BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006976
(623 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q14181|DPOA2_HUMAN DNA polymerase alpha subunit B OS=Homo sapiens GN=POLA2 PE=1 SV=2
Length = 598
Score = 223 bits (567), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 137/405 (33%), Positives = 219/405 (54%), Gaps = 41/405 (10%)
Query: 207 MYDRTEDRFNALENRIRKHANALVSSGLYEEPTDPTVASQRTLFAVGMICCDGDGHLNDK 266
M+ + D L +I + + L E T +Q + +G I CD +G LN+K
Sbjct: 209 MFQKLPDIREVLTCKIEELGSELKEHYKIEAFTPLLAPAQEPVTLLGQIGCDSNGKLNNK 268
Query: 267 SVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASKLVDQIPLPVD 326
SV+L+ EHS G ++ +DL +L E+SLFPGQVV +EG N +G L+A+KL + +PLP
Sbjct: 269 SVILEGDREHSSGAQIPVDLSELKEYSLFPGQVVIMEGINTTGRKLVATKLYEGVPLPFY 328
Query: 327 AVVDVHPSMKQALDQEIHSTVVISRPEEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQ 386
+ +Q++ +++A GP+TT+D++ ++PL +LI+ +
Sbjct: 329 QPTEEDADFEQSM-----------------VLVACGPYTTSDSITYDPLLDLIAVINHDR 371
Query: 387 PQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRD 446
P + IL GPF+D++H Q++ S F++IF + LR + + GS + + VPS+RD
Sbjct: 372 PDVCILFGPFLDAKHEQVENCLLTSPFEDIFK-QCLRTIIEGTRSSGSHL--VFVPSLRD 428
Query: 447 ANHDFVLPQPPF---DIQPPDIIHQITSLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSR 503
+H+ V PQPPF D+ D Q+ ++ P + N + G + D+L L EE+S
Sbjct: 429 VHHEPVYPQPPFSYSDLSRED-KKQVQFVSEPCSLSINGVIFGLTSTDLLFHLGAEEIS- 486
Query: 504 CSKDGTSNDRMEIYSLDISLMGPAFFFYPLYPPAEGIPLDFSLAQEALTISTIPDIIILP 563
S GTS+ I ++ +YPLYPP E + +D+ + PD++I+P
Sbjct: 487 -SSSGTSDRFSRILKHILTQRS----YYPLYPPQEDMAIDYESFYVYAQLPVTPDVLIIP 541
Query: 564 SDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEGSGTFAEIY 608
S+++YF+K + LG CVCVNPGRL KG+ GTFA +Y
Sbjct: 542 SELRYFVKDV-LG----------CVCVNPGRLTKGQVGGTFARLY 575
>sp|P33611|DPOA2_MOUSE DNA polymerase alpha subunit B OS=Mus musculus GN=Pola2 PE=1 SV=2
Length = 600
Score = 221 bits (564), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 140/424 (33%), Positives = 224/424 (52%), Gaps = 42/424 (9%)
Query: 200 PEP---GCRFMYDRTEDRFNALENRIRKHANALVSSGLYEEPTDPTVASQRTLFAVGMIC 256
PEP + M+ + L ++I + + L E T V +Q + +G I
Sbjct: 199 PEPLTGSYKAMFQQLMGVREVLTSKIEELGSELKEHHKIEAFTPLLVPAQEPVILLGQIG 258
Query: 257 CDGDGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASK 316
CD +G LN KSV+L+ EHS G ++ +DL +L E+SLFPGQVV +EG N +G L A+K
Sbjct: 259 CDSNGKLNSKSVILEGDQEHSYGAQIPVDLSELKEYSLFPGQVVIMEGFNTTGRRLTATK 318
Query: 317 LVDQIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEEISMIIAAGPFTTTDNLYFEPLK 376
L + +PLP Q ++E S E+ +++A GP+TT+D++ ++PL
Sbjct: 319 LYEGVPLP----------FYQPTEEEGAS-------EQTMVVVACGPYTTSDSITYDPLL 361
Query: 377 ELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEV 436
+LI+ R QP + IL GPF+D++H Q++ S F+++F + LR + + GS +
Sbjct: 362 DLIAIINRDQPDVCILFGPFLDAKHEQVENCKLTSPFEDVFK-QCLRTVIEGTRSSGSHL 420
Query: 437 RAILVPSIRDANHDFVLPQPPFDIQ--PPDIIHQITSLTNPGTFEANQIKVGCCTVDVLK 494
+ VPS+RD +H+ V PQPPF + ++ ++ P + N + G + D+L
Sbjct: 421 --VFVPSLRDVHHEPVYPQPPFTFSELSREDKKRVQFVSEPCSLSINGVMFGLTSTDLLF 478
Query: 495 QLSGEEMSRCSKDGTSNDRMEIYSLDISLMGPAFFFYPLYPPAEGIPLDFSLAQEALTIS 554
+ EE+ S GTS DR +S + + +YPLYPP E + +D+ +
Sbjct: 479 HIGAEEI--FSSSGTS-DR---FSRVLKHILTQRSYYPLYPPHEDMAIDYENFYTYAQLP 532
Query: 555 TIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEGSGTFAEIYYHGSPE 614
PD+ I+PS+++YF+K + CVCVNPGRL KG+ GTF +Y P+
Sbjct: 533 VTPDVFIVPSELRYFVKDIF-----------GCVCVNPGRLTKGQVGGTFGRLYLRRQPK 581
Query: 615 MMNA 618
M+
Sbjct: 582 AMDG 585
>sp|O89043|DPOA2_RAT DNA polymerase alpha subunit B OS=Rattus norvegicus GN=Pola2 PE=2
SV=2
Length = 600
Score = 219 bits (559), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 134/420 (31%), Positives = 217/420 (51%), Gaps = 42/420 (10%)
Query: 200 PEP---GCRFMYDRTEDRFNALENRIRKHANALVSSGLYEEPTDPTVASQRTLFAVGMIC 256
PEP + M+ + D L +I + + L E T V +Q + +G I
Sbjct: 199 PEPLTSSYKTMFQQLPDIREVLTCKIEELGSELKEHYKIEAFTPLLVPAQEPVILLGQIG 258
Query: 257 CDGDGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASK 316
CD +G LN KSV+L+ EHS G ++ +D+ +L ++SLFPGQVV +EG N +G L A+K
Sbjct: 259 CDSNGRLNSKSVILEGDREHSSGAQIPVDVSELKDYSLFPGQVVIMEGFNTTGRRLTATK 318
Query: 317 LVDQIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEEISMIIAAGPFTTTDNLYFEPLK 376
L + +PLP + +Q + +++A GP+TT+D++ ++PL
Sbjct: 319 LYEGVPLPFYQPTEEEGDFEQTM-----------------VLVACGPYTTSDSITYDPLL 361
Query: 377 ELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEV 436
+LIS +P + IL GPF+D++H Q++ S F++IF + LR + + GS +
Sbjct: 362 DLISTINHDRPDVCILFGPFLDAKHEQVENCKLTSPFEDIFK-QCLRTVIEGTRSSGSHL 420
Query: 437 RAILVPSIRDANHDFVLPQPPFDIQ--PPDIIHQITSLTNPGTFEANQIKVGCCTVDVLK 494
+ VPS+RD +H+ V PQPPF P + ++ ++ P N + G + D+L
Sbjct: 421 --VFVPSLRDVHHEPVYPQPPFTFSELPREDKKRVQFVSEPCNLSINGVMFGLTSTDLLF 478
Query: 495 QLSGEEMSRCSKDGTSNDRMEIYSLDISLMGPAFFFYPLYPPAEGIPLDFSLAQEALTIS 554
+ EE+ CS GTS+ I ++ +YPLYPP E + +D+ +
Sbjct: 479 HIGAEEI--CSSSGTSDRFSRILKHILTQRS----YYPLYPPHEDMAIDYENFYTYAQLP 532
Query: 555 TIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEGSGTFAEIYYHGSPE 614
PD+ I+PS+++YF+K + CVC+NPGRL KG+ GTF +Y P+
Sbjct: 533 VTPDVFIVPSELRYFVKDIF-----------GCVCMNPGRLTKGQVGGTFGRLYLRRQPK 581
>sp|Q58D13|DPOA2_BOVIN DNA polymerase alpha subunit B OS=Bos taurus GN=POLA2 PE=2 SV=1
Length = 604
Score = 201 bits (512), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 129/388 (33%), Positives = 210/388 (54%), Gaps = 36/388 (9%)
Query: 192 SLMVHGSGPEP---GCRFMYDRTEDRFNALENRIRKHANALVSSGLYEEPTDPTVASQRT 248
SL V G PEP ++M+ + D L +I + + L E V +Q
Sbjct: 194 SLKVLGH-PEPLTGSYKYMFQKLPDIREVLTCKIEELGSELKEHYKIEAFAPILVPAQEP 252
Query: 249 LFAVGMICCDGDGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPS 308
+ +G I CD +G LN KSV+L+ +EHS G ++ +DL +L E+SLFPGQVV +EG N +
Sbjct: 253 VTLLGQIGCDSNGKLNHKSVILEGDLEHSSGAQIPVDLSELKEYSLFPGQVVVMEGINTT 312
Query: 309 GHCLIASKLVDQIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEEISMIIAAGPFTTTD 368
G L+A++L + +PLP H ++ D E+ +++A GP+TT+D
Sbjct: 313 GRKLVATRLYEGVPLP------FHQPDEEDGDS-----------EQFMVLVACGPYTTSD 355
Query: 369 NLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDY 428
++ F+PL +LI+ R +P + IL GPF+D++H Q++ SSF+++F + LR + +
Sbjct: 356 SITFDPLLDLITIINRDRPDVCILFGPFLDAKHEQVESCLLTSSFEDVFK-QCLRTIIEG 414
Query: 429 VEYMGSEVRAILVPSIRDANHDFVLPQPPFDIQPPDIIHQ----ITSLTNPGTFEANQIK 484
GS + I+VPS+RD +H+ V PQPPF D++ + + ++ P T N +
Sbjct: 415 TRSSGSHL--IIVPSLRDVHHEPVYPQPPFSCS--DLLREDKKRVRLVSEPCTLSINGVI 470
Query: 485 VGCCTVDVLKQLSGEEMSRCSKDGTSNDRMEIYSLDISLMGPAFFFYPLYPPAEGIPLDF 544
G + D+L + EE+S S GTS+ I ++ +YPLYPP E + +D+
Sbjct: 471 FGLTSTDLLFHMGAEEIS--SSSGTSDRFSRILRHILTQRS----YYPLYPPQEDMAIDY 524
Query: 545 SLAQEALTISTIPDIIILPSDMKYFIKV 572
+ PD+ I PS+++YF+KV
Sbjct: 525 ENFYLYAQLPVTPDVFIAPSELRYFVKV 552
>sp|O74946|DPOA2_SCHPO DNA polymerase alpha subunit B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=pol12 PE=1 SV=1
Length = 574
Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 128/421 (30%), Positives = 195/421 (46%), Gaps = 54/421 (12%)
Query: 205 RFMYDRTEDRFNALENRI--------RKHANALVSSGLYEEPTDPTVASQRTLFAVGMIC 256
R MY + D L++RI RK+ +S P++ T + + +
Sbjct: 159 RIMYQKLYDSSEVLDDRIELFSALTCRKYN---ISDEDLANPSELTQEPVVVVGRIVVES 215
Query: 257 CDGDGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASK 316
+ G LN S+LL+SS G RVRL + L +S+FPGQ+V ++GSNPSG+ IA
Sbjct: 216 TNLGGRLNQNSILLESSRRLGAGVRVRLKVDDLPSYSIFPGQIVSVKGSNPSGNMFIAK- 274
Query: 317 LVDQIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEEISMIIAAGPFTTTDNLYFEPLK 376
+ + + QE + V + + IS+ IA+GP++ D+L F PLK
Sbjct: 275 ---------EILPIPPLPFPSSSKQEHATFVANTNNQPISIYIASGPWSLRDDLSFSPLK 325
Query: 377 ELISYAKRKQPQLLILLGPFVDSEHPQIK----KGTTDSSFDEIFHLEILRRLQDYVEYM 432
+ISY + L+IL GPF+D H I+ GT+ +S +E+F + L
Sbjct: 326 SMISYVNKNPVDLVILCGPFLDINHILIRTGNITGTSATSLEELFKERVTPILSQLT--- 382
Query: 433 GSEVRAILVPSIRDANHDF-VLPQPPFDIQPPDIIHQITSLTNPGTFEANQIKVGCCTVD 491
IL+P I DA D PQ F+ + NP F N + G T D
Sbjct: 383 ---CPCILIPHINDAASDHPAWPQDAFNRVALGLPSNFKCFPNPCMFSINDVVFGVSTND 439
Query: 492 VLKQLSGEEMSRCSKDGTSNDRMEIYSLDISLMGPAFFFYPLYPPA---EGIPLDFSLAQ 548
+L S EE+ R G R+ +S + FYPL+P + P + +A
Sbjct: 440 ILLHTSREELFRLPSHGNLFARL------VSHVLHQRHFYPLFPGGSLEKCNPSNLDIAH 493
Query: 549 EALT--ISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEGSGTFAE 606
L ++T+PDI+ILPSD++YF+K + + V +NPG+ KG GTFA+
Sbjct: 494 LKLGEFLNTMPDILILPSDLRYFVKNV-----------ENVVSLNPGKATKGINLGTFAK 542
Query: 607 I 607
+
Sbjct: 543 L 543
>sp|Q9VB62|DPOA2_DROME DNA polymerase alpha subunit B OS=Drosophila melanogaster
GN=DNApol-alpha73 PE=1 SV=2
Length = 609
Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 165/649 (25%), Positives = 265/649 (40%), Gaps = 106/649 (16%)
Query: 1 MEEEIKAEFQKNGFNFVDEGEVLKKCLTFCINYNLK-PSDLVSSWEVYYLNRQLDESTVK 59
MEEE+K +F + G D VL +C I YN+ ++ V W + L+ E
Sbjct: 1 MEEELKQQFDEMGVEPADA--VLGRCAELAITYNIHDATEFVEQWMAFSLSHLQGEDPAI 58
Query: 60 DDEMDGFMLHLQNEQKEA---------------IIKEEPSLHIYSSKDVDMILNDEDENI 104
++ D LQ + +A +++ SL Y + D +L+D
Sbjct: 59 ENLGDFERKVLQLRKDKAGYKATGQKAKSYGSPSVQDTSSLATYGVMEDDPMLDDYVSES 118
Query: 105 AEDILGTPPDNLKLYSDALDSTYKANANGYSSDKPSKLVTPFGRRTEKLVVKFN-INNLP 163
A D K SD AN G + P+ +R L N + P
Sbjct: 119 AVDSSALHTPKAKKQSD-----RTANLKGAALFSPASYTPQSAKRKAGLETPSNSVAGKP 173
Query: 164 NTENGCIEHDD----ENTEDDIIKRIKTGKKCSLMVHGSGPE--PGCRFMYDRTEDRFNA 217
H + + + + +K ++H P +M D DR +
Sbjct: 174 GDIVDTFGHPKLLAGSSWQSQMEHTVPVTQK---LLHNDAPLTIANLGYMNDLLTDRCHN 230
Query: 218 LENRIRKHANALVSSGLYEE--------PTDPTV-ASQRTLFAVGMICCDGDGHLNDKSV 268
L R + ALV L + P D V S L AVGMI + DG L+ S
Sbjct: 231 LRVRFNQTGPALVDKKLGQAGAAECIWYPQDRQVLQSAGGLHAVGMIHSEDDGPLDAHSA 290
Query: 269 ---LLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIAS------KLVD 319
+L VE + L+ ++ S+FPGQVV +G P G + KL
Sbjct: 291 FMAVLDDDVEDEMDPTLTLNFSRVKSASIFPGQVVLAKGFIPRGKTFMVEEIHTERKLTP 350
Query: 320 QIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEEISMIIAAGPFTTTDNLYFEPLKELI 379
PL +D E+ ++A+GPFT + +L++EPL +L+
Sbjct: 351 ATPLQID--------------------------RELQFVVASGPFTDSTDLFYEPLHDLL 384
Query: 380 SYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAI 439
Y K +P +L+L GPF+D++H + G +FD F + + +E +GS +
Sbjct: 385 KYLKDHRPDVLVLTGPFLDADHKMV--GELAETFDTFFE----KMIGGIMESIGSHTAVL 438
Query: 440 LVPSIRDANHDFVLPQPPFDIQPPDIIHQITSLTNPGTFEANQIKVGCCTVDVLKQLSGE 499
+V S +DA V P PP ++ + L +P + + +G + DV+ L
Sbjct: 439 VVTSQKDAMALSVYPTPPPALR--RTYPNLYMLPDPSLVDLDGFTLGVTSTDVVDHLLSH 496
Query: 500 EMSRCSKDGTSNDRMEIYSLDISLMGPAFFFYPLYPPA-EGIPLDFSLAQEALTISTIPD 558
E + + +RM + G FYPLYPPA E + D LA + + +P+
Sbjct: 497 EFAV-----NAGERMHRAINHLFHQGS---FYPLYPPADEDMAYDSQLALKYAQLKQLPN 548
Query: 559 IIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEGSGTFAEI 607
++ILPSD ++FI++++ C+ +NPGR+A +G GTFA
Sbjct: 549 VLILPSDQRHFIRLVN-----------DCLVINPGRVADKKG-GTFARF 585
>sp|P38121|DPOA2_YEAST DNA polymerase alpha subunit B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=POL12 PE=1 SV=1
Length = 705
Score = 143 bits (361), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 115/418 (27%), Positives = 190/418 (45%), Gaps = 84/418 (20%)
Query: 240 DPTVASQRTLFAVGMICCDG---DGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFP 296
DPT+ SQ ++AVG I D D LN +S+ L++S G+RVRLDL ++ E S F
Sbjct: 285 DPTIQSQSEIYAVGRIVPDSPTYDKFLNPESLSLETSRMGGVGRRVRLDLSQVNELSFFL 344
Query: 297 GQVVGIEGSNPSGHCLIASKLVDQIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEEIS 356
GQ+V +G N +G + + +PLP +P+ + QE+ +
Sbjct: 345 GQIVAFKGKNANGDYFTVNSI---LPLP-------YPNSPVSTSQELQEFQANLEGSSLK 394
Query: 357 MIIAAGPFTTTDNLYFEPLKELI-SYAKRKQPQLLILLGPFVDSEHPQIKKG-------- 407
+I+ GP+ DN E L+E I S +P +LI+ GPF+D HP I G
Sbjct: 395 VIVTCGPYFANDNFSLELLQEFIDSINNEVKPHVLIMFGPFIDITHPLIASGKLPNFPQF 454
Query: 408 -TTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDA--NHDFVLPQPPF---DIQ 461
T + DE+F L+ ++ + ++ +L+PS +DA NH PQ +Q
Sbjct: 455 KTQPKTLDELF----LKLFTPILKTISPHIQTVLIPSTKDAISNHA-AYPQASLIRKALQ 509
Query: 462 PPDIIHQITSLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRMEIYSLDI 521
P + NP +F+ N+I GC VD K ++ K GT++ R + +
Sbjct: 510 LPK--RNFKCMANPSSFQINEIYFGCSNVDTFK-----DLKEVIKGGTTSSRYRLDRVSE 562
Query: 522 SLMGPAFFFYPLYPPAEGI---PLDFSLAQEA------------------LTISTI---- 556
++ +YP++P + P D S +E L +S +
Sbjct: 563 HILQQR-RYYPIFPGSIRTRIKPKDVSTKKETNDMESKEEKVYEHISGADLDVSYLGLTE 621
Query: 557 ------PDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEGS-GTFAEI 607
PDI+I+PS++++F +V+ + V +NPGR + G+ G++A+I
Sbjct: 622 FVGGFSPDIMIIPSELQHFARVV-----------QNVVVINPGRFIRATGNRGSYAQI 668
>sp|Q21625|DPOA2_CAEEL DNA polymerase alpha subunit B OS=Caenorhabditis elegans GN=div-1
PE=3 SV=3
Length = 581
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 101/410 (24%), Positives = 181/410 (44%), Gaps = 54/410 (13%)
Query: 214 RFNALENRIRKHANALVSSGLYEEPTDPTVASQRTLFAVGMICCD---GDGHLNDKSVLL 270
R + +RI+K +V G +P++ S ++ G + D + + SV L
Sbjct: 205 RMADIAHRIQKSFEEIVDWG------NPSIPSVDVVYTYGQVIHDETKDNEKFGEHSVAL 258
Query: 271 QSSVEHSGGQRVRLDLHKLGE-FSLFPGQVVGIEGSNPSGHCLIASKLVDQIPLPVDAVV 329
+ G +R+D K+ E +LFPGQ++ + G+N +G L K+ LPV+ V
Sbjct: 259 M--INDEDGTMIRMDFSKMTEDITLFPGQIIAVRGTNETGEELQVDKIFQPAALPVNPV- 315
Query: 330 DVHPSMKQALDQEIHSTVVISRPEEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQL 389
E +T I A GP+T TDN +E L EL+ ++P +
Sbjct: 316 ------------ETDTTKEI--------WFACGPYTATDNCGYEHLCELLDKVVAEKPDI 355
Query: 390 LILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSI-RDAN 448
L+L GPFVD ++ + K T + ++D + ++L ++++ + +G++ + I+ P+ RD
Sbjct: 356 LMLAGPFVDKKNTFLNKPTFNITYDNLLE-DLLLKVKETL--VGTKTQVIIQPNASRDLC 412
Query: 449 HDFVLPQPPF--DIQPPDIIHQITSLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSK 506
V P PF + + I ++ + +P F + ++V + + ++ LS E R S
Sbjct: 413 VPPVFPSAPFQQNRKLDKIKKELIFVADPCIFRISGVEVAMTSSEPIQALSNTEFHR-SA 471
Query: 507 DGTSNDRMEIYSLDISLMGPAFFFYPLYPPAEGIPLDFSLAQEALTISTIPDIIILPSDM 566
+ + DR+ S S + YPL P +P + I + P I+ P+ +
Sbjct: 472 NQENIDRVARLS---SHLLTQQCMYPLEPTE--VPASMGDLLDVCCIGSTPHIVFAPTKL 526
Query: 567 ---------KYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEGSGTFAEI 607
FI +L G K + +N G L GE +A+I
Sbjct: 527 APSAKCVNGSVFINSSTLAKGPTGNYAKMSINLNAGELMPGETVADYAQI 576
>sp|Q54S08|DPOA2_DICDI DNA polymerase alpha subunit B OS=Dictyostelium discoideum GN=polA2
PE=3 SV=2
Length = 623
Score = 86.7 bits (213), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 136/289 (47%), Gaps = 55/289 (19%)
Query: 287 HKLGEFSLFPGQVVGIEGSNPSG-HCLIASKLVDQIPLPVDAVVDVHPSMKQALDQEIHS 345
+ + ++S+F GQVV E +G H +KL PLP +
Sbjct: 321 NNIPDYSMFSGQVVMAESKKIAGSHFYYTNKLYTPNPLPFFS------------------ 362
Query: 346 TVVISRPE--EISMIIAAGPF----TTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDS 399
R E +I+++IA+GPF +T D + PL +L + K+P +L L+GPF+D
Sbjct: 363 ----QRKECGDINVMIASGPFDLQKSTPD---YTPLDDLCNVVSNKKPHILFLMGPFIDE 415
Query: 400 EHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLPQPPFD 459
+ IKK + +F E+F+ ++++L D + S + ++VPS+ D +H+++ PQPP+
Sbjct: 416 SNVHIKKYS--ETFSELFN-NLMKKLNDNI---PSTTKVLIVPSLNDVDHEYIFPQPPY- 468
Query: 460 IQPPDIIHQITSLTNPGTFEANQ-IKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRM--EI 516
+ ++ I + NP T N+ +G + D+ L SK N +I
Sbjct: 469 VPSVNLNSNILFVPNPFTLIINESFTIGITSSDIYNNL-------VSKAHFKNKHTPEDI 521
Query: 517 YSLDISLMGPAFFFYPLYPPAEGIPLDFSLAQEALTISTIPDIIILPSD 565
+++ I+ +YP++P P+ Q PDI+++P +
Sbjct: 522 FNMIINQNN----YYPMHPAQA--PISMRYLQHLNFPGFTPDILVVPKN 564
>sp|A7YWS7|DPOE2_BOVIN DNA polymerase epsilon subunit 2 OS=Bos taurus GN=POLE2 PE=2 SV=1
Length = 527
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 67/176 (38%), Gaps = 25/176 (14%)
Query: 437 RAILVPSIRDANHDFVLPQPPFDIQPPDIIHQITSLTNPGTFEANQIKVGCCTVDVL--- 493
R + VP D +LP+PPF I ++ F N ++ CT +++
Sbjct: 360 RFVFVPGPEDPGFGSILPRPPFA---ESITNEFRQRVPFSVFTTNPCRIQYCTQEIIVFR 416
Query: 494 KQLSGEEMSRCSKDGTSNDRMEIYSLDISLMGPAFFFYPLYPPAEGIPLDFSLAQEALTI 553
+ L + C + +SN + + + L PLY D+ AL +
Sbjct: 417 EDLVNKMCRNCVRFPSSNLDIPNHFVKTVLSQGHLTPLPLYVCPVYWAYDY-----ALRV 471
Query: 554 STIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEGSGTFAEIYY 609
+PD++++ F +C+C+NPG + SG +++Y
Sbjct: 472 YPVPDLLVIADKYDPFTLT-----------NTECLCINPGSFPR---SGFSFKVFY 513
>sp|P56282|DPOE2_HUMAN DNA polymerase epsilon subunit 2 OS=Homo sapiens GN=POLE2 PE=1 SV=2
Length = 527
Score = 34.3 bits (77), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 28/194 (14%)
Query: 422 LRRLQDYV-EY--MGSEVRAILVPSIRDANHDFVLPQPPFDIQPPDIIHQITSLTNPGTF 478
L+ L D + EY + R + VP D +LP+PP I ++ F
Sbjct: 342 LKTLADIICEYPDIHQSSRFVFVPGPEDPGFGSILPRPPLA---ESITNEFRQRVPFSVF 398
Query: 479 EANQIKVGCCT--VDVLKQLSGEEMSR-CSKDGTSNDRMEIYSLDISLMGPAFFFYPLYP 535
N ++ CT + V ++ +M R C + +SN + + + L PLY
Sbjct: 399 TTNPCRIQYCTQEITVFREDLVNKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYV 458
Query: 536 PAEGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRL 595
D+ AL + +PD++++ F +C+C+NPG
Sbjct: 459 CPVYWAYDY-----ALRVYPVPDLLVIADKYDPFTTT-----------NTECLCINPGSF 502
Query: 596 AKGEGSGTFAEIYY 609
+ SG +++Y
Sbjct: 503 PR---SGFSFKVFY 513
>sp|Q5ZKQ6|DPOE2_CHICK DNA polymerase epsilon subunit 2 OS=Gallus gallus GN=POLE2 PE=2
SV=1
Length = 527
Score = 34.3 bits (77), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 66/176 (37%), Gaps = 25/176 (14%)
Query: 437 RAILVPSIRDANHDFVLPQPPFDIQPPDIIHQITSLTNPGTFEANQIKVGCCTVDVL--- 493
R + VP D VLP+PP +I + L F N +V CT +++
Sbjct: 360 RFVFVPGPEDPGPGSVLPRPPLA---ENITQEFRQLVPFSVFTTNPCRVQYCTQEIIIFR 416
Query: 494 KQLSGEEMSRCSKDGTSNDRMEIYSLDISLMGPAFFFYPLYPPAEGIPLDFSLAQEALTI 553
+ L + C + +S+ + + + L PLY D+ AL +
Sbjct: 417 EDLVNKMCRNCVRFPSSSMDIPNHFVKTILSQGHLTPLPLYVSPVYWAYDY-----ALRV 471
Query: 554 STIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEGSGTFAEIYY 609
+PD++++ F C+C+NPG + SG +++Y
Sbjct: 472 YPVPDMLVIADKYDPFTVT-----------NTDCLCINPGSFPR---SGFSFKVFY 513
>sp|Q0TM79|CARB_CLOP1 Carbamoyl-phosphate synthase large chain OS=Clostridium perfringens
(strain ATCC 13124 / NCTC 8237 / Type A) GN=carB PE=3
SV=1
Length = 1067
Score = 32.7 bits (73), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 30/94 (31%)
Query: 301 GIEGSNPSGHCLIASKLVDQIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEEISMIIA 360
GIE S HC++A + QEI + V+ + PE +S
Sbjct: 570 GIEFDYASVHCVMALR-----------------------KQEIETIVINNNPETVST--- 603
Query: 361 AGPFTTTDNLYFEPLKE--LISYAKRKQPQLLIL 392
F+ +D LYFEPL E +++ +++P +IL
Sbjct: 604 --DFSISDKLYFEPLTEEDVLNIIDKEKPDGVIL 635
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 252,437,434
Number of Sequences: 539616
Number of extensions: 11636078
Number of successful extensions: 27035
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 26974
Number of HSP's gapped (non-prelim): 45
length of query: 623
length of database: 191,569,459
effective HSP length: 124
effective length of query: 499
effective length of database: 124,657,075
effective search space: 62203880425
effective search space used: 62203880425
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)