Query 006975
Match_columns 623
No_of_seqs 209 out of 883
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 13:54:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006975.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006975hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jey_A KU70; double-strand DNA 100.0 5E-110 2E-114 944.6 54.0 592 1-623 1-609 (609)
2 1jey_B KU80; double-strand DNA 100.0 1.6E-75 5.6E-80 658.1 42.8 476 26-544 5-538 (565)
3 1jjr_A KU70, thyroid autoantig 99.3 1.5E-12 5E-17 118.4 5.8 51 573-623 47-97 (151)
4 1jjr_A KU70, thyroid autoantig 99.0 2.3E-11 7.9E-16 110.5 0.0 51 573-623 101-151 (151)
5 4b4t_W RPN10, 26S proteasome r 99.0 4.9E-09 1.7E-13 105.6 14.6 145 28-217 3-147 (268)
6 2x5n_A SPRPN10, 26S proteasome 98.9 3.1E-08 1.1E-12 95.4 14.7 146 28-218 2-147 (192)
7 2do1_A Nuclear protein HCC-1; 98.8 2.5E-09 8.5E-14 80.2 4.5 37 586-622 9-45 (55)
8 1zrj_A E1B-55KDA-associated pr 98.8 6.8E-09 2.3E-13 76.2 5.2 38 585-622 8-45 (50)
9 1h1j_S THO1 protein; SAP domai 98.8 5.5E-09 1.9E-13 77.1 4.6 37 586-622 4-40 (51)
10 2rnn_A E3 SUMO-protein ligase 98.8 2.7E-09 9.1E-14 91.6 3.2 38 585-622 35-72 (114)
11 2kvu_A MKL/myocardin-like prot 98.7 1.2E-08 4E-13 80.8 5.0 37 586-622 25-61 (75)
12 1q0p_A Complement factor B; VO 98.3 9.1E-06 3.1E-10 79.0 15.1 165 28-233 15-192 (223)
13 3ibs_A Conserved hypothetical 98.3 9E-06 3.1E-10 78.9 14.9 141 27-217 10-150 (218)
14 4hqo_A Sporozoite surface prot 98.2 1.3E-05 4.4E-10 80.9 14.7 156 29-232 19-176 (266)
15 1ijb_A VON willebrand factor; 98.2 4.8E-06 1.6E-10 80.3 9.9 143 28-216 13-156 (202)
16 2xgg_A Microneme protein 2; A/ 98.2 3.1E-05 1.1E-09 73.0 15.0 142 28-216 17-161 (178)
17 4hqf_A Thrombospondin-related 98.1 5.1E-05 1.7E-09 77.1 16.6 153 28-232 21-179 (281)
18 1shu_X Anthrax toxin receptor 98.1 6.6E-05 2.2E-09 70.5 14.8 137 29-215 7-143 (182)
19 4fx5_A VON willebrand factor t 98.0 0.00044 1.5E-08 75.4 22.5 151 28-232 77-231 (464)
20 1v7p_C Integrin alpha-2; snake 98.0 0.00011 3.8E-09 70.4 15.6 137 29-215 7-146 (200)
21 1atz_A VON willebrand factor; 98.0 0.00019 6.6E-09 68.0 16.8 136 29-216 6-145 (189)
22 1rrk_A Complement factor B; BB 98.0 0.00014 4.7E-09 79.8 18.0 160 30-233 3-178 (497)
23 2odp_A Complement C2; C3/C5 co 98.0 5.1E-05 1.7E-09 83.6 13.6 149 28-216 9-172 (509)
24 3n2n_F Anthrax toxin receptor 98.0 0.00011 3.6E-09 69.2 13.9 136 30-215 9-146 (185)
25 1pt6_A Integrin alpha-1; cell 98.0 0.00015 5.1E-09 70.2 15.3 138 29-216 8-148 (213)
26 3hrz_D Complement factor B; se 97.9 9.6E-05 3.3E-09 85.2 15.1 164 30-233 245-420 (741)
27 2b2x_A Integrin alpha-1; compu 97.9 0.00013 4.6E-09 71.1 13.8 138 29-216 23-163 (223)
28 2x31_A Magnesium-chelatase 60 97.7 0.00017 5.9E-09 68.2 10.9 111 28-180 5-115 (189)
29 1n3y_A Integrin alpha-X; alpha 97.6 4.9E-05 1.7E-09 72.5 6.0 138 29-216 10-150 (198)
30 1mf7_A Integrin alpha M; cell 97.4 0.00033 1.1E-08 66.5 8.4 139 28-216 5-146 (194)
31 3zqk_A VON willebrand factor; 97.3 0.0004 1.4E-08 66.5 7.1 144 29-232 22-169 (199)
32 1mjn_A Integrin alpha-L; rossm 96.9 0.0019 6.6E-08 60.6 7.5 130 30-216 4-136 (179)
33 2ww8_A RRGA, cell WALL surface 96.9 0.0032 1.1E-07 73.6 10.8 137 30-178 226-390 (893)
34 3k6s_A Integrin alpha-X; cell 96.2 0.0066 2.3E-07 72.8 7.9 137 30-216 132-271 (1095)
35 2rno_A Putative DNA-binding pr 96.2 0.0022 7.5E-08 52.9 2.5 39 583-621 13-51 (110)
36 3rag_A Uncharacterized protein 95.4 0.063 2.1E-06 52.7 10.0 96 27-161 133-228 (242)
37 1yvr_A RO autoantigen, 60-kDa 95.1 0.27 9.2E-06 54.3 15.2 106 29-180 369-474 (538)
38 2out_A MU-like prophage flumu 94.6 0.015 5E-07 50.7 2.4 36 585-620 87-124 (131)
39 2nvo_A RO sixty-related protei 94.6 0.33 1.1E-05 53.6 13.9 137 28-217 362-500 (535)
40 2iue_A Pactolus I-domain; memb 93.8 0.48 1.6E-05 45.6 11.5 115 30-182 5-119 (212)
41 2jx3_A Protein DEK; alpha heli 93.3 0.043 1.5E-06 48.7 3.0 40 584-623 69-108 (131)
42 1v66_A Protein inhibitor of ac 93.2 0.091 3.1E-06 39.9 4.1 37 586-622 10-46 (65)
43 3fcs_B Integrin beta-3; beta p 92.0 1.3 4.6E-05 50.0 13.8 45 31-87 114-158 (690)
44 1y02_A CARP2, FYVE-ring finger 89.6 0.28 9.6E-06 42.8 4.0 40 583-622 72-113 (120)
45 2ld7_A Histone deacetylase com 87.4 0.79 2.7E-05 38.0 5.1 37 586-622 23-61 (94)
46 3skq_A Mitochondrial distribut 87.0 0.72 2.5E-05 45.0 5.5 41 581-622 139-180 (249)
47 3t3p_B Integrin beta-3; integr 86.8 20 0.00067 38.5 17.0 45 31-87 114-158 (472)
48 1m2o_A SEC23, protein transpor 85.7 44 0.0015 38.2 20.5 71 144-216 259-350 (768)
49 2nut_A Protein transport prote 85.6 40 0.0014 38.6 20.0 72 143-216 264-356 (769)
50 2do5_A Splicing factor 3B subu 84.7 1.7 5.8E-05 31.1 4.9 37 585-621 6-42 (58)
51 3vi3_B Integrin beta-1; beta p 80.5 7.1 0.00024 41.6 10.2 45 31-87 125-169 (454)
52 3v4v_B Integrin beta-7; cell a 79.5 20 0.0007 38.6 13.4 46 30-87 134-179 (503)
53 1pcx_A Protein transport prote 79.4 3.2 0.00011 48.0 7.8 164 28-216 187-388 (810)
54 2w51_A Protein arMet; MANF, CD 77.8 0.4 1.4E-05 43.1 -0.3 39 583-621 104-144 (158)
55 1m2v_B SEC24, protein transpor 76.5 3 0.0001 48.9 6.3 163 29-216 304-504 (926)
56 3eh2_A Protein transport prote 73.0 56 0.0019 37.3 15.7 164 29-216 174-373 (766)
57 2riq_A Poly [ADP-ribose] polym 71.8 3.1 0.00011 37.9 3.9 37 585-621 36-73 (160)
58 1zbh_A 3'-5' exonuclease ERI1; 70.4 2.2 7.5E-05 43.1 3.0 42 581-622 20-61 (299)
59 3k6s_B Integrin beta-2; cell r 70.0 5.3 0.00018 45.1 6.2 46 30-87 106-151 (687)
60 3efo_B SEC24 related gene fami 61.6 1.9E+02 0.0064 33.0 17.0 165 29-216 178-377 (770)
61 3eh1_A Protein transport prote 57.4 44 0.0015 38.1 10.8 159 28-216 160-352 (751)
62 1zbu_A ERI-1 homolog, 3'-5' ex 45.5 4.4 0.00015 41.9 0.0 42 581-622 70-111 (349)
63 3rag_A Uncharacterized protein 35.6 51 0.0017 32.0 5.8 41 165-216 8-48 (242)
64 3q4o_A Uncharacterized protein 32.3 67 0.0023 30.0 5.8 40 467-506 66-109 (196)
65 1q1v_A DEK protein; winged-hel 24.8 73 0.0025 24.6 3.9 52 571-622 14-67 (70)
66 3ewt_E Tumor necrosis factor r 24.7 38 0.0013 20.7 1.7 16 589-604 10-25 (25)
67 4fid_A G protein alpha subunit 20.9 1.4E+02 0.0047 30.4 6.3 58 20-88 177-237 (340)
68 1azs_C GS-alpha; complex (lyas 20.3 1.4E+02 0.0047 31.2 6.3 59 20-88 233-293 (402)
No 1
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=100.00 E-value=4.7e-110 Score=944.60 Aligned_cols=592 Identities=31% Similarity=0.485 Sum_probs=445.0
Q ss_pred CCCCC--CCCCCCCc--ccchhhh--hhhhc-ccceEEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhh
Q 006975 1 MELDP--DDVFRDDD--EESDNEF--YQEHE-ATKEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQII 73 (623)
Q Consensus 1 ~~~~~--~~~~~~~~--~~~~~~~--~~~~~-~~ke~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi 73 (623)
|+-|+ ++.|+||+ +|+||+. ..+|. ++||+||||||||+||+.+.. +...|+|++|++||.++|++||+
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ke~ivf~IDvS~SM~~~d~----~~~~srl~~a~~~v~~~i~~kii 76 (609)
T 1jey_A 1 MSGWESYYKTEGDEEAEEEQEENLEASGDYKYSGRDSLIFLVDASKAMFESQS----EDELTPFDMSIQCIQSVYISKII 76 (609)
T ss_dssp ---------------------------------CEEEEEEEEECSGGGGCCCS----SSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccccccccccccccchhhhhccccccccCceEEEEEEECCHHHcCCCC----CCCCChHHHHHHHHHHHHHHhhC
Confidence 56687 68899866 3333332 24564 799999999999999999764 24579999999999999999999
Q ss_pred ccCCCeEEEEEEecCCCCCCCCCCcEEEecccccccCCCCChHHHHHHHHHHHh-HhhhhcccccccCCCCCCCHHHHHH
Q 006975 74 NRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAEREQLDRPTARFIKEFDHIEES-FEKEIGSQYGIVSGSRENSLYNALW 152 (623)
Q Consensus 74 ~~~~D~vgivl~gt~~t~n~~~~~~i~~l~~~~~~~l~~p~~~~ik~L~~l~~~-~~~~~~~~~~~~~~~~~~~l~daL~ 152 (623)
++++|+||||+|||+.++|+.+|+|||++ ++|+.|+++.++.|.++++. ....+...+|. ...++|.+|||
T Consensus 77 ~~~~D~vGlVlfgt~~t~n~l~~d~i~v~-----~~L~~~~~~~ik~l~~l~~~~~~~~~~~~~g~---~~~t~l~daL~ 148 (609)
T 1jey_A 77 SSDRDLLAVVFYGTEKDKNSVNFKNIYVL-----QELDNPGAKRILELDQFKGQQGQKRFQDMMGH---GSDYSLSEVLW 148 (609)
T ss_dssp TTCCCEEEEEEESCSSCBSTTCCTTEEEE-----EEEECCCHHHHHHHHTTSHHHHHHHHHHHHCC---SCCCCHHHHHH
T ss_pred CCCCCeEEEEEEccCCCCCcCCCCCeEEE-----ecCCCCCHHHHHHHHHHhhcccchhhhhhcCC---CCCCCHHHHHH
Confidence 99999999999999999999999999999 99999999999999998752 11122223332 35789999999
Q ss_pred HHHHHHhcCCCCCCCcEEEEEeCCCCCCCCCccCcchhhHHHHHHHHHHhHhcCceEEEeeCCCCCCCCcccchhhhhcc
Q 006975 153 VAQGLLRKGSSKTADKRILLFTNEDDPFGSIKGAAKNDMTRTTMQRAKDAQDLGISIELLPLSPPDEEFKVSHFYADMIG 232 (623)
Q Consensus 153 ~a~~~f~~~~~~~~~krI~l~Tn~d~P~~~~~~~~d~~~~~~~~~~a~dL~~~gI~i~l~~i~~~~~~Fd~~~fy~~i~~ 232 (623)
+|+++|+++++++.+||||||||+++|++. +...+..+.+.|++|++.||.|.+|+|+.++. ||.++||.+++.
T Consensus 149 ~a~~~f~~~~~k~~~k~IiL~TDg~~p~~~-----~~~~~~~~~~~a~~l~~~gI~i~~igig~~~~-fd~~~fy~~~~~ 222 (609)
T 1jey_A 149 VCANLFSDVQFKMSHKRIMLFTNEDNPHGN-----DSAKASRARTKAGDLRDTGIFLDLMHLKKPGG-FDISLFYRDIIS 222 (609)
T ss_dssp HHHHHHHTCSSCEEEEEEEEEESCSCTTTT-----CHHHHHHHHHHHHHHHHHTEEEEEEEBCCTTC-CCTTTTGGGTCC
T ss_pred HHHHHHHhhchhhcCCEEEEEcCCCCCCCC-----chHHHHHHHHHHHHHHhcCcEEEEEecCCCCc-cchhhhhhhhhc
Confidence 999999987667789999999999999987 55556778889999999999999999998765 999999999987
Q ss_pred cCCccccccCCCccccHHHHHHHHHhhhhcceeeeeeeEEecCCceEEEEEeeeecccCCCcEeEecCCCCCCceeeeEE
Q 006975 233 LEGDDLALFMPSAGQKLEDMKDQLRKRMFSKRIVKRISFIIANGLSIELNTYALIRPTVPGAITWLDSVTNHPLKTERSF 312 (623)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~L~~~i~~k~~~kR~~~~~~l~lg~~~~I~V~~Y~~~~~~~~~~~~~~~~~~~~~vk~~t~~ 312 (623)
...++...........+++|++++++|.+++|++|+++|+||++++|||++|+++++++++++++++++++++|+++++|
T Consensus 223 ~~~~~~~~~~~~~~~~l~~ll~~i~~k~~~~R~~~~g~l~lg~~v~I~V~~Y~~t~~~~~~~~~~l~~~~~~~V~~~~~~ 302 (609)
T 1jey_A 223 IAEDEDLRVHFEESSKLEDLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVKTKTRT 302 (609)
T ss_dssp --------CCCCCBCSHHHHHHHHHHHHSCCCCSEEEEEESSSSCEEEEEEECSBCCCCCCCCEEEETTTTEEEEEEEEE
T ss_pred cccccchhcccCchhhHHHHHHHHHhhhccceeeeeeeeEECCCCEEEEEEEeecccccCCCcEEEcccCCccceEEEEE
Confidence 65443322233344678999999999999999999999999999999999999999998899999999999999999999
Q ss_pred eeCCcCccc-cccceeeEecCCeeeecCHHHHHHhhccCCCcEEEEeeecCCCCCcccccCCcEEEecCCCCCcCcHHHH
Q 006975 313 ICADTGALM-QEPAKRFQPYKGENIKFSVQELSEIKRVSTGHLRLHGFKPLSYLKDYHNLRPSTFVFPSDKEVVGSTCIF 391 (623)
Q Consensus 313 ~~~dt~~~~-~~~~~k~y~yG~~~V~~~~ee~~~ik~~~~~~l~llGF~~~~~i~~~~~~~~s~fi~Pd~~~~~gS~~~f 391 (623)
+|++||+.+ +++++|||+|||++|+|+++|++.++..++|+|+|+||+|+++|+++|++++||||+|++..+.||+++|
T Consensus 303 ~~~~~g~~V~~~di~kgy~yg~~~V~~~~ee~~~~k~~~~~~i~ilgFv~~~~i~~~~~~~~~~~l~P~~~~~~~s~~af 382 (609)
T 1jey_A 303 FNTSTGGLLLPSDTKRSQIYGSRQIILEKEETEELKRFDDPGLMLMGFKPLVLLKKHHYLRPSLFVYPEESLVIGSSTLF 382 (609)
T ss_dssp EETTTCCBCCGGGEEEEEEETTEEEEECHHHHHHTTCCSCSEEEEEEEEEGGGSCGGGCCSCCEEEEECTTTEETHHHHH
T ss_pred EeCCCCCccChhhceeeeeeCCeeeccCHHHHHHHhccCCCceEEEeecchHhCchhhccCCceEEecCCCCccchHHHH
Confidence 999999865 6999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHHHHHHhcCcEEEEEe--cCCCCceEEEEEeehhhccc-CCCCCCCcEEEEecCCccCCCCCccCCCCCCCCCCCCHH
Q 006975 392 IALHRSMLRLNRFAVAFY--GNPSNPRLVALVAQDEIVRA-GGQVEPPGMHMIYLPYSDDIRPVEELHSDTDAVPRASDD 468 (623)
Q Consensus 392 saL~~am~~~~kvaI~r~--r~~s~P~lvaL~P~~~~~~~-~~q~~p~g~~li~LPfadDiR~~~~~~~~~~~~~~~~~e 468 (623)
+||++||.++++|||||| |.++.|+||||+|+.+..++ ++|..|+||++++|||+||||.++++. ...++++
T Consensus 383 saL~~al~~~~kvaIar~v~r~~~~p~l~aL~P~~~~~d~~~~q~~~~gl~l~~Lpf~ddvR~~~f~~-----~~~~~~~ 457 (609)
T 1jey_A 383 SALLIKCLEKEVAALCRYTPRRNIPPYFVALVPQEEELDDQKIQVTPPGFQLVFLPFADDKRKMPFTE-----KIMATPE 457 (609)
T ss_dssp HHHHHHHHHTTEEEEEEEECSSSCCCEEEEEEEECCEECTTCCEEECSEEEEEECCCGGGBCCCCCCC-----CCCCCHH
T ss_pred HHHHHHHHhcCcEEEEEEEecCCCCCEEEEEeCccccccccCCcCCCCeeEEEecCccccccCCCCcc-----cCCCCHH
Confidence 999999999999999998 89999999999999875443 557789999999999999999987643 5679999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHhhcCcCCCCCCCCCCCCChhhhccccchHHHHHHHHhhcCCCCC
Q 006975 469 EVKKAAALMKRIDLKDFSVCQFANPSLQRHYAVLQALALEEDDMPEIKDETVPDEEGMARPGVVKAVEEFKLSVYGDNYD 548 (623)
Q Consensus 469 q~~~a~~lI~~l~l~~y~p~~~~NP~lq~~y~~lea~Al~~~~~~~~~D~t~P~~~~i~~~~~~~~i~~fk~~~~~~~~~ 548 (623)
|+++|++||++|+++ |+|+.|+||++|+||++|+++|++++.|+++.|.|+|+++.|.++++ +++++|++++|+..++
T Consensus 458 ~l~~a~~lI~~m~~~-~~p~~~~np~lq~~~~~i~a~al~~~~~~~~~d~t~p~~~~~~~~~~-~~~~~~k~~~f~~~~~ 535 (609)
T 1jey_A 458 QVGKMKAIVEKLRFT-YRSDSFENPVLQQHFRNLEALALDLMEPEQAVDLTLPKVEAMNKRLG-SLVDEFKELVYPPDYN 535 (609)
T ss_dssp HHHHHHHHHHHTBCC-CCTTSCCCHHHHHHHHHHHHHHTTCSSCCCCCCTTSCCHHHHHHHHT-THHHHHHHHHSCSCC-
T ss_pred HHHHHHHHHHhcccC-CCcccCCCHHHHHHHHHHHHHhcCCCCCCCCCCcccCCHHHHHHHHH-HHHHHHHHhhcccccc
Confidence 999999999999998 99999999999999999999999999998899999999999988888 8999999998888887
Q ss_pred Ccccc-cc-chh---hhchhhhhhhhhhccchHHHHHHHHcCCcccccHHHHHHHHHHcCCCCCCChHHHHHHHHHhhcC
Q 006975 549 EEGDV-KV-SEA---SRKRKAATENAAKECANYDWADLADKGKLKEMTVQELKLYLMAHNLSTTGRKETLISRILTHMGK 623 (623)
Q Consensus 549 ~~~~~-~~-~~~---~~k~~~~~~~~~~~~~~~~~~~~~~~g~l~kltv~~LK~~l~~~~~~~~gkK~dLi~~i~~~l~~ 623 (623)
+.... ++ +.. +.||. ..+.+..+|+++|++|+|++|||+|||+||+++|++++|||||||+||++||+|
T Consensus 536 ~~~~~~~~k~~~~~~~~k~~------k~~~~~~~~~~~~~~g~l~~~tv~~Lk~~l~~~~~~~~~kK~~li~~i~~~~~~ 609 (609)
T 1jey_A 536 PEGKVTKRKHDNEGSGSKRP------KVEYSEEELKTHISKGTLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQD 609 (609)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhccccccccccCCccccc------cCcCCHHHHHHHHHCCCchhccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcC
Confidence 65411 11 100 01111 124478899999999999999999999999999999999999999999999986
No 2
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=100.00 E-value=1.6e-75 Score=658.07 Aligned_cols=476 Identities=18% Similarity=0.223 Sum_probs=387.9
Q ss_pred ccceEEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEecCCCCCCC----CCCcEEE
Q 006975 26 ATKEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQ----DLNAVFV 101 (623)
Q Consensus 26 ~~ke~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt~~t~n~~----~~~~i~~ 101 (623)
+.|++|+||||+|.||+.... +..|.|+.|++|+..++++||+++++|+||||+|||+.+.|+. +|+||++
T Consensus 5 ~~ke~iv~~iDvS~SM~~~d~-----~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d~~y~~i~v 79 (565)
T 1jey_B 5 GNKAAVVLCMDVGFTMSNSIP-----GIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITV 79 (565)
T ss_dssp -CCEEEEEEEECCGGGGCCBT-----TBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTCSTTEEE
T ss_pred CCceEEEEEEECChHhcccCC-----CCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccccCCCceEE
Confidence 457999999999999998753 2578999999999999999999999999999999999988764 6999999
Q ss_pred ecccccccCCCCChHHHHHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHHHHHhcC--CCCCCCcEEEEEeCCCCC
Q 006975 102 FNVAEREQLDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRKG--SSKTADKRILLFTNEDDP 179 (623)
Q Consensus 102 l~~~~~~~l~~p~~~~ik~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~~~f~~~--~~~~~~krI~l~Tn~d~P 179 (623)
+ ++|+.++++.++.|.+.+. ++...+++.+|||+|.++|.+. ++++.+||||||||+++|
T Consensus 80 l-----~~l~~~~~~~l~~l~~~l~-------------~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~ 141 (565)
T 1jey_B 80 H-----RHLMLPDFDLLEDIESKIQ-------------PGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSR 141 (565)
T ss_dssp E-----EEEECCCHHHHHHHHTTCC-------------CCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSC
T ss_pred e-----ecCCCCCHHHHHHHHhhcc-------------CCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCC
Confidence 9 9999999999988765221 1235789999999999999875 345678999999999999
Q ss_pred CCCCccCcchhhHHHHHHHHHHhHhcCceEE-EeeCCCC--CCCCccc-----------chhhhhcccC---Cccc-ccc
Q 006975 180 FGSIKGAAKNDMTRTTMQRAKDAQDLGISIE-LLPLSPP--DEEFKVS-----------HFYADMIGLE---GDDL-ALF 241 (623)
Q Consensus 180 ~~~~~~~~d~~~~~~~~~~a~dL~~~gI~i~-l~~i~~~--~~~Fd~~-----------~fy~~i~~~~---~~~~-~~~ 241 (623)
++. + + +.+.|++|++.||.|. +++++.+ +.+|+.+ .||.++.... ++.. ..+
T Consensus 142 ~~~-----~-~----~~~~a~~l~~~gI~i~~vig~g~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~e~~L~~i 211 (565)
T 1jey_B 142 FSK-----S-Q----LDIIIHSLKKCDISLQFFLPFSLGKEDGSGDRGDGPFRLGGHGPSFPLKGITEQQKEGLEIVKMV 211 (565)
T ss_dssp CCC-----T-T----HHHHHHHHHHTTEEEEEEESSCCC----------CCCCTTCSSCCCCTTTSCHHHHHHHHHHHHH
T ss_pred CCH-----H-H----HHHHHHHHHhcCcEEEEEeccCCCcCCcccccccccccccccccccchhccccchhhhHHHHHHH
Confidence 854 1 1 3346789999999999 7777654 2346543 6777764311 1000 000
Q ss_pred -----CCC---ccccHHHHHHHHH--hhhhcceeeeeeeEEecCCceEEEEEeeeecccC-CCcEeEecCCC--CCCcee
Q 006975 242 -----MPS---AGQKLEDMKDQLR--KRMFSKRIVKRISFIIANGLSIELNTYALIRPTV-PGAITWLDSVT--NHPLKT 308 (623)
Q Consensus 242 -----~~~---~~~~~~~L~~~i~--~k~~~kR~~~~~~l~lg~~~~I~V~~Y~~~~~~~-~~~~~~~~~~~--~~~vk~ 308 (623)
.++ ....+.+++..++ ++...++..|+++|+||++++|+|++|+++++++ +++++++++++ +.+|++
T Consensus 212 a~~~~G~~~~s~~~~~~~~~~~l~~~k~~~~r~~~~~g~l~lg~~v~I~V~~Y~~~~~~~~~~~~~~l~~~~~~~~~V~~ 291 (565)
T 1jey_B 212 MISLEGEDGLDEIYSFSESLRKLCVFKKIERHSIHWPCRLTIGSNLSIRIAAYKSILQERVKKTWTVVDAKTLKKEDIQK 291 (565)
T ss_dssp HHHHHCGGGGGGEEEHHHHTTSSTTTGGGCCCCCCEEEEEEETTTEEEEEEEEEEECCCCCCCCCEEEETTTCCSTTEEE
T ss_pred HHhcCCCcccceeecHHHHHHHhccCcceeecccccccceEECCCcEEEEEEEeeehhcccCCceEEecCccCCCcceEE
Confidence 000 1134454444322 2233344479999999999999999999999998 47899999999 999999
Q ss_pred eeEE-eeCCcCccc-cccceeeEecCCeeeecCHHHHHHhhccC-CCcEEEEeeecCCCCCcccccCCc-EEEecCCCCC
Q 006975 309 ERSF-ICADTGALM-QEPAKRFQPYKGENIKFSVQELSEIKRVS-TGHLRLHGFKPLSYLKDYHNLRPS-TFVFPSDKEV 384 (623)
Q Consensus 309 ~t~~-~~~dt~~~~-~~~~~k~y~yG~~~V~~~~ee~~~ik~~~-~~~l~llGF~~~~~i~~~~~~~~s-~fi~Pd~~~~ 384 (623)
+++| +|++||+.+ +++++|||+||+++|+|+++|++.++..+ +|+|+|+||+++++|+++|+++++ |||+|+. ..
T Consensus 292 ~~~y~v~~~~~~~V~~~di~kgy~yg~~~V~~~~ee~~~~~~~~~~~~l~ilgFv~~~~i~~~~~~~~s~y~l~p~~-~~ 370 (565)
T 1jey_B 292 ETVYCLNDDDETEVLKEDIIQGFRYGSDIVPFSKVDEEQMKYKSEGKCFSVLGFCKSSQVQRRFFMGNQVLKVFAAR-DD 370 (565)
T ss_dssp EEEEEESSSSCCEECGGGEEEEEEETTEEEECCHHHHHHHSCCCCCSEEEEEEEEEGGGSCGGGCEEEEEEEEEECT-TC
T ss_pred EEEEEecCCCCcccChHHeeeeEecCCeeeccCHHHHHHhcccCCCCcEEEEeeccHHHCCHhhccCCceEEEeCCC-CC
Confidence 9999 999999866 69999999999999999999999999865 599999999999999999999987 7888954 45
Q ss_pred cCcHHHHHHHHHHHHhcCcEEEEEe--cCCCCceEEEEEeehhhcccCCCCCCCcEEEEecCCccCCCCCccCCCCCCCC
Q 006975 385 VGSTCIFIALHRSMLRLNRFAVAFY--GNPSNPRLVALVAQDEIVRAGGQVEPPGMHMIYLPYSDDIRPVEELHSDTDAV 462 (623)
Q Consensus 385 ~gS~~~fsaL~~am~~~~kvaI~r~--r~~s~P~lvaL~P~~~~~~~~~q~~p~g~~li~LPfadDiR~~~~~~~~~~~~ 462 (623)
.||+++|+||++||.++++|||||| |.++.|+||||+|+.+.. ++||++++|||+||||.++++.+.....
T Consensus 371 ~~s~~af~aL~~al~~~~kvaIar~v~r~~~~p~l~aL~P~~~~~-------~~gl~l~~Lpf~ddvR~~~f~~l~~~~~ 443 (565)
T 1jey_B 371 EAAAVALSSLIHALDDLDMVAIVRYAYDKRANPQVGVAFPHIKHN-------YECLVYVQLPFMEDLRQYMFSSLKNSKK 443 (565)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEEEEESSSSSCCEEEEEEEEECSS-------CEEEEEEECCCGGGBCCCCCCCSTTCSS
T ss_pred hhhHHHHHHHHHHHHHCCCEEEEEEEEcCCCCcEEEEEeccccCC-------CCeEEEEccCCHHHcccccCCCCCcccc
Confidence 7899999999999999999999998 899999999999997643 4799999999999999988665422124
Q ss_pred CCCCHHHHHHHHHHHhhcCCC-----------CCCCCCCCChhHHHHHHHHHHhhcCcCCCCCCCCCCCCCh----hhhc
Q 006975 463 PRASDDEVKKAAALMKRIDLK-----------DFSVCQFANPSLQRHYAVLQALALEEDDMPEIKDETVPDE----EGMA 527 (623)
Q Consensus 463 ~~~~~eq~~~a~~lI~~l~l~-----------~y~p~~~~NP~lq~~y~~lea~Al~~~~~~~~~D~t~P~~----~~i~ 527 (623)
..++++|+++|++||++|++. .|+|+.|+||++|+||++|+++|++++.|.++.|.+++++ +.+.
T Consensus 444 ~~~~~~~l~~a~~lId~m~~~~~~~~~~~~~~~~~p~~~~np~lq~~~~~i~~kal~~~~~~p~~d~~l~~~~~p~~~~~ 523 (565)
T 1jey_B 444 YAPTEAQLNAVDALIDSMSLAKKDEKTDTLEDLFPTTKIPNPRFQRLFQCLLHRALHPREPLPPIQQHIWNMLNPPAEVT 523 (565)
T ss_dssp SCCCHHHHHHHHHHHHHTBCEECCTTSSCCEESCCGGGSCCHHHHHHHHHHHHHHHCTTSCCCCCCHHHHHHHSCCHHHH
T ss_pred CCCCHHHHHHHHHHHHhccCCcccccCcchhcccCcccCCCHHHHHHHHHHHHHhcCCCCCCCCcCHHHHhhcCCCHHHH
Confidence 468999999999999999994 3999999999999999999999999999888888887776 6777
Q ss_pred cccchHHHHHHHHhhcC
Q 006975 528 RPGVVKAVEEFKLSVYG 544 (623)
Q Consensus 528 ~~~~~~~i~~fk~~~~~ 544 (623)
++++ +.+++|++. |+
T Consensus 524 ~~~~-~~l~~~k~~-f~ 538 (565)
T 1jey_B 524 TKSQ-IPLSKIKTL-FP 538 (565)
T ss_dssp HHHH-HHHHHHHHH-SC
T ss_pred HHHH-HHHHHHHHh-CC
Confidence 7888 899999975 44
No 3
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=99.31 E-value=1.5e-12 Score=118.40 Aligned_cols=51 Identities=24% Similarity=0.262 Sum_probs=48.6
Q ss_pred cchHHHHHHHHcCCcccccHHHHHHHHHHcCCCCCCChHHHHHHHHHhhcC
Q 006975 573 CANYDWADLADKGKLKEMTVQELKLYLMAHNLSTTGRKETLISRILTHMGK 623 (623)
Q Consensus 573 ~~~~~~~~~~~~g~l~kltv~~LK~~l~~~~~~~~gkK~dLi~~i~~~l~~ 623 (623)
.+.++|..+|++|+|++|||+|||+||+++|++++|||+|||+||.+||+.
T Consensus 47 ~s~~~i~~l~~~g~L~kltV~eLK~~l~~~gL~~~GkKadLI~Ri~~~l~~ 97 (151)
T 1jjr_A 47 YSEEELKTHISKGTLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQD 97 (151)
T ss_dssp CSSHHHHHHHHHTCTTSSCHHHHHHHHHHHTCCCCSSSHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHcCcHHhccHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhh
Confidence 478899999999999999999999999999999999999999999999874
No 4
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=99.03 E-value=2.3e-11 Score=110.52 Aligned_cols=51 Identities=24% Similarity=0.262 Sum_probs=0.0
Q ss_pred cchHHHHHHHHcCCcccccHHHHHHHHHHcCCCCCCChHHHHHHHHHhhcC
Q 006975 573 CANYDWADLADKGKLKEMTVQELKLYLMAHNLSTTGRKETLISRILTHMGK 623 (623)
Q Consensus 573 ~~~~~~~~~~~~g~l~kltv~~LK~~l~~~~~~~~gkK~dLi~~i~~~l~~ 623 (623)
.+..+|+.++++|+|++|||+|||+||+.+|++++|||+||||||++|+++
T Consensus 101 ~s~eei~~~~~~g~l~klTV~~Lk~~l~~~gl~~~GkKaeLieRi~~~~~~ 151 (151)
T 1jjr_A 101 YSEEELKTHISKGTLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQD 151 (151)
T ss_dssp ---------------------------------------------------
T ss_pred ccHHHHHHHHhcCccccccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcC
Confidence 356688899999999999999999999999999999999999999999985
No 5
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.98 E-value=4.9e-09 Score=105.61 Aligned_cols=145 Identities=14% Similarity=0.101 Sum_probs=105.9
Q ss_pred ceEEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEecCCCCCCCCCCcEEEeccccc
Q 006975 28 KEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAER 107 (623)
Q Consensus 28 ke~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt~~t~n~~~~~~i~~l~~~~~ 107 (623)
-||||||||+|.||-... -..+.|+.+..++..+++.+.-.+|.|.||||.|.... ..++
T Consensus 3 lEAtViviD~S~SM~~~D------~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~---------~~vl----- 62 (268)
T 4b4t_W 3 LEATVLVIDNSEYSRNGD------FPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGAN---------PRVL----- 62 (268)
T ss_dssp CEEEEEEECCSSTTSSTT------SSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTS---------CEEE-----
T ss_pred ceeEEEEEECCHHHhCCC------CCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCc---------ceec-----
Confidence 379999999999996532 23688999999999999999999999999999997543 2334
Q ss_pred ccCCCCChHHHHHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCCCccCc
Q 006975 108 EQLDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIKGAA 187 (623)
Q Consensus 108 ~~l~~p~~~~ik~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~~~f~~~~~~~~~krI~l~Tn~d~P~~~~~~~~ 187 (623)
.++. -+.. .+...+.. + ...-..++.++|-.|...+.+...+...+||+|||+.+...
T Consensus 63 ~plT-~D~~---~il~aL~~----l-------~~~G~T~l~~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~------- 120 (268)
T 4b4t_W 63 STFT-AEFG---KILAGLHD----T-------QIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD------- 120 (268)
T ss_dssp EEEE-SCHH---HHHHHHTT----C-------CCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSS-------
T ss_pred cCCc-chHH---HHHHHhhh----c-------CcCCCCChHHHHHHHHHHHHhcccCCCceEEEEEECCCCCC-------
Confidence 2221 1222 22222221 1 11335789999999999998877778888999999986442
Q ss_pred chhhHHHHHHHHHHhHhcCceEEEeeCCCC
Q 006975 188 KNDMTRTTMQRAKDAQDLGISIELLPLSPP 217 (623)
Q Consensus 188 d~~~~~~~~~~a~dL~~~gI~i~l~~i~~~ 217 (623)
+.. .+...|+.+++.||.|.++.++..
T Consensus 121 ~~~---~l~~lak~lkk~gI~v~vIgFG~~ 147 (268)
T 4b4t_W 121 SRD---ELIRLAKTLKKNNVAVDIINFGEI 147 (268)
T ss_dssp CHH---HHHHHHHHHHHHTEEEEEEEESSC
T ss_pred CHH---HHHHHHHHHHHcCCEEEEEEeCCC
Confidence 222 245567889999999999999863
No 6
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=98.86 E-value=3.1e-08 Score=95.42 Aligned_cols=146 Identities=14% Similarity=0.168 Sum_probs=102.2
Q ss_pred ceEEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEecCCCCCCCCCCcEEEeccccc
Q 006975 28 KEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAER 107 (623)
Q Consensus 28 ke~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt~~t~n~~~~~~i~~l~~~~~ 107 (623)
+|+++|+||+|.||....- ..+.|+.+.+++..++..++-.++.|.||||.|+.+.. +++
T Consensus 2 ~e~lvlvlD~S~SM~~~D~------~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a---------~~~----- 61 (192)
T 2x5n_A 2 LEATMILIDNSEWMINGDY------IPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSP---------QVL----- 61 (192)
T ss_dssp CEEEEEEECCSGGGGCTTS------SSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSC---------CEE-----
T ss_pred ceEEEEEEECCHhhccCCC------CCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCc---------EEe-----
Confidence 6899999999999976532 35789999999999999999999999999999997532 233
Q ss_pred ccCCCCChHHHHHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCCCccCc
Q 006975 108 EQLDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIKGAA 187 (623)
Q Consensus 108 ~~l~~p~~~~ik~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~~~f~~~~~~~~~krI~l~Tn~d~P~~~~~~~~ 187 (623)
.|+. -+ ...+...+.. + .+ ....++.++|..|..+|++...+...+||+||+..+. ..
T Consensus 62 ~plT-~d---~~~i~~~L~~----l------~~-~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~--~~----- 119 (192)
T 2x5n_A 62 STLT-RD---YGKFLSAMHD----L------PV-RGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPI--VE----- 119 (192)
T ss_dssp EEEE-SC---HHHHHHHHTT----C------CC-CSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCC--SS-----
T ss_pred cCCC-CC---HHHHHHHHHc----C------CC-CCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCC--CC-----
Confidence 3332 12 2223333322 1 11 2357899999999999987554455667877776544 22
Q ss_pred chhhHHHHHHHHHHhHhcCceEEEeeCCCCC
Q 006975 188 KNDMTRTTMQRAKDAQDLGISIELLPLSPPD 218 (623)
Q Consensus 188 d~~~~~~~~~~a~dL~~~gI~i~l~~i~~~~ 218 (623)
+... ....++.+++.||.|.++.++..+
T Consensus 120 ~~~~---~~~~a~~lk~~gi~v~~Ig~G~~~ 147 (192)
T 2x5n_A 120 DEKN---LIRLAKRMKKNNVAIDIIHIGELQ 147 (192)
T ss_dssp CHHH---HHHHHHHHHHTTEEEEEEEESCC-
T ss_pred Cchh---HHHHHHHHHHCCCEEEEEEeCCCC
Confidence 2222 334566889999999999998643
No 7
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=98.83 E-value=2.5e-09 Score=80.20 Aligned_cols=37 Identities=32% Similarity=0.476 Sum_probs=35.3
Q ss_pred CcccccHHHHHHHHHHcCCCCCCChHHHHHHHHHhhc
Q 006975 586 KLKEMTVQELKLYLMAHNLSTTGRKETLISRILTHMG 622 (623)
Q Consensus 586 ~l~kltv~~LK~~l~~~~~~~~gkK~dLi~~i~~~l~ 622 (623)
.+++|||++||++|+.+|++++|+|+|||+||.+|+.
T Consensus 9 ~l~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~~l~ 45 (55)
T 2do1_A 9 ELHKLKLAELKQECLARGLETKGIKQDLIHRLQAYLE 45 (55)
T ss_dssp CTTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHH
T ss_pred CHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh
Confidence 4889999999999999999999999999999999985
No 8
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=98.77 E-value=6.8e-09 Score=76.24 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=35.8
Q ss_pred CCcccccHHHHHHHHHHcCCCCCCChHHHHHHHHHhhc
Q 006975 585 GKLKEMTVQELKLYLMAHNLSTTGRKETLISRILTHMG 622 (623)
Q Consensus 585 g~l~kltv~~LK~~l~~~~~~~~gkK~dLi~~i~~~l~ 622 (623)
-.+++|||++||+.|+.+|++++|+|+|||+|+.+|++
T Consensus 8 ~~~~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~~~ 45 (50)
T 1zrj_A 8 MDVRRLKVNELREELQRRGLDTRGLKAELAERLQAALS 45 (50)
T ss_dssp CCGGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHC
T ss_pred CCHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh
Confidence 45789999999999999999999999999999999986
No 9
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=98.77 E-value=5.5e-09 Score=77.14 Aligned_cols=37 Identities=32% Similarity=0.434 Sum_probs=34.9
Q ss_pred CcccccHHHHHHHHHHcCCCCCCChHHHHHHHHHhhc
Q 006975 586 KLKEMTVQELKLYLMAHNLSTTGRKETLISRILTHMG 622 (623)
Q Consensus 586 ~l~kltv~~LK~~l~~~~~~~~gkK~dLi~~i~~~l~ 622 (623)
.+++|||++||++|+.+|++++|+|+|||+|+.+|..
T Consensus 4 ~~~kltV~eLK~~Lk~RGL~~~G~KadLieRL~~~~~ 40 (51)
T 1h1j_S 4 DYSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDE 40 (51)
T ss_dssp SGGGCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHH
T ss_pred hHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999864
No 10
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=98.76 E-value=2.7e-09 Score=91.57 Aligned_cols=38 Identities=24% Similarity=0.266 Sum_probs=36.5
Q ss_pred CCcccccHHHHHHHHHHcCCCCCCChHHHHHHHHHhhc
Q 006975 585 GKLKEMTVQELKLYLMAHNLSTTGRKETLISRILTHMG 622 (623)
Q Consensus 585 g~l~kltv~~LK~~l~~~~~~~~gkK~dLi~~i~~~l~ 622 (623)
|.|++|||+|||+||+++|++++|+|+|||+||.+||+
T Consensus 35 ~~l~kLtVaELK~~cr~~GL~~sGkKaeLi~RI~~yl~ 72 (114)
T 2rnn_A 35 TLMELLKVSELKDICRSVSFPVSGRKAVLQDLIRNFLQ 72 (114)
T ss_dssp HHHTTCCHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHcCCCcCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999986
No 11
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=98.71 E-value=1.2e-08 Score=80.77 Aligned_cols=37 Identities=35% Similarity=0.463 Sum_probs=35.5
Q ss_pred CcccccHHHHHHHHHHcCCCCCCChHHHHHHHHHhhc
Q 006975 586 KLKEMTVQELKLYLMAHNLSTTGRKETLISRILTHMG 622 (623)
Q Consensus 586 ~l~kltv~~LK~~l~~~~~~~~gkK~dLi~~i~~~l~ 622 (623)
.+++|||++||++|+.+||+++|+|+|||+|+.+|++
T Consensus 25 ~l~klkVaeLK~eLk~RGL~~sG~KaeLIeRL~~~~~ 61 (75)
T 2kvu_A 25 NLDDMKVAELKQELKLRSLPVSGTKTELIERLRAYQD 61 (75)
T ss_dssp TTTTSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHH
T ss_pred HHHHCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999975
No 12
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.31 E-value=9.1e-06 Score=79.04 Aligned_cols=165 Identities=8% Similarity=0.053 Sum_probs=103.0
Q ss_pred ceEEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEecCCCCCCCCCCcEEEeccccc
Q 006975 28 KEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAER 107 (623)
Q Consensus 28 ke~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt~~t~n~~~~~~i~~l~~~~~ 107 (623)
.=-++|+||+|.||.. ..|..+.+++..++.+.-...+.+.||||.|++.. ++.
T Consensus 15 ~~div~vlD~SgSM~~-----------~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~----------~~~----- 68 (223)
T 1q0p_A 15 SMNIYLVLDGSDSIGA-----------SNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYP----------KIW----- 68 (223)
T ss_dssp CEEEEEEEECSTTTCH-----------HHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSE----------EEE-----
T ss_pred ceeEEEEEeCCCCCch-----------HHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCcc----------cee-----
Confidence 4468999999999943 34899999999998876555678999999999853 344
Q ss_pred ccCCCCChHHHHHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHHHHHhcCCC------CCCCcEEEEEeCCCCCCC
Q 006975 108 EQLDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRKGSS------KTADKRILLFTNEDDPFG 181 (623)
Q Consensus 108 ~~l~~p~~~~ik~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~~~f~~~~~------~~~~krI~l~Tn~d~P~~ 181 (623)
.++..+.......+.+.+.... ...+. .....++..||..|.++|..... ....+.|+||||...-.+
T Consensus 69 ~~~~~~~~~~~~~~~~~i~~l~----~~~~~--~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g 142 (223)
T 1q0p_A 69 VKVSEADSSNADWVTKQLNEIN----YEDHK--LKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMG 142 (223)
T ss_dssp ECTTSGGGGCHHHHHHHHHTCC----TTSCS--CTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSS
T ss_pred eccccCCCCCHHHHHHHHHhcc----ccccc--CCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCC
Confidence 5666555444444444443311 00000 12356899999999999874321 245677999999864433
Q ss_pred CCccCcchhh-HHHHHHH------HHHhHhcCceEEEeeCCCCCCCCcccchhhhhccc
Q 006975 182 SIKGAAKNDM-TRTTMQR------AKDAQDLGISIELLPLSPPDEEFKVSHFYADMIGL 233 (623)
Q Consensus 182 ~~~~~~d~~~-~~~~~~~------a~dL~~~gI~i~l~~i~~~~~~Fd~~~fy~~i~~~ 233 (623)
. +... ...+... +..+++.||.|..+.++. .++.. ..+.|...
T Consensus 143 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~igvG~---~~~~~-~L~~iA~~ 192 (223)
T 1q0p_A 143 G-----DPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGP---LVNQV-NINALASK 192 (223)
T ss_dssp S-----CTHHHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSS---CCCHH-HHHHHSCC
T ss_pred C-----ChHHHHHHHHHHHhhhhhhhhcccCCcEEEEEEecC---cCCHH-HHHHHhcC
Confidence 2 1111 1211111 134567899999999964 24433 45555443
No 13
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.31 E-value=9e-06 Score=78.95 Aligned_cols=141 Identities=17% Similarity=0.225 Sum_probs=94.8
Q ss_pred cceEEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEecCCCCCCCCCCcEEEecccc
Q 006975 27 TKEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAE 106 (623)
Q Consensus 27 ~ke~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt~~t~n~~~~~~i~~l~~~~ 106 (623)
..--++||||+|.||..... ..+.|+.|.+++..++... +.|.||||.|++. ..++
T Consensus 10 ~~~~iv~vlD~SgSM~~~d~------~~~r~~~ak~~~~~~~~~~----~~~~v~lv~F~~~----------~~~~---- 65 (218)
T 3ibs_A 10 KGVEVIIALDISNSMLAQDV------QPSRLEKAKRLISRLVDEL----DNDKVGMIVFAGD----------AFTQ---- 65 (218)
T ss_dssp CCCEEEEEEECSGGGGCCSS------SSCHHHHHHHHHHHHHHTC----SSCEEEEEEESSS----------EEEE----
T ss_pred CCCcEEEEEECCcCcccccC------CcCHHHHHHHHHHHHHHhC----CCCeEEEEEECCC----------ceEe----
Confidence 45569999999999976532 3578999999888888764 5899999999875 3344
Q ss_pred cccCCCCChHHHHHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCCCccC
Q 006975 107 REQLDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIKGA 186 (623)
Q Consensus 107 ~~~l~~p~~~~ik~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~~~f~~~~~~~~~krI~l~Tn~d~P~~~~~~~ 186 (623)
.++.. +...+ ...+..... +. ......++..||..|.++|... ....+.||||||.......
T Consensus 66 -~~~~~-~~~~~---~~~l~~l~~------~~-~~~g~T~l~~al~~a~~~l~~~--~~~~~~ivllTDG~~~~~~---- 127 (218)
T 3ibs_A 66 -LPITS-DYISA---KMFLESISP------SL-ISKQGTAIGEAINLATRSFTPQ--EGVGRAIIVITDGENHEGG---- 127 (218)
T ss_dssp -EEEES-CHHHH---HHHHHTCCG------GG-CCSCSCCHHHHHHHHHTTSCSC--SSCCEEEEEEECCTTCCSC----
T ss_pred -CCCCC-CHHHH---HHHHHhcCc------cc-CCCCCCcHHHHHHHHHHHHhhC--CCCCcEEEEEcCCCCCCCc----
Confidence 34322 33333 333332110 00 0123568999999999988653 3567899999998643221
Q ss_pred cchhhHHHHHHHHHHhHhcCceEEEeeCCCC
Q 006975 187 AKNDMTRTTMQRAKDAQDLGISIELLPLSPP 217 (623)
Q Consensus 187 ~d~~~~~~~~~~a~dL~~~gI~i~l~~i~~~ 217 (623)
.. ..++.++..||.|..+.++.+
T Consensus 128 -----~~---~~~~~~~~~~i~v~~igig~~ 150 (218)
T 3ibs_A 128 -----AV---EAAKAAAEKGIQVSVLGVGMP 150 (218)
T ss_dssp -----HH---HHHHHHHTTTEEEEEEEESCT
T ss_pred -----HH---HHHHHHHhcCCEEEEEEecCC
Confidence 12 234467889999999999864
No 14
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=98.24 E-value=1.3e-05 Score=80.90 Aligned_cols=156 Identities=13% Similarity=0.116 Sum_probs=102.3
Q ss_pred eEEEEEEECCccccCCCCCCCCCCCCCHH-HHHHHHHHHHHHhhhhccCCCeEEEEEEecCCCCCCCCCCcEEEeccccc
Q 006975 29 EYVVYLVDASPKMFSTTCPAEDQTDETHF-HIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAER 107 (623)
Q Consensus 29 e~iiflIDvs~sM~~~~~~~~~~~~~s~~-~~al~~i~~~~~~kIi~~~~D~vgivl~gt~~t~n~~~~~~i~~l~~~~~ 107 (623)
=-++|+||.|.||.. ..| ..+..++..++.+..+..+.+.||||.|++. ..+.
T Consensus 19 ~DivfvlD~SgSM~~-----------~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~----------~~~~----- 72 (266)
T 4hqo_A 19 VDLYLLVDGSGSIGY-----------PNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSY----------TTEL----- 72 (266)
T ss_dssp EEEEEEEECSTTTCH-----------HHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSS----------EEEE-----
T ss_pred eeEEEEEECCCCcCh-----------hHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCC----------cceE-----
Confidence 348999999999932 347 4788889999999888888999999999985 3444
Q ss_pred ccCCCCChHHHHHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHHHHHhcC-CCCCCCcEEEEEeCCCCCCCCCccC
Q 006975 108 EQLDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRKG-SSKTADKRILLFTNEDDPFGSIKGA 186 (623)
Q Consensus 108 ~~l~~p~~~~ik~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~~~f~~~-~~~~~~krI~l~Tn~d~P~~~~~~~ 186 (623)
.+|...+......+...+...... +. .....++..||..|.++|... ......|.|+||||...- .
T Consensus 73 ~~l~~~~~~~~~~~~~~i~~l~~~----~~---~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~-d----- 139 (266)
T 4hqo_A 73 IRLGSGQSIDKRQALSKVTELRKT----YT---PYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPN-S----- 139 (266)
T ss_dssp ECTTSHHHHCHHHHHHHHHHHHHH----CC---CCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCS-C-----
T ss_pred EecCCCCccCHHHHHHHHHHhhhc----cC---CCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCC-C-----
Confidence 555554322233333333321100 00 123567999999999999764 234456899999998532 1
Q ss_pred cchhhHHHHHHHHHHhHhcCceEEEeeCCCCCCCCcccchhhhhcc
Q 006975 187 AKNDMTRTTMQRAKDAQDLGISIELLPLSPPDEEFKVSHFYADMIG 232 (623)
Q Consensus 187 ~d~~~~~~~~~~a~dL~~~gI~i~l~~i~~~~~~Fd~~~fy~~i~~ 232 (623)
.. .+...++.+++.||.|..++|+.. .+.. +...|..
T Consensus 140 --~~---~~~~~a~~l~~~gi~i~~iGiG~~---~~~~-~L~~iA~ 176 (266)
T 4hqo_A 140 --KY---RALEVANKLKQRNVRLAVIGIGQG---INHQ-FNRLIAG 176 (266)
T ss_dssp --HH---HHHHHHHHHHHTTCEEEEEECSSS---CCHH-HHHHHHT
T ss_pred --ch---HHHHHHHHHHHCCCEEEEEecCcc---cCHH-HHHHhhC
Confidence 11 233456688899999999999752 3332 4455553
No 15
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=98.19 E-value=4.8e-06 Score=80.35 Aligned_cols=143 Identities=15% Similarity=0.239 Sum_probs=93.1
Q ss_pred ceEEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEecCCCCCCCCCCcEEEeccccc
Q 006975 28 KEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAER 107 (623)
Q Consensus 28 ke~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt~~t~n~~~~~~i~~l~~~~~ 107 (623)
.=-++|+||.|.||.. ..|+.+.+.+..++...-+....+.||||.|++.. .+.
T Consensus 13 ~~divfvlD~SgSm~~-----------~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~----------~~~----- 66 (202)
T 1ijb_A 13 LLDLVFLLDGSSRLSE-----------AEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGS----------HAY----- 66 (202)
T ss_dssp CEEEEEEEECBTTSCH-----------HHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSE----------EEE-----
T ss_pred cccEEEEEECCCCCCH-----------HHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCc----------eEE-----
Confidence 3458999999999932 35899999999999887776778999999998753 333
Q ss_pred ccCCCCChHHHHHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHH-HHHhcCCCCCCCcEEEEEeCCCCCCCCCccC
Q 006975 108 EQLDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQ-GLLRKGSSKTADKRILLFTNEDDPFGSIKGA 186 (623)
Q Consensus 108 ~~l~~p~~~~ik~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~-~~f~~~~~~~~~krI~l~Tn~d~P~~~~~~~ 186 (623)
.+|...+ ....+...+.. + .+. +....++..||..|. ++|.........|.|+||||.......
T Consensus 67 ~~l~~~~--~~~~~~~~i~~----l--~~~---gg~~T~~~~aL~~a~~~~~~~~~r~~~~~~iillTDG~~~~~~---- 131 (202)
T 1ijb_A 67 IGLKDRK--RPSELRRIASQ----V--KYA---GSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRM---- 131 (202)
T ss_dssp ECTTCCC--CHHHHHHHHHT----C--CCC---CBSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGGG----
T ss_pred EecCCCC--CHHHHHHHHHh----C--cCC---CCCcCcHHHHHHHHHHHHhccCCCCCCCeEEEEEccCCCCccc----
Confidence 4454322 12223333322 1 111 112367999999987 567543334567889999998643211
Q ss_pred cchhhHHHHHHHHHHhHhcCceEEEeeCCC
Q 006975 187 AKNDMTRTTMQRAKDAQDLGISIELLPLSP 216 (623)
Q Consensus 187 ~d~~~~~~~~~~a~dL~~~gI~i~l~~i~~ 216 (623)
.+. +...++.|++.||.|..++++.
T Consensus 132 --~~~---~~~~a~~l~~~gi~i~~igvG~ 156 (202)
T 1ijb_A 132 --SRN---FVRYVQGLKKKKVIVIPVGIGP 156 (202)
T ss_dssp --CTT---HHHHHHHHHHTTEEEEEEEEST
T ss_pred --hHH---HHHHHHHHHHCCCEEEEEecCC
Confidence 111 2234557888999999999964
No 16
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=98.17 E-value=3.1e-05 Score=72.96 Aligned_cols=142 Identities=15% Similarity=0.176 Sum_probs=92.9
Q ss_pred ceEEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEecCCCCCCCCCCcEEEeccccc
Q 006975 28 KEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAER 107 (623)
Q Consensus 28 ke~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt~~t~n~~~~~~i~~l~~~~~ 107 (623)
+--++|+||.|.||.. ..|..+.+++..++.+.-+....+.||||.|++.. .+.
T Consensus 17 ~~divfvlD~SgSm~~-----------~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~----------~~~----- 70 (178)
T 2xgg_A 17 QLDICFLIDSSGSIGI-----------QNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDV----------HLQ----- 70 (178)
T ss_dssp CEEEEEEEECCTTTCH-----------HHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSE----------EEE-----
T ss_pred CeeEEEEEECCCCCCH-----------HHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCce----------EEE-----
Confidence 4568999999999932 35899999999998886555667999999999853 334
Q ss_pred ccCCCCChHHHHHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHHHH-HhcC--CCCCCCcEEEEEeCCCCCCCCCc
Q 006975 108 EQLDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGL-LRKG--SSKTADKRILLFTNEDDPFGSIK 184 (623)
Q Consensus 108 ~~l~~p~~~~ik~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~~~-f~~~--~~~~~~krI~l~Tn~d~P~~~~~ 184 (623)
.+|..........+...+.. + .+ .....++..||..|.++ |... ......|.|+||||... ..
T Consensus 71 ~~l~~~~~~~~~~~~~~i~~----l--~~----~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~-~~--- 136 (178)
T 2xgg_A 71 WDLQSPNAVDKQLAAHAVLD----M--PY----KKGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGES-DS--- 136 (178)
T ss_dssp ECTTSGGGSCHHHHHHHHHH----C--CC----CCCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCC-CH---
T ss_pred EeCCCCCccCHHHHHHHHHh----C--CC----CCCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCC-CC---
Confidence 45544321122333333322 1 11 12256899999999987 5432 23456789999999752 11
Q ss_pred cCcchhhHHHHHHHHHHhHhcCceEEEeeCCC
Q 006975 185 GAAKNDMTRTTMQRAKDAQDLGISIELLPLSP 216 (623)
Q Consensus 185 ~~~d~~~~~~~~~~a~dL~~~gI~i~l~~i~~ 216 (623)
.. .....++.|++.||.|..++++.
T Consensus 137 ----~~---~~~~~~~~l~~~gi~v~~igvG~ 161 (178)
T 2xgg_A 137 ----DF---RTVRAAKEIRELGGIVTVLAVGH 161 (178)
T ss_dssp ----HH---HHSHHHHHHHHTTCEEEEEECC-
T ss_pred ----Cc---cHHHHHHHHHHCCCEEEEEEcCC
Confidence 11 12334567788999999999964
No 17
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.13 E-value=5.1e-05 Score=77.06 Aligned_cols=153 Identities=14% Similarity=0.180 Sum_probs=99.1
Q ss_pred ceEEEEEEECCccccCCCCCCCCCCCCCHH-HHHHHHHHHHHHhhhhccCCCeEEEEEEecCCCCCCCCCCcEEEecccc
Q 006975 28 KEYVVYLVDASPKMFSTTCPAEDQTDETHF-HIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAE 106 (623)
Q Consensus 28 ke~iiflIDvs~sM~~~~~~~~~~~~~s~~-~~al~~i~~~~~~kIi~~~~D~vgivl~gt~~t~n~~~~~~i~~l~~~~ 106 (623)
+=-++||||.|.||.. ..| ..+..++..++.+..+....+.||||.|++.. .+.
T Consensus 21 ~~div~vlD~SgSM~~-----------~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~----------~~~---- 75 (281)
T 4hqf_A 21 EVDLYLLMDGSGSIRR-----------HNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNA----------REI---- 75 (281)
T ss_dssp CEEEEEEEECCCCSST-----------HHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTE----------EEE----
T ss_pred ceeEEEEEeCCCCcCH-----------HHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCc----------eEE----
Confidence 3458999999999943 235 78888899998887777779999999999853 233
Q ss_pred cccCCCC---ChHH-HHHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHHHHHhcCC-CCCCCcEEEEEeCCCCCCC
Q 006975 107 REQLDRP---TARF-IKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRKGS-SKTADKRILLFTNEDDPFG 181 (623)
Q Consensus 107 ~~~l~~p---~~~~-ik~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~~~f~~~~-~~~~~krI~l~Tn~d~P~~ 181 (623)
.+|... +... +..|..|.... + .....++..||..|..+|.... .....|.||||||...- .
T Consensus 76 -~~l~~~~~~~~~~l~~~i~~l~~~~-------~----~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~-d 142 (281)
T 4hqf_A 76 -IRLHSDASKNKEKALIIIKSLLSTN-------L----PYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPD-S 142 (281)
T ss_dssp -EEECSSCSSCHHHHHHHHHHHHHTT-------G----GGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCS-C
T ss_pred -EEccccCccCHHHHHHHHHHHhhcc-------C----CCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCC-C
Confidence 344343 2322 23333332110 0 0124679999999988876532 33457889999998532 1
Q ss_pred CCccCcchhhHHHHHHHHHHhHhcCceEEEeeCCCCCCCCcccchhhhhcc
Q 006975 182 SIKGAAKNDMTRTTMQRAKDAQDLGISIELLPLSPPDEEFKVSHFYADMIG 232 (623)
Q Consensus 182 ~~~~~~d~~~~~~~~~~a~dL~~~gI~i~l~~i~~~~~~Fd~~~fy~~i~~ 232 (623)
.. .+...++.|+..||.|..++++.. .+.+ +.+.|..
T Consensus 143 -------~~---~~~~~~~~l~~~gv~i~~igiG~~---~~~~-~L~~iA~ 179 (281)
T 4hqf_A 143 -------IQ---DSLKESRKLSDRGVKIAVFGIGQG---INVA-FNRFLVG 179 (281)
T ss_dssp -------HH---HHHHHHHHHHHTTCEEEEEEESSS---CCHH-HHHHHTT
T ss_pred -------cH---HHHHHHHHHHHCCCEEEEEeCCCc---cCHH-HHHhhhC
Confidence 11 133456678899999999999752 3333 4455543
No 18
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.07 E-value=6.6e-05 Score=70.47 Aligned_cols=137 Identities=14% Similarity=0.125 Sum_probs=85.4
Q ss_pred eEEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEecCCCCCCCCCCcEEEecccccc
Q 006975 29 EYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAERE 108 (623)
Q Consensus 29 e~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt~~t~n~~~~~~i~~l~~~~~~ 108 (623)
=-++|+||+|.||... ....+..+..++... + ++.|.||||.|++.. .+. .
T Consensus 7 ~dvv~vlD~SgSM~~~------------~~~~~~~~~~~~~~~-~-~~~~~v~lv~f~~~~----------~~~-----~ 57 (182)
T 1shu_X 7 FDLYFVLDKSGSVANN------------WIEIYNFVQQLAERF-V-SPEMRLSFIVFSSQA----------TII-----L 57 (182)
T ss_dssp EEEEEEEECSGGGGGG------------HHHHHHHHHHHHHHC-C-CTTEEEEEEEESSSE----------EEE-----E
T ss_pred eeEEEEEECCCCcccC------------HHHHHHHHHHHHHHh-c-CCCceEEEEEeCCCc----------eEE-----E
Confidence 3589999999999531 223445555555544 2 379999999998753 233 3
Q ss_pred cCCCCChHHHHHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCCCccCcc
Q 006975 109 QLDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIKGAAK 188 (623)
Q Consensus 109 ~l~~p~~~~ik~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~~~f~~~~~~~~~krI~l~Tn~d~P~~~~~~~~d 188 (623)
++. .+...+ ...+..... .. .....++..||..|.+++.........+.|+||||.... .. .
T Consensus 58 ~~~-~~~~~~---~~~l~~l~~-----~~---~~g~T~~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~-~~-----~ 119 (182)
T 1shu_X 58 PLT-GDRGKI---SKGLEDLKR-----VS---PVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLD-GL-----V 119 (182)
T ss_dssp EEE-CCHHHH---HHHHHHHHT-----CC---CCSCCCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCC-TT-----H
T ss_pred CCC-CCHHHH---HHHHHhccc-----CC---CCCCchHHHHHHHHHHHHHhccCCCCCeEEEEECCCCcC-CC-----C
Confidence 333 233333 222222110 00 123568999999999999764334567899999998742 22 1
Q ss_pred hhhHHHHHHHHHHhHhcCceEEEeeCC
Q 006975 189 NDMTRTTMQRAKDAQDLGISIELLPLS 215 (623)
Q Consensus 189 ~~~~~~~~~~a~dL~~~gI~i~l~~i~ 215 (623)
. ..+...++.+...||.+..++++
T Consensus 120 ~---~~~~~~~~~~~~~~i~i~~igvg 143 (182)
T 1shu_X 120 P---SYAEKEAKISRSLGASVYCVGVL 143 (182)
T ss_dssp H---HHHHHHHHHHHHTTCEEEEEECS
T ss_pred c---hhHHHHHHHHHhCCCEEEEEeCC
Confidence 1 11233455778899999999996
No 19
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=98.03 E-value=0.00044 Score=75.35 Aligned_cols=151 Identities=12% Similarity=0.020 Sum_probs=99.5
Q ss_pred ceEEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEecCCCCCCCCCCcEEEeccccc
Q 006975 28 KEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAER 107 (623)
Q Consensus 28 ke~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt~~t~n~~~~~~i~~l~~~~~ 107 (623)
.=.++|+||+|.||-.+ .+.|..+.+++..++.+. .+.|.+|||.|++.. .++
T Consensus 77 ~~dvv~VLD~SGSM~~~---------~~rl~~ak~a~~~ll~~L---~~~drv~lV~Fs~~a----------~~~----- 129 (464)
T 4fx5_A 77 ENVEVIIIDCSGSMDYP---------RTKMMAAKEATKVAIDTL---TDGAFFAVVAGTEGA----------RVV----- 129 (464)
T ss_dssp CEEEEEEEECCGGGGTT---------THHHHHHHHHHHHHHHHS---CTTCEEEEEEESSSE----------EEE-----
T ss_pred CceEEEEEEcCcccCCC---------CchHHHHHHHHHHHHHhC---CCCCEEEEEEEcCce----------EEE-----
Confidence 35599999999999522 256898888888887653 388999999998753 334
Q ss_pred cc----CCCCChHHHHHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCCC
Q 006975 108 EQ----LDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSI 183 (623)
Q Consensus 108 ~~----l~~p~~~~ik~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~~~f~~~~~~~~~krI~l~Tn~d~P~~~~ 183 (623)
.+ |...+......+...+.... .....++..+|..|.++|... ....+.||||||.......
T Consensus 130 ~p~t~~l~~~~~~~~~~l~~~I~~L~-----------~~GgT~l~~aL~~A~~~l~~~--~~~~~~IILLTDG~~~~~~- 195 (464)
T 4fx5_A 130 YPTGGQLLRADYQSRAAAKEAVGRLH-----------ANGGTAMGRWLAQAGRIFDTA--PSAIKHAILLTDGKDESET- 195 (464)
T ss_dssp ESSSSSCEECSHHHHHHHHHHHHTCC-----------CCSCCCHHHHHHHHHHHHTTC--TTSEEEEEEEESSCCTTSC-
T ss_pred ecCCcccccCCHHHHHHHHHHHHcCC-----------CCCCCcHHHHHHHHHHHHhcC--CCCCCEEEEEcCCCCCCCC-
Confidence 33 33446666666666554311 123468999999999999653 3456899999998743322
Q ss_pred ccCcchhhHHHHHHHHHHhHhcCceEEEeeCCCCCCCCcccchhhhhcc
Q 006975 184 KGAAKNDMTRTTMQRAKDAQDLGISIELLPLSPPDEEFKVSHFYADMIG 232 (623)
Q Consensus 184 ~~~~d~~~~~~~~~~a~dL~~~gI~i~l~~i~~~~~~Fd~~~fy~~i~~ 232 (623)
...+..+ ......+|.|..|+++. .+|.. +.+.|-.
T Consensus 196 -----~~~l~~~----~~a~~~~i~i~tiGiG~---~~d~~-~L~~IA~ 231 (464)
T 4fx5_A 196 -----PADLARA----IQSSIGNFTADCRGIGE---DWEPK-ELRKIAD 231 (464)
T ss_dssp -----HHHHHHH----HHHHTTTCEEEEEEESS---SSCHH-HHHHHHH
T ss_pred -----hHHHHHH----HHHhcCCCeEEEEEeCC---ccCHH-HHHHHHH
Confidence 2222222 22345689999898864 34444 5555543
No 20
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=98.02 E-value=0.00011 Score=70.38 Aligned_cols=137 Identities=12% Similarity=0.101 Sum_probs=90.2
Q ss_pred eEEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEecCCCCCCCCCCcEEEecccccc
Q 006975 29 EYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAERE 108 (623)
Q Consensus 29 e~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt~~t~n~~~~~~i~~l~~~~~~ 108 (623)
=-++|+||+|.||. .|+.+...+..++...-+..+.+.||||.|++.. ++. .
T Consensus 7 ~div~vlD~SgSm~-------------~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~----------~~~-----~ 58 (200)
T 1v7p_C 7 IDVVVVCDESNSIY-------------PWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNP----------RVV-----F 58 (200)
T ss_dssp EEEEEEEECCTTCC-------------CHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSE----------EEE-----E
T ss_pred ccEEEEEECCCCcc-------------cHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCc----------eEE-----E
Confidence 35899999999993 1888999999998887666789999999999753 344 5
Q ss_pred cCCCCChHHHHHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHHHH-HhcC--CCCCCCcEEEEEeCCCCCCCCCcc
Q 006975 109 QLDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGL-LRKG--SSKTADKRILLFTNEDDPFGSIKG 185 (623)
Q Consensus 109 ~l~~p~~~~ik~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~~~-f~~~--~~~~~~krI~l~Tn~d~P~~~~~~ 185 (623)
+|... .....+.+.+.. + .+. +....++..||..|.++ |... ......|.|+||||...- ..
T Consensus 59 ~l~~~--~~~~~~~~~i~~----l--~~~---~G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~-~~--- 123 (200)
T 1v7p_C 59 NLNTY--KTKEEMIVATSQ----T--SQY---GGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESH-DG--- 123 (200)
T ss_dssp CTTTC--SSHHHHHHHHHH----C--CCC---CCSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCS-CG---
T ss_pred eCCCc--CCHHHHHHHHHh----h--hcc---CCCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCC-Cc---
Confidence 55532 222223322222 1 000 11246899999999985 7532 234556789999998642 21
Q ss_pred CcchhhHHHHHHHHHHhHhcCceEEEeeCC
Q 006975 186 AAKNDMTRTTMQRAKDAQDLGISIELLPLS 215 (623)
Q Consensus 186 ~~d~~~~~~~~~~a~dL~~~gI~i~l~~i~ 215 (623)
.. .. ..++.+++.||.+..+.++
T Consensus 124 ---~~-~~---~~~~~~~~~gi~i~~igvg 146 (200)
T 1v7p_C 124 ---SM-LK---AVIDQCNHDNILRFGIAVL 146 (200)
T ss_dssp ---GG-HH---HHHHHHHHTTEEEEEEEEC
T ss_pred ---cc-HH---HHHHHHHHCCCEEEEEEec
Confidence 11 22 2345678899999999884
No 21
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=98.00 E-value=0.00019 Score=67.98 Aligned_cols=136 Identities=13% Similarity=0.124 Sum_probs=89.0
Q ss_pred eEEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEecCCCCCCCCCCcEEEecccccc
Q 006975 29 EYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAERE 108 (623)
Q Consensus 29 e~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt~~t~n~~~~~~i~~l~~~~~~ 108 (623)
=-++|+||.|.||.. +.|+.+...+..++...-+....+.||||.|++. ..+. .
T Consensus 6 ~div~vlD~SgSm~~-----------~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~----------~~~~-----~ 59 (189)
T 1atz_A 6 LDVILLLDGSSSFPA-----------SYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSI----------TTID-----V 59 (189)
T ss_dssp EEEEEEEECSSSSCH-----------HHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSS----------EEEE-----E
T ss_pred eeEEEEEeCCCCCCh-----------hhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCc----------ceEE-----E
Confidence 358999999999942 4689999999999888655556799999999874 3344 4
Q ss_pred cCCCC-ChHHHHHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHHHHHhcCC--CCC-CCcEEEEEeCCCCCCCCCc
Q 006975 109 QLDRP-TARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRKGS--SKT-ADKRILLFTNEDDPFGSIK 184 (623)
Q Consensus 109 ~l~~p-~~~~ik~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~~~f~~~~--~~~-~~krI~l~Tn~d~P~~~~~ 184 (623)
++... +.+ .+...+.. + .+ .....++..||..|.+++.... .+. ..|.|+|||++. +...
T Consensus 60 ~l~~~~~~~---~~~~~i~~----l--~~----~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~-~~~~-- 123 (189)
T 1atz_A 60 PWNVVPEKA---HLLSLVDV----M--QR----EGGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDV-SVDS-- 123 (189)
T ss_dssp CTTCCCCHH---HHHHHHHT----C--CC----CCCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSC-CSSC--
T ss_pred ecCCCCCHH---HHHHHHHh----C--cC----CCCcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCC-CCch--
Confidence 55322 333 23333322 1 11 1235689999999998876532 122 334588899874 3221
Q ss_pred cCcchhhHHHHHHHHHHhHhcCceEEEeeCCC
Q 006975 185 GAAKNDMTRTTMQRAKDAQDLGISIELLPLSP 216 (623)
Q Consensus 185 ~~~d~~~~~~~~~~a~dL~~~gI~i~l~~i~~ 216 (623)
. . ..++.+++.||.+..++++.
T Consensus 124 ----~---~---~~~~~~~~~gi~v~~igvG~ 145 (189)
T 1atz_A 124 ----V---D---AAADAARSNRVTVFPIGIGD 145 (189)
T ss_dssp ----C---H---HHHHHHHHTTEEEEEEEESS
T ss_pred ----H---H---HHHHHHHHCCCEEEEEEcCC
Confidence 1 1 23446778999999999964
No 22
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=98.00 E-value=0.00014 Score=79.82 Aligned_cols=160 Identities=9% Similarity=0.083 Sum_probs=100.2
Q ss_pred EEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEecCCCCCCCCCCcEEEeccccccc
Q 006975 30 YVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAEREQ 109 (623)
Q Consensus 30 ~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt~~t~n~~~~~~i~~l~~~~~~~ 109 (623)
-++|+||+|.||.. +.|+.+.+.+..++.+.-.....+.||||.|++. ..+. .+
T Consensus 3 div~vlD~SgSM~~-----------~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~----------~~~~-----~~ 56 (497)
T 1rrk_A 3 NIYLVLDGSDSIGA-----------SNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATY----------PKIW-----VK 56 (497)
T ss_dssp EEEEEEECSTTTCH-----------HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSS----------EEEE-----EC
T ss_pred eEEEEEECCCCcch-----------hhHHHHHHHHHHHHHHhhccCCCceEEEEEecCC----------ceEe-----ec
Confidence 37899999999933 4699999999999988766677899999999964 2344 45
Q ss_pred CCCCChHHHHHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHHHHHhcCCC------CCCCcEEEEEeCCCCCCCCC
Q 006975 110 LDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRKGSS------KTADKRILLFTNEDDPFGSI 183 (623)
Q Consensus 110 l~~p~~~~ik~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~~~f~~~~~------~~~~krI~l~Tn~d~P~~~~ 183 (623)
+..+.......+.+.+..... ..+. .....++..||..|.++|..... ....+.||||||...-.+.
T Consensus 57 ~~~~~~~~~~~~~~~l~~l~~----~~~~--~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~- 129 (497)
T 1rrk_A 57 VSEADSSNADWVTKQLNEINY----EDHK--LKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGG- 129 (497)
T ss_dssp TTSGGGGCHHHHHHHHHHCCG----GGSC--CTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSS-
T ss_pred cccccccCHHHHHHHHHhCcC----cccc--ccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCC-
Confidence 555544444444444443210 0000 12357899999999999843221 3456789999998644332
Q ss_pred ccCcchhhHHHHHHHHHH----------hHhcCceEEEeeCCCCCCCCcccchhhhhccc
Q 006975 184 KGAAKNDMTRTTMQRAKD----------AQDLGISIELLPLSPPDEEFKVSHFYADMIGL 233 (623)
Q Consensus 184 ~~~~d~~~~~~~~~~a~d----------L~~~gI~i~l~~i~~~~~~Fd~~~fy~~i~~~ 233 (623)
+.. .+...+++ +++.||.+..+.++. .+|.. ..+.|...
T Consensus 130 ----~~~---~~~~~~~~~~~~~~~~~~~~~~~i~v~~igvG~---~~~~~-~L~~iA~~ 178 (497)
T 1rrk_A 130 ----DPI---TVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGP---LVNQV-NINALASK 178 (497)
T ss_dssp ----CTH---HHHHHHHHHTTCSSCC-CCCGGGEEEEEEECSS---SCCHH-HHHHHSCC
T ss_pred ----Chh---HHHHHHHHHhhhhcccccchhcCeeEEEecCCC---ccCHH-HHHHHhcC
Confidence 111 12222222 244589999888864 24433 45555443
No 23
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=97.96 E-value=5.1e-05 Score=83.62 Aligned_cols=149 Identities=16% Similarity=0.150 Sum_probs=96.9
Q ss_pred ceEEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEecCCCCCCCCCCcEEEeccccc
Q 006975 28 KEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAER 107 (623)
Q Consensus 28 ke~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt~~t~n~~~~~~i~~l~~~~~ 107 (623)
+=-++|+||.|.||.. ..|+.+.+.+..++++.-+..+.|.||||.|++. ..+.
T Consensus 9 ~~divfvlD~SgSM~~-----------~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~----------~~~~----- 62 (509)
T 2odp_A 9 HLNLYLLLDASQSVSE-----------NDFLIFKESASLMVDRIFSFEINVSVAIITFASE----------PKVL----- 62 (509)
T ss_dssp EEEEEEEEECSTTSCH-----------HHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSS----------EEEE-----
T ss_pred CeeEEEEEeCCCccch-----------hhHHHHHHHHHHHHHHhhccCCCceEEEEEccCC----------Ccee-----
Confidence 4458999999999942 3589999999999988877789999999999874 3444
Q ss_pred ccCCCCChHHHHHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHHHHHhcCCC---------CCCCcEEEEEeCCCC
Q 006975 108 EQLDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRKGSS---------KTADKRILLFTNEDD 178 (623)
Q Consensus 108 ~~l~~p~~~~ik~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~~~f~~~~~---------~~~~krI~l~Tn~d~ 178 (623)
.++..+.......+...+... .++..+.....++..||..|.++|..... ....+.||||||...
T Consensus 63 ~~l~~~~~~~~~~~~~~l~~l------~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~ 136 (509)
T 2odp_A 63 MSVLNDNSRDMTEVISSLENA------NYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKS 136 (509)
T ss_dssp ECTTSGGGGCHHHHHHHHHTC------CGGGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCC
T ss_pred EeccCCCCCCHHHHHHHHHhc------ccccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCc
Confidence 566554433444444444332 11111112357899999999999954221 124478999999864
Q ss_pred CCCCCccCcchhhHHHHHHHHHHhH------hcCceEEEeeCCC
Q 006975 179 PFGSIKGAAKNDMTRTTMQRAKDAQ------DLGISIELLPLSP 216 (623)
Q Consensus 179 P~~~~~~~~d~~~~~~~~~~a~dL~------~~gI~i~l~~i~~ 216 (623)
-.+. +.. .+...++.+. +.||.|..+.++.
T Consensus 137 ~~~~-----~~~---~~~~~~~~~~~~~~~~~~~i~i~~iGvG~ 172 (509)
T 2odp_A 137 NMGG-----SPK---TAVDHIREILNINQKRNDYLDIYAIGVGK 172 (509)
T ss_dssp CSSS-----CTH---HHHHHHHHHTTCCSTTGGGEEEEEEEESS
T ss_pred cCCC-----Chh---HHHHHHHHHhhccccccCceEEEEEEcCC
Confidence 4322 211 1223333332 7789999998865
No 24
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=97.95 E-value=0.00011 Score=69.23 Aligned_cols=136 Identities=14% Similarity=0.137 Sum_probs=86.3
Q ss_pred EEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEecCCCCCCCCCCcEEEeccccccc
Q 006975 30 YVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAEREQ 109 (623)
Q Consensus 30 ~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt~~t~n~~~~~~i~~l~~~~~~~ 109 (623)
-++|+||.|.||-. .+...++.+..++... .++.+.||||.|++.. .+. .+
T Consensus 9 div~vlD~SgSM~~------------~~~~~~~~~~~~~~~~--~~~~~~v~lv~f~~~~----------~~~-----~~ 59 (185)
T 3n2n_F 9 DLYFILDKSGSVLH------------HWNEIYYFVEQLAHKF--ISPQLRMSFIVFSTRG----------TTL-----MK 59 (185)
T ss_dssp EEEEEEECSGGGGG------------GHHHHHHHHHHHHHHC--CCTTEEEEEEEESSSE----------EEE-----EE
T ss_pred eEEEEEeCCCChhh------------hHHHHHHHHHHHHHHh--CCCCcEEEEEEEecCc----------eEE-----ec
Confidence 48899999999943 2667777777777775 3479999999998743 333 44
Q ss_pred CCCCChHHHHHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHHHHHhc--CCCCCCCcEEEEEeCCCCCCCCCccCc
Q 006975 110 LDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRK--GSSKTADKRILLFTNEDDPFGSIKGAA 187 (623)
Q Consensus 110 l~~p~~~~ik~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~~~f~~--~~~~~~~krI~l~Tn~d~P~~~~~~~~ 187 (623)
+.. +.+.+ ...+..... .+ .....++..||..|.+.+.. .......|.|+||||.... .
T Consensus 60 l~~-~~~~~---~~~i~~l~~----~~----~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~-~------ 120 (185)
T 3n2n_F 60 LTE-DREQI---RQGLEELQK----VL----PGGDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELH-E------ 120 (185)
T ss_dssp EEC-CHHHH---HHHHHHHHT----CC----CCSCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCC-H------
T ss_pred cCC-CHHHH---HHHHHHHhh----hc----CCCCccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCC-C------
Confidence 443 43333 222222110 00 12356799999999986632 2222357899999998632 1
Q ss_pred chhhHHHHHHHHHHhHhcCceEEEeeCC
Q 006975 188 KNDMTRTTMQRAKDAQDLGISIELLPLS 215 (623)
Q Consensus 188 d~~~~~~~~~~a~dL~~~gI~i~l~~i~ 215 (623)
.........++.+++.||.+..++++
T Consensus 121 --~~~~~~~~~~~~~~~~gi~i~~igvg 146 (185)
T 3n2n_F 121 --DLFFYSEREANRSRDLGAIVYAVGVK 146 (185)
T ss_dssp --HHHHHHHHHHHHHHHTTEEEEEEECS
T ss_pred --CcccchHHHHHHHHHCCCEEEEEEec
Confidence 11112233566788999999999986
No 25
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=97.95 E-value=0.00015 Score=70.19 Aligned_cols=138 Identities=14% Similarity=0.147 Sum_probs=89.6
Q ss_pred eEEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEecCCCCCCCCCCcEEEecccccc
Q 006975 29 EYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAERE 108 (623)
Q Consensus 29 e~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt~~t~n~~~~~~i~~l~~~~~~ 108 (623)
=-++|+||+|.||. .|+.+.+.+..++...-+..+.+.||||.|++. .++. .
T Consensus 8 ~div~vlD~SgSm~-------------~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~----------~~~~-----~ 59 (213)
T 1pt6_A 8 LDIVIVLDGSNSIY-------------PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGEN----------VTHE-----F 59 (213)
T ss_dssp EEEEEEEECCTTCC-------------CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSS----------EEEE-----E
T ss_pred ccEEEEEECCCChh-------------hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCC----------ccEE-----E
Confidence 45899999999994 178888888888877666678999999999874 3344 5
Q ss_pred cCCCCChHHHHHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHHHH-HhcC--CCCCCCcEEEEEeCCCCCCCCCcc
Q 006975 109 QLDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGL-LRKG--SSKTADKRILLFTNEDDPFGSIKG 185 (623)
Q Consensus 109 ~l~~p~~~~ik~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~~~-f~~~--~~~~~~krI~l~Tn~d~P~~~~~~ 185 (623)
+|.... ....+.+.+.. + .+ .+....++..||..|.++ |... ......|.|+||||... ..+
T Consensus 60 ~l~~~~--~~~~~~~~i~~----l--~~---~~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~-~~~--- 124 (213)
T 1pt6_A 60 NLNKYS--STEEVLVAAKK----I--VQ---RGGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGES-HDN--- 124 (213)
T ss_dssp CTTTCS--SHHHHHHHHHT----C--CC---CCCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCC-SCS---
T ss_pred eccccC--CHHHHHHHHHh----c--cC---CCCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCC-CCC---
Confidence 553322 22222222221 1 00 011235799999999986 6521 23456778999999853 222
Q ss_pred CcchhhHHHHHHHHHHhHhcCceEEEeeCCC
Q 006975 186 AAKNDMTRTTMQRAKDAQDLGISIELLPLSP 216 (623)
Q Consensus 186 ~~d~~~~~~~~~~a~dL~~~gI~i~l~~i~~ 216 (623)
.+ ....++.+++.||.+..++++.
T Consensus 125 ---~~----~~~~~~~~~~~gi~i~~igig~ 148 (213)
T 1pt6_A 125 ---HR----LKKVIQDCEDENIQRFSIAILG 148 (213)
T ss_dssp ---HH----HHHHHHHHHHTTEEEEEEEECH
T ss_pred ---cc----HHHHHHHHHHCCCEEEEEEecc
Confidence 11 2234456788999999998864
No 26
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=97.90 E-value=9.6e-05 Score=85.23 Aligned_cols=164 Identities=9% Similarity=0.093 Sum_probs=100.8
Q ss_pred EEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEecCCCCCCCCCCcEEEeccccccc
Q 006975 30 YVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAEREQ 109 (623)
Q Consensus 30 ~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt~~t~n~~~~~~i~~l~~~~~~~ 109 (623)
-++|+||.|.||.. ..|..+.+++..++.+.-.....|.||||.|++. ..+. .+
T Consensus 245 div~vlD~SgSM~~-----------~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~----------~~~~-----~~ 298 (741)
T 3hrz_D 245 NIYLVLDGSGSIGA-----------SDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATY----------PKIW-----VK 298 (741)
T ss_dssp EEEEEEECSTTTCH-----------HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSS----------EEEE-----EC
T ss_pred eEEEEeccCCcccc-----------cchHHHHHHHHHHHHhhhccCCCceEEEEEeccC----------Ccee-----Ee
Confidence 38999999999933 3489999999999998777778899999999875 3444 55
Q ss_pred CCCCChHHHHHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHHHHHhcCC------CCCCCcEEEEEeCCCCCCCCC
Q 006975 110 LDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRKGS------SKTADKRILLFTNEDDPFGSI 183 (623)
Q Consensus 110 l~~p~~~~ik~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~~~f~~~~------~~~~~krI~l~Tn~d~P~~~~ 183 (623)
|...+......|.+.+... .+.........++..||..|.++|.... .....|.||||||...-.+.
T Consensus 299 l~~~~~~~~~~~~~~i~~l------~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~- 371 (741)
T 3hrz_D 299 VSEADSSNADWVTKQLNEI------NYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGG- 371 (741)
T ss_dssp TTSGGGGCHHHHHHHHTTC------CGGGGSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSS-
T ss_pred ecccCCcCHHHHHHHHHhc------ccccccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCC-
Confidence 5554333333333333321 1100001335689999999999984211 12245679999999644333
Q ss_pred ccCcchhhHHHHHH------HHHHhHhcCceEEEeeCCCCCCCCcccchhhhhccc
Q 006975 184 KGAAKNDMTRTTMQ------RAKDAQDLGISIELLPLSPPDEEFKVSHFYADMIGL 233 (623)
Q Consensus 184 ~~~~d~~~~~~~~~------~a~dL~~~gI~i~l~~i~~~~~~Fd~~~fy~~i~~~ 233 (623)
+ .......+.. .++.+++.||.|..|.++. .+|.. ..+.|...
T Consensus 372 ~---p~~~~~~i~~~~~~~~~a~~~~~~gi~i~~igvG~---~~~~~-~L~~ia~~ 420 (741)
T 3hrz_D 372 D---PITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGP---LVNQV-NINALASK 420 (741)
T ss_dssp C---THHHHHHHHHHTTCSSCTTCCCGGGEEEEEEECSS---SCCHH-HHHHHSCC
T ss_pred C---chHHHHHHHHHhhcccccccccccCeeEEEEeCCC---cCCHH-HHHHHhcC
Confidence 1 1111121111 1235678899999999864 24433 34555443
No 27
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=97.89 E-value=0.00013 Score=71.14 Aligned_cols=138 Identities=16% Similarity=0.178 Sum_probs=89.8
Q ss_pred eEEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEecCCCCCCCCCCcEEEecccccc
Q 006975 29 EYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAERE 108 (623)
Q Consensus 29 e~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt~~t~n~~~~~~i~~l~~~~~~ 108 (623)
=-++|+||+|.||. .|+.+...+..++.+.-+..+.+.||||.|++. .++. .
T Consensus 23 ~div~vlD~SgSM~-------------~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~----------~~~~-----~ 74 (223)
T 2b2x_A 23 LDIVIVLDGSNSIY-------------PWESVIAFLNDLLKRMDIGPKQTQVGIVQYGEN----------VTHE-----F 74 (223)
T ss_dssp EEEEEEEECSTTCC-------------CHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSS----------EEEE-----E
T ss_pred ceEEEEEECCCChh-------------hHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCC----------ccEE-----E
Confidence 34899999999994 188888888888887666678999999999874 3344 5
Q ss_pred cCCCCChHHHHHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHHHH-Hhc--CCCCCCCcEEEEEeCCCCCCCCCcc
Q 006975 109 QLDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGL-LRK--GSSKTADKRILLFTNEDDPFGSIKG 185 (623)
Q Consensus 109 ~l~~p~~~~ik~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~~~-f~~--~~~~~~~krI~l~Tn~d~P~~~~~~ 185 (623)
+|...+ ....+.+.+.. + .. .+....++..||..|.++ |.. .......|.|+||||...- .+
T Consensus 75 ~l~~~~--~~~~~~~~i~~----l----~~-~gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~-~~--- 139 (223)
T 2b2x_A 75 NLNKYS--STEEVLVAANK----I----VQ-RGGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESH-DN--- 139 (223)
T ss_dssp CTTTCC--SHHHHHHHHTT----C----CC-CCCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCT-TG---
T ss_pred ecCCCC--CHHHHHHHHHh----h----hc-cCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCC-CC---
Confidence 553332 22222222221 1 00 011236899999999986 653 1234566789999998632 22
Q ss_pred CcchhhHHHHHHHHHHhHhcCceEEEeeCCC
Q 006975 186 AAKNDMTRTTMQRAKDAQDLGISIELLPLSP 216 (623)
Q Consensus 186 ~~d~~~~~~~~~~a~dL~~~gI~i~l~~i~~ 216 (623)
.+ .. ..++.+++.||.|..++++.
T Consensus 140 ---~~-~~---~~~~~~~~~gi~v~~igvG~ 163 (223)
T 2b2x_A 140 ---YR-LK---QVIQDCEDENIQRFSIAILG 163 (223)
T ss_dssp ---GG-HH---HHHHHHHTTTEEEEEEEECG
T ss_pred ---cc-HH---HHHHHHHHCCCEEEEEEecC
Confidence 11 22 23456788999999999864
No 28
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=97.71 E-value=0.00017 Score=68.21 Aligned_cols=111 Identities=17% Similarity=0.181 Sum_probs=74.2
Q ss_pred ceEEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEecCCCCCCCCCCcEEEeccccc
Q 006975 28 KEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAER 107 (623)
Q Consensus 28 ke~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt~~t~n~~~~~~i~~l~~~~~ 107 (623)
.-.++||||+|.||.. +.|..+.+++..++.+. ..+.|.||||.|++... .++
T Consensus 5 ~~~vv~vlD~SgSM~~-----------~~~~~~k~~~~~~~~~~--~~~~~~v~lv~f~~~~~---------~~~----- 57 (189)
T 2x31_A 5 DRVLIFAVDASGSAAV-----------ARLSEAKGAVELLLGRA--YAARDHVSLITFRGTAA---------QVL----- 57 (189)
T ss_dssp CCEEEEEEECCTTSCC-------------CHHHHHHHHHHHHHS--CTTTSCCCEEEESBSCC---------CBC-----
T ss_pred CeEEEEEEECCCCCCc-----------hHHHHHHHHHHHHHHHh--cCCCcEEEEEEECCCCc---------eEe-----
Confidence 3468999999999941 34788888888888654 46899999999997432 122
Q ss_pred ccCCCCChHHHHHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 006975 108 EQLDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRKGSSKTADKRILLFTNEDDPF 180 (623)
Q Consensus 108 ~~l~~p~~~~ik~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~~~f~~~~~~~~~krI~l~Tn~d~P~ 180 (623)
.++.. +. ..+...+... ......++..+|..|.+++.........+.|+||||.....
T Consensus 58 ~~~~~-~~---~~~~~~i~~l-----------~~~g~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~ 115 (189)
T 2x31_A 58 LQPSR-SL---TQTKRQLQGL-----------PGGGGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNI 115 (189)
T ss_dssp TTTCS-CH---HHHHHHHHHC-----------CCCBCCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSS
T ss_pred cCCCC-CH---HHHHHHHhcC-----------CCCCCCCHHHHHHHHHHHHHhccCCCCceEEEEECCCCCCC
Confidence 33322 33 2333333221 01235679999999999997654445678999999986543
No 29
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=97.64 E-value=4.9e-05 Score=72.47 Aligned_cols=138 Identities=14% Similarity=0.106 Sum_probs=86.2
Q ss_pred eEEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEecCCCCCCCCCCcEEEecccccc
Q 006975 29 EYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAERE 108 (623)
Q Consensus 29 e~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt~~t~n~~~~~~i~~l~~~~~~ 108 (623)
=-++|+||+|.||.. ..|..++.++..++.... .+.+.||||.|++.. .+. .
T Consensus 10 ~div~vlD~SgSM~~-----------~~~~~~~~~~~~~~~~l~--~~~~~v~lv~f~~~~----------~~~-----~ 61 (198)
T 1n3y_A 10 QDIVFLIDGSGSISS-----------RNFATMMNFVRAVISQFQ--RPSTQFSLMQFSNKF----------QTH-----F 61 (198)
T ss_dssp EEEEEEEECCTTSCH-----------HHHHHHHHHHHHHHTTSC--TTTEEEEEEEESSSE----------EEE-----E
T ss_pred eeEEEEEECCCCCCH-----------HHHHHHHHHHHHHHHhcC--CCCcEEEEEEeCCCc----------cEE-----E
Confidence 458999999999943 247788888888887765 789999999999862 333 3
Q ss_pred cCCCCChHHHHHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHH-HHHhcC--CCCCCCcEEEEEeCCCCCCCCCcc
Q 006975 109 QLDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQ-GLLRKG--SSKTADKRILLFTNEDDPFGSIKG 185 (623)
Q Consensus 109 ~l~~p~~~~ik~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~-~~f~~~--~~~~~~krI~l~Tn~d~P~~~~~~ 185 (623)
++. .......+... +.. ... .....++..||..|. .+|... ......+.|+||||...-.+.
T Consensus 62 ~~~-----~~~~~~~~~~~----i~~-l~~--~~g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~--- 126 (198)
T 1n3y_A 62 TFE-----EFRRSSNPLSL----LAS-VHQ--LQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDS--- 126 (198)
T ss_dssp CHH-----HHHHCSSGGGG----GTT-CCC--CCSCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCS---
T ss_pred ecC-----ccCCHHHHHHH----Hhc-CcC--CCCCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCc---
Confidence 321 11111111111 100 000 123568999999999 556532 134456789999998632111
Q ss_pred CcchhhHHHHHHHHHHhHhcCceEEEeeCCC
Q 006975 186 AAKNDMTRTTMQRAKDAQDLGISIELLPLSP 216 (623)
Q Consensus 186 ~~d~~~~~~~~~~a~dL~~~gI~i~l~~i~~ 216 (623)
.. ... .++.++..||.|..+.++.
T Consensus 127 ---~~-~~~---~~~~~~~~gi~i~~igvG~ 150 (198)
T 1n3y_A 127 ---LD-YKD---VIPMADAAGIIRYAIGVGL 150 (198)
T ss_dssp ---SC-HHH---HHHHHHHTTCEEEEEEESG
T ss_pred ---cc-HHH---HHHHHHHCCCEEEEEEccc
Confidence 11 122 3446788999999999965
No 30
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=97.41 E-value=0.00033 Score=66.53 Aligned_cols=139 Identities=9% Similarity=0.082 Sum_probs=84.7
Q ss_pred ceEEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEecCCCCCCCCCCcEEEeccccc
Q 006975 28 KEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAER 107 (623)
Q Consensus 28 ke~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt~~t~n~~~~~~i~~l~~~~~ 107 (623)
+=-++|+||.|.||.. +.|+.+.+++..++.+.- .+.+.||||.|++.. .+.
T Consensus 5 ~~div~vlD~SgSm~~-----------~~~~~~k~~~~~~~~~l~--~~~~~v~vv~f~~~~----------~~~----- 56 (194)
T 1mf7_A 5 DSDIAFLIDGSGSIIP-----------HDFRRMKEFVSTVMEQLK--KSKTLFSLMQYSEEF----------RIH----- 56 (194)
T ss_dssp CEEEEEEEECCTTSCH-----------HHHHHHHHHHHHHHHHHC--CTTEEEEEEEESSSE----------EEE-----
T ss_pred CeeEEEEEeCCCCCCH-----------HHHHHHHHHHHHHHHhcC--CCCeEEEEEEecCCc----------eEE-----
Confidence 3458899999999932 358888888888887654 568999999998753 233
Q ss_pred ccCCCCChHHHHHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHHH-HHhcC--CCCCCCcEEEEEeCCCCCCCCCc
Q 006975 108 EQLDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQG-LLRKG--SSKTADKRILLFTNEDDPFGSIK 184 (623)
Q Consensus 108 ~~l~~p~~~~ik~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~~-~f~~~--~~~~~~krI~l~Tn~d~P~~~~~ 184 (623)
.++... .....+...+.. + .+ .....++..||..|.+ +|... ......|.|+||||...- ..
T Consensus 57 ~~l~~~--~~~~~~~~~i~~----l--~~----~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~-~d-- 121 (194)
T 1mf7_A 57 FTFKEF--QNNPNPRSLVKP----I--TQ----LLGRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKF-GD-- 121 (194)
T ss_dssp ECHHHH--HHSCCHHHHHTT----C--CC----CCSCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCB-SC--
T ss_pred EecCCc--CCHHHHHHHHHh----C--cC----CCCCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCC-CC--
Confidence 333111 011111111111 1 11 1235689999999986 55431 223356789999998632 11
Q ss_pred cCcchhhHHHHHHHHHHhHhcCceEEEeeCCC
Q 006975 185 GAAKNDMTRTTMQRAKDAQDLGISIELLPLSP 216 (623)
Q Consensus 185 ~~~d~~~~~~~~~~a~dL~~~gI~i~l~~i~~ 216 (623)
... ... .++.+++.||.+..++++.
T Consensus 122 ---~~~-~~~---~~~~~~~~gi~v~~igvG~ 146 (194)
T 1mf7_A 122 ---PLG-YED---VIPEADREGVIRYVIGVGD 146 (194)
T ss_dssp ---SSC-GGG---THHHHHHTTEEEEEEEESG
T ss_pred ---chh-hHH---HHHHHHHCCCEEEEEEecc
Confidence 000 111 2345678899999999864
No 31
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=97.26 E-value=0.0004 Score=66.52 Aligned_cols=144 Identities=11% Similarity=0.077 Sum_probs=91.4
Q ss_pred eEEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEecCCCCCCCCCCcEEEecccccc
Q 006975 29 EYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAERE 108 (623)
Q Consensus 29 e~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt~~t~n~~~~~~i~~l~~~~~~ 108 (623)
-=++|+||.|.||.. ..|..+.+++..++.+..+..+.+.||||.|++.. .+. .
T Consensus 22 ~DivfvlD~S~Sm~~-----------~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~----------~~~-----~ 75 (199)
T 3zqk_A 22 LDVAFVLEGSDKIGE-----------ADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMV----------TVE-----Y 75 (199)
T ss_dssp CEEEEEEECCTTTCH-----------HHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSE----------EEE-----E
T ss_pred cCEEEEEECCCCCCH-----------HHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcc----------cEE-----E
Confidence 348899999999932 35899999999999988888889999999999853 334 4
Q ss_pred cCCCC-ChHHHHHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHHHH-HhcC--CCCCCCcEEEEEeCCCCCCCCCc
Q 006975 109 QLDRP-TARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGL-LRKG--SSKTADKRILLFTNEDDPFGSIK 184 (623)
Q Consensus 109 ~l~~p-~~~~ik~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~~~-f~~~--~~~~~~krI~l~Tn~d~P~~~~~ 184 (623)
+|... +.+ .+...+.. + .+. +.....+..||..+.+. |... ......|.|+||||... .+.
T Consensus 76 ~l~~~~~~~---~~~~~i~~----l--~~~---gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~-~d~-- 140 (199)
T 3zqk_A 76 PFSEAQSKG---DILQRLRE----I--RYQ---GGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPA-SDE-- 140 (199)
T ss_dssp CTTSCCCHH---HHHHHHHH----C--CCC---CCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCC-SSC--
T ss_pred ecCCcCCHH---HHHHHHHh----C--cCC---CCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCC-chH--
Confidence 55432 222 23222222 1 111 12236799999998874 5422 23345678999998852 211
Q ss_pred cCcchhhHHHHHHHHHHhHhcCceEEEeeCCCCCCCCcccchhhhhcc
Q 006975 185 GAAKNDMTRTTMQRAKDAQDLGISIELLPLSPPDEEFKVSHFYADMIG 232 (623)
Q Consensus 185 ~~~d~~~~~~~~~~a~dL~~~gI~i~l~~i~~~~~~Fd~~~fy~~i~~ 232 (623)
.. .+ ..||.|..++++. ..|.. ....|..
T Consensus 141 ----v~----------~~-~~~v~v~~iGiG~---~~~~~-~L~~iA~ 169 (199)
T 3zqk_A 141 ----IK----------RL-PGDIQVVPIGVGP---NANVQ-ELERIGW 169 (199)
T ss_dssp ----CC----------CC-CTTEEEEEEEEST---TCCHH-HHHHHHT
T ss_pred ----HH----------HH-hCCCEEEEEEcCC---CCCHH-HHHHHhC
Confidence 00 11 1588888888864 24443 4555543
No 32
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=96.86 E-value=0.0019 Score=60.55 Aligned_cols=130 Identities=14% Similarity=0.123 Sum_probs=80.5
Q ss_pred EEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEecCCCCCCCCCCcEEEeccccccc
Q 006975 30 YVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAEREQ 109 (623)
Q Consensus 30 ~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt~~t~n~~~~~~i~~l~~~~~~~ 109 (623)
-++|+||.|.||.. ..|..+.+++..++.+. ....+.||||.|++.. .+. .+
T Consensus 4 divfvlD~S~Sm~~-----------~~~~~~k~~~~~~~~~l--~~~~~rv~vv~fs~~~----------~~~-----~~ 55 (179)
T 1mjn_A 4 DLVFLFDGSMSLQP-----------DEFQKILDFMKDVMKKC--SNTSYQFAAVQFSTSY----------KTE-----FD 55 (179)
T ss_dssp EEEEEEECBTTCCH-----------HHHHHHHHHHHHHHHHT--TTSSEEEEEEEESSSE----------EEE-----EC
T ss_pred cEEEEEeCCCCCCH-----------HHHHHHHHHHHHHHHHh--CCCCeEEEEEEECCce----------eEE-----Ec
Confidence 47899999999932 35899999999988874 4456799999999753 233 33
Q ss_pred CCCCChHHHHHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHHH-HHhcC--CCCCCCcEEEEEeCCCCCCCCCccC
Q 006975 110 LDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQG-LLRKG--SSKTADKRILLFTNEDDPFGSIKGA 186 (623)
Q Consensus 110 l~~p~~~~ik~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~~-~f~~~--~~~~~~krI~l~Tn~d~P~~~~~~~ 186 (623)
|... ..-..+..++.. +. .. ....++..||..|.+ +|... ......|.|+||||...- .+.
T Consensus 56 l~~~--~~~~~~~~~~~~----i~----~~--~g~T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~-~~~--- 119 (179)
T 1mjn_A 56 FSDY--VKRKDPDALLKH----VK----HM--LLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEAT-DSG--- 119 (179)
T ss_dssp HHHH--HHHCCHHHHHTT----CC----CC--CBCCCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCS-SCS---
T ss_pred Cccc--CCHHHHHHHHHh----cc----cC--CCCChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCC-CCc---
Confidence 2211 111112222221 11 10 124679999999985 67532 233456789999998632 221
Q ss_pred cchhhHHHHHHHHHHhHhcCceEEEeeCCC
Q 006975 187 AKNDMTRTTMQRAKDAQDLGISIELLPLSP 216 (623)
Q Consensus 187 ~d~~~~~~~~~~a~dL~~~gI~i~l~~i~~ 216 (623)
.. ....||.+..+.++.
T Consensus 120 -~~------------~~~~~i~i~~igvG~ 136 (179)
T 1mjn_A 120 -NI------------DAAKDIIRYIIGIGK 136 (179)
T ss_dssp -CC------------GGGTTSEEEEEEESG
T ss_pred -ch------------HHHCCCEEEEEEccc
Confidence 11 135689998888864
No 33
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=96.86 E-value=0.0032 Score=73.62 Aligned_cols=137 Identities=15% Similarity=0.117 Sum_probs=78.3
Q ss_pred EEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEecCCCCC-----------------
Q 006975 30 YVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKN----------------- 92 (623)
Q Consensus 30 ~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt~~t~n----------------- 92 (623)
-|+||||+|.||..... ...+.++.+.+++..++ +.+..++.|.||||.|++.....
T Consensus 226 DIVfVLD~SGSM~~~~~-----~~~~Rl~~~K~a~~~~l-d~L~~~~~drVgLV~Fs~~a~~~~~~~v~~~~~~~~g~~~ 299 (893)
T 2ww8_A 226 DVVILLDNSNSMSNIRN-----KNARRAERAGEATRSLI-DKITSDSENRVALVTYASTIFDGTEFTVEKGVADKNGKRL 299 (893)
T ss_dssp EEEEEEECCGGGCTTHH-----HHCCHHHHHHHHHHHHH-HHHHTSTTCEEEEEEESSSBCBSCEEEEECCEECTTCCEE
T ss_pred cEEEEEeCCCCCCCcCc-----cchhHHHHHHHHHHHHH-HHhhcCCCcEEEEEEecCcccccccccccccccccccccc
Confidence 48999999999965321 11246777788888888 44445689999999999864210
Q ss_pred -CC---CCC-cEEEecccccccCC----CCChHHHHHHHHHHHhHhhhhcccccc--cCCCCCCCHHHHHHHHHHHHhcC
Q 006975 93 -LQ---DLN-AVFVFNVAEREQLD----RPTARFIKEFDHIEESFEKEIGSQYGI--VSGSRENSLYNALWVAQGLLRKG 161 (623)
Q Consensus 93 -~~---~~~-~i~~l~~~~~~~l~----~p~~~~ik~L~~l~~~~~~~~~~~~~~--~~~~~~~~l~daL~~a~~~f~~~ 161 (623)
.. .|. ..+.. ...++. ..+...|..|...+......+ -|. ........+..||..|.++|...
T Consensus 300 n~~~~w~~~~t~~t~---~~~~~~~lpLT~d~~~i~~lk~~I~~~~~~~---~G~~~l~~~GGT~i~~AL~~A~~lL~~~ 373 (893)
T 2ww8_A 300 NDSLFWNYDQTSFTT---NTKDYSYLKLTNDKNDIVELKNKVPTEAEDH---DGNRLMYQFGATFTQKALMKADEILTQQ 373 (893)
T ss_dssp CCCTTSCTTCCEEEE---ECCBCCEEEEECCHHHHHHHHHHSCSCCCCS---CTTSGGGGGCSCCHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccc---cccccccccccCCHHHHHHHHHHHhhhcccc---ccccccccCCCChHHHHHHHHHHHHHhh
Confidence 00 000 01110 001111 114556666655543210000 000 00022457999999999999743
Q ss_pred CCCCCCcEEEEEeCCCC
Q 006975 162 SSKTADKRILLFTNEDD 178 (623)
Q Consensus 162 ~~~~~~krI~l~Tn~d~ 178 (623)
......|.|||+||...
T Consensus 374 ~~~~~~kvIILLTDG~p 390 (893)
T 2ww8_A 374 ARQNSQKVIFHITDGVP 390 (893)
T ss_dssp SCSSSEEEEEEEESSCC
T ss_pred cccCCCeEEEEEcCCCC
Confidence 33355788999999853
No 34
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=96.20 E-value=0.0066 Score=72.83 Aligned_cols=137 Identities=14% Similarity=0.079 Sum_probs=85.4
Q ss_pred EEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEecCCCCCCCCCCcEEEeccccccc
Q 006975 30 YVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAEREQ 109 (623)
Q Consensus 30 ~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt~~t~n~~~~~~i~~l~~~~~~~ 109 (623)
=|+|+||.|.||.. ..|..+.+++..++.+.. ...+.||||.|++.. .+. .+
T Consensus 132 DIvfvlD~SgSm~~-----------~~f~~~k~fv~~lv~~~~--~~~~rVglV~Fs~~~----------~~~-----~~ 183 (1095)
T 3k6s_A 132 DIVFLIDGSGSISS-----------RNFATMMNFVRAVISQFQ--RPSTQFSLMQFSNKF----------QTH-----FT 183 (1095)
T ss_dssp EEEEEEECCTTSCS-----------HHHHHHHHHHHHHHHSSC--SSSEEEEEEEESSSE----------EEE-----EC
T ss_pred cEEEEEcCCCCCCh-----------hHHHHHHHHHHHHHHhcc--ccccEEEEEEECCeE----------EEE-----ec
Confidence 48899999999932 358999999999888754 557999999998853 333 33
Q ss_pred CCCCChHHHHHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHHH-HHhcC--CCCCCCcEEEEEeCCCCCCCCCccC
Q 006975 110 LDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQG-LLRKG--SSKTADKRILLFTNEDDPFGSIKGA 186 (623)
Q Consensus 110 l~~p~~~~ik~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~~-~f~~~--~~~~~~krI~l~Tn~d~P~~~~~~~ 186 (623)
|... .....+...+.. +. . ......+..||..|.+ +|... ......|.|+||||...-.+.
T Consensus 184 lt~~--~~~~~l~~ai~~----i~----~--~gG~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d~---- 247 (1095)
T 3k6s_A 184 FEEF--RRSSNPLSLLAS----VH----Q--LQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDS---- 247 (1095)
T ss_dssp SHHH--HSCSCGGGGTTT----CC----C--CCSCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSCS----
T ss_pred Cccc--CCHHHHHHHHhh----hh----c--ccCCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCCc----
Confidence 3210 000011111111 10 0 1224679999999976 55432 234567889999998643221
Q ss_pred cchhhHHHHHHHHHHhHhcCceEEEeeCCC
Q 006975 187 AKNDMTRTTMQRAKDAQDLGISIELLPLSP 216 (623)
Q Consensus 187 ~d~~~~~~~~~~a~dL~~~gI~i~l~~i~~ 216 (623)
.... ..|+.+++.||.+-.+.++.
T Consensus 248 ---~~~~---~~a~~~r~~GI~i~aIGVG~ 271 (1095)
T 3k6s_A 248 ---LDYK---DVIPMADAAGIIRYAIGVGL 271 (1095)
T ss_dssp ---SCHH---HHHHHHHHHCEEECCEEBSS
T ss_pred ---hhHH---HHHHHHHHCCCEEEEEeccc
Confidence 1122 23446778899988888865
No 35
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp}
Probab=96.16 E-value=0.0022 Score=52.88 Aligned_cols=39 Identities=36% Similarity=0.487 Sum_probs=35.6
Q ss_pred HcCCcccccHHHHHHHHHHcCCCCCCChHHHHHHHHHhh
Q 006975 583 DKGKLKEMTVQELKLYLMAHNLSTTGRKETLISRILTHM 621 (623)
Q Consensus 583 ~~g~l~kltv~~LK~~l~~~~~~~~gkK~dLi~~i~~~l 621 (623)
...+|+-|.+-+||+.|...|++..|||+|||+||...|
T Consensus 13 Ck~kl~~frikelkdvl~~lgl~kqgkKqdL~Dril~ll 51 (110)
T 2rno_A 13 CKDKLAYFRIKELKDILNQLGLPKQGKKQDLIDRVLALL 51 (110)
T ss_dssp HHHHHHHSCHHHHHHHHHHHTCCSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHhCCcccCccHHHHHHHHHHc
Confidence 456788999999999999999999999999999998765
No 36
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=95.44 E-value=0.063 Score=52.70 Aligned_cols=96 Identities=10% Similarity=0.002 Sum_probs=64.2
Q ss_pred cceEEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEecCCCCCCCCCCcEEEecccc
Q 006975 27 TKEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAE 106 (623)
Q Consensus 27 ~ke~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt~~t~n~~~~~~i~~l~~~~ 106 (623)
.+=-++||||+|.||-. .|..+..++.+++...-..+..++||||.|+.+... .+ .++
T Consensus 133 ~~~~vvfLVDtSgSM~~------------kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~---~~---~ll---- 190 (242)
T 3rag_A 133 VALHLVVCLDTSASMRD------------KIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEE---AT---RLV---- 190 (242)
T ss_dssp SCEEEEEEEECSGGGTT------------THHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTC---SC---EEE----
T ss_pred CCCCEEEEEECcccHHH------------HHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCcc---ce---eec----
Confidence 45678999999999941 288888888888887766778999999999986421 11 122
Q ss_pred cccCCCCChHHHHHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHHHHHhcC
Q 006975 107 REQLDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRKG 161 (623)
Q Consensus 107 ~~~l~~p~~~~ik~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~~~f~~~ 161 (623)
+++.... ..-+.|..|. .....++..||..|.++|...
T Consensus 191 -~pfT~~~-~~~~~l~~L~---------------agG~Tplg~AL~~A~~~~~~~ 228 (242)
T 3rag_A 191 -QPFSSEV-NVAALEAELV---------------ARGGTPTGPAIDHAADLLLSH 228 (242)
T ss_dssp -EEEESSC-CHHHHHHHCC---------------CCSCCCHHHHHHHHHHHHHHH
T ss_pred -CCCCChH-HHHHHHhhCC---------------CCCCCcHHHHHHHHHHHHHHH
Confidence 2443333 2112233221 123467999999999999643
No 37
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=95.14 E-value=0.27 Score=54.27 Aligned_cols=106 Identities=12% Similarity=0.109 Sum_probs=56.9
Q ss_pred eEEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEecCCCCCCCCCCcEEEecccccc
Q 006975 29 EYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAERE 108 (623)
Q Consensus 29 e~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt~~t~n~~~~~~i~~l~~~~~~ 108 (623)
--++|+||+|.||..... + .+ +.. .+.+.. ..-+...+.|.||||.|++. ++. .
T Consensus 369 ~~v~lvvD~SgSM~~~~~----~--~~-l~~-~~~Aa~--l~~~~~~~~d~vglv~Fs~~-----------~~~-----~ 422 (538)
T 1yvr_A 369 KRFLLAIDVSASMNQRVL----G--SI-LNA-SVVAAA--MCMLVARTEKDSHMVAFSDE-----------MLP-----C 422 (538)
T ss_dssp CCEEEEEECSGGGGSBST----T--SS-CBH-HHHHHH--HHHHHHHHCSSEEEEEESSS-----------EEC-----C
T ss_pred ceEEEEEECccccCCCCC----C--Cc-HHH-HHHHHH--HHHHHhccCCceEEEEECCC-----------ceE-----c
Confidence 458899999999986542 1 11 222 222111 11223346899999999852 112 2
Q ss_pred cCCCCChHHHHHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 006975 109 QLDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRKGSSKTADKRILLFTNEDDPF 180 (623)
Q Consensus 109 ~l~~p~~~~ik~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~~~f~~~~~~~~~krI~l~Tn~d~P~ 180 (623)
++.. +.. +..+-+.+.. . + ....++..+|..|.+. ....+.||||||...-.
T Consensus 423 ~~t~-~~~-l~~~l~~l~~-------~----~-~GgT~i~~aL~~a~~~------~~~~~~iIliTDg~~~~ 474 (538)
T 1yvr_A 423 PITV-NML-LHEVVEKMSD-------I----T-MGSTDCALPMLWAQKT------NTAADIFIVFTDCETNV 474 (538)
T ss_dssp SCCT-TSC-HHHHHHHHTT-------C----C-CSCCCTTHHHHHHHHT------TCCCSEEEEEECCCCCS
T ss_pred CCCC-ccc-HHHHHHHHhc-------C----C-CCCCcHHHHHHHHHhc------cCCCCEEEEEcCCCCCC
Confidence 3321 111 2222111111 0 0 1245677888887764 23357999999986543
No 38
>2out_A MU-like prophage flumu protein GP35, protein HI1507 in MU-like prophage flumu region...; structural genomics, hypothetical protein; NMR {Haemophilus influenzae} SCOP: a.140.3.2 d.344.1.1
Probab=94.60 E-value=0.015 Score=50.71 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=31.2
Q ss_pred CCcccccHHHHHHHHHHcCCC--CCCChHHHHHHHHHh
Q 006975 585 GKLKEMTVQELKLYLMAHNLS--TTGRKETLISRILTH 620 (623)
Q Consensus 585 g~l~kltv~~LK~~l~~~~~~--~~gkK~dLi~~i~~~ 620 (623)
-.|++|||++||+.|...|+. .+.||+|||+.+...
T Consensus 87 ~~l~~lTV~ELKa~Lde~gIe~~ssakKaELiaLL~~a 124 (131)
T 2out_A 87 TDLNTFTVEQLKAQLTERGITFKQSATKAELIALFAPA 124 (131)
T ss_dssp CSSTTCCSHHHHHHHHHHTCCCSSSCCSHHHHHHCCSC
T ss_pred CccccccHHHHHHHHHHcCCcccccCCHHHHHHHHHHh
Confidence 568899999999999999998 455999999987653
No 39
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=94.57 E-value=0.33 Score=53.55 Aligned_cols=137 Identities=9% Similarity=0.037 Sum_probs=73.8
Q ss_pred ceEEEEEEECCccccC-CCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEecCCCCCCCCCCcEEEecccc
Q 006975 28 KEYVVYLVDASPKMFS-TTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAE 106 (623)
Q Consensus 28 ke~iiflIDvs~sM~~-~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt~~t~n~~~~~~i~~l~~~~ 106 (623)
.--++++||+|.||.. +.. .....+.++.|...+ -+....+|.|||++|++. +..
T Consensus 362 ~~~~lv~vDvSgSM~~~~~~---~~~k~~~~e~Aa~la------~~~~r~~d~v~lv~Fs~~----------~~~----- 417 (535)
T 2nvo_A 362 NTRHLLALDVSGSMTCGDVA---GVPGLTPNMAAAAMS------LIALRTEPDALTMGFAEQ----------FRP----- 417 (535)
T ss_dssp CSEEEEEECCSGGGGSCCGG---GCTTCCHHHHHHHHH------HHHHHHSSEEEEEEEBSS----------EEE-----
T ss_pred CceEEEEEECCccccCCCCC---CCCcccHHHHHHHHH------HHHcCcCCceEEEEECCc----------ceE-----
Confidence 4567888899999976 321 001234555554333 222346889999999862 111
Q ss_pred cccCCCCChHHH-HHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCCCcc
Q 006975 107 REQLDRPTARFI-KEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIKG 185 (623)
Q Consensus 107 ~~~l~~p~~~~i-k~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~~~f~~~~~~~~~krI~l~Tn~d~P~~~~~~ 185 (623)
.++.. . ..+ +.|+.+.. .. ....++..+|..+.+. +....+||||||.+...+..
T Consensus 418 -~~~~~-~-~~l~~~l~~l~~--------~~-----~ggTdi~~~l~~a~~~------~~~~~~vIliTD~~~~~g~~-- 473 (535)
T 2nvo_A 418 -LGITP-R-DTLESAMQKAQS--------VS-----FGGTDCAQPILWAAQE------RLDVDTFVVYTDNETWAGQV-- 473 (535)
T ss_dssp -CCCCT-T-CCHHHHHHHTCC--------SS-----BCCCCTTHHHHHHHHT------TCCCSEEEEEESSCCCCCSS--
T ss_pred -cCCCc-c-hhHHHHHHHHhh--------CC-----CCCccHHHHHHHHHHh------cCCCCEEEEEeCCCccCCCC--
Confidence 12211 2 222 22332211 10 1234566666444322 23458999999997765431
Q ss_pred CcchhhHHHHHHHHHHhHhcCceEEEeeCCCC
Q 006975 186 AAKNDMTRTTMQRAKDAQDLGISIELLPLSPP 217 (623)
Q Consensus 186 ~~d~~~~~~~~~~a~dL~~~gI~i~l~~i~~~ 217 (623)
+ ..++...++.....++.|..+.++..
T Consensus 474 --~---~~~al~~~r~~~~~~~klv~i~l~~~ 500 (535)
T 2nvo_A 474 --H---PTVALDQYAQKMGRAPKLIVVGLTAT 500 (535)
T ss_dssp --C---HHHHHHHHHHHHSCCCEEEEEETTCS
T ss_pred --C---HHHHHHHHHHhhCCCCeEEEEeccCC
Confidence 1 12344444444455788888888754
No 40
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=93.79 E-value=0.48 Score=45.58 Aligned_cols=115 Identities=10% Similarity=0.029 Sum_probs=62.1
Q ss_pred EEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEecCCCCCCCCCCcEEEeccccccc
Q 006975 30 YVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNLQDLNAVFVFNVAEREQ 109 (623)
Q Consensus 30 ~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt~~t~n~~~~~~i~~l~~~~~~~ 109 (623)
-++||+|+|-||... ++...+.+.+++++.--..++=.+|++.|.-. +|.|+.-+
T Consensus 5 Dl~fl~D~S~SM~~d------------i~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk------~~~~~l~l------- 59 (212)
T 2iue_A 5 DLYFLMGLSGSAQGH------------LSNVQTLGSDLLKALNEISRSGRIGFGSIVNM------TFQHILKL------- 59 (212)
T ss_dssp EEEEEEECCGGGTTT------------HHHHHHHHHHHHHHHHHHCSCEEEEEEEESSS------CEEEEEEE-------
T ss_pred EEEEEEeCCCcchhH------------HHHHHHHHHHHHHHHHhhCcCceEEEEEEEcC------cceecCCc-------
Confidence 378999999999442 45555555555544332346789999888643 46554444
Q ss_pred CCCCChHHHHHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCC
Q 006975 110 LDRPTARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGS 182 (623)
Q Consensus 110 l~~p~~~~ik~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~~~f~~~~~~~~~krI~l~Tn~d~P~~~ 182 (623)
.-+ ...+.+.+... .+ .|. ...+-.-.+||+.|.........+. .+|+++|+-+..||..
T Consensus 60 --T~d---~~~F~~~v~~~--~v---sg~--~D~PE~g~dal~qa~~c~~~i~Wr~-a~rllvl~TDa~~H~~ 119 (212)
T 2iue_A 60 --TAD---SSQFQRELRKQ--LV---SGK--LATPKGQLDAVVQVAICLGEIGWRN-GTRFLVLVTDNDFHLA 119 (212)
T ss_dssp --ESC---HHHHHHHHHTC--CC---CCC--SSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEECSSCBCCT
T ss_pred --CCC---HHHHHHHHhhc--cc---cCC--CCCCchHHHHHHHHHHhhhhcccCC-ccEEEEEECcCCcccc
Confidence 112 22222222221 00 010 1345567788877765433223233 5566666665567765
No 41
>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens}
Probab=93.32 E-value=0.043 Score=48.69 Aligned_cols=40 Identities=25% Similarity=0.309 Sum_probs=36.8
Q ss_pred cCCcccccHHHHHHHHHHcCCCCCCChHHHHHHHHHhhcC
Q 006975 584 KGKLKEMTVQELKLYLMAHNLSTTGRKETLISRILTHMGK 623 (623)
Q Consensus 584 ~g~l~kltv~~LK~~l~~~~~~~~gkK~dLi~~i~~~l~~ 623 (623)
...|.++|+..|+++|...+++.+|+|.+|+++|.+||.+
T Consensus 69 ~e~l~K~~~~~L~~~c~iL~l~~~g~keelv~ril~FL~~ 108 (131)
T 2jx3_A 69 EEMLKKFRNAMLKSICEVLDLERSGVNSELVKRILNFLMH 108 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCSCSCHHHHHHHHHHTTTS
T ss_pred HHHHHccCHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhC
Confidence 4568899999999999999999999999999999999863
No 42
>1v66_A Protein inhibitor of activated STAT protein 1; four helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=93.17 E-value=0.091 Score=39.93 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=33.5
Q ss_pred CcccccHHHHHHHHHHcCCCCCCChHHHHHHHHHhhc
Q 006975 586 KLKEMTVQELKLYLMAHNLSTTGRKETLISRILTHMG 622 (623)
Q Consensus 586 ~l~kltv~~LK~~l~~~~~~~~gkK~dLi~~i~~~l~ 622 (623)
.+..|.|++|..-|...|.+.+|+|.||+.|+-..|.
T Consensus 10 Mv~sfRVsELq~LLg~~gr~KsGrK~eL~~RaL~LL~ 46 (65)
T 1v66_A 10 MVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLK 46 (65)
T ss_dssp HHTTCCHHHHHHHHHTTCCCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHcCCCCcCcHHHHHHHHHHHHH
Confidence 4577999999999999999999999999999987664
No 43
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=92.05 E-value=1.3 Score=50.05 Aligned_cols=45 Identities=13% Similarity=0.001 Sum_probs=28.9
Q ss_pred EEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEec
Q 006975 31 VVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNT 87 (623)
Q Consensus 31 iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt 87 (623)
+.||+|+|-||... ++...+.+..|++..--...+=.+|+..|.-
T Consensus 114 ly~LmD~S~SM~dd------------i~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~D 158 (690)
T 3fcs_B 114 IYYLMDLSYSMKDD------------LWSIQNLGTKLATQMRKLTSNLRIGFGAFVD 158 (690)
T ss_dssp EEEEEECSGGGHHH------------HHHTTTTTHHHHHHHHHHCSCEEEEEEEECC
T ss_pred EEEEecCCcchHHH------------HHHHHHHHHHHHHHHHhhCcCceEEeEEeec
Confidence 67999999999542 3333333444443332234668999999975
No 44
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=89.57 E-value=0.28 Score=42.76 Aligned_cols=40 Identities=33% Similarity=0.487 Sum_probs=34.7
Q ss_pred HcCCcccccHHHHHHHHHHcCCCCCC--ChHHHHHHHHHhhc
Q 006975 583 DKGKLKEMTVQELKLYLMAHNLSTTG--RKETLISRILTHMG 622 (623)
Q Consensus 583 ~~g~l~kltv~~LK~~l~~~~~~~~g--kK~dLi~~i~~~l~ 622 (623)
....|-+++|..|+.||..+++++.| -|.|||+.|-.|.+
T Consensus 72 ~~~~l~~lkvkdL~~yL~~~~I~~~~c~EKedLv~lvl~~~~ 113 (120)
T 1y02_A 72 QREELMKMKVKDLRDYLSLHDISTEMCREKEELVLLVLGQQP 113 (120)
T ss_dssp CHHHHHTSCHHHHHHHHHHTTCCCTTCCSHHHHHHHHHHTCC
T ss_pred cHHHHhcccHHHHHHHHHhCCCCcccceeHHHHHHHHHhcCC
Confidence 33557889999999999999999988 79999999988753
No 45
>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus}
Probab=87.41 E-value=0.79 Score=37.96 Aligned_cols=37 Identities=24% Similarity=0.306 Sum_probs=32.8
Q ss_pred CcccccHHHHHHHHHHcCCCC--CCChHHHHHHHHHhhc
Q 006975 586 KLKEMTVQELKLYLMAHNLST--TGRKETLISRILTHMG 622 (623)
Q Consensus 586 ~l~kltv~~LK~~l~~~~~~~--~gkK~dLi~~i~~~l~ 622 (623)
.|++|.++-|+.|.+.++|.+ ...|++|++.|.+||.
T Consensus 23 df~kL~~~tLrrY~r~y~L~~~~~~sK~qLa~aV~kHF~ 61 (94)
T 2ld7_A 23 DLYQLQVNTLRRYKRHFKLPTRPGLNKAQLVEIVGCHFK 61 (94)
T ss_dssp CCSSSCHHHHHHHHHHTTCCCCSSCCHHHHHHHHHHHHT
T ss_pred CHHHCCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH
Confidence 468999999999999998875 4489999999999985
No 46
>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like membrane protein, mitochondrial ribosome, respir chain biogenesis; 2.10A {Saccharomyces cerevisiae}
Probab=87.05 E-value=0.72 Score=45.02 Aligned_cols=41 Identities=17% Similarity=0.357 Sum_probs=37.0
Q ss_pred HHHcCCcccccHHHHHHHHHHcCCCCCC-ChHHHHHHHHHhhc
Q 006975 581 LADKGKLKEMTVQELKLYLMAHNLSTTG-RKETLISRILTHMG 622 (623)
Q Consensus 581 ~~~~g~l~kltv~~LK~~l~~~~~~~~g-kK~dLi~~i~~~l~ 622 (623)
..+.| +..|++++|+..|..+|+.+.| ..++|.+.+.+||+
T Consensus 139 I~~EG-V~sLs~~ELr~AC~~RGm~~~gls~e~LR~~L~~WL~ 180 (249)
T 3skq_A 139 IDYEG-VESLSQEELYQACVSRGMKAYGVSKEDLVDNLKVWLE 180 (249)
T ss_dssp HHHHC-GGGSCHHHHHHHHHHTTCCCTTCCHHHHHHHHHHHHH
T ss_pred HHHhC-cccCCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 34567 9999999999999999999887 79999999999985
No 47
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=86.83 E-value=20 Score=38.46 Aligned_cols=45 Identities=13% Similarity=0.001 Sum_probs=30.5
Q ss_pred EEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEec
Q 006975 31 VVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNT 87 (623)
Q Consensus 31 iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt 87 (623)
+.||+|+|-||... ++...+.+..+++..--..++=.+|+..|--
T Consensus 114 Ly~LmDlS~SM~dd------------l~~lk~lg~~L~~~l~~~t~~~riGfgsFvD 158 (472)
T 3t3p_B 114 IYYLMDLSYSMKDD------------LWSIQNLGTKLATQMRKLTSNLRIGFGAFVD 158 (472)
T ss_dssp EEEEEECSGGGHHH------------HHHTTTHHHHHHHHHTTTCSCEEEEEEEECC
T ss_pred EEEEEccCcchHHH------------HHHHHHHHHHHHHHHHhcCcCcEEEEEEeec
Confidence 67999999999542 4444444455544443345688999999864
No 48
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=85.67 E-value=44 Score=38.18 Aligned_cols=71 Identities=17% Similarity=0.132 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCCCc---cC-------c----ch---hhHHHH----HHHHHHh
Q 006975 144 ENSLYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIK---GA-------A----KN---DMTRTT----MQRAKDA 202 (623)
Q Consensus 144 ~~~l~daL~~a~~~f~~~~~~~~~krI~l~Tn~d~P~~~~~---~~-------~----d~---~~~~~~----~~~a~dL 202 (623)
...+..||.+|..++..+.++. .=||++||..- |..+.. .. + ++ .....+ ...|.++
T Consensus 259 ~~~~G~Al~~A~~ll~~~~~~~-GGrI~~F~sg~-pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~ 336 (768)
T 1m2o_A 259 LRATGSALNIASLLLQGCYKNI-PARIILFASGP-GTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRV 336 (768)
T ss_dssp CCCHHHHHHHHHHHHHHHCTTS-CCEEEEEESSC-CCSSSSCCSCSBTTSCCCCHHHHHHTCCTTHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhccCCC-CcEEEEEeCCC-CCCCCccccccccccccccccccccchhhhcCchHHHHHHHHHHH
Confidence 4579999999999997543333 46799999872 221100 00 0 00 112212 2356788
Q ss_pred HhcCceEEEeeCCC
Q 006975 203 QDLGISIELLPLSP 216 (623)
Q Consensus 203 ~~~gI~i~l~~i~~ 216 (623)
...||.|++|.++.
T Consensus 337 ~~~gi~VDlF~~~~ 350 (768)
T 1m2o_A 337 AANGHTVDIFAGCY 350 (768)
T ss_dssp HHHTCEEEEEEECS
T ss_pred HHCCeEEEEEEccC
Confidence 88999999998864
No 49
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=85.61 E-value=40 Score=38.57 Aligned_cols=72 Identities=21% Similarity=0.153 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCCCCc-----c-----C----cc---hhhHHHH----HHHHHH
Q 006975 143 RENSLYNALWVAQGLLRKGSSKTADKRILLFTNEDDPFGSIK-----G-----A----AK---NDMTRTT----MQRAKD 201 (623)
Q Consensus 143 ~~~~l~daL~~a~~~f~~~~~~~~~krI~l~Tn~d~P~~~~~-----~-----~----~d---~~~~~~~----~~~a~d 201 (623)
....+..||.+|..++..+.++. .=||++||..- |..+.. + + .+ ...+..+ ...|.+
T Consensus 264 ~~~a~G~Al~~A~~lL~~~~~~~-GGrI~~F~sg~-pt~GpG~l~~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~ 341 (769)
T 2nut_A 264 PLRSSGVALSIAVGLLECTFPNT-GARIMMFIGGP-ATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANR 341 (769)
T ss_dssp CCCCHHHHHHHHHHHHHHHSCSS-CCEEEEEESSC-CCSSSSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHhhcccCC-CcEEEEEeCCC-CCCCCCCCcCcccccccccccccccchhhhccchHHHHHHHHHH
Confidence 34579999999999998543333 46799999852 211100 0 0 00 0112112 235678
Q ss_pred hHhcCceEEEeeCCC
Q 006975 202 AQDLGISIELLPLSP 216 (623)
Q Consensus 202 L~~~gI~i~l~~i~~ 216 (623)
+...||.|++|.++.
T Consensus 342 ~~~~gi~VDlF~~~~ 356 (769)
T 2nut_A 342 AATTGHVIDIYACAL 356 (769)
T ss_dssp HHHHTCEEEEEEECS
T ss_pred HHHCCeEEEEEeccC
Confidence 888999999998864
No 50
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.73 E-value=1.7 Score=31.10 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=33.3
Q ss_pred CCcccccHHHHHHHHHHcCCCCCCChHHHHHHHHHhh
Q 006975 585 GKLKEMTVQELKLYLMAHNLSTTGRKETLISRILTHM 621 (623)
Q Consensus 585 g~l~kltv~~LK~~l~~~~~~~~gkK~dLi~~i~~~l 621 (623)
+..+..+.++|.+-|...|-+..|...+||||++.|.
T Consensus 6 ~~ygaW~~~ELQaKLaE~GAPi~g~REElvdRLk~Y~ 42 (58)
T 2do5_A 6 SGYGAWAAQELQAKLAEIGAPIQGNREELVERLQSYT 42 (58)
T ss_dssp CCSCSSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHHH
T ss_pred CCcccccCHHHHHHHHHhCCcccccHHHHHHHHHHHh
Confidence 4456789999999999999999999999999999884
No 51
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=80.48 E-value=7.1 Score=41.62 Aligned_cols=45 Identities=16% Similarity=0.021 Sum_probs=32.0
Q ss_pred EEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEec
Q 006975 31 VVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNT 87 (623)
Q Consensus 31 iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt 87 (623)
+.||+|+|-||.. .++...+....+++..--..++=.+|+..|.-
T Consensus 125 LyyLmDlS~SM~d------------dl~~lk~lg~~L~~~l~~~t~~~riGfGsFvD 169 (454)
T 3vi3_B 125 LYYLMDLSYSMKD------------DLENVKSLGTDLMNEMRRITSDFRIGFGSFVE 169 (454)
T ss_dssp EEEEEECSGGGHH------------HHHHHTTHHHHHHHHHTTTCSSEEEEEEEECC
T ss_pred EEEEecCCcchhh------------HHHHHHHHHHHHHHHHHhcCCCeEEEEEEEec
Confidence 5799999999954 24555555566665544445788999999974
No 52
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=79.54 E-value=20 Score=38.57 Aligned_cols=46 Identities=15% Similarity=-0.020 Sum_probs=31.9
Q ss_pred EEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEec
Q 006975 30 YVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNT 87 (623)
Q Consensus 30 ~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt 87 (623)
=+.||+|+|-||.. .++...+.+..+++..--..++=.+|+..|--
T Consensus 134 DLyyLmDlS~SM~d------------dl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvD 179 (503)
T 3v4v_B 134 DLYYLMDLSYSMKD------------DLERVRQLGHALLVRLQEVTHSVRIGFGSFVD 179 (503)
T ss_dssp EEEEEEECSGGGHH------------HHHHHHHSSHHHHHHHTTTCSCEEEEEEEECC
T ss_pred eEEEEEecCcchhh------------HHHHHHHHHHHHHHHHHhhCcCcEEeeeeecc
Confidence 37899999999954 24555555555555544445788999999954
No 53
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=79.35 E-value=3.2 Score=47.95 Aligned_cols=164 Identities=12% Similarity=0.125 Sum_probs=83.2
Q ss_pred ceEEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEecCCCCCC-----CC------C
Q 006975 28 KEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNL-----QD------L 96 (623)
Q Consensus 28 ke~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt~~t~n~-----~~------~ 96 (623)
.=+.+|+||+|.++.+. .-+..+.+.+...+...--..++-.||+|.|++.-.=.. .+ -
T Consensus 187 pp~yvFvIDvs~~av~~----------g~l~~~~~si~~~L~~Lp~~~~~~~VGlITfd~~V~~~~l~~~~~g~k~~~~q 256 (810)
T 1pcx_A 187 PATYCFLIDVSQSSIKS----------GLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQ 256 (810)
T ss_dssp CCEEEEEEECSHHHHHH----------THHHHHHHHHHHHTTTSCCTTSCCEEEEEEESSSEEEEECCCGGGC-------
T ss_pred CcEEEEEEECChHHHhh----------hHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCccccCccccccc
Confidence 34689999999875321 124455555555553321122468999999988542100 00 1
Q ss_pred CcEEEecccccccCCCCC-----------hHHHHHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHHHHHhcCCCCC
Q 006975 97 NAVFVFNVAEREQLDRPT-----------ARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRKGSSKT 165 (623)
Q Consensus 97 ~~i~~l~~~~~~~l~~p~-----------~~~ik~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~~~f~~~~~~~ 165 (623)
+...++ .+++.|- .+.-..|.++++.... .+.. .......+..||.+|..++...
T Consensus 257 ~~mlvv-----~dl~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~----~~~~-~~~~~~a~G~AL~~A~~lL~~~---- 322 (810)
T 1pcx_A 257 INMMDI-----ADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQ----IFQS-NLITNFALGPALKSAYHLIGGV---- 322 (810)
T ss_dssp CEEECC-----CCTTCC-----TTTSEETTTTHHHHHHHHHHHHH----HTTT-CCCCCCCHHHHHHHHHHHHTTT----
T ss_pred hhhccc-----cccccccCCCcccccccHHHHHHHHHHHHHhhhh----hccC-CCCCCccHHHHHHHHHHHHHhc----
Confidence 223333 3333220 0111223334433222 2221 1234567999999999999642
Q ss_pred CCcEEEEEeCCCCCCCCC--cc-------Ccchh---hHHH----HHHHHHHhHhcCceEEEeeCCC
Q 006975 166 ADKRILLFTNEDDPFGSI--KG-------AAKND---MTRT----TMQRAKDAQDLGISIELLPLSP 216 (623)
Q Consensus 166 ~~krI~l~Tn~d~P~~~~--~~-------~~d~~---~~~~----~~~~a~dL~~~gI~i~l~~i~~ 216 (623)
.=||++||..---.+.. .. +++++ .... =...|.++...||.|++|.++.
T Consensus 323 -GGrI~~F~sg~pt~GpG~l~~r~~~~~~~~~ke~~~l~~~a~~fY~~la~~~~~~gi~VDlF~~s~ 388 (810)
T 1pcx_A 323 -GGKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASE 388 (810)
T ss_dssp -CEEEEEEESSCCCSSTTCCCC--------------------CCHHHHHHHHHHHTTEEEEEEEEES
T ss_pred -CCEEEEEecCCCCCCCCcccccccccccCcccchhhhcccchHHHHHHHHHHHHCCeEEEEEEccC
Confidence 35999999863111100 00 00011 0111 1235667888999999998764
No 54
>2w51_A Protein arMet; MANF, CDNF, saposin, secreted, ER stress, phosphoprotein, neurotrophic factor, sialic acid, glycoprotein, growth factor, hormone; 2.80A {Homo sapiens} PDB: 2kvd_A 2rqy_A 2kve_A
Probab=77.80 E-value=0.4 Score=43.08 Aligned_cols=39 Identities=31% Similarity=0.348 Sum_probs=29.5
Q ss_pred HcCCcccccHHHHHHHHHHcCCCCCC--ChHHHHHHHHHhh
Q 006975 583 DKGKLKEMTVQELKLYLMAHNLSTTG--RKETLISRILTHM 621 (623)
Q Consensus 583 ~~g~l~kltv~~LK~~l~~~~~~~~g--kK~dLi~~i~~~l 621 (623)
..-.|+||.|.|||.+|..+|+...| -|+|.|.||.+..
T Consensus 104 ~~~Dl~KlrVkeLK~IL~d~g~~C~GC~EK~DfV~ri~el~ 144 (158)
T 2w51_A 104 STVDLKKLRVKELKKILDDWGETCKGCAEKSDYIRKINELM 144 (158)
T ss_dssp CCSSCCTTHHHHHHHHTTCCCTTCSSCHHHHTTC-------
T ss_pred ccCChhhccHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhc
Confidence 45678999999999999999999999 7999999998653
No 55
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=76.46 E-value=3 Score=48.88 Aligned_cols=163 Identities=12% Similarity=0.131 Sum_probs=85.5
Q ss_pred eEEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEecCCCCCC-----C------CCC
Q 006975 29 EYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKNL-----Q------DLN 97 (623)
Q Consensus 29 e~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt~~t~n~-----~------~~~ 97 (623)
=+.+|+||+|.+..+. .-+..+.+++...+...--..++-+||+|.|++.-.=.. . .-+
T Consensus 304 pvyvFvIDvS~~av~~----------g~l~~l~~sI~~~L~~LP~~~~~~~VGlITFds~Vh~y~l~~~~~g~k~~~~q~ 373 (926)
T 1m2v_B 304 ATYCFLIDVSQSSIKS----------GLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQI 373 (926)
T ss_dssp CBEEEEEECSHHHHHS----------CHHHHHHHHHHHTTTTSCCTTSCCEECEEEESSSEEEEECCCC---------CC
T ss_pred cEEEEEEECCHHHHhh----------hHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCCcccCCcccccch
Confidence 4579999999864321 124555555555443221122368999999988542110 0 013
Q ss_pred cEEEecccccccCCCCC-----------hHHHHHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHHHHHhcCCCCCC
Q 006975 98 AVFVFNVAEREQLDRPT-----------ARFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRKGSSKTA 166 (623)
Q Consensus 98 ~i~~l~~~~~~~l~~p~-----------~~~ik~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~~~f~~~~~~~~ 166 (623)
...++ .+++.+- .+.-..|.++++.... .+.. .......+..||-+|..++...
T Consensus 374 qmlvv-----sdl~d~f~P~~~~~Lv~l~e~~~~I~~lLe~L~~----~~~~-~~~~~~~~G~AL~aA~~lL~~~----- 438 (926)
T 1m2v_B 374 NMMDI-----ADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQ----IFQS-NLITNFALGPALKSAYHLIGGV----- 438 (926)
T ss_dssp EEEEE-----CCCSSCCCSCSSSSSEETTTTHHHHHHHHHHHHH----HTSS-CCCCCCCHHHHHHHHHHHHTTT-----
T ss_pred hhccc-----cccccccCCCcccccccHHHHHHHHHHHHHhhhh----hhcC-CCCCCccHHHHHHHHHHHHHhh-----
Confidence 44444 4443220 1112233444443322 2221 1234678999999999999642
Q ss_pred CcEEEEEeCCCCCCCC------Ccc---CcchhhH---H----HHHHHHHHhHhcCceEEEeeCCC
Q 006975 167 DKRILLFTNEDDPFGS------IKG---AAKNDMT---R----TTMQRAKDAQDLGISIELLPLSP 216 (623)
Q Consensus 167 ~krI~l~Tn~d~P~~~------~~~---~~d~~~~---~----~~~~~a~dL~~~gI~i~l~~i~~ 216 (623)
.=||++|+..---.+. ++. +++++.. . -=...|.++...||.|++|.++.
T Consensus 439 GGrI~~F~sg~Pt~GpG~l~~re~~~~~~~~ke~~~ll~~a~~FYk~LA~~~~~~gisVDlF~~s~ 504 (926)
T 1m2v_B 439 GGKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASE 504 (926)
T ss_dssp CEEEEEEESSCCCSSTTCCCCCCC----CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEES
T ss_pred CCEEEEEecCCCCCCCCcccccccccccCcccchhhhccchHHHHHHHHHHHHHcCeEEEEEEccC
Confidence 3489999985311110 000 0111110 0 01345778888999999998764
No 56
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=73.02 E-value=56 Score=37.34 Aligned_cols=164 Identities=9% Similarity=0.100 Sum_probs=86.7
Q ss_pred eEEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhcc-----CCCeEEEEEEecCCCC----CCCCCCcE
Q 006975 29 EYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINR-----LYDEVAICFFNTRKKK----NLQDLNAV 99 (623)
Q Consensus 29 e~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~-----~~D~vgivl~gt~~t~----n~~~~~~i 99 (623)
=+.+|+||+|..-.+ ...+..+.+.+...+.. +-.. ++-.||+|.|++.-.= ....-+..
T Consensus 174 p~y~FvIDvs~~av~----------sg~l~~~~~si~~~L~~-lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~~~q~ 242 (766)
T 3eh2_A 174 PAFIFMIDVSYNAIR----------TGLVRLLCEELKSLLDF-LPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQM 242 (766)
T ss_dssp CEEEEEEECSHHHHH----------TTHHHHHHHHHHHHGGG-CCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEE
T ss_pred CEEEEEEECchhhcc----------chHHHHHHHHHHHHHHh-CCcccccCCccceEEEEEeCCEEEEEECCCCCCCceE
Confidence 477999999864211 12356666666666653 2211 2368999999986421 11223556
Q ss_pred EEecccccccCCCC----------Ch-HHHHHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCc
Q 006975 100 FVFNVAEREQLDRP----------TA-RFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRKGSSKTADK 168 (623)
Q Consensus 100 ~~l~~~~~~~l~~p----------~~-~~ik~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~~~f~~~~~~~~~k 168 (623)
+++ .+++.+ +. +.-..|.++++.... .+...+ ....-+.-||.+|...+... ...=
T Consensus 243 ~vv-----~dl~d~f~P~~~~~lv~l~e~~~~i~~lL~~L~~----~~~~~~-~~~t~~g~al~aa~~~l~~~---~~GG 309 (766)
T 3eh2_A 243 MVV-----SDVADMFVPLLDGFLVNVNESRAVITSLLDQIPE----MFADTR-ETETVFVPVIQAGMEALKAA---ECAG 309 (766)
T ss_dssp EEE-----CCTTTCCCCCCTTSSBCTTTTHHHHHHHHHHHHH----HHTTCC-CCCCCSHHHHHHHHHHHHHT---TCCE
T ss_pred EEe-----cChhhhccccccceeEeHHHHHHHHHHHHHhhhh----hccCCC-CCcchHHHHHHHHHHHhccC---CCCc
Confidence 666 444322 11 112234444443322 222222 23456888999998888532 1356
Q ss_pred EEEEEeCCC----CCCCC---Cc---cCcchh--hH----HHHHHHHHHhHhcCceEEEeeCCC
Q 006975 169 RILLFTNED----DPFGS---IK---GAAKND--MT----RTTMQRAKDAQDLGISIELLPLSP 216 (623)
Q Consensus 169 rI~l~Tn~d----~P~~~---~~---~~~d~~--~~----~~~~~~a~dL~~~gI~i~l~~i~~ 216 (623)
||++|+..- .|-.- ++ -+++++ .+ .-=...|.++...||.|++|.++.
T Consensus 310 kI~~F~s~lP~t~GpG~l~~r~~~~~~~sdke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~ 373 (766)
T 3eh2_A 310 KLFLFHTSLPIAEAPGKLKNRDDRKLINTDKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPN 373 (766)
T ss_dssp EEEEEECSCCCSSSTTCCCCCCCGGGTTSTTGGGGTSCSSTHHHHHHHHHHHHTEEEEEEECCS
T ss_pred EEEEEecCCCCcCCCcccccccccccCCCcchhhhccchHHHHHHHHHHHHhCCeEEEEEEecC
Confidence 888888762 22100 00 000110 00 001235778889999999998864
No 57
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=71.83 E-value=3.1 Score=37.94 Aligned_cols=37 Identities=19% Similarity=0.362 Sum_probs=31.8
Q ss_pred CCccc-ccHHHHHHHHHHcCCCCCCChHHHHHHHHHhh
Q 006975 585 GKLKE-MTVQELKLYLMAHNLSTTGRKETLISRILTHM 621 (623)
Q Consensus 585 g~l~k-ltv~~LK~~l~~~~~~~~gkK~dLi~~i~~~l 621 (623)
+.|.+ |++++||+.|+..++.+.|.+++|++|+...+
T Consensus 36 D~L~~~ls~~eLk~lL~~N~q~~~g~~~~ll~r~ADgm 73 (160)
T 2riq_A 36 DELKKVCSTNDLKELLIFNKQQVPSGESAILDRVADGM 73 (160)
T ss_dssp HHHHHHCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHH
T ss_pred HHHHhhCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 34544 99999999999999988899999999998654
No 58
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=70.43 E-value=2.2 Score=43.11 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=38.2
Q ss_pred HHHcCCcccccHHHHHHHHHHcCCCCCCChHHHHHHHHHhhc
Q 006975 581 LADKGKLKEMTVQELKLYLMAHNLSTTGRKETLISRILTHMG 622 (623)
Q Consensus 581 ~~~~g~l~kltv~~LK~~l~~~~~~~~gkK~dLi~~i~~~l~ 622 (623)
..-+|.++.||+++|...|+..|+.+.|.|..|..|+.+|++
T Consensus 20 ~~~~~~~~~m~~~~l~~~l~~~~l~~~g~~~~l~~~l~~~~~ 61 (299)
T 1zbh_A 20 AITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYK 61 (299)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHH
T ss_pred HHhhchhhhccHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Confidence 346778899999999999999999999999999999999874
No 59
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=69.95 E-value=5.3 Score=45.13 Aligned_cols=46 Identities=15% Similarity=0.051 Sum_probs=27.5
Q ss_pred EEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEec
Q 006975 30 YVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNT 87 (623)
Q Consensus 30 ~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt 87 (623)
=+.||+|+|-||.... +...+.+..|++..--...+=.+|+..|.-
T Consensus 106 Dly~LmD~S~SM~ddi------------~~lk~l~~~l~~~l~~~t~~~r~GfgsFvD 151 (687)
T 3k6s_B 106 DLYYLMDLSYSMLDDL------------RNVKKLGGDLLRALNEITESGRIGFGSFVD 151 (687)
T ss_dssp EEEEEEECSSTTHHHH------------HTTTTCCTTHHHHHHSSCCSCEEEEEEECC
T ss_pred eEEEEEcCCcchHHHH------------HHHHHHHHHHHHHHHhhCcCcEEeeEEeec
Confidence 3789999999996532 222222222222222234678999999975
No 60
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=61.57 E-value=1.9e+02 Score=32.99 Aligned_cols=165 Identities=10% Similarity=0.091 Sum_probs=83.5
Q ss_pred eEEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhc----cCCCeEEEEEEecCCCC----CCCCCCcEE
Q 006975 29 EYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIIN----RLYDEVAICFFNTRKKK----NLQDLNAVF 100 (623)
Q Consensus 29 e~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~----~~~D~vgivl~gt~~t~----n~~~~~~i~ 100 (623)
=+.+|+||+|..=.+. -.+..+.+.+...+...--. .+.-.||+|.|++.-.= ....-+...
T Consensus 178 p~y~FvIDvs~~av~s----------g~l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~q~q~~ 247 (770)
T 3efo_B 178 PAFIFMIDVSYSNIKN----------GLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMM 247 (770)
T ss_dssp CEEEEEEECSHHHHHT----------THHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEE
T ss_pred cEEEEEEEcchhhccc----------hHHHHHHHHHHHHHHhCCccccccCccceEEEEEeCCEEEEEeCCCcccCceEE
Confidence 4789999998642211 13566666666665432111 12359999999986421 111123444
Q ss_pred EecccccccCCCC----------Ch-HHHHHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCcE
Q 006975 101 VFNVAEREQLDRP----------TA-RFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRKGSSKTADKR 169 (623)
Q Consensus 101 ~l~~~~~~~l~~p----------~~-~~ik~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~~~f~~~~~~~~~kr 169 (623)
++ .+++.+ +. +.-..|.++++..... +... .....-+.-||.+|...+... . ..=|
T Consensus 248 vv-----~d~~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~----~~~~-~~~~t~~g~al~aa~~~l~~~--~-~GGk 314 (770)
T 3efo_B 248 VV-----TDVGEVFVPLLDGFLVNYQESQSVIHNLLDQIPDM----FADS-NENETVFAPVIQAGMEALKAA--D-CPGK 314 (770)
T ss_dssp EE-----CCTTSCCCCCSSSSSBCTTTTHHHHHHHHHHHHHH----HHTC-CCCCCCCHHHHHHHHHHHHHH--T-CCEE
T ss_pred Ee-----cccccccCCCccceeeeHHHHHHHHHHHHHhhHhh----ccCC-CCCcchHHHHHHHHHHHhccC--C-CCcE
Confidence 44 333321 11 1122344444433221 2211 123455788898888888531 1 1348
Q ss_pred EEEEeCCC----CCCCC---Cc---cCcchh--hHH----HHHHHHHHhHhcCceEEEeeCCC
Q 006975 170 ILLFTNED----DPFGS---IK---GAAKND--MTR----TTMQRAKDAQDLGISIELLPLSP 216 (623)
Q Consensus 170 I~l~Tn~d----~P~~~---~~---~~~d~~--~~~----~~~~~a~dL~~~gI~i~l~~i~~ 216 (623)
|++|+..- .|-.- ++ -+++++ ... -=...|.++...||.|++|.++.
T Consensus 315 I~~F~s~lP~t~GpG~l~~r~~~~~~~t~ke~~~~~~a~~fY~~lA~~~~~~~i~VDlF~~s~ 377 (770)
T 3efo_B 315 LFIFHSSLPTAEAPGKLKNRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPS 377 (770)
T ss_dssp EEEEECSCCCSSSTTCCCCCCCCCCSSCSCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEECCS
T ss_pred EEEEecCCCCcCCCccccccccccccCCcchhhhhcchHHHHHHHHHHHHHcCeEEEEEEecC
Confidence 99998762 22100 00 000111 000 01235678899999999998864
No 61
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=57.36 E-value=44 Score=38.10 Aligned_cols=159 Identities=14% Similarity=0.194 Sum_probs=84.2
Q ss_pred ceEEEEEEECCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEecCCCCC----CCCCCcEEEec
Q 006975 28 KEYVVYLVDASPKMFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTRKKKN----LQDLNAVFVFN 103 (623)
Q Consensus 28 ke~iiflIDvs~sM~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt~~t~n----~~~~~~i~~l~ 103 (623)
.=+.+|+||+|..=.+ .-.+..+.+.+...+. .+-..+...||+|.|++.-.=. ...-+...++
T Consensus 160 pp~yvFvIDvs~~a~~----------~g~l~~~~~sl~~~L~-~lp~~~~~~VG~ITfd~~vh~y~l~~~~~~~qmlvv- 227 (751)
T 3eh1_A 160 PAVYLFVLDVSHNAVE----------AGYLTILCQSLLENLD-KLPGDSRTRIGFMTFDSTIHFYNLQEGLSQPQMLIV- 227 (751)
T ss_dssp CCEEEEEEECSHHHHH----------HTHHHHHHHHHHHHTT-TSSCCTTCEEEEEEESSSEEEEECCTTCSSCEEEEE-
T ss_pred CcEEEEEEEccHhhhh----------hhHHHHHHHHHHHHHH-hcCCCcCcEEEEEEeCCEEEEEECCCCcccceeecc-
Confidence 3467999999864211 1124444455544442 2222334589999999854211 1112345555
Q ss_pred ccccccCCC---CCh--------HHHHHHHHHHHhHhhhhcccccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCcEEEE
Q 006975 104 VAEREQLDR---PTA--------RFIKEFDHIEESFEKEIGSQYGIVSGSRENSLYNALWVAQGLLRKGSSKTADKRILL 172 (623)
Q Consensus 104 ~~~~~~l~~---p~~--------~~ik~L~~l~~~~~~~~~~~~~~~~~~~~~~l~daL~~a~~~f~~~~~~~~~krI~l 172 (623)
.+++. |.. +.-..|+++++. +...+.. .......+..||.+|..++.. ..=||++
T Consensus 228 ----~dl~d~f~P~~~~~lv~l~e~~~~i~~lL~~----Lp~~~~~-~~~~~~~~G~AL~aA~~ll~~-----~GGrI~~ 293 (751)
T 3eh1_A 228 ----SDIDDVFLPTPDSLLVNLYESKELIKDLLNA----LPNMFTN-TRETHSALGPALQAAFKLMSP-----TGGRVSV 293 (751)
T ss_dssp ----SCTTCTTSCCGGGTSEETTTTHHHHHHHHHH----GGGTSTT-CSCCCCCHHHHHHHHHHHHTT-----TCEEEEE
T ss_pred ----ccccccCCCChhhhcccHHHHHHHHHHHHHh----hhHhhcC-CCCCccchHHHHHHHHHHhhc-----CCCEEEE
Confidence 44443 221 112234444443 2222322 123356799999999999853 2458999
Q ss_pred EeCCCCCCCCC-------cc---Cc---------chhhHHHHHHHHHHhHhcCceEEEeeCCC
Q 006975 173 FTNEDDPFGSI-------KG---AA---------KNDMTRTTMQRAKDAQDLGISIELLPLSP 216 (623)
Q Consensus 173 ~Tn~d~P~~~~-------~~---~~---------d~~~~~~~~~~a~dL~~~gI~i~l~~i~~ 216 (623)
|+..- |..+. ++ ++ ...-. ...|.++...||.+++|.++.
T Consensus 294 F~sg~-pt~GpG~l~~r~~~~~~~~~ke~~~~~~a~~fY---~~la~~~~~~~i~VDlF~~s~ 352 (751)
T 3eh1_A 294 FQTQL-PSLGAGLLQSREDPNQRSSTKVVQHLGPATDFY---KKLALDCSGQQTAVDLFLLSS 352 (751)
T ss_dssp EECSC-CCSSTTCCCCCCCSCGGGGSSSCTTCSCSCSHH---HHHHHHHHHTTEEEEEEECCS
T ss_pred EecCC-CCCCCCccccccccccCCCchhhhhhcchHHHH---HHHHHHHHhcCceEEEEEccC
Confidence 98742 11110 00 00 00111 235678889999999998864
No 62
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=45.48 E-value=4.4 Score=41.91 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHcCCcccccHHHHHHHHHHcCCCCCCChHHHHHHHHHhhc
Q 006975 581 LADKGKLKEMTVQELKLYLMAHNLSTTGRKETLISRILTHMG 622 (623)
Q Consensus 581 ~~~~g~l~kltv~~LK~~l~~~~~~~~gkK~dLi~~i~~~l~ 622 (623)
...+|.++.+|+.+|+..|...++.+.|.|..|-.++.+|+.
T Consensus 70 ~~~~~~i~~~~~~~l~~~l~~~~l~~~G~~~vl~~~l~~~y~ 111 (349)
T 1zbu_A 70 AITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYK 111 (349)
T ss_dssp ------------------------------------------
T ss_pred HHhhcccccCCHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh
Confidence 447889999999999999999999999999999999988864
No 63
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=35.65 E-value=51 Score=31.99 Aligned_cols=41 Identities=20% Similarity=0.375 Sum_probs=30.3
Q ss_pred CCCcEEEEEeCCCCCCCCCccCcchhhHHHHHHHHHHhHhcCceEEEeeCCC
Q 006975 165 TADKRILLFTNEDDPFGSIKGAAKNDMTRTTMQRAKDAQDLGISIELLPLSP 216 (623)
Q Consensus 165 ~~~krI~l~Tn~d~P~~~~~~~~d~~~~~~~~~~a~dL~~~gI~i~l~~i~~ 216 (623)
-..|.|+|+||..+-++. +. ...|+.+.+.||.|..+++..
T Consensus 8 ~~~k~iillTDG~~~~g~-----~p------~~aa~~a~~~gi~v~tIGig~ 48 (242)
T 3rag_A 8 ATIRQILVITDGCSNIGP-----DP------VEAARRAHRHGIVVNVIGIVG 48 (242)
T ss_dssp CCEEEEEEEESSCCCSSS-----CH------HHHHHHHHHTTCEEEEEEECC
T ss_pred CCccEEEEEccCCCCCCC-----CH------HHHHHHHHHCCCEEEEEEecC
Confidence 347899999999877665 22 223456788999999999954
No 64
>3q4o_A Uncharacterized protein MJ0754; ferritin-like protein, four-helix bundle, metal binding, DIN center, unknown function; HET: B3P; 1.34A {Methanocaldococcus jannaschii} PDB: 3q4q_A* 3q4r_A* 3q4n_A
Probab=32.31 E-value=67 Score=30.03 Aligned_cols=40 Identities=18% Similarity=0.358 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhcCCC----CCCCCCCCChhHHHHHHHHHHhh
Q 006975 467 DDEVKKAAALMKRIDLK----DFSVCQFANPSLQRHYAVLQALA 506 (623)
Q Consensus 467 ~eq~~~a~~lI~~l~l~----~y~p~~~~NP~lq~~y~~lea~A 506 (623)
...+++++.|+++..++ +..+..|.||.||.+|..|-+..
T Consensus 66 q~H~dal~~Ll~rYgl~~P~~~~~~G~f~~p~lq~LY~~L~e~G 109 (196)
T 3q4o_A 66 QTHMDAVKYLLEKYNIPDPVKNDSIGVFSNPKFEELYKKLVEKG 109 (196)
T ss_dssp HHHHHHHHHHHHHTTCCCSCSCCSTTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCeeccHhHHHHHHHHHHHh
Confidence 34568999999999996 24568899999999999886653
No 65
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=24.83 E-value=73 Score=24.56 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=42.5
Q ss_pred hccchHHHHHHHHcCCcccccHHHHHHHHHH-c-CCCCCCChHHHHHHHHHhhc
Q 006975 571 KECANYDWADLADKGKLKEMTVQELKLYLMA-H-NLSTTGRKETLISRILTHMG 622 (623)
Q Consensus 571 ~~~~~~~~~~~~~~g~l~kltv~~LK~~l~~-~-~~~~~gkK~dLi~~i~~~l~ 622 (623)
++.-...+++..+.--|...|.-+.+.-|.. . |...+.||+-+=+.|..+|.
T Consensus 14 d~ei~~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg~dLs~kK~~I~~~I~~~L~ 67 (70)
T 1q1v_A 14 DEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLTERKDFIKTTVKELIS 67 (70)
T ss_dssp HHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHh
Confidence 3344567888889999999999999998855 5 88888899998888888774
No 66
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=24.66 E-value=38 Score=20.72 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=13.4
Q ss_pred cccHHHHHHHHHHcCC.
Q 006975 589 EMTVQELKLYLMAHNL. 604 (623)
Q Consensus 589 kltv~~LK~~l~~~~~. 604 (623)
.+|..|.|+|.|.+|+
T Consensus 10 ~M~~~~Vk~fvR~~gi. 25 (25)
T 3ewt_E 10 VMTLSQVKGFVRKNGVx 26 (26)
T ss_pred HHhHHHHHHHHHHcCC.
Confidence 3788999999998875
No 67
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=20.86 E-value=1.4e+02 Score=30.41 Aligned_cols=58 Identities=2% Similarity=0.217 Sum_probs=39.3
Q ss_pred hhhhhcccceEEEEEEECCcc---ccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEecC
Q 006975 20 FYQEHEATKEYVVYLVDASPK---MFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTR 88 (623)
Q Consensus 20 ~~~~~~~~ke~iiflIDvs~s---M~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt~ 88 (623)
.|..|..+-.++|||+|+|.- +.+. .....|+.+++....++..+-+. .+.|||+|..
T Consensus 177 ~w~~yy~~a~~iIfV~diS~ydq~l~e~-------~~~nr~~es~~~~~~i~~~~~~~----~~piiLv~NK 237 (340)
T 4fid_A 177 XWVSFFSDVDCAIFVTSLAEYDMKLYED-------GNTSRLTESIAVFKDIMTNEFLK----GAVKLIFLNK 237 (340)
T ss_dssp HHHTTSCSCSEEEEEEEGGGTTCBCC---------CCSBHHHHHHHHHHHHHHCGGGT----TSEEEEEEEC
T ss_pred cHHHHhccCCEEEEEEECCccccccccc-------cccchHHHHHHHHHHHhhhhccC----CCeEEEEEEC
Confidence 377788788999999999841 2111 23467888888777777665443 3567788764
No 68
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=20.29 E-value=1.4e+02 Score=31.17 Aligned_cols=59 Identities=7% Similarity=0.204 Sum_probs=38.8
Q ss_pred hhhhhcccceEEEEEEECCcc--ccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccCCCeEEEEEEecC
Q 006975 20 FYQEHEATKEYVVYLVDASPK--MFSTTCPAEDQTDETHFHIAVSCIAQSLKTQIINRLYDEVAICFFNTR 88 (623)
Q Consensus 20 ~~~~~~~~ke~iiflIDvs~s--M~~~~~~~~~~~~~s~~~~al~~i~~~~~~kIi~~~~D~vgivl~gt~ 88 (623)
.|..|..+-+++|||+|++.- +... ......|+.++.....++..+.+ ..+-|||+|+.
T Consensus 233 ~w~~yf~~a~~iIfV~dis~ydq~l~e------d~~~ns~~e~~~~~~~i~~~~~~----~~~piiLvgNK 293 (402)
T 1azs_C 233 KWIQCFNDVTAIIFVVASSSYNMVIRE------DNQTNRLQEALNLFKSIWNNRWL----RTISVILFLNK 293 (402)
T ss_dssp GGGGGTTTCCEEEEEEETTGGGCBCTT------TSCSBHHHHHHHHHHHHHTCTTC----SSCCEEEEEEC
T ss_pred hhHhhccCCCEEEEEEECccccccccc------ccccchHHHHHHHHHHHHhcccC----CCCeEEEEEEC
Confidence 477777788999999999972 2111 12356788888776666554322 23567888774
Done!