Your job contains 1 sequence.
>006976
MEEEIKAEFQKNGFNFVDEGEVLKKCLTFCINYNLKPSDLVSSWEVYYLNRQLDESTVKD
DEMDGFMLHLQNEQKEAIIKEEPSLHIYSSKDVDMILNDEDENIAEDILGTPPDNLKLYS
DALDSTYKANANGYSSDKPSKLVTPFGRRTEKLVVKFNINNLPNTENGCIEHDDENTEDD
IIKRIKTGKKCSLMVHGSGPEPGCRFMYDRTEDRFNALENRIRKHANALVSSGLYEEPTD
PTVASQRTLFAVGMICCDGDGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVV
GIEGSNPSGHCLIASKLVDQIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEEISMIIA
AGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLE
ILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLPQPPFDIQPPDIIHQITSLTNPGTFEA
NQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRMEIYSLDISLMGPAFFFYPLYPPAEGI
PLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEG
SGTFAEIYYHGSPEMMNASIISI
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 006976
(623 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2008580 - symbol:POLA2 "DNA polymerase alpha 2... 1933 1.1e-199 1
ZFIN|ZDB-GENE-030131-778 - symbol:pola2 "polymerase (DNA ... 409 4.1e-52 3
UNIPROTKB|E2R2N0 - symbol:POLA2 "Uncharacterized protein"... 299 3.4e-41 2
UNIPROTKB|B4DNB4 - symbol:POLA2 "cDNA FLJ60312, highly si... 249 4.4e-37 2
UNIPROTKB|F1MXS4 - symbol:POLA2 "DNA polymerase alpha sub... 256 4.7e-37 2
UNIPROTKB|F1MLC0 - symbol:POLA2 "DNA polymerase alpha sub... 256 4.9e-37 2
UNIPROTKB|G3V8U6 - symbol:Pola2 "Polymerase (DNA directed... 250 1.6e-35 2
RGD|621817 - symbol:Pola2 "polymerase (DNA directed), alp... 250 2.0e-35 2
MGI|MGI:99690 - symbol:Pola2 "polymerase (DNA directed), ... 243 6.9e-35 3
UNIPROTKB|Q14181 - symbol:POLA2 "DNA polymerase alpha sub... 244 2.0e-34 2
UNIPROTKB|F6XEE7 - symbol:POLA2 "Uncharacterized protein"... 239 2.8e-34 2
POMBASE|SPCC553.09c - symbol:spb70 "DNA polymerase alpha ... 389 4.1e-34 1
UNIPROTKB|Q58D13 - symbol:POLA2 "DNA polymerase alpha sub... 345 1.1e-28 1
SGD|S000000131 - symbol:POL12 "B subunit of DNA polymeras... 309 2.2e-28 3
ASPGD|ASPL0000002116 - symbol:AN10855 species:162425 "Eme... 338 1.0e-27 1
UNIPROTKB|F1RQV4 - symbol:POLA2 "Uncharacterized protein"... 246 1.5e-23 2
UNIPROTKB|H0YDR7 - symbol:POLA2 "DNA polymerase alpha sub... 246 4.9e-20 1
CGD|CAL0004305 - symbol:orf19.2796 species:5476 "Candida ... 227 8.2e-18 3
FB|FBgn0005696 - symbol:DNApol-alpha73 "DNA polymerase al... 200 7.2e-16 2
DICTYBASE|DDB_G0282731 - symbol:polA2 "DNA polymerase alp... 157 1.8e-12 3
WB|WBGene00001002 - symbol:div-1 species:6239 "Caenorhabd... 141 4.0e-06 1
GENEDB_PFALCIPARUM|PF14_0602 - symbol:PF14_0602 "DNA poly... 135 1.6e-05 1
UNIPROTKB|Q8IKK3 - symbol:PF14_0602 "DNA polymerase alpha... 135 1.6e-05 1
>TAIR|locus:2008580 [details] [associations]
symbol:POLA2 "DNA polymerase alpha 2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006260
"DNA replication" evidence=IEA;RCA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006270 "DNA replication initiation"
evidence=RCA] [GO:0006275 "regulation of DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0008283 "cell proliferation" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010389
"regulation of G2/M transition of mitotic cell cycle" evidence=RCA]
[GO:0016458 "gene silencing" evidence=RCA] [GO:0034968 "histone
lysine methylation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0051726 "regulation of cell cycle"
evidence=RCA] InterPro:IPR007185 Pfam:PF04042 EMBL:CP002684
GO:GO:0005739 GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 KO:K02321
InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 IPI:IPI00519085 RefSeq:NP_176930.2
UniGene:At.35625 ProteinModelPortal:F4HTP2 SMR:F4HTP2 PRIDE:F4HTP2
EnsemblPlants:AT1G67630.1 GeneID:843086 KEGG:ath:AT1G67630
OMA:GCRFMYD Uniprot:F4HTP2
Length = 620
Score = 1933 (685.5 bits), Expect = 1.1e-199, P = 1.1e-199
Identities = 383/626 (61%), Positives = 479/626 (76%)
Query: 2 EEEIKAEFQKNGFNFVDEGEVLKKCLTFCINYNLKPSDLVSSWEVYYLNRQLDESTVKDD 61
+EEIK EF+++GF V+E E+LK+C+T CINY+LKPSDLVSSWE+Y+LNRQL + TVK D
Sbjct: 4 DEEIKNEFKRSGFILVEEDEILKRCVTLCINYSLKPSDLVSSWELYHLNRQLLDQTVKKD 63
Query: 62 EMDGFMLHLQNEQKEAIIK-EEPSLHIYSSKDVDMILNDEDENIAEDILGTPPD-NLKLY 119
+MDGF+LHLQNEQKE+I++ EE LH+YS++DVDM+L+ E+ E+I+ TP + + +L+
Sbjct: 64 DMDGFVLHLQNEQKESIMRVEEAGLHLYSNRDVDMLLDGVQED-TEEIVTTPTNKSQRLH 122
Query: 120 SDALDSTYKANANGYSSDKPSKLVTPFGRRTEKLVVKFNINNLP-NTENGCIEHDDENTE 178
D DS ++ GYS+ K VTPFG R EK VVKFN+ N+ + ENG +D EN+E
Sbjct: 123 PDPFDSISRSRDYGYSTGKSVGHVTPFGSRIEKFVVKFNVGNVAAHAENGN-NNDVENSE 181
Query: 179 DDIIKRIKTGKKCSLMVHGSGPEPGCRFMYDRTEDRFNALENRIRKHANALVSSGLYEEP 238
DDIIKR++T ++CSL V+GSGPEPGCRFMYDRTEDRF+ALE RI +HA+A +SGLYEE
Sbjct: 182 DDIIKRVQTSQRCSLKVNGSGPEPGCRFMYDRTEDRFSALEYRIVRHADAFAASGLYEEQ 241
Query: 239 TDPTVASQRTLFAVGMICCDGDGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQ 298
DP VASQR++FAVGMICCDG+GHLNDKS+LLQSS E + GQRV +DL +L +FS+FPGQ
Sbjct: 242 VDPAVASQRSIFAVGMICCDGEGHLNDKSILLQSSAERTSGQRVPVDLKRLDQFSIFPGQ 301
Query: 299 VVGIEGSNPSGHCLIASKLVDQIPLPVDAVVDVHPSMKQALDQEIHSTVVIS-RPEEISM 357
VVGIEG NPSGH L ASKL+D +PL + VD+ P+ +Q LDQE+ S + E+S
Sbjct: 302 VVGIEGQNPSGHYLTASKLLDSVPLTLTVDVDLPPAKRQILDQEVLVPAEESCQKSEVSF 361
Query: 358 IIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIF 417
IIA+GPFTT+DNL FEPL EL++YAKRK PQLL+LLGPFVDSEHP+IKKG D++F+EIF
Sbjct: 362 IIASGPFTTSDNLLFEPLNELLAYAKRKPPQLLVLLGPFVDSEHPEIKKGAVDATFNEIF 421
Query: 418 HLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLXXXXXXXXXXXXXXXXTSLTNPGT 477
+E+LR+LQDYVE+MGSEVR +LVPSIRDANHDF+ TSL+NPGT
Sbjct: 422 QVEVLRKLQDYVEFMGSEVRVVLVPSIRDANHDFIFPQPPFDIHIPDLEHQMTSLSNPGT 481
Query: 478 FEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRMEIYSLDISLMGXXXXXXXXXXXX 537
FEANQ+KV CCTVDVLKQLSGEEMS+ + G DRM L L+
Sbjct: 482 FEANQVKVSCCTVDVLKQLSGEEMSK-NPSGVPTDRMS--RLASHLL-RQRSFYPLYPPP 537
Query: 538 EGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAK 597
E +P D SLA +AL IS+IPDI++LPSDM+YF+K+LSLG E E+ KCVCVNPGRLAK
Sbjct: 538 ESLPYDSSLAPKALQISSIPDILLLPSDMRYFVKILSLG---EEEDAAKCVCVNPGRLAK 594
Query: 598 GEGSGTFAEIYYHGSPEMMNASIISI 623
GEG+GTF E+ Y G PE M+ASIISI
Sbjct: 595 GEGAGTFVELTYKGGPESMHASIISI 620
>ZFIN|ZDB-GENE-030131-778 [details] [associations]
symbol:pola2 "polymerase (DNA directed), alpha 2"
species:7955 "Danio rerio" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007185
Pfam:PF04042 ZFIN:ZDB-GENE-030131-778 GO:GO:0003677 GO:GO:0006260
GO:GO:0003887 InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 HOVERGEN:HBG055628 EMBL:BC065460 IPI:IPI00505805
UniGene:Dr.77094 STRING:Q6P0S9 PRIDE:Q6P0S9 InParanoid:Q6P0S9
ArrayExpress:Q6P0S9 Bgee:Q6P0S9 Uniprot:Q6P0S9
Length = 600
Score = 409 (149.0 bits), Expect = 4.1e-52, Sum P(3) = 4.1e-52
Identities = 98/299 (32%), Positives = 163/299 (54%)
Query: 205 RFMYDRTEDRFNALENRIRKHANALVSSGLYEEPTDPTVASQRTLFAVGMICCDGDGHLN 264
++M+ R D + L +I + L ++ EE ++ Q ++ +G +CCD +G LN
Sbjct: 207 KYMFQRLRDVRDVLTGKIEELGEELRTNFNIEEFAPVSLPVQDSITVLGQVCCDSNGKLN 266
Query: 265 DKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASKLVDQIPLP 324
+SVLL++ E GG++V +DL +L EFSLFPGQVV +EG NPSG L+A+KL + IPLP
Sbjct: 267 AQSVLLEAGQEQ-GGRQVPVDLSELKEFSLFPGQVVVMEGMNPSGEKLVATKLYEGIPLP 325
Query: 325 VDAVVDVHPSMKQALDQEIHSTVVISRPEEISMIIAAGPFTTTDNLYFEPLKELISYAKR 384
+V KQ +D+ + P + ++IA GP+T +++L ++PL +LI+ +
Sbjct: 326 FYCPSEV----KQEMDE-------VCEP--VMVMIACGPYTPSESLTYDPLLDLITIINK 372
Query: 385 KQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSI 444
+P + IL GPFVDS+H QI+K +F+ IF + + + + G+ + + VPS
Sbjct: 373 DRPDVCILFGPFVDSKHEQIEKNQVTETFETIFK-RCMDSIVEGTK--GTACKLVFVPSQ 429
Query: 445 RDANHDFVLXXXXXXXXXXXXXXXXTSLT-NPGTFEANQIKVGCCTVDVLKQLSGEEMS 502
RD +H ++ +L +P T + G + D+L + EE+S
Sbjct: 430 RDVHHHYIYPQPPFNLTISKEDTARVTLAPDPCTLLIGNVTFGLTSTDILFHMGAEEIS 488
Score = 133 (51.9 bits), Expect = 4.1e-52, Sum P(3) = 4.1e-52
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 538 EGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAK 597
E + +D+ Q+ +S PDI++ PS+++YFIK + +G CVCVNPGRL K
Sbjct: 517 EEVNMDYDKFQQFSQMSLTPDILLAPSELRYFIKDV-IG----------CVCVNPGRLTK 565
Query: 598 GEGSGTFAEIYYHGSPEMMNASIIS 622
G+ GT+ + +P ++ +S
Sbjct: 566 GQIGGTYGRLLIQPNPAVVEGKRVS 590
Score = 76 (31.8 bits), Expect = 4.1e-52, Sum P(3) = 4.1e-52
Identities = 28/115 (24%), Positives = 53/115 (46%)
Query: 3 EEIKAEFQKNGFNFVDEGEVLKKCLTFCINYNLKPSDLVSSWEVYYLNRQLDESTVKDDE 62
E+IK+E FN + + K L C + L ++V W + R+ T+++
Sbjct: 7 EDIKSELDT--FNIAFNNDTIDKMLEQCFCHRLTGEEIVFEWFAFSSTRKQLPLTLEN-- 62
Query: 63 MDGFMLHLQNEQKEAIIKEEPSLHIYSSKDVDMI-----LNDEDENIAEDILGTP 112
+D F + N++K+ + S I ++D++ I +E+EN+ D TP
Sbjct: 63 LDQFEQEVLNKKKKPKSTSKGS-QINKTRDINSIQELIRAEEEEENML-DSYSTP 115
>UNIPROTKB|E2R2N0 [details] [associations]
symbol:POLA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0000060 "protein
import into nucleus, translocation" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR007185 Pfam:PF04042
GO:GO:0005737 GO:GO:0003677 GO:GO:0006260 GO:GO:0000060
GO:GO:0003887 InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 GO:GO:0005658 Ensembl:ENSCAFT00000021706
Uniprot:E2R2N0
Length = 597
Score = 299 (110.3 bits), Expect = 3.4e-41, Sum P(2) = 3.4e-41
Identities = 79/258 (30%), Positives = 129/258 (50%)
Query: 353 EEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSS 412
E+ +++A GP+TT+D++ ++PL +LI+ R QP + IL GPF+D++H Q++ S
Sbjct: 334 EQNMVLVACGPYTTSDSITYDPLLDLIAIINRDQPDVCILFGPFLDAKHEQVENCLLTSP 393
Query: 413 FDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLXX--XXXXXXXXXXXXXXT 470
F++IF + LR + + GS + + VPS+RD + + V
Sbjct: 394 FEDIFK-QCLRTIIEGTRSSGSHL--VFVPSVRDVHCEPVYPQPPFSYSDLAREDRKRVH 450
Query: 471 SLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRMEIYSLDISLMGXXXXX 530
++ P N + G + D+L + EE+S S GTS DR+ S + +
Sbjct: 451 FVSEPCNLSINGVIFGLTSTDLLFHMGAEEISSPSASGTS-DRL---SRILKHILTQRSY 506
Query: 531 XXXXXXXEGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCV 590
E + +D+ + PDI I+PS++KYF+K + LG CVCV
Sbjct: 507 YPLYPPQEDMAIDYENFYIYAQLPITPDIFIIPSELKYFVKDV-LG----------CVCV 555
Query: 591 NPGRLAKGEGSGTFAEIY 608
NPGRL KG+ GTF ++
Sbjct: 556 NPGRLTKGQVGGTFGRLF 573
Score = 212 (79.7 bits), Expect = 3.4e-41, Sum P(2) = 3.4e-41
Identities = 47/118 (39%), Positives = 70/118 (59%)
Query: 207 MYDRTEDRFNALENRIRKHANALVSSGLYEEPTDPTVASQRTLFAVGMICCDGDGHLNDK 266
M+ + D + L +I + + L E T V +Q + +G I CD +G LN K
Sbjct: 205 MFQKLPDIRDVLTCKIEELGSELKEHYKIEAFTPVLVPAQEPVILLGQIGCDTNGKLNSK 264
Query: 267 SVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASKLVDQIPLP 324
SV+L+ EHS G ++ +DL +L E+SLFPGQVV +EG N +G L+A+KL + +PLP
Sbjct: 265 SVILEGDREHSSGAQIPVDLSELKEYSLFPGQVVIMEGINTTGRKLVATKLYEGLPLP 322
>UNIPROTKB|B4DNB4 [details] [associations]
symbol:POLA2 "cDNA FLJ60312, highly similar to DNA
polymerase subunit alpha B" species:9606 "Homo sapiens" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR007185 Pfam:PF04042 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 InterPro:IPR016722
InterPro:IPR013627 Pfam:PF08418 PIRSF:PIRSF018300 UniGene:Hs.201897
HGNC:HGNC:30073 ChiTaRS:POLA2 EMBL:AP000944 EMBL:AK297842
IPI:IPI00908664 SMR:B4DNB4 STRING:B4DNB4 Ensembl:ENST00000541089
UCSC:uc010rod.1 Uniprot:B4DNB4
Length = 361
Score = 249 (92.7 bits), Expect = 4.4e-37, Sum P(2) = 4.4e-37
Identities = 66/235 (28%), Positives = 116/235 (49%)
Query: 353 EEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSS 412
E+ +++A GP+TT+D++ ++PL +LI+ +P + IL GPF+D++H Q++ S
Sbjct: 130 EQSMVLVACGPYTTSDSITYDPLLDLIAVINHDRPDVCILFGPFLDAKHEQVENCLLTSP 189
Query: 413 FDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLXX--XXXXXXXXXXXXXXT 470
F++IF + LR + + GS + + VPS+RD +H+ V
Sbjct: 190 FEDIFK-QCLRTIIEGTRSSGSHL--VFVPSLRDVHHEPVYPQPPFSYSDLSREDKKQVQ 246
Query: 471 SLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRMEIYSLDISLMGXXXXX 530
++ P + N + G + D+L L EE+S S GTS DR +S + +
Sbjct: 247 FVSEPCSLSINGVIFGLTSTDLLFHLGAEEIS--SSSGTS-DR---FSRILKHILTQRSY 300
Query: 531 XXXXXXXEGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQK 585
E + +D+ + PD++I+PS+++YF+KV G N QK
Sbjct: 301 YPLYPPQEDMAIDYESFYVYAQLPVTPDVLIIPSELRYFVKV----GLNSAFSQK 351
Score = 208 (78.3 bits), Expect = 4.4e-37, Sum P(2) = 4.4e-37
Identities = 46/118 (38%), Positives = 69/118 (58%)
Query: 207 MYDRTEDRFNALENRIRKHANALVSSGLYEEPTDPTVASQRTLFAVGMICCDGDGHLNDK 266
M+ + D L +I + + L E T +Q + +G I CD +G LN+K
Sbjct: 1 MFQKLPDIREVLTCKIEELGSELKEHYKIEAFTPLLAPAQEPVTLLGQIGCDSNGKLNNK 60
Query: 267 SVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASKLVDQIPLP 324
SV+L+ EHS G ++ +DL +L E+SLFPGQVV +EG N +G L+A+KL + +PLP
Sbjct: 61 SVILEGDREHSSGAQIPVDLSELKEYSLFPGQVVIMEGINTTGRKLVATKLYEGVPLP 118
>UNIPROTKB|F1MXS4 [details] [associations]
symbol:POLA2 "DNA polymerase alpha subunit B" species:9913
"Bos taurus" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007185
Pfam:PF04042 GO:GO:0003677 GO:GO:0006260 GO:GO:0003887
UniGene:Bt.37506 InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 GeneTree:ENSGT00390000016784 EMBL:DAAA02063561
IPI:IPI00841939 Ensembl:ENSBTAT00000045520 ArrayExpress:F1MXS4
Uniprot:F1MXS4
Length = 600
Score = 256 (95.2 bits), Expect = 4.7e-37, Sum P(2) = 4.7e-37
Identities = 72/246 (29%), Positives = 121/246 (49%)
Query: 353 EEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSS 412
E+ +++A GP+TT+D++ F+PL +LI+ R +P + IL GPF+D++H Q++ SS
Sbjct: 340 EQFMVLVACGPYTTSDSITFDPLLDLITIINRDRPDVCILFGPFLDAKHEQVESCLLTSS 399
Query: 413 FDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLXX--XXXXXXXXXXXXXXT 470
F+++F + LR + + GS + I+VPS+RD +H+ V
Sbjct: 400 FEDVFK-QCLRTIIEGTRSSGSHL--IIVPSLRDVHHEPVYPQPPFSCSDLLREDKKRVR 456
Query: 471 SLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRMEIYSLDISLMGXXXXX 530
++ P T N + G + D+L + EE+S S GTS DR +S + +
Sbjct: 457 LVSEPCTLSINGVIFGLTSTDLLFHMGAEEIS--SSSGTS-DR---FSRILRHILTQRSY 510
Query: 531 XXXXXXXEGIPLDFSLAQEALTISTIPDIIILPSDMKYFIK-VLSLGGRNEGEEQKKCVC 589
E + +D+ + PD+ I PS+++YF+K +L N G K V
Sbjct: 511 YPLYPPQEDMAIDYENFYLYAQLPVTPDVFIAPSELRYFVKDILGCVCVNPGRLTKGQVG 570
Query: 590 VNPGRL 595
GRL
Sbjct: 571 GTFGRL 576
Score = 220 (82.5 bits), Expect = 4.7e-37, Sum P(2) = 4.7e-37
Identities = 53/136 (38%), Positives = 79/136 (58%)
Query: 192 SLMVHGSGPEP--GC-RFMYDRTEDRFNALENRIRKHANALVSSGLYEEPTDPTVASQRT 248
SL V G PEP G ++M+ + D L +I + + L E V +Q
Sbjct: 194 SLKVLGH-PEPLTGSYKYMFQKLPDIREVLTCKIEELGSELKEHYKIEAFAPILVPAQEP 252
Query: 249 LFAVGMICCDGDGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPS 308
+ +G I CD +G LN KSV+L+ +EHS G ++ +DL +L E+SLFPGQVV +EG N +
Sbjct: 253 VTLLGQIGCDSNGKLNHKSVILEGDLEHSSGAQIPVDLSELKEYSLFPGQVVVMEGINTT 312
Query: 309 GHCLIASKLVDQIPLP 324
G L+A++L + +PLP
Sbjct: 313 GRKLVATRLYEGVPLP 328
Score = 122 (48.0 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 27/71 (38%), Positives = 39/71 (54%)
Query: 538 EGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAK 597
E + +D+ + PD+ I PS+++YF+K + LG CVCVNPGRL K
Sbjct: 518 EDMAIDYENFYLYAQLPVTPDVFIAPSELRYFVKDI-LG----------CVCVNPGRLTK 566
Query: 598 GEGSGTFAEIY 608
G+ GTF +Y
Sbjct: 567 GQVGGTFGRLY 577
>UNIPROTKB|F1MLC0 [details] [associations]
symbol:POLA2 "DNA polymerase alpha subunit B" species:9913
"Bos taurus" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0000060 "protein
import into nucleus, translocation" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR007185 Pfam:PF04042
GO:GO:0005737 GO:GO:0003677 GO:GO:0006260 GO:GO:0000060
GO:GO:0003887 InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 GeneTree:ENSGT00390000016784 GO:GO:0005658
OMA:QVGGTFG EMBL:DAAA02063561 IPI:IPI01017580
Ensembl:ENSBTAT00000015221 ArrayExpress:F1MLC0 Uniprot:F1MLC0
Length = 604
Score = 256 (95.2 bits), Expect = 4.9e-37, Sum P(2) = 4.9e-37
Identities = 65/222 (29%), Positives = 113/222 (50%)
Query: 353 EEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSS 412
E+ +++A GP+TT+D++ F+PL +LI+ R +P + IL GPF+D++H Q++ SS
Sbjct: 340 EQFMVLVACGPYTTSDSITFDPLLDLITIINRDRPDVCILFGPFLDAKHEQVESCLLTSS 399
Query: 413 FDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLXX--XXXXXXXXXXXXXXT 470
F+++F + LR + + GS + I+VPS+RD +H+ V
Sbjct: 400 FEDVFK-QCLRTIIEGTRSSGSHL--IIVPSLRDVHHEPVYPQPPFSCSDLLREDKKRVR 456
Query: 471 SLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRMEIYSLDISLMGXXXXX 530
++ P T N + G + D+L + EE+S S GTS DR +S + +
Sbjct: 457 LVSEPCTLSINGVIFGLTSTDLLFHMGAEEIS--SSSGTS-DR---FSRILRHILTQRSY 510
Query: 531 XXXXXXXEGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKV 572
E + +D+ + PD+ I PS+++YF+KV
Sbjct: 511 YPLYPPQEDMAIDYENFYLYAQLPVTPDVFIAPSELRYFVKV 552
Score = 220 (82.5 bits), Expect = 4.9e-37, Sum P(2) = 4.9e-37
Identities = 53/136 (38%), Positives = 79/136 (58%)
Query: 192 SLMVHGSGPEP--GC-RFMYDRTEDRFNALENRIRKHANALVSSGLYEEPTDPTVASQRT 248
SL V G PEP G ++M+ + D L +I + + L E V +Q
Sbjct: 194 SLKVLGH-PEPLTGSYKYMFQKLPDIREVLTCKIEELGSELKEHYKIEAFAPILVPAQEP 252
Query: 249 LFAVGMICCDGDGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPS 308
+ +G I CD +G LN KSV+L+ +EHS G ++ +DL +L E+SLFPGQVV +EG N +
Sbjct: 253 VTLLGQIGCDSNGKLNHKSVILEGDLEHSSGAQIPVDLSELKEYSLFPGQVVVMEGINTT 312
Query: 309 GHCLIASKLVDQIPLP 324
G L+A++L + +PLP
Sbjct: 313 GRKLVATRLYEGVPLP 328
>UNIPROTKB|G3V8U6 [details] [associations]
symbol:Pola2 "Polymerase (DNA directed), alpha 2, isoform
CRA_a" species:10116 "Rattus norvegicus" [GO:0000060 "protein
import into nucleus, translocation" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] InterPro:IPR007185
Pfam:PF04042 RGD:621817 GO:GO:0003677 GO:GO:0006260 GO:GO:0003887
InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 GeneTree:ENSGT00390000016784 OMA:QVGGTFG
UniGene:Rn.205002 EMBL:CH473953 Ensembl:ENSRNOT00000028406
Uniprot:G3V8U6
Length = 600
Score = 250 (93.1 bits), Expect = 1.6e-35, Sum P(2) = 1.6e-35
Identities = 71/258 (27%), Positives = 123/258 (47%)
Query: 353 EEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSS 412
E+ +++A GP+TT+D++ ++PL +LIS +P + IL GPF+D++H Q++ S
Sbjct: 338 EQTMVLVACGPYTTSDSITYDPLLDLISTINHDRPDVCILFGPFLDAKHEQVENCKLTSP 397
Query: 413 FDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLXX--XXXXXXXXXXXXXXT 470
F++IF + LR + + GS + + VPS+RD +H+ V
Sbjct: 398 FEDIFK-QCLRTVIEGTRSSGSHL--VFVPSLRDVHHEPVYPQPPFTFSELPREDKKRVQ 454
Query: 471 SLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRMEIYSLDISLMGXXXXX 530
++ P N + G + D+L + EE+ CS GTS DR +S + +
Sbjct: 455 FVSEPCNLSINGVMFGLTSTDLLFHIGAEEI--CSSSGTS-DR---FSRILKHILTQRSY 508
Query: 531 XXXXXXXEGIPLDFSLAQEALTISTIPDIIILPSDMKYFIK-VLSLGGRNEGEEQKKCVC 589
E + +D+ + PD+ I+PS+++YF+K + N G K V
Sbjct: 509 YPLYPPHEDMAIDYENFYTYAQLPVTPDVFIVPSELRYFVKDIFGCVCMNPGRLTKGQVG 568
Query: 590 VNPGRL-AKGEGSGTFAE 606
GRL + + GT +E
Sbjct: 569 GTFGRLYLRRQPKGTDSE 586
Score = 212 (79.7 bits), Expect = 1.6e-35, Sum P(2) = 1.6e-35
Identities = 52/136 (38%), Positives = 76/136 (55%)
Query: 192 SLMVHGSGPEP---GCRFMYDRTEDRFNALENRIRKHANALVSSGLYEEPTDPTVASQRT 248
SL V G PEP + M+ + D L +I + + L E T V +Q
Sbjct: 192 SLKVMGY-PEPLTSSYKTMFQQLPDIREVLTCKIEELGSELKEHYKIEAFTPLLVPAQEP 250
Query: 249 LFAVGMICCDGDGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPS 308
+ +G I CD +G LN KSV+L+ EHS G ++ +D+ +L ++SLFPGQVV +EG N +
Sbjct: 251 VILLGQIGCDSNGRLNSKSVILEGDREHSSGAQIPVDMSELKDYSLFPGQVVIMEGFNTT 310
Query: 309 GHCLIASKLVDQIPLP 324
G L A+KL + +PLP
Sbjct: 311 GRRLTATKLYEGVPLP 326
Score = 126 (49.4 bits), Expect = 3.1e-22, Sum P(2) = 3.1e-22
Identities = 34/111 (30%), Positives = 52/111 (46%)
Query: 504 CSKDGTSNDRMEIYSLDISLMGXXXXXXXXXXXXEGIPLDFSLAQEALTISTIPDIIILP 563
CS GTS DR +S + + E + +D+ + PD+ I+P
Sbjct: 486 CSSSGTS-DR---FSRILKHILTQRSYYPLYPPHEDMAIDYENFYTYAQLPVTPDVFIVP 541
Query: 564 SDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEGSGTFAEIYYHGSPE 614
S+++YF+K + G CVC+NPGRL KG+ GTF +Y P+
Sbjct: 542 SELRYFVKDI-FG----------CVCMNPGRLTKGQVGGTFGRLYLRRQPK 581
>RGD|621817 [details] [associations]
symbol:Pola2 "polymerase (DNA directed), alpha 2, accessory
subunit" species:10116 "Rattus norvegicus" [GO:0000060 "protein
import into nucleus, translocation" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IMP] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005658 "alpha DNA polymerase:primase complex"
evidence=IC;ISO;TAS] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006260 "DNA replication" evidence=ISO;IMP;TAS] [GO:0046982
"protein heterodimerization activity" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR007185 Pfam:PF04042
RGD:621817 GO:GO:0005737 GO:GO:0003677 GO:GO:0006260 GO:GO:0000060
GO:GO:0003887 eggNOG:COG5214 HOGENOM:HOG000007382
InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 GO:GO:0005658 HOVERGEN:HBG055628
OrthoDB:EOG4933HH EMBL:AJ245648 EMBL:AJ011606 IPI:IPI00214475
UniGene:Rn.205002 STRING:O89043 PRIDE:O89043 UCSC:RGD:621817
InParanoid:O89043 Genevestigator:O89043
GermOnline:ENSRNOG00000020906 Uniprot:O89043
Length = 600
Score = 250 (93.1 bits), Expect = 2.0e-35, Sum P(2) = 2.0e-35
Identities = 71/258 (27%), Positives = 123/258 (47%)
Query: 353 EEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSS 412
E+ +++A GP+TT+D++ ++PL +LIS +P + IL GPF+D++H Q++ S
Sbjct: 338 EQTMVLVACGPYTTSDSITYDPLLDLISTINHDRPDVCILFGPFLDAKHEQVENCKLTSP 397
Query: 413 FDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLXX--XXXXXXXXXXXXXXT 470
F++IF + LR + + GS + + VPS+RD +H+ V
Sbjct: 398 FEDIFK-QCLRTVIEGTRSSGSHL--VFVPSLRDVHHEPVYPQPPFTFSELPREDKKRVQ 454
Query: 471 SLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRMEIYSLDISLMGXXXXX 530
++ P N + G + D+L + EE+ CS GTS DR +S + +
Sbjct: 455 FVSEPCNLSINGVMFGLTSTDLLFHIGAEEI--CSSSGTS-DR---FSRILKHILTQRSY 508
Query: 531 XXXXXXXEGIPLDFSLAQEALTISTIPDIIILPSDMKYFIK-VLSLGGRNEGEEQKKCVC 589
E + +D+ + PD+ I+PS+++YF+K + N G K V
Sbjct: 509 YPLYPPHEDMAIDYENFYTYAQLPVTPDVFIVPSELRYFVKDIFGCVCMNPGRLTKGQVG 568
Query: 590 VNPGRL-AKGEGSGTFAE 606
GRL + + GT +E
Sbjct: 569 GTFGRLYLRRQPKGTDSE 586
Score = 211 (79.3 bits), Expect = 2.0e-35, Sum P(2) = 2.0e-35
Identities = 52/136 (38%), Positives = 76/136 (55%)
Query: 192 SLMVHGSGPEP---GCRFMYDRTEDRFNALENRIRKHANALVSSGLYEEPTDPTVASQRT 248
SL V G PEP + M+ + D L +I + + L E T V +Q
Sbjct: 192 SLKVMGY-PEPLTSSYKTMFQQLPDIREVLTCKIEELGSELKEHYKIEAFTPLLVPAQEP 250
Query: 249 LFAVGMICCDGDGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPS 308
+ +G I CD +G LN KSV+L+ EHS G ++ +D+ +L ++SLFPGQVV +EG N +
Sbjct: 251 VILLGQIGCDSNGRLNSKSVILEGDREHSSGAQIPVDVSELKDYSLFPGQVVIMEGFNTT 310
Query: 309 GHCLIASKLVDQIPLP 324
G L A+KL + +PLP
Sbjct: 311 GRRLTATKLYEGVPLP 326
Score = 126 (49.4 bits), Expect = 4.0e-22, Sum P(2) = 4.0e-22
Identities = 34/111 (30%), Positives = 52/111 (46%)
Query: 504 CSKDGTSNDRMEIYSLDISLMGXXXXXXXXXXXXEGIPLDFSLAQEALTISTIPDIIILP 563
CS GTS DR +S + + E + +D+ + PD+ I+P
Sbjct: 486 CSSSGTS-DR---FSRILKHILTQRSYYPLYPPHEDMAIDYENFYTYAQLPVTPDVFIVP 541
Query: 564 SDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEGSGTFAEIYYHGSPE 614
S+++YF+K + G CVC+NPGRL KG+ GTF +Y P+
Sbjct: 542 SELRYFVKDI-FG----------CVCMNPGRLTKGQVGGTFGRLYLRRQPK 581
>MGI|MGI:99690 [details] [associations]
symbol:Pola2 "polymerase (DNA directed), alpha 2"
species:10090 "Mus musculus" [GO:0000060 "protein import into
nucleus, translocation" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IDA] [GO:0006260 "DNA
replication" evidence=ISO;IDA] [GO:0046982 "protein
heterodimerization activity" evidence=IPI] InterPro:IPR007185
Pfam:PF04042 MGI:MGI:99690 GO:GO:0005737 GO:GO:0003677
GO:GO:0006260 GO:GO:0000060 EMBL:CH466612 GO:GO:0003887 CTD:23649
eggNOG:COG5214 HOGENOM:HOG000007382 KO:K02321 InterPro:IPR016722
InterPro:IPR013627 Pfam:PF08418 PIRSF:PIRSF018300
GeneTree:ENSGT00390000016784 GO:GO:0005658 HOVERGEN:HBG055628
OMA:QVGGTFG OrthoDB:EOG4933HH EMBL:D13546 EMBL:AK150099
EMBL:BC021424 EMBL:BC064795 IPI:IPI00331177 PIR:B46642
RefSeq:NP_032919.2 UniGene:Mm.209931 ProteinModelPortal:P33611
SMR:P33611 IntAct:P33611 STRING:P33611 PhosphoSite:P33611
PaxDb:P33611 PRIDE:P33611 Ensembl:ENSMUST00000025752 GeneID:18969
KEGG:mmu:18969 InParanoid:Q8VDR3 BindingDB:P33611 ChEMBL:CHEMBL3005
NextBio:295312 Bgee:P33611 CleanEx:MM_POLA2 Genevestigator:P33611
GermOnline:ENSMUSG00000024833 Uniprot:P33611
Length = 600
Score = 243 (90.6 bits), Expect = 6.9e-35, Sum P(3) = 6.9e-35
Identities = 60/221 (27%), Positives = 110/221 (49%)
Query: 353 EEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSS 412
E+ +++A GP+TT+D++ ++PL +LI+ R QP + IL GPF+D++H Q++ S
Sbjct: 338 EQTMVVVACGPYTTSDSITYDPLLDLIAIINRDQPDVCILFGPFLDAKHEQVENCKLTSP 397
Query: 413 FDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLXX--XXXXXXXXXXXXXXT 470
F+++F + LR + + GS + + VPS+RD +H+ V
Sbjct: 398 FEDVFK-QCLRTVIEGTRSSGSHL--VFVPSLRDVHHEPVYPQPPFTFSELSREDKKRVQ 454
Query: 471 SLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRMEIYSLDISLMGXXXXX 530
++ P + N + G + D+L + EE+ S GTS DR +S + +
Sbjct: 455 FVSEPCSLSINGVMFGLTSTDLLFHIGAEEIF--SSSGTS-DR---FSRVLKHILTQRSY 508
Query: 531 XXXXXXXEGIPLDFSLAQEALTISTIPDIIILPSDMKYFIK 571
E + +D+ + PD+ I+PS+++YF+K
Sbjct: 509 YPLYPPHEDMAIDYENFYTYAQLPVTPDVFIVPSELRYFVK 549
Score = 212 (79.7 bits), Expect = 6.9e-35, Sum P(3) = 6.9e-35
Identities = 54/136 (39%), Positives = 77/136 (56%)
Query: 192 SLMVHGSGPEP--GC-RFMYDRTEDRFNALENRIRKHANALVSSGLYEEPTDPTVASQRT 248
SL V G PEP G + M+ + L ++I + + L E T V +Q
Sbjct: 192 SLKVVGD-PEPLTGSYKAMFQQLMGVREVLTSKIEELGSELKEHHKIEAFTPLLVPAQEP 250
Query: 249 LFAVGMICCDGDGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPS 308
+ +G I CD +G LN KSV+L+ EHS G ++ +DL +L E+SLFPGQVV +EG N +
Sbjct: 251 VILLGQIGCDSNGKLNSKSVILEGDQEHSYGAQIPVDLSELKEYSLFPGQVVIMEGFNTT 310
Query: 309 GHCLIASKLVDQIPLP 324
G L A+KL + +PLP
Sbjct: 311 GRRLTATKLYEGVPLP 326
Score = 132 (51.5 bits), Expect = 5.0e-23, Sum P(3) = 5.0e-23
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 538 EGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAK 597
E + +D+ + PD+ I+PS+++YF+K + G CVCVNPGRL K
Sbjct: 516 EDMAIDYENFYTYAQLPVTPDVFIVPSELRYFVKDI-FG----------CVCVNPGRLTK 564
Query: 598 GEGSGTFAEIYYHGSPEMMN 617
G+ GTF +Y P+ M+
Sbjct: 565 GQVGGTFGRLYLRRQPKAMD 584
Score = 43 (20.2 bits), Expect = 6.9e-35, Sum P(3) = 6.9e-35
Identities = 21/79 (26%), Positives = 39/79 (49%)
Query: 19 EGEVLKKCLTFCINYNLK--PSDLVSSWEVYYLNRQLDE---STVKDDEMDGF--MLHLQ 71
E ++ + + FC + D+++S+E LN++L + S KD G ++ +Q
Sbjct: 38 EDGMVSELIAFCTSAGKTCLTVDILNSFEYEVLNKKLSKAWHSASKDSGHAGTRDIVSIQ 97
Query: 72 NEQKEAIIKEEPSLHIYSS 90
E EA +EE L Y++
Sbjct: 98 -ELIEAEEEEETLLSSYTT 115
>UNIPROTKB|Q14181 [details] [associations]
symbol:POLA2 "DNA polymerase alpha subunit B" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0000060
"protein import into nucleus, translocation" evidence=IEA]
[GO:0005658 "alpha DNA polymerase:primase complex" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000082 "G1/S transition of mitotic
cell cycle" evidence=TAS] [GO:0000084 "S phase of mitotic cell
cycle" evidence=TAS] [GO:0000216 "M/G1 transition of mitotic cell
cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006270 "DNA replication
initiation" evidence=TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR007185 Pfam:PF04042 GO:GO:0005737 Reactome:REACT_115566
GO:GO:0005654 Reactome:REACT_21300 GO:GO:0003677 GO:GO:0000082
GO:GO:0006270 GO:GO:0000060 GO:GO:0000216 GO:GO:0000084
GO:GO:0000722 Reactome:REACT_383 GO:GO:0006271 GO:GO:0003887
DrugBank:DB00851 GO:GO:0032201 CTD:23649 eggNOG:COG5214
HOGENOM:HOG000007382 KO:K02321 InterPro:IPR016722
InterPro:IPR013627 Pfam:PF08418 PIRSF:PIRSF018300 GO:GO:0005658
EMBL:L24559 EMBL:CR456737 EMBL:BC002990 EMBL:BC001347
IPI:IPI00290272 PIR:S39621 RefSeq:NP_002680.2 UniGene:Hs.201897
PDB:2KEB PDB:4E2I PDBsum:2KEB PDBsum:4E2I ProteinModelPortal:Q14181
SMR:Q14181 IntAct:Q14181 MINT:MINT-1382407 STRING:Q14181
PhosphoSite:Q14181 DMDM:90110415 PaxDb:Q14181 PeptideAtlas:Q14181
PRIDE:Q14181 DNASU:23649 Ensembl:ENST00000265465 GeneID:23649
KEGG:hsa:23649 UCSC:uc001odj.3 GeneCards:GC11P065029
HGNC:HGNC:30073 HPA:HPA037570 neXtProt:NX_Q14181 PharmGKB:PA411
HOVERGEN:HBG055628 InParanoid:Q14181 OMA:QVGGTFG OrthoDB:EOG4933HH
PhylomeDB:Q14181 ChiTaRS:POLA2 EvolutionaryTrace:Q14181
GenomeRNAi:23649 NextBio:46481 ArrayExpress:Q14181 Bgee:Q14181
CleanEx:HS_POLA2 Genevestigator:Q14181 GermOnline:ENSG00000014138
Uniprot:Q14181
Length = 598
Score = 244 (91.0 bits), Expect = 2.0e-34, Sum P(2) = 2.0e-34
Identities = 66/236 (27%), Positives = 116/236 (49%)
Query: 353 EEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSS 412
E+ +++A GP+TT+D++ ++PL +LI+ +P + IL GPF+D++H Q++ S
Sbjct: 338 EQSMVLVACGPYTTSDSITYDPLLDLIAVINHDRPDVCILFGPFLDAKHEQVENCLLTSP 397
Query: 413 FDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLXX--XXXXXXXXXXXXXXT 470
F++IF + LR + + GS + + VPS+RD +H+ V
Sbjct: 398 FEDIFK-QCLRTIIEGTRSSGSHL--VFVPSLRDVHHEPVYPQPPFSYSDLSREDKKQVQ 454
Query: 471 SLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRMEIYSLDISLMGXXXXX 530
++ P + N + G + D+L L EE+S S GTS DR +S + +
Sbjct: 455 FVSEPCSLSINGVIFGLTSTDLLFHLGAEEIS--SSSGTS-DR---FSRILKHILTQRSY 508
Query: 531 XXXXXXXEGIPLDFSLAQEALTISTIPDIIILPSDMKYFIK-VLSLGGRNEGEEQK 585
E + +D+ + PD++I+PS+++YF+K VL N G K
Sbjct: 509 YPLYPPQEDMAIDYESFYVYAQLPVTPDVLIIPSELRYFVKDVLGCVCVNPGRLTK 564
Score = 208 (78.3 bits), Expect = 2.0e-34, Sum P(2) = 2.0e-34
Identities = 46/118 (38%), Positives = 69/118 (58%)
Query: 207 MYDRTEDRFNALENRIRKHANALVSSGLYEEPTDPTVASQRTLFAVGMICCDGDGHLNDK 266
M+ + D L +I + + L E T +Q + +G I CD +G LN+K
Sbjct: 209 MFQKLPDIREVLTCKIEELGSELKEHYKIEAFTPLLAPAQEPVTLLGQIGCDSNGKLNNK 268
Query: 267 SVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASKLVDQIPLP 324
SV+L+ EHS G ++ +DL +L E+SLFPGQVV +EG N +G L+A+KL + +PLP
Sbjct: 269 SVILEGDREHSSGAQIPVDLSELKEYSLFPGQVVIMEGINTTGRKLVATKLYEGVPLP 326
Score = 132 (51.5 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 28/71 (39%), Positives = 42/71 (59%)
Query: 538 EGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAK 597
E + +D+ + PD++I+PS+++YF+K + LG CVCVNPGRL K
Sbjct: 516 EDMAIDYESFYVYAQLPVTPDVLIIPSELRYFVKDV-LG----------CVCVNPGRLTK 564
Query: 598 GEGSGTFAEIY 608
G+ GTFA +Y
Sbjct: 565 GQVGGTFARLY 575
>UNIPROTKB|F6XEE7 [details] [associations]
symbol:POLA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007185
Pfam:PF04042 GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 CTD:23649
KO:K02321 InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 GeneTree:ENSGT00390000016784 OMA:QVGGTFG
EMBL:AAEX03011641 Ensembl:ENSCAFT00000021706 RefSeq:XP_533234.2
GeneID:476025 KEGG:cfa:476025 Uniprot:F6XEE7
Length = 595
Score = 239 (89.2 bits), Expect = 2.8e-34, Sum P(2) = 2.8e-34
Identities = 72/246 (29%), Positives = 118/246 (47%)
Query: 353 EEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSS 412
E+ +++A GP+TT+D++ ++PL +LI+ R QP + IL GPF+D++H Q++ S
Sbjct: 334 EQNMVLVACGPYTTSDSITYDPLLDLIAIINRDQPDVCILFGPFLDAKHEQVENCLLTSP 393
Query: 413 FDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLXX--XXXXXXXXXXXXXXT 470
F++IF + LR + + GS + + VPS+RD + + V
Sbjct: 394 FEDIFK-QCLRTIIEGTRSSGSHL--VFVPSVRDVHCEPVYPQPPFSYSDLAREDRKRVH 450
Query: 471 SLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRMEIYSLDISLMGXXXXX 530
++ P N + G + D+L + EE+S S GTS DR+ S + +
Sbjct: 451 FVSEPCNLSINGVIFGLTSTDLLFHMGAEEISSAS--GTS-DRL---SRILKHILTQRSY 504
Query: 531 XXXXXXXEGIPLDFSLAQEALTISTIPDIIILPSDMKYFIK-VLSLGGRNEGEEQKKCVC 589
E + +D+ + PDI I+PS++KYF+K VL N G K V
Sbjct: 505 YPLYPPQEDMAIDYENFYIYAQLPITPDIFIIPSELKYFVKDVLGCVCVNPGRLTKGQVG 564
Query: 590 VNPGRL 595
GRL
Sbjct: 565 GTFGRL 570
Score = 212 (79.7 bits), Expect = 2.8e-34, Sum P(2) = 2.8e-34
Identities = 47/118 (39%), Positives = 70/118 (59%)
Query: 207 MYDRTEDRFNALENRIRKHANALVSSGLYEEPTDPTVASQRTLFAVGMICCDGDGHLNDK 266
M+ + D + L +I + + L E T V +Q + +G I CD +G LN K
Sbjct: 205 MFQKLPDIRDVLTCKIEELGSELKEHYKIEAFTPVLVPAQEPVILLGQIGCDTNGKLNSK 264
Query: 267 SVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASKLVDQIPLP 324
SV+L+ EHS G ++ +DL +L E+SLFPGQVV +EG N +G L+A+KL + +PLP
Sbjct: 265 SVILEGDREHSSGAQIPVDLSELKEYSLFPGQVVIMEGINTTGRKLVATKLYEGLPLP 322
Score = 123 (48.4 bits), Expect = 6.2e-22, Sum P(2) = 6.2e-22
Identities = 28/71 (39%), Positives = 40/71 (56%)
Query: 538 EGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAK 597
E + +D+ + PDI I+PS++KYF+K + LG CVCVNPGRL K
Sbjct: 512 EDMAIDYENFYIYAQLPITPDIFIIPSELKYFVKDV-LG----------CVCVNPGRLTK 560
Query: 598 GEGSGTFAEIY 608
G+ GTF ++
Sbjct: 561 GQVGGTFGRLF 571
>POMBASE|SPCC553.09c [details] [associations]
symbol:spb70 "DNA polymerase alpha B-subunit"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=TAS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006269 "DNA
replication, synthesis of RNA primer" evidence=IC] [GO:0006270 "DNA
replication initiation" evidence=NAS] InterPro:IPR007185
Pfam:PF04042 PomBase:SPCC553.09c GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003677 GO:GO:0000790 GO:GO:0006270
GO:GO:0003887 GO:GO:0006269 eggNOG:COG5214 KO:K02321
InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 GO:GO:0005658 PIR:T41395 RefSeq:NP_587765.1
IntAct:O74946 STRING:O74946 EnsemblFungi:SPCC553.09c.1
GeneID:2539135 KEGG:spo:SPCC553.09c OMA:FFPGQIV OrthoDB:EOG4HDX2Z
NextBio:20800307 Uniprot:O74946
Length = 574
Score = 389 (142.0 bits), Expect = 4.1e-34, P = 4.1e-34
Identities = 128/408 (31%), Positives = 189/408 (46%)
Query: 205 RFMYDRTEDRFNALENRIRKHANALVSSGLY---EEPTDPTVASQRTLFAVGMICCDGD- 260
R MY + D L++RI + AL E+ +P+ +Q + VG I +
Sbjct: 159 RIMYQKLYDSSEVLDDRIELFS-ALTCRKYNISDEDLANPSELTQEPVVVVGRIVVESTN 217
Query: 261 --GHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASKLV 318
G LN S+LL+SS G RVRL + L +S+FPGQ+V ++GSNPSG+ IA +++
Sbjct: 218 LGGRLNQNSILLESSRRLGAGVRVRLKVDDLPSYSIFPGQIVSVKGSNPSGNMFIAKEIL 277
Query: 319 DQIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEE-ISMIIAAGPFTTTDNLYFEPLKE 377
PLP PS + QE H+T V + + IS+ IA+GP++ D+L F PLK
Sbjct: 278 PIPPLPF-------PSSSK---QE-HATFVANTNNQPISIYIASGPWSLRDDLSFSPLKS 326
Query: 378 LISYAKRKQPQLLILLGPFVDSEHPQIKKG----TTDSSFDEIFHLEILRRLQDYVEYMG 433
+ISY + L+IL GPF+D H I+ G T+ +S +E+F + L
Sbjct: 327 MISYVNKNPVDLVILCGPFLDINHILIRTGNITGTSATSLEELFKERVTPILSQLT---- 382
Query: 434 SEVRAILVPSIRDANHDF-VLXXXXXXXXXXXXXXXXTSLTNPGTFEANQIKVGCCTVDV 492
IL+P I DA D NP F N + G T D+
Sbjct: 383 --CPCILIPHINDAASDHPAWPQDAFNRVALGLPSNFKCFPNPCMFSINDVVFGVSTNDI 440
Query: 493 LKQLSGEEMSRCSKDGTSNDRMEIYSLDISLMGXXXXXXXXXXXXEGIPLDFSLAQEALT 552
L S EE+ R G R+ + L + P + +A L
Sbjct: 441 LLHTSREELFRLPSHGNLFARLVSHVLH---QRHFYPLFPGGSLEKCNPSNLDIAHLKLG 497
Query: 553 --ISTIPDIIILPSDMKYFIK-VLSLGGRNEGEEQKKCVCVNPGRLAK 597
++T+PDI+ILPSD++YF+K V ++ N G+ K +N G AK
Sbjct: 498 EFLNTMPDILILPSDLRYFVKNVENVVSLNPGKATKG---INLGTFAK 542
Score = 241 (89.9 bits), Expect = 3.6e-18, Sum P(2) = 3.6e-18
Identities = 80/285 (28%), Positives = 126/285 (44%)
Query: 328 VVDVHPSMKQALDQEIHSTVVISRPEE-ISMIIAAGPFTTTDNLYFEPLKELISYAKRKQ 386
++ + P + ++ H+T V + + IS+ IA+GP++ D+L F PLK +ISY +
Sbjct: 276 ILPIPPLPFPSSSKQEHATFVANTNNQPISIYIASGPWSLRDDLSFSPLKSMISYVNKNP 335
Query: 387 PQLLILLGPFVDSEHPQIKKGT-TDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIR 445
L+IL GPF+D H I+ G T +S + L R+ + + IL+P I
Sbjct: 336 VDLVILCGPFLDINHILIRTGNITGTSATSLEEL-FKERVTPILSQLTCP--CILIPHIN 392
Query: 446 DANHDF-VLXXXXXXXXXXXXXXXXTSLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRC 504
DA D NP F N + G T D+L S EE+ R
Sbjct: 393 DAASDHPAWPQDAFNRVALGLPSNFKCFPNPCMFSINDVVFGVSTNDILLHTSREELFRL 452
Query: 505 SKDGTSNDRMEIYSLDISLMGXXXXXXXXXXXXEGIPLDFSLAQEALT--ISTIPDIIIL 562
G R+ + L + P + +A L ++T+PDI+IL
Sbjct: 453 PSHGNLFARLVSHVLH---QRHFYPLFPGGSLEKCNPSNLDIAHLKLGEFLNTMPDILIL 509
Query: 563 PSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEGSGTFAEI 607
PSD++YF+K + + V +NPG+ KG GTFA++
Sbjct: 510 PSDLRYFVKNV-----------ENVVSLNPGKATKGINLGTFAKL 543
Score = 55 (24.4 bits), Expect = 3.6e-18, Sum P(2) = 3.6e-18
Identities = 32/130 (24%), Positives = 56/130 (43%)
Query: 17 VDEGEVLKKCLTFCINYNLKPSDLVSSWE-----VYYLNRQLDESTVKDDEMDGFMLHLQ 71
+D+ L LT C YN+ DL + E V + R + EST ++ + L+
Sbjct: 172 LDDRIELFSALT-CRKYNISDEDLANPSELTQEPVVVVGRIVVESTNLGGRLNQNSILLE 230
Query: 72 NEQKEAI-------IKEEPSLHIYSSKDVDMILNDEDEN--IAEDILGTPPDNLKLYSDA 122
+ ++ + + PS I+ + V + ++ N IA++IL PP S
Sbjct: 231 SSRRLGAGVRVRLKVDDLPSYSIFPGQIVSVKGSNPSGNMFIAKEILPIPPLPFPSSSKQ 290
Query: 123 LDSTYKANAN 132
+T+ AN N
Sbjct: 291 EHATFVANTN 300
>UNIPROTKB|Q58D13 [details] [associations]
symbol:POLA2 "DNA polymerase alpha subunit B" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007185 Pfam:PF04042 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0003887 EMBL:BT021784 IPI:IPI00686582
RefSeq:NP_001019713.2 UniGene:Bt.37506 STRING:Q58D13 GeneID:514793
KEGG:bta:514793 CTD:23649 eggNOG:COG5214 HOGENOM:HOG000007382
InParanoid:Q58D13 KO:K02321 BindingDB:Q58D13 ChEMBL:CHEMBL5259
NextBio:20871515 InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 Uniprot:Q58D13
Length = 604
Score = 345 (126.5 bits), Expect = 1.1e-28, P = 1.1e-28
Identities = 85/248 (34%), Positives = 138/248 (55%)
Query: 192 SLMVHGSGPEP---GCRFMYDRTEDRFNALENRIRKHANALVSSGLYEEPTDPTVASQRT 248
SL V G PEP ++M+ + D L +I + + L E V +Q
Sbjct: 194 SLKVLGH-PEPLTGSYKYMFQKLPDIREVLTCKIEELGSELKEHYKIEAFAPILVPAQEP 252
Query: 249 LFAVGMICCDGDGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPS 308
+ +G I CD +G LN KSV+L+ +EHS G ++ +DL +L E+SLFPGQVV +EG N +
Sbjct: 253 VTLLGQIGCDSNGKLNHKSVILEGDLEHSSGAQIPVDLSELKEYSLFPGQVVVMEGINTT 312
Query: 309 GHCLIASKLVDQIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEEISMIIAAGPFTTTD 368
G L+A++L + +PLP P D+E + E+ +++A GP+TT+D
Sbjct: 313 GRKLVATRLYEGVPLPFH-----QP------DEEDGDS------EQFMVLVACGPYTTSD 355
Query: 369 NLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDY 428
++ F+PL +LI+ R +P + IL GPF+D++H Q++ SSF+++F + LR + +
Sbjct: 356 SITFDPLLDLITIINRDRPDVCILFGPFLDAKHEQVESCLLTSSFEDVFK-QCLRTIIEG 414
Query: 429 VEYMGSEV 436
GS +
Sbjct: 415 TRSSGSHL 422
Score = 256 (95.2 bits), Expect = 1.0e-18, P = 1.0e-18
Identities = 65/222 (29%), Positives = 113/222 (50%)
Query: 353 EEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSS 412
E+ +++A GP+TT+D++ F+PL +LI+ R +P + IL GPF+D++H Q++ SS
Sbjct: 340 EQFMVLVACGPYTTSDSITFDPLLDLITIINRDRPDVCILFGPFLDAKHEQVESCLLTSS 399
Query: 413 FDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLXX--XXXXXXXXXXXXXXT 470
F+++F + LR + + GS + I+VPS+RD +H+ V
Sbjct: 400 FEDVFK-QCLRTIIEGTRSSGSHL--IIVPSLRDVHHEPVYPQPPFSCSDLLREDKKRVR 456
Query: 471 SLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRMEIYSLDISLMGXXXXX 530
++ P T N + G + D+L + EE+S S GTS DR +S + +
Sbjct: 457 LVSEPCTLSINGVIFGLTSTDLLFHMGAEEIS--SSSGTS-DR---FSRILRHILTQRSY 510
Query: 531 XXXXXXXEGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKV 572
E + +D+ + PD+ I PS+++YF+KV
Sbjct: 511 YPLYPPQEDMAIDYENFYLYAQLPVTPDVFIAPSELRYFVKV 552
>SGD|S000000131 [details] [associations]
symbol:POL12 "B subunit of DNA polymerase alpha-primase
complex" species:4932 "Saccharomyces cerevisiae" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA;IDA]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IDA] [GO:0016233 "telomere
capping" evidence=IGI;IMP;IPI] [GO:0006273 "lagging strand
elongation" evidence=IC] [GO:0006270 "DNA replication initiation"
evidence=IMP] InterPro:IPR007185 Pfam:PF04042 SGD:S000000131
GO:GO:0005635 GO:GO:0003677 EMBL:BK006936 GO:GO:0006270
GO:GO:0016233 GO:GO:0003887 GO:GO:0006273 eggNOG:COG5214 KO:K02321
InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 GeneTree:ENSGT00390000016784 GO:GO:0005658
OMA:FFPGQIV OrthoDB:EOG4HDX2Z EMBL:Z35796 EMBL:X74738 PIR:S45769
RefSeq:NP_009518.1 PDB:3FLO PDBsum:3FLO ProteinModelPortal:P38121
SMR:P38121 DIP:DIP-2536N IntAct:P38121 MINT:MINT-619251
STRING:P38121 PaxDb:P38121 EnsemblFungi:YBL035C GeneID:852245
KEGG:sce:YBL035C CYGD:YBL035c HOGENOM:HOG000248502
EvolutionaryTrace:P38121 NextBio:970805 Genevestigator:P38121
GermOnline:YBL035C Uniprot:P38121
Length = 705
Score = 309 (113.8 bits), Expect = 2.2e-28, Sum P(3) = 2.2e-28
Identities = 95/334 (28%), Positives = 152/334 (45%)
Query: 205 RFMYDRTEDRFNALENRIRKHANALVSSGLYEEPTD---PTVASQRTLFAVGMICCDG-- 259
R M ++ + L+++I ++ + P D PT+ SQ ++AVG I D
Sbjct: 248 RTMRQNLQEASDVLDDQIESFTK-IIQNHYKLSPNDFADPTIQSQSEIYAVGRIVPDSPT 306
Query: 260 -DGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASKLV 318
D LN +S+ L++S G+RVRLDL ++ E S F GQ+V +G N +G + +
Sbjct: 307 YDKFLNPESLSLETSRMGGVGRRVRLDLSQVNELSFFLGQIVAFKGKNANGDYFTVNSI- 365
Query: 319 DQIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEEISMIIAAGPFTTTDNLYFEPLKEL 378
+PLP +P+ + QE+ + +I+ GP+ DN E L+E
Sbjct: 366 --LPLP-------YPNSPVSTSQELQEFQANLEGSSLKVIVTCGPYFANDNFSLELLQEF 416
Query: 379 I-SYAKRKQPQLLILLGPFVDSEHPQIKKG---------TTDSSFDEIFHLEILRRLQDY 428
I S +P +LI+ GPF+D HP I G T + DE+F L+
Sbjct: 417 IDSINNEVKPHVLIMFGPFIDITHPLIASGKLPNFPQFKTQPKTLDELF----LKLFTPI 472
Query: 429 VEYMGSEVRAILVPSIRDA--NHDFVLXXXXXXXXXXXXXXXXTSLTNPGTFEANQIKVG 486
++ + ++ +L+PS +DA NH + NP +F+ N+I G
Sbjct: 473 LKTISPHIQTVLIPSTKDAISNHAAYPQASLIRKALQLPKRNFKCMANPSSFQINEIYFG 532
Query: 487 CCTVDVLKQLSGEEMSRCSKDGTSNDRMEIYSLD 520
C VD K L +E+ K GT++ R Y LD
Sbjct: 533 CSNVDTFKDL--KEVI---KGGTTSSR---YRLD 558
Score = 73 (30.8 bits), Expect = 2.2e-28, Sum P(3) = 2.2e-28
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 557 PDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEGS-GTFAEI 607
PDI+I+PS++++F +V+ + V +NPGR + G+ G++A+I
Sbjct: 628 PDIMIIPSELQHFARVV-----------QNVVVINPGRFIRATGNRGSYAQI 668
Score = 49 (22.3 bits), Expect = 2.2e-28, Sum P(3) = 2.2e-28
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 18 DEGEVLKKCLTFCINYNLKPSDLVSSWEVYYLNRQLDESTVKDDEMDGF--MLHLQNEQK 75
D+ E++ + L DL WE + R+ + + +D F L LQ E++
Sbjct: 16 DKPEIITALENLTKLHALSVEDLYIKWEQFSNQRRQTHTDLTSKNIDEFKQFLQLQMEKR 75
Query: 76 EAIIKEEPSLHIYSSKDV 93
I ++ + K V
Sbjct: 76 ANQISSSSKVNTSTKKPV 93
Score = 42 (19.8 bits), Expect = 1.1e-27, Sum P(3) = 1.1e-27
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 49 LNRQLDE-STVKDDEMDGFMLHLQNEQK 75
+ + L E S V DD+++ F +QN K
Sbjct: 250 MRQNLQEASDVLDDQIESFTKIIQNHYK 277
>ASPGD|ASPL0000002116 [details] [associations]
symbol:AN10855 species:162425 "Emericella nidulans"
[GO:0005635 "nuclear envelope" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016233
"telomere capping" evidence=IEA] [GO:0006270 "DNA replication
initiation" evidence=IEA] InterPro:IPR007185 Pfam:PF04042
GO:GO:0003677 GO:GO:0006260 EMBL:BN001301 GO:GO:0003887
InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 OMA:FFPGQIV EnsemblFungi:CADANIAT00007654
Uniprot:C8V2N1
Length = 682
Score = 338 (124.0 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 126/431 (29%), Positives = 195/431 (45%)
Query: 203 GCRFMYDRTEDRFNALENRIRKHANALVSSGLYEEPTDPTVASQRT--LFAVGMICCDG- 259
G + M R + L++RI + E+ T + A Q T + AVG I D
Sbjct: 242 GYKPMAMRLSEASEILDDRIDEFMTIFEKMYEKEDVTFGSAAVQSTNEIVAVGRIASDSP 301
Query: 260 DGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASKLVD 319
+G LN S++L++S G+RV L++ + + FPGQ+V + G N SG+ +++
Sbjct: 302 EGKLNPASLVLETSRRSGAGRRVPLNVDSIPSVNFFPGQIVALLGINASGNYFSVKEVLP 361
Query: 320 QIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEEISMIIAAGPFTTTDNLYFEPLKELI 379
PL AV V P+++ ++ S P ++++IA GP+T DNL FEPLKE+
Sbjct: 362 P-PLLPPAVSSV-PTIESTNERLSEGG---SSP--LNVMIACGPYTADDNLDFEPLKEIC 414
Query: 380 SYAKRKQPQLLILLGPFVDSEHPQIKKGTTD--SSFDE-------IFHLEILRRLQDYVE 430
A LILLGPF+D EHP + G + S D +F I LQ
Sbjct: 415 HKAAEGYADGLILLGPFLDLEHPLLASGDFELPESIDPDTATLTTVFKHYISTPLQQLAA 474
Query: 431 YMGSEVRAILVPSIRDANHDFVLXXXXXXXXXXXXXXXXTSL-TNPGTFEANQIKVGCCT 489
+ S + LVPS+RDA V + +NP TF N+ +G C+
Sbjct: 475 AVPS-ITIALVPSVRDAVSKHVSWPQEQLPKKELGLPKQARMVSNPVTFSLNETVIGMCS 533
Query: 490 VDVLKQLSGEE-MSRCSKDGTSNDRMEIYSLD----ISLMGXXXXXXXXXXXXEG----- 539
DVL +L EE + K+G R+ Y ++ + + EG
Sbjct: 534 HDVLYELRREEALHGKPKEGNLLTRLVKYLIEQRHFLPIFPPSSRDALPRPGFEGGLATG 593
Query: 540 IPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGE 599
LD S ++ + PDI+I+PS + F+KV+ + +NPG L+K
Sbjct: 594 AALDVSYSKLGEWWNVRPDILIVPSMLPPFVKVVD-----------SILTINPGTLSKRR 642
Query: 600 GSGTFAEIYYH 610
+GTFA++ H
Sbjct: 643 AAGTFAQMAIH 653
>UNIPROTKB|F1RQV4 [details] [associations]
symbol:POLA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0000060 "protein
import into nucleus, translocation" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR007185 Pfam:PF04042
GO:GO:0005737 GO:GO:0003677 GO:GO:0006260 GO:GO:0000060
GO:GO:0003887 InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 GeneTree:ENSGT00390000016784 GO:GO:0005658
OMA:QVGGTFG EMBL:CU856029 Ensembl:ENSSSCT00000014207 Uniprot:F1RQV4
Length = 598
Score = 246 (91.7 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 70/246 (28%), Positives = 118/246 (47%)
Query: 353 EEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSS 412
E+I +++A GP+TT+D++ FEPL +LI+ R +P + IL GPF+D++H Q++ S
Sbjct: 339 EQIMVLVACGPYTTSDSIAFEPLLDLITVINRDRPDVCILFGPFLDAKHEQVESCLLTSP 398
Query: 413 FDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLXX--XXXXXXXXXXXXXXT 470
F+++F + LR + + GS + + VPS+RD + + V
Sbjct: 399 FEDVFK-QCLRTIIEGTRSSGSHL--VFVPSLRDVHREPVYPQPPFSCSDLPREDKKRVQ 455
Query: 471 SLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRMEIYSLDISLMGXXXXX 530
+ P T N + G + D+L + EE+S S GTS DR +S + +
Sbjct: 456 FVPEPCTLSVNGMIFGLTSTDLLFHMGAEEIS--SSSGTS-DR---FSRILKHILTQRSY 509
Query: 531 XXXXXXXEGIPLDFSLAQEALTISTIPDIIILPSDMKYFIK-VLSLGGRNEGEEQKKCVC 589
E + +D+ + PD+ + PS+++YF+K +L N G K V
Sbjct: 510 YPLYPPQEDVAIDYEHFYAHAQLPVTPDVFVAPSELRYFVKDILGCICVNPGRLTKGQVG 569
Query: 590 VNPGRL 595
GRL
Sbjct: 570 GTFGRL 575
Score = 222 (83.2 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 75/220 (34%), Positives = 106/220 (48%)
Query: 192 SLMVHGSGPEP--GC-RFMYDRTEDRFNALENRIRKHANALVSSGLYEEPTDPTVASQRT 248
SL V G PEP G + M+ + D L +I + + L E T V +Q
Sbjct: 193 SLKVLGC-PEPLTGSYKSMFQKLSDIREVLTCKIEELGSELKEHYKIEAFTPVLVPAQEP 251
Query: 249 LFAVGMICCDGDGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPS 308
+ +G I CD +G LN KSV+L+ EHS G ++ +DL +L E+SLFPGQVV +EG N +
Sbjct: 252 VTLLGQIGCDSNGKLNHKSVILEGDREHSSGAQIPVDLSELKEYSLFPGQVVVMEGINTT 311
Query: 309 GHCLIASKLVDQIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEEISMIIAAGPFT--- 365
G L+A++L + +PLP PS + D E +V P S IA P
Sbjct: 312 GRKLVATRLYEGVPLPFH-----QPSEEDG-DSEQIMVLVACGPYTTSDSIAFEPLLDLI 365
Query: 366 TTDN-------LYFEPLKELISYAKRKQPQLLILLGPFVD 398
T N + F P + AK +Q + +L PF D
Sbjct: 366 TVINRDRPDVCILFGPFLD----AKHEQVESCLLTSPFED 401
Score = 128 (50.1 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 26/76 (34%), Positives = 40/76 (52%)
Query: 538 EGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAK 597
E + +D+ + PD+ + PS+++YF+K + LG C+CVNPGRL K
Sbjct: 517 EDVAIDYEHFYAHAQLPVTPDVFVAPSELRYFVKDI-LG----------CICVNPGRLTK 565
Query: 598 GEGSGTFAEIYYHGSP 613
G+ GTF +Y P
Sbjct: 566 GQVGGTFGRLYLRRQP 581
>UNIPROTKB|H0YDR7 [details] [associations]
symbol:POLA2 "DNA polymerase alpha subunit B" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR007185 Pfam:PF04042
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 HGNC:HGNC:30073
ChiTaRS:POLA2 EMBL:AP000944 Ensembl:ENST00000525924 Uniprot:H0YDR7
Length = 261
Score = 246 (91.7 bits), Expect = 4.9e-20, P = 4.9e-20
Identities = 62/223 (27%), Positives = 112/223 (50%)
Query: 353 EEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSS 412
E+ +++A GP+TT+D++ ++PL +LI+ +P + IL GPF+D++H Q++ S
Sbjct: 8 EQSMVLVACGPYTTSDSITYDPLLDLIAVINHDRPDVCILFGPFLDAKHEQVENCLLTSP 67
Query: 413 FDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLXX--XXXXXXXXXXXXXXT 470
F++IF + LR + + GS + + VPS+RD +H+ V
Sbjct: 68 FEDIFK-QCLRTIIEGTRSSGSHL--VFVPSLRDVHHEPVYPQPPFSYSDLSREDKKQVQ 124
Query: 471 SLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRMEIYSLDISLMGXXXXX 530
++ P + N + G + D+L L EE+S S GTS DR +S + +
Sbjct: 125 FVSEPCSLSINGVIFGLTSTDLLFHLGAEEIS--SSSGTS-DR---FSRILKHILTQRSY 178
Query: 531 XXXXXXXEGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKVL 573
E + +D+ + PD++I+PS+++YF+K L
Sbjct: 179 YPLYPPQEDMAIDYESFYVYAQLPVTPDVLIIPSELRYFVKFL 221
>CGD|CAL0004305 [details] [associations]
symbol:orf19.2796 species:5476 "Candida albicans" [GO:0005635
"nuclear envelope" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0016233 "telomere capping" evidence=IEA]
[GO:0006270 "DNA replication initiation" evidence=IEA]
InterPro:IPR007185 Pfam:PF04042 CGD:CAL0004305 GO:GO:0003677
GO:GO:0006260 GO:GO:0003887 eggNOG:COG5214 KO:K02321
InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 EMBL:AACQ01000185 RefSeq:XP_711738.1
STRING:Q59PU7 GeneID:3646666 KEGG:cal:CaO19.2796 Uniprot:Q59PU7
Length = 664
Score = 227 (85.0 bits), Expect = 8.2e-18, Sum P(3) = 8.2e-18
Identities = 76/289 (26%), Positives = 135/289 (46%)
Query: 240 DPTVASQRTLFAVGMICCDGDGH----LNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLF 295
+P +++Q + G I D + LN S+ L++S GQR+ LDL L +S F
Sbjct: 242 NPCMSTQSDILCCGRIVPDNPLYDKEILNSTSLFLETSRISGIGQRIPLDLSNLSNYSFF 301
Query: 296 PGQVVGIEGSNPSGHCLIASKLVDQIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEEI 355
PGQ+V ++G NPSG I + +PLP V S +E+ + + +
Sbjct: 302 PGQIVVLKGKNPSGKSFIVEQ---NMPLP-QLGAPVTSS------EELKEFQTLQNNQGL 351
Query: 356 SMIIAAGPFTTTDNLYFEPLKELISYAKRK-QPQLLILLGPFVDSEHPQIKKGT----TD 410
++IA+GPF+ ++ L ++ L +L+ K PQ++IL GPF+D + ++ G +D
Sbjct: 352 KVLIASGPFSNSNKLNYDKLDKLVDLINTKILPQVVILNGPFLDIGNKVVESGEIIIDSD 411
Query: 411 SSFDEIFHLEILRR--LQDYVEYMGSEVRAILVPSIRDA--NHDFVLXXXXXXXXXXXXX 466
S + L+ L + + ++ + S+++ IL P++RD H
Sbjct: 412 QSQPQPKTLDDLFKAIVTPVLKKIDSKIQVILYPNLRDTCIKHCSYPQDSFDRKKLGLPK 471
Query: 467 XXXTSLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRME 515
NP F N++ +G +D+ K L ++ + SN+R E
Sbjct: 472 NFKV-FPNPSGFSINEVLIGNSNLDIFKDL--RDIYKEDTAIISNNRFE 517
Score = 72 (30.4 bits), Expect = 8.2e-18, Sum P(3) = 8.2e-18
Identities = 11/19 (57%), Positives = 18/19 (94%)
Query: 555 TIPDIIILPSDMKYFIKVL 573
++PD++ILPS++KYF KV+
Sbjct: 580 SLPDVLILPSELKYFAKVI 598
Score = 38 (18.4 bits), Expect = 8.2e-18, Sum P(3) = 8.2e-18
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 53 LDESTVKDDEMDGFMLHLQNEQKEA 77
L+ + V DD++D + Q++ K A
Sbjct: 212 LESADVLDDQIDRMISLYQDQNKTA 236
>FB|FBgn0005696 [details] [associations]
symbol:DNApol-alpha73 "DNA polymerase alpha 73kD"
species:7227 "Drosophila melanogaster" [GO:0006261 "DNA-dependent
DNA replication" evidence=ISS] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007185 Pfam:PF04042 EMBL:AE014297 GO:GO:0005635
GO:GO:0003677 GO:GO:0006270 GO:GO:0003887 eggNOG:COG5214 KO:K02321
InterPro:IPR016722 PIRSF:PIRSF018300 GeneTree:ENSGT00390000016784
EMBL:AY060943 PIR:S40962 RefSeq:NP_733206.3
ProteinModelPortal:Q9VB62 SMR:Q9VB62 IntAct:Q9VB62 MINT:MINT-282285
STRING:Q9VB62 PaxDb:Q9VB62 EnsemblMetazoa:FBtr0114543 GeneID:43278
KEGG:dme:Dmel_CG5923 CTD:43278 FlyBase:FBgn0005696
InParanoid:Q9VB62 OMA:EQWMAFS OrthoDB:EOG470RZS PhylomeDB:Q9VB62
GenomeRNAi:43278 NextBio:833113 Bgee:Q9VB62 GermOnline:CG5923
GO:GO:0005658 Uniprot:Q9VB62
Length = 609
Score = 200 (75.5 bits), Expect = 7.2e-16, Sum P(2) = 7.2e-16
Identities = 61/248 (24%), Positives = 116/248 (46%)
Query: 333 PSMKQALDQEIHST--VVISRP----EEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQ 386
P K + +EIH+ + + P E+ ++A+GPFT + +L++EPL +L+ Y K +
Sbjct: 332 PRGKTFMVEEIHTERKLTPATPLQIDRELQFVVASGPFTDSTDLFYEPLHDLLKYLKDHR 391
Query: 387 PQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRD 446
P +L+L GPF+D++H + G +FD F + + +E +GS ++V S +D
Sbjct: 392 PDVLVLTGPFLDADHKMV--GELAETFDTFFE----KMIGGIMESIGSHTAVLVVTSQKD 445
Query: 447 ANHDFVLXXXXXXXXXXXXXXXXTSLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSK 506
A V L +P + + +G + DV+ L E +
Sbjct: 446 AMALSVYPTPPPALRRTYPNLYM--LPDPSLVDLDGFTLGVTSTDVVDHLLSHEFAV--- 500
Query: 507 DGTSNDRMEIYSLDISLMGXXXXXXXXXXXXEGIPLDFSLAQEALTISTIPDIIILPSDM 566
+ +RM +++ L E + D LA + + +P+++ILPSD
Sbjct: 501 --NAGERMH-RAIN-HLFHQGSFYPLYPPADEDMAYDSQLALKYAQLKQLPNVLILPSDQ 556
Query: 567 KYFIKVLS 574
++FI++++
Sbjct: 557 RHFIRLVN 564
Score = 108 (43.1 bits), Expect = 1.6e-11, Sum P(3) = 1.6e-11
Identities = 54/197 (27%), Positives = 78/197 (39%)
Query: 206 FMYDRTEDRFNALENRIRKHANALVSSGLYEE--------PTDPTVA-SQRTLFAVGMIC 256
+M D DR + L R + ALV L + P D V S L AVGMI
Sbjct: 219 YMNDLLTDRCHNLRVRFNQTGPALVDKKLGQAGAAECIWYPQDRQVLQSAGGLHAVGMIH 278
Query: 257 CDGDGHLNDKSV---LLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLI 313
+ DG L+ S +L VE + L+ ++ S+FPGQVV +G P G +
Sbjct: 279 SEDDGPLDAHSAFMAVLDDDVEDEMDPTLTLNFSRVKSASIFPGQVVLAKGFIPRGKTFM 338
Query: 314 AS------KLVDQIPLPVDA----VVDVHPSMKQALD---QEIHSTVVISRPEEISMIIA 360
KL PL +D VV P + D + +H + + +++
Sbjct: 339 VEEIHTERKLTPATPLQIDRELQFVVASGP-FTDSTDLFYEPLHDLLKYLKDHRPDVLVL 397
Query: 361 AGPFTTTDNLYFEPLKE 377
GPF D+ L E
Sbjct: 398 TGPFLDADHKMVGELAE 414
Score = 98 (39.6 bits), Expect = 1.6e-11, Sum P(3) = 1.6e-11
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 538 EGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAK 597
E + D LA + + +P+++ILPSD ++FI+++ N+ C+ +NPGR+A
Sbjct: 528 EDMAYDSQLALKYAQLKQLPNVLILPSDQRHFIRLV-----ND------CLVINPGRVAD 576
Query: 598 GEGSGTFA 605
+G GTFA
Sbjct: 577 KKG-GTFA 583
Score = 78 (32.5 bits), Expect = 7.2e-16, Sum P(2) = 7.2e-16
Identities = 52/249 (20%), Positives = 97/249 (38%)
Query: 1 MEEEIKAEFQKNGFNFVDEGEVLKKCLTFCINYNLKPS-DLVSSWEVYYLNR-QLDESTV 58
MEEE+K +F + G D VL +C I YN+ + + V W + L+ Q ++ +
Sbjct: 1 MEEELKQQFDEMGVEPADA--VLGRCAELAITYNIHDATEFVEQWMAFSLSHLQGEDPAI 58
Query: 59 KD-DEMDGFMLHLQNEQK--EAIIKEEPSLHIYSSKDVDMILND---EDENIAEDILG-T 111
++ + + +L L+ ++ +A ++ S S +D + ED+ + +D + +
Sbjct: 59 ENLGDFERKVLQLRKDKAGYKATGQKAKSYGSPSVQDTSSLATYGVMEDDPMLDDYVSES 118
Query: 112 PPDNLKLYSDAL--DSTYKANANGYSSDKPSKLVTPFGRRTEKLVVKFN-INNLPNTENG 168
D+ L++ S AN G + P+ +R L N + P
Sbjct: 119 AVDSSALHTPKAKKQSDRTANLKGAALFSPASYTPQSAKRKAGLETPSNSVAGKPGDIVD 178
Query: 169 CIEHDDENTEDDIIKRIK-TGKKCSLMVHGSGPEP--GCRFMYDRTEDRFNALENRIRKH 225
H +++ T ++H P +M D DR + L R +
Sbjct: 179 TFGHPKLLAGSSWQSQMEHTVPVTQKLLHNDAPLTIANLGYMNDLLTDRCHNLRVRFNQT 238
Query: 226 ANALVSSGL 234
ALV L
Sbjct: 239 GPALVDKKL 247
>DICTYBASE|DDB_G0282731 [details] [associations]
symbol:polA2 "DNA polymerase alpha subunit B"
species:44689 "Dictyostelium discoideum" [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR007185 Pfam:PF04042
dictyBase:DDB_G0282731 GO:GO:0005634 EMBL:AAFI02000047
GenomeReviews:CM000152_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0003887
eggNOG:COG5214 KO:K02321 RefSeq:XP_640231.2 STRING:Q54S08
EnsemblProtists:DDB0304676 GeneID:8623771 KEGG:ddi:DDB_G0282731
InParanoid:Q54S08 OMA:ISMRYLQ Uniprot:Q54S08
Length = 623
Score = 157 (60.3 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 31/100 (31%), Positives = 62/100 (62%)
Query: 354 EISMIIAAGPFTTTDNLY-FEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSS 412
+I+++IA+GPF + + PL +L + K+P +L L+GPF+D + IKK + +
Sbjct: 369 DINVMIASGPFDLQKSTPDYTPLDDLCNVVSNKKPHILFLMGPFIDESNVHIKKYS--ET 426
Query: 413 FDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFV 452
F E+F+ ++++L D + S + ++VPS+ D +H+++
Sbjct: 427 FSELFN-NLMKKLNDNIP---STTKVLIVPSLNDVDHEYI 462
Score = 68 (29.0 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 44/162 (27%), Positives = 65/162 (40%)
Query: 172 HDDENTEDDIIKRIKTGKKCSLMVHGSGPEPGCRFMYDRTEDRFNALENRIRKHANALVS 231
+++E + D+ R K K C L G+G E Y R + LE R K V
Sbjct: 209 NNNEELKTDLSLREK--KSCDLK--GAGEE-----FYPIKYHR-DTLEQRT-KILKESVQ 257
Query: 232 SGLYEEPTDPTVASQRTLF-AVGMICC-DGDGHLNDKSVLL--QSSVEHSGGQRVRLDLH 287
S Y P ++ +VG + D + L+ + LL + SGG +
Sbjct: 258 SNNYTFPVSLDCQDDESIVRSVGRVWMYDQETILSKRFYLLGNERDSSSSGGSSGSASIF 317
Query: 288 KLG----EFSLFPGQVVGIEGSNPSG-HCLIASKLVDQIPLP 324
L ++S+F GQVV E +G H +KL PLP
Sbjct: 318 SLENNIPDYSMFSGQVVMAESKKIAGSHFYYTNKLYTPNPLP 359
Score = 65 (27.9 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 30/139 (21%), Positives = 59/139 (42%)
Query: 11 KNGFNFVDEGEVLKKCLTFCINYNLKPSDLVSSWEVYYLNRQLDESTVKD-DEMDGFM-- 67
KN F ++ E+L+ + L S + W + L +++ E K D F+
Sbjct: 9 KNSFGGFNDEELLR-VQKIIEDLELTESIVSKEWVTFALQKKIAEDYSKHLDPFKVFLKK 67
Query: 68 ----LHLQN--EQKEAIIKEEPSLHIYSSKDVDMILNDEDENIAEDILGTPPDNLKLYSD 121
L +Q EQ + + +E+P + + + +++ I+ D D + E + D D
Sbjct: 68 NIKKLKVQKTTEQIKEVAEEDPKM--FENVEIEDIIFDTDSLVDESEIPKIKDEPSSSVD 125
Query: 122 ALDSTYKANANGYSSDKPS 140
+ K N N +++ PS
Sbjct: 126 VSTARNKNNHNNNNNNNPS 144
>WB|WBGene00001002 [details] [associations]
symbol:div-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] InterPro:IPR007185 Pfam:PF04042 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0040007 GO:GO:0002119
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 EMBL:Z31590
eggNOG:COG5214 KO:K02321 InterPro:IPR016722 InterPro:IPR013627
Pfam:PF08418 PIRSF:PIRSF018300 EMBL:AL032660 PIR:T27359
RefSeq:NP_499268.1 ProteinModelPortal:Q21625 SMR:Q21625
IntAct:Q21625 STRING:Q21625 PaxDb:Q21625 EnsemblMetazoa:R01H10.1
GeneID:176439 KEGG:cel:CELE_R01H10.1 UCSC:R01H10.1 CTD:176439
WormBase:R01H10.1 GeneTree:ENSGT00390000016784 HOGENOM:HOG000015821
InParanoid:Q21625 OMA:KGPTGNY NextBio:892584 Uniprot:Q21625
Length = 581
Score = 141 (54.7 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 59/260 (22%), Positives = 110/260 (42%)
Query: 360 AAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHL 419
A GP+T TDN +E L EL+ ++P +L+L GPFVD ++ + K T + ++D +
Sbjct: 326 ACGPYTATDNCGYEHLCELLDKVVAEKPDILMLAGPFVDKKNTFLNKPTFNITYDNLLE- 384
Query: 420 EILRRLQDYVEYMGSEVRAILVPSI-RD--ANHDFVLXXXXXXXXXXXXXXXXTSLTNPG 476
++L ++++ + +G++ + I+ P+ RD F + +P
Sbjct: 385 DLLLKVKETL--VGTKTQVIIQPNASRDLCVPPVFPSAPFQQNRKLDKIKKELIFVADPC 442
Query: 477 TFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRMEIYSLDISLMGXXXXXXXXXXX 536
F + ++V + + ++ LS E R S + + DR + L L+
Sbjct: 443 IFRISGVEVAMTSSEPIQALSNTEFHR-SANQENIDR--VARLSSHLL--TQQCMYPLEP 497
Query: 537 XEGIPLDFSLAQEALTISTIPDIIILPSDM---------KYFIKVLSLGGRNEGEEQKKC 587
E +P + I + P I+ P+ + FI +L G K
Sbjct: 498 TE-VPASMGDLLDVCCIGSTPHIVFAPTKLAPSAKCVNGSVFINSSTLAKGPTGNYAKMS 556
Query: 588 VCVNPGRLAKGEGSGTFAEI 607
+ +N G L GE +A+I
Sbjct: 557 INLNAGELMPGETVADYAQI 576
Score = 121 (47.7 bits), Expect = 0.00060, P = 0.00060
Identities = 73/307 (23%), Positives = 125/307 (40%)
Query: 108 ILGTPPDNLKLYSDALDSTYKANANGYSSDKPSKLVTPF-GR-RTEKLVVKFNINNLPNT 165
IL PD+++ S L ++ A G+ D +PF G EK + + + +++ T
Sbjct: 104 ILSGDPDDIEKPSHHLTNSAIAKLEGHFLD-----FSPFPGSPANEKFLKRADPSHVVTT 158
Query: 166 ENGCIEHDD----ENTEDDIIKRIKTGKKCSLMVHGSGPEPGCRFMYDRTEDRFNALENR 221
G D DD I+ I K ++G G + + + R + +R
Sbjct: 159 IRGKKYQDKGLKGSTKSDDTIRIIS---KTPSTLYG-GDKSS--MVIEAKAQRMADIAHR 212
Query: 222 IRKHANALVSSGLYEEPTDPTVASQRTLFAVGMICCDG--DGH-LNDKSVLLQSSVEHSG 278
I+K +V G +P++ S ++ G + D D + SV L +
Sbjct: 213 IQKSFEEIVDWG------NPSIPSVDVVYTYGQVIHDETKDNEKFGEHSVALM--INDED 264
Query: 279 GQRVRLDLHKLGE-FSLFPGQVVGIEGSNPSGHCLIASKLVDQIPLPVDAV-VDVHPSM- 335
G +R+D K+ E +LFPGQ++ + G+N +G L K+ LPV+ V D +
Sbjct: 265 GTMIRMDFSKMTEDITLFPGQIIAVRGTNETGEELQVDKIFQPAALPVNPVETDTTKEIW 324
Query: 336 -----KQALDQ-------EIHSTVVISRPEEISMIIAAGPFTTTDNLYFEPLKELISYAK 383
A D E+ VV +P+ +++ AGPF N + I+Y
Sbjct: 325 FACGPYTATDNCGYEHLCELLDKVVAEKPD---ILMLAGPFVDKKNTFLNKPTFNITYDN 381
Query: 384 RKQPQLL 390
+ LL
Sbjct: 382 LLEDLLL 388
>GENEDB_PFALCIPARUM|PF14_0602 [details] [associations]
symbol:PF14_0602 "DNA polymerase alpha subunit,
putative" species:5833 "Plasmodium falciparum" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0005658
"alpha DNA polymerase:primase complex" evidence=ISS] [GO:0006269
"DNA replication, synthesis of RNA primer" evidence=ISS]
InterPro:IPR007185 Pfam:PF04042 GO:GO:0003677 EMBL:AE014187
GO:GO:0003887 GO:GO:0006269 KO:K02321 InterPro:IPR016722
PIRSF:PIRSF018300 GO:GO:0005658 RefSeq:XP_001348776.1
ProteinModelPortal:Q8IKK3 EnsemblProtists:PF14_0602:mRNA
GeneID:812184 KEGG:pfa:PF14_0602 EuPathDB:PlasmoDB:PF3D7_1463300
HOGENOM:HOG000281942 OMA:RICADEI ProtClustDB:CLSZ2433173
Uniprot:Q8IKK3
Length = 539
Score = 135 (52.6 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 54/272 (19%), Positives = 122/272 (44%)
Query: 250 FAVGMICCDGDGHLNDKSVLLQSSVEHSGGQRVRL-DLHKLGEFSLFPGQVVGIEGSNPS 308
+ G I + + ++++ +++L+ +++ + G + +L +L + F GQ++ I+G
Sbjct: 158 YIFGRIYTENEMNISESNIILEGNMKWNNGDKAQLLNLTDMRNICFFLGQILAIKGKKEI 217
Query: 309 GHCLI---ASKLVDQIPLPVDAVVDV-----HPSMKQAL-DQEIHSTVV-ISRPEEISMI 358
I S + +P + +D H + K+ D +IH ++ + E I ++
Sbjct: 218 NQFSIKYYVSNVYAGLPSHLKVQIDKEFVLKHFNTKEIEEDSKIHENILHLYNNENIHIM 277
Query: 359 IAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPF--VDSEHPQIKK-GTTDSSFDE 415
I G + DN Y E L + K P ++++ GPF + + I+K G + ++
Sbjct: 278 ICNG-YIYNDNNYSENLDNFLKVVNEKLPHVVLIFGPFLYIRNFSETIQKIGDINIIYEN 336
Query: 416 IFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLXXXXXXXXXXXXXXXXTS-LTN 474
+F +I + ++ E + + ++PSI D+ + + L L+N
Sbjct: 337 LFK-KITKFAKN--EIL-EKTHFFIIPSIYDSINIYPLPQPPFYYENSNINSPNVHFLSN 392
Query: 475 PGTFEANQIKVGCCTVDVLKQLSGEEMSRCSK 506
P N++K+ + D++ L+ + R S+
Sbjct: 393 PSYIYINELKIALTSCDIVYNLTRNLLCRPSE 424
>UNIPROTKB|Q8IKK3 [details] [associations]
symbol:PF14_0602 "DNA polymerase alpha subunit, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=ISS] [GO:0006269 "DNA
replication, synthesis of RNA primer" evidence=ISS]
InterPro:IPR007185 Pfam:PF04042 GO:GO:0003677 EMBL:AE014187
GO:GO:0003887 GO:GO:0006269 KO:K02321 InterPro:IPR016722
PIRSF:PIRSF018300 GO:GO:0005658 RefSeq:XP_001348776.1
ProteinModelPortal:Q8IKK3 EnsemblProtists:PF14_0602:mRNA
GeneID:812184 KEGG:pfa:PF14_0602 EuPathDB:PlasmoDB:PF3D7_1463300
HOGENOM:HOG000281942 OMA:RICADEI ProtClustDB:CLSZ2433173
Uniprot:Q8IKK3
Length = 539
Score = 135 (52.6 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 54/272 (19%), Positives = 122/272 (44%)
Query: 250 FAVGMICCDGDGHLNDKSVLLQSSVEHSGGQRVRL-DLHKLGEFSLFPGQVVGIEGSNPS 308
+ G I + + ++++ +++L+ +++ + G + +L +L + F GQ++ I+G
Sbjct: 158 YIFGRIYTENEMNISESNIILEGNMKWNNGDKAQLLNLTDMRNICFFLGQILAIKGKKEI 217
Query: 309 GHCLI---ASKLVDQIPLPVDAVVDV-----HPSMKQAL-DQEIHSTVV-ISRPEEISMI 358
I S + +P + +D H + K+ D +IH ++ + E I ++
Sbjct: 218 NQFSIKYYVSNVYAGLPSHLKVQIDKEFVLKHFNTKEIEEDSKIHENILHLYNNENIHIM 277
Query: 359 IAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPF--VDSEHPQIKK-GTTDSSFDE 415
I G + DN Y E L + K P ++++ GPF + + I+K G + ++
Sbjct: 278 ICNG-YIYNDNNYSENLDNFLKVVNEKLPHVVLIFGPFLYIRNFSETIQKIGDINIIYEN 336
Query: 416 IFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLXXXXXXXXXXXXXXXXTS-LTN 474
+F +I + ++ E + + ++PSI D+ + + L L+N
Sbjct: 337 LFK-KITKFAKN--EIL-EKTHFFIIPSIYDSINIYPLPQPPFYYENSNINSPNVHFLSN 392
Query: 475 PGTFEANQIKVGCCTVDVLKQLSGEEMSRCSK 506
P N++K+ + D++ L+ + R S+
Sbjct: 393 PSYIYINELKIALTSCDIVYNLTRNLLCRPSE 424
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.135 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 623 595 0.00084 120 3 11 22 0.43 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 23
No. of states in DFA: 616 (65 KB)
Total size of DFA: 319 KB (2163 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 55.97u 0.15s 56.12t Elapsed: 00:00:03
Total cpu time: 55.98u 0.15s 56.13t Elapsed: 00:00:03
Start: Sat May 11 07:58:07 2013 End: Sat May 11 07:58:10 2013