BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006975
(623 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FQ08|KU70_ARATH ATP-dependent DNA helicase 2 subunit KU70 OS=Arabidopsis thaliana
GN=KU70 PE=1 SV=1
Length = 621
Score = 932 bits (2409), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/625 (70%), Positives = 533/625 (85%), Gaps = 6/625 (0%)
Query: 1 MELDPDDVFRDDDEESDNEFYQEHEATKEYVVYLVDASPKMFSTTCPAEDQ-TDETHFHI 59
MELDPDDVFRD+DE+ +N+F+QE EA+KE+VVYL+DASPKMF +TCP+E++ E+HFHI
Sbjct: 1 MELDPDDVFRDEDEDPENDFFQEKEASKEFVVYLIDASPKMFCSTCPSEEEDKQESHFHI 60
Query: 60 AVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAEREQLDRPTARFIK 119
AVSCIAQSLK IINR DE+AICFFNTR+KKNLQDLN V+VFNV ER+ +DRPTAR IK
Sbjct: 61 AVSCIAQSLKAHIINRSNDEIAICFFNTREKKNLQDLNGVYVFNVPERDSIDRPTARLIK 120
Query: 120 EFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRKGSSKTADKRILLFTNEDDP 179
EFD IEESF+KEIGSQ GIVS SRENSLY+ALWVAQ LLRKGS KTADKR+ LFTNEDDP
Sbjct: 121 EFDLIEESFDKEIGSQTGIVSDSRENSLYSALWVAQALLRKGSLKTADKRMFLFTNEDDP 180
Query: 180 FGSIKGAAKNDMTRTTMQRAKDAQDLGISIELLPLSPPDEEFKVSHFYADMIGLEGDDLA 239
FGS++ + K DMTRTT+QRAKDAQDLGISIELLPLS PD++F ++ FY D+IGL D+L
Sbjct: 181 FGSMRISVKEDMTRTTLQRAKDAQDLGISIELLPLSQPDKQFNITLFYKDLIGLNSDELT 240
Query: 240 LFMPSAGQKLEDMKDQLRKRMFSKRIVKRISFIIANGLSIELNTYALIRPTVPGAITWLD 299
FMPS GQKLEDMKDQL+KR+ +KRI KRI+F+I +GLSIELN YAL+RP +PG+ITWLD
Sbjct: 241 EFMPSVGQKLEDMKDQLKKRVLAKRIAKRITFVICDGLSIELNGYALLRPAIPGSITWLD 300
Query: 300 SVTNHPLKTERSFICADTGALMQEPAKRFQPYKGENIKFSVQELSEIKRVSTGHLRLHGF 359
S TN P+K ERS+IC DTGA+MQ+P +R QPYK +NI F+V+ELS++KR+STGHLRL GF
Sbjct: 301 STTNLPVKVERSYICTDTGAIMQDPIQRIQPYKNQNIMFTVEELSQVKRISTGHLRLLGF 360
Query: 360 KPLSYLKDYHNLRPSTFVFPSDKEVVGSTCIFIALHRSMLRLNRFAVAFYGNPSNPRLVA 419
KPLS LKDYHNL+PSTF++PSDKEV+GST FIALHRSM++L RFAVAFYG + PRLVA
Sbjct: 361 KPLSCLKDYHNLKPSTFLYPSDKEVIGSTRAFIALHRSMIQLERFAVAFYGGTTPPRLVA 420
Query: 420 LVAQDEIVRAGGQVEPPGMHMIYLPYSDDIRPVEELHSDTD-AVPRASDDEVKKAAALMK 478
LVAQDEI GGQVEPPG++MIYLPY++DIR ++ELHS A PRASDD++KKA+ALM+
Sbjct: 421 LVAQDEIESDGGQVEPPGINMIYLPYANDIRDIDELHSKPGVAAPRASDDQLKKASALMR 480
Query: 479 RIDLKDFSVCQFANPSLQRHYAVLQALALEEDDMPEIKDETVPDEEGMARPGVVKAVEEF 538
R++LKDFSVCQFANP+LQRHYA+LQA+AL+E+++ E +DET+PDEEGM RP VVKA+E+F
Sbjct: 481 RLELKDFSVCQFANPALQRHYAILQAIALDENELRETRDETLPDEEGMNRPAVVKAIEQF 540
Query: 539 KLSVYGDNYDEEGDVKVSEASRKRKAATENAAKECANYDWADLADKGKLKEMTVQELKLY 598
K S+YGD+ DEE D E S+KRKA + K YD+ +LA GKLK++TV ELK Y
Sbjct: 541 KQSIYGDDPDEESDSGAKEKSKKRKAGDADDGK----YDYIELAKTGKLKDLTVVELKTY 596
Query: 599 LMAHNLSTTGRKETLISRILTHMGK 623
L A+NL +G+KE LI+RILTH+GK
Sbjct: 597 LTANNLLVSGKKEVLINRILTHIGK 621
>sp|Q7F1M0|KU70_ORYSJ ATP-dependent DNA helicase 2 subunit KU70 OS=Oryza sativa subsp.
japonica GN=KU70 PE=1 SV=1
Length = 624
Score = 842 bits (2175), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/626 (65%), Positives = 511/626 (81%), Gaps = 5/626 (0%)
Query: 1 MELDPDDVFRDDDEESDNEFYQEHEATKEYVVYLVDASPKMFSTTCPAEDQTDETHFHIA 60
M+LDP+ +FRDD +E D+ QE EA KE VVYL+DASPKMF+ A D+ +ETHFH
Sbjct: 1 MDLDPEGLFRDDSDEDDDNV-QEREANKEMVVYLIDASPKMFTPATKA-DEKEETHFHTI 58
Query: 61 VSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAEREQLDRPTARFIKE 120
V+CI +LKTQII R YDEVAICFFNT++KKNLQ+L V+V+NV ERE LDRP AR IKE
Sbjct: 59 VNCITHALKTQIIGRSYDEVAICFFNTKEKKNLQELAGVYVYNVTEREPLDRPDARLIKE 118
Query: 121 FDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRKGSSKTADKRILLFTNEDDPF 180
F IE+SF IGS+YGI SGSREN+LYNALWVAQ LLRKGS KT KRI++FTNEDDPF
Sbjct: 119 FSCIEDSFMSNIGSRYGITSGSRENTLYNALWVAQALLRKGSVKTVSKRIVIFTNEDDPF 178
Query: 181 GSIKGAAKNDMTRTTMQRAKDAQDLGISIELLPLSPPDEEFKVSHFYADMIGLEGDDLAL 240
G + GA K DM RTT+QRA+DAQDLG+SIELLPLS PDEEF +S FYAD+IGLEGD++
Sbjct: 179 GGLTGAVKTDMIRTTIQRARDAQDLGLSIELLPLSRPDEEFNMSLFYADLIGLEGDEIVD 238
Query: 241 FMPSAGQKLEDMKDQLRKRMFSKRIVKRISFIIANGLSIELNTYALIRPTVPGAITWLDS 300
++PS+G+KLEDM +QL+KRM KR VK ++F I N + IE+NTYALIR T PGAITWLDS
Sbjct: 239 YLPSSGEKLEDMTNQLKKRMMKKRKVKTLAFAITNDVCIEVNTYALIRSTTPGAITWLDS 298
Query: 301 VTNHPLKTERSFICADTGALMQEPAKRFQPYKGENIKFSVQELSEIKRVSTGHLRLHGFK 360
++N PLK ERSFIC DTGAL+Q+P KRFQ Y + +KFS +ELS++KRVS+ HLRL GFK
Sbjct: 299 ISNLPLKAERSFICNDTGALIQDPQKRFQVYNDKIVKFSTRELSDVKRVSSHHLRLLGFK 358
Query: 361 PLSYLKDYHNLRPSTFVFPSDKEVVGSTCIFIALHRSMLRLNRFAVAFYGNPSNPRLVAL 420
PL YLKDYHNLRPSTF++PSD+++ GST +F+ALH SM RL RFA+AFYGNP+ P+LVAL
Sbjct: 359 PLDYLKDYHNLRPSTFIYPSDEQIFGSTRVFVALHSSMRRLGRFALAFYGNPTRPQLVAL 418
Query: 421 VAQDEIVRAGGQVEPPGMHMIYLPYSDDIRPVEELHSDTDAVPRASDDEVKKAAALMKRI 480
+AQ+E+ AGGQ+EPPG+HMIYLPYSDD+R EE+H +D PRA+D+++KKA+ L++RI
Sbjct: 419 IAQEEVTSAGGQIEPPGIHMIYLPYSDDVRYPEEVHLTSDDAPRATDEQIKKASNLLRRI 478
Query: 481 DLKDFSVCQFANPSLQRHYAVLQALALEEDDMPEIKDETVPDEEGMARPGVVKAVEEFKL 540
DLK+FSVCQF+NP+LQRHY +L+ALAL ED+MP++KDET+PDEEG+ARP VVKAVEEFK
Sbjct: 479 DLKNFSVCQFSNPALQRHYGILEALALGEDEMPDVKDETLPDEEGLARPVVVKAVEEFKA 538
Query: 541 SVYGDNYDEEGDVKVSEASRKRKAA---TENAAKECANYDWADLADKGKLKEMTVQELKL 597
SVYG+NYD+E + + K T+ AA++ A ++WA+LAD GKLK+MTV +LK
Sbjct: 539 SVYGENYDQEEAEAAAAKAGASKKRKALTDAAAEKSAAHNWAELADTGKLKDMTVVDLKS 598
Query: 598 YLMAHNLSTTGRKETLISRILTHMGK 623
YL AH L +G+KE L+SRILTH+GK
Sbjct: 599 YLSAHGLPVSGKKEALVSRILTHLGK 624
>sp|O93257|XRCC6_CHICK X-ray repair cross-complementing protein 5 OS=Gallus gallus
GN=XRCC6 PE=2 SV=1
Length = 632
Score = 263 bits (673), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 195/602 (32%), Positives = 302/602 (50%), Gaps = 46/602 (7%)
Query: 26 ATKEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFF 85
+ ++ +++LVDAS MF P E++ T F + + CI ++II+ D +++ F+
Sbjct: 54 SGRDSLIFLVDASKAMFE---PYENEEAATPFDMTMQCIRNVYTSKIISSDKDLLSVVFY 110
Query: 86 NTRKKKNLQDLNAVFVFNVAEREQLDRPTARFIKEFDHIEES-----FEKEIGSQYGIVS 140
KN D ++V ++LD P A+ I E D F + G
Sbjct: 111 GMENNKNSADFKHIYVL-----QELDNPGAKRILELDQYRGDEGRVLFRETFGH------ 159
Query: 141 GSRENSLYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIKGAAKNDMTRTTMQRAK 200
+ + SL ALW L + + KRI+LFTNED+P + +AK + RT RA
Sbjct: 160 -NADYSLGEALWACSNLFSDVRVRLSHKRIMLFTNEDNPHAN--DSAKAKLART---RAG 213
Query: 201 DAQDLGISIELLPLSPPDEEFKVSHFYADMIGLEGDDLALFMPSAGQKLEDMKDQLRKRM 260
D +D GI ++L+ L P F +S FY D+I + D+ P KLE + ++R +
Sbjct: 214 DLRDTGIILDLMHLKKPGG-FDISLFYRDIINVAEDEDLGIQPDESGKLEHLMKKVRAKE 272
Query: 261 FSKRIVKRISFIIANGLSIELNTYALIRPTVPGAITWLDSVTNHPLKTERSFICADTGAL 320
KR + R++ + LS + Y LI+ L TN P+KT+ TG+L
Sbjct: 273 TRKRALSRLNLYLNKDLSFSVGVYNLIQKAYKPYPVKLYRETNEPVKTKTRVFNGKTGSL 332
Query: 321 M-QEPAKRFQPYKGENIKFSVQELSEIKRVSTGHLRLHGFKPLSYLKDYHNLRPSTFVFP 379
+ KR Q Y I +E E+KR + L L GFKPLS LK +H++RPS F++P
Sbjct: 333 LLPSDTKRAQTYGNRQIAMEKEETEEVKRFDSPGLFLIGFKPLSMLKQHHHIRPSQFMYP 392
Query: 380 SDKEVVGSTCIFIALHRSMLRLNRFAVAFYGNPSN--PRLVALVAQDEIV-RAGGQVEPP 436
+ V GST +F AL L A+ Y N PR+VAL+ Q+E V Q+ PP
Sbjct: 393 EESLVTGSTTLFNALLMKCLEKEVMALCRYIARRNTPPRIVALIPQEEEVDEQKVQIAPP 452
Query: 437 GMHMIYLPYSDDIRPVEELHSDTDAVPRASDDEVKKAAALMKRIDLKDFSVCQFANPSLQ 496
G H+I+LPY+DD R V+ T+ VP A+ ++V K +++++ K + F NP LQ
Sbjct: 453 GFHIIFLPYADDKRNVDF----TEKVP-ANREQVDKMKGIIQKLRFK-YRTDSFENPVLQ 506
Query: 497 RHYAVLQALALEEDDMPEIKDETVPDEEGMARPGVVKAVEEFKLSVYGDNYDEEGDVKVS 556
+H+ L+ALAL+ + + +D T+P E M+R + VEEFK VY +Y EG
Sbjct: 507 QHFRNLEALALDMLEPEQAEDLTMPKTEEMSR-RLGNLVEEFKQLVYPPDYSPEG----- 560
Query: 557 EASRKRKAATENAAK----ECANYDWADLADKGKLKEMTVQELKLYLMAHNLSTTGRKET 612
+A+++++A A K E + G L ++TV LK + L + G+K+
Sbjct: 561 KAAKRKQAGDAQAEKRPKIEISEDSLRSYVQNGTLGKLTVSALKDTCRHYGLRSGGKKQE 620
Query: 613 LI 614
LI
Sbjct: 621 LI 622
>sp|P23475|XRCC6_MOUSE X-ray repair cross-complementing protein 6 OS=Mus musculus GN=Xrcc6
PE=1 SV=5
Length = 608
Score = 234 bits (596), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 191/606 (31%), Positives = 302/606 (49%), Gaps = 37/606 (6%)
Query: 26 ATKEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFF 85
+ ++ +++LVDAS MF + ED+ T F +++ CI ++II+ D +A+ F+
Sbjct: 31 SGRDSLIFLVDASRAMFESQ--GEDEL--TPFDMSIQCIQSVYTSKIISSDRDLLAVVFY 86
Query: 86 NTRKKKNLQDLNAVFVFNVAEREQLDRPTARFIKEFDHIEESFEKEIGSQY--GIVSGSR 143
T K KN + ++V + LD P A+ + E D F+ + G ++ V
Sbjct: 87 GTEKDKNSVNFKNIYVL-----QDLDNPGAKRVLELDQ----FKGQQGKKHFRDTVGHGS 137
Query: 144 ENSLYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIKGAAKNDMTRTTMQRAKDAQ 203
+ SL LWV L K + KRI+LFTNEDDP G + +AK RT +A D +
Sbjct: 138 DYSLSEVLWVCANLFSDVQLKMSHKRIMLFTNEDDPHG--RDSAKASRART---KASDLR 192
Query: 204 DLGISIELLPLSPPDEEFKVSHFYADMIGL-EGDDLALFMPSAGQKLEDMKDQLRKRMFS 262
D GI ++L+ L P F VS FY D+I E +DL + + KLED+ ++R +
Sbjct: 193 DTGIFLDLMHLKKPGG-FDVSVFYRDIITTAEDEDLGVHFEESS-KLEDLLRKVRAKETK 250
Query: 263 KRIVKRISFIIANGLSIELNTYALIRPTVPGAITWLDSVTNHPLKTERSFICADTGALM- 321
KR++ R+ F + + + + Y L++ L TN P+KT+ +TG+L+
Sbjct: 251 KRVLSRLKFKLGEDVVLMVGIYNLVQKANKPFPVRLYRETNEPVKTKTRTFNVNTGSLLL 310
Query: 322 QEPAKRFQPYKGENIKFSVQELSEIKRVSTGHLRLHGFKPLSYLKDYHNLRPSTFVFPSD 381
KR Y I +E E+KR L L GFKP LK H LRPS FV+P +
Sbjct: 311 PSDTKRSLTYGTRQIVLEKEETEELKRFDEPGLILMGFKPTVMLKKQHYLRPSLFVYPEE 370
Query: 382 KEVVGSTCIFIALHRSMLRLNRFAVAFYGNPSN--PRLVALVAQ-DEIVRAGGQVEPPGM 438
V GS+ +F AL + AV Y N P VALV Q +E+ QV P G
Sbjct: 371 SLVSGSSTLFSALLTKCVEKKVIAVCRYTPRKNVSPYFVALVPQEEELDDQNIQVTPGGF 430
Query: 439 HMIYLPYSDDIRPVEELHSDTDAVPRASDDEVKKAAALMKRIDLKDFSVCQFANPSLQRH 498
+++LPY+DD R V T A+ +++ K A+++++ + F NP LQ+H
Sbjct: 431 QLVFLPYADDKRKVPFTEKVT-----ANQEQIDKMKAIVQKLRFT-YRSDSFENPVLQQH 484
Query: 499 YAVLQALALEEDDMPEIKDETVPDEEGMARPGVVKAVEEFKLSVYGDNYDEEGDVKVSEA 558
+ L+ALAL+ + ++ D T+P E + + + +EFK VY Y+ EG KV++
Sbjct: 485 FRNLEALALDMMESEQVVDLTLPKVEAIKK-RLGSLADEFKELVYPPGYNPEG--KVAKR 541
Query: 559 SRKRKAATENAAK-ECANYDWADLADKGKLKEMTVQELKLYLMAHNLSTTGRKETLISRI 617
+ + +T K E + + KG L ++TV LK AH L + +K+ L+ +
Sbjct: 542 KQDDEGSTSKKPKVELSEEELKAHFRKGTLGKLTVPTLKDICKAHGLKSGPKKQELLDAL 601
Query: 618 LTHMGK 623
+ H+ K
Sbjct: 602 IRHLEK 607
>sp|P12956|XRCC6_HUMAN X-ray repair cross-complementing protein 6 OS=Homo sapiens GN=XRCC6
PE=1 SV=2
Length = 609
Score = 231 bits (590), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 196/607 (32%), Positives = 309/607 (50%), Gaps = 43/607 (7%)
Query: 26 ATKEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFF 85
+ ++ +++LVDAS MF + +ED+ T F +++ CI ++II+ D +A+ F+
Sbjct: 33 SGRDSLIFLVDASKAMFESQ--SEDEL--TPFDMSIQCIQSVYISKIISSDRDLLAVVFY 88
Query: 86 NTRKKKNLQDLNAVFVFNVAEREQLDRPTARFIKEFDHIE-ESFEKEIGSQYGIVSGSRE 144
T K KN + ++V ++LD P A+ I E D + + +K G GS +
Sbjct: 89 GTEKDKNSVNFKNIYVL-----QELDNPGAKRILELDQFKGQQGQKRFQDMMG--HGS-D 140
Query: 145 NSLYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIKGAAKNDMTRTTMQRAKDAQD 204
SL LWV L K + KRI+LFTNED+P G+ +AK RT +A D +D
Sbjct: 141 YSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGN--DSAKASRART---KAGDLRD 195
Query: 205 LGISIELLPLSPPDEEFKVSHFYADMIGL-EGDDLALFMPSAGQKLEDMKDQLRKRMFSK 263
GI ++L+ L P F +S FY D+I + E +DL + + KLED+ ++R + K
Sbjct: 196 TGIFLDLMHLKKPGG-FDISLFYRDIISIAEDEDLRVHFEESS-KLEDLLRKVRAKETRK 253
Query: 264 RIVKRISFIIANGLSIELNTYALIRPTVPGAITWLDSVTNHPLKTE-RSFICADTGALMQ 322
R + R+ + + I + Y L++ + L TN P+KT+ R+F + G L+
Sbjct: 254 RALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVKTKTRTFNTSTGGLLLP 313
Query: 323 EPAKRFQPYKGENIKFSVQELSEIKRVSTGHLRLHGFKPLSYLKDYHNLRPSTFVFPSDK 382
KR Q Y I +E E+KR L L GFKPL LK +H LRPS FV+P +
Sbjct: 314 SDTKRSQIYGSRQIILEKEETEELKRFDDPGLMLMGFKPLVLLKKHHYLRPSLFVYPEES 373
Query: 383 EVVGSTCIFIALHRSMLRLNRFAVAFYGNPSN--PRLVALVAQ-DEIVRAGGQVEPPGMH 439
V+GS+ +F AL L A+ Y N P VALV Q +E+ QV PPG
Sbjct: 374 LVIGSSTLFSALLIKCLEKEVAALCRYTPRRNIPPYFVALVPQEEELDDQKIQVTPPGFQ 433
Query: 440 MIYLPYSDDIRPVEELHSDTDAVPRASDDEVKKAAALMKRIDLKDFSVCQFANPSLQRHY 499
+++LP++DD R + T+ + A+ ++V K A+++++ + F NP LQ+H+
Sbjct: 434 LVFLPFADDKRKM----PFTEKI-MATPEQVGKMKAIVEKLRFT-YRSDSFENPVLQQHF 487
Query: 500 AVLQALALEEDDMPEIKDETVPDEEGM-ARPGVVKAVEEFKLSVYGDNYDEEGDVKV--- 555
L+ALAL+ + + D T+P E M R G + V+EFK VY +Y+ EG V
Sbjct: 488 RNLEALALDLMEPEQAVDLTLPKVEAMNKRLGSL--VDEFKELVYPPDYNPEGKVTKRKH 545
Query: 556 -SEASRKRKAATENAAKECANYDWADLADKGKLKEMTVQELKLYLMAHNLSTTGRKETLI 614
+E S ++ E + +E + KG L + TV LK A+ L + +K+ L+
Sbjct: 546 DNEGSGSKRPKVEYSEEELKTH-----ISKGTLGKFTVPMLKEACRAYGLKSGLKKQELL 600
Query: 615 SRILTHM 621
+ H
Sbjct: 601 EALTKHF 607
>sp|Q26228|KU70_RHIAP ATP-dependent DNA helicase 2 subunit 1 OS=Rhipicephalus
appendiculatus GN=ku70 PE=2 SV=1
Length = 600
Score = 218 bits (555), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 174/603 (28%), Positives = 290/603 (48%), Gaps = 45/603 (7%)
Query: 31 VVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKK 90
+++L+DA+ MF E+ +T F + ++ +I + D V I F T K
Sbjct: 29 ILFLIDATEGMF------EEVDGDTAFMQCIKAAKSTMLNKITSSPKDLVGIILFGTDKD 82
Query: 91 KNLQDLNAVFVFNVAEREQLDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNA 150
N V+V + L+ P A + + + + K+ +YG ++ +
Sbjct: 83 NNPNRFKNVYVL-----QDLESPGAESVLKLEKLIADGPKKFKQEYG----HGNVNMADV 133
Query: 151 LWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIKGAAKNDMTRTTMQRAKDAQDLGISIE 210
LW + K S+ +R+L+ TN+DDP KG+ D+ + +AKD GI ++
Sbjct: 134 LWTCALMFSK--SRAGQRRVLVLTNQDDPH---KGSG--DLDDKAVVKAKDLLQSGIELD 186
Query: 211 LLPLSPP-DEEFKVSHFYADMIGLEGDDLALFMPSAGQKLEDMKDQLRKRMFSKRIVKRI 269
L+ L PP D++F+ Y +++ + ++ P A K+E++ ++R + KR + +
Sbjct: 187 LVHLKPPGDKKFRPQILYKNLV-TDKENYEDGFPEASDKMEELLLRVRMKDHKKRRLMSL 245
Query: 270 SFIIANGLSIELNTYALIRPTVPGAITWLDSVTNHPLKTERSFICADTG-ALMQEPAKRF 328
F + + + ++ Y L+RPT A T L N L + R D+ ALM +
Sbjct: 246 PFWLGPEVKMSVSLYNLVRPTGKPATTRLARDNNEELLSRRITYAMDSAEALMPGDISKT 305
Query: 329 QPYKGENIKFSVQELSEIKRVSTGHLRLHGFKPLSYLKDYHNLRPSTFVFPSDKEVVGST 388
Q Y G F + E+ +IK ++ L+L GFKPLSYL+ ++RPS FV+P + V GST
Sbjct: 306 QEYGGRKAYFDICEVKQIKSMAPPGLQLLGFKPLSYLEKQPHVRPSHFVYPDEGSVRGST 365
Query: 389 CIFIALHRSMLRLNRFAVAFYGN--PSNPRLVALVAQDEIVRAGG-QVEPPGMHMIYLPY 445
+F AL +S LR + F+ + P+LV L+AQ+E G Q+ PPG H++ LP+
Sbjct: 366 RLFAALLQSCLRHRVAPICFWISRAAQAPKLVYLLAQEEERDPHGLQMVPPGFHVVQLPF 425
Query: 446 SDDIRPVEELHSDTDAVPRASDDEVKKAAALMKRIDLKDFSVCQFANPSLQRHYAVLQAL 505
SDD R ++ L T +A+ V A + +++ + +F NP LQ ++ L+AL
Sbjct: 426 SDDRRRLQALQEGTT---KATPGLVALAREMAEKLRFT-YHPDKFENPELQGFWSCLEAL 481
Query: 506 ALEEDDMPEIKDETVPDEEGMARPGVVKAVEEFKLSVYGDNYDEEGDVKVSEASRKRKAA 565
AL+ DD KD T PD E M KA EE + + + +G + SRKR A
Sbjct: 482 ALDRDDAEHPKDYTRPDHEKMK----AKAGEE--MDAFLEAAFPDGCSATTAGSRKRTQA 535
Query: 566 TENAA-------KECANYDWADLADKGKLKEMTVQELKLYLMAHNLSTTGRKETLISRIL 618
E + +N D + A +GKL +TV L+ + L +K ++ I
Sbjct: 536 GEGGQAKKARSENQGSNVDVREEAKRGKLASLTVSVLRDFCKQEGLRCPSKKAEIVDCIK 595
Query: 619 THM 621
H+
Sbjct: 596 KHL 598
>sp|Q2MHH4|KU70_ASPOR ATP-dependent DNA helicase II subunit 1 OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=ku70 PE=3 SV=1
Length = 655
Score = 191 bits (485), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 171/653 (26%), Positives = 310/653 (47%), Gaps = 80/653 (12%)
Query: 24 HEATKEYVVYLVDASPKMFSTTCPAEDQ---TDETHFHIAVSCIAQSLKTQIINRLYDEV 80
++ K+ V++ ++ S M T P+ D +E+ A+ C ++ +II+ D +
Sbjct: 25 YKTVKDAVLFAIEVSDSML-TPRPSSDSKKPAEESPTTAALKCAYYLMQQRIISNPRDMI 83
Query: 81 AICFFNTRKKK-------NLQDLNAVFVFNVAEREQLDRPTARFIKEFDHIEESFEKEIG 133
+ + T+ K + DL+ + + LD P+A+ +K + + ++
Sbjct: 84 GVLLYGTQASKFYDEDENSRGDLSYPHCYLFTD---LDVPSAQEVKNLRALAQDGDE--- 137
Query: 134 SQYGIVSGSRENSLYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIKGAAKNDMTR 193
S+ + + S+ N L+ A + + +R+ + T+ DDP G K +
Sbjct: 138 SKDVLKASGERVSMANVLFCANQIFTSKAPNFLSRRLFIVTDNDDPHGDNKS-----LRS 192
Query: 194 TTMQRAKDAQDLGISIELLPLSPPDEEFKVSHFYADMIG------------LEGDDLALF 241
+ RAKD DLG++IEL P+S P EF + FY D+I L+ D A
Sbjct: 193 ASTVRAKDLYDLGVTIELFPISRPGHEFDTARFYDDIIYKASPSDPDAPAYLQTDSKA-- 250
Query: 242 MPSAGQKLEDMKDQLRKRMFSKRIVKRISFI-----IANGLSIELNTYALIRPTVPG--A 294
P+ G + + + L + S+ + +R F + L I ++ Y L + P +
Sbjct: 251 SPATGDGIS-LLNTLLSNINSRSVPRRAQFSNIPLELGPNLKISVSGYLLFKRQAPARNS 309
Query: 295 ITWLDSVTNHPLKTERSFICADTGALMQE-PAKRFQPYKGENIKFSVQELSEIKRVSTGH 353
WL +K + I DT +++ K+ + G+ + F+ +E+ ++
Sbjct: 310 FIWLGGEQPQIVKGVTTQIADDTARTIEKWEIKKAYKFGGDQVAFTPEEMKSLRNFGDPV 369
Query: 354 LRLHGFKPLSYLKDYHNLRPSTFVFPSDKEVVGSTCIFIALHRSMLRLNRFAVAFYGNPS 413
+R+ GFKPLS L + N++ +F++PS+++ VGST +F ALH+++LR + A+ ++
Sbjct: 370 IRIIGFKPLSALPFWANIKHPSFIYPSEEDFVGSTRVFSALHQTLLRDKKAALVWFIARK 429
Query: 414 N--PRLVALVAQDE-IVRAGGQVEPPGMHMIYLPYSDDIR--PVEELHSDTDAVPRASDD 468
N P L A+VA +E + +G Q PPGM +I LP++DD+R P LH P D
Sbjct: 430 NASPVLGAMVAGEEKLDESGVQKFPPGMWIIPLPFADDVRQNPETTLH----VAPEPLID 485
Query: 469 EVKKAAALMKRIDLKDFSVCQFANPSLQRHYAVLQALALEEDDMPEIKDETVPDEEGM-A 527
+++ ++ + + ++ NPSLQ HY +LQALAL+ED + +D+T+P +
Sbjct: 486 QMRYIVQQLQ-LPKASYDPFKYPNPSLQWHYRILQALALDEDLPEKPEDKTLPRYRQIDK 544
Query: 528 RPG--VVKAVEEF-----KLSVYGDNYDEEGDVKVSEASRKRKAATENAAKEC-----AN 575
R G V+ +E K+S +G V +++ R + E+AA++
Sbjct: 545 RTGDYVLSWADELEKQYAKISAHGPK-----STLVKRSAKDRTSEVEDAAQKPYKKVKVE 599
Query: 576 YDWADLAD-------KGKLKEMTVQELKLYLMAHNLSTTGRKETLISRILTHM 621
D + D KG L ++TV LK +L AH S G+K L+ R+ ++
Sbjct: 600 TDEQGVEDVVRAHYQKGSLSKLTVPVLKDFLNAHGRSAAGKKADLVERVEEYL 652
>sp|Q2MHH3|KU70_ASPSO ATP-dependent DNA helicase II subunit 1 OS=Aspergillus sojae
GN=ku70 PE=3 SV=1
Length = 655
Score = 190 bits (482), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 172/653 (26%), Positives = 308/653 (47%), Gaps = 80/653 (12%)
Query: 24 HEATKEYVVYLVDASPKMFSTTCPAEDQ---TDETHFHIAVSCIAQSLKTQIINRLYDEV 80
++ K+ V++ ++ S M T P+ D +E+ A+ C ++ +II+ D +
Sbjct: 25 YKTVKDAVLFAIEVSDSML-TPRPSSDSKKPAEESPTTAALKCAYHLMQQRIISNPRDMI 83
Query: 81 AICFFNTRKKK-------NLQDLNAVFVFNVAEREQLDRPTARFIKEFDHIEESFEKEIG 133
+ + T+ K + DL+ + + LD P+A+ +K + + ++
Sbjct: 84 GVLLYGTQASKFYDEDENSRGDLSYPHCYLFTD---LDVPSAQEVKNLRALAQDGDE--- 137
Query: 134 SQYGIVSGSRENSLYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIKGAAKNDMTR 193
S+ + + S+ N L+ A + + +R+ + T+ DDP G K +
Sbjct: 138 SEDVLKASGERVSMANVLFCANQIFTSKAPNFLSRRLFIVTDNDDPHGDNKS-----LRS 192
Query: 194 TTMQRAKDAQDLGISIELLPLSPPDEEFKVSHFYADMIG------------LEGDDLALF 241
RAKD DLG++IEL P+S PD EF + FY D+I L+ D A
Sbjct: 193 AATVRAKDLYDLGVTIELFPISRPDHEFDTARFYDDIIYKASPSDPDAPAYLQTDSKA-- 250
Query: 242 MPSAGQKLEDMKDQLRKRMFSKRIVKRISFI-----IANGLSIELNTYALIRPTVPG--A 294
P+ G + + L + S+ + +R F + I ++ Y L + P +
Sbjct: 251 SPATGDGISLLS-TLLSSINSRSVPRRAQFSNIPLELGPNFKISVSGYLLFKRQAPARNS 309
Query: 295 ITWLDSVTNHPLKTERSFICADTGALMQE-PAKRFQPYKGENIKFSVQELSEIKRVSTGH 353
WL +K + I DT +++ K+ + G+ + F+ +E+ ++
Sbjct: 310 FIWLGGEQPQIVKGVTTQIADDTARTIEKWEIKKAYKFGGDQVAFTPEEMKSLRNFGDPV 369
Query: 354 LRLHGFKPLSYLKDYHNLRPSTFVFPSDKEVVGSTCIFIALHRSMLRLNRFAVAFYGNPS 413
+R+ GFKPLS L + N++ +F++PS+++ VGST +F ALH+++LR + A+ ++
Sbjct: 370 IRIIGFKPLSALPFWANIKHPSFIYPSEEDFVGSTRVFSALHQTLLRDKKAALVWFIARK 429
Query: 414 N--PRLVALVAQDE-IVRAGGQVEPPGMHMIYLPYSDDIR--PVEELHSDTDAVPRASDD 468
N P L A+VA +E + +G Q PPGM +I LP++DD+R P LH P D
Sbjct: 430 NASPVLGAMVAGEEKLDESGVQKFPPGMWIIPLPFADDVRQNPETTLH----VAPEPLID 485
Query: 469 EVKKAAALMKRIDLKDFSVCQFANPSLQRHYAVLQALALEEDDMPEIKDETVPDEEGM-A 527
+++ ++ + + ++ NPSLQ HY +LQALAL+ED + +D+T+P +
Sbjct: 486 QMRYIVQQLQ-LPKASYDPFKYPNPSLQWHYRILQALALDEDLPEKPEDKTLPRYRQIDK 544
Query: 528 RPG--VVKAVEEF-----KLSVYGDNYDEEGDVKVSEASRKRKAATENAA-----KECAN 575
R G V+ +E K+S +G V +++ R + E+AA K
Sbjct: 545 RTGDYVLSWADELEKQYAKISAHGPK-----STLVERSAKDRTSEVEDAAPKPYKKVKVE 599
Query: 576 YDWADLAD-------KGKLKEMTVQELKLYLMAHNLSTTGRKETLISRILTHM 621
D + D KG L ++TV LK +L AH S G+K+ L+ R+ ++
Sbjct: 600 TDEQGVEDVVRAPYQKGSLSKLTVPVLKNFLKAHGRSAAGKKKELVERVEEYL 652
>sp|Q7SA95|KU70_NEUCR ATP-dependent DNA helicase II subunit 1 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=ku70 PE=3 SV=2
Length = 645
Score = 187 bits (476), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 171/649 (26%), Positives = 303/649 (46%), Gaps = 62/649 (9%)
Query: 10 RDDDEESDNEFYQ-EHEATKEYVVYLVDASPKMFSTTCPAEDQTD-----ETHFHIAVSC 63
R D +E D E + +++ K+ V++ +D S M P ++ D ++ A++C
Sbjct: 10 RLDGDEGDEELDENDYKTQKDAVLFAIDVSKSMLK---PPQNTGDKKADKDSALTAALTC 66
Query: 64 IAQSLKTQIINRLYDEVAICFFNTRKKKNLQDL-NAVFVFNVAEREQLDRPTARFIKEFD 122
Q ++ +II++ D + + F T K K D N + LD P A +K+
Sbjct: 67 AYQIMQQRIISQPKDMMGVLLFGTEKSKFRDDSGNGTGYPHCYLLSDLDIPGAEDVKKLK 126
Query: 123 HIEESFEKEIGSQYGIVSGSRENSLY-NALWVAQGLLRKGSSKTADKRILLFTNEDDPFG 181
+ E + E I+ S+E + N L+ A + ++ +R+ + T+ DDP
Sbjct: 127 ALIEDGDDEDE----IMVPSKEPVIMSNMLFCANQVFTTNAANFGSRRLFIVTDNDDPHA 182
Query: 182 SIKGAAKNDMTRTTMQRAKDAQDLGISIELLPLSPPDEEFKVSHFYADMI-----GLEGD 236
K A + RAKD DLG+ IEL P+S D++F +S FY D+I G
Sbjct: 183 GDKQA-----KSSAAVRAKDLYDLGVVIELFPISREDKKFDLSKFYDDIIYRNPAAEAGQ 237
Query: 237 DLALFMPSAGQKLEDMKDQLRKRMFSKRIVKR-----ISFIIANGLSIELNTYALIRPTV 291
+ +G L + + L + SK+ KR + F +A GL+I + Y +
Sbjct: 238 SESPKTSKSGDGLT-LLNSLISNINSKQTPKRSYFSNLPFELAPGLTISIKGYMPLNRQT 296
Query: 292 PGAITWLDSVTNHPLKTERSFICADTGALMQEPAKRFQPYK--GENIKFSVQELSEIKRV 349
P ++ + D A E ++ + YK GE+I F +EL+E+K++
Sbjct: 297 PTRSCYVYEGEEQAQVVQSETAQVDFAARTVEKSELRKGYKFGGEHICFKPEELAELKQM 356
Query: 350 STGHLRLHGFKPLSYLKDYHNLRPSTFVFPSDKEVVGSTCIFIALHRSMLRLNRFAVAFY 409
LR+ GFK S + + +++ S F+FPS+++ VGST +F AL + +L+ ++ +A++
Sbjct: 357 GKKTLRIIGFKKRSKIPSWASVKKSIFIFPSEEQYVGSTRVFSALWQKLLKDDKVGIAWF 416
Query: 410 GNPSN--PRLVALV--AQDEIVRAGGQVEPPGMHMIYLPYSDDIRPVEELHSDTDAVPRA 465
N P +VA+ + A P G+ + LP++DD+R V+ + A PR
Sbjct: 417 VARENAHPVMVAIFPSGNPDDEEANTPYLPAGLWLYPLPFADDVRSVDHVT----APPRP 472
Query: 466 SDDEVKKAAALMKRIDLKD--FSVCQFANPSLQRHYAVLQALALEEDDMPEIKDETVPD- 522
+D+ + +++ + L + ++ NPSLQ HY +LQA AL+E+ + D T+P
Sbjct: 473 ADELTDQMRQVIQNLQLPKAMYDPRKYPNPSLQWHYKILQAKALDEETPDAMDDVTLPKY 532
Query: 523 --------------EEGMARPGVVKAVEEFKLSVYGDNYDEEGDVKVSEASRKRKAATEN 568
+E +A+ KA + + ++E+ + A +KAA+
Sbjct: 533 RQIDKRVGGYLAEWKEMLAK----KANDLQNTRAFKREFEEDDERPAKRAKPSKKAASGG 588
Query: 569 AAKECANYDWADLADKGKLKEMTVQELKLYLMAHNLSTTGRKETLISRI 617
+N D ++G L +MTV ELK + + +ST GRK L+ R+
Sbjct: 589 GGPANSNADLKKAFEQGTLGKMTVAELKDIMASKGISTAGRKAELVERL 637
>sp|Q54MA9|KU70_DICDI ATP-dependent DNA helicase ku70 OS=Dictyostelium discoideum GN=ku70
PE=3 SV=1
Length = 909
Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 134/440 (30%), Positives = 215/440 (48%), Gaps = 51/440 (11%)
Query: 21 YQEHEATKEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEV 80
YQ + ++ +++L+DAS MF P E+ +E FH AV C+ Q++ +II D +
Sbjct: 63 YQNPYSYRDCIIFLIDASKAMFE---PNEN--NEIPFHNAVKCLIQTITDKIITSDSDLI 117
Query: 81 AICFFNTRKKKNLQDLNAVFVFNVAEREQLDRPTARFIKEFDHIEESFEKEIGSQYGIVS 140
+CF+NT KKKN+ D ++V LD P + I +EE E + G+ +
Sbjct: 118 GVCFYNTNKKKNINDFENIYVL-----SDLDIPDPKIILT---LEEMLENSNFTTNGLGN 169
Query: 141 GSRENSLYNALWVAQGLLRKGSSKTAD----------KRILLFTNEDDPFGSIKGAAKND 190
E +ALW + + KRI LFTNED+P A ND
Sbjct: 170 CQGEMPFCDALWTCSTMFSNIKQSGSSSGENSNNNNFKRIFLFTNEDNP------NAYND 223
Query: 191 MTR-TTMQRAKDAQDLGISIELLPLSPP-DEEFKVSHFYADMIGLEGDDLALFMPS---A 245
R +++QR+KD DL I IEL ++ +++F S FY ++ + D+ P+ A
Sbjct: 224 SIRNSSIQRSKDLSDLNIQIELFSMNKSVNDKFDFSLFYQHIL-IFADEENYLDPTQFDA 282
Query: 246 GQKLEDMKDQLRKRMFSKRIVKRISFIIA-------------NGLSIELNTYALIRPTVP 292
K D++ +L+++ F KR + ++ I + + I Y L
Sbjct: 283 SSKFSDLRFKLKRKEFKKRSLGKLPLYIGNLNNNNNNSNSLDSQVIISTQLYNLFSHAHK 342
Query: 293 GAITWLDSVTNHPLKTERSFICADTGA-LMQEPAKRFQPYKGENIKFSVQELSEIKRVST 351
+ T LD TN P+K +CA+T A L+ K Y GE + F+ E+ IK +
Sbjct: 343 SSPTLLDPKTNLPVKQLIKNVCANTQATLLPSQIKLCYHYGGEPVIFTKDEMQTIKSIDR 402
Query: 352 GHLRLHGFKPLSYLKDYHNLRPSTFVFPSDKEVVGSTCIFIALHRSMLRLNRFAVAFYG- 410
L GFKPL +K YH+++ S F+FP D+ + GS F AL ML+ + A+ +
Sbjct: 403 IGFTLLGFKPLENIKPYHSIKHSQFIFPDDQSIKGSVLAFNALVEQMLKSGKAAICRFTP 462
Query: 411 -NPSNPRLVALVAQDEIVRA 429
+ S+PR+VAL+ Q+EI+++
Sbjct: 463 RSSSSPRMVALIPQEEILQS 482
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 97/188 (51%), Gaps = 7/188 (3%)
Query: 432 QVEPPGMHMIYLPYSDDIRPVEELHSDTDAVPRASDDEVKKAAALMKRIDLKDFSVCQFA 491
Q+ P GMH+IYLP++DDIR + +D + + + KA ++K + +K F +F
Sbjct: 547 QIRPRGMHVIYLPFADDIRYPNNIGVKSDGL-EIKQENIDKAKNIIKMMKIK-FDEKKFV 604
Query: 492 NPSLQRHYAVLQALALEEDDMPEIKDETVPDEEGMARPGVVKAVEEFKLSVYGDNYDEEG 551
NP LQ+HYA LQA+ALE D + E D PD + + + V+ ++F ++ Y
Sbjct: 605 NPGLQKHYASLQAIALERDKVEETVDNIQPDRKLIEK--VIDTTQDFSDGIFPVGYASTV 662
Query: 552 DVKVSEASRKRKAATENAAKECANYDWADLADKGKLKEMTVQELKLYLMAHNL--STTGR 609
S S + K+ + DW D+ G++ ++TV +LK +L N+ S+ +
Sbjct: 663 SSATSSTSSSSAKRLRD-GKDLSTMDWPDMVKSGEIIKLTVDDLKSFLSNQNIKPSSKAK 721
Query: 610 KETLISRI 617
K LI I
Sbjct: 722 KADLIDLI 729
>sp|Q1DU75|KU70_COCIM ATP-dependent DNA helicase II subunit 1 OS=Coccidioides immitis
(strain RS) GN=KU70 PE=3 SV=2
Length = 647
Score = 184 bits (466), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 163/636 (25%), Positives = 295/636 (46%), Gaps = 61/636 (9%)
Query: 24 HEATKEYVVYLVDASPKMFSTTCP---AEDQTDETHFHIAVSCIAQSLKTQIINRLYDEV 80
+++ K+ V++ ++ S M T P ++ E+ A+ C ++ +II+ D +
Sbjct: 24 YKSVKDAVLFAIEVSESML-TAAPNPTSKKARPESPATAALKCAYHLMQQRIISNPKDMI 82
Query: 81 AICFFNTRKKKNLQD---------LNAVFVFNVAEREQLDRPTARFIKEFDHIEESFEKE 131
+ + T K D ++F LD P A +KE + E E
Sbjct: 83 GVLLYGTESSKFYDDDEDGRGSLPYPHCYLFT-----DLDVPAASDVKELHAL---VEDE 134
Query: 132 IGSQYGIVSGSRENSLYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIKGAAKNDM 191
+ +V S+ N L+ A + + + +R+ + T+ D+P K +
Sbjct: 135 DRAAEILVPSKEPVSMANVLFCANQIFTTKAPNFSSRRLFIVTDNDNPHSKDKV-----L 189
Query: 192 TRTTMQRAKDAQDLGISIELLPLSPPDEEFKVSHFYADMI------GLEGDDLALF-MPS 244
RAKD DLG+ IEL P+S PD +F S FY DMI E + + +
Sbjct: 190 KSAATVRAKDLYDLGVVIELFPISTPDHDFDTSKFYDDMIYRASPTDPEAPNYSCTSTKT 249
Query: 245 AGQKLEDMKDQLRKRMFSKRIVKRISFI-----IANGLSIELNTYALIRPTVPG--AITW 297
+G + + L + SK + +R F + I ++ + + + P W
Sbjct: 250 SGADGISILNSLLSSINSKSVPRRALFSNLPLELGPEFRISVSGFLIFKRQAPARSCYVW 309
Query: 298 LDSVTNHPLKTERSFICADTGALMQE-PAKRFQPYKGENIKFSVQELSEIKRVSTGHLRL 356
L +K + + D+ +++ ++ + GE++ F+ +E S ++ +R+
Sbjct: 310 LGGEQPQIVKGVTTLVADDSAREVEKWEIRKAYKFGGEHVAFTQEEQSALRNFGDPVIRI 369
Query: 357 HGFKPLSYLKDYHNLRPSTFVFPSDKEVVGSTCIFIALHRSMLRLNRFAVAFYGNPSN-- 414
GFKP+S L + + + STF++PS+ VGST +F AL +++L+ +FA+ ++ N
Sbjct: 370 IGFKPMSSLPIWASTKHSTFIYPSEAGFVGSTRVFSALQQTLLKQKKFALVWFVARKNAA 429
Query: 415 PRLVALVAQDEIVRAG-GQVEPPGMHMIYLPYSDDIRPVEELHSDTDAVPRASDDEVKKA 473
P + AL+ +E + QV PPGM + LP++DDIR E H+ P D++++
Sbjct: 430 PVMAALIPGEEKLDDNDAQVIPPGMWIQPLPFADDIRQNPETHNIV--APEPLIDKMREI 487
Query: 474 AALMKRIDLKDFSVCQFANPSLQRHYAVLQALALEEDDMPEIKDETVPDEEGM-ARPGVV 532
+++ + + ++ NPSLQ HY +LQALAL+ED + +D+T+P + + R G
Sbjct: 488 IQVLQ-LPKGRYDPQRYPNPSLQWHYRILQALALDEDLPDQAEDKTIPKYKQIDKRAG-- 544
Query: 533 KAVEEFKLSVYGDNYDEEGDVKVSEASRKRKAATENA-----------AKECANYDWADL 581
+ V E+ + N E ++ KR A + A A+ + +
Sbjct: 545 EHVLEWGEELETQNRLLENSKPITSTLAKRPAPSRKAEGDERATKRVRAESTGDAEVKMH 604
Query: 582 ADKGKLKEMTVQELKLYLMAHNLSTTGRKETLISRI 617
+KG L ++TV LK +L++HNLS TG+K LI R+
Sbjct: 605 YEKGSLNKLTVTILKDFLLSHNLSGTGKKADLIDRV 640
>sp|Q0U5F2|KU70_PHANO ATP-dependent DNA helicase II subunit 1 OS=Phaeosphaeria nodorum
(strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=KU70 PE=3
SV=1
Length = 652
Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 166/651 (25%), Positives = 313/651 (48%), Gaps = 80/651 (12%)
Query: 24 HEATKEYVVYLVDASPKMFSTTCPAEDQTDE--THFHIAVSCIAQSLKTQIINRLYDEVA 81
++ K+ V++ +D SP M ED+ + + A+ C Q ++ +II+ D +
Sbjct: 24 YKTMKDAVLFAIDVSPSMLERPPKTEDKKADRDSPTSAALKCAYQLMQQRIISNPNDMMG 83
Query: 82 ICFFNTRKKKNLQDLNAVF--VFNVAEREQLDRPTARFIKEF-DHIEESFEKEIGSQYGI 138
I F T +K +L+D ++ F + +A+ LD P+A+ +K D +E+ E E I
Sbjct: 84 ILLFGT-EKTDLKDGDSTFQHCYLLAD---LDVPSAQDVKRLRDLVEDEEEAE-----QI 134
Query: 139 VSGSREN-SLYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIKGAAKNDMTRTTMQ 197
+ +++ S+ L+ A + + + +R+ L T+ D P + A D T +
Sbjct: 135 LKPAKDGASIATVLFCANQIFTTKAPNFSSRRLFLVTDNDYP---VNVKADKD---TAVT 188
Query: 198 RAKDAQDLGISIELLPLSPPDEEFKVSHFYADMI---GLEGDDLALFMPS------AGQK 248
RA+D DLG +I+L P+S PD+ F S FY D++ D + + + +G+
Sbjct: 189 RARDLYDLGCTIDLFPISQPDQTFDRSRFYDDLVYPTSPSDPDAPIAVATTTKVAKSGEG 248
Query: 249 LEDMKDQLRKRMFSKRIVKRISFII----ANGLSIELNTYALIRPT--VPGAITWLDSVT 302
+ +K QL + SK +R F + L I + Y LI+ W+
Sbjct: 249 ITLLK-QLISSINSKATPRRALFSLPLELGPDLRIGVKGYILIKRQEHAKSCYVWVGGDK 307
Query: 303 NHPLKTERSFICADTGALMQEPAKRFQPYK--GENIKFSVQELSEIKRV-STGHLRLHGF 359
+ + S + DT ++++ R + YK G+ I F+ E+ +I++ +R+ GF
Sbjct: 308 PQIVSSSTSHMADDTARVVEKTELR-KAYKFGGDAITFTPDEIIKIRQAFGDPIIRIIGF 366
Query: 360 KPLSYLKDYHNLRPSTFVFPSDKEVVGSTCIFIALHRSMLRLNRFAVAFYGNPSN--PRL 417
KP+S L + N +TF++PS+ + +GST +F AL + +L+ + + ++ N P L
Sbjct: 367 KPISCLPIWTNTNKATFIYPSEADFIGSTRVFSALQQKLLKSKKMGLVWFIARRNAAPIL 426
Query: 418 VALV-AQDEIVRAGGQVEPPGMHMIYLPYSDDIRPVEELHSDTDAVPRASDDEVKKAAAL 476
AL+ A+++ G Q PPG+ ++ LP++DDIR + S V + +D K +
Sbjct: 427 SALIPAEEQTNEDGEQAMPPGLWLVPLPWADDIR---QFPSPAADVLKTTDALTDKMRII 483
Query: 477 MKRIDLKD--FSVCQFANPSLQRHYAVLQALALEEDDMPEIKDETVPDEEGMAR-PGVVK 533
++++ L + ++ NP LQ Y +LQA+ALEE+ +PE PD++ M + + K
Sbjct: 484 IEQLQLPKGVYDPAKYPNPDLQWFYRILQAMALEEE-LPE-----KPDDKTMPKFRQIDK 537
Query: 534 AVEEFKLSVYGDNYD--------------------EEGDVKVSEASRKRKAATENAAKE- 572
E+ ++ YG ++ + GD K + K++ + ++
Sbjct: 538 RCGEY-ITEYGAEFEAAFAQLAVSTFPHRGKRASADPGDDKPAPKRVKKEPKVKEEGEDD 596
Query: 573 --CANYDWADLADKGKLKEMTVQELKLYLMAHNLSTTGRKETLISRILTHM 621
+ A + +KG++ + TV LK +L ST+G+K L+ R+ ++
Sbjct: 597 EGLTDEQMATVNNKGQISKQTVAVLKAWLSQRGESTSGKKADLVERVQGYL 647
>sp|O94395|KU70_SCHPO ATP-dependent DNA helicase II subunit 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pku70 PE=1 SV=1
Length = 607
Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 150/634 (23%), Positives = 294/634 (46%), Gaps = 50/634 (7%)
Query: 11 DDDEESDNEFYQEHEATKEY-VVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLK 69
++DE+ D E+ A +Y ++++++ SP M D+ + +A+ C Q
Sbjct: 2 ENDEQIDE---TENFAIGKYAILFVIEVSPSMLDPV----DEFTPSSLQMALICAYQLAA 54
Query: 70 TQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAEREQLDRPTARFIKEFDHIEESFE 129
++I D + + + T + N + + ++ D P A IK E+ F+
Sbjct: 55 QRVITNPSDIMGVLLYGTESSTG-RFANQMMLLDI------DPPDAERIKSLQSFEKDFQ 107
Query: 130 KEIGSQYGIVSGSRENSLYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIKGAAKN 189
S+ S + SL + L+ ++ ++ +KR+ L T+ D P A +
Sbjct: 108 ---FSKEKFKPCSCQVSLSSVLYHC-SVIFTTKAENFEKRLFLITDNDHPAWD---ATER 160
Query: 190 DMTRTTMQRAKDAQDLGISIELLPLSPPDEEFKVSHFYADMIGL--EGDDLALFMPSAGQ 247
D+ +QRAKD +DL I + + L PP F+++ FY+D + + D++ +
Sbjct: 161 DII---LQRAKDLRDLDIQVHPVFLDPPTHSFRINIFYSDFLYIVYGRQDVSNLVNRGQA 217
Query: 248 KLEDMKDQLRKRMFSKRIVKRISFIIANGLSIELNTYALIRPTVPGAITWLDS-----VT 302
+L+ M + + KR + + N + I + + L++ W+ +
Sbjct: 218 QLQHMLNMITALQKPKRAHFHLKMDLGNDVRIGVEAFILLKRLESAKTNWVYAKGERFAV 277
Query: 303 NHPLKTERSFICADTGALMQEPAKRFQPYKGENIKFSVQELSEIKRVSTGHLRLHGFKPL 362
P + SF A L ++ +R Y G ++ F EL++++ LR+ GF+
Sbjct: 278 AVPQSKQVSF--ATKKELKKDEIRRSYSYGGSSVVFGSDELNKVRSFEPPTLRIIGFRDF 335
Query: 363 SYLKDYHNLRPSTFVFPSDKEVVGSTCIFIALHRSMLRLNRFAVA-FYGNP-SNPRLVAL 420
S LK +H L+P+ F+ P D E++GS +F A+H+ +L N+ +A F P +NP VA+
Sbjct: 336 STLKPWHCLKPAVFLRPKDDEIIGSGAVFSAIHKKLLASNKIGIAWFVSRPNANPCFVAM 395
Query: 421 VAQDEIVRAGGQVE-PPGMHMIYLPYSDDIRPVEELHSDTDAVPRASDDEVKKAAALMKR 479
+A + E P G+ ++ LP +DDIR + ++ + ++P + ++ +++
Sbjct: 396 LATPGSIHIRDDFELPLGIFLVQLPTADDIRSLPPINPNPISMP---SNLIETMQRILRG 452
Query: 480 IDLKDFSVCQFANPSLQRHYAVLQALALEEDDMPEIKDETVPDEEGM-ARPGVVKAVEEF 538
++L+ + ++ NPSLQ HY VLQALAL+E+ + D T+P + + R G
Sbjct: 453 MELRSYQPGKYNNPSLQWHYKVLQALALDEEIPTDFVDNTLPKYKAIQKRVGEYMGDVNN 512
Query: 539 KLSVYGDNYDEEGDVKVSEASRK---RKAATENAAKECANYD------WADLADKGKLKE 589
++ Y ++ ++ +K E + +KA E + K D + + ++K
Sbjct: 513 IVAEYRNDISDKNGIKEEEEDQGPIVKKARIEKSGKPIFAEDDRLKQLYIEGVLDKEIKA 572
Query: 590 MTVQELKLYLMAHNLSTTGRKETLISRILTHMGK 623
+ V +LK L L +G+K L+ + ++ K
Sbjct: 573 LKVSQLKDILRDRGLRVSGKKADLLDNLTNYVKK 606
>sp|Q2H0I3|KU70_CHAGB ATP-dependent DNA helicase II subunit 1 OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=KU70 PE=3 SV=1
Length = 622
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 169/656 (25%), Positives = 284/656 (43%), Gaps = 81/656 (12%)
Query: 1 MELDPDDVFRDDDEESDNEFYQ-EHEATKEYVVYLVDASPKMFSTTCPAEDQT---DETH 56
M DD R D +E + E + +++ K+ V++ +D S M PA D+ ++
Sbjct: 1 MAWGGDDDRRPDADEGEEELDETDYKTQKDAVLFAIDVSSSMLQQP-PATDKKRADKDSA 59
Query: 57 FHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNA-------VFVFNVAEREQ 109
A+ C Q ++ +II + D + I F T K + ++ ++F
Sbjct: 60 IAAALKCAYQFMQQRIIAQPKDMMGILLFGTEKSRFRDEVGGRSSGYPHCYLFT-----D 114
Query: 110 LDRPTARFIKEFDHIEESFEK--EIGSQYGIVSGSRENSLYNALWVAQGLLRKGSSKTAD 167
LD P A +K + E E E+ +V S+ N L+ A + ++
Sbjct: 115 LDVPAAEDVKSLKALVEEGEDPDEV-----LVPAKEPASMANVLFCANQVFTTNAANFGS 169
Query: 168 KRILLFTNEDDPFGSIKGAAKNDMTRTTMQRAKDAQDLGISIELLPLSPPDEEFKVSHFY 227
+R+ + T+ D P G RAKD DLG+ IEL P+S + F VS FY
Sbjct: 170 RRLFIITDNDAPHGK-----DKAAKSAAAVRAKDLYDLGVVIELFPVSHEGKAFDVSKFY 224
Query: 228 ADMI----GLEGDDLALFMPSAGQKLEDMKDQLRKRMFSKRIVKR-----ISFIIANGLS 278
D+I E + +G L + + L + SK+ KR + F +A ++
Sbjct: 225 DDIIYRDPATEAISDEVKTSKSGDGLS-LLNSLISNINSKQTPKRAYFSNLHFELAPNVT 283
Query: 279 IELNTYALIRPTVPG--AITWLDSVTNHPLKTERSFICADTGALMQEPAKRFQPYKGENI 336
I + Y + P WL ++E + + T + + K+ + GE I
Sbjct: 284 ISVKGYMPLHRQQPARTCYVWLGGEQAQLAQSETIKVDSATRTVDKSEVKKAYKFGGEYI 343
Query: 337 KFSVQELSEIKRVSTGHLRLHGFKPLSYLKDYHNLRPSTFVFPSDKEVVGSTCIFIALHR 396
F +E + +K + LR+ GFKP S L + +++ S F+FPS++ VGST
Sbjct: 344 HFKPEEAASLKNLGGKVLRVIGFKPRSLLPTWASVKKSIFIFPSEEHFVGSTP------- 396
Query: 397 SMLRLNRFAVAFYGNPSNPRLVALVAQDEIVRAGGQVE--PPGMHMIYLPYSDDIRPVEE 454
R N +NP +VA++ + + P G+ + LP++DD+R V
Sbjct: 397 ---REN----------ANPIMVAIIPSRAMDDETSETPYLPAGLWLYPLPFADDVRNV-- 441
Query: 455 LHSDTDAVPRASDDEVKKAAALMKRIDLKD--FSVCQFANPSLQRHYAVLQALALEEDDM 512
D A PR +D+ K +++ + L ++ ++ NPSLQ HY VLQA+AL+ED
Sbjct: 442 ---DLAAPPRPADELTDKMREIVQNLQLPKAMYNPLKYPNPSLQWHYKVLQAMALDEDVP 498
Query: 513 PEIKDETVPDEEGMAR--PGVVKAVEEFKLSVYGD--------NYDEEGDVKVSEASRKR 562
+ D T+P + + G + +E G E+ DV A R +
Sbjct: 499 EALDDATIPKYRQIDKRVGGYLAEWKEALTEKAGGLMKSRAMKREAEDEDVSRPLAKRTK 558
Query: 563 KAATENAA-KECANYDWADLADKGKLKEMTVQELKLYLMAHNLSTTGRKETLISRI 617
AA + AA +N ++ LK+MTV ELK L + +S G+K L+ ++
Sbjct: 559 PAAPKEAAGGHMSNAQLKAALEQDTLKKMTVAELKDVLASKGVSAVGKKAELVDKL 614
>sp|Q5AVC7|KU70_EMENI ATP-dependent DNA helicase II subunit 1 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=ku70 PE=3 SV=1
Length = 629
Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 157/607 (25%), Positives = 279/607 (45%), Gaps = 67/607 (11%)
Query: 51 QTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNL-QDLNA---VFVFNVAE 106
Q+ E+ A+ C ++ +II+ D + + + T++ K +D N+ + N
Sbjct: 30 QSYESPATAALKCAYHLMQQRIISNPRDMIGVLLYGTKQSKFYDEDENSRGDLTYPNCYL 89
Query: 107 REQLDRPTARFIKEFDHI---EESFEKEIGSQYGIVSGSREN-SLYNALWVAQGLLRKGS 162
L+ P+A + E + EE+ +K I+ S E S+ N L+ + +
Sbjct: 90 FTDLNIPSAHEVLELRSLVQDEENAKK-------ILEPSNEPVSMANLLFCVNQIFTLKA 142
Query: 163 SKTADKRILLFTNEDDPFGSIKGAAKNDMTRTTMQRAKDAQDLGISIELLPLSPPDEEFK 222
+R+ + T+ D+P G K RAKD DLG++IEL P+S + EF
Sbjct: 143 PNFLSRRLFIVTDNDNPHGDNKS-----FRSAATVRAKDLYDLGVTIELFPISQIEHEFD 197
Query: 223 VSHFYADMI----GLEGDDLALFMPSAGQKLEDMKDQ------LRKRMFSKRIVKRISFI 272
S FY D+I + D A P A K+ D +D L + S+ + +R F
Sbjct: 198 TSKFYDDIIYKASPNDPDAPAYLKPDA--KMNDAQDGISLLNGLLSSINSRSVPRRAQFS 255
Query: 273 -----IANGLSIELNTYALIR--PTVPGAITWLDSVTNHPLKTERSFICADTGALMQE-P 324
+ I ++ Y L + + WL K + I D+ +++
Sbjct: 256 NMSLELGPNFKISVSGYILFKRQESARSCYVWLGGEKPQIAKGVTTQIADDSARTIEKWE 315
Query: 325 AKRFQPYKGENIKFSVQELSEIKRVSTGHLRLHGFKPLSYLKDYHNLRPSTFVFPSDKEV 384
K+ + G+ + F+ +E +K +R+ GFKPLS L + N++ F++P++++
Sbjct: 316 IKKAYKFGGDQVCFTPEEQKSLKDFGEPVIRIIGFKPLSTLPFWANIKHPLFIYPTEEDY 375
Query: 385 VGSTCIFIALHRSMLRLNRFAVAFY--GNPSNPRLVALVAQDEIVRAGG-QVEPPGMHMI 441
VGST +F AL++ +LR + A+ +Y ++P L A++A +E V G Q PPGM +I
Sbjct: 376 VGSTRVFSALYQKLLRDQKVALVWYIARKAASPVLGAMMAGEEKVDENGIQKIPPGMWII 435
Query: 442 YLPYSDDIRPVEELHSDTDAVPRASDDEVKKAAALMKRIDLKD--FSVCQFANPSLQRHY 499
LP++DD+R + A+ A + + + +++++ L + ++ NPSLQ HY
Sbjct: 436 PLPFADDVR-----QNPETALQVAPEPLIDQMRTVIQQLQLPKGVYDPQKYPNPSLQWHY 490
Query: 500 AVLQALALEEDDMPEIKDETVPDEEGM-ARPG--VVKAVEEFKLSVYGDNYDEEGDVKVS 556
+LQALAL+ED + D+T+P + R G V+ +E + D+ +
Sbjct: 491 RILQALALDEDVPEKPDDKTIPKYRQIDKRAGGYVLDWADELEKQYAKITADQPKSTTL- 549
Query: 557 EASRKRKA-----ATENAAKECANYDWADLADKGK-------LKEMTVQELKLYLMAHNL 604
A R KA A A K A ++ D+ + L ++TV L+ +L +
Sbjct: 550 -AKRPAKADNPDKAAPPAKKVKAEAGSGNIQDEVQKHFEQHTLSKLTVATLRDFLASQGR 608
Query: 605 STTGRKE 611
+T G+K
Sbjct: 609 ATAGKKA 615
>sp|P0CO50|KU70_CRYNJ ATP-dependent DNA helicase II subunit 1 OS=Cryptococcus neoformans
var. neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=KU70 PE=3 SV=1
Length = 560
Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 135/491 (27%), Positives = 219/491 (44%), Gaps = 59/491 (12%)
Query: 122 DHIEESFEKEI-GSQYGIVSGSRENSLYNALWVAQGLLRKGSSK-TADKRILLFTNEDDP 179
D E+ E EI + + S E ++ N + L R G ++ +KR+ T+ D P
Sbjct: 78 DETVETTEPEILRKTFPPIEESHEMNIANVIQTCNFLFRDGGTQLRGNKRVFWITDNDMP 137
Query: 180 FGSIKGAAKNDMTRTTMQRAKDAQDLGISIELLPLSPPDEEFKVSHFYADMIGLEGDDLA 239
G RT+ D G++ E + PD F + F+ D++ E D
Sbjct: 138 ----PGMNNRQPARTSY---GDLTTYGVTAETFFIDRPDHRFNPNIFWNDILDREAIDYN 190
Query: 240 LFMPSAGQKLEDMKDQLRKRMFSKRIVKRISFIIANGLSIELNTYALIRPTVPGAITWLD 299
P + L + D L K + K KR F + ++L I V G
Sbjct: 191 DDQPDP-EGLSSLAD-LMKDLVIKTSPKRTHFHVP----LKLGKDGEIVIGVSGCS---- 240
Query: 300 SVTNHPLKTERSFICADTGALMQEPAKRFQPYKGENIK--FSVQELSEIKRVSTGH---- 353
+ ++ G + A R+ +G+ ++ S E + K +++G
Sbjct: 241 -------------MVSEQG----KGASRYVKMRGQVVEEVQSKTEYTSAKSLNSGQWGSN 283
Query: 354 -LRLHGFKPLSYLKDYHNLRPSTFVFPSDKEVVGSTCIFIALHRSMLRLNRFAVAFYGNP 412
+++ GF+ S L+ NL+ F++P+++E GST F AL S L+ NR A+A
Sbjct: 284 PIKVLGFQAASQLRFQDNLKHPFFIYPNEEEYTGSTRTFAALLNSCLKYNRHALALCRLR 343
Query: 413 SN--PRLVALVAQDEIVRAGGQVEPPGMHMIYLPYSDDIR-PVEELHSDTDAVPRASDDE 469
SN P L+ Q+E + GQ PPG H+I LPY D IR P +++ + P A+D++
Sbjct: 344 SNHVPEFCVLIPQEEKTSSNGQEYPPGFHLIILPYKDSIRPPPKKVAEFLQSPPIATDEQ 403
Query: 470 VKKAAALMKRIDLK--DFSVCQFANPSLQRHYAVLQALALEEDDMPE-----IKDETVPD 522
+ A++KR K + + NPSL HY LQALA EED PE D+T+P
Sbjct: 404 INAMKAVIKRTRFKAAAYRPEIYPNPSLAYHYDQLQALAFEEDWDPEDPAKQALDKTMPL 463
Query: 523 EEGM-ARPGVVKAVEEFKLSVYGDNYDEEGDVKVSEASRKRKAATENAAKECANYDWADL 581
GM +R G + +EEF + DE K++ +++ KA E E + D+
Sbjct: 464 YGGMHSRAG--EFMEEFNKEIEN---DERAVEKLAAPTKRGKAEKETTVNEWDLRNIPDM 518
Query: 582 ADKGKLKEMTV 592
KG L ++++
Sbjct: 519 WKKGTLSQLSI 529
>sp|P0CO51|KU70_CRYNB ATP-dependent DNA helicase II subunit 1 OS=Cryptococcus neoformans
var. neoformans serotype D (strain B-3501A) GN=KU70 PE=3
SV=1
Length = 560
Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 135/491 (27%), Positives = 219/491 (44%), Gaps = 59/491 (12%)
Query: 122 DHIEESFEKEI-GSQYGIVSGSRENSLYNALWVAQGLLRKGSSK-TADKRILLFTNEDDP 179
D E+ E EI + + S E ++ N + L R G ++ +KR+ T+ D P
Sbjct: 78 DETVETTEPEILRKTFPPIEESHEMNIANVIQTCNFLFRDGGTQLRGNKRVFWITDNDMP 137
Query: 180 FGSIKGAAKNDMTRTTMQRAKDAQDLGISIELLPLSPPDEEFKVSHFYADMIGLEGDDLA 239
G RT+ D G++ E + PD F + F+ D++ E D
Sbjct: 138 ----PGMNNRQPARTSY---GDLTTYGVTAETFFIDRPDHRFNPNIFWNDILDREAIDYN 190
Query: 240 LFMPSAGQKLEDMKDQLRKRMFSKRIVKRISFIIANGLSIELNTYALIRPTVPGAITWLD 299
P + L + D L K + K KR F + ++L I V G
Sbjct: 191 DDQPDP-EGLSSLAD-LMKDLVIKTSPKRTHFHVP----LKLGKDGEIVIGVSGCS---- 240
Query: 300 SVTNHPLKTERSFICADTGALMQEPAKRFQPYKGENIK--FSVQELSEIKRVSTGH---- 353
+ ++ G + A R+ +G+ ++ S E + K +++G
Sbjct: 241 -------------MVSEQG----KGASRYVKMRGQVVEEVQSKTEYTSAKSLNSGQWGSN 283
Query: 354 -LRLHGFKPLSYLKDYHNLRPSTFVFPSDKEVVGSTCIFIALHRSMLRLNRFAVAFYGNP 412
+++ GF+ S L+ NL+ F++P+++E GST F AL S L+ NR A+A
Sbjct: 284 PIKVLGFQAASQLRFQDNLKHPFFIYPNEEEYTGSTRTFAALLNSCLKYNRHALALCRLR 343
Query: 413 SN--PRLVALVAQDEIVRAGGQVEPPGMHMIYLPYSDDIR-PVEELHSDTDAVPRASDDE 469
SN P L+ Q+E + GQ PPG H+I LPY D IR P +++ + P A+D++
Sbjct: 344 SNHVPEFCVLIPQEEKTSSNGQEYPPGFHLIILPYKDSIRPPPKKVAEFLQSPPIATDEQ 403
Query: 470 VKKAAALMKRIDLK--DFSVCQFANPSLQRHYAVLQALALEEDDMPE-----IKDETVPD 522
+ A++KR K + + NPSL HY LQALA EED PE D+T+P
Sbjct: 404 INAMKAVIKRTRFKAAAYRPEIYPNPSLAYHYDQLQALAFEEDWDPEDPAKQALDKTMPL 463
Query: 523 EEGM-ARPGVVKAVEEFKLSVYGDNYDEEGDVKVSEASRKRKAATENAAKECANYDWADL 581
GM +R G + +EEF + DE K++ +++ KA E E + D+
Sbjct: 464 YGGMHSRAG--EFMEEFNKEIEN---DERAVEKLAAPTKRGKAEKETTVNEWDLRNIPDM 518
Query: 582 ADKGKLKEMTV 592
KG L ++++
Sbjct: 519 WKKGTLSQLSI 529
>sp|Q6CCK2|KU70_YARLI ATP-dependent DNA helicase II subunit 1 OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=KU70 PE=3 SV=1
Length = 585
Score = 108 bits (271), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 126/520 (24%), Positives = 242/520 (46%), Gaps = 61/520 (11%)
Query: 109 QLDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRKGSSKTADK 168
+L PTA IK + E + ++G ++ + E L + + + A +
Sbjct: 94 KLGLPTAAQIKRLKRLAE--DPDLGERFKV---QEEPHLMDVFFDMNRHFINMAPNFASR 148
Query: 169 RILLFTNEDDPFGSIKGAAKNDMTRTTMQRAKDAQDLGISIELLPLSPP-DEEFKVSHFY 227
RI+ T++D P + ++D+ +T + R +D L + +E L ++P D+ F S FY
Sbjct: 149 RIIYITDDDTPTTN-----EDDINKTRV-RIEDLSHLKVKVEPLLINPSEDKTFDSSKFY 202
Query: 228 ADMIGLEGDDLALFMPSAGQKLE--DMKDQLRKRMFSKRIVKRISFIIANGLSIELNTYA 285
A L ++ + +E D+K + KR R + + I GL + + Y
Sbjct: 203 A---------LVFNEDTSVEPVEAIDLKQFINKRNVLNRSLFNVKMEIGEGLVVGVRGYL 253
Query: 286 LI---RPTVPGAITWLDSVTNHP--LKTERSFICADTG-ALMQEPAKRFQPYKGENIKFS 339
L + T W+ + P K E + ++G ++ + ++ + + + F+
Sbjct: 254 LYAEQKATSTTRKAWVYTGGEKPEIAKLESQAVTIESGRSVDKADLRKTFKFGNDYVPFT 313
Query: 340 VQELSEIKRVSTGHLRLHGFKPLSYLKDY--HNLRPSTFVFPSDKEVVGSTCIFIALHRS 397
++L++I+ +R+ GF S + H++R S F++P+D+++VGS F AL++S
Sbjct: 314 EEQLTQIRYFGEPIIRILGFHNSSDFSELFIHSVRSSMFLYPTDEKLVGSIRAFSALYQS 373
Query: 398 MLRLNRFAVAF--YGNPSNPRLVALVAQDEIVRAGGQVEPPGMHMIYLPYSDDIR--PVE 453
+ ++ A+A+ + P L L+ + E G+HM++LP++DDIR P
Sbjct: 374 LKNKDKMALAWVIVRKGAKPILALLIPSTK--------EIEGLHMVFLPFTDDIRQEPKT 425
Query: 454 ELHSDTDAVPRASDDEVKKAAALMKRIDLK-DFSVCQFANPSLQRHYAVLQALALEEDDM 512
EL S A+ + V + R+ + F ++ NP LQ HY V++A+AL+E ++
Sbjct: 426 ELVS-------AAPELVDATKNIFTRLRMPGGFESQRYPNPRLQWHYRVVRAMALQE-EV 477
Query: 513 PEI-KDETVPDEEGM-ARPGVVKAVEEFKLSVYGDNYDEEGDVKVSEASRKRKAATENAA 570
P++ +D+T P + R G A+EE+ + + D+ +E K A +
Sbjct: 478 PKVPEDKTTPKYRSIDTRVG--DAIEEWNKVLQSSSKRPAEDICKAEKKVKSSDAGPPSN 535
Query: 571 KECANYDWADLADKGKLKEMTVQELKLYLMAHNLSTTGRK 610
++ N D+ K +TV EL+ + A+N+ G K
Sbjct: 536 EQMQNMVENDIVGK-----LTVAELRAWGAANNVEPNGSK 570
>sp|Q23976|KU70_DROME ATP-dependent DNA helicase 2 subunit 1 OS=Drosophila melanogaster
GN=Irbp PE=2 SV=3
Length = 631
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 95/423 (22%), Positives = 180/423 (42%), Gaps = 39/423 (9%)
Query: 109 QLDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRKGSSKTADK 168
QL +P EF E + YG+ + + +L K K +
Sbjct: 109 QLTKPIVEHYLEF---MGGVETQFADVYGLAEPDGRGRFDLMIRLCIEMLEKCGKKLNNA 165
Query: 169 RILLFTNEDDPFGSIKGAAKNDMTRTTMQRAKDAQDLGISIELLPLSPPDEEFKVSHFYA 228
+I T+ +P S ++ + +Q+A D + ++P+ ++F FY
Sbjct: 166 KIAYVTDVREPHPS-----NSNHFQAALQKASDLEGKEFEFHVIPMV---DDFDYEPFYK 217
Query: 229 DMIGL-EGDDLALF-MPSAGQKLEDMKDQLRKRMFSKRIVKRISFIIANGLSIELNTYAL 286
+ I L +L F +P A E + D+ K+ F +R + SF + LS+ + Y
Sbjct: 218 EFITLSRAIELDAFQVPDAQMLREILSDRKLKQDFLRRCLGHFSFYLGPNLSMSVQYYNY 277
Query: 287 I-RPTVPGAITWLDSVTNHPLKTERSFICA---DTGALMQEPAKRFQPYKG--------E 334
R P + L N ++T+R D G+ E + + G
Sbjct: 278 FQRRAYPRKVQILRR-DNSVVRTKRVITVQKQKDDGSQDIEHEYQIKVTGGWYTCNVGER 336
Query: 335 NIKFSVQELSEIKRVSTGHLRLHGFKPLSYLKDYHNLRPSTFVFPSDKEVVGSTCIFIAL 394
+++ S+ +L+ ++ + + L GFK S L + ++P+ F++P D+ ++GS +F AL
Sbjct: 337 DLRISMDQLNRVRNLHKPQMMLLGFKHRSSLPEVSYIKPANFMYPDDQSIIGSKRLFRAL 396
Query: 395 HRSMLRLNRFAVAFY--GNPSNPRLVALV-------AQDEIVRAGGQVEPPGMHMIYLPY 445
L ++ A+ + S PR VALV +D+ R+ + G ++YLP
Sbjct: 397 WERCLVRDKIAICLFMCKRKSIPRYVALVPVEAPDNGEDKNYRS--LLCGDGFKIVYLPE 454
Query: 446 SDDIRPVEELHSDTDAVPRASDDEVKKAAALMKRIDLKDFSVCQFANPSLQRHYAVLQAL 505
+ IR + +L + A + +V+ ++K++ + D+ +PSL A L AL
Sbjct: 455 AKHIRHL-DLQDWNNTENTADEQKVEFFQKIIKKLRV-DYQPNLINDPSLDALQANLLAL 512
Query: 506 ALE 508
+L+
Sbjct: 513 SLD 515
>sp|Q6CUB4|KU70_KLULA ATP-dependent DNA helicase II subunit 1 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=KU70 PE=3 SV=1
Length = 592
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 110/543 (20%), Positives = 241/543 (44%), Gaps = 55/543 (10%)
Query: 10 RDDDEESDNEFYQEHEATKEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLK 69
RDDD+ESD++ ++ +EA + +V+ + +P M+ + D + + + L
Sbjct: 17 RDDDKESDHKKWRRYEA-HDGIVFCIQLTPTMYLSN---PDLGGKIQLLEILDSL-NDLM 71
Query: 70 TQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAEREQLDRPTARFIKEFDHIEESFE 129
+Q++ + C+ N +D NV E L + +K + E E
Sbjct: 72 SQLVVVMPSTAVGCYIYNCSHPNAED-------NVYELIPLRDVNYKNMKRVSDLLEDIE 124
Query: 130 KE---IGSQYGIVSGSRENSLYNALW-VAQGLLR--KGSSKTADKRILLFTNEDDPFGSI 183
++ + + I + L L V + L+ +G + +K+I FT++D P +
Sbjct: 125 QDRILLKDEIPIADPNNPIELSPVLIKVRETFLQPIEGQKQLTNKKIFFFTDDDKPAEFL 184
Query: 184 KGAAKNDMTRTTMQRAKDAQDLGISIELLPLSPPDEEFKVSHFYADMI--GLEGDDLALF 241
+++ + + D D I+ + D+ F S YAD++ G + ++ +
Sbjct: 185 NVDSRSRLRKV----VDDLYDYYINFVTFFIGSEDKPFDDS-MYADILKWGSKINEAQSW 239
Query: 242 MPSAGQKLEDM-----KDQLRKRMFSKRIVKRISFIIAN--GLSIELNTYALIRPTVPGA 294
+ S G + K ++++ KRI R ++ L + +N Y ++ +PG+
Sbjct: 240 LSSHGPSTNPINASYIKSKVKRTKEIKRIKFRCPLMLDERADLVVSVNGYTIVSHEIPGS 299
Query: 295 ---ITWLDSVTNHPLKTERSFICADTG-ALMQEPAKRFQPYKGENIKFSVQELSEIKRVS 350
+ + + + R ++ A+TG A+ + + E I+ + E +I+
Sbjct: 300 KYKLVYANGSVRREAYSHREYLDAETGEAVDNSQLSKVYTFGDEIIELTEDENLKIQSGY 359
Query: 351 TGH---LRLHGFKPLSY-LKDYHNLRPSTFVFPSDKEVVGSTCIFIALHRSMLRLNRFAV 406
+ H L+L GF+ L Y N+ FV P++++ GS +L+R+ML + A+
Sbjct: 360 SEHESFLKLIGFRSTEQCLHYYDNIDVPAFVVPNEEDYAGSIKTLASLYRTMLFKKKSAM 419
Query: 407 AFYG-NPSNPRLVALVAQDEIVRAGGQVEPPGMHMIYLPYSDDIRPVEELHSDTDAVPRA 465
+ P++P + ++ + + G ++ +P+ +++R + + + + A+ +
Sbjct: 420 VWGKLRPNSPPSMFVLTP-----SSKKDYNQGFYLYKVPFMEEVRKLPDFLNHS-ALIES 473
Query: 466 SDDEV--KKAAALMKRIDLKD-FSVCQFANPSLQRHYAVLQALALEEDDMPEIKDETVPD 522
D +V K L+ +LK+ + F NP+LQ+H+ +L+ L+ + D++ P+
Sbjct: 474 DDYKVMSKVTETLINFFNLKNGYRPSDFHNPALQKHFKILREYLLQIE-----VDKSKPE 528
Query: 523 EEG 525
+EG
Sbjct: 529 DEG 531
>sp|P32807|KU70_YEAST ATP-dependent DNA helicase II subunit 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YKU70 PE=1 SV=2
Length = 602
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 91/397 (22%), Positives = 164/397 (41%), Gaps = 41/397 (10%)
Query: 161 GSSKTADKRILLFTNEDDPFGSIKGAAKNDMTRTTMQRAKDAQDLGISIELLPLSPPDEE 220
G + ++KR+ LFT+ D P + + + R T+ D D ++ + D+
Sbjct: 159 GQKQLSNKRVFLFTDIDKPQEAQDIDERARLRRLTI----DLFDNKVNFATFFIGYADKP 214
Query: 221 FKVSHFYADMIGL-----EGDDLALFMPSAGQKLEDMKDQLRKRMFSKRIVKRISFIIAN 275
F + FY+D++ L E L K D K ++ R+ K+ VKRI F
Sbjct: 215 FD-NEFYSDILQLGSHTNENTGLDSEFDGPSTKPIDAK-YIKSRILRKKEVKRIMFQCPL 272
Query: 276 GLSIELN---------TYALIRPTVPGAITWLDSVTNHPLKTERSFICADTGALMQEPAK 326
L + N Y + V + + ++R F+ TG +
Sbjct: 273 ILDEKTNFIVGVKGYTMYTHEKAGVRYKLVYEHEDIRQEAYSKRKFLNPITGEDVTGKTV 332
Query: 327 RFQPYKGENIKFSVQELSEIKRVST---GHLRLHGFKPLS-YLKDYHNLRPSTFVFPSDK 382
+ PY +I S + + T L++ GF+ S + ++N+ S+F+ P +
Sbjct: 333 KVYPYGDLDINLSDSQDQIVMEAYTQKDAFLKIIGFRSSSKSIHYFNNIDKSSFIVPDEA 392
Query: 383 EVVGSTCIFIALHRSMLRLNRFAVAFYGNPSN--PRLVALVAQDEIVRAGGQVEPPGMHM 440
+ GS +L + + + ++ A+ + SN P L L V+ + G ++
Sbjct: 393 KYEGSIRTLASLLKILRKKDKIAILWGKLKSNSHPSLYTLSPSS--VKDYNE----GFYL 446
Query: 441 IYLPYSDDIRPVEELHSDTDAVPRASD-DEVKKAA-ALMKRIDLKD-FSVCQFANPSLQR 497
+P+ D+IR L S D D D +KK ++M +L+D ++ F NP LQ+
Sbjct: 447 YRVPFLDEIRKFPSLLSYDDGSEHKLDYDNMKKVTQSIMGYFNLRDGYNPSDFKNPLLQK 506
Query: 498 HYAVLQALALE------EDDMPEIKDETVPDEEGMAR 528
HY VL L+ E++ P K + + E+ R
Sbjct: 507 HYKVLHDYLLQIETTFDENETPNTKKDRMMREDDSLR 543
>sp|Q338N2|C3H62_ORYSJ Zinc finger CCCH domain-containing protein 62 OS=Oryza sativa
subsp. japonica GN=Os10g0391300 PE=2 SV=2
Length = 702
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 581 LADKGKLKEMTVQELKLYLMAHNLSTTGRKETLISRI 617
L G+L+++ V E K YL H L +G KE L++RI
Sbjct: 126 LMHDGQLEKLKVYECKAYLRMHKLRLSGNKEVLLTRI 162
>sp|Q6X1D1|VGLG_KHUV Glycoprotein G OS=Khujand virus GN=G PE=1 SV=1
Length = 526
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 160 KGSSKTADKRILLFTNEDDPFGSIKGAAKNDMTRTTMQRAKDAQDLGI-SIELLPLSPPD 218
KG T D ++ F +E + S+KG+ K + + R D + I + E PPD
Sbjct: 215 KGKRATKDGKLCGFVDERGLYKSLKGSCKLKLCGVSGLRLMDGSWVSIQNHEEAKWCPPD 274
Query: 219 EEFKVSHFYADMIGLEGDDLALFMPSAGQKLEDMKDQLRKRMFSKRI-VKRISFI 272
+ V F++D I L + +K E+ D L M +K I +R+S +
Sbjct: 275 QLVNVHDFHSDEIE------HLIVEELVKKREECLDALESIMTTKSISFRRLSHL 323
>sp|A7MB27|RHG36_BOVIN Rho GTPase-activating protein 36 OS=Bos taurus GN=ARHGAP36 PE=2
SV=1
Length = 530
Score = 34.3 bits (77), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 8/121 (6%)
Query: 53 DETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNA----VFVFNVAERE 108
D + H + + + + + L D++ + F T K L+A V++ +
Sbjct: 266 DSQNVHDVAALLKEFFRDMKDSLLPDDLYMSFLQTATLKPQDQLSALQLLVYLMPPCHSD 325
Query: 109 QLDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRKGSSKTADK 168
L+R +K + E+ E IG +VSG+R S AL LL+KG+S +
Sbjct: 326 TLER----LLKVLHKVAENCEDSIGIDGQLVSGNRMTSTNLALVFGSALLKKGASAKRES 381
Query: 169 R 169
R
Sbjct: 382 R 382
>sp|Q82PM3|Y879_STRAW Probable DNA repair protein SAV_879 OS=Streptomyces avermitilis
(strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804
/ NRRL 8165 / MA-4680) GN=SAV_879 PE=3 SV=1
Length = 319
Score = 32.7 bits (73), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 104/238 (43%), Gaps = 29/238 (12%)
Query: 341 QELSEIKRVSTGHLRLHGFKPLSYLKDYHNLRPSTFVFPSDKEVVGSTCIFIALHRSMLR 400
+EL E+ + + + F PL+ + D + ++ P D +V + L +++ R
Sbjct: 78 EELRELPLPTAKAIEIEAFVPLASI-DPMGIGEGYYLQP-DGQVAAKP--YKLLRQALER 133
Query: 401 LNRFAVAFYGNPSNPRLVALVAQDEIVRAGGQVEPPGMHMIYLPYSDDIRPVEELHSDTD 460
++ AVA Y RL L ++E + +H + P D+IR EL
Sbjct: 134 SSKVAVAKYAWSGRERLGMLRVREEAI---------VLHAMRWP--DEIRDPSELAPQGI 182
Query: 461 AVPRASDDEVKKAAALMKRIDLKDFSVCQFANPSLQRHYAVLQALALEEDDMPEIKDETV 520
+ S+DE+ +A L+ R+ D +F + + + V++A +E P ET
Sbjct: 183 EL---SEDEITEAEQLIDRLTRDDLEGEEFQDHYTEALHEVIEAK--QEGHAPPEARET- 236
Query: 521 PDEEGMARPG-VVKAVEEFKLSVYGD--NYDEEGDVKVSEASRKRKAATENAAKECAN 575
+EE PG V+ + + SV + E G+ V E RK+ AA + A ++ A
Sbjct: 237 -EEE----PGKVLDLMAALRQSVAKAKASRGESGEADVHELPRKKTAARKTAKQQPAK 289
>sp|P45951|ARP_ARATH Apurinic endonuclease-redox protein OS=Arabidopsis thaliana GN=ARP
PE=2 SV=2
Length = 536
Score = 32.7 bits (73), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 583 DKGKLKEMTVQELKLYLMAHNLSTTGRKETLISRILTHM 621
D+ +++ MTVQEL+ L + GRK+ LIS + HM
Sbjct: 93 DRKEIEAMTVQELRSTLRKLGVPVKGRKQELISTLRLHM 131
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 233,497,164
Number of Sequences: 539616
Number of extensions: 10099840
Number of successful extensions: 29410
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 29285
Number of HSP's gapped (non-prelim): 71
length of query: 623
length of database: 191,569,459
effective HSP length: 124
effective length of query: 499
effective length of database: 124,657,075
effective search space: 62203880425
effective search space used: 62203880425
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)