Your job contains 1 sequence.
>006975
MELDPDDVFRDDDEESDNEFYQEHEATKEYVVYLVDASPKMFSTTCPAEDQTDETHFHIA
VSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAEREQLDRPTARFIKE
FDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRKGSSKTADKRILLFTNEDDPF
GSIKGAAKNDMTRTTMQRAKDAQDLGISIELLPLSPPDEEFKVSHFYADMIGLEGDDLAL
FMPSAGQKLEDMKDQLRKRMFSKRIVKRISFIIANGLSIELNTYALIRPTVPGAITWLDS
VTNHPLKTERSFICADTGALMQEPAKRFQPYKGENIKFSVQELSEIKRVSTGHLRLHGFK
PLSYLKDYHNLRPSTFVFPSDKEVVGSTCIFIALHRSMLRLNRFAVAFYGNPSNPRLVAL
VAQDEIVRAGGQVEPPGMHMIYLPYSDDIRPVEELHSDTDAVPRASDDEVKKAAALMKRI
DLKDFSVCQFANPSLQRHYAVLQALALEEDDMPEIKDETVPDEEGMARPGVVKAVEEFKL
SVYGDNYDEEGDVKVSEASRKRKAATENAAKECANYDWADLADKGKLKEMTVQELKLYLM
AHNLSTTGRKETLISRILTHMGK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 006975
(623 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2035495 - symbol:KU70 "KU70 homolog" species:3... 2247 5.7e-233 1
UNIPROTKB|Q7F1M0 - symbol:KU70 "ATP-dependent DNA helicas... 2170 8.3e-225 1
UNIPROTKB|O93257 - symbol:XRCC6 "X-ray repair cross-compl... 703 2.4e-69 1
UNIPROTKB|F1NED5 - symbol:XRCC6 "X-ray repair cross-compl... 694 2.1e-68 1
ZFIN|ZDB-GENE-030131-6420 - symbol:xrcc6 "X-ray repair co... 694 2.1e-68 1
UNIPROTKB|F1NII5 - symbol:XRCC6 "X-ray repair cross-compl... 670 7.4e-66 1
UNIPROTKB|E9PT85 - symbol:Xrcc6 "Protein Xrcc6" species:1... 664 3.2e-65 1
UNIPROTKB|Q6AZ64 - symbol:Xrcc6 "X-ray repair complementi... 664 3.2e-65 1
MGI|MGI:95606 - symbol:Xrcc6 "X-ray repair complementing ... 662 5.2e-65 1
RGD|2643 - symbol:Xrcc6 "X-ray repair complementing defec... 659 1.1e-64 1
UNIPROTKB|P12956 - symbol:XRCC6 "X-ray repair cross-compl... 657 1.8e-64 1
UNIPROTKB|E2RRK6 - symbol:XRCC6 "Uncharacterized protein"... 634 4.8e-62 1
UNIPROTKB|F1SRE0 - symbol:XRCC6 "Uncharacterized protein"... 633 6.2e-62 1
UNIPROTKB|F1MMD5 - symbol:XRCC6 "Uncharacterized protein"... 620 1.5e-60 1
UNIPROTKB|J9NUS9 - symbol:XRCC6 "Uncharacterized protein"... 616 3.9e-60 1
UNIPROTKB|B1AHC9 - symbol:XRCC6 "X-ray repair cross-compl... 613 8.1e-60 1
UNIPROTKB|B1AHC8 - symbol:XRCC6 "X-ray repair complementi... 576 1.1e-58 2
DICTYBASE|DDB_G0286069 - symbol:ku70 "DNA-dependent prote... 381 2.4e-54 2
UNIPROTKB|F5H1I8 - symbol:XRCC6 "X-ray repair cross-compl... 552 2.4e-53 1
POMBASE|SPCC126.02c - symbol:pku70 "Ku domain protein Pku... 470 1.2e-44 1
ASPGD|ASPL0000064203 - symbol:nkuA species:162425 "Emeric... 425 3.2e-38 1
FB|FBgn0011774 - symbol:Irbp "Inverted repeat-binding pro... 206 3.8e-13 1
SGD|S000004897 - symbol:YKU70 "Subunit of the telomeric K... 172 1.8e-09 1
CGD|CAL0001964 - symbol:CAS1 species:5476 "Candida albica... 77 0.00073 4
UNIPROTKB|Q59TZ7 - symbol:CAS1 "Potential Ku DNA binding ... 77 0.00073 4
>TAIR|locus:2035495 [details] [associations]
symbol:KU70 "KU70 homolog" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0005958 "DNA-dependent protein kinase-DNA
ligase 4 complex" evidence=IEA] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000723 "telomere maintenance"
evidence=TAS] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS] [GO:0009408
"response to heat" evidence=IEP] InterPro:IPR003034
InterPro:IPR005160 InterPro:IPR006164 InterPro:IPR006165
Pfam:PF02037 Pfam:PF02735 Pfam:PF03730 PIRSF:PIRSF003033
PROSITE:PS50800 SMART:SM00513 SMART:SM00559 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005737 GO:GO:0006281
GO:GO:0009408 Gene3D:1.10.720.30 GO:GO:0006310 GO:GO:0003690
GO:GO:0004003 EMBL:AC051629 GO:GO:0000723 GO:GO:0005958
GO:GO:0006303 EMBL:AF283759 EMBL:AK221642 IPI:IPI00530682
PIR:D86305 RefSeq:NP_564012.1 UniGene:At.22247 HSSP:P12956
ProteinModelPortal:Q9FQ08 SMR:Q9FQ08 IntAct:Q9FQ08
MINT:MINT-1212489 STRING:Q9FQ08 PaxDb:Q9FQ08 PRIDE:Q9FQ08
EnsemblPlants:AT1G16970.1 GeneID:838268 KEGG:ath:AT1G16970
TAIR:At1g16970 eggNOG:NOG305318 HOGENOM:HOG000030793
InParanoid:Q9FQ08 KO:K10884 OMA:RTFNVNT PhylomeDB:Q9FQ08
ProtClustDB:CLSN2687836 Genevestigator:Q9FQ08 Gene3D:1.10.1600.10
Gene3D:2.40.290.10 InterPro:IPR005161 InterPro:IPR016194
PANTHER:PTHR12604:SF2 Pfam:PF03731 SUPFAM:SSF100939
TIGRFAMs:TIGR00578 Uniprot:Q9FQ08
Length = 621
Score = 2247 (796.0 bits), Expect = 5.7e-233, P = 5.7e-233
Identities = 426/608 (70%), Positives = 517/608 (85%)
Query: 18 NEFYQEHEATKEYVVYLVDASPKMFSTTCPAEDQT-DETHFHIAVSCIAQSLKTQIINRL 76
N+F+QE EA+KE+VVYL+DASPKMF +TCP+E++ E+HFHIAVSCIAQSLK IINR
Sbjct: 18 NDFFQEKEASKEFVVYLIDASPKMFCSTCPSEEEDKQESHFHIAVSCIAQSLKAHIINRS 77
Query: 77 YDEVAICFFNTRKKKNLQDLNAVFVFNVAEREQLDRPTARFIKEFDHIEESFEKEIGSQY 136
DE+AICFFNTR+KKNLQDLN V+VFNV ER+ +DRPTAR IKEFD IEESF+KEIGSQ
Sbjct: 78 NDEIAICFFNTREKKNLQDLNGVYVFNVPERDSIDRPTARLIKEFDLIEESFDKEIGSQT 137
Query: 137 GIVSGSRENSLYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIKGAAKNDMTRTTM 196
GIVS SRENSLY+ALWVAQ LLRKGS KTADKR+ LFTNEDDPFGS++ + K DMTRTT+
Sbjct: 138 GIVSDSRENSLYSALWVAQALLRKGSLKTADKRMFLFTNEDDPFGSMRISVKEDMTRTTL 197
Query: 197 QRAKDAQDLGISIELLPLSPPDEEFKVSHFYADMIGLEGDDLALFMPSAGQKLEDMKDQL 256
QRAKDAQDLGISIELLPLS PD++F ++ FY D+IGL D+L FMPS GQKLEDMKDQL
Sbjct: 198 QRAKDAQDLGISIELLPLSQPDKQFNITLFYKDLIGLNSDELTEFMPSVGQKLEDMKDQL 257
Query: 257 RKRMFSKRIVKRISFIIANGLSIELNTYALIRPTVPGAITWLDSVTNHPLKTERSFICAD 316
+KR+ +KRI KRI+F+I +GLSIELN YAL+RP +PG+ITWLDS TN P+K ERS+IC D
Sbjct: 258 KKRVLAKRIAKRITFVICDGLSIELNGYALLRPAIPGSITWLDSTTNLPVKVERSYICTD 317
Query: 317 TGALMQEPAKRFQPYKGENIKFSVQELSEIKRVSTGHLRLHGFKPLSYLKDYHNLRPSTF 376
TGA+MQ+P +R QPYK +NI F+V+ELS++KR+STGHLRL GFKPLS LKDYHNL+PSTF
Sbjct: 318 TGAIMQDPIQRIQPYKNQNIMFTVEELSQVKRISTGHLRLLGFKPLSCLKDYHNLKPSTF 377
Query: 377 VFPSDKEVVGSTCIFIALHRSMLRLNRFAVAFYGNPSNPRLVALVAQDEIVRAGGQVEPP 436
++PSDKEV+GST FIALHRSM++L RFAVAFYG + PRLVALVAQDEI GGQVEPP
Sbjct: 378 LYPSDKEVIGSTRAFIALHRSMIQLERFAVAFYGGTTPPRLVALVAQDEIESDGGQVEPP 437
Query: 437 GMHMIYLPYSDDIRPVEELHSDTD-AVPRASDDEVKKAAALMKRIDLKDFSVCQFANPSL 495
G++MIYLPY++DIR ++ELHS A PRASDD++KKA+ALM+R++LKDFSVCQFANP+L
Sbjct: 438 GINMIYLPYANDIRDIDELHSKPGVAAPRASDDQLKKASALMRRLELKDFSVCQFANPAL 497
Query: 496 QRHYAVLQALALEEDDMPEIKDETVPDEEGMARPGVVKAVEEFKLSVYGDNYDEEGDVKV 555
QRHYA+LQA+AL+E+++ E +DET+PDEEGM RP VVKA+E+FK S+YGD+ DEE D
Sbjct: 498 QRHYAILQAIALDENELRETRDETLPDEEGMNRPAVVKAIEQFKQSIYGDDPDEESDSGA 557
Query: 556 SEASRKRKAATENAAKECANYDWADLADKGKLKEMTVQELKLYLMAHNLSTTGRKETLIS 615
E S+KRKA + K YD+ +LA GKLK++TV ELK YL A+NL +G+KE LI+
Sbjct: 558 KEKSKKRKAGDADDGK----YDYIELAKTGKLKDLTVVELKTYLTANNLLVSGKKEVLIN 613
Query: 616 RILTHMGK 623
RILTH+GK
Sbjct: 614 RILTHIGK 621
>UNIPROTKB|Q7F1M0 [details] [associations]
symbol:KU70 "ATP-dependent DNA helicase 2 subunit KU70"
species:39947 "Oryza sativa Japonica Group" [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006281 "DNA repair" evidence=IMP]
InterPro:IPR003034 InterPro:IPR005160 InterPro:IPR006164
InterPro:IPR006165 Pfam:PF02037 Pfam:PF02735 Pfam:PF03730
PIRSF:PIRSF003033 PROSITE:PS50800 SMART:SM00513 SMART:SM00559
GO:GO:0005524 GO:GO:0006281 GO:GO:0009408 Gene3D:1.10.720.30
GO:GO:0006310 GO:GO:0003690 GO:GO:0004003 GO:GO:0000723
GO:GO:0005958 GO:GO:0006303 EMBL:AP008213 EMBL:CM000144
eggNOG:NOG305318 HOGENOM:HOG000030793 KO:K10884
ProtClustDB:CLSN2687836 Gene3D:1.10.1600.10 Gene3D:2.40.290.10
InterPro:IPR005161 InterPro:IPR016194 PANTHER:PTHR12604:SF2
Pfam:PF03731 SUPFAM:SSF100939 TIGRFAMs:TIGR00578 OMA:FYKEFIT
EMBL:AP003861 EMBL:AK102066 RefSeq:NP_001059061.1 UniGene:Os.51984
ProteinModelPortal:Q7F1M0 PRIDE:Q7F1M0
EnsemblPlants:LOC_Os07g08729.1 GeneID:4342584
KEGG:dosa:Os07t0184900-01 KEGG:osa:4342584 Gramene:Q7F1M0
Uniprot:Q7F1M0
Length = 624
Score = 2170 (768.9 bits), Expect = 8.3e-225, P = 8.3e-225
Identities = 407/605 (67%), Positives = 503/605 (83%)
Query: 22 QEHEATKEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVA 81
QE EA KE VVYL+DASPKMF+ A D+ +ETHFH V+CI +LKTQII R YDEVA
Sbjct: 21 QEREANKEMVVYLIDASPKMFTPATKA-DEKEETHFHTIVNCITHALKTQIIGRSYDEVA 79
Query: 82 ICFFNTRKKKNLQDLNAVFVFNVAEREQLDRPTARFIKEFDHIEESFEKEIGSQYGIVSG 141
ICFFNT++KKNLQ+L V+V+NV ERE LDRP AR IKEF IE+SF IGS+YGI SG
Sbjct: 80 ICFFNTKEKKNLQELAGVYVYNVTEREPLDRPDARLIKEFSCIEDSFMSNIGSRYGITSG 139
Query: 142 SRENSLYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIKGAAKNDMTRTTMQRAKD 201
SREN+LYNALWVAQ LLRKGS KT KRI++FTNEDDPFG + GA K DM RTT+QRA+D
Sbjct: 140 SRENTLYNALWVAQALLRKGSVKTVSKRIVIFTNEDDPFGGLTGAVKTDMIRTTIQRARD 199
Query: 202 AQDLGISIELLPLSPPDEEFKVSHFYADMIGLEGDDLALFMPSAGQKLEDMKDQLRKRMF 261
AQDLG+SIELLPLS PDEEF +S FYAD+IGLEGD++ ++PS+G+KLEDM +QL+KRM
Sbjct: 200 AQDLGLSIELLPLSRPDEEFNMSLFYADLIGLEGDEIVDYLPSSGEKLEDMTNQLKKRMM 259
Query: 262 SKRIVKRISFIIANGLSIELNTYALIRPTVPGAITWLDSVTNHPLKTERSFICADTGALM 321
KR VK ++F I N + IE+NTYALIR T PGAITWLDS++N PLK ERSFIC DTGAL+
Sbjct: 260 KKRKVKTLAFAITNDVCIEVNTYALIRSTTPGAITWLDSISNLPLKAERSFICNDTGALI 319
Query: 322 QEPAKRFQPYKGENIKFSVQELSEIKRVSTGHLRLHGFKPLSYLKDYHNLRPSTFVFPSD 381
Q+P KRFQ Y + +KFS +ELS++KRVS+ HLRL GFKPL YLKDYHNLRPSTF++PSD
Sbjct: 320 QDPQKRFQVYNDKIVKFSTRELSDVKRVSSHHLRLLGFKPLDYLKDYHNLRPSTFIYPSD 379
Query: 382 KEVVGSTCIFIALHRSMLRLNRFAVAFYGNPSNPRLVALVAQDEIVRAGGQVEPPGMHMI 441
+++ GST +F+ALH SM RL RFA+AFYGNP+ P+LVAL+AQ+E+ AGGQ+EPPG+HMI
Sbjct: 380 EQIFGSTRVFVALHSSMRRLGRFALAFYGNPTRPQLVALIAQEEVTSAGGQIEPPGIHMI 439
Query: 442 YLPYSDDIRPVEELHSDTDAVPRASDDEVKKAAALMKRIDLKDFSVCQFANPSLQRHYAV 501
YLPYSDD+R EE+H +D PRA+D+++KKA+ L++RIDLK+FSVCQF+NP+LQRHY +
Sbjct: 440 YLPYSDDVRYPEEVHLTSDDAPRATDEQIKKASNLLRRIDLKNFSVCQFSNPALQRHYGI 499
Query: 502 LQALALEEDDMPEIKDETVPDEEGMARPGVVKAVEEFKLSVYGDNYD-EEGDVKVSEA-- 558
L+ALAL ED+MP++KDET+PDEEG+ARP VVKAVEEFK SVYG+NYD EE + ++A
Sbjct: 500 LEALALGEDEMPDVKDETLPDEEGLARPVVVKAVEEFKASVYGENYDQEEAEAAAAKAGA 559
Query: 559 SRKRKAATENAAKECANYDWADLADKGKLKEMTVQELKLYLMAHNLSTTGRKETLISRIL 618
S+KRKA T+ AA++ A ++WA+LAD GKLK+MTV +LK YL AH L +G+KE L+SRIL
Sbjct: 560 SKKRKALTDAAAEKSAAHNWAELADTGKLKDMTVVDLKSYLSAHGLPVSGKKEALVSRIL 619
Query: 619 THMGK 623
TH+GK
Sbjct: 620 THLGK 624
>UNIPROTKB|O93257 [details] [associations]
symbol:XRCC6 "X-ray repair cross-complementing protein 5"
species:9031 "Gallus gallus" [GO:0000723 "telomere maintenance"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0043564
"Ku70:Ku80 complex" evidence=ISS] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=ISS;TAS] [GO:0051575
"5'-deoxyribose-5-phosphate lyase activity" evidence=ISS]
[GO:0070419 "nonhomologous end joining complex" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281
"DNA repair" evidence=TAS] [GO:0006302 "double-strand break repair"
evidence=TAS] InterPro:IPR003034 InterPro:IPR005160
InterPro:IPR006164 InterPro:IPR006165 Pfam:PF02037 Pfam:PF02735
Pfam:PF03730 PIRSF:PIRSF003033 PROSITE:PS50800 SMART:SM00513
SMART:SM00559 GO:GO:0005524 GO:GO:0045892 GO:GO:0005694
GO:GO:0005654 GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.720.30
GO:GO:0006310 GO:GO:0004003 GO:GO:0005958 GO:GO:0006303
Reactome:REACT_115612 GO:GO:0070419 GO:GO:0051575 eggNOG:NOG305318
KO:K10884 Gene3D:1.10.1600.10 Gene3D:2.40.290.10 InterPro:IPR005161
InterPro:IPR016194 PANTHER:PTHR12604:SF2 Pfam:PF03731
SUPFAM:SSF100939 TIGRFAMs:TIGR00578 GO:GO:0043564 EMBL:AB016529
IPI:IPI00819602 RefSeq:NP_990258.1 UniGene:Gga.26690
ProteinModelPortal:O93257 SMR:O93257 STRING:O93257 PRIDE:O93257
GeneID:395767 KEGG:gga:395767 CTD:2547 HOGENOM:HOG000006588
HOVERGEN:HBG006236 InParanoid:O93257 OrthoDB:EOG451DQB
NextBio:20815835 Uniprot:O93257
Length = 632
Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
Identities = 195/596 (32%), Positives = 302/596 (50%)
Query: 28 KEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNT 87
++ +++LVDAS MF P E++ T F + + CI ++II+ D +++ F+
Sbjct: 56 RDSLIFLVDASKAMFE---PYENEEAATPFDMTMQCIRNVYTSKIISSDKDLLSVVFYGM 112
Query: 88 RKKKNLQDLNAVFVFNVAEREQLDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSL 147
KN D ++V ++LD P A+ I E D + + + + + SL
Sbjct: 113 ENNKNSADFKHIYVL-----QELDNPGAKRILELDQYRGDEGRVLFRE--TFGHNADYSL 165
Query: 148 YNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIKGAAKNDMTRTTMQRAKDAQDLGI 207
ALW L + + KRI+LFTNED+P + +AK + RT RA D +D GI
Sbjct: 166 GEALWACSNLFSDVRVRLSHKRIMLFTNEDNPHAN--DSAKAKLART---RAGDLRDTGI 220
Query: 208 SIELLPLSPPDEEFKVSHFYADMIGL-EGDDLALFMPSAGQKLEDMKDQLRKRMFSKRIV 266
++L+ L P F +S FY D+I + E +DL + P KLE + ++R + KR +
Sbjct: 221 ILDLMHLKKPGG-FDISLFYRDIINVAEDEDLGI-QPDESGKLEHLMKKVRAKETRKRAL 278
Query: 267 KRISFIIANGLSIELNTYALIRPTVPGAITWLDSVTNHPLKTERSFICADTGALM-QEPA 325
R++ + LS + Y LI+ L TN P+KT+ TG+L+
Sbjct: 279 SRLNLYLNKDLSFSVGVYNLIQKAYKPYPVKLYRETNEPVKTKTRVFNGKTGSLLLPSDT 338
Query: 326 KRFQPYKGENIKFSVQELSEIKRVSTGHLRLHGFKPLSYLKDYHNLRPSTFVFPSDKEVV 385
KR Q Y I +E E+KR + L L GFKPLS LK +H++RPS F++P + V
Sbjct: 339 KRAQTYGNRQIAMEKEETEEVKRFDSPGLFLIGFKPLSMLKQHHHIRPSQFMYPEESLVT 398
Query: 386 GSTCIFIALHRSMLRLNRFAVAFYGNPSN--PRLVALVAQDEIV-RAGGQVEPPGMHMIY 442
GST +F AL L A+ Y N PR+VAL+ Q+E V Q+ PPG H+I+
Sbjct: 399 GSTTLFNALLMKCLEKEVMALCRYIARRNTPPRIVALIPQEEEVDEQKVQIAPPGFHIIF 458
Query: 443 LPYSDDIRPVEELHSDTDAVPRASDDEVKKAAALMKRIDLKDFSVCQFANPSLQRHYAVL 502
LPY+DD R V+ T+ VP A+ ++V K +++++ K + F NP LQ+H+ L
Sbjct: 459 LPYADDKRNVDF----TEKVP-ANREQVDKMKGIIQKLRFK-YRTDSFENPVLQQHFRNL 512
Query: 503 QALALEEDDMPEIKDETVPDEEGMARPGVVKAVEEFKLSVYGDNYDEEGDVKVSEASRKR 562
+ALAL+ + + +D T+P E M+R + VEEFK VY +Y EG K ++ +
Sbjct: 513 EALALDMLEPEQAEDLTMPKTEEMSRR-LGNLVEEFKQLVYPPDYSPEG--KAAKRKQAG 569
Query: 563 KAATENAAK-ECANYDWADLADKGKLKEMTVQELKLYLMAHNLSTTGRKETLISRI 617
A E K E + G L ++TV LK + L + G+K+ LI +
Sbjct: 570 DAQAEKRPKIEISEDSLRSYVQNGTLGKLTVSALKDTCRHYGLRSGGKKQELIDAL 625
>UNIPROTKB|F1NED5 [details] [associations]
symbol:XRCC6 "X-ray repair cross-complementing protein 5"
species:9031 "Gallus gallus" [GO:0000723 "telomere maintenance"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0003691 "double-stranded telomeric DNA binding" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006303 "double-strand
break repair via nonhomologous end joining" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0010212
"response to ionizing radiation" evidence=IEA] [GO:0033151 "V(D)J
recombination" evidence=IEA] [GO:0043564 "Ku70:Ku80 complex"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0050769 "positive regulation of neurogenesis"
evidence=IEA] [GO:0051575 "5'-deoxyribose-5-phosphate lyase
activity" evidence=IEA] [GO:0070419 "nonhomologous end joining
complex" evidence=IEA] InterPro:IPR003034 InterPro:IPR005160
InterPro:IPR006164 InterPro:IPR006165 Pfam:PF02037 Pfam:PF02735
Pfam:PF03730 PIRSF:PIRSF003033 PROSITE:PS50800 SMART:SM00513
SMART:SM00559 GO:GO:0005737 GO:GO:0045892 GO:GO:0045944
GO:GO:0010212 GO:GO:0005667 GO:GO:0044212 Gene3D:1.10.720.30
GO:GO:0004003 GO:GO:0005958 GO:GO:0006303 GO:GO:0051575 OMA:RTFNVNT
Gene3D:1.10.1600.10 Gene3D:2.40.290.10 InterPro:IPR005161
InterPro:IPR016194 PANTHER:PTHR12604:SF2 Pfam:PF03731
SUPFAM:SSF100939 TIGRFAMs:TIGR00578 GeneTree:ENSGT00390000001422
GO:GO:0043564 GO:GO:0003691 IPI:IPI00819602 EMBL:AADN02006063
EMBL:AADN02006064 Ensembl:ENSGALT00000037980 ArrayExpress:F1NED5
Uniprot:F1NED5
Length = 624
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 201/602 (33%), Positives = 302/602 (50%)
Query: 28 KEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNT 87
++ +++LVDAS MF P ED+ T F + + CI ++II+ D +++ F+ T
Sbjct: 45 RDSLIFLVDASKAMFE---PYEDEEAATPFDMTMQCIRNVYTSKIISSDKDLLSVVFYGT 101
Query: 88 RKKKNLQDLNAVFVFNVAEREQLDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSL 147
KN D V+V ++LD P A+ I E D + + + + + SL
Sbjct: 102 ENNKNSADFKHVYVL-----QELDNPGAKRILELDQYRGDEGRVLFRE--TFGHNADYSL 154
Query: 148 YNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIKGAAKNDMTRTTMQRAKDAQDLGI 207
ALW L + + KRI+LFTNED+P + +AK + RT RA D +D GI
Sbjct: 155 GEALWACSNLFSDVRVRLSHKRIMLFTNEDNPHAN--DSAKAKLART---RAGDLRDTGI 209
Query: 208 SIELLPLSPPDEEFKVSHFYADMIGL-EGDDLALFMPSAGQKLEDMKDQLRKRMFSKRIV 266
++L+ L P F +S FY D+I + E +DL + P KLE + ++R + KR +
Sbjct: 210 ILDLMHLKKPGG-FDISLFYRDIINVAEDEDLGI-QPDESGKLEHLMKKVRAKETRKRAL 267
Query: 267 KRISFIIANGLSIELNTYALIRPTVPGAITWLDSVTNHPLKTERSFICADTGALM-QEPA 325
R++ + LS + Y LI+ L TN P+KT+ TG+L+
Sbjct: 268 SRLNLYLNKDLSFSVGVYNLIQKAYKPYPVKLYRETNEPVKTKTRVFNGKTGSLLLPSDT 327
Query: 326 KRFQPYKGENIKFSVQELSEIKRVSTGHLRLHGFKPLSYLKDYHNLRPSTFVFPSDKEVV 385
KR Q Y I +E E+KR + L L GFKPLS LK +H++RPS F++P + V
Sbjct: 328 KRAQTYGNRQIAMEKEETEEVKRFDSPGLFLIGFKPLSMLKQHHHIRPSQFMYPEESLVT 387
Query: 386 GSTCIFIALHRSMLRLNRFAVAFYGNPSN--PRLVALVAQDEIV-RAGGQVEPPGMHMIY 442
GST +F AL L A+ Y N PR+VAL+ Q+E V Q+ PPG H+I+
Sbjct: 388 GSTTLFNALLMKCLEKEVMALCRYIARRNTPPRIVALIPQEEEVDEQKVQIAPPGFHIIF 447
Query: 443 LPYSDDIRPVEELHSDTDAVPRASDDEVKKAAALMKRIDLKDFSVCQFANPSLQRHYAVL 502
LPY+DD R V+ T+ VP A+ ++V K +++++ K + F NP LQ+H+ L
Sbjct: 448 LPYADDKRNVDF----TEKVP-ANREQVDKMKEIIQKLRFK-YRTDSFENPVLQQHFRNL 501
Query: 503 QALALEEDDMPEIKDET------VPDEEGMARPGVVKAVEEFKLSVYGDNYDEEGDVKVS 556
+ALAL DM E + T VP E M+R + VEEFK VY +Y EG K +
Sbjct: 502 EALAL---DMLEPEQGTNVCLLPVPKTEEMSRR-LGNLVEEFKQLVYPPDYSPEG--KAA 555
Query: 557 EASRKRKAATENAAK-ECANYDWADLADKGKLKEMTVQELKLYLMAHNLSTTGRKETLIS 615
+ + A E K E + G L ++TV LK + L + G+K+ LI
Sbjct: 556 KRKQAGDAQAEKRPKIEISEDSLRSYVQNGTLGKLTVSALKDTCRHYGLRSGGKKQELID 615
Query: 616 RI 617
+
Sbjct: 616 AL 617
>ZFIN|ZDB-GENE-030131-6420 [details] [associations]
symbol:xrcc6 "X-ray repair complementing defective
repair in Chinese hamster cells 6" species:7955 "Danio rerio"
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IEA] [GO:0000723 "telomere
maintenance" evidence=IEA] [GO:0043564 "Ku70:Ku80 complex"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0010212 "response to
ionizing radiation" evidence=IMP] InterPro:IPR002035
InterPro:IPR003034 InterPro:IPR005160 InterPro:IPR006164
InterPro:IPR006165 Pfam:PF02037 Pfam:PF02735 Pfam:PF03730
PIRSF:PIRSF003033 PROSITE:PS50234 SMART:SM00327 SMART:SM00513
SMART:SM00559 ZFIN:ZDB-GENE-030131-6420 GO:GO:0003677 GO:GO:0010212
Gene3D:1.10.720.30 GO:GO:0004003 GO:GO:0005958 GO:GO:0006303
Gene3D:1.10.1600.10 Gene3D:2.40.290.10 InterPro:IPR005161
InterPro:IPR016194 PANTHER:PTHR12604:SF2 Pfam:PF03731
SUPFAM:SSF100939 TIGRFAMs:TIGR00578 HOVERGEN:HBG006236
EMBL:DQ859046 IPI:IPI01004831 UniGene:Dr.81334
ProteinModelPortal:Q06IS3 SMR:Q06IS3 STRING:Q06IS3
InParanoid:Q06IS3 Uniprot:Q06IS3
Length = 610
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 198/608 (32%), Positives = 320/608 (52%)
Query: 28 KEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNT 87
++ +V+LVDAS +MF + + ++F + + C+ ++II+ D VA+ F+ T
Sbjct: 31 RDSLVFLVDASKEMFIKG----ENGEPSNFDMTMQCVRSVYTSKIISSDRDLVALVFYGT 86
Query: 88 RKKKNLQD-LNAVFVFNVAEREQLDRPTARFIKEFDHIEESFEKEIGSQYGIVS-GSREN 145
+ KN ++ V+V++ L+ P A+ +++ D ++ +K G Q+ + GS E
Sbjct: 87 EQSKNPRNSFKHVYVYH-----DLESPGAKRVQDIDKLKG--DK--GGQFAEKTMGSGET 137
Query: 146 SLYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIKGAAKNDMTRTTMQRAKDAQDL 205
SL ALW L + + KR+++FT D+P G +AK+ RT +A D ++
Sbjct: 138 SLGEALWCCSNLYSDIKLRLSHKRLMIFTCRDEPHGG--DSAKDRQART---KAADLKET 192
Query: 206 GISIELLPLSPPDEEFKVSHFYADMIGLEGDDLALFMP-SAGQKLEDMKDQLRKRMFSKR 264
G++I+L+ LS P F VS F+ D++ D+ L + +KLED++ ++R + KR
Sbjct: 193 GVAIDLMHLSKPGG-FDVSLFFCDIVSPPEDESELGLQIEPCRKLEDLQKRVRAKELKKR 251
Query: 265 IVKRISFIIANGLSIELNTYALIRPTV-PGAITWLDSVTNHPLKTERSFICADTGA-LMQ 322
R++F + G+ + + Y L R + P A+ L N P++T+ TG L+
Sbjct: 252 AQCRLTFSLGEGVDLAVGVYVLARTAMKPSAVK-LYRDNNEPVRTKSRLFHTQTGGILLP 310
Query: 323 EPAKRFQPYKGENIKFSVQELSEIKRVSTGHLRLHGFKPLSYLKDYHNLRPSTFVFPSDK 382
KR Q Y + I E+ EIK+ L L GFKP+ LK +H+LRP+ F++P ++
Sbjct: 311 NDTKRAQVYGQKQIVMEKDEVDEIKKFDDPGLVLIGFKPIDRLKLHHHLRPALFIYPEEE 370
Query: 383 EVVGSTCIFIALHRSMLRLNRFAVAFYGNPSN--PRLVALVAQ-DEIVRAGGQVEPPGMH 439
++ GS+C+F AL N FA+ Y N PR VALV Q +E+ ++ Q PPG H
Sbjct: 371 QISGSSCMFTALLLKCCEKNVFALCKYIPRRNTPPRFVALVPQREELDQSQTQATPPGFH 430
Query: 440 MIYLPYSDDIRPVEELHSDTDAVPRASDDEVKKAAALMKRIDLKDFSVCQFANPSLQRHY 499
+IYLP++DDIR V D P ASD++V K ++ ++ K + F NP LQ+HY
Sbjct: 431 VIYLPFADDIRTV-----DPHVGPTASDEQVDKMKEIVHKLRFK-YRSDAFENPVLQQHY 484
Query: 500 AVLQALALEEDDMPEIKDETVPDEEGMA-RPGVVKAVEEFKLSVYGDNYDEEGD--VKVS 556
+ L+ALAL+ I+D T+P + M R G + V+EFK VY +Y+ EG K
Sbjct: 485 SNLEALALDMLSPEPIEDLTMPKVKMMDDRLGPL--VQEFKDLVYPRDYNPEGKPAAKRK 542
Query: 557 EASRKRKAATENAAKECANYDWADLADKGKLKEMTVQELKLYLMAHNLSTTG-RKETLIS 615
A AA + A E + + KG L ++TV LK N+ TTG +K+ LI
Sbjct: 543 PAESGGGAAEKKAKVEISEEELKIHVAKGTLGKLTVPVLKDACKQFNIRTTGTKKQELID 602
Query: 616 RILTHMGK 623
+ + K
Sbjct: 603 ALTMQLSK 610
>UNIPROTKB|F1NII5 [details] [associations]
symbol:XRCC6 "X-ray repair cross-complementing protein 5"
species:9031 "Gallus gallus" [GO:0000723 "telomere maintenance"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043564 "Ku70:Ku80 complex" evidence=IEA]
InterPro:IPR003034 InterPro:IPR005160 InterPro:IPR006164
InterPro:IPR006165 Pfam:PF02037 Pfam:PF02735 Pfam:PF03730
PIRSF:PIRSF003033 PROSITE:PS50800 SMART:SM00513 SMART:SM00559
GO:GO:0003677 Gene3D:1.10.720.30 GO:GO:0004003 GO:GO:0005958
GO:GO:0006303 Gene3D:1.10.1600.10 Gene3D:2.40.290.10
InterPro:IPR005161 InterPro:IPR016194 PANTHER:PTHR12604:SF2
Pfam:PF03731 SUPFAM:SSF100939 TIGRFAMs:TIGR00578
GeneTree:ENSGT00390000001422 EMBL:AADN02006063 EMBL:AADN02006064
IPI:IPI00600583 Ensembl:ENSGALT00000019462 ArrayExpress:F1NII5
Uniprot:F1NII5
Length = 620
Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
Identities = 193/596 (32%), Positives = 293/596 (49%)
Query: 28 KEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNT 87
++ +++LVDAS MF P ED+ T F + + CI ++II+ D +++ F+ T
Sbjct: 45 RDSLIFLVDASKAMFE---PYEDEEAATPFDMTMQCIRNVYTSKIISSDKDLLSVVFYGT 101
Query: 88 RKKKNLQDLNAVFVFNVAEREQLDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSL 147
KN D V+V ++LD P A+ I E D + + + + + SL
Sbjct: 102 ENNKNSADFKHVYVL-----QELDNPGAKRILELDQYRGDEGRVLFRE--TFGHNADYSL 154
Query: 148 YNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIKGAAKNDMTRTTMQRAKDAQDLGI 207
ALW L + + KRI+LFTNED+P + +AK + RT RA D +D GI
Sbjct: 155 GEALWACSNLFSDVRVRLSHKRIMLFTNEDNPHAN--DSAKAKLART---RAGDLRDTGI 209
Query: 208 SIELLPLSPPDEEFKVSHFYADMIGL-EGDDLALFMPSAGQKLEDMKDQLRKRMFSKRIV 266
++L+ L P F +S FY D+I + E +DL + P KLE + ++R + KR +
Sbjct: 210 ILDLMHLKKPGG-FDISLFYRDIINVAEDEDLGI-QPDESGKLEHLMKKVRAKETRKRAL 267
Query: 267 KRISFIIANGLSIELNTYALIRPTVPGAITWLDSVTNHPLKTERSFICADTGALM-QEPA 325
R++ + LS + Y LI+ L TN P+KT+ TG+L+
Sbjct: 268 SRLNLYLNKDLSFSVGVYNLIQKAYKPYPVKLYRETNEPVKTKTRVFNGKTGSLLLPSDT 327
Query: 326 KRFQPYKGENIKFSVQELSEIKRVSTGHLRLHGFKPLSYLKDYHNLRPSTFVFPSDKEVV 385
KR Q Y I +E E+KR + L L GFKPLS LK +H++RPS F++P + V
Sbjct: 328 KRAQTYGNRQIAMEKEETEEVKRFDSPGLFLIGFKPLSMLKQHHHIRPSQFMYPEESLVT 387
Query: 386 GSTCIFIALHRSMLRLNRFAVAFYGNPSN--PRLVALVAQDEIV-RAGGQVEPPGMHMIY 442
GST +F AL L A+ Y N PR+VAL+ Q+E V Q+ PPG H+I+
Sbjct: 388 GSTTLFNALLMKCLEKEVMALCRYIARRNTPPRIVALIPQEEEVDEQKVQIAPPGFHIIF 447
Query: 443 LPYSDDIRPVEELHSDTDAVPRASDDEVKKAAALMKRIDLKDFSVCQFANPSLQRHYAVL 502
LPY+DD R V+ T+ VP A+ ++V K +++++ K + F NP LQ+ +
Sbjct: 448 LPYADDKRNVDF----TEKVP-ANREQVDKMKEIIQKLRFK-YRTDSFENPLLQKQNCIG 501
Query: 503 QALALEEDDMPEIKDETVPDEEGMARPGVVKAVEEFKLSVYGDNYDEEGDVKVSEASRKR 562
Q LE ++ + VP E M+R + VEEFK VY +Y EG +
Sbjct: 502 QFAFLEGTNVCLLP---VPKTEEMSRR-LGNLVEEFKQLVYPPDYSPEGKAAKRKQGNAG 557
Query: 563 KAATENAAK-ECANYDWADLADKGKLKEMTVQELKLYLMAHNLSTTGRKETLISRI 617
A E K E + G L ++TV LK + L + G+K+ LI +
Sbjct: 558 DAQAEKRPKIEISEDSLRSYVQNGTLGKLTVSALKDTCRHYGLRSGGKKQELIDAL 613
>UNIPROTKB|E9PT85 [details] [associations]
symbol:Xrcc6 "Protein Xrcc6" species:10116 "Rattus
norvegicus" [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003691
"double-stranded telomeric DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IEA] [GO:0008022 "protein
C-terminus binding" evidence=IEA] [GO:0010212 "response to ionizing
radiation" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0043564 "Ku70:Ku80 complex" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050769 "positive regulation of neurogenesis" evidence=IEA]
[GO:0051575 "5'-deoxyribose-5-phosphate lyase activity"
evidence=IEA] [GO:0070419 "nonhomologous end joining complex"
evidence=IEA] InterPro:IPR002035 InterPro:IPR003034
InterPro:IPR005160 InterPro:IPR006164 InterPro:IPR006165
Pfam:PF02037 Pfam:PF02735 Pfam:PF03730 PIRSF:PIRSF003033
PROSITE:PS50800 SMART:SM00327 SMART:SM00513 SMART:SM00559 RGD:2643
GO:GO:0005737 GO:GO:0045892 GO:GO:0045944 GO:GO:0010212
GO:GO:0005667 GO:GO:0044212 GO:GO:0050769 Gene3D:1.10.720.30
GO:GO:0004003 GO:GO:0005958 GO:GO:0006303 GO:GO:0033151
GO:GO:0051575 Gene3D:1.10.1600.10 Gene3D:2.40.290.10
InterPro:IPR005161 InterPro:IPR016194 PANTHER:PTHR12604:SF2
Pfam:PF03731 SUPFAM:SSF100939 TIGRFAMs:TIGR00578
GeneTree:ENSGT00390000001422 GO:GO:0043564 GO:GO:0003691
IPI:IPI00207866 Ensembl:ENSRNOT00000066849 ArrayExpress:E9PT85
Uniprot:E9PT85
Length = 609
Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
Identities = 188/602 (31%), Positives = 308/602 (51%)
Query: 28 KEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNT 87
++ +++LVDAS MF + ED+ T F +++ CI ++II+ D +A+ F+ T
Sbjct: 33 RDSLIFLVDASRAMFESQ--GEDEL--TPFDMSIQCIQSVYTSKIISSDRDLLAVVFYGT 88
Query: 88 RKKKNLQDLNAVFVFNVAEREQLDRPTARFIKEFDHIE-ESFEKEIGSQYGIVSGSRENS 146
K KN + +++V + LD P A+ + E D + + +K G GS + S
Sbjct: 89 EKDKNSVNFKSIYVL-----QDLDNPGAKRVLELDRFKGQQGKKHFRDTIG--HGS-DYS 140
Query: 147 LYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIKGAAKNDMTRTTMQRAKDAQDLG 206
L LWV L K + KRI+LFTNEDDP G+ +AK RT +A D +D G
Sbjct: 141 LSEVLWVCANLFSDVQFKMSHKRIMLFTNEDDPHGN--DSAKASRART---KASDLRDTG 195
Query: 207 ISIELLPLSPPDEEFKVSHFYADMIGL-EGDDLALFMPSAGQKLEDMKDQLRKRMFSKRI 265
I ++L+ L F VS FY D+I + E +DL + + KLED+ ++R + KR+
Sbjct: 196 IFLDLMHLKKRGG-FDVSLFYRDIISIAEDEDLGVHFEESS-KLEDLLRKVRAKETKKRV 253
Query: 266 VKRISFIIANGLSIELNTYALIRPTVPGAITWLDSVTNHPLKTERSFICADTGALM-QEP 324
+ R+ F + +++ + Y L++ L TN P+KT+ +TG+L+
Sbjct: 254 LSRLKFKLGKDVALMVGVYNLVQKANKPFPVRLYRETNEPVKTKTRTFNVNTGSLLLPSD 313
Query: 325 AKRFQPYKGENIKFSVQELSEIKRVSTGHLRLHGFKPLSYLKDYHNLRPSTFVFPSDKEV 384
KR + I +E E+KR L L GFKP+ LK++H LRPS F++P + V
Sbjct: 314 TKRSLTFGTRQIVLEKEETEELKRFDEPGLILMGFKPMVMLKNHHYLRPSLFLYPEESLV 373
Query: 385 VGSTCIFIALHRSMLRLNRFAVAFYGNPSN--PRLVALVAQDEIVRAGG-QVEPPGMHMI 441
GS+ +F AL + AV Y N P VALV Q+E + QV P G ++
Sbjct: 374 NGSSTLFSALLTKCVEKEVIAVCRYTARKNVSPYFVALVPQEEELDDQNIQVTPAGFQLV 433
Query: 442 YLPYSDDIRPVEELHSDTDAVPRASDDEVKKAAALMKRIDLKDFSVCQFANPSLQRHYAV 501
+LPY+DD R V T+ V A+ +++ K A+++++ + F NP LQ+H+
Sbjct: 434 FLPYADDKRKVPF----TEKV-MANPEQIDKMKAIVQKLRFT-YRSDSFENPVLQQHFRN 487
Query: 502 LQALALEEDDMPEIKDETVPDEEGMARPGVVKAVEEFKLSVYGDNYDEEGDVKVSEASRK 561
L+ALAL+ + ++ D T+P E + + + +EFK VY Y+ EG + +A +
Sbjct: 488 LEALALDMMESEQVVDLTLPKVEAIKKR-LGSLADEFKELVYPPGYNPEGKIAKRKADNE 546
Query: 562 RKAATENAAKECANYDWADLADKGKLKEMTVQELKLYLMAHNLSTTGRKETLISRILTHM 621
+A++ E + + DL KG L ++TV L+ A+ L + +K+ L+ + H+
Sbjct: 547 G-SASKKPKVELSEEELKDLFAKGTLGKLTVPALRDICKAYGLKSGPKKQELLEALSRHL 605
Query: 622 GK 623
K
Sbjct: 606 EK 607
>UNIPROTKB|Q6AZ64 [details] [associations]
symbol:Xrcc6 "X-ray repair complementing defective repair
in Chinese hamster cells 6, isoform CRA_a" species:10116 "Rattus
norvegicus" [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0043564 "Ku70:Ku80 complex" evidence=IEA] InterPro:IPR002035
InterPro:IPR003034 InterPro:IPR005160 InterPro:IPR006164
InterPro:IPR006165 Pfam:PF02037 Pfam:PF02735 Pfam:PF03730
PIRSF:PIRSF003033 PROSITE:PS50800 SMART:SM00327 SMART:SM00513
SMART:SM00559 RGD:2643 GO:GO:0003677 Gene3D:1.10.720.30
GO:GO:0004003 GO:GO:0005958 GO:GO:0006303 EMBL:CH473950
eggNOG:NOG305318 KO:K10884 Gene3D:1.10.1600.10 Gene3D:2.40.290.10
InterPro:IPR005161 InterPro:IPR016194 PANTHER:PTHR12604:SF2
Pfam:PF03731 SUPFAM:SSF100939 TIGRFAMs:TIGR00578
GeneTree:ENSGT00390000001422 CTD:2547 HOGENOM:HOG000006588
HOVERGEN:HBG006236 OrthoDB:EOG451DQB EMBL:BC078718 IPI:IPI00949953
RefSeq:NP_620780.2 UniGene:Rn.161996 SMR:Q6AZ64 IntAct:Q6AZ64
STRING:Q6AZ64 Ensembl:ENSRNOT00000008819 GeneID:25019
KEGG:rno:25019 InParanoid:Q6AZ64 NextBio:605111
Genevestigator:Q6AZ64 Uniprot:Q6AZ64
Length = 608
Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
Identities = 188/602 (31%), Positives = 308/602 (51%)
Query: 28 KEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNT 87
++ +++LVDAS MF + ED+ T F +++ CI ++II+ D +A+ F+ T
Sbjct: 33 RDSLIFLVDASRAMFESQ--GEDEL--TPFDMSIQCIQSVYTSKIISSDRDLLAVVFYGT 88
Query: 88 RKKKNLQDLNAVFVFNVAEREQLDRPTARFIKEFDHIE-ESFEKEIGSQYGIVSGSRENS 146
K KN + +++V + LD P A+ + E D + + +K G GS + S
Sbjct: 89 EKDKNSVNFKSIYVL-----QDLDNPGAKRVLELDRFKGQQGKKHFRDTIG--HGS-DYS 140
Query: 147 LYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIKGAAKNDMTRTTMQRAKDAQDLG 206
L LWV L K + KRI+LFTNEDDP G+ +AK RT +A D +D G
Sbjct: 141 LSEVLWVCANLFSDVQFKMSHKRIMLFTNEDDPHGN--DSAKASRART---KASDLRDTG 195
Query: 207 ISIELLPLSPPDEEFKVSHFYADMIGL-EGDDLALFMPSAGQKLEDMKDQLRKRMFSKRI 265
I ++L+ L F VS FY D+I + E +DL + + KLED+ ++R + KR+
Sbjct: 196 IFLDLMHLKKRGG-FDVSLFYRDIISIAEDEDLGVHFEESS-KLEDLLRKVRAKETKKRV 253
Query: 266 VKRISFIIANGLSIELNTYALIRPTVPGAITWLDSVTNHPLKTERSFICADTGALM-QEP 324
+ R+ F + +++ + Y L++ L TN P+KT+ +TG+L+
Sbjct: 254 LSRLKFKLGKDVALMVGVYNLVQKANKPFPVRLYRETNEPVKTKTRTFNVNTGSLLLPSD 313
Query: 325 AKRFQPYKGENIKFSVQELSEIKRVSTGHLRLHGFKPLSYLKDYHNLRPSTFVFPSDKEV 384
KR + I +E E+KR L L GFKP+ LK++H LRPS F++P + V
Sbjct: 314 TKRSLTFGTRQIVLEKEETEELKRFDEPGLILMGFKPMVMLKNHHYLRPSLFLYPEESLV 373
Query: 385 VGSTCIFIALHRSMLRLNRFAVAFYGNPSN--PRLVALVAQDEIVRAGG-QVEPPGMHMI 441
GS+ +F AL + AV Y N P VALV Q+E + QV P G ++
Sbjct: 374 NGSSTLFSALLTKCVEKEVIAVCRYTARKNVSPYFVALVPQEEELDDQNIQVTPAGFQLV 433
Query: 442 YLPYSDDIRPVEELHSDTDAVPRASDDEVKKAAALMKRIDLKDFSVCQFANPSLQRHYAV 501
+LPY+DD R V T+ V A+ +++ K A+++++ + F NP LQ+H+
Sbjct: 434 FLPYADDKRKVPF----TEKV-MANPEQIDKMKAIVQKLRFT-YRSDSFENPVLQQHFRN 487
Query: 502 LQALALEEDDMPEIKDETVPDEEGMARPGVVKAVEEFKLSVYGDNYDEEGDVKVSEASRK 561
L+ALAL+ + ++ D T+P E + + + +EFK VY Y+ EG + +A +
Sbjct: 488 LEALALDMMESEQVVDLTLPKVEAIKKR-LGSLADEFKELVYPPGYNPEGKIAKRKADNE 546
Query: 562 RKAATENAAKECANYDWADLADKGKLKEMTVQELKLYLMAHNLSTTGRKETLISRILTHM 621
+A++ E + + DL KG L ++TV L+ A+ L + +K+ L+ + H+
Sbjct: 547 G-SASKKPKVELSEEELKDLFAKGTLGKLTVPALRDICKAYGLKSGPKKQELLEALSRHL 605
Query: 622 GK 623
K
Sbjct: 606 EK 607
>MGI|MGI:95606 [details] [associations]
symbol:Xrcc6 "X-ray repair complementing defective repair in
Chinese hamster cells 6" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000723 "telomere
maintenance" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0003690 "double-stranded
DNA binding" evidence=ISO] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005667 "transcription factor complex"
evidence=ISO] [GO:0005694 "chromosome" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=ISO;IMP] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IMP] [GO:0008022 "protein
C-terminus binding" evidence=ISO] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0010212 "response to ionizing radiation"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016829 "lyase activity" evidence=IEA] [GO:0033151 "V(D)J
recombination" evidence=IMP] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043234 "protein complex" evidence=ISO]
[GO:0043564 "Ku70:Ku80 complex" evidence=ISO] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0050769 "positive regulation of neurogenesis" evidence=IMP]
[GO:0051575 "5'-deoxyribose-5-phosphate lyase activity"
evidence=ISO] [GO:0070419 "nonhomologous end joining complex"
evidence=ISO] [GO:0071475 "cellular hyperosmotic salinity response"
evidence=ISO] [GO:0071481 "cellular response to X-ray"
evidence=ISO] InterPro:IPR002035 InterPro:IPR003034
InterPro:IPR005160 InterPro:IPR006164 InterPro:IPR006165
Pfam:PF02037 Pfam:PF02735 Pfam:PF03730 PIRSF:PIRSF003033
PROSITE:PS50800 SMART:SM00327 SMART:SM00513 SMART:SM00559
MGI:MGI:95606 GO:GO:0005524 GO:GO:0005737 GO:GO:0045892
GO:GO:0005694 GO:GO:0045944 GO:GO:0006351 GO:GO:0010212
GO:GO:0005667 GO:GO:0044212 GO:GO:0050769 Gene3D:1.10.720.30
GO:GO:0004003 GO:GO:0005958 GO:GO:0006303 GO:GO:0070419
GO:GO:0033151 GO:GO:0051575 eggNOG:NOG305318 KO:K10884
Gene3D:1.10.1600.10 Gene3D:2.40.290.10 InterPro:IPR005161
InterPro:IPR016194 PANTHER:PTHR12604:SF2 Pfam:PF03731
SUPFAM:SSF100939 TIGRFAMs:TIGR00578 GeneTree:ENSGT00390000001422
GO:GO:0043564 GO:GO:0003691 CTD:2547 HOVERGEN:HBG006236
OrthoDB:EOG451DQB EMBL:U50378 EMBL:U50367 EMBL:U50368 EMBL:U50369
EMBL:U50370 EMBL:U50371 EMBL:U50372 EMBL:U50373 EMBL:U50374
EMBL:U50375 EMBL:U50376 EMBL:U50377 EMBL:U34878 EMBL:AB010282
EMBL:AF483500 EMBL:AF483501 EMBL:AK143570 EMBL:AK146392
EMBL:AK146394 EMBL:AK146396 EMBL:BC031422 EMBL:Z14157 EMBL:M38700
IPI:IPI00132424 PIR:A43534 PIR:S25149 RefSeq:NP_034377.2
UniGene:Mm.288809 ProteinModelPortal:P23475 SMR:P23475
IntAct:P23475 MINT:MINT-2568472 STRING:P23475 PhosphoSite:P23475
PaxDb:P23475 PRIDE:P23475 Ensembl:ENSMUST00000069530
Ensembl:ENSMUST00000100399 GeneID:14375 KEGG:mmu:14375
UCSC:uc007wxy.1 InParanoid:P23475 NextBio:285869 Bgee:P23475
Genevestigator:P23475 GermOnline:ENSMUSG00000022471 Uniprot:P23475
Length = 608
Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
Identities = 193/603 (32%), Positives = 303/603 (50%)
Query: 28 KEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNT 87
++ +++LVDAS MF + ED+ T F +++ CI ++II+ D +A+ F+ T
Sbjct: 33 RDSLIFLVDASRAMFESQ--GEDEL--TPFDMSIQCIQSVYTSKIISSDRDLLAVVFYGT 88
Query: 88 RKKKNLQDLNAVFVFNVAEREQLDRPTARFIKEFDHIE-ESFEKEIGSQYGIVSGSRENS 146
K KN + ++V + LD P A+ + E D + + +K G GS + S
Sbjct: 89 EKDKNSVNFKNIYVL-----QDLDNPGAKRVLELDQFKGQQGKKHFRDTVG--HGS-DYS 140
Query: 147 LYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIKGAAKNDMTRTTMQRAKDAQDLG 206
L LWV L K + KRI+LFTNEDDP G + +AK RT +A D +D G
Sbjct: 141 LSEVLWVCANLFSDVQLKMSHKRIMLFTNEDDPHG--RDSAKASRART---KASDLRDTG 195
Query: 207 ISIELLPLSPPDEEFKVSHFYADMIGL-EGDDLALFMPSAGQKLEDMKDQLRKRMFSKRI 265
I ++L+ L P F VS FY D+I E +DL + + KLED+ ++R + KR+
Sbjct: 196 IFLDLMHLKKPGG-FDVSVFYRDIITTAEDEDLGVHFEESS-KLEDLLRKVRAKETKKRV 253
Query: 266 VKRISFIIANGLSIELNTYALIRPTVPGAITWLDSVTNHPLKTERSFICADTGALM-QEP 324
+ R+ F + + + + Y L++ L TN P+KT+ +TG+L+
Sbjct: 254 LSRLKFKLGEDVVLMVGIYNLVQKANKPFPVRLYRETNEPVKTKTRTFNVNTGSLLLPSD 313
Query: 325 AKRFQPYKGENIKFSVQELSEIKRVSTGHLRLHGFKPLSYLKDYHNLRPSTFVFPSDKEV 384
KR Y I +E E+KR L L GFKP LK H LRPS FV+P + V
Sbjct: 314 TKRSLTYGTRQIVLEKEETEELKRFDEPGLILMGFKPTVMLKKQHYLRPSLFVYPEESLV 373
Query: 385 VGSTCIFIALHRSMLRLNRFAVAFYGNPSN--PRLVALVAQDEIVRAGG-QVEPPGMHMI 441
GS+ +F AL + AV Y N P VALV Q+E + QV P G ++
Sbjct: 374 SGSSTLFSALLTKCVEKKVIAVCRYTPRKNVSPYFVALVPQEEELDDQNIQVTPGGFQLV 433
Query: 442 YLPYSDDIRPVEELHSDTDAVPRASDDEVKKAAALMKRIDLKDFSVCQFANPSLQRHYAV 501
+LPY+DD R V T+ V A+ +++ K A+++++ + F NP LQ+H+
Sbjct: 434 FLPYADDKRKVPF----TEKVT-ANQEQIDKMKAIVQKLRFT-YRSDSFENPVLQQHFRN 487
Query: 502 LQALALEEDDMPEIKDETVPDEEGMARPGVVKAVEEFKLSVYGDNYDEEGDVKVSEASRK 561
L+ALAL+ + ++ D T+P E + + + +EFK VY Y+ EG KV++ +
Sbjct: 488 LEALALDMMESEQVVDLTLPKVEAIKKR-LGSLADEFKELVYPPGYNPEG--KVAKRKQD 544
Query: 562 RKAATENAAK-ECANYDWADLADKGKLKEMTVQELKLYLMAHNLSTTGRKETLISRILTH 620
+ +T K E + + KG L ++TV LK AH L + +K+ L+ ++ H
Sbjct: 545 DEGSTSKKPKVELSEEELKAHFRKGTLGKLTVPTLKDICKAHGLKSGPKKQELLDALIRH 604
Query: 621 MGK 623
+ K
Sbjct: 605 LEK 607
>RGD|2643 [details] [associations]
symbol:Xrcc6 "X-ray repair complementing defective repair in
Chinese hamster cells 6" species:10116 "Rattus norvegicus"
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005667 "transcription factor complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0006302 "double-strand break
repair" evidence=ISO;TAS] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=ISO] [GO:0006974 "response to DNA
damage stimulus" evidence=ISO] [GO:0007420 "brain development"
evidence=IEP] [GO:0008022 "protein C-terminus binding" evidence=ISO]
[GO:0010212 "response to ionizing radiation" evidence=ISO]
[GO:0033151 "V(D)J recombination" evidence=ISO] [GO:0043234 "protein
complex" evidence=IDA] [GO:0043564 "Ku70:Ku80 complex" evidence=ISO]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0050769 "positive regulation of neurogenesis"
evidence=ISO] [GO:0051575 "5'-deoxyribose-5-phosphate lyase activity"
evidence=ISO] [GO:0070419 "nonhomologous end joining complex"
evidence=ISO] [GO:0071475 "cellular hyperosmotic salinity response"
evidence=IDA] [GO:0071481 "cellular response to X-ray" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0003691
"double-stranded telomeric DNA binding" evidence=ISO]
InterPro:IPR002035 InterPro:IPR003034 InterPro:IPR005160
InterPro:IPR006164 InterPro:IPR006165 Pfam:PF02037 Pfam:PF02735
Pfam:PF03730 PIRSF:PIRSF003033 PROSITE:PS50800 SMART:SM00327
SMART:SM00513 SMART:SM00559 RGD:2643 GO:GO:0005737 GO:GO:0043234
GO:GO:0007420 GO:GO:0005730 GO:GO:0003677 Gene3D:1.10.720.30
GO:GO:0004003 GO:GO:0006302 GO:GO:0005958 GO:GO:0006303 GO:GO:0071475
HSSP:P12956 Gene3D:1.10.1600.10 Gene3D:2.40.290.10 InterPro:IPR005161
InterPro:IPR016194 PANTHER:PTHR12604:SF2 Pfam:PF03731
SUPFAM:SSF100939 TIGRFAMs:TIGR00578 GO:GO:0071481
HOGENOM:HOG000006588 HOVERGEN:HBG006236 IPI:IPI00207866
UniGene:Rn.161996 EMBL:AB066102 ProteinModelPortal:Q8VIB1 SMR:Q8VIB1
STRING:Q8VIB1 InParanoid:Q8VIB1 Genevestigator:Q8VIB1 Uniprot:Q8VIB1
Length = 609
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 188/602 (31%), Positives = 307/602 (50%)
Query: 28 KEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNT 87
++ +++LVDAS MF + ED+ T F +++ CI ++II+ D +A+ F+ T
Sbjct: 33 RDSLIFLVDASRAMFESQ--GEDEL--TPFDMSIQCIQSVYTSKIISSDRDLLAVVFYGT 88
Query: 88 RKKKNLQDLNAVFVFNVAEREQLDRPTARFIKEFDHIE-ESFEKEIGSQYGIVSGSRENS 146
K KN + +++V + LD P A+ + E D + + +K G GS + S
Sbjct: 89 EKDKNSVNFKSIYVL-----QDLDNPGAKRVLELDRFKGQQGKKHFRDTIG--HGS-DYS 140
Query: 147 LYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIKGAAKNDMTRTTMQRAKDAQDLG 206
L LWV L K + KRI+LFTNEDDP G+ +AK RT +A D +D G
Sbjct: 141 LSEVLWVCANLFSDVQFKMSHKRIMLFTNEDDPHGN--DSAKASRART---KASDLRDTG 195
Query: 207 ISIELLPLSPPDEEFKVSHFYADMIGL-EGDDLALFMPSAGQKLEDMKDQLRKRMFSKRI 265
I ++L+ L F VS FY D+I + E +DL + + KLED+ ++R + KR+
Sbjct: 196 IFLDLMHLKKRGG-FDVSLFYRDIISIAEDEDLGVHFEESS-KLEDLLRKVRAKETKKRV 253
Query: 266 VKRISFIIANGLSIELNTYALIRPTVPGAITWLDSVTNHPLKTERSFICADTGALM-QEP 324
+ R+ F + +++ + Y L++ L TN P+KT+ +TG+L+
Sbjct: 254 LSRLKFKLGKDVALMVGVYNLVQKANKPFPVRLYRETNEPVKTKTRTFNVNTGSLLLPSD 313
Query: 325 AKRFQPYKGENIKFSVQELSEIKRVSTGHLRLHGFKPLSYLKDYHNLRPSTFVFPSDKEV 384
KR + I +E E+KR L L GFKP+ LK++H LRPS F++P + V
Sbjct: 314 TKRSLTFGTRQIVLEKEETEELKRFDEPGLILMGFKPMVMLKNHHYLRPSLFLYPEESLV 373
Query: 385 VGSTCIFIALHRSMLRLNRFAVAFYGNPSN--PRLVALVAQDEIVRAGG-QVEPPGMHMI 441
GS+ +F AL + AV Y N P VALV Q+E + QV P G ++
Sbjct: 374 NGSSTLFSALLTKCVEKEVIAVCRYTARKNVSPYFVALVPQEEELDDQNIQVTPAGFQLV 433
Query: 442 YLPYSDDIRPVEELHSDTDAVPRASDDEVKKAAALMKRIDLKDFSVCQFANPSLQRHYAV 501
+LPY+DD R V T+ V A+ +++ K A ++++ + F NP LQ+H+
Sbjct: 434 FLPYADDKRKVPF----TEKV-MANPEQIDKMKAHVQKLRFT-YRSDSFENPVLQQHFRN 487
Query: 502 LQALALEEDDMPEIKDETVPDEEGMARPGVVKAVEEFKLSVYGDNYDEEGDVKVSEASRK 561
L+ALAL+ + ++ D T+P E + + + +EFK VY Y+ EG + +A +
Sbjct: 488 LEALALDMMESEQVVDLTLPKVEAIKKR-LGSLADEFKELVYPPGYNPEGKIAKRKADNE 546
Query: 562 RKAATENAAKECANYDWADLADKGKLKEMTVQELKLYLMAHNLSTTGRKETLISRILTHM 621
+A++ E + + DL KG L ++TV L+ A+ L + +K+ L+ + H+
Sbjct: 547 G-SASKKPKVELSEEELKDLFAKGTLGKLTVPALRDICKAYGLKSGPKKQELLEALSRHL 605
Query: 622 GK 623
K
Sbjct: 606 EK 607
>UNIPROTKB|P12956 [details] [associations]
symbol:XRCC6 "X-ray repair cross-complementing protein 6"
species:9606 "Homo sapiens" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0010212 "response
to ionizing radiation" evidence=IEA] [GO:0033151 "V(D)J
recombination" evidence=IEA] [GO:0050769 "positive regulation of
neurogenesis" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003677 "DNA binding" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005667 "transcription factor complex"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IMP;IDA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0070419
"nonhomologous end joining complex" evidence=IDA] [GO:0043564
"Ku70:Ku80 complex" evidence=IDA] [GO:0051575
"5'-deoxyribose-5-phosphate lyase activity" evidence=IMP]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IMP;TAS] [GO:0016020 "membrane" evidence=TAS]
[GO:0003690 "double-stranded DNA binding" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0006266 "DNA ligation" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0006302 "double-strand break repair"
evidence=TAS] [GO:0016032 "viral reproduction" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0003691
"double-stranded telomeric DNA binding" evidence=IDA] [GO:0000783
"nuclear telomere cap complex" evidence=TAS] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] Reactome:REACT_216
InterPro:IPR003034 InterPro:IPR005160 InterPro:IPR006164
InterPro:IPR006165 Pfam:PF02037 Pfam:PF02735 Pfam:PF03730
PIRSF:PIRSF003033 PROSITE:PS50800 SMART:SM00513 SMART:SM00559
GO:GO:0005524 GO:GO:0005737 Reactome:REACT_116125 GO:GO:0045892
Pathway_Interaction_DB:telomerasepathway GO:GO:0016032
GO:GO:0016020 GO:GO:0045944 GO:GO:0006351 GO:GO:0010212
GO:GO:0005667 GO:GO:0044212 GO:GO:0000783 GO:GO:0050769
Gene3D:1.10.720.30 GO:GO:0003690
Pathway_Interaction_DB:hdac_classiii_pathway GO:GO:0004003
Pathway_Interaction_DB:ar_pathway GO:GO:0006266 GO:GO:0000723
Pathway_Interaction_DB:bard1pathway GO:GO:0005958 GO:GO:0006303
EMBL:Z83840 GO:GO:0070419 GO:GO:0033151 GO:GO:0051575
eggNOG:NOG305318 KO:K10884 OMA:RTFNVNT Gene3D:1.10.1600.10
Gene3D:2.40.290.10 InterPro:IPR005161 InterPro:IPR016194
PANTHER:PTHR12604:SF2 Pfam:PF03731 SUPFAM:SSF100939
TIGRFAMs:TIGR00578 GO:GO:0043564 PDB:1JEQ PDB:1JEY PDBsum:1JEQ
PDBsum:1JEY CTD:2547 HOGENOM:HOG000006588 HOVERGEN:HBG006236
OrthoDB:EOG451DQB EMBL:J04607 EMBL:J04611 EMBL:M32865 EMBL:S38729
EMBL:CR542219 EMBL:AY870329 EMBL:BC008343 EMBL:BC010034
EMBL:BC012154 EMBL:BC018259 EMBL:BC072449 IPI:IPI00644712
PIR:A30299 RefSeq:NP_001460.1 UniGene:Hs.292493 PDB:1JJR PDB:3RZX
PDBsum:1JJR PDBsum:3RZX ProteinModelPortal:P12956 SMR:P12956
DIP:DIP-24188N IntAct:P12956 MINT:MINT-1416738 STRING:P12956
PhosphoSite:P12956 DMDM:125729 SWISS-2DPAGE:P12956 PaxDb:P12956
PRIDE:P12956 DNASU:2547 Ensembl:ENST00000359308
Ensembl:ENST00000360079 Ensembl:ENST00000405878 GeneID:2547
KEGG:hsa:2547 UCSC:uc003bao.1 GeneCards:GC22P042017 HGNC:HGNC:4055
HPA:CAB004254 MIM:152690 neXtProt:NX_P12956 PharmGKB:PA28467
InParanoid:P12956 EvolutionaryTrace:P12956 GenomeRNAi:2547
NextBio:10043 PMAP-CutDB:P12956 ArrayExpress:P12956 Bgee:P12956
CleanEx:HS_XRCC6 Genevestigator:P12956 GermOnline:ENSG00000196419
Uniprot:P12956
Length = 609
Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
Identities = 193/600 (32%), Positives = 306/600 (51%)
Query: 28 KEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNT 87
++ +++LVDAS MF + +ED+ T F +++ CI ++II+ D +A+ F+ T
Sbjct: 35 RDSLIFLVDASKAMFESQ--SEDEL--TPFDMSIQCIQSVYISKIISSDRDLLAVVFYGT 90
Query: 88 RKKKNLQDLNAVFVFNVAEREQLDRPTARFIKEFDHIE-ESFEKEIGSQYGIVSGSRENS 146
K KN + ++V ++LD P A+ I E D + + +K G GS + S
Sbjct: 91 EKDKNSVNFKNIYVL-----QELDNPGAKRILELDQFKGQQGQKRFQDMMG--HGS-DYS 142
Query: 147 LYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIKGAAKNDMTRTTMQRAKDAQDLG 206
L LWV L K + KRI+LFTNED+P G+ +AK RT +A D +D G
Sbjct: 143 LSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGN--DSAKASRART---KAGDLRDTG 197
Query: 207 ISIELLPLSPPDEEFKVSHFYADMIGL-EGDDLALFMPSAGQKLEDMKDQLRKRMFSKRI 265
I ++L+ L P F +S FY D+I + E +DL + + KLED+ ++R + KR
Sbjct: 198 IFLDLMHLKKPGG-FDISLFYRDIISIAEDEDLRVHFEESS-KLEDLLRKVRAKETRKRA 255
Query: 266 VKRISFIIANGLSIELNTYALIRPTVPGAITWLDSVTNHPLKTE-RSFICADTGALMQEP 324
+ R+ + + I + Y L++ + L TN P+KT+ R+F + G L+
Sbjct: 256 LSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVKTKTRTFNTSTGGLLLPSD 315
Query: 325 AKRFQPYKGENIKFSVQELSEIKRVSTGHLRLHGFKPLSYLKDYHNLRPSTFVFPSDKEV 384
KR Q Y I +E E+KR L L GFKPL LK +H LRPS FV+P + V
Sbjct: 316 TKRSQIYGSRQIILEKEETEELKRFDDPGLMLMGFKPLVLLKKHHYLRPSLFVYPEESLV 375
Query: 385 VGSTCIFIALHRSMLRLNRFAVAFYGNPSN--PRLVALVAQDEIVRAGG-QVEPPGMHMI 441
+GS+ +F AL L A+ Y N P VALV Q+E + QV PPG ++
Sbjct: 376 IGSSTLFSALLIKCLEKEVAALCRYTPRRNIPPYFVALVPQEEELDDQKIQVTPPGFQLV 435
Query: 442 YLPYSDDIRPVEELHSDTDAVPRASDDEVKKAAALMKRIDLKDFSVCQFANPSLQRHYAV 501
+LP++DD R + T+ + A+ ++V K A+++++ + F NP LQ+H+
Sbjct: 436 FLPFADDKRKMPF----TEKI-MATPEQVGKMKAIVEKLRFT-YRSDSFENPVLQQHFRN 489
Query: 502 LQALALEEDDMPEIKDETVPDEEGMARPGVVKAVEEFKLSVYGDNYDEEGDVKVSEASRK 561
L+ALAL+ + + D T+P E M + + V+EFK VY +Y+ EG KV++
Sbjct: 490 LEALALDLMEPEQAVDLTLPKVEAMNKR-LGSLVDEFKELVYPPDYNPEG--KVTKRKHD 546
Query: 562 RKAATENAAK-ECANYDWADLADKGKLKEMTVQELKLYLMAHNLSTTGRKETLISRILTH 620
+ + K E + + KG L + TV LK A+ L + +K+ L+ + H
Sbjct: 547 NEGSGSKRPKVEYSEEELKTHISKGTLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKH 606
>UNIPROTKB|E2RRK6 [details] [associations]
symbol:XRCC6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0070419 "nonhomologous end joining complex"
evidence=IEA] [GO:0051575 "5'-deoxyribose-5-phosphate lyase
activity" evidence=IEA] [GO:0050769 "positive regulation of
neurogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0043564 "Ku70:Ku80 complex"
evidence=IEA] [GO:0033151 "V(D)J recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0003691
"double-stranded telomeric DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0000723 "telomere
maintenance" evidence=IEA] InterPro:IPR002035 InterPro:IPR003034
InterPro:IPR005160 InterPro:IPR006164 InterPro:IPR006165
Pfam:PF02037 Pfam:PF02735 Pfam:PF03730 PIRSF:PIRSF003033
SMART:SM00327 SMART:SM00513 SMART:SM00559 GO:GO:0005737
GO:GO:0045892 GO:GO:0045944 GO:GO:0010212 GO:GO:0005667
GO:GO:0044212 GO:GO:0050769 Gene3D:1.10.720.30 GO:GO:0004003
GO:GO:0005958 GO:GO:0006303 GO:GO:0033151 GO:GO:0051575 KO:K10884
OMA:RTFNVNT Gene3D:1.10.1600.10 Gene3D:2.40.290.10
InterPro:IPR005161 InterPro:IPR016194 PANTHER:PTHR12604:SF2
Pfam:PF03731 SUPFAM:SSF100939 TIGRFAMs:TIGR00578
GeneTree:ENSGT00390000001422 GO:GO:0043564 GO:GO:0003691 CTD:2547
EMBL:AAEX03007292 EMBL:AAEX03007293 RefSeq:XP_531714.1
ProteinModelPortal:E2RRK6 Ensembl:ENSCAFT00000001601 GeneID:474485
KEGG:cfa:474485 NextBio:20850490 Uniprot:E2RRK6
Length = 608
Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
Identities = 186/604 (30%), Positives = 302/604 (50%)
Query: 28 KEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNT 87
++ +++LVD S MF + + + + T F +++ CI +II+ D +A+ F+ T
Sbjct: 33 RDSLIFLVDGSRAMFES----QGEVELTPFDMSIQCIQSVYTNKIISSNQDLLAVVFYGT 88
Query: 88 RKKKNLQDLNAVFVFNVAEREQLDRPTARFIKEFDHIEESFEKEIGSQY--GIVSGSREN 145
K KN + ++V ++LD P A+ + E D F+ E G ++ ++ +
Sbjct: 89 EKDKNSVNFKNIYVL-----QELDNPGAKRVLELDQ----FKGERGKKHFQDLIGHGSDY 139
Query: 146 SLYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIKGAAKNDMTRTTMQRAKDAQDL 205
SL LWV L K + KRI+LFTNEDDP G+ +AK RT +A D +D
Sbjct: 140 SLSEVLWVCANLFSDVQVKMSHKRIMLFTNEDDPHGN--DSAKASRART---KAGDLRDT 194
Query: 206 GISIELLPLSPPDEEFKVSHFYADMIGL-EGDDLALFMPSAGQKLEDMKDQLRKRMFSKR 264
GI ++L+ L F +S FY D+I + E +DL + + KLED+ ++R + KR
Sbjct: 195 GIFLDLMHLKKRGG-FDISLFYRDIISIAEDEDLGVHFEESS-KLEDLLRKVRAKETRKR 252
Query: 265 IVKRISFIIANGLSIELNTYALIRPTVPGAITWLDSVTNHPLKTERSFICADTGALM-QE 323
++ R+ ++ ++ + Y +++ V A L TN P+K++ +TG+L+
Sbjct: 253 VLCRLKLKLSKDTALTVGIYNMVQKAVRPAPVRLYRETNEPVKSKTRTFNVNTGSLLLPS 312
Query: 324 PAKRFQPYKGENIKFSVQELSEIKRVSTGHLRLHGFKPLSYLKDYHNLRPSTFVFPSDKE 383
KR Q Y I +E E+KR L L GFKPL LK +H LRPS FV+P +
Sbjct: 313 DTKRSQNYGNRQIVLEKEETEELKRFDEPGLILIGFKPLIMLKKHHYLRPSLFVYPEESL 372
Query: 384 VVGSTCIFIALHRSMLRLNRFAVAFYGNPSN--PRLVALVAQDEIVRAGG-QVEPPGMHM 440
V GS+ +FIAL L AV Y N P VAL+ Q+E + QV PPG +
Sbjct: 373 VNGSSTLFIALLTKCLEKEVMAVCRYTPRRNIPPYFVALLPQEEELDDQKIQVTPPGFQL 432
Query: 441 IYLPYSDDIRPVEELHSDTDAVPRASDDEVKKAAALMKRIDLKDFSVCQFANPSLQRHYA 500
++LPY+DD R V T+ V A+ +++ K A+++++ ++ F NP LQ+H+
Sbjct: 433 VFLPYADDKRKVPF----TEKV-MANPEQIDKMKAIVQKLRF-NYRSDSFENPVLQQHFR 486
Query: 501 VLQALALEEDDMPEIKDETVPDEEGMARPGVVKAVEEFKLSVYGDNYDEEGDVKVSEASR 560
L+ LAL+ + + +D T+P E + + + V EFK VY +Y EG K + +
Sbjct: 487 NLEVLALDLMEPEQAEDLTLPKIEAIDKR-LGSLVNEFKELVYPPDYSPEG--KAPKRRQ 543
Query: 561 KRKAATENAAK-ECANYDWADLADKGKLKEMTVQELKLYLMAHNLSTTGRKETLISRILT 619
+ K E + + +KG L ++TV LK L +K+ L+ +
Sbjct: 544 DDEGLGSKRPKMELSEEELRAHVNKGTLGKLTVPMLKEACRVCGLKGGLKKQELLDILTK 603
Query: 620 HMGK 623
H K
Sbjct: 604 HFQK 607
>UNIPROTKB|F1SRE0 [details] [associations]
symbol:XRCC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070419 "nonhomologous end joining complex"
evidence=IEA] [GO:0051575 "5'-deoxyribose-5-phosphate lyase
activity" evidence=IEA] [GO:0050769 "positive regulation of
neurogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0043564 "Ku70:Ku80 complex"
evidence=IEA] [GO:0033151 "V(D)J recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0003691
"double-stranded telomeric DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0000723 "telomere
maintenance" evidence=IEA] InterPro:IPR002035 InterPro:IPR003034
InterPro:IPR005160 InterPro:IPR006164 InterPro:IPR006165
Pfam:PF02735 Pfam:PF03730 PIRSF:PIRSF003033 SMART:SM00327
SMART:SM00513 SMART:SM00559 GO:GO:0005737 GO:GO:0045892
GO:GO:0045944 GO:GO:0010212 GO:GO:0005667 GO:GO:0044212
GO:GO:0050769 Gene3D:1.10.720.30 GO:GO:0004003 GO:GO:0005958
GO:GO:0006303 GO:GO:0033151 GO:GO:0051575 OMA:RTFNVNT
Gene3D:1.10.1600.10 Gene3D:2.40.290.10 InterPro:IPR005161
InterPro:IPR016194 PANTHER:PTHR12604:SF2 Pfam:PF03731
SUPFAM:SSF100939 TIGRFAMs:TIGR00578 GeneTree:ENSGT00390000001422
GO:GO:0043564 GO:GO:0003691 EMBL:CU633382
Ensembl:ENSSSCT00000000065 Uniprot:F1SRE0
Length = 606
Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
Identities = 178/581 (30%), Positives = 297/581 (51%)
Query: 48 AEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAER 107
++D+ + T F +++ CI +II+ D +A+ F+ T+K KN + ++V
Sbjct: 49 SQDEDELTPFDMSIQCIQSVYTNKIISSDRDLLAVVFYGTKKDKNSVNFKNIYVL----- 103
Query: 108 EQLDRPTARFIKEFDHIEESFEKEIGSQY--GIVSGSRENSLYNALWVAQGLLRKGSSKT 165
++LD P A+ ++E D F+ + G++Y ++ + SL LWV L K
Sbjct: 104 QELDSPGAKRVQELDR----FKGQEGTKYFQDLLGHGSDYSLSEVLWVCANLFSDVQVKM 159
Query: 166 ADKRILLFTNEDDPFGSIKGAAKNDMTRTTMQRAKDAQDLGISIELLPLSPPDEEFKVSH 225
+ KRI+LFTN+DDP G+ +AK RT +A D +D GI ++L+ L P F +S
Sbjct: 160 SHKRIMLFTNDDDPHGN--DSAKASRART---KAGDLRDTGIFLDLMHLKKPGG-FDISL 213
Query: 226 FYADMIGL-EGDDLALFMPSAGQKLEDMKDQLRKRMFSKRIVKRISFIIANGLSIELNTY 284
FY D+I + E +D+ + + KLED+ ++R + KR++ R+ ++ +++ + Y
Sbjct: 214 FYRDIISVAEDEDIGVHFEES-HKLEDLLRKVRAKETRKRVLHRLKLKLSKDVALTVGIY 272
Query: 285 ALIRPTVPGAITWLDSVTNHPLKTERSFICADTGALM-QEPAKRFQPYKGENIKFSVQEL 343
L++ L TN P+KT+ +TG+L+ KR Q Y I +E
Sbjct: 273 NLVQKAYKPFPVRLYRETNEPVKTKTRTFNVNTGSLLLPSDTKRSQTYGNRQIVLEKEE- 331
Query: 344 SEIKRVSTGHLRLHGFKPLSYLKDYHNLRPSTFVFPSDKEVVGSTCIFIALHRSMLRLNR 403
+E+ R L L GFKPL LK +H +RPS FV+P + V GS+ +F AL L
Sbjct: 332 TEMLRFDEPGLILIGFKPLGMLKRHHYVRPSLFVYPEESLVNGSSTLFTALLTKCLEKEV 391
Query: 404 FAVAFYGNPSN--PRLVALVAQDE-IVRAGGQVEPPGMHMIYLPYSDDIRPVEELHSDTD 460
AV Y N P VAL+ Q+E + QV PPG +++LPY+DD R V T+
Sbjct: 392 MAVCRYTPRKNLPPYFVALMPQEEELDDQKVQVTPPGFQLVFLPYADDKRKVPF----TE 447
Query: 461 AVPRASDDEVKKAAALMKRIDLKDFSVCQFANPSLQRHYAVLQALALEEDDMPEIKDETV 520
+ A+ ++V K A+++++ K + F NP LQ+H+ ++ALAL+ + + D T+
Sbjct: 448 KI-MANPEQVDKMKAIVQKLRFK-YRSDSFENPVLQQHFRNMEALALDLMEPEQAVDLTL 505
Query: 521 PDEEGMARPGVVKAVEEFKLSVYGDNYDEEGDVKVSEASRKRKAATENAAK-ECANYDWA 579
P E MA+ + V+EFK VY +Y+ EG K + + ++ K E + +
Sbjct: 506 PKAEAMAKR-LGSLVDEFKELVYPPDYNPEG--KAPKRKQDNESCGSKRPKVELSEEELK 562
Query: 580 DLADKGKLKEMTVQELKLYLMAHNLSTTGRKETLISRILTH 620
+G L ++TV LK H + +K+ L+ + H
Sbjct: 563 AHISEGTLGKLTVPTLKEACRVHGVKGGMKKQELLDALTKH 603
Score = 236 (88.1 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 61/192 (31%), Positives = 104/192 (54%)
Query: 28 KEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNT 87
++ +++LVDAS MF + +D+ + T F +++ CI +II+ D +A+ F+ T
Sbjct: 33 RDSLIFLVDASRAMFES----QDEDELTPFDMSIQCIQSVYTNKIISSDRDLLAVVFYGT 88
Query: 88 RKKKNLQDLNAVFVFNVAEREQLDRPTARFIKEFDHIEESFEKEIGSQY--GIVSGSREN 145
+K KN + ++V ++LD P A+ ++E D F+ + G++Y ++ +
Sbjct: 89 KKDKNSVNFKNIYVL-----QELDSPGAKRVQELDR----FKGQEGTKYFQDLLGHGSDY 139
Query: 146 SLYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIKGAAKNDMTRTTMQRAKDAQDL 205
SL LWV L K + KRI+LFTN+DDP G+ +AK RT +A D +D
Sbjct: 140 SLSEVLWVCANLFSDVQVKMSHKRIMLFTNDDDPHGN--DSAKASRART---KAGDLRDT 194
Query: 206 GISIELLPLSPP 217
GI ++L+ L P
Sbjct: 195 GIFLDLMHLKKP 206
>UNIPROTKB|F1MMD5 [details] [associations]
symbol:XRCC6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070419 "nonhomologous end joining complex"
evidence=IEA] [GO:0051575 "5'-deoxyribose-5-phosphate lyase
activity" evidence=IEA] [GO:0050769 "positive regulation of
neurogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0043564 "Ku70:Ku80 complex"
evidence=IEA] [GO:0033151 "V(D)J recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0003691
"double-stranded telomeric DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0000723 "telomere
maintenance" evidence=IEA] InterPro:IPR003034 InterPro:IPR005160
InterPro:IPR006164 InterPro:IPR006165 Pfam:PF02037 Pfam:PF02735
Pfam:PF03730 PIRSF:PIRSF003033 PROSITE:PS50800 SMART:SM00513
SMART:SM00559 GO:GO:0005737 GO:GO:0045892 GO:GO:0045944
GO:GO:0010212 GO:GO:0005667 GO:GO:0044212 GO:GO:0050769
Gene3D:1.10.720.30 GO:GO:0004003 GO:GO:0005958 GO:GO:0006303
GO:GO:0033151 GO:GO:0051575 KO:K10884 OMA:RTFNVNT
Gene3D:1.10.1600.10 Gene3D:2.40.290.10 InterPro:IPR005161
InterPro:IPR016194 PANTHER:PTHR12604:SF2 Pfam:PF03731
SUPFAM:SSF100939 TIGRFAMs:TIGR00578 GeneTree:ENSGT00390000001422
GO:GO:0043564 GO:GO:0003691 CTD:2547 EMBL:DAAA02014736
EMBL:DAAA02014735 IPI:IPI00700355 RefSeq:NP_001179175.1
UniGene:Bt.8019 Ensembl:ENSBTAT00000008020 GeneID:510132
KEGG:bta:510132 NextBio:20869291 Uniprot:F1MMD5
Length = 612
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 181/582 (31%), Positives = 290/582 (49%)
Query: 48 AEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAER 107
++D+ + T F +++ CI +II+ D +A+ F+ T+K KN + ++V
Sbjct: 54 SQDEDELTPFDMSIQCIRSVYTNKIISSNRDLLAVVFYGTKKDKNSVNFKNIYVL----- 108
Query: 108 EQLDRPTARFIKEFDHIE-ESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRKGSSKTA 166
++LD P + ++E D + + +K Q G GS + SL LWV L K +
Sbjct: 109 QELDNPGVKRVQELDKFKGQEGKKYFEDQIG--HGS-DYSLSEVLWVCANLFSDVQFKMS 165
Query: 167 DKRILLFTNEDDPFGSIKGAAKNDMTRTTMQRAKDAQDLGISIELLPLSPPDEEFKVSHF 226
KRI+LFTNEDDP G +AK RT +A D +D GI ++L+ L F S F
Sbjct: 166 HKRIMLFTNEDDPHGD--DSAKASRART---KAGDLRDTGIFLDLMHLKKRGG-FDTSLF 219
Query: 227 YADMIGLEGDDLALFMPSAGQKLEDMKDQLRKRMFSKRIVKRISFIIANGLSIELNTYAL 286
Y D+I E +D+ + + KLED+ ++R + KR++ R+ + +++ + Y +
Sbjct: 220 YRDVIIAENEDIGIHFEESS-KLEDLLRKVRAKETRKRVLSRLKLKLNKDVTLTVGIYNM 278
Query: 287 IRPTVPGAITWLDSVTNHPLKTERSFICADTGALM-QEPAKRFQPYKGENIKFSVQELSE 345
++ L TN P+KT+ +TG+L+ KR Q Y I +E E
Sbjct: 279 VQKAYRPPPVRLYRETNEPVKTKTRTFNVNTGSLLLPSDTKRSQTYSHRQIVLEKEETEE 338
Query: 346 IKRVSTGHLRLHGFKPLSYLKDYHNLRPSTFVFPSDKEVVGSTCIFIALHRSMLRLNRFA 405
+KR L GFKPL LK +H LR S FV+P + + GS+ +F AL L A
Sbjct: 339 LKRFDEPGFILIGFKPLMMLKKHHYLRHSLFVYPEESLINGSSTLFSALLTKCLEKEVMA 398
Query: 406 VAFYGNPSN--PRLVALVAQDEIVRAGG-QVEPPGMHMIYLPYSDDIRPVEELHSDTDAV 462
V Y N P VALV Q+E + QV PPG +++LPY+DD R V T+ V
Sbjct: 399 VCRYTPRRNSPPCFVALVPQEEELDDQKIQVAPPGFQLVFLPYADDKRKVPF----TEKV 454
Query: 463 PRASDDEVKKAAALMKRIDLKDFSVCQFANPSLQRHYAVLQALALEEDDMPEIKDETVPD 522
A+ ++V K A+++++ K + F NP LQ+H+ ++ALAL+ + + D T+P
Sbjct: 455 -MANPEQVDKMKAIVQKLRFK-YRSDSFENPVLQQHFRNMEALALDLMEPEQAVDLTLPK 512
Query: 523 EEGMARPGVVKAVEEFKLSVYGDNYDEEGDVKVSEASRKRKAATENAAK-ECANYDWADL 581
E M + + V+EFK VY +Y+ EG KV++ + ++ K E + +
Sbjct: 513 TEVMDKR-LGSLVDEFKELVYPPDYNPEG--KVTKRKKDDESYGSKRPKVELSEEELKAH 569
Query: 582 ADKGKLKEMTVQELKLYLMAHNLSTTGRKETLISRILTHMGK 623
KG L ++TV LK + L +K+ L+ + H K
Sbjct: 570 VSKGTLGKLTVPALKEACRMYGLKGGLKKQELLDVLTEHFQK 611
Score = 229 (85.7 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 62/188 (32%), Positives = 100/188 (53%)
Query: 28 KEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNT 87
++ +++LVDAS MF + +D+ + T F +++ CI +II+ D +A+ F+ T
Sbjct: 38 RDSLIFLVDASRAMFES----QDEDELTPFDMSIQCIRSVYTNKIISSNRDLLAVVFYGT 93
Query: 88 RKKKNLQDLNAVFVFNVAEREQLDRPTARFIKEFDHIE-ESFEKEIGSQYGIVSGSRENS 146
+K KN + ++V ++LD P + ++E D + + +K Q G GS + S
Sbjct: 94 KKDKNSVNFKNIYVL-----QELDNPGVKRVQELDKFKGQEGKKYFEDQIG--HGS-DYS 145
Query: 147 LYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIKGAAKNDMTRTTMQRAKDAQDLG 206
L LWV L K + KRI+LFTNEDDP G +AK RT +A D +D G
Sbjct: 146 LSEVLWVCANLFSDVQFKMSHKRIMLFTNEDDPHGD--DSAKASRART---KAGDLRDTG 200
Query: 207 ISIELLPL 214
I ++L+ L
Sbjct: 201 IFLDLMHL 208
>UNIPROTKB|J9NUS9 [details] [associations]
symbol:XRCC6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043564 "Ku70:Ku80 complex" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] InterPro:IPR002035
InterPro:IPR005160 InterPro:IPR006164 InterPro:IPR006165
Pfam:PF02735 Pfam:PF03730 PIRSF:PIRSF003033 SMART:SM00327
SMART:SM00559 GO:GO:0003677 GO:GO:0004003 GO:GO:0005958
GO:GO:0006303 Gene3D:1.10.1600.10 Gene3D:2.40.290.10
InterPro:IPR005161 InterPro:IPR016194 PANTHER:PTHR12604:SF2
Pfam:PF03731 SUPFAM:SSF100939 TIGRFAMs:TIGR00578
GeneTree:ENSGT00390000001422 EMBL:AAEX03007292 EMBL:AAEX03007293
Ensembl:ENSCAFT00000048401 Uniprot:J9NUS9
Length = 592
Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
Identities = 171/531 (32%), Positives = 275/531 (51%)
Query: 28 KEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNT 87
++ +++LVD S MF + + + + T F +++ CI +II+ D +A+ F+ T
Sbjct: 33 RDSLIFLVDGSRAMFES----QGEVELTPFDMSIQCIQSVYTNKIISSNQDLLAVVFYGT 88
Query: 88 RKKKNLQDLNAVFVFNVAEREQLDRPTARFIKEFDHIEESFEKEIGSQY--GIVSGSREN 145
K KN + ++V ++LD P A+ + E D F+ E G ++ ++ +
Sbjct: 89 EKDKNSVNFKNIYVL-----QELDNPGAKRVLELDQ----FKGERGKKHFQDLIGHGSDY 139
Query: 146 SLYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIKGAAKNDMTRTTMQRAKDAQDL 205
SL LWV L K + KRI+LFTNEDDP G+ +AK RT +A D +D
Sbjct: 140 SLSEVLWVCANLFSDVQVKMSHKRIMLFTNEDDPHGN--DSAKASRART---KAGDLRDT 194
Query: 206 GISIELLPLSPPDEEFKVSHFYADMIGL-EGDDLALFMPSAGQKLEDMKDQLRKRMFSKR 264
GI ++L+ L F +S FY D+I + E +DL + + KLED+ ++R + KR
Sbjct: 195 GIFLDLMHLKKRGG-FDISLFYRDIISIAEDEDLGVHFEESS-KLEDLLRKVRAKETRKR 252
Query: 265 IVKRISFIIANGLSIELNTYALIRPTVPGAITWLDSVTNHPLKTERSFICADTGALM-QE 323
++ R+ ++ ++ + Y +++ V A L TN P+K++ +TG+L+
Sbjct: 253 VLCRLKLKLSKDTALTVGIYNMVQKAVRPAPVRLYRETNEPVKSKTRTFNVNTGSLLLPS 312
Query: 324 PAKRFQPYKGENIKFSVQELSEIKRVSTGHLRLHGFKPLSYLKDYHNLRPSTFVFPSDKE 383
KR Q Y I +E E+KR L L GFKPL LK +H LRPS FV+P +
Sbjct: 313 DTKRSQNYGNRQIVLEKEETEELKRFDEPGLILIGFKPLIMLKKHHYLRPSLFVYPEESL 372
Query: 384 VVGSTCIFIALHRSMLRLNRFAVAFYGNPSN--PRLVALVAQDEIVRAGG-QVEPPGMHM 440
V GS+ +FIAL L AV Y N P VAL+ Q+E + QV PPG +
Sbjct: 373 VNGSSTLFIALLTKCLEKEVMAVCRYTPRRNIPPYFVALLPQEEELDDQKIQVTPPGFQL 432
Query: 441 IYLPYSDDIRPVEELHSDTDAVPRASDDEVKKAAALMKRIDLKDFSVCQFANPSLQRHYA 500
++LPY+DD R V T+ V A+ +++ K A+++++ ++ F NP LQ+H+
Sbjct: 433 VFLPYADDKRKVPF----TEKV-MANPEQIDKMKAIVQKLRF-NYRSDSFENPVLQQHFR 486
Query: 501 VLQALALEEDDMPEIKDETVPDEEGMARPGVVKAVEEFKLSVYGDNYDEEG 551
L+ LAL+ + + +D T+P E + + + V EFK VY +Y EG
Sbjct: 487 NLEVLALDLMEPEQAEDLTLPKIEAIDKR-LGSLVNEFKELVYPPDYSPEG 536
>UNIPROTKB|B1AHC9 [details] [associations]
symbol:XRCC6 "X-ray repair cross-complementing protein 6"
species:9606 "Homo sapiens" [GO:0000723 "telomere maintenance"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043564 "Ku70:Ku80 complex" evidence=IEA]
InterPro:IPR003034 InterPro:IPR005160 InterPro:IPR006164
InterPro:IPR006165 Pfam:PF02037 Pfam:PF02735 Pfam:PF03730
PIRSF:PIRSF003033 PROSITE:PS50800 SMART:SM00513 SMART:SM00559
GO:GO:0003677 Gene3D:1.10.720.30 GO:GO:0004003 GO:GO:0005958
GO:GO:0006303 EMBL:Z83840 Gene3D:1.10.1600.10 Gene3D:2.40.290.10
InterPro:IPR005161 InterPro:IPR016194 PANTHER:PTHR12604:SF2
Pfam:PF03731 SUPFAM:SSF100939 TIGRFAMs:TIGR00578
HOGENOM:HOG000006588 HOVERGEN:HBG006236 UniGene:Hs.292493
HGNC:HGNC:4055 IPI:IPI00893062 SMR:B1AHC9 STRING:B1AHC9
Ensembl:ENST00000405506 UCSC:uc011apc.1 Uniprot:B1AHC9
Length = 559
Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
Identities = 182/565 (32%), Positives = 284/565 (50%)
Query: 63 CIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAEREQLDRPTARFIKEFD 122
CI ++II+ D +A+ F+ T K KN + ++V ++LD P A+ I E D
Sbjct: 16 CIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVL-----QELDNPGAKRILELD 70
Query: 123 HIE-ESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFG 181
+ + +K G GS + SL LWV L K + KRI+LFTNED+P G
Sbjct: 71 QFKGQQGQKRFQDMMG--HGS-DYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHG 127
Query: 182 SIKGAAKNDMTRTTMQRAKDAQDLGISIELLPLSPPDEEFKVSHFYADMIGL-EGDDLAL 240
+ +AK RT +A D +D GI ++L+ L P F +S FY D+I + E +DL +
Sbjct: 128 N--DSAKASRART---KAGDLRDTGIFLDLMHLKKPGG-FDISLFYRDIISIAEDEDLRV 181
Query: 241 FMPSAGQKLEDMKDQLRKRMFSKRIVKRISFIIANGLSIELNTYALIRPTVPGAITWLDS 300
+ KLED+ ++R + KR + R+ + + I + Y L++ + L
Sbjct: 182 HFEESS-KLEDLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYR 240
Query: 301 VTNHPLKTE-RSFICADTGALMQEPAKRFQPYKGENIKFSVQELSEIKRVSTGHLRLHGF 359
TN P+KT+ R+F + G L+ KR Q Y I +E E+KR L L GF
Sbjct: 241 ETNEPVKTKTRTFNTSTGGLLLPSDTKRSQIYGSRQIILEKEETEELKRFDDPGLMLMGF 300
Query: 360 KPLSYLKDYHNLRPSTFVFPSDKEVVGSTCIFIALHRSMLRLNRFAVAFYGNPSN--PRL 417
KPL LK +H LRPS FV+P + V+GS+ +F AL L A+ Y N P
Sbjct: 301 KPLVLLKKHHYLRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVAALCRYTPRRNIPPYF 360
Query: 418 VALVAQDEIVRAGG-QVEPPGMHMIYLPYSDDIRPVEELHSDTDAVPRASDDEVKKAAAL 476
VALV Q+E + QV PPG +++LP++DD R + T+ + A+ ++V K A+
Sbjct: 361 VALVPQEEELDDQKIQVTPPGFQLVFLPFADDKRKMPF----TEKI-MATPEQVGKMKAI 415
Query: 477 MKRIDLKDFSVCQFANPSLQRHYAVLQALALEEDDMPEIKDETVPDEEGMARPGVVKAVE 536
++++ + F NP LQ+H+ L+ALAL+ + + D T+P E M + + V+
Sbjct: 416 VEKLRFT-YRSDSFENPVLQQHFRNLEALALDLMEPEQAVDLTLPKVEAMNKR-LGSLVD 473
Query: 537 EFKLSVYGDNYDEEGDVKVSEASRKRKAATENAAK-ECANYDWADLADKGKLKEMTVQEL 595
EFK VY +Y+ EG KV++ + + K E + + KG L + TV L
Sbjct: 474 EFKELVYPPDYNPEG--KVTKRKHDNEGSGSKRPKVEYSEEELKTHISKGTLGKFTVPML 531
Query: 596 KLYLMAHNLSTTGRKETLISRILTH 620
K A+ L + +K+ L+ + H
Sbjct: 532 KEACRAYGLKSGLKKQELLEALTKH 556
>UNIPROTKB|B1AHC8 [details] [associations]
symbol:XRCC6 "X-ray repair complementing defective repair
in Chinese hamster cells 6 (Ku autoantigen, 70kDa), isoform CRA_b"
species:9606 "Homo sapiens" [GO:0000723 "telomere maintenance"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043564 "Ku70:Ku80 complex" evidence=IEA]
InterPro:IPR003034 InterPro:IPR005160 InterPro:IPR006164
InterPro:IPR006165 Pfam:PF02037 Pfam:PF02735 Pfam:PF03730
PIRSF:PIRSF003033 PROSITE:PS50800 SMART:SM00513 SMART:SM00559
GO:GO:0003677 EMBL:CH471095 Gene3D:1.10.720.30 GO:GO:0004003
GO:GO:0005958 GO:GO:0006303 EMBL:Z83840 KO:K10884
Gene3D:1.10.1600.10 Gene3D:2.40.290.10 InterPro:IPR005161
InterPro:IPR016194 PANTHER:PTHR12604:SF2 Pfam:PF03731
SUPFAM:SSF100939 TIGRFAMs:TIGR00578 CTD:2547 HOGENOM:HOG000006588
HOVERGEN:HBG006236 RefSeq:NP_001460.1 UniGene:Hs.292493 DNASU:2547
GeneID:2547 KEGG:hsa:2547 HGNC:HGNC:4055 PharmGKB:PA28467
GenomeRNAi:2547 NextBio:10043 EMBL:AK055786 IPI:IPI00889791
SMR:B1AHC8 STRING:B1AHC8 Ensembl:ENST00000402580 UCSC:uc003bap.1
Uniprot:B1AHC8
Length = 568
Score = 576 (207.8 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
Identities = 170/520 (32%), Positives = 263/520 (50%)
Query: 108 EQLDRPTARFIKEFDHIE-ESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRKGSSKTA 166
++LD P A+ I E D + + +K G GS + SL LWV L K +
Sbjct: 65 QELDNPGAKRILELDQFKGQQGQKRFQDMMG--HGS-DYSLSEVLWVCANLFSDVQFKMS 121
Query: 167 DKRILLFTNEDDPFGSIKGAAKNDMTRTTMQRAKDAQDLGISIELLPLSPPDEEFKVSHF 226
KRI+LFTNED+P G+ +AK RT +A D +D GI ++L+ L P F +S F
Sbjct: 122 HKRIMLFTNEDNPHGN--DSAKASRART---KAGDLRDTGIFLDLMHLKKPGG-FDISLF 175
Query: 227 YADMIGL-EGDDLALFMPSAGQKLEDMKDQLRKRMFSKRIVKRISFIIANGLSIELNTYA 285
Y D+I + E +DL + + KLED+ ++R + KR + R+ + + I + Y
Sbjct: 176 YRDIISIAEDEDLRVHFEESS-KLEDLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYN 234
Query: 286 LIRPTVPGAITWLDSVTNHPLKTE-RSFICADTGALMQEPAKRFQPYKGENIKFSVQELS 344
L++ + L TN P+KT+ R+F + G L+ KR Q Y I +E
Sbjct: 235 LVQKALKPPPIKLYRETNEPVKTKTRTFNTSTGGLLLPSDTKRSQIYGSRQIILEKEETE 294
Query: 345 EIKRVSTGHLRLHGFKPLSYLKDYHNLRPSTFVFPSDKEVVGSTCIFIALHRSMLRLNRF 404
E+KR L L GFKPL LK +H LRPS FV+P + V+GS+ +F AL L
Sbjct: 295 ELKRFDDPGLMLMGFKPLVLLKKHHYLRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVA 354
Query: 405 AVAFYGNPSN--PRLVALVAQDEIVRAGG-QVEPPGMHMIYLPYSDDIRPVEELHSDTDA 461
A+ Y N P VALV Q+E + QV PPG +++LP++DD R + T+
Sbjct: 355 ALCRYTPRRNIPPYFVALVPQEEELDDQKIQVTPPGFQLVFLPFADDKRKMPF----TEK 410
Query: 462 VPRASDDEVKKAAALMKRIDLKDFSVCQFANPSLQRHYAVLQALALEEDDMPEIKDETVP 521
+ A+ ++V K A+++++ + F NP LQ+H+ L+ALAL+ + + D T+P
Sbjct: 411 I-MATPEQVGKMKAIVEKLRFT-YRSDSFENPVLQQHFRNLEALALDLMEPEQAVDLTLP 468
Query: 522 DEEGMARPGVVKAVEEFKLSVYGDNYDEEGDVKVSEASRKRKAATENAAK-ECANYDWAD 580
E M + + V+EFK VY +Y+ EG KV++ + + K E + +
Sbjct: 469 KVEAMNKR-LGSLVDEFKELVYPPDYNPEG--KVTKRKHDNEGSGSKRPKVEYSEEELKT 525
Query: 581 LADKGKLKEMTVQELKLYLMAHNLSTTGRKETLISRILTH 620
KG L + TV LK A+ L + +K+ L+ + H
Sbjct: 526 HISKGTLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKH 565
Score = 44 (20.5 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 28 KEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAV 61
++ +++LVDAS MF + +ED+ T F +++
Sbjct: 35 RDSLIFLVDASKAMFESQ--SEDEL--TPFDMSI 64
>DICTYBASE|DDB_G0286069 [details] [associations]
symbol:ku70 "DNA-dependent protein kinase (DNAPK)
subunit" species:44689 "Dictyostelium discoideum" [GO:0005958
"DNA-dependent protein kinase-DNA ligase 4 complex" evidence=ISS]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IEA;ISS] [GO:0006266 "DNA
ligation" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA;ISS]
[GO:0003690 "double-stranded DNA binding" evidence=ISS] [GO:0043564
"Ku70:Ku80 complex" evidence=IEA] [GO:0042162 "telomeric DNA
binding" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000723 "telomere
maintenance" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR002035
InterPro:IPR003034 InterPro:IPR005160 InterPro:IPR006164
InterPro:IPR006165 Pfam:PF02735 Pfam:PF03730 PROSITE:PS50800
SMART:SM00327 dictyBase:DDB_G0286069 GO:GO:0005524 GO:GO:0045893
GenomeReviews:CM000153_GR Gene3D:1.10.720.30 GO:GO:0006310
GO:GO:0003690 EMBL:AAFI02000085 GO:GO:0004003 InterPro:IPR019406
Pfam:PF10283 GO:GO:0006266 GO:GO:0005958 GO:GO:0006303 HSSP:P12956
eggNOG:NOG305318 KO:K10884 Gene3D:1.10.1600.10 Gene3D:2.40.290.10
InterPro:IPR005161 InterPro:IPR016194 PANTHER:PTHR12604:SF2
Pfam:PF03731 SUPFAM:SSF100939 TIGRFAMs:TIGR00578 RefSeq:XP_637925.1
ProteinModelPortal:Q54MA9 STRING:Q54MA9 EnsemblProtists:DDB0232001
GeneID:8625436 KEGG:ddi:DDB_G0286069 InParanoid:Q54MA9 OMA:IKHSQFI
Uniprot:Q54MA9
Length = 909
Score = 381 (139.2 bits), Expect = 2.4e-54, Sum P(2) = 2.4e-54
Identities = 119/431 (27%), Positives = 210/431 (48%)
Query: 21 YQEHEATKEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEV 80
YQ + ++ +++L+DAS MF P E+ +E FH AV C+ Q++ +II D +
Sbjct: 63 YQNPYSYRDCIIFLIDASKAMFE---PNEN--NEIPFHNAVKCLIQTITDKIITSDSDLI 117
Query: 81 AICFFNTRKKKNLQDLNAVFVFNVAEREQLDRPTARFIKEFDHIEESFEKEIGSQYGIVS 140
+CF+NT KKKN+ D ++V +++ + D ++E +G+ G +
Sbjct: 118 GVCFYNTNKKKNINDFENIYV--LSDLDIPDPKIILTLEEMLENSNFTTNGLGNCQGEMP 175
Query: 141 GSRE----NSLYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIKGAAKNDMTRTTM 196
+++++ + + + S+ KRI LFTNED+P + + +N + +
Sbjct: 176 FCDALWTCSTMFSNIKQSGSSSGENSNNNNFKRIFLFTNEDNP-NAYNDSIRNSSIQRSK 234
Query: 197 QRAKDAQDLGISIELLPLSPPDEEFKVSHFYADMIGLEGDDLALFMPS--AGQKLEDMKD 254
+ D ++ I + + S D+ F S FY ++ ++ L A K D++
Sbjct: 235 DLS-DL-NIQIELFSMNKSVNDK-FDFSLFYQHILIFADEENYLDPTQFDASSKFSDLRF 291
Query: 255 QLRKRMFSKRIVKRISFII---------ANGLS----IELNTYALIRPTVPGAITWLDSV 301
+L+++ F KR + ++ I +N L I Y L + T LD
Sbjct: 292 KLKRKEFKKRSLGKLPLYIGNLNNNNNNSNSLDSQVIISTQLYNLFSHAHKSSPTLLDPK 351
Query: 302 TNHPLKTERSFICADTGA-LMQEPAKRFQPYKGENIKFSVQELSEIKRVSTGHLRLHGFK 360
TN P+K +CA+T A L+ K Y GE + F+ E+ IK + L GFK
Sbjct: 352 TNLPVKQLIKNVCANTQATLLPSQIKLCYHYGGEPVIFTKDEMQTIKSIDRIGFTLLGFK 411
Query: 361 PLSYLKDYHNLRPSTFVFPSDKEVVGSTCIFIALHRSMLRLNRFAVAFYG--NPSNPRLV 418
PL +K YH+++ S F+FP D+ + GS F AL ML+ + A+ + + S+PR+V
Sbjct: 412 PLENIKPYHSIKHSQFIFPDDQSIKGSVLAFNALVEQMLKSGKAAICRFTPRSSSSPRMV 471
Query: 419 ALVAQDEIVRA 429
AL+ Q+EI+++
Sbjct: 472 ALIPQEEILQS 482
Score = 255 (94.8 bits), Expect = 2.4e-54, Sum P(2) = 2.4e-54
Identities = 60/188 (31%), Positives = 97/188 (51%)
Query: 432 QVEPPGMHMIYLPYSDDIRPVEELHSDTDAVPRASDDEVKKAAALMKRIDLKDFSVCQFA 491
Q+ P GMH+IYLP++DDIR + +D + + + KA ++K + +K F +F
Sbjct: 547 QIRPRGMHVIYLPFADDIRYPNNIGVKSDGL-EIKQENIDKAKNIIKMMKIK-FDEKKFV 604
Query: 492 NPSLQRHYAVLQALALEEDDMPEIKDETVPDEEGMARPGVVKAVEEFKLSVYGDNYDEEG 551
NP LQ+HYA LQA+ALE D + E D PD + + + V+ ++F ++ Y
Sbjct: 605 NPGLQKHYASLQAIALERDKVEETVDNIQPDRKLIEK--VIDTTQDFSDGIFPVGYASTV 662
Query: 552 DVKVSEASRKRKAATENAAKECANYDWADLADKGKLKEMTVQELKLYLMAHNL--STTGR 609
S S A K+ + DW D+ G++ ++TV +LK +L N+ S+ +
Sbjct: 663 SSATSSTSSS-SAKRLRDGKDLSTMDWPDMVKSGEIIKLTVDDLKSFLSNQNIKPSSKAK 721
Query: 610 KETLISRI 617
K LI I
Sbjct: 722 KADLIDLI 729
Score = 52 (23.4 bits), Expect = 5.0e-33, Sum P(2) = 5.0e-33
Identities = 32/155 (20%), Positives = 58/155 (37%)
Query: 429 AGGQVEPPGMHMIYLPYSDDIRPVEELHSDTDAVPRASDDEVKKAAALMKRIDLKDFSVC 488
+GG +P +H++ D P+ SD DD+ + K++ S
Sbjct: 734 SGGNFKPDKLHLL----KKDSPPL----SDNTITTNGGDDDDNNRPS--KKVKSTSTSTT 783
Query: 489 QFANPSLQRHYAVLQALALEEDDMPE----IKDETVPDEE--GMARPGVVKAVE-EFKLS 541
N S ++ A + + P+ +KD+ + G ++ V + +FK S
Sbjct: 784 ASKNTSSSSP-PLVSAATMNKKAPPKKSFSVKDKNSSNNSSGGSSKANVNDEFDIDFKNS 842
Query: 542 VYGDNYDEEGDVKVSEASRKRKAATENAAKECANY 576
D+ D E DV + T AA + N+
Sbjct: 843 DQDDDTDNESDVNNKATTSTTTITTTTAAPKKNNF 877
>UNIPROTKB|F5H1I8 [details] [associations]
symbol:XRCC6 "X-ray repair cross-complementing protein 6"
species:9606 "Homo sapiens" [GO:0000723 "telomere maintenance"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0043564
"Ku70:Ku80 complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IEA] [GO:0010212 "response to
ionizing radiation" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0050769 "positive regulation of neurogenesis"
evidence=IEA] InterPro:IPR003034 InterPro:IPR005160
InterPro:IPR006164 InterPro:IPR006165 Pfam:PF02037 Pfam:PF02735
Pfam:PF03730 PIRSF:PIRSF003033 PROSITE:PS50800 SMART:SM00513
SMART:SM00559 GO:GO:0005737 GO:GO:0003677 GO:GO:0010212
GO:GO:0050769 Gene3D:1.10.720.30 GO:GO:0004003 GO:GO:0005958
GO:GO:0006303 EMBL:Z83840 GO:GO:0033151 Gene3D:1.10.1600.10
Gene3D:2.40.290.10 InterPro:IPR005161 InterPro:IPR016194
PANTHER:PTHR12604:SF2 Pfam:PF03731 SUPFAM:SSF100939
TIGRFAMs:TIGR00578 HGNC:HGNC:4055 IPI:IPI00893062
ProteinModelPortal:F5H1I8 SMR:F5H1I8 PRIDE:F5H1I8
Ensembl:ENST00000428575 ArrayExpress:F5H1I8 Bgee:F5H1I8
Uniprot:F5H1I8
Length = 476
Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
Identities = 161/486 (33%), Positives = 248/486 (51%)
Query: 141 GSRENSLYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIKGAAKNDMTRTTMQRAK 200
GS + SL LWV L K + KRI+LFTNED+P G+ +AK RT +A
Sbjct: 5 GS-DYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGN--DSAKASRART---KAG 58
Query: 201 DAQDLGISIELLPLSPPDEEFKVSHFYADMIGL-EGDDLALFMPSAGQKLEDMKDQLRKR 259
D +D GI ++L+ L P F +S FY D+I + E +DL + + KLED+ ++R +
Sbjct: 59 DLRDTGIFLDLMHLKKPGG-FDISLFYRDIISIAEDEDLRVHFEESS-KLEDLLRKVRAK 116
Query: 260 MFSKRIVKRISFIIANGLSIELNTYALIRPTVPGAITWLDSVTNHPLKTE-RSFICADTG 318
KR + R+ + + I + Y L++ + L TN P+KT+ R+F + G
Sbjct: 117 ETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVKTKTRTFNTSTGG 176
Query: 319 ALMQEPAKRFQPYKGENIKFSVQELSEIKRVSTGHLRLHGFKPLSYLKDYHNLRPSTFVF 378
L+ KR Q Y I +E E+KR L L GFKPL LK +H LRPS FV+
Sbjct: 177 LLLPSDTKRSQIYGSRQIILEKEETEELKRFDDPGLMLMGFKPLVLLKKHHYLRPSLFVY 236
Query: 379 PSDKEVVGSTCIFIALHRSMLRLNRFAVAFYGNPSN--PRLVALVAQDEIVRAGG-QVEP 435
P + V+GS+ +F AL L A+ Y N P VALV Q+E + QV P
Sbjct: 237 PEESLVIGSSTLFSALLIKCLEKEVAALCRYTPRRNIPPYFVALVPQEEELDDQKIQVTP 296
Query: 436 PGMHMIYLPYSDDIRPVEELHSDTDAVPRASDDEVKKAAALMKRIDLKDFSVCQFANPSL 495
PG +++LP++DD R + T+ + A+ ++V K A+++++ + F NP L
Sbjct: 297 PGFQLVFLPFADDKRKMPF----TEKI-MATPEQVGKMKAIVEKLRFT-YRSDSFENPVL 350
Query: 496 QRHYAVLQALALEEDDMPEIKDETVPDEEGMARPGVVKAVEEFKLSVYGDNYDEEGDVKV 555
Q+H+ L+ALAL+ + + D T+P E M + + V+EFK VY +Y+ EG KV
Sbjct: 351 QQHFRNLEALALDLMEPEQAVDLTLPKVEAMNKR-LGSLVDEFKELVYPPDYNPEG--KV 407
Query: 556 SEASRKRKAATENAAK-ECANYDWADLADKGKLKEMTVQELKLYLMAHNLSTTGRKETLI 614
++ + + K E + + KG L + TV LK A+ L + +K+ L+
Sbjct: 408 TKRKHDNEGSGSKRPKVEYSEEELKTHISKGTLGKFTVPMLKEACRAYGLKSGLKKQELL 467
Query: 615 SRILTH 620
+ H
Sbjct: 468 EALTKH 473
>POMBASE|SPCC126.02c [details] [associations]
symbol:pku70 "Ku domain protein Pku70" species:4896
"Schizosaccharomyces pombe" [GO:0000084 "S phase of mitotic cell
cycle" evidence=IMP] [GO:0000723 "telomere maintenance"
evidence=IMP] [GO:0000781 "chromosome, telomeric region"
evidence=IDA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IMP] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0043564 "Ku70:Ku80 complex" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IPI]
InterPro:IPR002035 InterPro:IPR003034 InterPro:IPR005160
InterPro:IPR006164 InterPro:IPR006165 Pfam:PF02037 Pfam:PF02735
Pfam:PF03730 PIRSF:PIRSF003033 PROSITE:PS50800 SMART:SM00327
SMART:SM00513 SMART:SM00559 PomBase:SPCC126.02c GO:GO:0005524
GO:GO:0005634 EMBL:CU329672 GenomeReviews:CU329672_GR
Gene3D:1.10.720.30 GO:GO:0006310 GO:GO:0004003 GO:GO:0000084
GO:GO:0000781 GO:GO:0000723 GO:GO:0042162 GO:GO:0005958
GO:GO:0006303 eggNOG:NOG305318 KO:K10884 OMA:RTFNVNT
Gene3D:1.10.1600.10 Gene3D:2.40.290.10 InterPro:IPR005161
InterPro:IPR016194 PANTHER:PTHR12604:SF2 Pfam:PF03731
SUPFAM:SSF100939 TIGRFAMs:TIGR00578 HOGENOM:HOG000174738
OrthoDB:EOG48WG97 PIR:T40906 RefSeq:NP_588445.1
ProteinModelPortal:O94395 STRING:O94395 EnsemblFungi:SPCC126.02c.1
GeneID:2539090 KEGG:spo:SPCC126.02c NextBio:20800262 Uniprot:O94395
Length = 607
Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 154/623 (24%), Positives = 293/623 (47%)
Query: 23 EHEATKEY-VVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVA 81
E+ A +Y ++++++ SP M P ++ T + +A+ C Q ++I D +
Sbjct: 11 ENFAIGKYAILFVIEVSPSMLD---PVDEFTPSS-LQMALICAYQLAAQRVITNPSDIMG 66
Query: 82 ICFFNTRKKKNLQDLNAVFVFNVAEREQLDRPTARFIKEFDHIEESFEKEIG-SQYGIVS 140
+ + T + N + + ++ D P A IK +SFEK+ S+
Sbjct: 67 VLLYGTESSTG-RFANQMMLLDI------DPPDAERIKSL----QSFEKDFQFSKEKFKP 115
Query: 141 GSRENSLYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIKGAAKNDMTRTTMQRAK 200
S + SL + L+ + ++ +KR+ L T+ D P A + D+ +QRAK
Sbjct: 116 CSCQVSLSSVLYHCSVIFTT-KAENFEKRLFLITDNDHPAWD---ATERDII---LQRAK 168
Query: 201 DAQDLGISIELLPLSPPDEEFKVSHFYADMIGLE-GDDLALFMPSAGQ-KLEDMKDQLRK 258
D +DL I + + L PP F+++ FY+D + + G + + GQ +L+ M + +
Sbjct: 169 DLRDLDIQVHPVFLDPPTHSFRINIFYSDFLYIVYGRQDVSNLVNRGQAQLQHMLNMITA 228
Query: 259 RMFSKRIVKRISFIIANGLSIELNTYALIRPTVPGAITWLDSVTNH-----PLKTERSFI 313
KR + + N + I + + L++ W+ + P + SF
Sbjct: 229 LQKPKRAHFHLKMDLGNDVRIGVEAFILLKRLESAKTNWVYAKGERFAVAVPQSKQVSF- 287
Query: 314 CADTGALMQEPAKRFQPYKGENIKFSVQELSEIKRVSTGHLRLHGFKPLSYLKDYHNLRP 373
A L ++ +R Y G ++ F EL++++ LR+ GF+ S LK +H L+P
Sbjct: 288 -ATKKELKKDEIRRSYSYGGSSVVFGSDELNKVRSFEPPTLRIIGFRDFSTLKPWHCLKP 346
Query: 374 STFVFPSDKEVVGSTCIFIALHRSMLRLNRFAVA-FYGNPS-NPRLVALVAQDEIVRAGG 431
+ F+ P D E++GS +F A+H+ +L N+ +A F P+ NP VA++A +
Sbjct: 347 AVFLRPKDDEIIGSGAVFSAIHKKLLASNKIGIAWFVSRPNANPCFVAMLATPGSIHIRD 406
Query: 432 QVEPP-GMHMIYLPYSDDIRPVEELHSDTDAVPRASDDEVKKAAALMKRIDLKDFSVCQF 490
E P G+ ++ LP +DDIR + ++ + ++P + ++ +++ ++L+ + ++
Sbjct: 407 DFELPLGIFLVQLPTADDIRSLPPINPNPISMP---SNLIETMQRILRGMELRSYQPGKY 463
Query: 491 ANPSLQRHYAVLQALALEEDDMPEIKDETVPDEEGMA-RPGVVKAVEEFKLSVYGDNYDE 549
NPSLQ HY VLQALAL+E+ + D T+P + + R G ++ Y ++ +
Sbjct: 464 NNPSLQWHYKVLQALALDEEIPTDFVDNTLPKYKAIQKRVGEYMGDVNNIVAEYRNDISD 523
Query: 550 EGDVKVSEASRK---RKAATENAAKECANYD--WADLADKG----KLKEMTVQELKLYLM 600
+ +K E + +KA E + K D L +G ++K + V +LK L
Sbjct: 524 KNGIKEEEEDQGPIVKKARIEKSGKPIFAEDDRLKQLYIEGVLDKEIKALKVSQLKDILR 583
Query: 601 AHNLSTTGRKETLISRILTHMGK 623
L +G+K L+ + ++ K
Sbjct: 584 DRGLRVSGKKADLLDNLTNYVKK 606
>ASPGD|ASPL0000064203 [details] [associations]
symbol:nkuA species:162425 "Emericella nidulans"
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IMP] [GO:0006348 "chromatin silencing at
telomere" evidence=IMP] [GO:0000781 "chromosome, telomeric region"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0042162
"telomeric DNA binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0005958
"DNA-dependent protein kinase-DNA ligase 4 complex" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0000084 "S phase of mitotic cell cycle" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] InterPro:IPR003034
InterPro:IPR005160 InterPro:IPR006164 InterPro:IPR006165
Pfam:PF02037 Pfam:PF02735 Pfam:PF03730 PIRSF:PIRSF003033
PROSITE:PS50800 SMART:SM00513 SMART:SM00559 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.720.30 GO:GO:0006310 EMBL:BN001304
GO:GO:0004003 EMBL:AACD01000132 GO:GO:0000781 GO:GO:0005958
GO:GO:0006303 HSSP:P12956 eggNOG:NOG305318 KO:K10884
Gene3D:1.10.1600.10 Gene3D:2.40.290.10 InterPro:IPR005161
InterPro:IPR016194 PANTHER:PTHR12604:SF2 Pfam:PF03731
SUPFAM:SSF100939 TIGRFAMs:TIGR00578 RefSeq:XP_681022.1
ProteinModelPortal:Q5AVC7 STRING:Q5AVC7 GeneID:2869733
KEGG:ani:AN7753.2 HOGENOM:HOG000174738 OrthoDB:EOG48WG97
Uniprot:Q5AVC7
Length = 629
Score = 425 (154.7 bits), Expect = 3.2e-38, P = 3.2e-38
Identities = 164/639 (25%), Positives = 301/639 (47%)
Query: 21 YQEHEATKEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEV 80
Y+E + +E +D +P+ + + Q+ E+ A+ C ++ +II+ D +
Sbjct: 5 YREDDVVEEEEE--LDEAPR---PSADPKRQSYESPATAALKCAYHLMQQRIISNPRDMI 59
Query: 81 AICFFNTRKKKNL-QDLNA---VFVFNVAEREQLDRPTARFIKEFDHIEESFEKEIGSQY 136
+ + T++ K +D N+ + N L+ P+A + E + + ++E +
Sbjct: 60 GVLLYGTKQSKFYDEDENSRGDLTYPNCYLFTDLNIPSAHEVLELRSLVQ--DEENAKK- 116
Query: 137 GIVSGSREN-SLYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIKGAAKNDMTRTT 195
I+ S E S+ N L+ + + +R+ + T+ D+P G K+ + T
Sbjct: 117 -ILEPSNEPVSMANLLFCVNQIFTLKAPNFLSRRLFIVTDNDNPHGD----NKSFRSAAT 171
Query: 196 MQRAKDAQDLGISIELLPLSPPDEEFKVSHFYADMIGL----EGDDLALFMPSAGQKLED 251
+ RAKD DLG++IEL P+S + EF S FY D+I + D A P A K+ D
Sbjct: 172 V-RAKDLYDLGVTIELFPISQIEHEFDTSKFYDDIIYKASPNDPDAPAYLKPDA--KMND 228
Query: 252 MKDQ------LRKRMFSKRIVKRISFI-----IANGLSIELNTYALIR--PTVPGAITWL 298
+D L + S+ + +R F + I ++ Y L + + WL
Sbjct: 229 AQDGISLLNGLLSSINSRSVPRRAQFSNMSLELGPNFKISVSGYILFKRQESARSCYVWL 288
Query: 299 DSVTNHPLKTERSFICADTGALMQE-PAKRFQPYKGENIKFSVQELSEIKRVSTGHLRLH 357
K + I D+ +++ K+ + G+ + F+ +E +K +R+
Sbjct: 289 GGEKPQIAKGVTTQIADDSARTIEKWEIKKAYKFGGDQVCFTPEEQKSLKDFGEPVIRII 348
Query: 358 GFKPLSYLKDYHNLRPSTFVFPSDKEVVGSTCIFIALHRSMLRLNRFAVAFY--GNPSNP 415
GFKPLS L + N++ F++P++++ VGST +F AL++ +LR + A+ +Y ++P
Sbjct: 349 GFKPLSTLPFWANIKHPLFIYPTEEDYVGSTRVFSALYQKLLRDQKVALVWYIARKAASP 408
Query: 416 RLVALVAQDEIVRAGG-QVEPPGMHMIYLPYSDDIRPVEELHSDTDAVPRASDDEVKKAA 474
L A++A +E V G Q PPGM +I LP++DD+R E + P D+++
Sbjct: 409 VLGAMMAGEEKVDENGIQKIPPGMWIIPLPFADDVRQNPE--TALQVAPEPLIDQMR--- 463
Query: 475 ALMKRIDLKD--FSVCQFANPSLQRHYAVLQALALEEDDMPEIKDE-TVPDEEGM-ARPG 530
+++++ L + ++ NPSLQ HY +LQALAL+ED +PE D+ T+P + R G
Sbjct: 464 TVIQQLQLPKGVYDPQKYPNPSLQWHYRILQALALDED-VPEKPDDKTIPKYRQIDKRAG 522
Query: 531 --VVKAVEEFKLSVYGDNYDEEGDVKVSEASRKR----KAA--TENAAKECANYDWADLA 582
V+ +E + D+ +++ K KAA + E + + D
Sbjct: 523 GYVLDWADELEKQYAKITADQPKSTTLAKRPAKADNPDKAAPPAKKVKAEAGSGNIQDEV 582
Query: 583 DKG----KLKEMTVQELKLYLMAHNLSTTGRKETLISRI 617
K L ++TV L+ +L + +T G+K L+ R+
Sbjct: 583 QKHFEQHTLSKLTVATLRDFLASQGRATAGKKAELLERV 621
>FB|FBgn0011774 [details] [associations]
symbol:Irbp "Inverted repeat-binding protein" species:7227
"Drosophila melanogaster" [GO:0003677 "DNA binding"
evidence=ISS;NAS;IDA] [GO:0043564 "Ku70:Ku80 complex" evidence=IDA]
[GO:0046982 "protein heterodimerization activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=NAS] [GO:0004677 "DNA-dependent
protein kinase activity" evidence=NAS] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA;NAS] [GO:0042162 "telomeric DNA
binding" evidence=IEA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0000723 "telomere maintenance"
evidence=IMP] InterPro:IPR005160 InterPro:IPR006164
InterPro:IPR006165 Pfam:PF02735 Pfam:PF03730 PIRSF:PIRSF003033
SMART:SM00559 EMBL:AE014297 GO:GO:0005524 GO:GO:0005694
GO:GO:0003677 GO:GO:0006310 GO:GO:0046982 GO:GO:0004003
GO:GO:0000723 GO:GO:0005958 GO:GO:0006303 eggNOG:NOG305318
KO:K10884 Gene3D:1.10.1600.10 Gene3D:2.40.290.10 InterPro:IPR005161
InterPro:IPR016194 PANTHER:PTHR12604:SF2 Pfam:PF03731
SUPFAM:SSF100939 TIGRFAMs:TIGR00578 EMBL:U05208 EMBL:U15004
EMBL:AY071244 EMBL:BT044080 EMBL:FJ218647 EMBL:FJ218648
EMBL:FJ218649 EMBL:FJ218650 EMBL:FJ218651 EMBL:FJ218652
EMBL:FJ218653 EMBL:FJ218654 EMBL:FJ218655 EMBL:FJ218656
EMBL:FJ218657 EMBL:FJ218658 EMBL:FJ218659 EMBL:FJ218660
EMBL:FJ218661 EMBL:FJ218662 PIR:A53623 RefSeq:NP_536773.1
UniGene:Dm.2785 ProteinModelPortal:Q23976 SMR:Q23976 IntAct:Q23976
STRING:Q23976 PaxDb:Q23976 EnsemblMetazoa:FBtr0082385 GeneID:117419
KEGG:dme:Dmel_CG5247 CTD:30735 FlyBase:FBgn0011774
GeneTree:ENSGT00390000001422 InParanoid:Q8SYY3 OMA:FYKEFIT
OrthoDB:EOG4Q2BXF PhylomeDB:Q23976 GenomeRNAi:117419 NextBio:841981
Bgee:Q23976 GermOnline:CG5247 GO:GO:0043564 Uniprot:Q23976
Length = 631
Score = 206 (77.6 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 98/421 (23%), Positives = 180/421 (42%)
Query: 109 QLDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRKGSSKTADK 168
QL +P EF E + YG+ + + +L K K +
Sbjct: 109 QLTKPIVEHYLEF---MGGVETQFADVYGLAEPDGRGRFDLMIRLCIEMLEKCGKKLNNA 165
Query: 169 RILLFTNEDDPFGSIKGAAKNDMTRTTMQRAKDAQDLGISIELLPLSPPDEEFKVSHFYA 228
+I T+ +P S ++ + +Q+A D + ++P+ ++F FY
Sbjct: 166 KIAYVTDVREPHPS-----NSNHFQAALQKASDLEGKEFEFHVIPMV---DDFDYEPFYK 217
Query: 229 DMIGLE-GDDLALF-MPSAGQKLEDMKDQLRKRMFSKRIVKRISFIIANGLSIELNTYAL 286
+ I L +L F +P A E + D+ K+ F +R + SF + LS+ + Y
Sbjct: 218 EFITLSRAIELDAFQVPDAQMLREILSDRKLKQDFLRRCLGHFSFYLGPNLSMSVQYYNY 277
Query: 287 I-RPTVPGAITWLDSVTNHPLKTERSFICA---DTGALMQEPAKRFQP----YK---GE- 334
R P + L N ++T+R D G+ E + + Y GE
Sbjct: 278 FQRRAYPRKVQILRR-DNSVVRTKRVITVQKQKDDGSQDIEHEYQIKVTGGWYTCNVGER 336
Query: 335 NIKFSVQELSEIKRVSTGHLRLHGFKPLSYLKDYHNLRPSTFVFPSDKEVVGSTCIFIAL 394
+++ S+ +L+ ++ + + L GFK S L + ++P+ F++P D+ ++GS +F AL
Sbjct: 337 DLRISMDQLNRVRNLHKPQMMLLGFKHRSSLPEVSYIKPANFMYPDDQSIIGSKRLFRAL 396
Query: 395 HRSMLRLNRFAVAFY--GNPSNPRLVALV---AQD--EIVRAGGQVEPPGMHMIYLPYSD 447
L ++ A+ + S PR VALV A D E + G ++YLP +
Sbjct: 397 WERCLVRDKIAICLFMCKRKSIPRYVALVPVEAPDNGEDKNYRSLLCGDGFKIVYLPEAK 456
Query: 448 DIRPVEELHSDTDAVPRASDDEVKKAAALMKRIDLKDFSVCQFANPSLQRHYAVLQALAL 507
IR ++ L + A + +V+ ++K++ + D+ +PSL A L AL+L
Sbjct: 457 HIRHLD-LQDWNNTENTADEQKVEFFQKIIKKLRV-DYQPNLINDPSLDALQANLLALSL 514
Query: 508 E 508
+
Sbjct: 515 D 515
>SGD|S000004897 [details] [associations]
symbol:YKU70 "Subunit of the telomeric Ku complex
(Yku70p-Yku80p)" species:4932 "Saccharomyces cerevisiae"
[GO:0000781 "chromosome, telomeric region" evidence=IEA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IEA;IDA] [GO:0043564 "Ku70:Ku80 complex"
evidence=IEA;IDA] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IGI;IMP] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000723
"telomere maintenance" evidence=IEA;IMP] [GO:0003684 "damaged DNA
binding" evidence=IEA;TAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IDA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0005724 "nuclear telomeric
heterochromatin" evidence=TAS] [GO:0000727 "double-strand break
repair via break-induced replication" evidence=IGI;IMP] [GO:0006342
"chromatin silencing" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=TAS]
InterPro:IPR005160 InterPro:IPR006164 InterPro:IPR006165
Pfam:PF02735 Pfam:PF03730 PIRSF:PIRSF003033 SMART:SM00559
SGD:S000004897 GO:GO:0005524 GO:GO:0005635 GO:GO:0003684
GO:GO:0003723 GO:GO:0030466 EMBL:BK006946 GO:GO:0006333
GO:GO:0004003 EMBL:Z49704 GO:GO:0005724 GO:GO:0000723 GO:GO:0005958
GO:GO:0006303 GO:GO:0000727 eggNOG:NOG305318 KO:K10884
Gene3D:1.10.1600.10 Gene3D:2.40.290.10 InterPro:IPR005161
InterPro:IPR016194 PANTHER:PTHR12604:SF2 Pfam:PF03731
SUPFAM:SSF100939 GeneTree:ENSGT00390000001422 GO:GO:0043564
EMBL:X70379 EMBL:D15052 EMBL:AM296304 EMBL:AM296302 EMBL:AM296301
EMBL:AM296299 EMBL:AM296298 EMBL:AM296297 EMBL:AM296296
EMBL:AM296294 EMBL:AM296292 EMBL:AM296295 EMBL:AM296303
EMBL:AM296293 EMBL:AY692863 PIR:S54591 RefSeq:NP_014011.1
ProteinModelPortal:P32807 DIP:DIP-2483N IntAct:P32807
MINT:MINT-619653 STRING:P32807 PaxDb:P32807 PeptideAtlas:P32807
PRIDE:P32807 EnsemblFungi:YMR284W GeneID:855328 KEGG:sce:YMR284W
CYGD:YMR284w OMA:KPPYLKL OrthoDB:EOG46DQBC NextBio:979046
ArrayExpress:P32807 Genevestigator:P32807 GermOnline:YMR284W
Uniprot:P32807
Length = 602
Score = 172 (65.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 104/466 (22%), Positives = 196/466 (42%)
Query: 93 LQDLNAVFVFNVAEREQLDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALW 152
L+D+NA F+ + + + D + R I +D+ F+ + GS+ + R + L+ +
Sbjct: 100 LRDINATFMKKLNDLLE-DLSSGR-ISLYDYF--MFQ-QTGSEKQV----RLSVLFT--F 148
Query: 153 VAQGLLRK--GSSKTADKRILLFTNEDDPFGSIKGAAKNDMTRTTMQRAK-DAQDLGISI 209
+ L + G + ++KR+ LFT+ D P A++ R ++R D D ++
Sbjct: 149 MLDTFLEEIPGQKQLSNKRVFLFTDIDKP-----QEAQDIDERARLRRLTIDLFDNKVNF 203
Query: 210 ELLPLSPPDEEFKVSHFYADMIGL-----EGDDLALFMPSAGQKLEDMKDQLRKRMFSKR 264
+ D+ F + FY+D++ L E L K D K ++ R+ K+
Sbjct: 204 ATFFIGYADKPFD-NEFYSDILQLGSHTNENTGLDSEFDGPSTKPIDAK-YIKSRILRKK 261
Query: 265 IVKRISF---IIAN---GLSIELNTYALIRPTVPGA---ITWLDSVTNHPLKTERSFICA 315
VKRI F +I + + + Y + G + + ++R F+
Sbjct: 262 EVKRIMFQCPLILDEKTNFIVGVKGYTMYTHEKAGVRYKLVYEHEDIRQEAYSKRKFLNP 321
Query: 316 DTGALMQEPAKRFQPYKGENIKFSVQELSEIKRVST---GHLRLHGFKPLSYLKDY-HNL 371
TG + + PY +I S + + T L++ GF+ S Y +N+
Sbjct: 322 ITGEDVTGKTVKVYPYGDLDINLSDSQDQIVMEAYTQKDAFLKIIGFRSSSKSIHYFNNI 381
Query: 372 RPSTFVFPSDKEVVGSTCIFIALHRSMLRLNRFAVAFYGNPSNPRLVALVAQDEIVRAGG 431
S+F+ P + + GS +L + + + ++ A+ + SN V+
Sbjct: 382 DKSSFIVPDEAKYEGSIRTLASLLKILRKKDKIAILWGKLKSNSHPSLYTLSPSSVKDYN 441
Query: 432 QVEPPGMHMIYLPYSDDIRPVEELHSDTDAVPRASD-DEVKKAA-ALMKRIDLKD-FSVC 488
+ G ++ +P+ D+IR L S D D D +KK ++M +L+D ++
Sbjct: 442 E----GFYLYRVPFLDEIRKFPSLLSYDDGSEHKLDYDNMKKVTQSIMGYFNLRDGYNPS 497
Query: 489 QFANPSLQRHYAVLQALALE------EDDMPEIKDETVPDEEGMAR 528
F NP LQ+HY VL L+ E++ P K + + E+ R
Sbjct: 498 DFKNPLLQKHYKVLHDYLLQIETTFDENETPNTKKDRMMREDDSLR 543
>CGD|CAL0001964 [details] [associations]
symbol:CAS1 species:5476 "Candida albicans" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0000723 "telomere maintenance"
evidence=IMP] [GO:0043564 "Ku70:Ku80 complex" evidence=IEA]
[GO:0005635 "nuclear envelope" evidence=IEA] [GO:0006333 "chromatin
assembly or disassembly" evidence=IEA] [GO:0030466 "chromatin
silencing at silent mating-type cassette" evidence=IEA] [GO:0000727
"double-strand break repair via break-induced replication"
evidence=IEA] [GO:0006348 "chromatin silencing at telomere"
evidence=IEA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR003034 InterPro:IPR005160
InterPro:IPR006164 InterPro:IPR006165 Pfam:PF02735 GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.720.30 GO:GO:0004003 GO:GO:0000723
GO:GO:0006303 Gene3D:1.10.1600.10 Gene3D:2.40.290.10
InterPro:IPR005161 InterPro:IPR016194 PANTHER:PTHR12604:SF2
Pfam:PF03731 SUPFAM:SSF100939 EMBL:AACQ01000136 RefSeq:XP_713039.1
ProteinModelPortal:Q59TZ7 GeneID:3645292 KEGG:cal:CaO19.8728
CGD:CAL0074481 Uniprot:Q59TZ7
Length = 811
Score = 77 (32.2 bits), Expect = 0.00073, Sum P(4) = 0.00073
Identities = 25/93 (26%), Positives = 43/93 (46%)
Query: 424 DEIVRAGGQVE-PPGMHMIYLPYSDDIRPVE-ELHSDTDAVPRASDDE-VKKAAALMKRI 480
DE+ Q E P G +I LP+ +D+R + E +T +DD + L+ +
Sbjct: 589 DEVDNDDNQDEFPQGFLLIKLPWLEDVRALPGEYIKNTQREEIHNDDTLIDNFKQLLPKF 648
Query: 481 DLKDFSVCQFANPSLQRHYAVLQALALEEDDMP 513
+L + +F N SL Y V++ L+ + P
Sbjct: 649 ELSHYDPREFPNASLNYFYKVIKHEILQMELKP 681
Score = 69 (29.3 bits), Expect = 0.00073, Sum P(4) = 0.00073
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 353 HLRLHGFKPLSYLKDYHNLRPSTFVFPS-DKEVVGSTCI---------FIALHRSMLRLN 402
+L+L GF+ +S+ ++ FV P D ++ S F +L+RS ++LN
Sbjct: 491 YLKLIGFRDISHFSPVYSCGAPIFVTPDVDNGMISSAVTGGFTNSFKTFASLYRSCVKLN 550
Query: 403 RFAVAFYGNPSN--PRLVAL 420
++A+ SN P L AL
Sbjct: 551 QYAIVLGCTRSNSRPHLYAL 570
Score = 59 (25.8 bits), Expect = 0.00073, Sum P(4) = 0.00073
Identities = 16/79 (20%), Positives = 36/79 (45%)
Query: 18 NEFYQEHEATKEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLY 77
N+ ++++E KE + +L++ +P++ P + + +S I ++ II
Sbjct: 19 NKNFKQYEI-KEGIAFLIEITPELL---IPQSNLNSHSQLFEILSSINDLMQELIITSRS 74
Query: 78 DEVAICFFNTRKKKNLQDL 96
+ I F+N K L +
Sbjct: 75 TGIGIYFYNCAKSNKLSSM 93
Score = 48 (22.0 bits), Expect = 0.00073, Sum P(4) = 0.00073
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 236 DDLALFMPSAGQKLEDM---K----DQLRKRMFSKRIVKRISF 271
DD L PS G + + K DQ+RK +F + V+RI F
Sbjct: 291 DDKNLIKPSGGFSKDSIIFKKSVVGDQIRKSIFRIKEVRRIQF 333
>UNIPROTKB|Q59TZ7 [details] [associations]
symbol:CAS1 "Potential Ku DNA binding protein subunit"
species:237561 "Candida albicans SC5314" [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR003034 InterPro:IPR005160 InterPro:IPR006164
InterPro:IPR006165 Pfam:PF02735 GO:GO:0003677 GO:GO:0003700
Gene3D:1.10.720.30 GO:GO:0004003 GO:GO:0000723 GO:GO:0006303
Gene3D:1.10.1600.10 Gene3D:2.40.290.10 InterPro:IPR005161
InterPro:IPR016194 PANTHER:PTHR12604:SF2 Pfam:PF03731
SUPFAM:SSF100939 EMBL:AACQ01000136 RefSeq:XP_713039.1
ProteinModelPortal:Q59TZ7 GeneID:3645292 KEGG:cal:CaO19.8728
CGD:CAL0074481 Uniprot:Q59TZ7
Length = 811
Score = 77 (32.2 bits), Expect = 0.00073, Sum P(4) = 0.00073
Identities = 25/93 (26%), Positives = 43/93 (46%)
Query: 424 DEIVRAGGQVE-PPGMHMIYLPYSDDIRPVE-ELHSDTDAVPRASDDE-VKKAAALMKRI 480
DE+ Q E P G +I LP+ +D+R + E +T +DD + L+ +
Sbjct: 589 DEVDNDDNQDEFPQGFLLIKLPWLEDVRALPGEYIKNTQREEIHNDDTLIDNFKQLLPKF 648
Query: 481 DLKDFSVCQFANPSLQRHYAVLQALALEEDDMP 513
+L + +F N SL Y V++ L+ + P
Sbjct: 649 ELSHYDPREFPNASLNYFYKVIKHEILQMELKP 681
Score = 69 (29.3 bits), Expect = 0.00073, Sum P(4) = 0.00073
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 353 HLRLHGFKPLSYLKDYHNLRPSTFVFPS-DKEVVGSTCI---------FIALHRSMLRLN 402
+L+L GF+ +S+ ++ FV P D ++ S F +L+RS ++LN
Sbjct: 491 YLKLIGFRDISHFSPVYSCGAPIFVTPDVDNGMISSAVTGGFTNSFKTFASLYRSCVKLN 550
Query: 403 RFAVAFYGNPSN--PRLVAL 420
++A+ SN P L AL
Sbjct: 551 QYAIVLGCTRSNSRPHLYAL 570
Score = 59 (25.8 bits), Expect = 0.00073, Sum P(4) = 0.00073
Identities = 16/79 (20%), Positives = 36/79 (45%)
Query: 18 NEFYQEHEATKEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLY 77
N+ ++++E KE + +L++ +P++ P + + +S I ++ II
Sbjct: 19 NKNFKQYEI-KEGIAFLIEITPELL---IPQSNLNSHSQLFEILSSINDLMQELIITSRS 74
Query: 78 DEVAICFFNTRKKKNLQDL 96
+ I F+N K L +
Sbjct: 75 TGIGIYFYNCAKSNKLSSM 93
Score = 48 (22.0 bits), Expect = 0.00073, Sum P(4) = 0.00073
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 236 DDLALFMPSAGQKLEDM---K----DQLRKRMFSKRIVKRISF 271
DD L PS G + + K DQ+RK +F + V+RI F
Sbjct: 291 DDKNLIKPSGGFSKDSIIFKKSVVGDQIRKSIFRIKEVRRIQF 333
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.383 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 623 607 0.00087 120 3 11 22 0.40 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 614 (65 KB)
Total size of DFA: 314 KB (2161 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 55.83u 0.09s 55.92t Elapsed: 00:00:03
Total cpu time: 55.84u 0.09s 55.93t Elapsed: 00:00:03
Start: Sat May 11 07:53:01 2013 End: Sat May 11 07:53:04 2013