLln~L 57 (361)
T 2qag_A 16 GYVGFANLPNQVHRKSVKKGFEFT-------LMVVGESGLGKSTLINSL 57 (361)
T ss_dssp -----CCHHHHHHTHHHHHCCEEC-------EEECCCTTSCHHHHHHHH
T ss_pred ceEEeccchHHhCCeeecCCCCEE-------EEEEcCCCCCHHHHHHHH
Confidence 34667788888876655 44332 489999999999999997
No 280
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.26 E-value=0.051 Score=58.97 Aligned_cols=99 Identities=12% Similarity=0.198 Sum_probs=54.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHH-HHHH--HHHHHh
Q 006974 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGH-ISRI--VDILEL 428 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g-~~rl--~~~~~l 428 (623)
+-++|.||.|+|||++.|+++-- .|..+.. +.. ..-.+.+.|+ ++.+ .+..+.
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~e-----~~~~fi~---------------vs~----s~L~sk~vGesek~ir~lF~~Ar 299 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVANR-----TDATFIR---------------VIG----SELVQKYVGEGARMVRELFEMAR 299 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHHH-----HTCEEEE---------------EEG----GGGCCCSSSHHHHHHHHHHHHHH
T ss_pred CceEeeCCCCCcHHHHHHHHHhc-----cCCCeEE---------------EEh----HHhhcccCCHHHHHHHHHHHHHH
Confidence 56899999999999999999221 2221110 000 0112233332 3333 333445
Q ss_pred cCCCcEEEEeCCCCCC----------CHHHHHHHHHHHHHHHhc----CCcEEEEEcCchh
Q 006974 429 VSRESLVLIDEIGSGT----------DPSEGVALATSILQYLRD----RVGLAVVTTHYAD 475 (623)
Q Consensus 429 ~~~~~LlLLDEp~~gl----------D~~~~~~l~~all~~l~~----~~~~vii~TH~~~ 475 (623)
...|.+|++||.-+-. +......+.. ++..+.. .+..||.+|+..+
T Consensus 300 ~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~-lL~~lDg~~~~~~ViVIaATNrpd 359 (467)
T 4b4t_H 300 TKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLE-LITQLDGFDPRGNIKVMFATNRPN 359 (467)
T ss_dssp HTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHH-HHHHHHSSCCTTTEEEEEECSCTT
T ss_pred hcCCceEeecccccccccccCcCCCccHHHHHHHHH-HHHHhhccCCCCcEEEEeCCCCcc
Confidence 6789999999985332 2222223333 5555532 2346788998865
No 281
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.26 E-value=0.0094 Score=58.58 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.8
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHH
Q 006974 348 ECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 348 ~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
.++ .+++|+|+|||||||+.+.+
T Consensus 14 ~~~-~~i~i~G~~gsGKst~~~~l 36 (236)
T 1q3t_A 14 MKT-IQIAIDGPASSGKSTVAKII 36 (236)
T ss_dssp CCC-CEEEEECSSCSSHHHHHHHH
T ss_pred cCC-cEEEEECCCCCCHHHHHHHH
Confidence 345 78999999999999999998
No 282
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.25 E-value=0.0091 Score=54.64 Aligned_cols=20 Identities=40% Similarity=0.564 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+||.||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999988
No 283
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.23 E-value=0.0092 Score=56.38 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+||+|||||||++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l 26 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKL 26 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHH
Confidence 58999999999999999998
No 284
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.18 E-value=0.011 Score=57.13 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+|++||||||+.+.+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L 24 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAF 24 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999999
No 285
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.16 E-value=0.01 Score=54.47 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
..++|+|+||+|||||++.+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l 23 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNAL 23 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 286
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.16 E-value=0.0083 Score=57.37 Aligned_cols=20 Identities=45% Similarity=0.795 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
+.++|+||+|+||||+++.+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L 21 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKL 21 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 45899999999999999988
No 287
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.12 E-value=0.061 Score=56.36 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.-++|+||.|+||||+.+.+
T Consensus 85 ~~iLL~GppGtGKT~la~al 104 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAV 104 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHH
Confidence 45789999999999999999
No 288
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.06 E-value=0.067 Score=57.54 Aligned_cols=99 Identities=18% Similarity=0.196 Sum_probs=55.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhhhhhhhhcee-ecCCCCCCccHHHHHHHHcCCchhhhcccccccHH-HHHH--HHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLY-LPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGH-ISRI--VDILE 427 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~-vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g-~~rl--~~~~~ 427 (623)
+-+.+.||.|+|||.+.|+++-- .|.. +.-.+ . .-.+.+.|+ ++.+ .+..+
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e-----~~~~fi~v~~----------------s----~l~sk~vGesek~ir~lF~~A 271 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQ-----TSATFLRIVG----------------S----ELIQKYLGDGPRLCRQIFKVA 271 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHH-----HTCEEEEEES----------------G----GGCCSSSSHHHHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHHH-----hCCCEEEEEH----------------H----HhhhccCchHHHHHHHHHHHH
Confidence 56899999999999999999221 2221 11111 1 112222232 3333 33344
Q ss_pred hcCCCcEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhc----CCcEEEEEcCchhH
Q 006974 428 LVSRESLVLIDEIGS----------GTDPSEGVALATSILQYLRD----RVGLAVVTTHYADL 476 (623)
Q Consensus 428 l~~~~~LlLLDEp~~----------glD~~~~~~l~~all~~l~~----~~~~vii~TH~~~l 476 (623)
....|.+|++||.-+ +-+......+.. ++..+.. .+..||.+|++.+.
T Consensus 272 r~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~-LL~~lDg~~~~~~ViVIaATNrpd~ 333 (437)
T 4b4t_I 272 GENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLE-LLNQLDGFDDRGDVKVIMATNKIET 333 (437)
T ss_dssp HHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHH-HHHHHHHCCCSSSEEEEEEESCSTT
T ss_pred HhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHH-HHHHhhCcCCCCCEEEEEeCCChhh
Confidence 557899999999732 122223333333 5555432 24578889998763
No 289
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.05 E-value=0.011 Score=59.00 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+|||||||||+-+.+
T Consensus 2 ~li~I~G~~GSGKSTla~~L 21 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQI 21 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHH
Confidence 47899999999999999998
No 290
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.04 E-value=0.013 Score=55.05 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHH
Q 006974 349 CETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 349 ~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
.+ .+++|+|+.||||||+.+.+
T Consensus 4 ~~-~~I~l~G~~GsGKST~~~~L 25 (193)
T 2rhm_A 4 TP-ALIIVTGHPATGKTTLSQAL 25 (193)
T ss_dssp CC-EEEEEEESTTSSHHHHHHHH
T ss_pred CC-eEEEEECCCCCCHHHHHHHH
Confidence 45 78999999999999999998
No 291
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.04 E-value=0.028 Score=62.07 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 006974 352 RVVVITGPNTGGKTASMKTLG 372 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~ig 372 (623)
..++|+||.|+||||+++.++
T Consensus 78 ~~lLL~GppGtGKTtla~~la 98 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVA 98 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 688999999999999999993
No 292
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.02 E-value=0.046 Score=55.76 Aligned_cols=21 Identities=24% Similarity=0.388 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 006974 352 RVVVITGPNTGGKTASMKTLG 372 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~ig 372 (623)
..++|+||.|+||||+++.++
T Consensus 39 ~~vll~G~~GtGKT~la~~i~ 59 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIA 59 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 568999999999999999993
No 293
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.01 E-value=0.066 Score=55.59 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
..++|+||.|+||||+++.+
T Consensus 39 ~~~ll~G~~G~GKT~la~~l 58 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLL 58 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 294
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.00 E-value=0.013 Score=54.44 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
..++|+|++|+|||||++.+
T Consensus 5 ~ki~ivG~~g~GKStLl~~l 24 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNAL 24 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 67999999999999999999
No 295
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.00 E-value=0.051 Score=54.29 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 006974 352 RVVVITGPNTGGKTASMKTLG 372 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~ig 372 (623)
..+.|+||.|+||||+.+.++
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia 85 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIA 85 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 678999999999999999994
No 296
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.96 E-value=0.013 Score=54.45 Aligned_cols=20 Identities=25% Similarity=0.692 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+|+.||||||+.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~L 23 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCL 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999999
No 297
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.94 E-value=0.083 Score=54.02 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=27.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (623)
Q Consensus 430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~ 475 (623)
.++.+|++||.-.-........|.. +++... .+..+|++|++..
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~-~le~~~-~~~~iI~~~n~~~ 147 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRS-FMEAYS-SNCSIIITANNID 147 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHH-HHHHHG-GGCEEEEEESSGG
T ss_pred CCCeEEEEECCcccCcHHHHHHHHH-HHHhCC-CCcEEEEEeCCcc
Confidence 3789999999965442444444544 344332 2457778887754
No 298
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.93 E-value=0.078 Score=54.55 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
..+.|.||.|+|||++.+.+
T Consensus 52 ~~vLl~GppGtGKT~la~ai 71 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAV 71 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHH
Confidence 56899999999999999999
No 299
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.92 E-value=0.011 Score=60.62 Aligned_cols=64 Identities=9% Similarity=0.107 Sum_probs=39.9
Q ss_pred ccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHH-HHHHHHHHHHHHhcC-Cc--EEEEEcCchh-HHhhcccc
Q 006974 415 FSGHISRIVDILELVSRESLVLIDEIGSGTDPSE-GVALATSILQYLRDR-VG--LAVVTTHYAD-LSCLKDKD 483 (623)
Q Consensus 415 fS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~-~~~l~~all~~l~~~-~~--~vii~TH~~~-l~~~~~~~ 483 (623)
++.+.+.+...+.....|.++++ |.+|... ...+.. .++.+.+. +. .+.+++|+.+ +..+.+..
T Consensus 101 ~~~~~~~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~-~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDEMVLNKLREGKAPVILAV----NKVDNVQEKADLLP-HLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp CCHHHHHHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHH-HHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEE----ECcccCccHHHHHH-HHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 88887765555544578888888 7888876 555555 44445543 43 4556777754 65555443
No 300
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.90 E-value=0.014 Score=54.04 Aligned_cols=20 Identities=15% Similarity=0.399 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+||+||||||+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L 22 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREF 22 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHH
Confidence 57899999999999999998
No 301
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.90 E-value=0.03 Score=53.59 Aligned_cols=120 Identities=15% Similarity=0.226 Sum_probs=61.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhhhhhhh-h-hceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHH
Q 006974 349 CETRVVVITGPNTGGKTASMKTLGLASLMS-K-AGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDIL 426 (623)
Q Consensus 349 ~g~~~~~I~GpNgsGKSTlLk~igl~~~~a-~-~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~ 426 (623)
+| .+.+++||-|+||||.+-.+..-..-+ + ...+.|... .+.+ ...+.+++|..-. ...++... .+.
T Consensus 7 ~g-~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d-~r~~-~~~i~s~~g~~~~-a~~~~~~~-------~i~ 75 (191)
T 1xx6_A 7 HG-WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEID-NRYS-KEDVVSHMGEKEQ-AVAIKNSR-------EIL 75 (191)
T ss_dssp CC-EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC---------CEEECTTSCEEE-CEEESSST-------HHH
T ss_pred CC-EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC-ccch-HHHHHhhcCCcee-eEeeCCHH-------HHH
Confidence 46 899999999999998876552222111 1 122334332 1111 1123333443211 01122221 223
Q ss_pred HhcC-CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCch-----------hHHhhccccce
Q 006974 427 ELVS-RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA-----------DLSCLKDKDTR 485 (623)
Q Consensus 427 ~l~~-~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~-----------~l~~~~~~~~~ 485 (623)
..+. +.++|++||.-. +|+..-. .++.+...+..||++.++. +|..+||.+..
T Consensus 76 ~~~~~~~dvViIDEaqf-l~~~~v~-----~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~e 140 (191)
T 1xx6_A 76 KYFEEDTEVIAIDEVQF-FDDEIVE-----IVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDK 140 (191)
T ss_dssp HHCCTTCSEEEECSGGG-SCTHHHH-----HHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEE
T ss_pred HHHhccCCEEEEECCCC-CCHHHHH-----HHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEe
Confidence 3333 479999999654 6655422 3444555588999998854 24456666544
No 302
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.81 E-value=0.12 Score=54.72 Aligned_cols=20 Identities=35% Similarity=0.544 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
..++|+||.|+|||++.+.+
T Consensus 149 ~~vLL~GppGtGKT~la~ai 168 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAV 168 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 57899999999999999999
No 303
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.81 E-value=0.014 Score=54.20 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|++|+|||||++.+
T Consensus 8 ~~i~lvG~~gvGKStL~~~l 27 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNAL 27 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 304
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.80 E-value=0.015 Score=54.41 Aligned_cols=20 Identities=40% Similarity=0.461 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+||.||||||+.+.+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L 23 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLA 23 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999998
No 305
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.78 E-value=0.039 Score=56.60 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 006974 352 RVVVITGPNTGGKTASMKTLG 372 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~ig 372 (623)
..+.|+||.|+|||++.+.+.
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~ 46 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALH 46 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHH
T ss_pred CcEEEECCCCchHHHHHHHHH
Confidence 467899999999999999993
No 306
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.76 E-value=0.019 Score=59.98 Aligned_cols=20 Identities=25% Similarity=0.159 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
..+.|+||.|+||||+++.+
T Consensus 46 ~~vll~G~~G~GKT~la~~l 65 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYI 65 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHH
Confidence 68999999999999999999
No 307
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.76 E-value=0.034 Score=55.30 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 006974 352 RVVVITGPNTGGKTASMKTLG 372 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~ig 372 (623)
..+.|+||.|+|||++.+.++
T Consensus 30 ~~vll~G~~GtGKt~la~~i~ 50 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLH 50 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHHHH
Confidence 467899999999999999994
No 308
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.75 E-value=0.088 Score=57.07 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
..++|.||.|+||||+.+.+
T Consensus 51 ~~vLL~GppGtGKTtlAr~i 70 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVI 70 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHH
Confidence 35899999999999999999
No 309
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.75 E-value=0.012 Score=54.64 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+||+||||||+.+.+
T Consensus 6 ~i~i~G~~GsGKsTla~~L 24 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARAL 24 (175)
T ss_dssp CEEEECCTTSCHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 5889999999999999999
No 310
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.72 E-value=0.012 Score=58.72 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=21.8
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 346 KVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 346 ~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
....+ .+++|+||+||||||+.+.+
T Consensus 28 ~~~~~-~~i~l~G~~GsGKSTla~~L 52 (253)
T 2p5t_B 28 SSKQP-IAILLGGQSGAGKTTIHRIK 52 (253)
T ss_dssp CCSSC-EEEEEESCGGGTTHHHHHHH
T ss_pred cccCC-eEEEEECCCCCCHHHHHHHH
Confidence 34456 79999999999999999998
No 311
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.65 E-value=0.016 Score=54.11 Aligned_cols=22 Identities=32% Similarity=0.283 Sum_probs=20.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHH
Q 006974 349 CETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 349 ~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
.+ .+++|+|+.||||||+.+.+
T Consensus 10 ~~-~~i~i~G~~GsGKst~~~~l 31 (180)
T 3iij_A 10 LL-PNILLTGTPGVGKTTLGKEL 31 (180)
T ss_dssp CC-CCEEEECSTTSSHHHHHHHH
T ss_pred cC-CeEEEEeCCCCCHHHHHHHH
Confidence 45 68899999999999999998
No 312
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.61 E-value=0.017 Score=58.96 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=20.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHH
Q 006974 349 CETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 349 ~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
.+ .+++|+||+||||||+.+.+
T Consensus 32 ~~-~livl~G~sGsGKSTla~~L 53 (287)
T 1gvn_B 32 SP-TAFLLGGQPGSGKTSLRSAI 53 (287)
T ss_dssp SC-EEEEEECCTTSCTHHHHHHH
T ss_pred CC-eEEEEECCCCCCHHHHHHHH
Confidence 45 79999999999999999998
No 313
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.54 E-value=0.018 Score=54.47 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
+++|+|+.||||||+.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L 20 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEI 20 (205)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHH
Confidence 5899999999999999999
No 314
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=94.54 E-value=0.18 Score=55.90 Aligned_cols=117 Identities=16% Similarity=0.171 Sum_probs=64.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhh---hhhhh--hhceeecCCCCC---CccHHHHHHHHcCCchhhhcccccccH-HHHH
Q 006974 351 TRVVVITGPNTGGKTASMKTLGL---ASLMS--KAGLYLPAKNHP---RLPWFDLILADIGDHQSLEQNLSTFSG-HISR 421 (623)
Q Consensus 351 ~~~~~I~GpNgsGKSTlLk~igl---~~~~a--~~G~~vp~~~~~---~l~~~d~i~~~ig~~~~~~~~~stfS~-g~~r 421 (623)
..+++|+|+-|.|||||.+.+.- ..+.. ....++...... .......++..++...... .+..... ....
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~-~~~~~~~~~~~~ 230 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLL-NFPSVEHVTSVV 230 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCT-TCCCCTTCCHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccc-cccccccccHHH
Confidence 37999999999999999998852 11211 223456544321 1233456666666542110 1112111 1122
Q ss_pred -HHHHHH-hcCC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhh
Q 006974 422 -IVDILE-LVSR-ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL 479 (623)
Q Consensus 422 -l~~~~~-l~~~-~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~ 479 (623)
...+.. +..+ +-||+||-.-. . + .+. +. ...|+.||+||.+..+...
T Consensus 231 l~~~l~~~L~~~kr~LlVLDdv~~---~-~--~~~--~~---~~~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 231 LKRMICNALIDRPNTLFVFDDVVQ---E-E--TIR--WA---QELRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHHHHHHHHTTSTTEEEEEEEECC---H-H--HHH--HH---HHTTCEEEEEESBGGGGGG
T ss_pred HHHHHHHHHcCCCcEEEEEECCCC---c-h--hhc--cc---ccCCCEEEEEcCCHHHHHH
Confidence 223333 4564 78999997654 1 1 111 11 1158899999998766544
No 315
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.48 E-value=0.076 Score=51.77 Aligned_cols=122 Identities=19% Similarity=0.219 Sum_probs=60.4
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhh--ceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHH
Q 006974 348 ECETRVVVITGPNTGGKTASMKTLGLASLMSKA--GLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDI 425 (623)
Q Consensus 348 ~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~--G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~ 425 (623)
.+| .+.+++||=|+||||.+-.+..-..-+.. -.+.|... .+.+ -..+.+++|..-.. ..++... .+
T Consensus 26 ~~G-~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d-~R~g-e~~i~s~~g~~~~a-~~~~~~~-------~~ 94 (214)
T 2j9r_A 26 QNG-WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID-NRYS-EEDVVSHNGLKVKA-VPVSASK-------DI 94 (214)
T ss_dssp CSC-EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-------------------CCE-EECSSGG-------GG
T ss_pred CCC-EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC-Ccch-HHHHHhhcCCeeEE-eecCCHH-------HH
Confidence 457 89999999999999987666332222211 22334432 2222 23456666543111 1112211 12
Q ss_pred HHhcC-CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-----------HHhhcccccee
Q 006974 426 LELVS-RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-----------LSCLKDKDTRF 486 (623)
Q Consensus 426 ~~l~~-~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-----------l~~~~~~~~~i 486 (623)
...+. +.++|++||.-- +|+... + +++.+...+..||++-++.+ |..+||.+..+
T Consensus 95 ~~~~~~~~dvViIDEaQF-~~~~~V----~-~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel 161 (214)
T 2j9r_A 95 FKHITEEMDVIAIDEVQF-FDGDIV----E-VVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKL 161 (214)
T ss_dssp GGGCCSSCCEEEECCGGG-SCTTHH----H-HHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEEC
T ss_pred HHHHhcCCCEEEEECccc-CCHHHH----H-HHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEee
Confidence 22333 478999999866 555433 2 34445555889999999432 44566665543
No 316
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.48 E-value=0.069 Score=57.77 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 006974 352 RVVVITGPNTGGKTASMKTLG 372 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~ig 372 (623)
..++|.||.|+|||++.+.++
T Consensus 168 ~~vLL~GppGtGKT~lA~aia 188 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVA 188 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999993
No 317
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.47 E-value=0.021 Score=54.04 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+|+.||||||+.+.+
T Consensus 9 ~~I~i~G~~GsGKST~~~~L 28 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALL 28 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999999
No 318
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.40 E-value=0.02 Score=53.43 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+|++|+|||||++.+
T Consensus 4 kv~ivG~~gvGKStLl~~l 22 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQL 22 (184)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999999
No 319
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.32 E-value=0.037 Score=56.28 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+||.|+||||+.+.+
T Consensus 48 ~~ll~G~~G~GKT~la~~l 66 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALAL 66 (327)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHH
Confidence 4899999999999999999
No 320
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.31 E-value=0.024 Score=53.76 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=20.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHH
Q 006974 349 CETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 349 ~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
+| .+++|+|+.||||||+.+.+
T Consensus 3 ~~-~~I~l~G~~GsGKsT~~~~L 24 (204)
T 2v54_A 3 RG-ALIVFEGLDKSGKTTQCMNI 24 (204)
T ss_dssp CC-CEEEEECCTTSSHHHHHHHH
T ss_pred CC-cEEEEEcCCCCCHHHHHHHH
Confidence 46 78999999999999999999
No 321
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.24 E-value=0.011 Score=56.62 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
+++|+|++||||||+++.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L 20 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKL 20 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 6899999999999999998
No 322
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.20 E-value=0.023 Score=56.27 Aligned_cols=20 Identities=35% Similarity=0.586 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-+++|+||+||||||+.+.+
T Consensus 10 ~~i~i~G~~GsGKsTla~~l 29 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGL 29 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999999
No 323
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.18 E-value=0.026 Score=52.74 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+|+.||||||+.+.+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L 23 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARI 23 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999988
No 324
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.16 E-value=0.025 Score=53.13 Aligned_cols=23 Identities=13% Similarity=0.351 Sum_probs=20.7
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHH
Q 006974 348 ECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 348 ~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
.++ .+++|+|+.||||||+.+.+
T Consensus 7 ~~~-~~I~l~G~~GsGKsT~~~~L 29 (196)
T 2c95_A 7 KKT-NIIFVVGGPGSGKGTQCEKI 29 (196)
T ss_dssp TTS-CEEEEEECTTSSHHHHHHHH
T ss_pred cCC-CEEEEECCCCCCHHHHHHHH
Confidence 345 79999999999999999998
No 325
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.13 E-value=0.025 Score=53.72 Aligned_cols=19 Identities=32% Similarity=0.730 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
+++|+|++||||||+.+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~l 22 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRV 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 326
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.11 E-value=0.26 Score=47.26 Aligned_cols=63 Identities=16% Similarity=0.092 Sum_probs=38.6
Q ss_pred HHHHHHhc--CCCcEEEEeCCCCC--CCHHHHHHHHHHHHHHHhcC--CcEEEEEcCch--hHHhhccccceeeC
Q 006974 422 IVDILELV--SRESLVLIDEIGSG--TDPSEGVALATSILQYLRDR--VGLAVVTTHYA--DLSCLKDKDTRFEN 488 (623)
Q Consensus 422 l~~~~~l~--~~~~LlLLDEp~~g--lD~~~~~~l~~all~~l~~~--~~~vii~TH~~--~l~~~~~~~~~i~~ 488 (623)
+..+...+ .+.+||||||++.. ++..+...+. +.+.++ ...+|+|+++. ++..+||.+..+..
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~----~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~ 179 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVI----SALNARPGHQTVIITGRGCHRDILDLADTVSELRP 179 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHH----HHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHH----HHHHhCcCCCEEEEECCCCcHHHHHhCcceeeecc
Confidence 44455555 56799999999752 2222222333 334433 45789999984 37788887665543
No 327
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.08 E-value=0.029 Score=53.28 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=20.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHH
Q 006974 349 CETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 349 ~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
+| .+++|+|+.||||||+.+.+
T Consensus 3 ~~-~~I~i~G~~GsGKsT~~~~L 24 (213)
T 2plr_A 3 KG-VLIAFEGIDGSGKSSQATLL 24 (213)
T ss_dssp CC-EEEEEECCTTSSHHHHHHHH
T ss_pred CC-eEEEEEcCCCCCHHHHHHHH
Confidence 35 68999999999999999999
No 328
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.05 E-value=0.026 Score=53.02 Aligned_cols=19 Identities=21% Similarity=0.499 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
+++|+|+.||||||+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L 20 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLL 20 (197)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999998
No 329
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=94.03 E-value=0.024 Score=63.11 Aligned_cols=29 Identities=17% Similarity=0.383 Sum_probs=22.9
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
++.+.+... .-++|.|..||||||+|+++
T Consensus 206 pv~~DL~k~-pHlLIaG~TGSGKS~~L~tl 234 (574)
T 2iut_A 206 PIITDLAKM-PHLLVAGTTGSGKSVGVNAM 234 (574)
T ss_dssp EEEEEGGGS-CCEEEECCTTSSHHHHHHHH
T ss_pred EEEEEhhhC-CeeEEECCCCCCHHHHHHHH
Confidence 344445555 56899999999999999998
No 330
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.03 E-value=0.055 Score=57.69 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.1
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 347 VECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 347 l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
+..+ ..++|+|+||+|||||++.+
T Consensus 19 i~~~-~kvgIVG~pnvGKSTL~n~L 42 (396)
T 2ohf_A 19 FGTS-LKIGIVGLPNVGKSTFFNVL 42 (396)
T ss_dssp SSSC-CCEEEECCSSSSHHHHHHHH
T ss_pred ccCC-CEEEEECCCCCCHHHHHHHH
Confidence 4456 67899999999999999999
No 331
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.03 E-value=0.017 Score=60.65 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=24.7
Q ss_pred cccccccCCceE--EEEEcCCCCCHHHHHHHH
Q 006974 342 PIDIKVECETRV--VVITGPNTGGKTASMKTL 371 (623)
Q Consensus 342 ~i~l~l~~g~~~--~~I~GpNgsGKSTlLk~i 371 (623)
.+++.+.+| ++ ++|+||+|+||||+.+++
T Consensus 14 ~l~~~i~~g-~~~~i~l~G~~G~GKTTl~~~l 44 (359)
T 2ga8_A 14 LLDNRIEDN-YRVCVILVGSPGSGKSTIAEEL 44 (359)
T ss_dssp HHHHTTTTC-SCEEEEEECCTTSSHHHHHHHH
T ss_pred HHHHHhccC-CeeEEEEECCCCCcHHHHHHHH
Confidence 566677777 55 999999999999999999
No 332
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.99 E-value=0.028 Score=52.49 Aligned_cols=20 Identities=20% Similarity=0.420 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+|+.||||||+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L 21 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKV 21 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999998
No 333
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=93.92 E-value=0.024 Score=59.49 Aligned_cols=26 Identities=12% Similarity=0.373 Sum_probs=20.6
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
++++.++ .++|+|++|+||||||+.+
T Consensus 29 ~i~~~lp----~I~vvG~~~sGKSSLln~l 54 (360)
T 3t34_A 29 TLWDSLP----AIAVVGGQSSGKSSVLESI 54 (360)
T ss_dssp ---CCCC----EEEEECBTTSSHHHHHHHH
T ss_pred cccccCC----EEEEECCCCCcHHHHHHHH
Confidence 4556654 7899999999999999999
No 334
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.91 E-value=0.029 Score=52.67 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+|++||||||++..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L 24 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKW 24 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999887
No 335
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.89 E-value=0.085 Score=56.96 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 006974 352 RVVVITGPNTGGKTASMKTLG 372 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~ig 372 (623)
.+++|+|++|+||||+...++
T Consensus 100 ~vI~ivG~~GvGKTTla~~La 120 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLA 120 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999984
No 336
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.80 E-value=0.024 Score=52.67 Aligned_cols=20 Identities=40% Similarity=0.556 Sum_probs=15.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+|+.||||||+.+.+
T Consensus 6 ~~I~l~G~~GsGKST~a~~L 25 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTL 25 (183)
T ss_dssp CEEEEECCC----CHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999998
No 337
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.80 E-value=0.033 Score=53.16 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=21.0
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHH
Q 006974 348 ECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 348 ~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
.+| .+++|+|+.||||||+.+.+
T Consensus 7 ~~~-~~I~l~G~~GsGKsT~~~~L 29 (215)
T 1nn5_A 7 RRG-ALIVLEGVDRAGKSTQSRKL 29 (215)
T ss_dssp CCC-CEEEEEESTTSSHHHHHHHH
T ss_pred cCC-cEEEEECCCCCCHHHHHHHH
Confidence 456 79999999999999999999
No 338
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.80 E-value=0.033 Score=53.04 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHH
Q 006974 349 CETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 349 ~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
.| .+++|+|+.||||||+.+.+
T Consensus 9 ~~-~~I~l~G~~GsGKST~~~~L 30 (212)
T 2wwf_A 9 KG-KFIVFEGLDRSGKSTQSKLL 30 (212)
T ss_dssp CS-CEEEEEESTTSSHHHHHHHH
T ss_pred cC-CEEEEEcCCCCCHHHHHHHH
Confidence 46 79999999999999999998
No 339
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.79 E-value=0.073 Score=61.79 Aligned_cols=99 Identities=16% Similarity=0.253 Sum_probs=53.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHH-HHHHHHH--HHh
Q 006974 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGH-ISRIVDI--LEL 428 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g-~~rl~~~--~~l 428 (623)
+-++|.||.|+|||++.|+++-- .|..+. .+... . ..+.+.|+ ++++..+ .+.
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~e-----lg~~~~-----~v~~~-~-------------l~sk~~gese~~lr~lF~~A~ 294 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANE-----TGAFFF-----LINGP-E-------------IMSKLAGESESNLRKAFEEAE 294 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTT-----TTCEEE-----EEEHH-H-------------HHSSCTTHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHH-----hCCeEE-----EEEhH-H-------------hhcccchHHHHHHHHHHHHHH
Confidence 56899999999999999999211 222110 11111 1 12233333 3344444 344
Q ss_pred cCCCcEEEEeCCCC-------CCCHHHHHHHHHHHHHHHh---c-CCcEEEEEcCchh
Q 006974 429 VSRESLVLIDEIGS-------GTDPSEGVALATSILQYLR---D-RVGLAVVTTHYAD 475 (623)
Q Consensus 429 ~~~~~LlLLDEp~~-------glD~~~~~~l~~all~~l~---~-~~~~vii~TH~~~ 475 (623)
...|.+|++||.=+ +-+..+.. +...++..+. . .+..||.+|...+
T Consensus 295 ~~~PsIIfIDEiDal~~~r~~~~~~~~~r-iv~~LL~~mdg~~~~~~V~VIaaTN~~d 351 (806)
T 3cf2_A 295 KNAPAIIFIDELDAIAPKREKTHGEVERR-IVSQLLTLMDGLKQRAHVIVMAATNRPN 351 (806)
T ss_dssp TSCSEEEEEESGGGTCCTTTTCCCTTHHH-HHHHHHTHHHHCCGGGCEEEEEECSSTT
T ss_pred HcCCeEEEEehhcccccccCCCCChHHHH-HHHHHHHHHhcccccCCEEEEEecCChh
Confidence 57899999999722 11222222 2222443332 2 2456788888865
No 340
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.67 E-value=0.098 Score=61.34 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 006974 352 RVVVITGPNTGGKTASMKTLGL 373 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~igl 373 (623)
..++|+||+|+|||++.+.++-
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999943
No 341
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.66 E-value=0.035 Score=51.84 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
..++|+||.||||||+.+.+
T Consensus 6 ~~i~l~G~~GsGKst~a~~L 25 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQL 25 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 67899999999999999998
No 342
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.48 E-value=0.03 Score=52.75 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.0
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 347 VECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 347 l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
+..+ .+++|+|+.||||||+.+.+
T Consensus 9 ~~~~-~~I~l~G~~GsGKsT~a~~L 32 (199)
T 2bwj_A 9 LRKC-KIIFIIGGPGSGKGTQCEKL 32 (199)
T ss_dssp HHHS-CEEEEEECTTSSHHHHHHHH
T ss_pred cCCC-CEEEEECCCCCCHHHHHHHH
Confidence 3345 78999999999999999998
No 343
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.45 E-value=0.04 Score=51.37 Aligned_cols=20 Identities=25% Similarity=0.399 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+|+.||||||+.+.+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L 26 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANI 26 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999998
No 344
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.38 E-value=0.066 Score=51.40 Aligned_cols=107 Identities=16% Similarity=0.133 Sum_probs=60.6
Q ss_pred CCceEEEEEcCCCCCHH-HHHHHHhhhhhhhhhceee-cCCCCCCccHHHHHHHHcCCchhh--hcccccccHHHHHHHH
Q 006974 349 CETRVVVITGPNTGGKT-ASMKTLGLASLMSKAGLYL-PAKNHPRLPWFDLILADIGDHQSL--EQNLSTFSGHISRIVD 424 (623)
Q Consensus 349 ~g~~~~~I~GpNgsGKS-TlLk~igl~~~~a~~G~~v-p~~~~~~l~~~d~i~~~ig~~~~~--~~~~stfS~g~~rl~~ 424 (623)
.| ++..|+||-||||| -||+.++-...-.+...++ |.- ..+++ +.+.+++|..-.. ......|- .
T Consensus 19 ~g-~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~-D~R~~--~~i~S~~g~~~~A~~~~~~~d~~----~--- 87 (195)
T 1w4r_A 19 RG-QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK-DTRYS--SSFCTHDRNTMEALPACLLRDVA----Q--- 87 (195)
T ss_dssp CC-EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETT-CCCGG--GSCCHHHHHHSEEEEESSGGGGH----H---
T ss_pred ce-EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcccc-Cccch--hhhhhccCCcccceecCCHHHHH----H---
Confidence 46 89999999999999 6777776554433334444 442 23333 2344444321100 01111111 1
Q ss_pred HHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH
Q 006974 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL 476 (623)
Q Consensus 425 ~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l 476 (623)
...+.++|++||.=-= +. +.+ +++.+.+.|..||++.++.++
T Consensus 88 ---~~~~~DvIlIDEaQFf--k~----~ve-~~~~L~~~gk~VI~~GL~~DF 129 (195)
T 1w4r_A 88 ---EALGVAVIGIDEGQFF--PD----IVE-FCEAMANAGKTVIVAALDGTF 129 (195)
T ss_dssp ---HHHTCSEEEESSGGGC--TT----HHH-HHHHHHHTTCEEEEEEESBCT
T ss_pred ---hccCCCEEEEEchhhh--HH----HHH-HHHHHHHCCCeEEEEeccccc
Confidence 1245789999997433 21 223 335566678999999998764
No 345
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.37 E-value=0.041 Score=51.42 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
+++|+|+.||||||+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L 20 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKL 20 (195)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 346
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.35 E-value=0.041 Score=52.80 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+||.||||||+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998
No 347
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.33 E-value=0.032 Score=52.87 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=23.3
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++..... .++|+|++|+|||||++.+
T Consensus 18 ~~~~~~~~~--ki~lvG~~~vGKSsLi~~l 45 (198)
T 1f6b_A 18 FLGLYKKTG--KLVFLGLDNAGKTTLLHML 45 (198)
T ss_dssp HHTCTTCCE--EEEEEEETTSSHHHHHHHH
T ss_pred HhhccCCCc--EEEEECCCCCCHHHHHHHH
Confidence 556666555 5789999999999999999
No 348
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.30 E-value=0.046 Score=54.59 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+|+.||||||+.+.+
T Consensus 5 ~lIvl~G~pGSGKSTla~~L 24 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNL 24 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHH
Confidence 68999999999999999998
No 349
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.24 E-value=0.037 Score=50.90 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+|+.||||||+.+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGREL 22 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 350
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.18 E-value=0.29 Score=47.70 Aligned_cols=110 Identities=20% Similarity=0.241 Sum_probs=53.7
Q ss_pred cCCceEEEEEcCCCCCHHH-HHHHHhhhhhhh-hhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHH
Q 006974 348 ECETRVVVITGPNTGGKTA-SMKTLGLASLMS-KAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDI 425 (623)
Q Consensus 348 ~~g~~~~~I~GpNgsGKST-lLk~igl~~~~a-~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~ 425 (623)
..| .+.+|+||-|||||| ||+.+--...-. +...+.|+.. .+.+ ...+.+++|..-.. ..+.... . +
T Consensus 26 ~~G-~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D-~R~~-~~~I~Sr~G~~~~a-~~v~~~~-d------i 94 (219)
T 3e2i_A 26 HSG-WIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAID-DRYH-KEKVVSHNGNAIEA-INISKAS-E------I 94 (219)
T ss_dssp -CC-EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-------------CBTTBCCEE-EEESSGG-G------G
T ss_pred CCc-eEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccC-Ccch-hhhHHHhcCCceee-EEeCCHH-H------H
Confidence 357 899999999999999 777761111111 1223445543 2222 23466666643211 0111110 0 0
Q ss_pred HH-hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCch
Q 006974 426 LE-LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (623)
Q Consensus 426 ~~-l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~ 474 (623)
.. +..+.++|++||.=- +|+. +.+ .+..+.+.|..||+.-=+.
T Consensus 95 ~~~i~~~~dvV~IDEaQF-f~~~----~v~-~l~~la~~gi~Vi~~GLd~ 138 (219)
T 3e2i_A 95 MTHDLTNVDVIGIDEVQF-FDDE----IVS-IVEKLSADGHRVIVAGLDM 138 (219)
T ss_dssp GGSCCTTCSEEEECCGGG-SCTH----HHH-HHHHHHHTTCEEEEEEESB
T ss_pred HHHHhcCCCEEEEechhc-CCHH----HHH-HHHHHHHCCCEEEEeeccc
Confidence 11 135789999999644 3332 233 3334445688888765554
No 351
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.15 E-value=0.047 Score=49.97 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+|+.||||||+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLL 20 (168)
T ss_dssp EEEEESCTTSCHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 352
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.11 E-value=0.39 Score=48.40 Aligned_cols=18 Identities=39% Similarity=0.532 Sum_probs=17.5
Q ss_pred EEEEcCCCCCHHHHHHHH
Q 006974 354 VVITGPNTGGKTASMKTL 371 (623)
Q Consensus 354 ~~I~GpNgsGKSTlLk~i 371 (623)
++|+||.|+||||+.+.+
T Consensus 45 ~ll~G~~G~GKt~la~~l 62 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCL 62 (323)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHH
Confidence 899999999999999999
No 353
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.06 E-value=0.049 Score=51.16 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=18.5
Q ss_pred cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
++++..... .++|+|++|+|||||++.+
T Consensus 16 ~~~~~~~~~--ki~~vG~~~vGKSsli~~l 43 (190)
T 1m2o_B 16 SLGLWNKHG--KLLFLGLDNAGKTTLLHML 43 (190)
T ss_dssp --------C--EEEEEESTTSSHHHHHHHH
T ss_pred HhhccCCcc--EEEEECCCCCCHHHHHHHH
Confidence 455555444 6899999999999999998
No 354
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.05 E-value=0.048 Score=52.33 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+||.||||||+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998
No 355
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=93.02 E-value=0.045 Score=57.73 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHH
Q 006974 350 ETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 350 g~~~~~I~GpNgsGKSTlLk~i 371 (623)
|..+++|+|+||+|||||++.+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L 199 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSL 199 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3356899999999999999999
No 356
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.94 E-value=0.055 Score=51.33 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+|+.||||||+.+.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L 35 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKL 35 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999988
No 357
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=92.91 E-value=0.11 Score=58.52 Aligned_cols=20 Identities=40% Similarity=0.622 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+||.|+||||++..+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~l 184 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKL 184 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 69999999999999999887
No 358
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.82 E-value=0.053 Score=52.65 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+||.||||||+.+.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~L 27 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRI 27 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999998
No 359
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=92.80 E-value=0.32 Score=50.27 Aligned_cols=117 Identities=11% Similarity=0.046 Sum_probs=58.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHh-hhhhhhhhc-------eeecCCC-CCCccHHHHHHHHcCCchhhhcccccccHHH
Q 006974 349 CETRVVVITGPNTGGKTASMKTLG-LASLMSKAG-------LYLPAKN-HPRLPWFDLILADIGDHQSLEQNLSTFSGHI 419 (623)
Q Consensus 349 ~g~~~~~I~GpNgsGKSTlLk~ig-l~~~~a~~G-------~~vp~~~-~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~ 419 (623)
.+ ..+.|+||.|+|||++.+.+. -+.-.+..+ .++-+.. ......+..++..+.... .+. ...+
T Consensus 44 ~~-~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~-----~~~-~~~~ 116 (318)
T 3te6_A 44 QN-KLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKEN-----LCG-DISL 116 (318)
T ss_dssp CC-CEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC-------C-CCCH
T ss_pred CC-CeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCC-----CCc-hHHH
Confidence 44 678999999999999999992 221111111 1222211 111224556666553221 110 0011
Q ss_pred HHHHHHHH----hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC--CcEEEEEcCchhH
Q 006974 420 SRIVDILE----LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR--VGLAVVTTHYADL 476 (623)
Q Consensus 420 ~rl~~~~~----l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~--~~~vii~TH~~~l 476 (623)
..+..... ....+-+++|||.-.=. ....|.. ++++.... ..++|.++..+++
T Consensus 117 ~~L~~~f~~~~~~~~~~~ii~lDE~d~l~---~q~~L~~-l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 117 EALNFYITNVPKAKKRKTLILIQNPENLL---SEKILQY-FEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHHHHSCGGGSCEEEEEEECCSSSC---CTHHHHH-HHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHHHHHHHhhhccCCceEEEEecHHHhh---cchHHHH-HHhcccccCCcEEEEEEecCccc
Confidence 22322222 23566799999986655 2333333 55533222 3466777877653
No 360
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.79 E-value=0.051 Score=54.45 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
..++|+|++|+|||||++.+
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l 23 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNAL 23 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 361
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.72 E-value=0.059 Score=57.06 Aligned_cols=20 Identities=25% Similarity=0.210 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
..++|+||+||||||+++.+
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~ 55 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKML 55 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHH
Confidence 46799999999999999998
No 362
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=92.63 E-value=0.056 Score=58.36 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+||+|||||++.+
T Consensus 181 ~kvaivG~~gvGKSTLln~l 200 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAI 200 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 57899999999999999999
No 363
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.62 E-value=0.061 Score=51.42 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-+++|||+-||||||+.+.+
T Consensus 13 ~iIgltG~~GSGKSTva~~L 32 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEIL 32 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999998
No 364
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=92.60 E-value=0.23 Score=50.59 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=20.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHH
Q 006974 349 CETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 349 ~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
.| .+++|+||-|+|||||++.+
T Consensus 30 ~~-~~v~i~G~~G~GKT~Ll~~~ 51 (350)
T 2qen_A 30 NY-PLTLLLGIRRVGKSSLLRAF 51 (350)
T ss_dssp HC-SEEEEECCTTSSHHHHHHHH
T ss_pred cC-CeEEEECCCcCCHHHHHHHH
Confidence 35 79999999999999999998
No 365
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.59 E-value=0.059 Score=52.34 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
+++|+||.||||||+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLV 20 (223)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999998
No 366
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=92.53 E-value=0.076 Score=56.13 Aligned_cols=19 Identities=32% Similarity=0.380 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+|++|+|||||++.+
T Consensus 3 ~v~IVG~pnvGKSTL~n~L 21 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNAL 21 (368)
T ss_dssp SEEEECCSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3789999999999999999
No 367
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.53 E-value=0.067 Score=51.60 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
..++|+|+.||||||+.+.+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~L 24 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNL 24 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999998
No 368
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.49 E-value=0.071 Score=50.56 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+|+.||||||+.+.+
T Consensus 21 ~~I~l~G~~GsGKST~a~~L 40 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKL 40 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999998
No 369
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.41 E-value=0.037 Score=56.51 Aligned_cols=20 Identities=20% Similarity=0.479 Sum_probs=16.1
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+||.||||||+.+.+
T Consensus 6 ~iIgItG~sGSGKSTva~~L 25 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTF 25 (290)
T ss_dssp CEEEEESCC---CCTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999998
No 370
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.41 E-value=0.068 Score=49.80 Aligned_cols=20 Identities=35% Similarity=0.694 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 49 ~~i~vvG~~g~GKSsll~~l 68 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLL 68 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 371
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.40 E-value=0.059 Score=52.08 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+||.||||||+.+.+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~L 25 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELI 25 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999998
No 372
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.33 E-value=0.067 Score=52.95 Aligned_cols=20 Identities=15% Similarity=0.376 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+|+.||||||+-+.+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L 42 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKI 42 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999988
No 373
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.31 E-value=0.072 Score=48.91 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
++++|+|+-||||||+-+.+
T Consensus 8 ~~i~l~G~~GsGKSTva~~L 27 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQEL 27 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 58999999999999999998
No 374
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.30 E-value=0.055 Score=50.45 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+|+.||||||+-+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRL 22 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 375
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.29 E-value=0.069 Score=49.61 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|++|+|||||++.+
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l 36 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQL 36 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999999
No 376
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.29 E-value=0.084 Score=47.53 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+|+.|+|||||++.+
T Consensus 7 ~i~v~G~~~~GKssl~~~l 25 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRY 25 (168)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5789999999999999998
No 377
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.22 E-value=0.056 Score=49.72 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|++|+|||||++.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l 38 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRL 38 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999998
No 378
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.15 E-value=0.068 Score=54.12 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh
Q 006974 351 TRVVVITGPNTGGKTASMKTLG 372 (623)
Q Consensus 351 ~~~~~I~GpNgsGKSTlLk~ig 372 (623)
..+++|+|+.||||||+.+.+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999994
No 379
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.06 E-value=0.077 Score=53.66 Aligned_cols=20 Identities=15% Similarity=0.399 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+|++||||||+.+.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L 22 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREF 22 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999998
No 380
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=92.02 E-value=0.5 Score=52.40 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHH
Q 006974 351 TRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 351 ~~~~~I~GpNgsGKSTlLk~i 371 (623)
.++++|+||-|.|||||.+.+
T Consensus 147 ~~~v~I~G~~GiGKTtLa~~~ 167 (591)
T 1z6t_A 147 PGWVTIHGMAGCGKSVLAAEA 167 (591)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHH
Confidence 489999999999999999988
No 381
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.89 E-value=0.093 Score=46.93 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+|+.|+|||||++.+
T Consensus 3 ki~v~G~~~~GKSsli~~l 21 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRL 21 (161)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 382
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.81 E-value=0.1 Score=47.56 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 10 ~~i~v~G~~~~GKssl~~~l 29 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRF 29 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35799999999999999999
No 383
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.81 E-value=0.1 Score=47.09 Aligned_cols=19 Identities=32% Similarity=0.351 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+|+.|+|||||++.+
T Consensus 8 ~i~v~G~~~~GKssli~~l 26 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRY 26 (170)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5799999999999999998
No 384
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.80 E-value=0.083 Score=50.74 Aligned_cols=19 Identities=16% Similarity=0.406 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+||.||||||+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFI 20 (214)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998
No 385
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.77 E-value=0.082 Score=47.21 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++++|+.|+|||||++.+
T Consensus 5 ~i~v~G~~~~GKssl~~~l 23 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQL 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999998
No 386
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.75 E-value=0.12 Score=46.68 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+|+.|+|||||++.+
T Consensus 5 ~i~v~G~~~~GKssli~~l 23 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRF 23 (172)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999999
No 387
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.74 E-value=0.093 Score=49.63 Aligned_cols=21 Identities=38% Similarity=0.658 Sum_probs=18.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHH
Q 006974 350 ETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 350 g~~~~~I~GpNgsGKSTlLk~i 371 (623)
| .+.+|+||.|+||||++-.+
T Consensus 3 g-~i~vi~G~~gsGKTT~ll~~ 23 (184)
T 2orw_A 3 G-KLTVITGPMYSGKTTELLSF 23 (184)
T ss_dssp C-CEEEEEESTTSSHHHHHHHH
T ss_pred c-EEEEEECCCCCCHHHHHHHH
Confidence 5 78999999999999998444
No 388
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.65 E-value=0.1 Score=51.44 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=20.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHH
Q 006974 349 CETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 349 ~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
++ .+++|+||.||||||+.+.+
T Consensus 28 ~~-~~I~l~G~~GsGKsT~a~~L 49 (243)
T 3tlx_A 28 PD-GRYIFLGAPGSGKGTQSLNL 49 (243)
T ss_dssp CC-EEEEEECCTTSSHHHHHHHH
T ss_pred CC-cEEEEECCCCCCHHHHHHHH
Confidence 45 68999999999999999998
No 389
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.64 E-value=0.089 Score=47.11 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+|+.|+|||||++.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l 23 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQF 23 (167)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 390
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.58 E-value=0.11 Score=50.53 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHH
Q 006974 349 CETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 349 ~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
+| .+++|.||.||||||+++.+
T Consensus 5 ~g-~~i~~eG~~gsGKsT~~~~l 26 (213)
T 4edh_A 5 TG-LFVTLEGPEGAGKSTNRDYL 26 (213)
T ss_dssp CC-EEEEEECSTTSSHHHHHHHH
T ss_pred Cc-eEEEEEcCCCCCHHHHHHHH
Confidence 47 79999999999999999998
No 391
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.57 E-value=0.092 Score=47.26 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+|+.|+|||||++.+
T Consensus 5 ~i~v~G~~~~GKssli~~l 23 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRF 23 (170)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998
No 392
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.57 E-value=0.092 Score=47.05 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 5 ~~i~v~G~~~~GKssl~~~l 24 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQF 24 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 35799999999999999998
No 393
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.56 E-value=0.11 Score=47.32 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
..++|+|+.|+|||||++.+
T Consensus 9 ~~i~v~G~~~~GKssl~~~l 28 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAI 28 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999998
No 394
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.56 E-value=0.092 Score=47.36 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+|+.|+|||||++.+
T Consensus 8 ~i~v~G~~~~GKSsli~~l 26 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRF 26 (170)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5799999999999999998
No 395
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=91.54 E-value=0.52 Score=48.62 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
..+.++||.|.||||+.+.+
T Consensus 25 ~a~L~~G~~G~GKt~~a~~l 44 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYAL 44 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHH
T ss_pred eeEEEECCCCchHHHHHHHH
Confidence 57899999999999999998
No 396
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.47 E-value=0.092 Score=47.33 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+|+.|+|||||++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l 22 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIF 22 (166)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999999
No 397
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.45 E-value=0.095 Score=47.86 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 9 ~~i~v~G~~~~GKSsli~~l 28 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRY 28 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 398
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.37 E-value=0.098 Score=47.69 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+|+.|+|||||++.+
T Consensus 9 ~i~v~G~~~~GKSsli~~l 27 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRY 27 (177)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 399
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.36 E-value=0.1 Score=46.95 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+|+.|+|||||++.+
T Consensus 5 ki~v~G~~~~GKssli~~l 23 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQF 23 (167)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999998
No 400
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.34 E-value=0.1 Score=47.22 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+|+.|+|||||++.+
T Consensus 4 ki~ivG~~~~GKSsli~~l 22 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTF 22 (169)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998
No 401
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.32 E-value=0.097 Score=47.20 Aligned_cols=19 Identities=16% Similarity=0.359 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+|+.|+|||||++.+
T Consensus 5 ~i~v~G~~~~GKssli~~l 23 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRF 23 (170)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5799999999999999998
No 402
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.30 E-value=1.7 Score=46.63 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=19.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh
Q 006974 351 TRVVVITGPNTGGKTASMKTLG 372 (623)
Q Consensus 351 ~~~~~I~GpNgsGKSTlLk~ig 372 (623)
..+++++|++|+||||+.-.++
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3789999999999999987774
No 403
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=91.26 E-value=0.49 Score=48.42 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
..+++.||.|.||||+.+.+
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~l 38 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLEL 38 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999998
No 404
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.23 E-value=0.1 Score=47.35 Aligned_cols=19 Identities=32% Similarity=0.323 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+|+.|+|||||++.+
T Consensus 6 ki~i~G~~~vGKSsl~~~l 24 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLF 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHH
Confidence 5899999999999999998
No 405
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.17 E-value=0.1 Score=48.49 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 24 ~~i~v~G~~~~GKSsli~~l 43 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSL 43 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999999
No 406
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.16 E-value=0.091 Score=51.66 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=18.2
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHH
Q 006974 348 ECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 348 ~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
.+| .+++|.||.||||||+.+.+
T Consensus 23 ~~g-~~I~~eG~~GsGKsT~~~~l 45 (227)
T 3v9p_A 23 ARG-KFITFEGIDGAGKTTHLQWF 45 (227)
T ss_dssp CCC-CEEEEECCC---CHHHHHHH
T ss_pred cCC-eEEEEECCCCCCHHHHHHHH
Confidence 467 89999999999999999998
No 407
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.15 E-value=0.11 Score=47.03 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l 27 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRL 27 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 408
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=91.11 E-value=0.094 Score=49.20 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=4.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 21 ~~i~v~G~~~~GKssli~~l 40 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMF 40 (208)
T ss_dssp EEEEEC--------------
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 409
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.04 E-value=0.11 Score=48.09 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 24 ~~i~v~G~~~~GKSsli~~l 43 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNAL 43 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999998
No 410
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.97 E-value=0.12 Score=54.00 Aligned_cols=20 Identities=35% Similarity=0.554 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+||+||||||+.+.+
T Consensus 8 ~lI~I~GptgSGKTtla~~L 27 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEV 27 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHH
Confidence 58999999999999999988
No 411
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=90.94 E-value=0.12 Score=52.19 Aligned_cols=20 Identities=20% Similarity=0.405 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|++|+|||||++.+
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L 23 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLI 23 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 412
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.88 E-value=0.14 Score=49.85 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.5
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHH
Q 006974 346 KVECETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 346 ~l~~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
.+... ++++|+||.||||||.-+.|
T Consensus 25 ~~~k~-kiI~llGpPGsGKgTqa~~L 49 (217)
T 3umf_A 25 KLAKA-KVIFVLGGPGSGKGTQCEKL 49 (217)
T ss_dssp CTTSC-EEEEEECCTTCCHHHHHHHH
T ss_pred hccCC-cEEEEECCCCCCHHHHHHHH
Confidence 34455 89999999999999999888
No 413
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.85 E-value=0.11 Score=47.99 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+|+.|+|||||++.+
T Consensus 3 ki~v~G~~~~GKSsli~~l 21 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRL 21 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998
No 414
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=90.85 E-value=0.16 Score=54.92 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
..++|+|+.|+|||||++.+
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l 43 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRI 43 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 57999999999999999999
No 415
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.80 E-value=0.13 Score=50.95 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=20.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHH
Q 006974 349 CETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 349 ~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
+| .+++|.|+.||||||+++.+
T Consensus 26 ~~-~~i~~eG~~GsGKsT~~~~l 47 (236)
T 3lv8_A 26 NA-KFIVIEGLEGAGKSTAIQVV 47 (236)
T ss_dssp CC-CEEEEEESTTSCHHHHHHHH
T ss_pred CC-eEEEEECCCCCCHHHHHHHH
Confidence 46 79999999999999999998
No 416
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=90.77 E-value=0.12 Score=47.55 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+|+.|+|||||++.+
T Consensus 6 ki~v~G~~~~GKSsli~~l 24 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQL 24 (189)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999999
No 417
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=90.76 E-value=0.12 Score=47.20 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 10 ~~i~v~G~~~~GKssli~~l 29 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQF 29 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 418
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=90.75 E-value=0.12 Score=46.38 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+|+.|+|||||++.+
T Consensus 8 ~i~v~G~~~~GKssli~~l 26 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRF 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999998
No 419
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.66 E-value=0.15 Score=54.74 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+|++||||||+.+.+
T Consensus 259 ~lIil~G~pGSGKSTla~~L 278 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEH 278 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 79999999999999999998
No 420
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=90.65 E-value=0.12 Score=46.97 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+|+.|+|||||++.+
T Consensus 16 ~i~v~G~~~~GKssli~~l 34 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRF 34 (179)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999998
No 421
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.55 E-value=0.11 Score=48.18 Aligned_cols=20 Identities=35% Similarity=0.531 Sum_probs=18.2
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 15 ~ki~vvG~~~~GKssL~~~l 34 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWI 34 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35799999999999999988
No 422
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.53 E-value=0.14 Score=49.78 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHH
Q 006974 349 CETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 349 ~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
+| .+++|.|+.||||||.++.+
T Consensus 2 ~g-~~i~~eG~~gsGKsT~~~~l 23 (213)
T 4tmk_A 2 RS-KYIVIEGLEGAGKTTARNVV 23 (213)
T ss_dssp CC-CEEEEEECTTSCHHHHHHHH
T ss_pred CC-eEEEEECCCCCCHHHHHHHH
Confidence 36 78999999999999999998
No 423
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=90.52 E-value=0.15 Score=47.14 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 8 ~ki~v~G~~~~GKSsli~~l 27 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRL 27 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999999
No 424
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.52 E-value=0.64 Score=48.47 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 006974 352 RVVVITGPNTGGKTASMKTLG 372 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~ig 372 (623)
.+++|+|+.|+||||++..++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~ 100 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALG 100 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999983
No 425
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=90.51 E-value=0.13 Score=47.37 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 12 ~ki~v~G~~~~GKSsli~~l 31 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQY 31 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 35799999999999999998
No 426
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.50 E-value=0.13 Score=46.08 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+|+.|+|||||++.+
T Consensus 2 ki~~~G~~~~GKssl~~~l 20 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKL 20 (164)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3789999999999999998
No 427
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.49 E-value=0.13 Score=46.68 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 16 ~~i~v~G~~~~GKSsli~~l 35 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQF 35 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 428
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.48 E-value=0.13 Score=47.06 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 19 ~ki~v~G~~~~GKSsli~~l 38 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQF 38 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 429
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=90.48 E-value=0.13 Score=47.84 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l 45 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRF 45 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHH
Confidence 35799999999999999998
No 430
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.43 E-value=0.15 Score=52.60 Aligned_cols=20 Identities=40% Similarity=0.629 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+||+|||||||.+.+
T Consensus 4 ~~i~i~GptgsGKt~la~~L 23 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVML 23 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHH
Confidence 68999999999999999988
No 431
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.41 E-value=0.13 Score=47.89 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=18.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~ 40 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRY 40 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999876
No 432
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.40 E-value=0.14 Score=49.31 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
..++|+|+.||||||+.+.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~L 25 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFI 25 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999998
No 433
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.31 E-value=0.14 Score=52.94 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+||+||||||+-+.+
T Consensus 6 ~~i~i~GptGsGKTtla~~L 25 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMAL 25 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999988
No 434
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=90.28 E-value=0.14 Score=47.22 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 11 ~ki~v~G~~~~GKSsli~~l 30 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQF 30 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35799999999999999998
No 435
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.25 E-value=0.15 Score=48.54 Aligned_cols=20 Identities=35% Similarity=0.694 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l 32 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLL 32 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 436
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.21 E-value=0.14 Score=46.57 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+|+.|+|||||++.+
T Consensus 8 ki~v~G~~~~GKssl~~~l 26 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCF 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5789999999999999998
No 437
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.20 E-value=1.4 Score=48.34 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 006974 352 RVVVITGPNTGGKTASMKTLG 372 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~ig 372 (623)
.+++|+|++|+||||++..++
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999984
No 438
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.20 E-value=0.15 Score=46.94 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l 38 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQF 38 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46799999999999999998
No 439
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.11 E-value=0.14 Score=47.35 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=18.2
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 8 ~ki~v~G~~~vGKSsli~~l 27 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVF 27 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 35789999999999999998
No 440
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.09 E-value=0.16 Score=47.02 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++++|+.|+|||||++.+
T Consensus 22 ~ki~vvG~~~~GKSsli~~l 41 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQL 41 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHH
Confidence 36789999999999999999
No 441
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.09 E-value=0.13 Score=49.30 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+|+.||||||+.+.+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l 23 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRV 23 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999988
No 442
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.08 E-value=0.16 Score=48.57 Aligned_cols=20 Identities=30% Similarity=0.290 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+|+.|+|||||++.+
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l 50 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERT 50 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 68999999999999999988
No 443
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.03 E-value=0.15 Score=47.75 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 15 ~ki~v~G~~~~GKSsli~~l 34 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQF 34 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 444
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.03 E-value=0.9 Score=52.26 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 006974 353 VVVITGPNTGGKTASMKTLG 372 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~ig 372 (623)
.++|+||.|+|||++.+.++
T Consensus 490 ~~ll~G~~GtGKT~la~~la 509 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLS 509 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 68999999999999999994
No 445
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=90.03 E-value=0.15 Score=46.57 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+|+.|+|||||++.+
T Consensus 14 ki~v~G~~~~GKSsli~~l 32 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRF 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5799999999999999998
No 446
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.01 E-value=0.15 Score=46.46 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 11 ~~i~v~G~~~~GKssli~~l 30 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRF 30 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHH
Confidence 36799999999999999998
No 447
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.99 E-value=0.16 Score=52.24 Aligned_cols=20 Identities=35% Similarity=0.627 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+||+|||||||...+
T Consensus 11 ~~i~i~GptgsGKt~la~~L 30 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIEL 30 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHH
Confidence 68999999999999999988
No 448
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=89.99 E-value=0.15 Score=48.11 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l 43 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTF 43 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 449
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.96 E-value=0.17 Score=49.46 Aligned_cols=20 Identities=35% Similarity=0.405 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|.|+-||||||+.+.+
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l 22 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLL 22 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 68999999999999999998
No 450
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.94 E-value=0.17 Score=48.74 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=19.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHH
Q 006974 349 CETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 349 ~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
.| ..++|+||.|+|||||...+
T Consensus 33 ~g-~~ilI~GpsGsGKStLA~~L 54 (205)
T 2qmh_A 33 YG-LGVLITGDSGVGKSETALEL 54 (205)
T ss_dssp TT-EEEEEECCCTTTTHHHHHHH
T ss_pred CC-EEEEEECCCCCCHHHHHHHH
Confidence 35 78999999999999998877
No 451
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=89.82 E-value=0.16 Score=47.72 Aligned_cols=20 Identities=35% Similarity=0.403 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l 28 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQY 28 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHH
Confidence 46899999999999999998
No 452
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.81 E-value=0.18 Score=47.95 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l 46 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRF 46 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHH
Confidence 36799999999999999988
No 453
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=89.80 E-value=0.41 Score=55.23 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 006974 353 VVVITGPNTGGKTASMKTLGL 373 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~igl 373 (623)
.+.|+||.|+|||++.+.++-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~ 543 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAE 543 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999943
No 454
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=89.76 E-value=0.2 Score=49.07 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=20.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHH
Q 006974 349 CETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 349 ~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
.| .+++|.|+.||||||+.+.+
T Consensus 20 ~~-~~i~~~G~~g~GKst~~~~l 41 (223)
T 3ld9_A 20 GS-MFITFEGIDGSGKTTQSHLL 41 (223)
T ss_dssp CC-EEEEEECSTTSSHHHHHHHH
T ss_pred CC-eEEEEECCCCCCHHHHHHHH
Confidence 56 89999999999999999998
No 455
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=89.74 E-value=0.16 Score=47.06 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 17 ~ki~v~G~~~~GKSsli~~l 36 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRF 36 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHH
Confidence 35899999999999999998
No 456
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=89.73 E-value=0.17 Score=46.42 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+|+.|+|||||++.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l 25 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISY 25 (186)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 457
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=89.72 E-value=0.17 Score=46.74 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 19 ~~i~v~G~~~~GKssl~~~l 38 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKF 38 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999999
No 458
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=89.67 E-value=0.18 Score=46.27 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l 26 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQF 26 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHH
Confidence 46899999999999999998
No 459
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.52 E-value=0.17 Score=47.16 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l 28 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRF 28 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 46899999999999999999
No 460
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=89.40 E-value=0.073 Score=61.45 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 006974 352 RVVVITGPNTGGKTASMKTLG 372 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~ig 372 (623)
.-++|+||.|+||||+.+.++
T Consensus 208 ~~vlL~G~~GtGKT~la~~la 228 (758)
T 1r6b_X 208 NNPLLVGESGVGKTAIAEGLA 228 (758)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHH
Confidence 578999999999999999993
No 461
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=89.37 E-value=0.18 Score=46.74 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 23 ~ki~vvG~~~~GKSsli~~l 42 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRY 42 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999998
No 462
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.34 E-value=0.21 Score=48.64 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
..++|+|+.||||||+.+.+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~L 36 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKL 36 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999998
No 463
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=89.31 E-value=0.18 Score=47.13 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 24 ~ki~vvG~~~~GKSsli~~l 43 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRF 43 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHH
Confidence 35899999999999999998
No 464
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=89.23 E-value=0.18 Score=47.53 Aligned_cols=20 Identities=15% Similarity=0.320 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l 45 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQF 45 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHH
Confidence 35799999999999999998
No 465
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=89.21 E-value=0.19 Score=46.96 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+|+.|+|||||++.+
T Consensus 28 ki~vvG~~~~GKSsLi~~l 46 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERF 46 (192)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999999
No 466
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=89.20 E-value=0.18 Score=47.25 Aligned_cols=20 Identities=20% Similarity=0.395 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l 40 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVV 40 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999987
No 467
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=89.03 E-value=0.22 Score=48.55 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHH
Q 006974 349 CETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 349 ~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
+| .++++.|+.||||||..+.+
T Consensus 4 ~g-~~i~~eG~~g~GKst~~~~l 25 (216)
T 3tmk_A 4 RG-KLILIEGLDRTGKTTQCNIL 25 (216)
T ss_dssp CC-CEEEEEECSSSSHHHHHHHH
T ss_pred CC-eEEEEECCCCCCHHHHHHHH
Confidence 56 79999999999999999998
No 468
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=89.02 E-value=0.2 Score=46.62 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 22 ~ki~v~G~~~~GKSsli~~l 41 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQF 41 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHH
Confidence 35789999999999999998
No 469
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=89.01 E-value=0.19 Score=49.61 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 22 l~I~lvG~~g~GKSSlin~l 41 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSI 41 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 46899999999999999999
No 470
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=88.99 E-value=0.2 Score=45.71 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=18.2
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 9 ~ki~v~G~~~~GKssl~~~~ 28 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISY 28 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 35789999999999999998
No 471
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.96 E-value=0.19 Score=46.71 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+|+.|+|||||++.+
T Consensus 25 ki~v~G~~~~GKSsli~~l 43 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRY 43 (191)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 5799999999999999998
No 472
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=88.94 E-value=0.21 Score=47.90 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
..++|+|+.|+|||||++.+
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l 58 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKL 58 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 68899999999999999998
No 473
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.91 E-value=0.21 Score=46.17 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l 36 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQF 36 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999998
No 474
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=88.86 E-value=0.21 Score=46.21 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 16 ~~i~v~G~~~~GKssli~~l 35 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRF 35 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 475
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=88.83 E-value=0.21 Score=46.34 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 21 ~ki~v~G~~~~GKSsli~~l 40 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRF 40 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 476
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=88.80 E-value=0.2 Score=46.57 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 22 ~ki~v~G~~~~GKSsli~~l 41 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKL 41 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 477
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=88.79 E-value=0.21 Score=46.82 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l 28 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRY 28 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35799999999999999998
No 478
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=88.79 E-value=0.2 Score=47.09 Aligned_cols=20 Identities=40% Similarity=0.429 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 25 ~ki~vvG~~~~GKSsli~~l 44 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQF 44 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHH
Confidence 56899999999999999998
No 479
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=88.76 E-value=0.21 Score=46.35 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 23 ~ki~v~G~~~~GKSsli~~l 42 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVI 42 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 480
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=88.74 E-value=0.19 Score=50.28 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+|+.|+|||||++++
T Consensus 10 ~I~vvG~~g~GKSTLin~L 28 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSL 28 (274)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999997
No 481
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=88.73 E-value=0.22 Score=46.46 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l 43 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAF 43 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHH
Confidence 36899999999999999998
No 482
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=88.72 E-value=0.2 Score=47.10 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l 28 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRF 28 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 36799999999999999998
No 483
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=88.68 E-value=0.22 Score=50.92 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
..++|+|++|+|||||++.+
T Consensus 8 g~V~ivG~~nvGKSTLln~l 27 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNL 27 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 484
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.66 E-value=0.23 Score=47.88 Aligned_cols=19 Identities=37% Similarity=0.641 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
+++|+||.||||+|.-+.|
T Consensus 2 ~Iil~GpPGsGKgTqa~~L 20 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRL 20 (206)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999988
No 485
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.54 E-value=0.22 Score=46.50 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 29 ~ki~v~G~~~vGKSsli~~l 48 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRF 48 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 486
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=88.52 E-value=0.23 Score=49.47 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 006974 353 VVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~i 371 (623)
.++|+|+.|+|||||++.+
T Consensus 3 kI~lvG~~n~GKSTL~n~L 21 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNAL 21 (256)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 487
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=88.51 E-value=0.22 Score=46.68 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l 49 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKL 49 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 56899999999999999998
No 488
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=88.51 E-value=0.24 Score=46.43 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~ 26 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIF 26 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999998
No 489
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=88.50 E-value=0.24 Score=46.00 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
..++|+|+.|+|||||++.+
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l 37 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQV 37 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999999
No 490
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.48 E-value=0.23 Score=46.64 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 29 ~ki~v~G~~~~GKSsli~~l 48 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRL 48 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHH
Confidence 56899999999999999998
No 491
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.46 E-value=0.28 Score=51.11 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
.+++|+||.|+|||||-..+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~L 60 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDL 60 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 68999999999999999988
No 492
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=88.44 E-value=0.2 Score=46.25 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 22 ~~i~v~G~~~~GKSsli~~l 41 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQF 41 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 493
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=88.40 E-value=0.23 Score=49.04 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 23 ~~I~lvG~~g~GKStl~n~l 42 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSI 42 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 494
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=88.34 E-value=0.24 Score=50.64 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 11 g~v~ivG~~nvGKSTLin~l 30 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNL 30 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 48999999999999999999
No 495
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=88.25 E-value=0.24 Score=46.33 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 21 ~ki~~~G~~~~GKssl~~~l 40 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSY 40 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 496
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.23 E-value=0.24 Score=46.66 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 21 ~~i~v~G~~~~GKSsli~~l 40 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRF 40 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 497
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=88.22 E-value=0.23 Score=47.27 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 006974 352 RVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~i 371 (623)
-.++|+|+.|+|||||++.+
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l 48 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVF 48 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 498
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=88.11 E-value=0.27 Score=51.53 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhh
Q 006974 352 RVVVITGPNTGGKTASMKTLGLA 374 (623)
Q Consensus 352 ~~~~I~GpNgsGKSTlLk~igl~ 374 (623)
..++|+|..||||||++|++.++
T Consensus 10 ~k~lllG~~~sGKsT~~kq~~~~ 32 (354)
T 2xtz_A 10 RKLLLLGAGESGKSTIFKQIKLL 32 (354)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eeEEEECCCCCcHHHHHHHHHHH
Confidence 35799999999999999999644
No 499
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=88.10 E-value=0.13 Score=50.95 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 006974 353 VVVITGPNTGGKTASMKTLG 372 (623)
Q Consensus 353 ~~~I~GpNgsGKSTlLk~ig 372 (623)
.++|+||.|+||||+.+.++
T Consensus 46 ~vll~G~~GtGKT~la~~la 65 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVA 65 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 36899999999999999993
No 500
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=87.98 E-value=0.31 Score=45.94 Aligned_cols=22 Identities=32% Similarity=0.256 Sum_probs=19.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHH
Q 006974 349 CETRVVVITGPNTGGKTASMKTL 371 (623)
Q Consensus 349 ~g~~~~~I~GpNgsGKSTlLk~i 371 (623)
.| .-++|+|++|+||||+.-.+
T Consensus 15 ~G-~gvli~G~SGaGKStlal~L 36 (181)
T 3tqf_A 15 DK-MGVLITGEANIGKSELSLAL 36 (181)
T ss_dssp TT-EEEEEEESSSSSHHHHHHHH
T ss_pred CC-EEEEEEcCCCCCHHHHHHHH
Confidence 46 78999999999999998776
Done!