Query 006976
Match_columns 623
No_of_seqs 216 out of 328
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 17:10:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006976.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006976hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1625 DNA polymerase alpha-p 100.0 3E-122 6E-127 988.3 45.7 570 2-623 4-600 (600)
2 COG5214 POL12 DNA polymerase a 100.0 1.4E-91 3.1E-96 724.3 35.3 524 15-611 4-552 (581)
3 PF04042 DNA_pol_E_B: DNA poly 100.0 7.6E-40 1.6E-44 325.2 9.2 202 357-571 1-209 (209)
4 PF08418 Pol_alpha_B_N: DNA po 100.0 3.6E-36 7.7E-41 308.3 2.7 221 12-246 1-253 (253)
5 KOG3818 DNA polymerase epsilon 100.0 3.7E-30 8E-35 270.8 22.3 367 204-623 125-525 (525)
6 PRK04036 DNA polymerase II sma 100.0 7.4E-27 1.6E-31 260.8 31.9 338 202-598 114-471 (504)
7 PTZ00235 DNA polymerase epsilo 99.9 3.5E-21 7.5E-26 198.0 19.8 234 352-608 25-278 (291)
8 KOG2732 DNA polymerase delta, 99.9 1.3E-19 2.8E-24 190.8 28.4 348 205-609 27-423 (435)
9 cd07386 MPP_DNA_pol_II_small_a 99.8 2.1E-19 4.5E-24 183.2 18.7 227 359-616 3-238 (243)
10 cd07387 MPP_PolD2_C PolD2 (DNA 99.8 1.9E-17 4.1E-22 169.9 21.5 236 357-623 2-257 (257)
11 COG1311 HYS2 Archaeal DNA poly 99.8 7.9E-17 1.7E-21 174.2 26.1 330 213-599 103-450 (481)
12 PRK09453 phosphodiesterase; Pr 97.3 0.013 2.8E-07 57.2 16.3 159 355-610 1-163 (182)
13 cd00841 MPP_YfcE Escherichia c 97.2 0.011 2.5E-07 55.5 14.2 145 357-611 2-148 (155)
14 cd07394 MPP_Vps29 Homo sapiens 97.0 0.022 4.7E-07 55.8 15.0 53 556-621 106-164 (178)
15 cd07388 MPP_Tt1561 Thermus the 96.8 0.035 7.6E-07 56.5 15.1 72 353-447 3-74 (224)
16 COG0622 Predicted phosphoester 96.8 0.047 1E-06 53.4 15.2 152 355-612 2-156 (172)
17 COG2129 Predicted phosphoester 96.7 0.018 4E-07 58.1 12.1 198 354-612 3-217 (226)
18 PHA02546 47 endonuclease subun 96.7 0.016 3.5E-07 62.4 12.4 101 373-487 26-127 (340)
19 TIGR00040 yfcE phosphoesterase 96.7 0.06 1.3E-06 51.1 14.5 149 356-612 2-153 (158)
20 PF14582 Metallophos_3: Metall 96.3 0.00069 1.5E-08 68.4 -1.2 42 354-400 5-46 (255)
21 PF12850 Metallophos_2: Calcin 96.2 0.038 8.3E-07 51.3 10.0 153 355-611 1-155 (156)
22 PRK05340 UDP-2,3-diacylglucosa 96.0 0.034 7.4E-07 56.8 9.4 115 356-493 2-118 (241)
23 TIGR00619 sbcd exonuclease Sbc 95.4 0.066 1.4E-06 55.3 9.1 86 372-477 25-111 (253)
24 TIGR01854 lipid_A_lpxH UDP-2,3 95.4 0.043 9.4E-07 55.7 7.4 97 376-493 18-116 (231)
25 PRK10966 exonuclease subunit S 94.9 0.062 1.4E-06 59.5 7.3 82 375-476 28-109 (407)
26 PRK11340 phosphodiesterase Yae 94.1 0.22 4.8E-06 51.9 8.9 118 353-491 48-166 (271)
27 cd07385 MPP_YkuE_C Bacillus su 92.2 0.58 1.3E-05 46.5 8.2 111 355-489 2-113 (223)
28 cd00840 MPP_Mre11_N Mre11 nucl 91.7 0.88 1.9E-05 44.9 8.9 64 372-449 27-90 (223)
29 COG2908 Uncharacterized protei 91.6 0.35 7.5E-06 49.5 5.8 100 374-494 18-117 (237)
30 cd07392 MPP_PAE1087 Pyrobaculu 91.5 1.6 3.6E-05 41.6 10.3 56 371-448 10-65 (188)
31 cd07395 MPP_CSTP1 Homo sapiens 91.1 1.2 2.7E-05 45.6 9.5 84 353-448 3-99 (262)
32 TIGR00583 mre11 DNA repair pro 91.1 1.2 2.7E-05 49.3 10.0 50 354-403 3-59 (405)
33 COG0420 SbcD DNA repair exonuc 91.0 0.72 1.6E-05 50.5 8.1 73 371-457 25-97 (390)
34 cd07398 MPP_YbbF-LpxH Escheric 90.2 0.82 1.8E-05 45.2 7.0 101 375-495 19-120 (217)
35 cd08166 MPP_Cdc1_like_1 unchar 90.2 1.2 2.6E-05 44.6 8.0 64 381-455 37-100 (195)
36 cd07402 MPP_GpdQ Enterobacter 88.6 1.8 3.8E-05 43.5 8.2 58 372-448 24-83 (240)
37 cd08165 MPP_MPPE1 human MPPE1 88.5 1.3 2.8E-05 42.4 6.7 64 375-449 27-90 (156)
38 cd07400 MPP_YydB Bacillus subt 88.0 1.4 3E-05 40.7 6.4 57 375-447 24-80 (144)
39 cd07383 MPP_Dcr2 Saccharomyces 87.8 3 6.6E-05 41.0 9.1 60 373-446 28-87 (199)
40 cd07396 MPP_Nbla03831 Homo sap 87.8 2 4.4E-05 44.5 8.2 78 356-449 2-87 (267)
41 PRK11148 cyclic 3',5'-adenosin 86.5 3.3 7.1E-05 43.0 8.9 77 353-448 13-98 (275)
42 cd07384 MPP_Cdc1_like Saccharo 86.2 2.2 4.7E-05 41.5 6.9 66 374-449 33-101 (171)
43 COG1409 Icc Predicted phosphoh 86.2 3.3 7.2E-05 42.3 8.7 77 356-449 2-79 (301)
44 PF00149 Metallophos: Calcineu 85.4 2.6 5.5E-05 37.7 6.6 79 355-449 1-79 (200)
45 cd07391 MPP_PF1019 Pyrococcus 83.7 3.5 7.6E-05 39.8 7.1 63 373-450 28-90 (172)
46 cd07401 MPP_TMEM62_N Homo sapi 82.7 2.7 5.9E-05 43.4 6.2 66 376-448 23-89 (256)
47 cd07399 MPP_YvnB Bacillus subt 81.0 8 0.00017 38.8 8.8 75 356-446 2-80 (214)
48 KOG3662 Cell division control 80.8 5.7 0.00012 44.0 8.0 90 352-454 46-151 (410)
49 TIGR03729 acc_ester putative p 80.2 7.6 0.00016 39.4 8.4 55 374-448 20-74 (239)
50 PF03100 CcmE: CcmE; InterPro 77.3 24 0.00052 32.9 10.1 73 245-322 49-124 (131)
51 cd08163 MPP_Cdc1 Saccharomyces 73.3 11 0.00023 39.2 7.3 55 384-448 43-97 (257)
52 cd00842 MPP_ASMase acid sphing 66.5 28 0.00061 36.3 8.8 88 359-454 38-128 (296)
53 PHA02239 putative protein phos 63.6 25 0.00055 36.1 7.6 70 356-448 2-73 (235)
54 COG1408 Predicted phosphohydro 63.3 26 0.00056 37.1 7.8 81 353-453 43-123 (284)
55 PRK13254 cytochrome c-type bio 62.7 60 0.0013 31.2 9.4 75 244-323 49-125 (148)
56 cd07393 MPP_DR1119 Deinococcus 62.2 20 0.00042 36.4 6.5 57 373-448 26-84 (232)
57 COG0329 DapA Dihydrodipicolina 59.9 27 0.00059 37.1 7.3 54 362-427 14-68 (299)
58 cd08164 MPP_Ted1 Saccharomyces 59.3 36 0.00079 34.0 7.6 64 375-449 32-112 (193)
59 cd00408 DHDPS-like Dihydrodipi 59.2 31 0.00066 35.9 7.4 32 363-394 8-39 (281)
60 cd07425 MPP_Shelphs Shewanella 59.0 34 0.00074 34.2 7.5 64 371-448 9-80 (208)
61 PRK03170 dihydrodipicolinate s 58.7 29 0.00063 36.4 7.2 36 360-395 9-44 (292)
62 PRK03620 5-dehydro-4-deoxygluc 55.2 35 0.00076 36.2 7.2 33 362-394 17-49 (303)
63 TIGR02313 HpaI-NOT-DapA 2,4-di 55.1 36 0.00078 36.0 7.2 32 363-394 11-42 (294)
64 cd00951 KDGDH 5-dehydro-4-deox 54.8 35 0.00077 35.9 7.1 34 362-395 10-43 (289)
65 cd07379 MPP_239FB Homo sapiens 54.5 38 0.00082 31.0 6.5 48 383-448 16-63 (135)
66 cd07378 MPP_ACP5 Homo sapiens 54.1 26 0.00056 36.1 5.8 63 376-449 22-84 (277)
67 PLN02417 dihydrodipicolinate s 54.0 39 0.00084 35.5 7.2 32 363-394 12-43 (280)
68 cd07390 MPP_AQ1575 Aquifex aeo 54.0 66 0.0014 30.8 8.3 86 375-491 29-116 (168)
69 cd00839 MPP_PAPs purple acid p 52.8 1.5E+02 0.0033 30.5 11.5 78 353-449 3-82 (294)
70 TIGR03249 KdgD 5-dehydro-4-deo 52.3 43 0.00093 35.4 7.2 33 362-394 15-47 (296)
71 cd00950 DHDPS Dihydrodipicolin 52.2 44 0.00094 34.9 7.2 35 361-395 9-43 (284)
72 TIGR00024 SbcD_rel_arch putati 51.3 30 0.00065 35.2 5.7 59 373-449 45-103 (225)
73 PLN02533 probable purple acid 51.2 54 0.0012 36.7 8.1 75 353-449 138-212 (427)
74 cd00954 NAL N-Acetylneuraminic 50.6 51 0.0011 34.6 7.5 32 363-394 11-43 (288)
75 TIGR00683 nanA N-acetylneurami 49.3 51 0.0011 34.8 7.2 32 363-394 11-43 (290)
76 cd00844 MPP_Dbr1_N Dbr1 RNA la 48.0 1.1E+02 0.0023 32.0 9.3 109 371-490 10-123 (262)
77 cd00144 MPP_PPP_family phospho 47.6 32 0.0007 34.0 5.2 60 371-448 9-68 (225)
78 cd07404 MPP_MS158 Microscilla 47.5 21 0.00046 33.7 3.7 49 380-448 20-68 (166)
79 PF00701 DHDPS: Dihydrodipicol 47.1 85 0.0018 32.8 8.5 39 357-395 6-44 (289)
80 TIGR00674 dapA dihydrodipicoli 47.0 62 0.0013 33.9 7.4 32 363-394 9-40 (285)
81 PRK04147 N-acetylneuraminate l 45.7 60 0.0013 34.2 7.1 35 360-394 11-46 (293)
82 cd00838 MPP_superfamily metall 44.5 72 0.0016 27.4 6.4 52 380-448 20-71 (131)
83 PRK00166 apaH diadenosine tetr 41.8 38 0.00083 35.6 4.9 57 371-448 12-69 (275)
84 COG2332 CcmE Cytochrome c-type 41.2 1.2E+02 0.0026 29.3 7.4 75 244-322 49-125 (153)
85 PRK13150 cytochrome c-type bio 41.2 2.2E+02 0.0048 27.7 9.4 76 245-323 56-132 (159)
86 cd07422 MPP_ApaH Escherichia c 40.3 43 0.00094 34.9 4.9 57 371-448 10-67 (257)
87 cd00952 CHBPH_aldolase Trans-o 39.8 77 0.0017 33.8 6.8 32 363-394 12-50 (309)
88 PF10686 DUF2493: Protein of u 37.3 83 0.0018 26.3 5.2 37 354-394 3-39 (71)
89 cd07397 MPP_DevT Myxococcus xa 37.3 94 0.002 32.1 6.7 63 356-449 2-64 (238)
90 PRK13165 cytochrome c-type bio 35.3 3.2E+02 0.0068 26.7 9.5 75 245-323 56-132 (160)
91 cd04479 RPA3 RPA3: A subfamily 33.0 3.3E+02 0.0072 24.1 8.7 59 247-316 16-74 (101)
92 PF10723 RepB-RCR_reg: Replica 31.2 57 0.0012 28.3 3.4 31 19-49 49-79 (84)
93 PRK07217 replication factor A; 30.7 81 0.0018 33.9 5.1 48 2-50 8-55 (311)
94 PF14359 DUF4406: Domain of un 30.6 2E+02 0.0043 25.2 6.8 71 359-447 2-72 (92)
95 PRK11439 pphA serine/threonine 30.1 39 0.00085 33.9 2.6 39 356-399 18-57 (218)
96 PHA01623 hypothetical protein 30.1 57 0.0012 26.0 3.0 37 12-50 16-52 (56)
97 cd04490 PolII_SU_OBF PolII_SU_ 29.6 3.3E+02 0.0073 22.9 7.8 64 248-319 1-74 (79)
98 PF01336 tRNA_anti-codon: OB-f 28.9 1.1E+02 0.0024 24.3 4.6 64 249-317 1-72 (75)
99 PF13567 DUF4131: Domain of un 28.6 2.3E+02 0.0049 25.8 7.4 61 246-306 75-141 (176)
100 COG5493 Uncharacterized conser 28.3 50 0.0011 33.1 2.8 30 374-403 183-212 (231)
101 PRK00741 prfC peptide chain re 27.6 2.6E+02 0.0057 32.2 9.0 66 292-387 354-421 (526)
102 KOG3325 Membrane coat complex 27.3 1.2E+02 0.0026 29.4 5.0 46 557-613 108-160 (183)
103 cd03238 ABC_UvrA The excision 27.3 52 0.0011 32.1 2.8 32 278-311 4-35 (176)
104 cd07413 MPP_PA3087 Pseudomonas 26.6 1.2E+02 0.0026 30.6 5.4 59 371-448 10-76 (222)
105 cd00953 KDG_aldolase KDG (2-ke 24.0 78 0.0017 33.2 3.6 32 362-394 10-41 (279)
106 COG2350 Uncharacterized protei 23.6 76 0.0016 28.0 2.8 15 388-402 35-49 (92)
107 KOG3770 Acid sphingomyelinase 23.2 4.1E+02 0.009 31.1 9.2 135 306-461 136-276 (577)
108 KOG2863 RNA lariat debranching 23.2 1.3E+02 0.0029 33.0 5.1 93 384-490 28-125 (456)
109 TIGR00668 apaH bis(5'-nucleosy 22.4 76 0.0017 33.6 3.1 29 371-399 12-41 (279)
110 cd07424 MPP_PrpA_PrpB PrpA and 21.6 77 0.0017 31.4 2.9 39 357-400 3-42 (207)
111 PF14836 Ubiquitin_3: Ubiquiti 21.6 70 0.0015 28.1 2.2 23 289-311 64-86 (88)
112 PF07788 DUF1626: Protein of u 21.3 98 0.0021 26.0 2.9 29 372-400 31-59 (70)
113 TIGR00503 prfC peptide chain r 21.2 2.8E+02 0.006 32.0 7.6 25 367-392 402-426 (527)
114 COG1407 Predicted ICC-like pho 21.1 2.6E+02 0.0057 28.9 6.6 70 371-455 47-117 (235)
115 cd04090 eEF2_II_snRNP Loc2 eEF 20.8 2.5E+02 0.0055 24.1 5.6 15 292-306 69-83 (94)
116 KOG2310 DNA repair exonuclease 20.6 3.4E+02 0.0075 31.5 7.8 66 353-429 12-84 (646)
117 cd03298 ABC_ThiQ_thiamine_tran 20.2 59 0.0013 32.0 1.7 22 291-312 18-39 (211)
No 1
>KOG1625 consensus DNA polymerase alpha-primase complex, polymerase-associated subunit B [Replication, recombination and repair]
Probab=100.00 E-value=2.7e-122 Score=988.33 Aligned_cols=570 Identities=35% Similarity=0.584 Sum_probs=473.8
Q ss_pred HHHHHHHHHH-cCCCCCChHHHHHHHHHHHHHcCCChhHHHHHHhhhhhhccCCCCCCChhhHHHHHHHHHHHHHHhhh-
Q 006976 2 EEEIKAEFQK-NGFNFVDEGEVLKKCLTFCINYNLKPSDLVSSWEVYYLNRQLDESTVKDDEMDGFMLHLQNEQKEAII- 79 (623)
Q Consensus 2 ~~~i~~ef~~-fG~~~~~~~~vl~kc~~lc~~y~l~~~dlv~~Weafs~~~~~~~~~l~~~nL~~F~~~l~~~~~~~~~- 79 (623)
.+++..||.- ||+ +.++++++||++||+.|..+++++|++|++|++|++ +..++.+||+.|++++|+++++++.
T Consensus 4 ~~~~~~ef~p~f~~--~e~d~~lekl~~Lc~~y~~~~~~~ve~w~~~~~n~~--~~d~t~~~i~~F~~~~l~~~~~ka~~ 79 (600)
T KOG1625|consen 4 SEDFNAEFEPFFGL--PEEDAFLEKLVELCITYRQDGEDKVEQWVAFRLNTG--KLDLTSENIDAFEEELLEQQKQKAVH 79 (600)
T ss_pred hHHHHhhhccccCC--cHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhccC--CcCchhhhHHHHHHHHHHHHHHHhcc
Confidence 3678888876 887 445689999999999999999999999999999986 4456679999999999998887543
Q ss_pred ccCCccccccCccccccccccchh-hhcccC-CCCCCCC-CcCCCCCCccccCCCCCCCC----CCCCCCcCCCccccC-
Q 006976 80 KEEPSLHIYSSKDVDMILNDEDEN-IAEDIL-GTPPDNL-KLYSDALDSTYKANANGYSS----DKPSKLVTPFGRRTE- 151 (623)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~tP~~~~-k~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~r~~- 151 (623)
+.++..+-++..+..+..+..... .+++++ +||+.++ +..+.++++.++.|..+.+. ++.+|..++|..|..
T Consensus 80 ~~~~~k~~~~~r~~v~~~s~~~~~~~~e~i~dst~s~gsq~~l~~p~t~~~~~~~~g~s~~~s~sp~SP~s~~f~k~~~~ 159 (600)
T KOG1625|consen 80 VPRSVKKNASGRDPVAKKSGFQLPGDEEDIPDSTPSAGSQSALSTPFTPSAIARASGDSLDFSPSPSSPSSEKFEKRASV 159 (600)
T ss_pred ccccccccccCCCchhhhccccCCCccccCcccccccccccccCCCCCcchhhhhcccCcccccCCCCCCcchhhccccC
Confidence 233333333333332221111111 123333 5999998 78889999888766555443 333355566766665
Q ss_pred -CceEEEecCCCCCCCCCCCCCCCCCchhhhhhhcccCCccceeecC--CCCCCccchhhhcHHHHHHHHHHHHHHHHHH
Q 006976 152 -KLVVKFNINNLPNTENGCIEHDDENTEDDIIKRIKTGKKCSLMVHG--SGPEPGCRFMYDRTEDRFNALENRIRKHANA 228 (623)
Q Consensus 152 -~g~v~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~r~M~~kl~~r~~~L~~rI~~~~~~ 228 (623)
+|+|+.+||......|...+. .+ ..+++.+.. +.++++|||||+|+.||+++|++||++|+.+
T Consensus 160 n~G~Vv~~~~~~~~~~~s~~~s----------~~----~~~~~kv~~~~~a~~~~~~~m~dkl~d~~e~l~~Ri~~~~~~ 225 (600)
T KOG1625|consen 160 NPGEVVTTFGGEKLKDVSSKGS----------VG----PSTQLKVTNFIDAKKPSYRYMYDKLSDRSEVLRDRIESFAPA 225 (600)
T ss_pred CcchhhhhcCcccccccccCCC----------cC----CcceeeccCccccCCcchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999763333333221 00 125555554 4789999999999999999999999999999
Q ss_pred HHHcCCC-CCCCCCCcccCccEEEEEEEEECC---CCCCCCceEEEeeccCCCCCeEEEeecCCCCcccccCCCEEEEEe
Q 006976 229 LVSSGLY-EEPTDPTVASQRTLFAVGMICCDG---DGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEG 304 (623)
Q Consensus 229 ~~~~~~~-~~~~~~~~~s~~~v~vvGrI~~d~---egkLn~~sv~LE~s~~~~~G~rV~Ldls~l~~~slFPGQIV~v~G 304 (623)
+++++++ +++++++.+||+.|++||||+||+ +||||++||+||+||+++.|+||+|||+++++||+||||||+|||
T Consensus 226 ~~~~~~~~ed~~~p~~~Sq~~v~avG~I~~d~~~~~~kln~~Sv~Less~e~~~g~~Vrldls~l~e~SiFPGQIVavkG 305 (600)
T KOG1625|consen 226 IQESYLISEDFANPSIPSQSSVYAVGQIVCDSTKDNGKLNEESVLLESSREDSSGVRVRLDLSRLKEYSIFPGQIVAVKG 305 (600)
T ss_pred HHHHhccccccCCcccccccceEEEEEEecCCCCcccccCccceEeeeccccCCCceEEeehhhccceeecCCcEEEEee
Confidence 9999998 999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEeEeccCCCCCCCccccCCCchhhhhhhhccccccccCCCCeEEEEEeCCCcCCCCCCchHHHHHHHHHHc
Q 006976 305 SNPSGHCLIASKLVDQIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEEISMIIAAGPFTTTDNLYFEPLKELISYAKR 384 (623)
Q Consensus 305 ~n~~G~~f~V~ei~~~~Pl~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~I~vAsGPft~~d~l~~epL~~ll~~~~~ 384 (623)
+|++|++|+|++||...|+|.+. .| .++ +.+.+ ...+ |+|||||||++||+.|+||.|||++++.
T Consensus 306 ~N~~G~~l~v~ki~~~~plp~~~---~~---~qe-d~~~~-------~~~~-ivvasGPyt~sDnl~yepL~dll~~v~~ 370 (600)
T KOG1625|consen 306 KNPTGEKLTVEKILPIPPLPIPV---QP---LQE-DATFE-------ANTV-IVVASGPYTASDNLSYEPLCDLLDYVNA 370 (600)
T ss_pred ecCCCCeEEeeeeccCCCCCCCc---Cc---hhh-hhhcc-------ccce-EEEEecCccCccccchhHHHHHHHHHhc
Confidence 99999999999999766676222 22 221 21111 1124 9999999999999999999999999999
Q ss_pred cCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCCCCCCCCCCCCCCCCCC
Q 006976 385 KQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLPQPPFDIQPPD 464 (623)
Q Consensus 385 ~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~~~~v~PQpp~~~~~~~ 464 (623)
++||||||+|||||++|++|++|.++.||+|+|+++|+..|+.+. ++.+++|||||++|+++++|||||||.+..+.
T Consensus 371 ~~pdvLIL~GPFlD~~h~~i~~~~~t~t~delF~~~i~~ile~~~---~~~~~vVlvPs~~Da~~~~vfPq~pf~~~~~~ 447 (600)
T KOG1625|consen 371 ERPDVLILFGPFLDSKHPLINKGALTITFDELFEKLILGILETLV---GSKTQVVLVPSTNDALCLPVFPQPPFARNRLS 447 (600)
T ss_pred CCCCEEEEeccccCccChhhccCCcCccHHHHHHHHHHHHHHhcc---CCcceEEEeccccccccCccCCCCchhhhhcc
Confidence 999999999999999999999999999999999997776666553 46789999999999999999999999776554
Q ss_pred CC-CceEEecCCcEEEECCEEEEeechHHHHhhhhhhcccCCCCCCcchhHHHHHHhhhccccccccccCCCCCCccccc
Q 006976 465 II-HQITSLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRMEIYSLDISLMGPAFFFYPLYPPAEGIPLD 543 (623)
Q Consensus 465 l~-~~v~~~~NP~~~~in~v~igvts~Dvl~~L~~~ei~~~~~~~~~~dr~~rl~~hi~~l~~QrsfyPl~P~~~~~~lD 543 (623)
++ +|++|++|||.|+|||+.|||||+|+++||+++|+++++. +.++|||+||++|| | +|||||||||| +++++|
T Consensus 448 ~~~~~l~~~~nPc~f~in~v~vg~ts~D~l~~Ls~eE~~~~~~-~~~~dR~~Rls~Hl--L-~QrsfYPL~PP-~dl~~s 522 (600)
T KOG1625|consen 448 DEKKNLKCVANPCLFSINGVEVGVTSTDTLLHLSSEEFFRNAL-QSNGDRLARLSSHL--L-TQRSFYPLFPP-EDLPVS 522 (600)
T ss_pred CcccceEEccCcceEEEccEEEEeecchHHHHhhhhHhhcCCC-CcchHHHHHHHHHH--h-hcccccccCCc-hhcchh
Confidence 44 7999999999999999999999999999999999999763 45789999999999 9 99999999996 678999
Q ss_pred hhcccccccCCCCCcEEEcCCCCcceEEEecCCCCCCccccceEEEEcCCccccCCCCceEEEEEEcCC-----c----c
Q 006976 544 FSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEGSGTFAEIYYHGS-----P----E 614 (623)
Q Consensus 544 ~~~~~~~l~l~~~PDILIlPS~l~~F~k~v~~~~~~~~~~~~~~v~INPG~l~k~~~~Gtya~l~v~~~-----~----~ 614 (623)
++.+.+++++..+|||||+||+|+||+|+|++ |||||||+++||.++||||+++|+.+ . .
T Consensus 523 ~~~~~~~~~~~~~PdIlIlPSdLr~Fvk~V~~-----------~V~iNpGr~aKg~~~Gtfa~lti~~pe~G~~~e~v~~ 591 (600)
T KOG1625|consen 523 YSLLLKYAQIGSTPDILILPSDLRHFVKDVNG-----------CVVINPGRLAKGTNGGTFAKLTIRLPEAGMGGETVWD 591 (600)
T ss_pred hhhHHHHhccCCCCcEEEechhhHHHHHhcCC-----------eEEEcchhhccCcCCceeEEEEEecCCCCCCcccccc
Confidence 99888999999999999999999999999964 99999999999999999999999932 2 2
Q ss_pred cccceeeeC
Q 006976 615 MMNASIISI 623 (623)
Q Consensus 615 ~~~a~~~~i 623 (623)
.+.|+|+||
T Consensus 592 ~~~~qi~ki 600 (600)
T KOG1625|consen 592 RAAAQILKI 600 (600)
T ss_pred chhhheecC
Confidence 478899987
No 2
>COG5214 POL12 DNA polymerase alpha-primase complex, polymerase-associated subunit B [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.4e-91 Score=724.33 Aligned_cols=524 Identities=26% Similarity=0.374 Sum_probs=406.7
Q ss_pred CCCChHHHHHHHHHHHHHcCCChhHHHHHHhhhhhhccCCCCCCChhhHHHHHHHHHHHHHHh---hhccCC---ccccc
Q 006976 15 NFVDEGEVLKKCLTFCINYNLKPSDLVSSWEVYYLNRQLDESTVKDDEMDGFMLHLQNEQKEA---IIKEEP---SLHIY 88 (623)
Q Consensus 15 ~~~~~~~vl~kc~~lc~~y~l~~~dlv~~Weafs~~~~~~~~~l~~~nL~~F~~~l~~~~~~~---~~~~~~---~~~~~ 88 (623)
.++ ++++++....|...++|+.++|+.+||+||+.+....+ +++.++.|.+.++=+..+. ..|..+ ++.-.
T Consensus 4 p~d-~~ell~~~~~l~qi~~m~~q~mf~kwes~~~qr~~t~~--dl~t~~~f~k~mk~qmerqv~at~k~n~erksi~q~ 80 (581)
T COG5214 4 PID-DEELLDERNKLLQICNMDEQTMFYKWESWCLQRGNTKL--DLDTFKAFAKDMKFQMERQVKATLKQNPERKSIKQI 80 (581)
T ss_pred CCC-cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCccc--ccHHHHHHHHHHHHHHHHHHHHHhccCccccccccC
Confidence 355 45999999999999999999999999999999866644 4588999999887655432 122111 11111
Q ss_pred cCccccccccccchhhhcccCCCCCCCCCcCCCCCCccccCCCCC-CCCCCCCCCcCCC-ccccCCceEEEecCCC-CCC
Q 006976 89 SSKDVDMILNDEDENIAEDILGTPPDNLKLYSDALDSTYKANANG-YSSDKPSKLVTPF-GRRTEKLVVKFNINNL-PNT 165 (623)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~tP~~~~k~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~r~~~g~v~~~~n~~-~~~ 165 (623)
...+.+. +++-|-+- + . .+.+ .+-++|+.. .| -..+++|.|+..||.. -..
T Consensus 81 pgmnids------------~lgl~vk~-----t----a---~gds~mq~skp~t~--tfe~~ssdag~vl~~ln~e~~ki 134 (581)
T COG5214 81 PGMNIDS------------ILGLPVKT-----T----A---SGDSLMQESKPSTE--TFELNSSDAGRVLMDLNREVFKI 134 (581)
T ss_pred CCccccc------------ccCceeEe-----e----e---cchhHhhccCCCcc--eeecCCCchhhHHHhcCHHHhee
Confidence 1011111 11111000 0 0 0000 011121110 01 0123799999999975 111
Q ss_pred CCCCCCCCCCCchhhhhhhcccCCccceeecCCCCCCccchhhhcHHHHHHHHHHHHHHHHHHHHHcCCC--CCCCCCCc
Q 006976 166 ENGCIEHDDENTEDDIIKRIKTGKKCSLMVHGSGPEPGCRFMYDRTEDRFNALENRIRKHANALVSSGLY--EEPTDPTV 243 (623)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~M~~kl~~r~~~L~~rI~~~~~~~~~~~~~--~~~~~~~~ 243 (623)
. ...++ + +.+.+.+ +.+|.+++.||+|||||.+.+++||+||+.|......++++ ++|.+|+.
T Consensus 135 ~-s~~p~------------v-ps~~V~v-apfd~k~~~~r~m~q~L~~~s~vlddrielfs~~~~~~y~ls~eDfa~p~~ 199 (581)
T COG5214 135 L-SRRPY------------V-PSSDVRV-APFDLKPRVSRFMYQKLRKKSKVLDDRIELFSMKPYFLYLLSIEDFAPPNN 199 (581)
T ss_pred c-cCCCC------------C-Cccceee-cccccchhHHHHHHHHHhhhhhhhHHHHHHHhhhhHHHhcCCHhhcCCccc
Confidence 1 11111 1 1122222 34578889999999999999999999999999988877654 78999999
Q ss_pred ccCccEEEEEEEEECC---CCCCCCceEEEeeccCCCCCeEEEeecCCCCcccccCCCEEEEEeecCCCCeEEEeEeccC
Q 006976 244 ASQRTLFAVGMICCDG---DGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASKLVDQ 320 (623)
Q Consensus 244 ~s~~~v~vvGrI~~d~---egkLn~~sv~LE~s~~~~~G~rV~Ldls~l~~~slFPGQIV~v~G~n~~G~~f~V~ei~~~ 320 (623)
.||+++++||||+-++ +++||..|+.||+||+.|.|.||+||++.+++||+||||||||||+|++|++|+|++|+ +
T Consensus 200 ~sqs~~y~vGrIv~~s~~~g~~Ln~eSv~lesSr~gg~gvrVRL~l~~l~~yS~FpGQIVavKGkN~~G~~ftv~~il-p 278 (581)
T COG5214 200 VSQSSFYTVGRIVNPSTNFGHKLNSESVFLESSRDGGNGVRVRLNLAHLQRYSVFPGQIVAVKGKNTDGGKFTVEAIL-P 278 (581)
T ss_pred cccCceEEEEEecCCCcccccccCcceeeeeeecccCCCeEEEeehhhccccccccccEEEEecccCCCCeEEeeeee-c
Confidence 9999999999999885 68999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CCCCCCccccCCCchhhhhhhhccccccccCCCCeEEEEEeCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeCcccCCC
Q 006976 321 IPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSE 400 (623)
Q Consensus 321 ~Pl~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~I~vAsGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~ 400 (623)
+|..+ -.|.+..|+... +.....+.+++|+++||||...|+|.++||.+++++++....|||||+|||||++
T Consensus 279 iP~~p----~~p~s~~qE~~~----fqan~~~q~~~iv~~sGPy~~~dd~s~~pl~~~id~vn~n~vdvlIl~GPFidi~ 350 (581)
T COG5214 279 IPVVP----INPASDGQEKKY----FQANTNNQPTSIVAFSGPYGPRDDLSGSPLFDAIDRVNANDVDVLILIGPFIDIN 350 (581)
T ss_pred cCCcC----CCcCcchhhhhh----hccccCCCceEEEEEcCCCCCccccCcChHHHHHHHhccCCccEEEEeccccCcc
Confidence 66322 123333444322 2223556899999999999999999999999999999999999999999999999
Q ss_pred CccccCCCcc----ccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCC-CCCCCCCCCCCCCCCCCCCceEEecCC
Q 006976 401 HPQIKKGTTD----SSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDAN-HDFVLPQPPFDIQPPDIIHQITSLTNP 475 (623)
Q Consensus 401 h~~i~~g~~~----~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~-~~~v~PQpp~~~~~~~l~~~v~~~~NP 475 (623)
|++|+.|.+. .+++|+|.+.|. -+++.+ ..-+.|||||+.|+. .|.+|||.||.+....+|.|++|++||
T Consensus 351 h~li~~G~~~~t~~~~l~ElF~~r~t----piL~~~-~~p~~vLIPstnDa~s~h~a~PQ~~~~r~al~lp~nfkC~~NP 425 (581)
T COG5214 351 HILIQYGATQSTPDSMLKELFIPRIT----PILDRN-AGPKAVLIPSTNDATSCHNAFPQGPIGRNALRLPSNFKCTGNP 425 (581)
T ss_pred hhhhhhCCCCCCChhHHHHHHHHhhh----HHHhcc-CCCceEEeccccchhhccccCCccccchhhhcCCccccccCCc
Confidence 9999998764 567777776444 344333 345899999999998 467899999999988999999999999
Q ss_pred cEEEECCEEEEeechHHHHhhhhhhcccCCCCCCcchhHHHHHHhhhccccccccccCCCCCC-----ccccchhccccc
Q 006976 476 GTFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRMEIYSLDISLMGPAFFFYPLYPPAE-----GIPLDFSLAQEA 550 (623)
Q Consensus 476 ~~~~in~v~igvts~Dvl~~L~~~ei~~~~~~~~~~dr~~rl~~hi~~l~~QrsfyPl~P~~~-----~~~lD~~~~~~~ 550 (623)
|.|+||++.|||++.|++.|+++||+.+... ..+++|+.|+..|+ | +||+|||+||+.. ...+|..++...
T Consensus 426 c~F~INei~fg~Ss~Dt~l~~s~eE~f~~~l-~s~g~rl~Ris~H~--l-~QR~fyPvFPg~~~~k~~ps~ldv~~l~l~ 501 (581)
T COG5214 426 CEFFINEILFGISSLDTPLEISSEECFHDSL-LSGGDRLGRISYHL--L-FQRTFYPVFPGGSLEKCNPSSLDVVSLSLP 501 (581)
T ss_pred ceeEeeeeEEEeccCCchhhccHHHHhcccc-ccccchHHHHHHHH--H-hhceeecccCCccccccCccccceEEecch
Confidence 9999999999999999999999999998542 35689999999999 9 9999999999742 246777666555
Q ss_pred ccCC-CCCcEEEcCCCCcceEEEecCCCCCCccccceEEEEcCCccccCCCCceEEEEEEcC
Q 006976 551 LTIS-TIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEGSGTFAEIYYHG 611 (623)
Q Consensus 551 l~l~-~~PDILIlPS~l~~F~k~v~~~~~~~~~~~~~~v~INPG~l~k~~~~Gtya~l~v~~ 611 (623)
..+. ..|||+|+||+|+||+|+|.+ +|+||||.++|+...|+||+|++.|
T Consensus 502 Ef~~~t~PDI~IvpS~L~hF~r~V~n-----------vVvvNpG~~~k~tn~g~~a~it~~p 552 (581)
T COG5214 502 EFMSMTAPDIYIVPSKLKHFCRDVGN-----------VVVVNPGLQAKETNEGIAAHITLPP 552 (581)
T ss_pred hhhccCCCcEEEehHHHHHHHHhcCc-----------eEEECcchhhhhccccceEEEecCc
Confidence 5555 899999999999999999965 9999999999999899999999985
No 3
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=100.00 E-value=7.6e-40 Score=325.16 Aligned_cols=202 Identities=37% Similarity=0.678 Sum_probs=149.4
Q ss_pred EEEEeCCCcCCCCCCchHHHHHHHHHH-ccCCcEEEEeCcccCCCCccccCCCc--cccHHHHHHHHHHHHHHHHHHhcC
Q 006976 357 MIIAAGPFTTTDNLYFEPLKELISYAK-RKQPQLLILLGPFVDSEHPQIKKGTT--DSSFDEIFHLEILRRLQDYVEYMG 433 (623)
Q Consensus 357 I~vAsGPft~~d~l~~epL~~ll~~~~-~~~PdvlIL~GPFvD~~h~~i~~g~~--~~t~~~lF~~~il~~l~~~~~~~~ 433 (623)
|+||||||+.++++.|++|.+|++++. ..+|++|||+|||+|..|+.+..+++ ..++.+.|.+++ .++++.+.
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~ 76 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKEL----DSFLESIL 76 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHC----HHHHCCCH
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHH----HHHHhhcc
Confidence 799999999999999999999999999 99999999999999999998877765 445555444333 44444455
Q ss_pred CceEEEEecCCCCCCCCCCCCCCCCCCCCCC-CCC--ceEEecCCcEEEECCEEEEeechHHHHhhhhhhcccCCCCCCc
Q 006976 434 SEVRAILVPSIRDANHDFVLPQPPFDIQPPD-IIH--QITSLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTS 510 (623)
Q Consensus 434 ~~~~VvlVPS~rD~~~~~v~PQpp~~~~~~~-l~~--~v~~~~NP~~~~in~v~igvts~Dvl~~L~~~ei~~~~~~~~~ 510 (623)
++++|+||||.+|+++..+||||||+...+. ..+ ++++++|||+|++||+.||+++.|++.+|+++++.++.. .
T Consensus 77 ~~~~vvlvPg~~D~~~~~~lPq~pl~~~~~~~~~~~~~~~~~sNP~~~~i~~~~i~~~s~d~~~~l~~~~~~~~~~---~ 153 (209)
T PF04042_consen 77 PSTQVVLVPGPNDPTSSPVLPQPPLHSKLFPKLKKYSNIHFVSNPCRISINGQEIGVTSGDILDDLRRYEISKSSS---S 153 (209)
T ss_dssp CCSEEEEE--TTCTT-S-SCSB----TTTTCHHCTTTTEEE--CSEEEEETTEEEEE-SSHHHHHHHHCCESHHHH---H
T ss_pred cccEEEEeCCCccccccCCCCCCCCCHHHHhhhhhcCceEEeCCCeEEEEeCCcEEEECCcHHHHHHhhccCCCcc---h
Confidence 7999999999999998789999999988652 222 399999999999999999999999999999999987542 4
Q ss_pred chhHHHHHHhhhccccccccccCCC-CCCccccchhcccccccCCCCCcEEEcCCCCcceEE
Q 006976 511 NDRMEIYSLDISLMGPAFFFYPLYP-PAEGIPLDFSLAQEALTISTIPDIIILPSDMKYFIK 571 (623)
Q Consensus 511 ~dr~~rl~~hi~~l~~QrsfyPl~P-~~~~~~lD~~~~~~~l~l~~~PDILIlPS~l~~F~k 571 (623)
.|++.|+++|| | +||||||++| ... ++++++ .+.+.++.+|||||+||.+++|+|
T Consensus 154 ~~~~~~l~~~i--l-~q~hl~P~~pd~~~--~~~~~~-~~~l~l~~~Pdili~~~~~~~F~~ 209 (209)
T PF04042_consen 154 EDRIERLMETI--L-QQRHLYPLYPDTLP--PIPWSY-DDPLVLDPTPDILILPSDLPPFVK 209 (209)
T ss_dssp S-HHHHHHHHH--H-HCTBS-TTSSE--B---GGGGG-CGCTCGCS--SEEEEEESCSSEE-
T ss_pred hHHHHHHHHHH--H-HhhcccCCCCCCcc--ccccCc-CCCcccCCCCcEEEECCCCcCcCC
Confidence 68999999999 9 9999999999 434 444443 357888999999999999999986
No 4
>PF08418 Pol_alpha_B_N: DNA polymerase alpha subunit B N-terminal; InterPro: IPR013627 This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation []. ; PDB: 4E2I_9 2KEB_A 3FLO_G.
Probab=100.00 E-value=3.6e-36 Score=308.34 Aligned_cols=221 Identities=24% Similarity=0.307 Sum_probs=81.2
Q ss_pred cCCCCCChHHHHHHHHHHHHHcCCChhHHHHHHhhhhhhccCCCCCCChhhHHHHHHHHHHHHHHhhhccCC----cccc
Q 006976 12 NGFNFVDEGEVLKKCLTFCINYNLKPSDLVSSWEVYYLNRQLDESTVKDDEMDGFMLHLQNEQKEAIIKEEP----SLHI 87 (623)
Q Consensus 12 fG~~~~~~~~vl~kc~~lc~~y~l~~~dlv~~Weafs~~~~~~~~~l~~~nL~~F~~~l~~~~~~~~~~~~~----~~~~ 87 (623)
||++++++++|++||++||++|+|+++|||.+|||||++++++++.|++++|++|+++||++++++..+..+ ....
T Consensus 1 Fg~~~~~~~~vl~kl~slc~~~~ls~edL~~kWeaf~~~~~~~~~~l~~~~L~~F~~~lq~~~~k~~~~~~~~~~~~~~~ 80 (253)
T PF08418_consen 1 FGPSCDLDPDVLEKLQSLCRLYNLSAEDLFYKWEAFSLNMQLDDTKLTLDNLDQFKQYLQDQLEKKSRKKTSTKTSKRSS 80 (253)
T ss_dssp TT-B----HHHHHHHHTHHHHST--HHHHHHHHTTHHHHTT-SC----TTTTTGGGTTTSGGG-SST-------------
T ss_pred CCCccCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCCcCcCCHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 899998788999999999999999999999999999999988877899999999999999988765433211 1111
Q ss_pred ccCccccccccc-cchh-hh--cccCCCCCCCC-CcCC-------C----CCCccccCCCCCC-C-CCC------CCCCc
Q 006976 88 YSSKDVDMILND-EDEN-IA--EDILGTPPDNL-KLYS-------D----ALDSTYKANANGY-S-SDK------PSKLV 143 (623)
Q Consensus 88 ~~~~~~~~~~~~-~~~~-~~--~~~~~tP~~~~-k~~~-------~----~~~~~~~~~~~~~-~-~~~------~~~~~ 143 (623)
.+.....++... .... .. .+.+.||..++ |... . .+.+++..++... . +++ +..++
T Consensus 81 ~~~~~~~~~~~~~~~~~d~~~~~~~~~TP~~kk~k~~~~~~~~~~~~~~~~~~SP~s~~~~~~~~~~~~~~~~~~~~~~~ 160 (253)
T PF08418_consen 81 ASPRAKPPALRSYGSPSDVFGMLDIPSTPSLKKRKLNRSSFSSSSAPSPSVFSSPSSSSPSSANSSSSPNSPTTPSAPPS 160 (253)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCccccccccccccccccccchhcCCCCCCCCCCCcccccccccccCCCCCCCCCCCcCcccCCCccccccccccccccc
Confidence 111111111111 0000 00 13467999887 4411 0 1222221111000 0 000 01245
Q ss_pred CCCccccCCceEEEecCCCCCC--CCCCCCCCCCCchhhhhhhcccCCccceeecCCCCCCccchhhhcHHHHHHHHHHH
Q 006976 144 TPFGRRTEKLVVKFNINNLPNT--ENGCIEHDDENTEDDIIKRIKTGKKCSLMVHGSGPEPGCRFMYDRTEDRFNALENR 221 (623)
Q Consensus 144 ~~~~~r~~~g~v~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~M~~kl~~r~~~L~~r 221 (623)
++|+.|+|+|+||++||+|... +++.... ...++.+..+.+.++++||||||||.||+++||+|
T Consensus 161 ~~~~~R~n~G~vvetlN~~l~~~~~~~~~~~--------------~~~~v~l~~~~d~~k~~yr~M~~kL~e~sevLDdr 226 (253)
T PF08418_consen 161 SPFSSRTNAGEVVETLNPHLPEIAEGPIAPD--------------SESRVKLTANFDPKKYKYRYMFQKLSERSEVLDDR 226 (253)
T ss_dssp -----------------------------------------------------------------S---HHHHHHHHHHH
T ss_pred ccccccCCCCCeeEecCCccccccccCCCCC--------------CCccccccCCCCccccCchHHHHHHHHHHHHHHHH
Confidence 7899999999999999999443 3322221 12346677888999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCC--CCCCCCcccC
Q 006976 222 IRKHANALVSSGLYE--EPTDPTVASQ 246 (623)
Q Consensus 222 I~~~~~~~~~~~~~~--~~~~~~~~s~ 246 (623)
|++|++++++||+++ +|++|+++||
T Consensus 227 Id~f~~~iq~~~~~~~~~fg~p~~~Sq 253 (253)
T PF08418_consen 227 IDEFAELIQEHYKLEDSEFGNPAIQSQ 253 (253)
T ss_dssp HHHHHHHHHHHHT--GGGB--TTS--S
T ss_pred HHHHHHHHHHHhCCcccccCCcCcCCC
Confidence 999999999999998 7999999987
No 5
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=99.97 E-value=3.7e-30 Score=270.78 Aligned_cols=367 Identities=19% Similarity=0.299 Sum_probs=267.4
Q ss_pred cchhhhcHHHHHHHHHHHHHHHH---HH------HH--HcCCCCCCCCCC-cccCccEEEEEEEEECCCCCCCCceEEEe
Q 006976 204 CRFMYDRTEDRFNALENRIRKHA---NA------LV--SSGLYEEPTDPT-VASQRTLFAVGMICCDGDGHLNDKSVLLQ 271 (623)
Q Consensus 204 ~r~M~~kl~~r~~~L~~rI~~~~---~~------~~--~~~~~~~~~~~~-~~s~~~v~vvGrI~~d~egkLn~~sv~LE 271 (623)
+--|+. .|..++.+|+-+.. .- .+ +..++....+.. ...-.++++.|++..-.+|++ .||
T Consensus 125 ks~m~~---~Ry~i~~qR~mR~e~Fq~pv~~s~~~~q~~~fklt~ienLL~t~~~~~~lvLGlLTq~k~G~~-----~lE 196 (525)
T KOG3818|consen 125 KSDMFR---QRYFIVKQRTMRNELFQPPVSGSGRCAQLKKFKLTPIENLLSTRALQSFLVLGLLTQLKEGKF-----HLE 196 (525)
T ss_pred HHHHHH---HHHHHHHHHHHhhhccCCCccCCchhhhccccceeEHHHhhccccccceeeeehhhhccCCcE-----EEe
Confidence 444555 89999999987721 10 00 111111112211 344567999999999999975 899
Q ss_pred eccCCCCCeEEEeecCCCC-ccccc-CCCEEEEEeecCCCCeEEEeEeccCCCCCCCccccCCCchhhhhhhh---c---
Q 006976 272 SSVEHSGGQRVRLDLHKLG-EFSLF-PGQVVGIEGSNPSGHCLIASKLVDQIPLPVDAVVDVHPSMKQALDQE---I--- 343 (623)
Q Consensus 272 ~s~~~~~G~rV~Ldls~l~-~~slF-PGQIV~v~G~n~~G~~f~V~ei~~~~Pl~~~~~~~~p~~~~~~~~~~---~--- 343 (623)
+. +| .|.||+++.+ +..|| ||++|.++|...+ +.|.|.++- .|+-+++ +. .+.++... .
T Consensus 197 Dp----sg-sVqlDlsqa~fh~glf~egC~VL~EG~f~~-~vf~V~~lg--~PP~E~~--~~---tr~~~gN~n~~Gg~~ 263 (525)
T KOG3818|consen 197 DP----SG-SVQLDLSQAKFHHGLFCEGCFVLVEGTFES-GVFHVNELG--FPPVERR--EV---TRKELGNLNWLGGDS 263 (525)
T ss_pred CC----CC-cEEEeecccccccceeccceEEEEeeeeec-ceEEEeecc--CCCCCcc--hh---HHHHhccCcccCCcc
Confidence 63 45 8999999976 66888 9999999999987 699999995 5554443 11 11111000 0
Q ss_pred ----------cccccccCCCCeEEEEEeCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccH
Q 006976 344 ----------HSTVVISRPEEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSF 413 (623)
Q Consensus 344 ----------~~~~~~~~~~~l~I~vAsGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~ 413 (623)
++++ ....+.++++.|..|. +|--.++.|..+++++++..|-.+||||+|..+.-- ++ --..+
T Consensus 264 ~~~~k~sA~L~~lE--~~~~d~~fVfLSdV~L-D~~~vm~aL~kifqgy~~~pP~~iIlcG~FtS~p~~--~~--s~~~~ 336 (525)
T KOG3818|consen 264 KIAFKCSARLRSLE--AENTDTSFVFLSDVFL-DDKKVMEALRKIFQGYKDAPPTAIILCGSFTSSPRQ--TS--SSDQL 336 (525)
T ss_pred hhhhHHHHHHHHHH--HhCcCceEEEEehhcc-ccHHHHHHHHHHHhhccCCCCeEEEEeccccccccc--cc--hHHHH
Confidence 0000 1124667888899987 566678999999999999999999999999886421 11 11235
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCCCCCCCCCCCCCCCCC----CCCCceEEecCCcEEEECCEEEEeec
Q 006976 414 DEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLPQPPFDIQPP----DIIHQITSLTNPGTFEANQIKVGCCT 489 (623)
Q Consensus 414 ~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~~~~v~PQpp~~~~~~----~l~~~v~~~~NP~~~~in~v~igvts 489 (623)
.+-|+. +...|..+-. .-..|++|+||+..|+....++|+||++.... ..-++..|.+|||+|.+....|.|..
T Consensus 337 k~~f~~-LA~~l~~~~~-~~ekT~fIFVPGP~Dp~~~~iLPr~piP~~~~~~i~kv~~~tvfasNPcRIqy~sQEIvVfR 414 (525)
T KOG3818|consen 337 KDGFRW-LAAQLTCFRK-DYEKTQFIFVPGPNDPWVDNILPRPPIPSLFTKHISKVCKNTVFASNPCRIQYCSQEIVVFR 414 (525)
T ss_pred HHHHHH-HHhhcccccc-ccccceEEEecCCCCCCcCccCCCCCchHHHHHHHHhhcCCceeccCCeeeEeecceEEEEh
Confidence 555553 3322211111 11469999999999999889999999997543 22368899999999999999999999
Q ss_pred hHHHHhhhhhhcccCCCCCCcchhHHHHHHhhhccccccccccCCCCCCccccchhcccccccCCCCCcEEEcCCCCcce
Q 006976 490 VDVLKQLSGEEMSRCSKDGTSNDRMEIYSLDISLMGPAFFFYPLYPPAEGIPLDFSLAQEALTISTIPDIIILPSDMKYF 569 (623)
Q Consensus 490 ~Dvl~~L~~~ei~~~~~~~~~~dr~~rl~~hi~~l~~QrsfyPl~P~~~~~~lD~~~~~~~l~l~~~PDILIlPS~l~~F 569 (623)
.|+...++++.+.... .....-.++++.| | .|.|+.|+-+...++.||+++ +|++...||.|++......|
T Consensus 415 ~DL~~kfcRn~l~Fp~---~~~qipq~~vkTI--L-~QgHLsP~p~~~~PV~WD~D~---aLsl~PlPdlmvl~Ds~~sf 485 (525)
T KOG3818|consen 415 DDLSGKFCRNSLNFPI---TVEQIPQHLVKTI--L-DQGHLSPFPQHIRPVLWDFDH---ALSLYPLPDLMVLADSFSSF 485 (525)
T ss_pred HhhhhHHhhccccCCC---cHHHHHHHHHHHH--h-hccccCCCccccCccccCccc---ceEeccCcceEEeecccccc
Confidence 9999999998876532 2344667899999 9 999999997777788999987 68999999999999999999
Q ss_pred EEEecCCCCCCccccceEEEEcCCccccCCCCceEEEEEEcCCcccccceeeeC
Q 006976 570 IKVLSLGGRNEGEEQKKCVCVNPGRLAKGEGSGTFAEIYYHGSPEMMNASIISI 623 (623)
Q Consensus 570 ~k~v~~~~~~~~~~~~~~v~INPG~l~k~~~~Gtya~l~v~~~~~~~~a~~~~i 623 (623)
..+. ++||.|||||.|.+. .|+-..+-|...++.++=+.|
T Consensus 486 ~~vt----------~~gC~v~NPGSF~~s----~~~f~vy~P~~k~ve~sei~i 525 (525)
T KOG3818|consen 486 FDVT----------YAGCIVINPGSFSRS----NYTFKVYYPSQKTVEDSEIPI 525 (525)
T ss_pred cccc----------cCCceeeCCCccccc----ceeEEEEecccceeeccccCC
Confidence 8854 379999999999993 677777888888887775543
No 6
>PRK04036 DNA polymerase II small subunit; Validated
Probab=99.96 E-value=7.4e-27 Score=260.77 Aligned_cols=338 Identities=17% Similarity=0.264 Sum_probs=236.9
Q ss_pred CccchhhhcHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcc-cCccEEEEEEEEECCCCCCCCceEEEeeccCCCCCe
Q 006976 202 PGCRFMYDRTEDRFNALENRIRKHANALVSSGLYEEPTDPTVA-SQRTLFAVGMICCDGDGHLNDKSVLLQSSVEHSGGQ 280 (623)
Q Consensus 202 ~~~r~M~~kl~~r~~~L~~rI~~~~~~~~~~~~~~~~~~~~~~-s~~~v~vvGrI~~d~egkLn~~sv~LE~s~~~~~G~ 280 (623)
..|+.++.-..+|.+.|..+|..-++.- .++... ... .+++++++|+|..-.+.+=+...++||+ ..|
T Consensus 114 ~~~~~~~~~y~~R~~~L~~~l~~~~~~~----~i~~l~--~~~~~~~~~~viG~v~~~~~~~~g~~~~~LED----~sg- 182 (504)
T PRK04036 114 GEVEDFVAYFRDRYEKLSKIIRGRVNHR----PIESLK--KLKRGGEEVSIIGMVSDIRSTKNGHKIVELED----TTG- 182 (504)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhcccc----cHHHHh--cCccCCceEEEEEEEEEeecccCCceEEEEEC----CCC-
Confidence 3455555555599999988888754321 111111 222 5688999999973222111122689995 456
Q ss_pred EEEeecCCCC----c--ccccCCCEEEEEeecCC-CCeEEEeEeccCCCCCCCccccCCCchhhhhhhhccccccccCCC
Q 006976 281 RVRLDLHKLG----E--FSLFPGQVVGIEGSNPS-GHCLIASKLVDQIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPE 353 (623)
Q Consensus 281 rV~Ldls~l~----~--~slFPGQIV~v~G~n~~-G~~f~V~ei~~~~Pl~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 353 (623)
||+|.+++-. . -.|++|+||||+|+..+ |+.|.|.+|+++ ++|... +.. ...+
T Consensus 183 rv~l~~~~~~~~~~~~~~~lvtg~vv~v~G~~~~~g~~f~v~~i~~p-~~p~~~----~~~---------------~~~~ 242 (504)
T PRK04036 183 TFPVLIMKDREDLAELADELLLDEVIGVEGTLSGDGGLIFADEIIRP-DVPRTK----EPP---------------TKDE 242 (504)
T ss_pred eEEEEeecchhhhhhhhhcccCceEEEEEEEEcCCCCEEEEEEEECC-CCCccC----CCC---------------cCCC
Confidence 9999985322 2 36899999999999654 449999999964 222210 110 1135
Q ss_pred CeEEEEEeCCCcCCCCCCchHHHHHHHHHH---------ccCCcEEEEeCcccCCCCccccCCC-ccccHHHHHHHHHHH
Q 006976 354 EISMIIAAGPFTTTDNLYFEPLKELISYAK---------RKQPQLLILLGPFVDSEHPQIKKGT-TDSSFDEIFHLEILR 423 (623)
Q Consensus 354 ~l~I~vAsGPft~~d~l~~epL~~ll~~~~---------~~~PdvlIL~GPFvD~~h~~i~~g~-~~~t~~~lF~~~il~ 423 (623)
+.+|++.||.+..++......|+.|++|++ ..+|+.||++|+++|..++.- ++ -+....++|+. ++
T Consensus 243 ~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p--~~~~~~~~~~~~~~--~~ 318 (504)
T PRK04036 243 KVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYP--GQEEELEIVDIYEQ--YE 318 (504)
T ss_pred ccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCc--cchhhccchhhHHH--HH
Confidence 678999999998777666777899999998 678999999999999755321 11 11122334442 23
Q ss_pred HHHHHHHhcCCceEEEEecCCCCCCCCCCCCCCCCCCCCC-CCC-CceEEecCCcEEEECCEEEEeechHHHHhhhhhhc
Q 006976 424 RLQDYVEYMGSEVRAILVPSIRDANHDFVLPQPPFDIQPP-DII-HQITSLTNPGTFEANQIKVGCCTVDVLKQLSGEEM 501 (623)
Q Consensus 424 ~l~~~~~~~~~~~~VvlVPS~rD~~~~~v~PQpp~~~~~~-~l~-~~v~~~~NP~~~~in~v~igvts~Dvl~~L~~~ei 501 (623)
.+.++++.++.++.|++||+.+|... ..+||||++..+. .++ .++++++||+.+.++|..|.+++.+.+.++.+. +
T Consensus 319 ~l~~~L~~L~~~i~V~~ipGNHD~~~-~~lPQ~~l~~~l~~~l~~~~v~~lsNP~~i~l~G~~iLl~HG~~idDl~~~-i 396 (504)
T PRK04036 319 AAAEYLKQIPEDIKIIISPGNHDAVR-QAEPQPAFPEEIRSLFPEHNVTFVSNPALVNLHGVDVLIYHGRSIDDVISL-I 396 (504)
T ss_pred HHHHHHHhhhcCCeEEEecCCCcchh-hccCCCCccHHHHHhcCcCCeEEecCCeEEEECCEEEEEECCCCHHHHHhh-c
Confidence 34455555557889999999999975 6899999987642 233 489999999999999999999997766665422 1
Q ss_pred ccCCCCCCcchhHHHHHHhhhccccccccccCCCCCCccccchhcccccccCCCCCcEEEcCCCCcceEEEecCCCCCCc
Q 006976 502 SRCSKDGTSNDRMEIYSLDISLMGPAFFFYPLYPPAEGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEG 581 (623)
Q Consensus 502 ~~~~~~~~~~dr~~rl~~hi~~l~~QrsfyPl~P~~~~~~lD~~~~~~~l~l~~~PDILIlPS~l~~F~k~v~~~~~~~~ 581 (623)
.. ...+....+++++ + .|||++|.+|... ++-+. ..+.+.++..|||+++++.-.++.+.+
T Consensus 397 ~~-----~s~~~p~~~m~~~--l-~~rHlaPt~p~~~--~~~p~-~~D~lvi~~~Pdv~~~GH~H~~~~~~~-------- 457 (504)
T PRK04036 397 PG-----ASYEKPGKAMEEL--L-KRRHLAPIYGGRT--PIAPE-KEDYLVIDEVPDIFHTGHVHINGYGKY-------- 457 (504)
T ss_pred cc-----ccccCHHHHHHHH--H-HhcccCCCCCCCE--EeCcC-CCCCEEEecCCCEEEeCCCCccceEEE--------
Confidence 11 1245667899999 9 9999999999854 33332 357889999999999999988888877
Q ss_pred cccceEEEEcCCccccC
Q 006976 582 EEQKKCVCVNPGRLAKG 598 (623)
Q Consensus 582 ~~~~~~v~INPG~l~k~ 598 (623)
.||++||||.|+..
T Consensus 458 ---~g~~~IN~gsf~~~ 471 (504)
T PRK04036 458 ---RGVLLINSGTWQAQ 471 (504)
T ss_pred ---CCEEEEECCccccc
Confidence 45999999999875
No 7
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=99.87 E-value=3.5e-21 Score=198.04 Aligned_cols=234 Identities=19% Similarity=0.239 Sum_probs=172.8
Q ss_pred CCCeEEEEEeCCCcCCCCCCchHHHHHHHHHH-c----cCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHH-HH
Q 006976 352 PEEISMIIAAGPFTTTDNLYFEPLKELISYAK-R----KQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILR-RL 425 (623)
Q Consensus 352 ~~~l~I~vAsGPft~~d~l~~epL~~ll~~~~-~----~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~-~l 425 (623)
....+++|.|.-|- |+.-..+.|..+++.+. . ..|-+.||||+|.... ....+.....+.+-|++ +.. .|
T Consensus 25 ~~~~~~VilSDV~L-D~p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p--~~~~~~~~~~yk~~Fd~-La~lll 100 (291)
T PTZ00235 25 DKRHNWIIMHDVYL-DSPYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLK--FDYNRNFHKVYIKGFEK-LSVMLI 100 (291)
T ss_pred CCceEEEEEEeecc-CCHHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCc--ccCCCCchHHHHHHHHH-HHHHHH
Confidence 45668888888876 56778999999999884 3 4599999999998653 22222223346666665 322 23
Q ss_pred HHHHHhcCCceEEEEecCCCCCC-CCCCCCCCCCCCCCC-----------CCCCceEEecCCcEEEECCEEEEeechHHH
Q 006976 426 QDYVEYMGSEVRAILVPSIRDAN-HDFVLPQPPFDIQPP-----------DIIHQITSLTNPGTFEANQIKVGCCTVDVL 493 (623)
Q Consensus 426 ~~~~~~~~~~~~VvlVPS~rD~~-~~~v~PQpp~~~~~~-----------~l~~~v~~~~NP~~~~in~v~igvts~Dvl 493 (623)
.++-. +-+++++||||+..|+. +..++||+|++.... ..++++++.+|||++++-+..|.+...|++
T Consensus 101 s~fp~-L~~~s~fVFVPGpnDPw~s~~~LPR~PIp~~f~~~~~~~~e~~~~~~~~~i~aSNPcRI~y~sqEIVifRdDl~ 179 (291)
T PTZ00235 101 SKFKL-ILEHCYLIFIPGINDPCACKNSIPKMPILPYYIRKFKQNIESFFSSKRNIIFATNPCRIRHLSKKMIFFRHDIL 179 (291)
T ss_pred HhChH-HHhcCeEEEECCCCCCCcCcccCCCCCchHHHHHHHHHhhhhccCCCCceEEecCCcEEEecCceEEEEeHHHH
Confidence 33322 22699999999999995 357999999886321 123589999999999999999999999999
Q ss_pred HhhhhhhcccCCCCCCcchhHHHHHHhhhccccccccccCCCCCCccccchhcccccccCCCCCcEEEcCCC-CcceEEE
Q 006976 494 KQLSGEEMSRCSKDGTSNDRMEIYSLDISLMGPAFFFYPLYPPAEGIPLDFSLAQEALTISTIPDIIILPSD-MKYFIKV 572 (623)
Q Consensus 494 ~~L~~~ei~~~~~~~~~~dr~~rl~~hi~~l~~QrsfyPl~P~~~~~~lD~~~~~~~l~l~~~PDILIlPS~-l~~F~k~ 572 (623)
.+|++.-+...+. ....|.-.++++.| | .|.|+.|+ |....+.|++++ +|++...||+||+... ..+|++.
T Consensus 180 ~~L~r~~~i~~~~-~~~~d~~~~lvkTI--l-dQ~HL~Pl-~~~~pI~W~yD~---aL~LyPlPd~ivL~D~s~~~~~~~ 251 (291)
T PTZ00235 180 NDLIWSSTINATN-NERNNLQNILVSTI--V-GQSHIYPI-PHDNRILKRYSP---FLFLYPLPHFICVCDNSCNSFISY 251 (291)
T ss_pred HHHhhhccCCCCC-ccchhHHHHHHHhh--h-cccccCCC-ccCCcccccccc---ceeccCCCCEEEEecCCCCcccee
Confidence 9999765322211 12345666999999 9 99999999 455668888875 6999999999999988 7888765
Q ss_pred ecCCCCCCccccceEEEEcC-CccccCCCCceEEEEE
Q 006976 573 LSLGGRNEGEEQKKCVCVNP-GRLAKGEGSGTFAEIY 608 (623)
Q Consensus 573 v~~~~~~~~~~~~~~v~INP-G~l~k~~~~Gtya~l~ 608 (623)
-. ....+|+|+|| |+|+|+ |||....
T Consensus 252 ~~-------~~~~~~~~~Np~gsF~~~---~sF~~Y~ 278 (291)
T PTZ00235 252 AS-------EDTSDCIISNSDMSFTRK---KTFTVYS 278 (291)
T ss_pred ec-------ccCCceEEECCCCccCCC---ceEEEEe
Confidence 21 12357999999 599996 5776544
No 8
>KOG2732 consensus DNA polymerase delta, regulatory subunit 55 [Replication, recombination and repair]
Probab=99.86 E-value=1.3e-19 Score=190.77 Aligned_cols=348 Identities=16% Similarity=0.202 Sum_probs=250.7
Q ss_pred chhhhcHHHHHHHHHHHHHHHHHHHHHcCCCCCC-CCCCcccCc-cEEEEEEEEECCCCC--------------------
Q 006976 205 RFMYDRTEDRFNALENRIRKHANALVSSGLYEEP-TDPTVASQR-TLFAVGMICCDGDGH-------------------- 262 (623)
Q Consensus 205 r~M~~kl~~r~~~L~~rI~~~~~~~~~~~~~~~~-~~~~~~s~~-~v~vvGrI~~d~egk-------------------- 262 (623)
|.+|+-+..|...|..||.+.|+ ++|+...-. +-.....++ ++||||.|++...-|
T Consensus 27 ~Qy~~iY~aRL~elRp~i~~~A~--k~wg~~~~l~~~l~l~~~~~~C~vVGTlfk~~~lKPsIl~~v~~e~~~~p~~~~~ 104 (435)
T KOG2732|consen 27 RQYFHIYFARLKELRPRILELAQ--KKWGSGPPLKKQLDLEKGKGECWVVGTLFKAMALKPSILDEVSNEHKVAPDPEES 104 (435)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH--hhcCCCCchhhheeeccCCccEEEEEehhhhcccCcHHHHHHhhhhccCCCCccc
Confidence 66777777999999999999994 445432221 334555666 999999999743222
Q ss_pred ---CCCceEEEeeccCCCCCeEEEeecCCCCcccccCCCEEEEEeecCCCCeEEEeEeccCCCCCCCccccCCCchhhhh
Q 006976 263 ---LNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASKLVDQIPLPVDAVVDVHPSMKQAL 339 (623)
Q Consensus 263 ---Ln~~sv~LE~s~~~~~G~rV~Ldls~l~~~slFPGQIV~v~G~n~~G~~f~V~ei~~~~Pl~~~~~~~~p~~~~~~~ 339 (623)
--+..++||+ +.| ||+|..+.+...-+-.|.+|||.|+-...+.|.|..++++-+.|. ..|.+
T Consensus 105 ~y~~ped~i~LED----e~g-rV~L~G~~i~~~~~vTGvvvavlG~~~e~G~F~VeDv~fp~~~pq----~~P~~----- 170 (435)
T KOG2732|consen 105 NYHSPEDEIVLED----ESG-RVRLEGSFISHAVLVTGVVVAVLGKEAEAGRFLVEDVLFPGSSPQ----GKPRA----- 170 (435)
T ss_pred ccCCccceEEEec----CCc-eEEEEeecccccceeeeEEEEEecccccCceEEEEEEeccCCCcc----CCCCC-----
Confidence 1345678884 456 999999999999999999999999999889999999997544332 12221
Q ss_pred hhhccccccccCCCCeEEEEEeCCCcCCCCCCchHHHHHHHHHHc----------cCCcEEEEeCcccCCCCcccc----
Q 006976 340 DQEIHSTVVISRPEEISMIIAAGPFTTTDNLYFEPLKELISYAKR----------KQPQLLILLGPFVDSEHPQIK---- 405 (623)
Q Consensus 340 ~~~~~~~~~~~~~~~l~I~vAsGPft~~d~l~~epL~~ll~~~~~----------~~PdvlIL~GPFvD~~h~~i~---- 405 (623)
.....-.|+++||-=-..++.+-+.|+-|.+|++- ...+-||++|+.++..-..+.
T Consensus 171 ----------~~~~~~~i~lVSGL~l~~~~~~~~~l~~l~D~l~g~lg~e~~~~~~~i~rliv~Gn~l~~~~~~~~~~~~ 240 (435)
T KOG2732|consen 171 ----------TLPSQRKIALVSGLDLGGGSKNLLRLELLVDWLRGQLGNEYEQSASSIGRLIVAGNSLSFSIKILDSQST 240 (435)
T ss_pred ----------cCCCCCEEEEEeccccCCCcchhHHHHHHHHHHhcccCccccccccccceEEEeccccchhhhcccccee
Confidence 11233479999999777777777777777777752 235789999999986543321
Q ss_pred ------CCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCCCCCCCCCCCCCCCCC-CC---CCceEEecCC
Q 006976 406 ------KGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLPQPPFDIQPP-DI---IHQITSLTNP 475 (623)
Q Consensus 406 ------~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~~~~v~PQpp~~~~~~-~l---~~~v~~~~NP 475 (623)
+++...++..++ .|.+++..++.++.|-++|++.|+.+ ..+||+||++..+ .. .+.++.++||
T Consensus 241 ~~~~~~~~~~~~~~~~v~------~ld~~L~~~~~s~~VdimPG~~Dp~~-~~lPqqPlh~~lfp~s~~~~~~~q~vTNP 313 (435)
T KOG2732|consen 241 SISRLTKKDSAASVIPVK------ELDNFLAQIPASISVDIMPGVNDPSN-FMLPQQPLHRCLFPKSPQSLSTLQLVTNP 313 (435)
T ss_pred eeeeccccccccccccHH------HHHHHHHhccccCCccCCCCCCChhh-ccCCcCCcchhhhccCccccchhhcccCc
Confidence 223334444442 34455555667899999999999996 8999999999876 21 2469999999
Q ss_pred cEEEECCEEEEeechHHHHhhhhhhcccCCCCCCcchhHHHHHHhhhccccccccccCCCCCCccccchhcccccccCCC
Q 006976 476 GTFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRMEIYSLDISLMGPAFFFYPLYPPAEGIPLDFSLAQEALTIST 555 (623)
Q Consensus 476 ~~~~in~v~igvts~Dvl~~L~~~ei~~~~~~~~~~dr~~rl~~hi~~l~~QrsfyPl~P~~~~~~lD~~~~~~~l~l~~ 555 (623)
..|++||+.|+.+|...+.+|.+--.- ..+++- ++.. | .+||..|--|.... ++-+.. ++.+.|+.
T Consensus 314 y~~~ld~~~vl~tSGqNvsDl~ry~~~--------~s~ld~-le~t--l-kw~HvaPTaPDTL~-cyPfte-kDPFv~~~ 379 (435)
T KOG2732|consen 314 YEFSLDGARVLGTSGQNVSDLLRYSSK--------KSGLDA-LENT--L-KWGHVAPTAPDTLW-CYPFTE-KDPFVMDE 379 (435)
T ss_pred eEEEEcCEEEEecCCccHHHHhhhcch--------hhHHHH-Hhhh--h-eeccccCCCCCccc-cccccc-CCCeeecC
Confidence 999999999999999999998853211 234443 4445 5 89999999887543 233332 46789999
Q ss_pred CCcEEEcCCCCcceEEEecCCCCCCccccceEEEEcCCccccCCCCceEEEEEE
Q 006976 556 IPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEGSGTFAEIYY 609 (623)
Q Consensus 556 ~PDILIlPS~l~~F~k~v~~~~~~~~~~~~~~v~INPG~l~k~~~~Gtya~l~v 609 (623)
.|||++++..-+.=.|.+.+ + -+.|++|.-..|+|. |.-+-+..
T Consensus 380 ~Phvy~~GNqp~f~~r~i~~----~---g~~~~Lv~VP~FskT---~~~vllnL 423 (435)
T KOG2732|consen 380 CPHVYIVGNQPKFGTRLIEG----G---GKNTLLVCVPKFSKT---GVAVLLNL 423 (435)
T ss_pred CCeEEEecCCCcccceeeec----C---CceEEEEEccccccc---ceEEEEEc
Confidence 99999999886555577653 1 246999999999996 45444443
No 9
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=99.83 E-value=2.1e-19 Score=183.16 Aligned_cols=227 Identities=16% Similarity=0.240 Sum_probs=158.1
Q ss_pred EEeCCCcCCCCCCchHHHHHHHHHHcc-----CCcEEEEeCcccCCCCccccCCCc-cccHHHHHHHHHHHHHHHHHHhc
Q 006976 359 IAAGPFTTTDNLYFEPLKELISYAKRK-----QPQLLILLGPFVDSEHPQIKKGTT-DSSFDEIFHLEILRRLQDYVEYM 432 (623)
Q Consensus 359 vAsGPft~~d~l~~epL~~ll~~~~~~-----~PdvlIL~GPFvD~~h~~i~~g~~-~~t~~~lF~~~il~~l~~~~~~~ 432 (623)
+.||..-......-..++.|+++++.. +||.||++|.++|...+.. ++. ..+.+++++. ++.+.++++.+
T Consensus 3 ~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~--~~~~~~~~~~~~~~--~~~~~~~l~~L 78 (243)
T cd07386 3 FISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYP--GQEEELEILDIYEQ--YEEAAEYLSDV 78 (243)
T ss_pred EecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCC--cchhhhhhhhHHHH--HHHHHHHHHhc
Confidence 345554322222224567777777765 5699999999999843211 110 0112233332 23344555555
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCCCCCCCC-CC-CCceEEecCCcEEEECCEEEEeechHHHHhhhhhhcccCCCCCCc
Q 006976 433 GSEVRAILVPSIRDANHDFVLPQPPFDIQPP-DI-IHQITSLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTS 510 (623)
Q Consensus 433 ~~~~~VvlVPS~rD~~~~~v~PQpp~~~~~~-~l-~~~v~~~~NP~~~~in~v~igvts~Dvl~~L~~~ei~~~~~~~~~ 510 (623)
...++|++||+.+|... ..+||+++..... .+ ..++++++||+.|++||..|.+++.|-+.++.+... + ..
T Consensus 79 ~~~~~v~~ipGNHD~~~-~~~pq~~l~~~l~~~~~~~~v~~l~Np~~~~~~g~~i~~~~G~~~~d~~~~~~-~-----~~ 151 (243)
T cd07386 79 PSHIKIIIIPGNHDAVR-QAEPQPALPEEIRKLFLPGNVEFVSNPALVKIHGVDVLIYHGRSIDDVVKLIP-G-----LS 151 (243)
T ss_pred ccCCeEEEeCCCCCccc-ccCCCCCccHHHHhhcCCCceEEeCCCCEEEECCEEEEEECCCCHHHHHHhCC-C-----CC
Confidence 56799999999999974 7899999987654 22 468999999999999999998887554444432211 1 13
Q ss_pred chhHHHHHHhhhccccccccccCCCCCCccccchhcccccccCCCCCcEEEcCCCCcceEEEecCCCCCCccccceEEEE
Q 006976 511 NDRMEIYSLDISLMGPAFFFYPLYPPAEGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCV 590 (623)
Q Consensus 511 ~dr~~rl~~hi~~l~~QrsfyPl~P~~~~~~lD~~~~~~~l~l~~~PDILIlPS~l~~F~k~v~~~~~~~~~~~~~~v~I 590 (623)
.++..++++++ + .|||++|++|....+..+. .+.+.++..||++|+++.-.++.+.++ +|++|
T Consensus 152 ~~~~~~~~~~~--l-~~~hl~P~~~~~~~~~~~~---~~~~~~~~~p~vii~Gh~h~~~~~~~~-----------~~~~v 214 (243)
T cd07386 152 YDKPGKAMEEL--L-KRRHLAPIYGGRTPIAPEP---EDYLVIDEVPDILHTGHVHVYGVGVYR-----------GVLLV 214 (243)
T ss_pred cccHHHHHHHH--H-hhcccCCCCCCCEeeCCCC---CCCEEecCCCCEEEECCCCchHhEEEC-----------CEEEE
Confidence 46789999999 9 9999999999755443332 456888999999999999988888874 59999
Q ss_pred cCCccccCCCCceE-EEEEEcCCcccc
Q 006976 591 NPGRLAKGEGSGTF-AEIYYHGSPEMM 616 (623)
Q Consensus 591 NPG~l~k~~~~Gty-a~l~v~~~~~~~ 616 (623)
|||.|.++ +.| -|+-|++.+-++
T Consensus 215 n~Gsf~~~---~~~~~~~~~~~~~~~~ 238 (243)
T cd07386 215 NSGTWQSQ---TEFQKKMNINPTPGKV 238 (243)
T ss_pred ECCCCcCC---CCcceeeccCCCccee
Confidence 99999985 566 677787766553
No 10
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=99.78 E-value=1.9e-17 Score=169.92 Aligned_cols=236 Identities=17% Similarity=0.187 Sum_probs=172.6
Q ss_pred EEEEeCCCcCCCCCCchHHHHHHHHHHc-----------cCCcEEEEeCcccCCCCccccCC-----CccccHHHHHHHH
Q 006976 357 MIIAAGPFTTTDNLYFEPLKELISYAKR-----------KQPQLLILLGPFVDSEHPQIKKG-----TTDSSFDEIFHLE 420 (623)
Q Consensus 357 I~vAsGPft~~d~l~~epL~~ll~~~~~-----------~~PdvlIL~GPFvD~~h~~i~~g-----~~~~t~~~lF~~~ 420 (623)
|++.||-.-.++......|+-|++|+.. .+...||++|..|+........- .......+++.
T Consensus 2 i~~vSgL~ig~~~~~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (257)
T cd07387 2 IALVSGLGLGGNAESSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVE-- 79 (257)
T ss_pred EEEEcccccCCCccchHHHHHHHHHhcCCCCCccccccccceEEEEEECCcccccccccchhhhhhccccccchhhHH--
Confidence 7888998877777777788888888864 24458999999999754211000 00111223333
Q ss_pred HHHHHHHHHHhcCCceEEEEecCCCCCCCCCCCCCCCCCCCCC---CCCCceEEecCCcEEEECCEEEEeechHHHHhhh
Q 006976 421 ILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLPQPPFDIQPP---DIIHQITSLTNPGTFEANQIKVGCCTVDVLKQLS 497 (623)
Q Consensus 421 il~~l~~~~~~~~~~~~VvlVPS~rD~~~~~v~PQpp~~~~~~---~l~~~v~~~~NP~~~~in~v~igvts~Dvl~~L~ 497 (623)
-++.+.+++..+.+.+.|+++|+.+|+.. .++|||||++..+ ...+++++++||+.|++||+.|.++|...+.+|.
T Consensus 80 ~~~~ld~~l~~l~~~i~V~imPG~~Dp~~-~~lPQqplh~~lfp~s~~~~~~~~vtNP~~~~i~g~~vLgtsGqni~Di~ 158 (257)
T cd07387 80 AVKELDNFLSQLASSVPVDLMPGEFDPAN-HSLPQQPLHRCLFPKSSNYSTLNLVTNPYEFSIDGVRVLGTSGQNVDDIL 158 (257)
T ss_pred HHHHHHHHHHhhhcCCeEEECCCCCCccc-ccCCCCCCCHHHhhcccccCCcEEeCCCeEEEECCEEEEEECCCCHHHHH
Confidence 36677888888888999999999999995 8999999999875 1235899999999999999999999999999988
Q ss_pred hhhcccCCCCCCcchhHHHHHHhhhccccccccccCCCCCCc-cccchhcccccccCCCCCcEEEcCCCCcceEEEecCC
Q 006976 498 GEEMSRCSKDGTSNDRMEIYSLDISLMGPAFFFYPLYPPAEG-IPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLG 576 (623)
Q Consensus 498 ~~ei~~~~~~~~~~dr~~rl~~hi~~l~~QrsfyPl~P~~~~-~~lD~~~~~~~l~l~~~PDILIlPS~l~~F~k~v~~~ 576 (623)
+. . + ..+++ .+++.+ | .+||+.|.+|.... .|+. -.+.+.|+..|||++++..-+.=.|.+.+
T Consensus 159 ky--~--~----~~~~l-~~me~~--L-~wrHlaPTaPDTL~~yP~~---~~Dpfvi~~~PhVyf~Gnq~~f~t~~~~~- 222 (257)
T cd07387 159 KY--S--S----LESRL-DILERT--L-KWRHIAPTAPDTLWCYPFT---DRDPFILEECPHVYFAGNQPKFGTKLVEG- 222 (257)
T ss_pred Hh--C--C----CCCHH-HHHHHH--H-HhcccCCCCCCccccccCC---CCCceeecCCCCEEEeCCCcceeeeEEEc-
Confidence 53 1 1 12333 556666 7 99999999998543 2321 13678889999999999987776777743
Q ss_pred CCCCccccceEEEEcCCccccCCCCceEEEEEEcCCcccccceeeeC
Q 006976 577 GRNEGEEQKKCVCVNPGRLAKGEGSGTFAEIYYHGSPEMMNASIISI 623 (623)
Q Consensus 577 ~~~~~~~~~~~v~INPG~l~k~~~~Gtya~l~v~~~~~~~~a~~~~i 623 (623)
.+.+.|.+|+-..|+|. |+.+-+.++- -++++|++
T Consensus 223 -----~~~~~v~lv~vP~Fs~t---~~~vlvdl~t----Le~~~v~f 257 (257)
T cd07387 223 -----EEGQRVLLVCVPSFSKT---GTAVLVNLRT----LECEPISF 257 (257)
T ss_pred -----CCCCeEEEEEeCCcCcC---CEEEEEECCc----CcEEEEeC
Confidence 22357999999999984 7887776653 45555553
No 11
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=99.77 E-value=7.9e-17 Score=174.23 Aligned_cols=330 Identities=16% Similarity=0.258 Sum_probs=223.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCC--CcccCccEEEEEEEEECC---CCCCCCceEEEeeccCCCCCeEEEeecC
Q 006976 213 DRFNALENRIRKHANALVSSGLYEEPTDP--TVASQRTLFAVGMICCDG---DGHLNDKSVLLQSSVEHSGGQRVRLDLH 287 (623)
Q Consensus 213 ~r~~~L~~rI~~~~~~~~~~~~~~~~~~~--~~~s~~~v~vvGrI~~d~---egkLn~~sv~LE~s~~~~~G~rV~Ldls 287 (623)
+=.....+|+++....+.+........+. .....+++.++|++..-. +|++ -+-|| +..| .|.+-+.
T Consensus 103 df~~~f~~R~~kL~~ii~~~~~~~~~~~~~~~~~~g~dv~Iig~v~~~r~t~~gh~---ii~~e----d~tG-~v~vvl~ 174 (481)
T COG1311 103 DFVPYFRDRYEKLSRIIREREEARYVSPIKKDLEGGSDVKIIGEVNDVRETKNGHF---IISLE----DTTG-VVTVVLG 174 (481)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCcchhhcccccCCCcEEEEEEccceeeecccE---EEEcc----cccc-eEEEEec
Confidence 33344455555555555544221111111 334455599999987432 3322 23334 2334 3333222
Q ss_pred ---CCCccc--ccCCCEEEEEeecCCCCeEEEeEeccCCCCCCCccccCCCchhhhhhhhccccccccCCCCeEEEEEeC
Q 006976 288 ---KLGEFS--LFPGQVVGIEGSNPSGHCLIASKLVDQIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEEISMIIAAG 362 (623)
Q Consensus 288 ---~l~~~s--lFPGQIV~v~G~n~~G~~f~V~ei~~~~Pl~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~I~vAsG 362 (623)
++..+. +.++.++++.|.-..-+. .+.+++. |.-+.. ..+. ...+++.+++-|.
T Consensus 175 k~~e~~~~~~dvl~d~vig~~g~~t~~~~-~a~~~~~--p~Vpg~--~~~~----------------~~~e~v~v~~isD 233 (481)
T COG1311 175 KDREAGRFVVDVLFDEVIGVSGPVTPRSS-FADRIYL--PDVPGL--SLNN----------------TGDERVYVALISD 233 (481)
T ss_pred cchhhhhhHHhhcCCccccccCccCCccc-cCCccee--ccCccc--cCCC----------------CCCcceEEEEEee
Confidence 233333 667789999998764333 6777773 321101 0111 2246778888888
Q ss_pred CCcCCCCCCchHHHHHHHHHHcc-----CCcEEEEeCcccCCCCccccCCC-ccccHHHHHHHHHHHHHHHHHHhcCCce
Q 006976 363 PFTTTDNLYFEPLKELISYAKRK-----QPQLLILLGPFVDSEHPQIKKGT-TDSSFDEIFHLEILRRLQDYVEYMGSEV 436 (623)
Q Consensus 363 Pft~~d~l~~epL~~ll~~~~~~-----~PdvlIL~GPFvD~~h~~i~~g~-~~~t~~~lF~~~il~~l~~~~~~~~~~~ 436 (623)
-.-.|..+--..+..+++|++.. +..+||+.|..||.-. |.-|+ .+...-+++++ .+.+++++..++.++
T Consensus 234 ih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGig--iYpgq~~eL~i~di~~q--y~~~A~~L~~vp~~I 309 (481)
T COG1311 234 IHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIG--IYPGQEEELVIADIYEQ--YEELAEFLDQVPEHI 309 (481)
T ss_pred eecccHHHHHHHHHHHHHHhcCCcccccceEEEEEecccccccc--cccCcccccccccchHH--HHHHHHHHhhCCCCc
Confidence 77767767777888999998763 5689999999999643 23333 23445556653 667788888899999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCCCCCC--CCceEEecCCcEEEECCEEEEeechHHHHhhhhhhcccCCCCCCcchhH
Q 006976 437 RAILVPSIRDANHDFVLPQPPFDIQPPDI--IHQITSLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRM 514 (623)
Q Consensus 437 ~VvlVPS~rD~~~~~v~PQpp~~~~~~~l--~~~v~~~~NP~~~~in~v~igvts~Dvl~~L~~~ei~~~~~~~~~~dr~ 514 (623)
+|+++|+++|+.. .+.|||.++.....+ .+|+.+++||++++++|+.+-+.+.=-+-+|.+. . | +.+.+..
T Consensus 310 ~v~i~PGnhDa~r-~a~PQp~~~~~~kslf~~~n~~~v~NP~~~~l~G~~vL~~hG~sidDii~~--v--P--~~~~~~~ 382 (481)
T COG1311 310 KVFIMPGNHDAVR-QALPQPHFPELIKSLFSLNNLLFVSNPALVSLHGVDVLIYHGRSIDDIIKL--V--P--GADYDSP 382 (481)
T ss_pred eEEEecCCCCccc-cccCCCCcchhhcccccccceEecCCCcEEEECCEEEEEecCCCHHHHHhh--C--C--CCCccch
Confidence 9999999999995 899999776543322 3579999999999999999977766555555421 1 1 2356778
Q ss_pred HHHHHhhhccccccccccCCCCCCccccchhcccccccCCCCCcEEEcCCCCcceEEEecCCCCCCccccceEEEEcCCc
Q 006976 515 EIYSLDISLMGPAFFFYPLYPPAEGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGR 594 (623)
Q Consensus 515 ~rl~~hi~~l~~QrsfyPl~P~~~~~~lD~~~~~~~l~l~~~PDILIlPS~l~~F~k~v~~~~~~~~~~~~~~v~INPG~ 594 (623)
..+++.+ | ..||+.|.||... ++-+.. ++++.++..|||+++++.-..-++++. ||..||.|+
T Consensus 383 ~~ame~l--L-k~rHlaPtygg~~--p~aP~~-kD~lVIeevPDv~~~Ghvh~~g~~~y~-----------gv~~vns~T 445 (481)
T COG1311 383 LKAMEEL--L-KRRHLAPTYGGTL--PIAPET-KDYLVIEEVPDVFHTGHVHKFGTGVYE-----------GVNLVNSGT 445 (481)
T ss_pred HHHHHHH--H-HhcccCCCCCCcc--ccccCC-cCceeeccCCcEEEEccccccceeEEe-----------ccceEEeee
Confidence 8899999 9 9999999999854 555554 789999999999999999888888874 599999999
Q ss_pred cccCC
Q 006976 595 LAKGE 599 (623)
Q Consensus 595 l~k~~ 599 (623)
|...+
T Consensus 446 ~q~qT 450 (481)
T COG1311 446 WQEQT 450 (481)
T ss_pred ecchh
Confidence 98764
No 12
>PRK09453 phosphodiesterase; Provisional
Probab=97.27 E-value=0.013 Score=57.16 Aligned_cols=159 Identities=10% Similarity=0.094 Sum_probs=94.9
Q ss_pred eEEEEEeCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccc--cHHHHHHHHHHHHHHHHHHhc
Q 006976 355 ISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDS--SFDEIFHLEILRRLQDYVEYM 432 (623)
Q Consensus 355 l~I~vAsGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~--t~~~lF~~~il~~l~~~~~~~ 432 (623)
++|+|.|.-. .++..|+.+++.+.+..||.+|++|.++|... .. .... ..++ +++.|.+
T Consensus 1 mri~viSD~H-----g~~~~~~~~l~~~~~~~~d~ii~lGDi~~~~~-~~---~~~~~~~~~~-----~~~~l~~----- 61 (182)
T PRK09453 1 MKLMFASDTH-----GSLPATEKALELFAQSGADWLVHLGDVLYHGP-RN---PLPEGYAPKK-----VAELLNA----- 61 (182)
T ss_pred CeEEEEEecc-----CCHHHHHHHHHHHHhcCCCEEEEcccccccCc-CC---CCccccCHHH-----HHHHHHh-----
Confidence 3678888754 24678999999998899999999999998421 10 0111 1222 3333332
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCceEEecCCcEEEECCEEEEeechHHHHhhhhhhcccCCCCCCcch
Q 006976 433 GSEVRAILVPSIRDANHDFVLPQPPFDIQPPDIIHQITSLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSND 512 (623)
Q Consensus 433 ~~~~~VvlVPS~rD~~~~~v~PQpp~~~~~~~l~~~v~~~~NP~~~~in~v~igvts~Dvl~~L~~~ei~~~~~~~~~~d 512 (623)
.+..+++|++++|..-...+. .++ .++....+.++|..|+++-.+.
T Consensus 62 -~~~~v~~V~GNhD~~~~~~~~---------~~~----~~~~~~~~~l~g~~i~l~HG~~-------------------- 107 (182)
T PRK09453 62 -YADKIIAVRGNCDSEVDQMLL---------HFP----IMAPYQQVLLEGKRLFLTHGHL-------------------- 107 (182)
T ss_pred -cCCceEEEccCCcchhhhhcc---------CCc----ccCceEEEEECCeEEEEECCCC--------------------
Confidence 235799999999963211100 011 1122233555555555443321
Q ss_pred hHHHHHHhhhccccccccccCCCCCCccccchhcccccccCCCCCcEEEcCCCCcceEEEecCCCCCCccccceEEEEcC
Q 006976 513 RMEIYSLDISLMGPAFFFYPLYPPAEGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNP 592 (623)
Q Consensus 513 r~~rl~~hi~~l~~QrsfyPl~P~~~~~~lD~~~~~~~l~l~~~PDILIlPS~l~~F~k~v~~~~~~~~~~~~~~v~INP 592 (623)
++ |. .. . -....|++|+++.-.++++.++ ++++|||
T Consensus 108 ------------------~~--~~--~~------~-----~~~~~d~vi~GHtH~p~~~~~~-----------~~~~iNp 143 (182)
T PRK09453 108 ------------------YG--PE--NL------P-----ALHDGDVLVYGHTHIPVAEKQG-----------GIILFNP 143 (182)
T ss_pred ------------------CC--hh--hc------c-----cccCCCEEEECCCCCCcceEEC-----------CEEEEEC
Confidence 10 10 00 0 0123699999999888888874 4999999
Q ss_pred CccccCC--CCceEEEEEEc
Q 006976 593 GRLAKGE--GSGTFAEIYYH 610 (623)
Q Consensus 593 G~l~k~~--~~Gtya~l~v~ 610 (623)
|++...+ ...||+.+.+.
T Consensus 144 Gs~~~p~~~~~~s~~il~~~ 163 (182)
T PRK09453 144 GSVSLPKGGYPASYGILDDN 163 (182)
T ss_pred CCccccCCCCCCeEEEEECC
Confidence 9998543 34699998873
No 13
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=97.16 E-value=0.011 Score=55.54 Aligned_cols=145 Identities=15% Similarity=0.172 Sum_probs=92.7
Q ss_pred EEEEeCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCce
Q 006976 357 MIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEV 436 (623)
Q Consensus 357 I~vAsGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~ 436 (623)
|.+.|.... .++.+..+++.+++ +|.+|++|.+++..-. .. +. ...
T Consensus 2 i~~isD~H~-----~~~~~~~~~~~~~~--~d~ii~~GD~~~~~~~-------~~-------------~~-------~~~ 47 (155)
T cd00841 2 IGVISDTHG-----SLELLEKALELFGD--VDLIIHAGDVLYPGPL-------NE-------------LE-------LKA 47 (155)
T ss_pred EEEEecCCC-----CHHHHHHHHHHhcC--CCEEEECCcccccccc-------ch-------------hh-------cCC
Confidence 556665432 24677888877765 9999999999875321 00 01 234
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCCCCCCCCceEEecCCcEEEECCEEEEeechHHHHhhhhhhcccCCCCCCcchhHHH
Q 006976 437 RAILVPSIRDANHDFVLPQPPFDIQPPDIIHQITSLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRMEI 516 (623)
Q Consensus 437 ~VvlVPS~rD~~~~~v~PQpp~~~~~~~l~~~v~~~~NP~~~~in~v~igvts~Dvl~~L~~~ei~~~~~~~~~~dr~~r 516 (623)
.+++|+++.|-... ...+|....+.++|..|+++-...... .+
T Consensus 48 ~~~~V~GNhD~~~~------------------~~~~p~~~~~~~~g~~i~v~Hg~~~~~---------------~~---- 90 (155)
T cd00841 48 PVIAVRGNCDGEVD------------------FPILPEEAVLEIGGKRIFLTHGHLYGV---------------KN---- 90 (155)
T ss_pred cEEEEeCCCCCcCC------------------cccCCceEEEEECCEEEEEECCccccc---------------cc----
Confidence 68999999997531 112334456788888888776442100 00
Q ss_pred HHHhhhccccccccccCCCCCCccccchhcccccccCCCCCcEEEcCCCCcceEEEecCCCCCCccccceEEEEcCCccc
Q 006976 517 YSLDISLMGPAFFFYPLYPPAEGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLA 596 (623)
Q Consensus 517 l~~hi~~l~~QrsfyPl~P~~~~~~lD~~~~~~~l~l~~~PDILIlPS~l~~F~k~v~~~~~~~~~~~~~~v~INPG~l~ 596 (623)
- . .+ ... .-....|+++..+.-.++.+.++ ++++||||.+.
T Consensus 91 ----~--~-~~----------------~~~-----~~~~~~d~vi~GHtH~~~~~~~~-----------~~~~inpGs~~ 131 (155)
T cd00841 91 ----G--L-DR----------------LYL-----AKEGGADVVLYGHTHIPVIEKIG-----------GVLLLNPGSLS 131 (155)
T ss_pred ----c--h-hh----------------hhh-----hhhcCCCEEEECcccCCccEEEC-----------CEEEEeCCCcc
Confidence 0 0 10 000 01124699999999888888775 49999999998
Q ss_pred cCC--CCceEEEEEEcC
Q 006976 597 KGE--GSGTFAEIYYHG 611 (623)
Q Consensus 597 k~~--~~Gtya~l~v~~ 611 (623)
... +.+||+.+.+.+
T Consensus 132 ~~~~~~~~~~~i~~~~~ 148 (155)
T cd00841 132 LPRGGGPPTYAILEIDD 148 (155)
T ss_pred CcCCCCCCeEEEEEecC
Confidence 653 567999999986
No 14
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=97.02 E-value=0.022 Score=55.83 Aligned_cols=53 Identities=19% Similarity=0.157 Sum_probs=39.7
Q ss_pred CCcEEEcCCCCcceEEEecCCCCCCccccceEEEEcCCccccC------CCCceEEEEEEcCCcccccceee
Q 006976 556 IPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKG------EGSGTFAEIYYHGSPEMMNASII 621 (623)
Q Consensus 556 ~PDILIlPS~l~~F~k~v~~~~~~~~~~~~~~v~INPG~l~k~------~~~Gtya~l~v~~~~~~~~a~~~ 621 (623)
.+||++.++.-.++.+.++ ++++||||+++.. ....|||.+++... ++..+++
T Consensus 106 ~~dvii~GHTH~p~~~~~~-----------g~~viNPGSv~~~~~~~~~~~~~syail~~~~~--~~~~~~~ 164 (178)
T cd07394 106 DVDILISGHTHKFEAFEHE-----------GKFFINPGSATGAFSPLDPNVIPSFVLMDIQGS--KVVTYVY 164 (178)
T ss_pred CCCEEEECCCCcceEEEEC-----------CEEEEECCCCCCCCCCCCCCCCCeEEEEEecCC--eEEEEEE
Confidence 3599999999889988875 4999999999732 22459999998654 2444444
No 15
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=96.83 E-value=0.035 Score=56.54 Aligned_cols=72 Identities=18% Similarity=0.379 Sum_probs=50.1
Q ss_pred CCeEEEEEeCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhc
Q 006976 353 EEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYM 432 (623)
Q Consensus 353 ~~l~I~vAsGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~ 432 (623)
...+|++.|.... +++.|+.+++.+++..||++|++|.+++.. .-.+.+.+ +++.|.+
T Consensus 3 ~~~kIl~iSDiHg-----n~~~le~l~~~~~~~~~D~vv~~GDl~~~g-------~~~~~~~~-----~l~~l~~----- 60 (224)
T cd07388 3 TVRYVLATSNPKG-----DLEALEKLVGLAPETGADAIVLIGNLLPKA-------AKSEDYAA-----FFRILGE----- 60 (224)
T ss_pred ceeEEEEEEecCC-----CHHHHHHHHHHHhhcCCCEEEECCCCCCCC-------CCHHHHHH-----HHHHHHh-----
Confidence 3457888887642 578899999988888999999999998753 00112222 2333332
Q ss_pred CCceEEEEecCCCCC
Q 006976 433 GSEVRAILVPSIRDA 447 (623)
Q Consensus 433 ~~~~~VvlVPS~rD~ 447 (623)
-...++.||++.|.
T Consensus 61 -l~~pv~~V~GNhD~ 74 (224)
T cd07388 61 -AHLPTFYVPGPQDA 74 (224)
T ss_pred -cCCceEEEcCCCCh
Confidence 24579999999996
No 16
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=96.79 E-value=0.047 Score=53.40 Aligned_cols=152 Identities=14% Similarity=0.154 Sum_probs=97.7
Q ss_pred eEEEEEeCCCcCCCCCCchH-HHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcC
Q 006976 355 ISMIIAAGPFTTTDNLYFEP-LKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMG 433 (623)
Q Consensus 355 l~I~vAsGPft~~d~l~~ep-L~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~ 433 (623)
++|+|.|. .-...+ ........+..++|++|.+|.++... ++.. +...
T Consensus 2 m~ilviSD------tH~~~~~~~~~~~~~~~~~~d~vih~GD~~~~~-----------~~~~---------l~~~----- 50 (172)
T COG0622 2 MKILVISD------THGPLRAIEKALKIFNLEKVDAVIHAGDSTSPF-----------TLDA---------LEGG----- 50 (172)
T ss_pred cEEEEEec------cCCChhhhhHHHHHhhhcCCCEEEECCCcCCcc-----------chHH---------hhcc-----
Confidence 46777764 333332 23344455668999999999886532 1211 1110
Q ss_pred CceEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCceEEecCCcEEEECCEEEEeechHHHHhhhhhhcccCCCCCCcchh
Q 006976 434 SEVRAILVPSIRDANHDFVLPQPPFDIQPPDIIHQITSLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDR 513 (623)
Q Consensus 434 ~~~~VvlVPS~rD~~~~~v~PQpp~~~~~~~l~~~v~~~~NP~~~~in~v~igvts~Dvl~~L~~~ei~~~~~~~~~~dr 513 (623)
-..+++.|=+.-|-.... ..+++..+|.++|++|+++...... .+ .....
T Consensus 51 ~~~~i~~V~GN~D~~~~~------------------~~~p~~~~~~~~g~ki~l~HGh~~~-~~-----------~~~~~ 100 (172)
T COG0622 51 LAAKLIAVRGNCDGEVDQ------------------EELPEELVLEVGGVKIFLTHGHLYF-VK-----------TDLSL 100 (172)
T ss_pred cccceEEEEccCCCcccc------------------ccCChhHeEEECCEEEEEECCCccc-cc-----------cCHHH
Confidence 145788898988876422 3556677899999999998765332 11 01122
Q ss_pred HHHHHHhhhccccccccccCCCCCCccccchhcccccccCCCCCcEEEcCCCCcceEEEecCCCCCCccccceEEEEcCC
Q 006976 514 MEIYSLDISLMGPAFFFYPLYPPAEGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPG 593 (623)
Q Consensus 514 ~~rl~~hi~~l~~QrsfyPl~P~~~~~~lD~~~~~~~l~l~~~PDILIlPS~l~~F~k~v~~~~~~~~~~~~~~v~INPG 593 (623)
+..+++ ....||+|.++.-++.+..++ ++++||||
T Consensus 101 l~~la~----------------------------------~~~~Dvli~GHTH~p~~~~~~-----------~i~~vNPG 135 (172)
T COG0622 101 LEYLAK----------------------------------ELGADVLIFGHTHKPVAEKVG-----------GILLVNPG 135 (172)
T ss_pred HHHHHH----------------------------------hcCCCEEEECCCCcccEEEEC-----------CEEEEcCC
Confidence 222222 223899999999989888875 49999999
Q ss_pred ccccCCCC--ceEEEEEEcCC
Q 006976 594 RLAKGEGS--GTFAEIYYHGS 612 (623)
Q Consensus 594 ~l~k~~~~--Gtya~l~v~~~ 612 (623)
+++-.+++ -|||.+.+...
T Consensus 136 S~s~pr~~~~~sy~il~~~~~ 156 (172)
T COG0622 136 SVSGPRGGNPASYAILDVDNL 156 (172)
T ss_pred CcCCCCCCCCcEEEEEEcCCC
Confidence 99976642 27999987654
No 17
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=96.74 E-value=0.018 Score=58.15 Aligned_cols=198 Identities=16% Similarity=0.180 Sum_probs=105.5
Q ss_pred CeEEEEEeCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcC
Q 006976 354 EISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMG 433 (623)
Q Consensus 354 ~l~I~vAsGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~ 433 (623)
.++|+..+...- .++.+..+++.+.+.++|+||+.|++.+.. -|+-...-+++ .++.+. .
T Consensus 3 ~mkil~vtDlHg-----~~~~~~k~~~~~~~~~~D~lviaGDlt~~~-----~~~~~~~~~~~-------~~e~l~---~ 62 (226)
T COG2129 3 KMKILAVTDLHG-----SEDSLKKLLNAAADIRADLLVIAGDLTYFH-----FGPKEVAEELN-------KLEALK---E 62 (226)
T ss_pred cceEEEEecccc-----chHHHHHHHHHHhhccCCEEEEecceehhh-----cCchHHHHhhh-------HHHHHH---h
Confidence 456776665432 466789999999999999999999998211 11111122211 022222 2
Q ss_pred CceEEEEecCCCCCCCC-CCCCCCCCCCCCCCCCCceEEecCCcEEEECCEEEEe------echHHHHhhhhhhcccCCC
Q 006976 434 SEVRAILVPSIRDANHD-FVLPQPPFDIQPPDIIHQITSLTNPGTFEANQIKVGC------CTVDVLKQLSGEEMSRCSK 506 (623)
Q Consensus 434 ~~~~VvlVPS~rD~~~~-~v~PQpp~~~~~~~l~~~v~~~~NP~~~~in~v~igv------ts~Dvl~~L~~~ei~~~~~ 506 (623)
..++|+.||+.-|+... .++ + ....+++. -.+.++++.|+- |--...+++..+|+..
T Consensus 63 ~~~~v~avpGNcD~~~v~~~l-------~--~~~~~v~~----~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s--- 126 (226)
T COG2129 63 LGIPVLAVPGNCDPPEVIDVL-------K--NAGVNVHG----RVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIYS--- 126 (226)
T ss_pred cCCeEEEEcCCCChHHHHHHH-------H--hccccccc----ceEEecCcEEEEecccCCCCCCCccccCHHHHHH---
Confidence 58899999999887521 010 0 11122332 677777777633 2233334444444431
Q ss_pred CCCcchhHHHHHHhhhcccccc----ccccCCCCCCccccchhcccc-c---ccCCCCCcEEEcCCCC--cceEEEecCC
Q 006976 507 DGTSNDRMEIYSLDISLMGPAF----FFYPLYPPAEGIPLDFSLAQE-A---LTISTIPDIIILPSDM--KYFIKVLSLG 576 (623)
Q Consensus 507 ~~~~~dr~~rl~~hi~~l~~Qr----sfyPl~P~~~~~~lD~~~~~~-~---l~l~~~PDILIlPS~l--~~F~k~v~~~ 576 (623)
.+.++.+.+ . .-+ ..+|=|+...+.+.++.+... . +.-+..|=+-|+++-- +-+-|+
T Consensus 127 ------~l~~~v~~~--~-~~~~Il~~HaPP~gt~~d~~~g~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d~i---- 193 (226)
T COG2129 127 ------KLKSLVKKA--D-NPVNILLTHAPPYGTLLDTPSGYVHVGSKAVRKLIEEFQPLLGLHGHIHESRGIDKI---- 193 (226)
T ss_pred ------HHHHHHhcc--c-CcceEEEecCCCCCccccCCCCccccchHHHHHHHHHhCCceEEEeeeccccccccc----
Confidence 222333222 1 111 334444433232222222110 0 1114567677776653 333332
Q ss_pred CCCCccccceEEEEcCCccccCCCCceEEEEEEcCC
Q 006976 577 GRNEGEEQKKCVCVNPGRLAKGEGSGTFAEIYYHGS 612 (623)
Q Consensus 577 ~~~~~~~~~~~v~INPG~l~k~~~~Gtya~l~v~~~ 612 (623)
.++++||||.+.. |.||.+.+.+.
T Consensus 194 --------G~TivVNPG~~~~----g~yA~i~l~~~ 217 (226)
T COG2129 194 --------GNTIVVNPGPLGE----GRYALIELEKE 217 (226)
T ss_pred --------CCeEEECCCCccC----ceEEEEEecCc
Confidence 4699999999655 79999999875
No 18
>PHA02546 47 endonuclease subunit; Provisional
Probab=96.71 E-value=0.016 Score=62.44 Aligned_cols=101 Identities=17% Similarity=0.245 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCCCCC-
Q 006976 373 EPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDF- 451 (623)
Q Consensus 373 epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~~~~- 451 (623)
+-|..+++++.+.+||+||++|.++|...+.- ..+. .+++..++++|.+ .+++|++||+++|.....
T Consensus 26 ~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~-----~~~~-~~~~~~l~~~L~~------~gi~v~~I~GNHD~~~~~~ 93 (340)
T PHA02546 26 KFIKQAIEYSKAHGITTWIQLGDTFDVRKAIT-----QNTM-NFVREKIFDLLKE------AGITLHVLVGNHDMYYKNT 93 (340)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcccCCCCCCC-----HHHH-HHHHHHHHHHHHH------CCCeEEEEccCCCcccccc
Confidence 56888888899999999999999999753210 1122 1222213333321 478999999999974321
Q ss_pred CCCCCCCCCCCCCCCCceEEecCCcEEEECCEEEEe
Q 006976 452 VLPQPPFDIQPPDIIHQITSLTNPGTFEANQIKVGC 487 (623)
Q Consensus 452 v~PQpp~~~~~~~l~~~v~~~~NP~~~~in~v~igv 487 (623)
..+..+. ..+....+++++..|.++.+.|+.|.+
T Consensus 94 ~~~~~~~--~ll~~~~~v~v~~~~~~v~i~g~~i~~ 127 (340)
T PHA02546 94 IRPNAPT--ELLGQYDNITVIDEPTTVDFDGCSIDL 127 (340)
T ss_pred cccCchH--HHHhhCCCEEEeCCceEEEECCEEEEE
Confidence 2222111 112234689999999999999987653
No 19
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=96.65 E-value=0.06 Score=51.14 Aligned_cols=149 Identities=18% Similarity=0.273 Sum_probs=89.8
Q ss_pred EEEEEeCCCcCCCCCCchHHHHHHHHHHcc-CCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCC
Q 006976 356 SMIIAAGPFTTTDNLYFEPLKELISYAKRK-QPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGS 434 (623)
Q Consensus 356 ~I~vAsGPft~~d~l~~epL~~ll~~~~~~-~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~ 434 (623)
+|++.|.-.. .+..++.+++.+... +||.+|.+|.+++ .+ +++.+.++
T Consensus 2 ~i~viSD~H~-----~~~~~~~~~~~~~~~~~~d~ii~~GD~~~---------------~~-----~~~~l~~~------ 50 (158)
T TIGR00040 2 KILVISDTHG-----PLRATELPVELFNLESNVDLVIHAGDLTS---------------PF-----VLKEFEDL------ 50 (158)
T ss_pred EEEEEecccC-----CcchhHhHHHHHhhccCCCEEEEcCCCCC---------------HH-----HHHHHHHh------
Confidence 5777776442 344566666666666 8999999999872 11 22223221
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCceEEecCCcEEEECCEEEEeechHHHHhhhhhhcccCCCCCCcchhH
Q 006976 435 EVRAILVPSIRDANHDFVLPQPPFDIQPPDIIHQITSLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRM 514 (623)
Q Consensus 435 ~~~VvlVPS~rD~~~~~v~PQpp~~~~~~~l~~~v~~~~NP~~~~in~v~igvts~Dvl~~L~~~ei~~~~~~~~~~dr~ 514 (623)
...++.|++..|... . .++ .-..+.+.|..|+++.....
T Consensus 51 ~~~~~~V~GN~D~~~-~------------~~~-------~~~~~~~~g~~i~l~Hg~~~--------------------- 89 (158)
T TIGR00040 51 AAKVIAVRGNNDGER-D------------ELP-------EEEIFEAEGIDFGLVHGDLV--------------------- 89 (158)
T ss_pred CCceEEEccCCCchh-h------------hCC-------cceEEEECCEEEEEEeCccc---------------------
Confidence 235899999999731 0 111 11346677777777654420
Q ss_pred HHHHHhhhccccccccccCCCCCCccccchhcccccccCCCCCcEEEcCCCCcceEEEecCCCCCCccccceEEEEcCCc
Q 006976 515 EIYSLDISLMGPAFFFYPLYPPAEGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGR 594 (623)
Q Consensus 515 ~rl~~hi~~l~~QrsfyPl~P~~~~~~lD~~~~~~~l~l~~~PDILIlPS~l~~F~k~v~~~~~~~~~~~~~~v~INPG~ 594 (623)
+ |......+ ..+......|++|.++.-.++.+.++ ++++||||.
T Consensus 90 ----------------~---~~~~~~~l------~~~~~~~~~d~vi~GHtH~~~~~~~~-----------~~~~iNpGs 133 (158)
T TIGR00040 90 ----------------Y---PRGDLLVL------EYLAKELGVDVLIFGHTHIPVAEELR-----------GILLINPGS 133 (158)
T ss_pred ----------------c---cCCCHHHH------HHHHhccCCCEEEECCCCCCccEEEC-----------CEEEEECCc
Confidence 0 10000000 00111234589999998888887774 499999999
Q ss_pred cccCCC--CceEEEEEEcCC
Q 006976 595 LAKGEG--SGTFAEIYYHGS 612 (623)
Q Consensus 595 l~k~~~--~Gtya~l~v~~~ 612 (623)
+...+. ..+|+.+.+...
T Consensus 134 ~~~~~~~~~~~~~il~~~~~ 153 (158)
T TIGR00040 134 LTGPRNGNTPSYAILDVDKD 153 (158)
T ss_pred cccccCCCCCeEEEEEecCC
Confidence 985443 359999998654
No 20
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=96.31 E-value=0.00069 Score=68.36 Aligned_cols=42 Identities=19% Similarity=0.337 Sum_probs=29.3
Q ss_pred CeEEEEEeCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeCcccCCC
Q 006976 354 EISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSE 400 (623)
Q Consensus 354 ~l~I~vAsGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~ 400 (623)
+-+|+..|++-- +++.|..|+..+.+.+||+||++|..+...
T Consensus 5 ~~kilA~s~~~g-----~~e~l~~l~~~~~e~~~D~~v~~G~~~~~~ 46 (255)
T PF14582_consen 5 VRKILAISNFRG-----DFELLERLVEVIPEKGPDAVVFVGDLLKAE 46 (255)
T ss_dssp --EEEEEE--TT------HHHHHHHHHHHHHHT-SEEEEES-SS-TC
T ss_pred chhheeecCcch-----HHHHHHHHHhhccccCCCEEEEeccccccc
Confidence 347888887732 688899999999999999999999987653
No 21
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=96.18 E-value=0.038 Score=51.34 Aligned_cols=153 Identities=16% Similarity=0.266 Sum_probs=86.5
Q ss_pred eEEEEEeCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCC
Q 006976 355 ISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGS 434 (623)
Q Consensus 355 l~I~vAsGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~ 434 (623)
++|++.|...- ..+.|.++++.+ .+||.+|++|.++|. . ++++.++++
T Consensus 1 Mki~~~sD~H~-----~~~~~~~~~~~~--~~~d~vi~~GDi~~~--------------~-----~~~~~~~~~------ 48 (156)
T PF12850_consen 1 MKIAVISDLHG-----NLDALEAVLEYI--NEPDFVIILGDIFDP--------------E-----EVLELLRDI------ 48 (156)
T ss_dssp EEEEEEE--TT-----THHHHHHHHHHH--TTESEEEEES-SCSH--------------H-----HHHHHHHHH------
T ss_pred CEEEEEeCCCC-----ChhHHHHHHHHh--cCCCEEEECCCchhH--------------H-----HHHHHHhcC------
Confidence 46888876543 445688888888 469999999998771 2 244444432
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCceEEecCCcEEEECCEEEEeechHHHHhhhhhhcccCCCCCCcchhH
Q 006976 435 EVRAILVPSIRDANHDFVLPQPPFDIQPPDIIHQITSLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRM 514 (623)
Q Consensus 435 ~~~VvlVPS~rD~~~~~v~PQpp~~~~~~~l~~~v~~~~NP~~~~in~v~igvts~Dvl~~L~~~ei~~~~~~~~~~dr~ 514 (623)
++++|++.+|-. .||...... ++.+-..+.+.+..|.++-.+
T Consensus 49 --~~~~v~GNHD~~---~~~~~~~~~----------~~~~~~~~~~~~~~i~~~H~~----------------------- 90 (156)
T PF12850_consen 49 --PVYVVRGNHDNW---AFPNENDEE----------YLLDALRLTIDGFKILLSHGH----------------------- 90 (156)
T ss_dssp --EEEEE--CCHST---HHHSEECTC----------SSHSEEEEEETTEEEEEESST-----------------------
T ss_pred --CEEEEeCCcccc---cchhhhhcc----------ccccceeeeecCCeEEEECCC-----------------------
Confidence 799999999932 133221110 133333333333333333221
Q ss_pred HHHHHhhhccccccccccCCCCCCccccchhcccccccCCCCCcEEEcCCCCcceEEEecCCCCCCccccceEEEEcCCc
Q 006976 515 EIYSLDISLMGPAFFFYPLYPPAEGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGR 594 (623)
Q Consensus 515 ~rl~~hi~~l~~QrsfyPl~P~~~~~~lD~~~~~~~l~l~~~PDILIlPS~l~~F~k~v~~~~~~~~~~~~~~v~INPG~ 594 (623)
|.. +..+.+.+.. ......+++++.++.=+++....+ ++.+||||.
T Consensus 91 -----------------~~~-----~~~~~~~~~~-~~~~~~~~~~~~GH~H~~~~~~~~-----------~~~~~~~Gs 136 (156)
T PF12850_consen 91 -----------------PYD-----VQWDPAELRE-ILSRENVDLVLHGHTHRPQVFKIG-----------GIHVINPGS 136 (156)
T ss_dssp -----------------SSS-----STTTHHHHHH-HHHHTTSSEEEESSSSSEEEEEET-----------TEEEEEE-G
T ss_pred -----------------Ccc-----cccChhhhhh-hhcccCCCEEEcCCcccceEEEEC-----------CEEEEECCc
Confidence 110 1111111111 112467999999999888887764 499999999
Q ss_pred cccCCC--CceEEEEEEcC
Q 006976 595 LAKGEG--SGTFAEIYYHG 611 (623)
Q Consensus 595 l~k~~~--~Gtya~l~v~~ 611 (623)
+..... .++|+.+++..
T Consensus 137 ~~~~~~~~~~~~~i~~~~~ 155 (156)
T PF12850_consen 137 IGGPRHGDQSGYAILDIED 155 (156)
T ss_dssp SSS-SSSSSEEEEEEEETT
T ss_pred CCCCCCCCCCEEEEEEEec
Confidence 987654 78999998753
No 22
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=95.99 E-value=0.034 Score=56.78 Aligned_cols=115 Identities=16% Similarity=0.156 Sum_probs=69.0
Q ss_pred EEEEEeCCCcCCCCCCchHHHHHHHHH--HccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcC
Q 006976 356 SMIIAAGPFTTTDNLYFEPLKELISYA--KRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMG 433 (623)
Q Consensus 356 ~I~vAsGPft~~d~l~~epL~~ll~~~--~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~ 433 (623)
++++.|.-.-.... -+....|++.+ ...+||.|+++|.++|.-...- .......+ +.+.|.++.+
T Consensus 2 ~i~~iSDlHl~~~~--~~~~~~~~~~l~~~~~~~d~l~i~GDl~d~~~g~~---~~~~~~~~-----~~~~l~~l~~--- 68 (241)
T PRK05340 2 PTLFISDLHLSPER--PAITAAFLRFLRGEARQADALYILGDLFEAWIGDD---DPSPFARE-----IAAALKALSD--- 68 (241)
T ss_pred cEEEEeecCCCCCC--hhHHHHHHHHHHhhhccCCEEEEccceeccccccC---cCCHHHHH-----HHHHHHHHHH---
Confidence 46666655432211 11223344433 3368999999999998522100 00111222 3334444432
Q ss_pred CceEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCceEEecCCcEEEECCEEEEeechHHH
Q 006976 434 SEVRAILVPSIRDANHDFVLPQPPFDIQPPDIIHQITSLTNPGTFEANQIKVGCCTVDVL 493 (623)
Q Consensus 434 ~~~~VvlVPS~rD~~~~~v~PQpp~~~~~~~l~~~v~~~~NP~~~~in~v~igvts~Dvl 493 (623)
.++.|++|++++|..... .|.. ...+++++||..+.++|..+.++-.|.+
T Consensus 69 ~g~~v~~v~GNHD~~~~~-----~~~~-----~~g~~~l~~~~~~~~~g~~i~l~HGd~~ 118 (241)
T PRK05340 69 SGVPCYFMHGNRDFLLGK-----RFAK-----AAGMTLLPDPSVIDLYGQRVLLLHGDTL 118 (241)
T ss_pred cCCeEEEEeCCCchhhhH-----HHHH-----hCCCEEeCCcEEEEECCEEEEEECCccc
Confidence 458999999999964211 1100 1358999999999999999999999966
No 23
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.45 E-value=0.066 Score=55.34 Aligned_cols=86 Identities=20% Similarity=0.354 Sum_probs=56.8
Q ss_pred chHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCc-eEEEEecCCCCCCCC
Q 006976 372 FEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSE-VRAILVPSIRDANHD 450 (623)
Q Consensus 372 ~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~-~~VvlVPS~rD~~~~ 450 (623)
+.-|..+++.+.+.+||+||+.|.++|...|.. . -..+|.. ++++|.+ .. +.|++|++++|....
T Consensus 25 ~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~~------~-~~~~~~~-~l~~l~~------~~~i~v~~i~GNHD~~~~ 90 (253)
T TIGR00619 25 KAFLDDLLEFAKAEQIDALLVAGDVFDTANPPA------E-AQELFNA-FFRNLSD------ANPIPIVVISGNHDSAQR 90 (253)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccCCCCCCCH------H-HHHHHHH-HHHHHHh------cCCceEEEEccCCCChhh
Confidence 456788888888999999999999999876531 1 1223332 3444432 23 889999999998643
Q ss_pred CCCCCCCCCCCCCCCCCceEEecCCcE
Q 006976 451 FVLPQPPFDIQPPDIIHQITSLTNPGT 477 (623)
Q Consensus 451 ~v~PQpp~~~~~~~l~~~v~~~~NP~~ 477 (623)
.-.++.-+ ...+|+++++|..
T Consensus 91 ~~~~~~l~------~~~~v~i~~~~~~ 111 (253)
T TIGR00619 91 LSAAKKLL------IELGVFVVGFPVG 111 (253)
T ss_pred cccchhHH------HhCCeEEEEeccc
Confidence 32333221 1357888888764
No 24
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=95.38 E-value=0.043 Score=55.69 Aligned_cols=97 Identities=14% Similarity=0.184 Sum_probs=61.1
Q ss_pred HHHHHHHHc--cCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCCCCCCC
Q 006976 376 KELISYAKR--KQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVL 453 (623)
Q Consensus 376 ~~ll~~~~~--~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~~~~v~ 453 (623)
..+++.+.+ .+||+||++|.++|.-... .......+. +...|.++.+ .++.|++|++.+|......
T Consensus 18 ~~~l~~l~~~~~~~d~lii~GDi~d~~~~~---~~~~~~~~~-----~~~~l~~L~~---~~~~v~~v~GNHD~~~~~~- 85 (231)
T TIGR01854 18 ALFLDFLREEARKADALYILGDLFEAWIGD---DDPSTLARS-----VAQAIRQVSD---QGVPCYFMHGNRDFLIGKR- 85 (231)
T ss_pred HHHHHHHHhhhccCCEEEEcCceeccccCC---CCCCHHHHH-----HHHHHHHHHH---CCCeEEEEcCCCchhhhHH-
Confidence 445555544 2899999999999952210 001111122 3333444332 3578999999999642110
Q ss_pred CCCCCCCCCCCCCCceEEecCCcEEEECCEEEEeechHHH
Q 006976 454 PQPPFDIQPPDIIHQITSLTNPGTFEANQIKVGCCTVDVL 493 (623)
Q Consensus 454 PQpp~~~~~~~l~~~v~~~~NP~~~~in~v~igvts~Dvl 493 (623)
|. -..++++++||..+.++|..+.++-.|.+
T Consensus 86 ----~~-----~~~gi~~l~~~~~~~~~g~~ill~HGd~~ 116 (231)
T TIGR01854 86 ----FA-----REAGMTLLPDPSVIDLYGQKVLLMHGDTL 116 (231)
T ss_pred ----HH-----HHCCCEEECCCEEEEECCEEEEEEcCccc
Confidence 10 02368999999999999999999888866
No 25
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=94.88 E-value=0.062 Score=59.45 Aligned_cols=82 Identities=15% Similarity=0.247 Sum_probs=52.5
Q ss_pred HHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCCCCCCCC
Q 006976 375 LKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLP 454 (623)
Q Consensus 375 L~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~~~~v~P 454 (623)
|..+++.+++.+||+||++|.++|...|.- .-..+|.+ ++.+|.+ .++.|++|++++|.....-++
T Consensus 28 l~~l~~~i~~~~~D~viIaGDifD~~~p~~-------~a~~~~~~-~l~~L~~------~~~~v~~I~GNHD~~~~l~~~ 93 (407)
T PRK10966 28 LDWLLEQVQEHQVDAIIVAGDIFDTGSPPS-------YARELYNR-FVVNLQQ------TGCQLVVLAGNHDSVATLNES 93 (407)
T ss_pred HHHHHHHHHhcCCCEEEECCccccCCCCcH-------HHHHHHHH-HHHHHHh------cCCcEEEEcCCCCChhhhhhH
Confidence 556777888899999999999999765421 11233432 4444432 357899999999975422122
Q ss_pred CCCCCCCCCCCCCceEEecCCc
Q 006976 455 QPPFDIQPPDIIHQITSLTNPG 476 (623)
Q Consensus 455 Qpp~~~~~~~l~~~v~~~~NP~ 476 (623)
..-| ...+|+++.|++
T Consensus 94 ~~~l------~~~gi~vl~~~~ 109 (407)
T PRK10966 94 RDLL------AFLNTTVIASAS 109 (407)
T ss_pred HHHH------HHCCcEEEeccc
Confidence 2111 134799998874
No 26
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=94.10 E-value=0.22 Score=51.89 Aligned_cols=118 Identities=14% Similarity=0.142 Sum_probs=69.5
Q ss_pred CCeEEEEEeCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhc
Q 006976 353 EEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYM 432 (623)
Q Consensus 353 ~~l~I~vAsGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~ 432 (623)
++++|++.|..... .....+.+.++++.+++.+||+||++|.++|..++. ..+++.+ +++.|.
T Consensus 48 ~~~rI~~lSDlH~~-~~~~~~~l~~~v~~i~~~~pDlVli~GD~~d~~~~~--------~~~~~~~--~L~~L~------ 110 (271)
T PRK11340 48 APFKILFLADLHYS-RFVPLSLISDAIALGIEQKPDLILLGGDYVLFDMPL--------NFSAFSD--VLSPLA------ 110 (271)
T ss_pred CCcEEEEEcccCCC-CcCCHHHHHHHHHHHHhcCCCEEEEccCcCCCCccc--------cHHHHHH--HHHHHh------
Confidence 46889999987653 122355688999999999999999999999854321 1222211 333333
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCceEEecCCc-EEEECCEEEEeechH
Q 006976 433 GSEVRAILVPSIRDANHDFVLPQPPFDIQPPDIIHQITSLTNPG-TFEANQIKVGCCTVD 491 (623)
Q Consensus 433 ~~~~~VvlVPS~rD~~~~~v~PQpp~~~~~~~l~~~v~~~~NP~-~~~in~v~igvts~D 491 (623)
....|+.|++++|-....... ..+. +.+. ...++++.|-. .+.+++..|-+...|
T Consensus 111 -~~~pv~~V~GNHD~~~~~~~~-~~~~-~~l~-~~gi~lL~n~~~~i~~~~~~i~i~G~~ 166 (271)
T PRK11340 111 -ECAPTFACFGNHDRPVGTEKN-HLIG-ETLK-SAGITVLFNQATVIATPNRQFELVGTG 166 (271)
T ss_pred -hcCCEEEecCCCCcccCccch-HHHH-HHHH-hcCcEEeeCCeEEEeeCCcEEEEEEec
Confidence 124599999999963210000 0000 0111 13578886654 556666555554443
No 27
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=92.17 E-value=0.58 Score=46.48 Aligned_cols=111 Identities=16% Similarity=0.196 Sum_probs=68.8
Q ss_pred eEEEEEeCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCC
Q 006976 355 ISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGS 434 (623)
Q Consensus 355 l~I~vAsGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~ 434 (623)
++|++.|...... ....+.+..+++.+++.+||++|++|.++|..... . +.+.+ ++ .+ +..
T Consensus 2 ~~i~~~sDlH~~~-~~~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~~------~---~~~~~--~l---~~----l~~ 62 (223)
T cd07385 2 LRIAHLSDLHLGP-FVSRERLERLVEKINALKPDLVVLTGDLVDGSVDV------L---ELLLE--LL---KK----LKA 62 (223)
T ss_pred CEEEEEeecCCCc-cCCHHHHHHHHHHHhccCCCEEEEcCcccCCcchh------h---HHHHH--HH---hc----cCC
Confidence 5788888776532 22235788999999999999999999999875431 0 11111 22 21 224
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCceEEecCCcE-EEECCEEEEeec
Q 006976 435 EVRAILVPSIRDANHDFVLPQPPFDIQPPDIIHQITSLTNPGT-FEANQIKVGCCT 489 (623)
Q Consensus 435 ~~~VvlVPS~rD~~~~~v~PQpp~~~~~~~l~~~v~~~~NP~~-~~in~v~igvts 489 (623)
...++++|+.+|.....-.. + .+... ..+++++.|... +..++..+++..
T Consensus 63 ~~~v~~v~GNHD~~~~~~~~---~-~~~l~-~~~v~~L~~~~~~~~~~~~~i~i~G 113 (223)
T cd07385 63 PLGVYAVLGNHDYYSGDEEN---W-IEALE-SAGITVLRNESVEISVGGATIGIAG 113 (223)
T ss_pred CCCEEEECCCcccccCchHH---H-HHHHH-HcCCEEeecCcEEeccCCeEEEEEe
Confidence 57799999999986421100 0 11111 235777777653 556777777765
No 28
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=91.75 E-value=0.88 Score=44.88 Aligned_cols=64 Identities=17% Similarity=0.454 Sum_probs=44.2
Q ss_pred chHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCCC
Q 006976 372 FEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANH 449 (623)
Q Consensus 372 ~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~~ 449 (623)
++.|..+++.+++.+||.+|+.|.++|...+. ...+.. +.+.+.++.+ ..+.|+++++.+|...
T Consensus 27 ~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~------~~~~~~-----~~~~~~~~~~---~~~~v~~~~GNHD~~~ 90 (223)
T cd00840 27 FEAFEEIVELAIEEKVDFVLIAGDLFDSNNPS------PEALEL-----LIEALRRLKE---AGIPVFIIAGNHDSPS 90 (223)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCcccCCCCCC------HHHHHH-----HHHHHHHHHH---CCCCEEEecCCCCCcc
Confidence 56688888899999999999999999875421 112222 2223333322 3678999999999754
No 29
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.60 E-value=0.35 Score=49.54 Aligned_cols=100 Identities=14% Similarity=0.154 Sum_probs=66.5
Q ss_pred HHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCCCCCCC
Q 006976 374 PLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVL 453 (623)
Q Consensus 374 pL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~~~~v~ 453 (623)
-|.+|++.-.. +.|.|.|+|.++|.=- |+ .-..++-+ .+..+|..+.. .+++|++||++||-.-...|
T Consensus 18 ~fl~Fl~~~a~-~ad~lyilGDifd~w~-----g~--~~~~~~~~-~V~~~l~~~a~---~G~~v~~i~GN~Dfll~~~f 85 (237)
T COG2908 18 FFLDFLREEAA-QADALYILGDIFDGWI-----GD--DEPPQLHR-QVAQKLLRLAR---KGTRVYYIHGNHDFLLGKRF 85 (237)
T ss_pred HHHHHHHhccc-cCcEEEEechhhhhhh-----cC--CcccHHHH-HHHHHHHHHHh---cCCeEEEecCchHHHHHHHH
Confidence 45666654333 6799999999999621 21 12333333 35555555543 68999999999995422121
Q ss_pred CCCCCCCCCCCCCCceEEecCCcEEEECCEEEEeechHHHH
Q 006976 454 PQPPFDIQPPDIIHQITSLTNPGTFEANQIKVGCCTVDVLK 494 (623)
Q Consensus 454 PQpp~~~~~~~l~~~v~~~~NP~~~~in~v~igvts~Dvl~ 494 (623)
=|+ ...+.++|.|+.+.++|-.+-+.-.|.+-
T Consensus 86 ~~~---------~g~~~l~~~~~~~~l~g~~~Ll~HGD~f~ 117 (237)
T COG2908 86 AQE---------AGGMTLLPDPIVLDLYGKRILLAHGDTFC 117 (237)
T ss_pred Hhh---------cCceEEcCcceeeeecCcEEEEEeCCccc
Confidence 111 13488999999999999999998888653
No 30
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=91.50 E-value=1.6 Score=41.62 Aligned_cols=56 Identities=21% Similarity=0.190 Sum_probs=35.5
Q ss_pred CchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCC
Q 006976 371 YFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDAN 448 (623)
Q Consensus 371 ~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~ 448 (623)
++..|.. .++++.+||+||++|.|.+...+ ..+.. + +.+. . ....+++||+.+|..
T Consensus 10 ~~~~~~~--~~~~~~~~D~vv~~GDl~~~~~~--------~~~~~-----~-~~l~----~--~~~p~~~v~GNHD~~ 65 (188)
T cd07392 10 DVEKLEA--IILKAEEADAVIVAGDITNFGGK--------EAAVE-----I-NLLL----A--IGVPVLAVPGNCDTP 65 (188)
T ss_pred CHHHHHH--HHhhccCCCEEEECCCccCcCCH--------HHHHH-----H-HHHH----h--cCCCEEEEcCCCCCH
Confidence 3455555 56677899999999999875321 11111 1 2222 1 256799999999964
No 31
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=91.08 E-value=1.2 Score=45.63 Aligned_cols=84 Identities=13% Similarity=0.223 Sum_probs=51.9
Q ss_pred CCeEEEEEeCCCcCC--CC-----CCc----hHHHHHHHHHHcc--CCcEEEEeCcccCCCCccccCCCccccHHHHHHH
Q 006976 353 EEISMIIAAGPFTTT--DN-----LYF----EPLKELISYAKRK--QPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHL 419 (623)
Q Consensus 353 ~~l~I~vAsGPft~~--d~-----l~~----epL~~ll~~~~~~--~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~ 419 (623)
++++++++|.|.-.. +. -.| .-|+.+++.+++. +||.||++|.+++..-.. ...++.++
T Consensus 3 ~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~-------~~~~~~~~- 74 (262)
T cd07395 3 GPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGD-------ELRERQVS- 74 (262)
T ss_pred CCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcch-------hhHHHHHH-
Confidence 467788888885542 11 122 2367888888876 999999999998764211 01111122
Q ss_pred HHHHHHHHHHHhcCCceEEEEecCCCCCC
Q 006976 420 EILRRLQDYVEYMGSEVRAILVPSIRDAN 448 (623)
Q Consensus 420 ~il~~l~~~~~~~~~~~~VvlVPS~rD~~ 448 (623)
.+.+.++.....+.++.+|+.+|..
T Consensus 75 ----~~~~~~~~~~~~vp~~~i~GNHD~~ 99 (262)
T cd07395 75 ----DLKDVLSLLDPDIPLVCVCGNHDVG 99 (262)
T ss_pred ----HHHHHHhhccCCCcEEEeCCCCCCC
Confidence 2222222233568899999999985
No 32
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=91.05 E-value=1.2 Score=49.27 Aligned_cols=50 Identities=14% Similarity=0.367 Sum_probs=37.1
Q ss_pred CeEEEEEeCCCcCCCCC-------CchHHHHHHHHHHccCCcEEEEeCcccCCCCcc
Q 006976 354 EISMIIAAGPFTTTDNL-------YFEPLKELISYAKRKQPQLLILLGPFVDSEHPQ 403 (623)
Q Consensus 354 ~l~I~vAsGPft~~d~l-------~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~ 403 (623)
.++|+++|.-.-..... .++.|.++++.+.+.+||+||+.|.+.|...|.
T Consensus 3 ~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~~~Ps 59 (405)
T TIGR00583 3 TIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHENKPS 59 (405)
T ss_pred ceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCC
Confidence 35677776543221100 266889999999999999999999999998875
No 33
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=90.98 E-value=0.72 Score=50.46 Aligned_cols=73 Identities=21% Similarity=0.410 Sum_probs=53.1
Q ss_pred CchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCCCC
Q 006976 371 YFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHD 450 (623)
Q Consensus 371 ~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~~~ 450 (623)
.++.|.++++.+.+.++|+||+.|...|...|.. .+... |.+ ++++|.+ .++.|++|++++|....
T Consensus 25 ~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~------~a~~~-~~~-~l~~l~~------~~Ipv~~I~GNHD~~~~ 90 (390)
T COG0420 25 QKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSP------RALKL-FLE-ALRRLKD------AGIPVVVIAGNHDSPSR 90 (390)
T ss_pred HHHHHHHHHHHHHHccCCEEEEccccccCCCCCH------HHHHH-HHH-HHHHhcc------CCCcEEEecCCCCchhc
Confidence 3778899999999999999999999999988753 22222 221 3334432 48899999999999865
Q ss_pred CCCCCCC
Q 006976 451 FVLPQPP 457 (623)
Q Consensus 451 ~v~PQpp 457 (623)
..+..+-
T Consensus 91 ~~~~~~~ 97 (390)
T COG0420 91 LSEASPL 97 (390)
T ss_pred cccccch
Confidence 5555544
No 34
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=90.22 E-value=0.82 Score=45.20 Aligned_cols=101 Identities=17% Similarity=0.127 Sum_probs=61.7
Q ss_pred HHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCCCCCCCC
Q 006976 375 LKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLP 454 (623)
Q Consensus 375 L~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~~~~v~P 454 (623)
+..++....+.+|+.||++|.++|.-..... .......+.+. .+.+.. ..+++|++|++.+|..-...+.
T Consensus 19 ~~~~~~~~~~~~~~~lvl~GDi~d~~~~~~~--~~~~~~~~~~~-----~l~~~~---~~~~~v~~v~GNHD~~~~~~~~ 88 (217)
T cd07398 19 LLFLLAALALGEADALYLLGDIFDLWFGDDE--VVPPAAHEVLA-----ALLRLA---DRGTRVYYVPGNHDFLLGDFFA 88 (217)
T ss_pred HHHHHhhhccCCCCEEEEeccEEEEEecCCC--CCChHHHHHHH-----HHHHHH---HCCCeEEEECCCchHHHHhHHH
Confidence 4444433334699999999999996432111 01112222111 112222 2688999999999986322211
Q ss_pred CCCCCCCCCCCCCceEEecCCc-EEEECCEEEEeechHHHHh
Q 006976 455 QPPFDIQPPDIIHQITSLTNPG-TFEANQIKVGCCTVDVLKQ 495 (623)
Q Consensus 455 Qpp~~~~~~~l~~~v~~~~NP~-~~~in~v~igvts~Dvl~~ 495 (623)
. ...+..+++|. .+.++|..+.++-.|.+..
T Consensus 89 ~----------~~~~~~~~~~~~~~~~~g~~~~~~HG~~~d~ 120 (217)
T cd07398 89 E----------ELGLILLPDPLVHLELDGKRILLEHGDQFDT 120 (217)
T ss_pred H----------HcCCEEeccceEEEeeCCeEEEEECCCcCch
Confidence 1 12467888998 9999999999988886643
No 35
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=90.21 E-value=1.2 Score=44.60 Aligned_cols=64 Identities=20% Similarity=0.333 Sum_probs=41.1
Q ss_pred HHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCCCCCCCCC
Q 006976 381 YAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLPQ 455 (623)
Q Consensus 381 ~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~~~~v~PQ 455 (623)
.++..+||++|++|.++|.-... -++.+.+ .++++.+... .++++.++.||+.+|+....--|.
T Consensus 37 a~~~l~PD~Vi~lGDL~D~G~~~-----~~~e~~e-----~l~Rf~~If~-~~~~~~~~~VpGNHDIG~~~~~~~ 100 (195)
T cd08166 37 ALNFVQPDIVIFLGDLMDEGSIA-----NDDEYYS-----YVQRFINIFE-VPNGTKIIYLPGDNDIGGEEEDPI 100 (195)
T ss_pred HHhccCCCEEEEeccccCCCCCC-----CHHHHHH-----HHHHHHHHhc-CCCCCcEEEECCCCCcCCCCCCcC
Confidence 34557999999999999975421 0112222 2344444433 357899999999999985433344
No 36
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=88.64 E-value=1.8 Score=43.51 Aligned_cols=58 Identities=19% Similarity=0.438 Sum_probs=41.2
Q ss_pred chHHHHHHHHHHcc--CCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCC
Q 006976 372 FEPLKELISYAKRK--QPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDAN 448 (623)
Q Consensus 372 ~epL~~ll~~~~~~--~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~ 448 (623)
.+.|+.+++.+++. +||+||++|.+++...+ ..++. +.+.+.+ + .+.+++||+.+|..
T Consensus 24 ~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~--------~~~~~-----~~~~l~~----~--~~p~~~v~GNHD~~ 83 (240)
T cd07402 24 AASLEAVLAHINALHPRPDLVLVTGDLTDDGSP--------ESYER-----LRELLAA----L--PIPVYLLPGNHDDR 83 (240)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEECccCCCCCCH--------HHHHH-----HHHHHhh----c--CCCEEEeCCCCCCH
Confidence 56788999999887 99999999999986321 12222 2222332 2 56799999999984
No 37
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=88.48 E-value=1.3 Score=42.43 Aligned_cols=64 Identities=16% Similarity=0.247 Sum_probs=39.6
Q ss_pred HHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCCC
Q 006976 375 LKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANH 449 (623)
Q Consensus 375 L~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~~ 449 (623)
.+.+.+.++..+||.||++|.++|..... -...+.+.+. .+.+.+.. .....+++||+.+|...
T Consensus 27 ~~~~~~~i~~~~pd~vv~~GDl~~~~~~~-----~~~~~~~~~~-----~~~~~~~~-~~~~~i~~v~GNHD~~~ 90 (156)
T cd08165 27 ERSFQTSLWLLQPDVVFVLGDLFDEGKWS-----TDEEWEDYVE-----RFKKMFGH-PPDLPLHVVVGNHDIGF 90 (156)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCCCccC-----CHHHHHHHHH-----HHHHHhcc-CCCCeEEEEcCCCCcCC
Confidence 33555566778999999999999864321 1122333222 22322221 13678999999999864
No 38
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=88.00 E-value=1.4 Score=40.71 Aligned_cols=57 Identities=25% Similarity=0.439 Sum_probs=37.7
Q ss_pred HHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCC
Q 006976 375 LKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDA 447 (623)
Q Consensus 375 L~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~ 447 (623)
|..+++.+++.+||.||++|.+++...+ ..++.+ .+ +++++.. ....+.+||+.+|.
T Consensus 24 l~~~~~~~~~~~~d~vi~~GDl~~~~~~--------~~~~~~-~~-~~~~l~~------~~~~~~~v~GNHD~ 80 (144)
T cd07400 24 LDRLLAEIKALDPDLVVITGDLTQRGLP--------EEFEEA-RE-FLDALPA------PLEPVLVVPGNHDV 80 (144)
T ss_pred HHHHHHHHhccCCCEEEECCCCCCCCCH--------HHHHHH-HH-HHHHccc------cCCcEEEeCCCCeE
Confidence 6677888889999999999999886421 223222 11 2322221 11589999999994
No 39
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=87.81 E-value=3 Score=40.98 Aligned_cols=60 Identities=15% Similarity=0.244 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCC
Q 006976 373 EPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRD 446 (623)
Q Consensus 373 epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD 446 (623)
..+..+.+.+++.+||.+|++|.+++...+. .... ..++. +++.+.+ ..+.+.++|+.+|
T Consensus 28 ~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~------~~~~-~~~~~-~~~~l~~------~~~p~~~~~GNHD 87 (199)
T cd07383 28 KTVAFIERVLDAEKPDLVVLTGDLITGENTN------DNST-SALDK-AVSPMID------RKIPWAATFGNHD 87 (199)
T ss_pred HHHHHHHHHHhhcCCCEEEECCccccCCCCc------hHHH-HHHHH-HHHHHHH------cCCCEEEECccCC
Confidence 4455555567788999999999999865431 0112 22232 3333321 3678999999999
No 40
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=87.75 E-value=2 Score=44.45 Aligned_cols=78 Identities=18% Similarity=0.260 Sum_probs=50.1
Q ss_pred EEEEEeCCCcCCCC----C----CchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHH
Q 006976 356 SMIIAAGPFTTTDN----L----YFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQD 427 (623)
Q Consensus 356 ~I~vAsGPft~~d~----l----~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~ 427 (623)
+|++.|.+....+. . ..+.|...++.+++.+||.||.+|..++...+. ..+.++. +.+.+.+
T Consensus 2 r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~~~-----~~~~~~~-----~~~~l~~ 71 (267)
T cd07396 2 RFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLDFVVQLGDIIDGDNAR-----AEEALDA-----VLAILDR 71 (267)
T ss_pred eEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCCEEEECCCeecCCCch-----HHHHHHH-----HHHHHHh
Confidence 46677777533221 1 357788889999988999999999998654321 1122222 2222322
Q ss_pred HHHhcCCceEEEEecCCCCCCC
Q 006976 428 YVEYMGSEVRAILVPSIRDANH 449 (623)
Q Consensus 428 ~~~~~~~~~~VvlVPS~rD~~~ 449 (623)
+ ++.+.++|+.+|...
T Consensus 72 ----l--~~p~~~v~GNHD~~~ 87 (267)
T cd07396 72 ----L--KGPVHHVLGNHDLYN 87 (267)
T ss_pred ----c--CCCEEEecCcccccc
Confidence 2 467999999999863
No 41
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=86.49 E-value=3.3 Score=43.05 Aligned_cols=77 Identities=8% Similarity=0.255 Sum_probs=50.4
Q ss_pred CCeEEEEEeCCCcCCC-C------CCchHHHHHHHHHHcc--CCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHH
Q 006976 353 EEISMIIAAGPFTTTD-N------LYFEPLKELISYAKRK--QPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILR 423 (623)
Q Consensus 353 ~~l~I~vAsGPft~~d-~------l~~epL~~ll~~~~~~--~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~ 423 (623)
.+++|+..|......+ . -.++.|+.+++.++.. +||.||+.|.+++... .+.++.+ .+
T Consensus 13 ~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~--------~~~~~~~-----~~ 79 (275)
T PRK11148 13 ARVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHS--------SEAYQHF-----AE 79 (275)
T ss_pred CCEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCC--------HHHHHHH-----HH
Confidence 5688888888874321 1 1246688888888764 6999999999988421 1233332 22
Q ss_pred HHHHHHHhcCCceEEEEecCCCCCC
Q 006976 424 RLQDYVEYMGSEVRAILVPSIRDAN 448 (623)
Q Consensus 424 ~l~~~~~~~~~~~~VvlVPS~rD~~ 448 (623)
.+.+ + .+.+++||+.+|.-
T Consensus 80 ~l~~----l--~~Pv~~v~GNHD~~ 98 (275)
T PRK11148 80 GIAP----L--RKPCVWLPGNHDFQ 98 (275)
T ss_pred HHhh----c--CCcEEEeCCCCCCh
Confidence 2332 2 45799999999973
No 42
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=86.20 E-value=2.2 Score=41.51 Aligned_cols=66 Identities=15% Similarity=0.293 Sum_probs=41.0
Q ss_pred HHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcC---CceEEEEecCCCCCCC
Q 006976 374 PLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMG---SEVRAILVPSIRDANH 449 (623)
Q Consensus 374 pL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~---~~~~VvlVPS~rD~~~ 449 (623)
-++.+-..++..+||.||++|.++|.....- ...+.+.++ ++.++..... ..+.+++||+++|..-
T Consensus 33 ~~~~~~~~i~~~~pd~vi~lGDl~d~~~~~~-----~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~GNHD~g~ 101 (171)
T cd07384 33 MRRAFKTALQRLKPDVVLFLGDLFDGGRIAD-----SEEWEEYVK-----RFKKIFFLPSNGLEDIPVYYVPGNHDIGY 101 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEeccccCCcEeCC-----HHHHHHHHH-----HHHHHhcccccccCCceEEEECCccccCC
Confidence 3445555667799999999999999754320 122333332 2333322111 1678999999999974
No 43
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=86.17 E-value=3.3 Score=42.26 Aligned_cols=77 Identities=17% Similarity=0.276 Sum_probs=51.9
Q ss_pred EEEEEeCCCcC-CCCCCchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCC
Q 006976 356 SMIIAAGPFTT-TDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGS 434 (623)
Q Consensus 356 ~I~vAsGPft~-~d~l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~ 434 (623)
+|+..|.+... ......+.+..+++.++...||.||+.|.+.+. | ....++.+ .++++....
T Consensus 2 ~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~-------~-~~~~~~~~---------~~~l~~~~~ 64 (301)
T COG1409 2 RIAHISDLHLGALGVDSEELLEALLAAIEQLKPDLLVVTGDLTND-------G-EPEEYRRL---------KELLARLEL 64 (301)
T ss_pred eEEEEecCcccccccchHHHHHHHHHHHhcCCCCEEEEccCcCCC-------C-CHHHHHHH---------HHHHhhccC
Confidence 35555666554 356678899999999999999999999977554 1 12233332 222222234
Q ss_pred ceEEEEecCCCCCCC
Q 006976 435 EVRAILVPSIRDANH 449 (623)
Q Consensus 435 ~~~VvlVPS~rD~~~ 449 (623)
...+++||+.+|+-.
T Consensus 65 ~~~~~~vpGNHD~~~ 79 (301)
T COG1409 65 PAPVIVVPGNHDARV 79 (301)
T ss_pred CCceEeeCCCCcCCc
Confidence 678999999999863
No 44
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=85.36 E-value=2.6 Score=37.69 Aligned_cols=79 Identities=15% Similarity=0.291 Sum_probs=46.5
Q ss_pred eEEEEEeCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCC
Q 006976 355 ISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGS 434 (623)
Q Consensus 355 l~I~vAsGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~ 434 (623)
++|++.+..........+ .+..+.......+||.+|++|.++|.....- .....+. ...... ..
T Consensus 1 ~ri~~isD~H~~~~~~~~-~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~-------~~~~~~~-----~~~~~~---~~ 64 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSD-AFRKLDEIAAENKPDFIIFLGDLVDGGNPSE-------EWRAQFW-----FFIRLL---NP 64 (200)
T ss_dssp EEEEEEEBBTTTHHHHCH-HHHHHHHHHHHTTTSEEEEESTSSSSSSHHH-------HHHHHHH-----HHHHHH---HT
T ss_pred CeEEEEcCCCCCCcchhH-HHHHHHHHhccCCCCEEEeeccccccccccc-------cchhhhc-----cchhhh---hc
Confidence 467777765443222222 2455666777899999999999999765320 1111000 001111 15
Q ss_pred ceEEEEecCCCCCCC
Q 006976 435 EVRAILVPSIRDANH 449 (623)
Q Consensus 435 ~~~VvlVPS~rD~~~ 449 (623)
...++++++.+|...
T Consensus 65 ~~~~~~~~GNHD~~~ 79 (200)
T PF00149_consen 65 KIPVYFILGNHDYYS 79 (200)
T ss_dssp TTTEEEEE-TTSSHH
T ss_pred cccccccccccccce
Confidence 778999999999974
No 45
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=83.69 E-value=3.5 Score=39.75 Aligned_cols=63 Identities=24% Similarity=0.310 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCCCC
Q 006976 373 EPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHD 450 (623)
Q Consensus 373 epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~~~ 450 (623)
+-+..+.+.+.+.+||.||++|.+++..... ...+ +.. +. +... ....++|++|++++|....
T Consensus 28 ~~~~~l~~~~~~~~~d~lii~GDl~~~~~~~--------~~~~-~~~--~~-~~~~---~~~~~~v~~i~GNHD~~~~ 90 (172)
T cd07391 28 DTLERLDRLIEEYGPERLIILGDLKHSFGGL--------SRQE-FEE--VA-FLRL---LAKDVDVILIRGNHDGGLP 90 (172)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccccccc--------CHHH-HHH--HH-HHHh---ccCCCeEEEEcccCccchh
Confidence 5677777888889999999999999864321 1111 111 11 1111 2357899999999998753
No 46
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=82.66 E-value=2.7 Score=43.37 Aligned_cols=66 Identities=11% Similarity=0.158 Sum_probs=39.7
Q ss_pred HHHHHHHHccCCcEEEEeCcccCCCCcc-ccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCC
Q 006976 376 KELISYAKRKQPQLLILLGPFVDSEHPQ-IKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDAN 448 (623)
Q Consensus 376 ~~ll~~~~~~~PdvlIL~GPFvD~~h~~-i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~ 448 (623)
..+++.+++.+||++|++|.++|..... +...+ +...+. .+++.+.+.. .-....++.||+.+|..
T Consensus 23 ~~~~~~i~~~~pd~i~~~GD~~d~~~~~~~~~~~----~~~~~~-~~~~~~~~~~--~~~~~p~~~v~GNHD~~ 89 (256)
T cd07401 23 TFCSNFIDVIKPALVLATGDLTDNKTGNKLPSYQ----YQEEWQ-KYYNILKESS--VINKEKWFDIRGNHDLF 89 (256)
T ss_pred HHHHHHHHhhCCCEEEEccccccccccCCCcccc----cHHHHH-HHHHHHHHhC--CCCcceEEEeCCCCCcC
Confidence 5677788899999999999999975431 11111 111111 1222222210 01257899999999995
No 47
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=81.03 E-value=8 Score=38.76 Aligned_cols=75 Identities=16% Similarity=0.255 Sum_probs=44.4
Q ss_pred EEEEEeCCCcCCCCCCchHH----HHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHh
Q 006976 356 SMIIAAGPFTTTDNLYFEPL----KELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEY 431 (623)
Q Consensus 356 ~I~vAsGPft~~d~l~~epL----~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~ 431 (623)
+|++.+.+-...+ ...+.+ +.+++.+++.+||.+|++|.++|.... ...++.+.+ +++.|.+
T Consensus 2 ~~~~~~D~q~~~~-~~~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~-------~~~~~~~~~--~~~~l~~---- 67 (214)
T cd07399 2 TLAVLPDTQYYTE-SYPEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDN-------DAEWEAADK--AFARLDK---- 67 (214)
T ss_pred EEEEecCCCcCCc-CCHHHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCC-------HHHHHHHHH--HHHHHHH----
Confidence 4666666543332 233344 444455556789999999999985431 123333322 3333331
Q ss_pred cCCceEEEEecCCCC
Q 006976 432 MGSEVRAILVPSIRD 446 (623)
Q Consensus 432 ~~~~~~VvlVPS~rD 446 (623)
..+.+.++|+.+|
T Consensus 68 --~~~p~~~~~GNHD 80 (214)
T cd07399 68 --AGIPYSVLAGNHD 80 (214)
T ss_pred --cCCcEEEECCCCc
Confidence 3577999999999
No 48
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=80.79 E-value=5.7 Score=43.98 Aligned_cols=90 Identities=19% Similarity=0.333 Sum_probs=57.7
Q ss_pred CCCeEEEEEeCCCcCCCCCCchHHHHHHHHHH--------------ccCCcEEEEeCcccC-CCCccccCCCccccHHHH
Q 006976 352 PEEISMIIAAGPFTTTDNLYFEPLKELISYAK--------------RKQPQLLILLGPFVD-SEHPQIKKGTTDSSFDEI 416 (623)
Q Consensus 352 ~~~l~I~vAsGPft~~d~l~~epL~~ll~~~~--------------~~~PdvlIL~GPFvD-~~h~~i~~g~~~~t~~~l 416 (623)
+..++|+..|.|---+ +..+..+.-.|++.. -.+||+++++|..+| ..+- + ++-
T Consensus 46 ~n~~ki~~vaDPQilg-~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~----~------~eE 114 (410)
T KOG3662|consen 46 ENSTKILLVADPQILG-NWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWA----G------DEE 114 (410)
T ss_pred CCceEEEEecCchhcC-CCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccccCccC----C------hHH
Confidence 4678999999997643 334444444443321 169999999999999 4331 1 223
Q ss_pred HHHHHHHHHHHHHHhcCCceEEEEecCCCCCCCC-CCCC
Q 006976 417 FHLEILRRLQDYVEYMGSEVRAILVPSIRDANHD-FVLP 454 (623)
Q Consensus 417 F~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~~~-~v~P 454 (623)
|++ -.+++.++... ..+.+++.+|+.+|+.-+ .+.|
T Consensus 115 f~~-~~~RfkkIf~~-k~~~~~~~i~GNhDIGf~~~~~~ 151 (410)
T KOG3662|consen 115 FKK-RYERFKKIFGR-KGNIKVIYIAGNHDIGFGNELIP 151 (410)
T ss_pred HHH-HHHHHHHhhCC-CCCCeeEEeCCccccccccccch
Confidence 443 34455555432 248999999999999744 3555
No 49
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=80.16 E-value=7.6 Score=39.42 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=38.0
Q ss_pred HHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCC
Q 006976 374 PLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDAN 448 (623)
Q Consensus 374 pL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~ 448 (623)
-|..+++.+++.+||+||++|.+++.- + . ...+ ++.+.+. ....|++||+.+|..
T Consensus 20 ~l~~~~~~~~~~~~d~vv~~GDl~~~~-~--------~-~~~~-----~~~l~~~-----~~~pv~~v~GNHD~~ 74 (239)
T TIGR03729 20 MLETLAQYLKKQKIDHLHIAGDISNDF-Q--------R-SLPF-----IEKLQEL-----KGIKVTFNAGNHDML 74 (239)
T ss_pred HHHHHHHHHHhcCCCEEEECCccccch-h--------h-HHHH-----HHHHHHh-----cCCcEEEECCCCCCC
Confidence 477888889888999999999998741 1 1 1122 2222221 256899999999974
No 50
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=77.29 E-value=24 Score=32.90 Aligned_cols=73 Identities=19% Similarity=0.200 Sum_probs=47.8
Q ss_pred cCccEEEEEEEEECC---CCCCCCceEEEeeccCCCCCeEEEeecCCCCcccccCCCEEEEEeecCCCCeEEEeEeccCC
Q 006976 245 SQRTLFAVGMICCDG---DGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASKLVDQI 321 (623)
Q Consensus 245 s~~~v~vvGrI~~d~---egkLn~~sv~LE~s~~~~~G~rV~Ldls~l~~~slFPGQIV~v~G~n~~G~~f~V~ei~~~~ 321 (623)
....+.+-|.|..++ +..-+.-+..|.+ .+..+++-.....-..|-.||-|.++|+...++.|++++|+.-.
T Consensus 49 ~~~~vrv~G~V~~gSv~~~~~~~~~~F~i~D-----~~~~i~V~Y~G~~Pd~F~eg~~VVv~G~~~~~g~F~A~~lL~Kc 123 (131)
T PF03100_consen 49 VGRKVRVGGLVVEGSVEYDPDGNTLTFTITD-----GGKEIPVVYTGPLPDLFREGQGVVVEGRLGEDGVFEATELLAKC 123 (131)
T ss_dssp TTSEEEEEEEEECTTEEE-TTSSEEEEEEE------SS-EEEEEEES--CTT--TTSEEEEEEEECCTSEEEEEEEEETS
T ss_pred CCceEEEeeEEccCCEEEcCCCCEEEEEEEE-----CCcEEEEEECCCCCccccCCCeEEEEEEECCCCEEEEEEEEeCC
Confidence 567899999998543 1112223445542 25578888777666656699999999999778899999999644
Q ss_pred C
Q 006976 322 P 322 (623)
Q Consensus 322 P 322 (623)
|
T Consensus 124 p 124 (131)
T PF03100_consen 124 P 124 (131)
T ss_dssp -
T ss_pred C
Confidence 3
No 51
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=73.33 E-value=11 Score=39.24 Aligned_cols=55 Identities=16% Similarity=0.232 Sum_probs=32.9
Q ss_pred ccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCC
Q 006976 384 RKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDAN 448 (623)
Q Consensus 384 ~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~ 448 (623)
..+||++|++|.++|..... .+.-+.+- ++++.+++........++.||+.+|+.
T Consensus 43 ~l~PD~vv~lGDL~d~G~~~-----~~~~~~~~-----~~rf~~i~~~~~~~~pv~~VpGNHDig 97 (257)
T cd08163 43 QLKPDSTIFLGDLFDGGRDW-----ADEYWKKE-----YNRFMRIFDPSPGRKMVESLPGNHDIG 97 (257)
T ss_pred hcCCCEEEEecccccCCeeC-----cHHHHHHH-----HHHHHHHhcCCCccceEEEeCCCcccC
Confidence 36899999999999853211 11122222 223333332222357899999999984
No 52
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=66.46 E-value=28 Score=36.32 Aligned_cols=88 Identities=14% Similarity=0.177 Sum_probs=52.5
Q ss_pred EEeCCCcCCC-CCCchHHHHHHHHHHcc--CCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCc
Q 006976 359 IAAGPFTTTD-NLYFEPLKELISYAKRK--QPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSE 435 (623)
Q Consensus 359 vAsGPft~~d-~l~~epL~~ll~~~~~~--~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~ 435 (623)
..+|+|-.-. +.-+..++..++.+++. +||.+|++|..++-....- ..+.......+.+.+.+.+ .-+.
T Consensus 38 ~~~~~~G~~~CD~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~----~~~~~~~~~~~~~~~~l~~----~~~~ 109 (296)
T cd00842 38 PPAGPWGDYGCDSPWRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQ----TPETLVLISISNLTSLLKK----AFPD 109 (296)
T ss_pred CCCCCCcCcCCCCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhh----chhHHHHHHHHHHHHHHHH----hCCC
Confidence 4566665332 23467788899988887 9999999999987543210 0011110001112222332 2358
Q ss_pred eEEEEecCCCCCCCCCCCC
Q 006976 436 VRAILVPSIRDANHDFVLP 454 (623)
Q Consensus 436 ~~VvlVPS~rD~~~~~v~P 454 (623)
+.|+.+++.+|......++
T Consensus 110 ~pv~~~~GNHD~~p~~~~~ 128 (296)
T cd00842 110 TPVYPALGNHDSYPVNQFP 128 (296)
T ss_pred CCEEEcCCCCCCCcccccC
Confidence 8999999999987544443
No 53
>PHA02239 putative protein phosphatase
Probab=63.63 E-value=25 Score=36.06 Aligned_cols=70 Identities=11% Similarity=0.294 Sum_probs=44.2
Q ss_pred EEEEEeCCCcCCCCCCchHHHHHHHHHHcc--CCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcC
Q 006976 356 SMIIAAGPFTTTDNLYFEPLKELISYAKRK--QPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMG 433 (623)
Q Consensus 356 ~I~vAsGPft~~d~l~~epL~~ll~~~~~~--~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~ 433 (623)
++++.|.-.- .|+.|..+++.+... ..|.||++|.+||.- |. +. + ++..+.++..
T Consensus 2 ~~~~IsDIHG-----~~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG-~~--------s~-~-----v~~~l~~~~~--- 58 (235)
T PHA02239 2 AIYVVPDIHG-----EYQKLLTIMDKINNERKPEETIVFLGDYVDRG-KR--------SK-D-----VVNYIFDLMS--- 58 (235)
T ss_pred eEEEEECCCC-----CHHHHHHHHHHHhhcCCCCCEEEEecCcCCCC-CC--------hH-H-----HHHHHHHHhh---
Confidence 3555555432 477899999998654 359999999999942 21 11 2 2222333222
Q ss_pred CceEEEEecCCCCCC
Q 006976 434 SEVRAILVPSIRDAN 448 (623)
Q Consensus 434 ~~~~VvlVPS~rD~~ 448 (623)
....+++|++++|..
T Consensus 59 ~~~~~~~l~GNHE~~ 73 (235)
T PHA02239 59 NDDNVVTLLGNHDDE 73 (235)
T ss_pred cCCCeEEEECCcHHH
Confidence 234688999999974
No 54
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=63.35 E-value=26 Score=37.08 Aligned_cols=81 Identities=16% Similarity=0.225 Sum_probs=54.5
Q ss_pred CCeEEEEEeCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhc
Q 006976 353 EEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYM 432 (623)
Q Consensus 353 ~~l~I~vAsGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~ 432 (623)
.+++|+..|+-+.. .+. +...+++..+.+..||++++.|.++|..++. .... .+..|.++.
T Consensus 43 ~~~~iv~lSDlH~~--~~~-~~~~~~~~~i~~~~~DlivltGD~~~~~~~~--------~~~~-----~~~~L~~L~--- 103 (284)
T COG1408 43 QGLKIVQLSDLHSL--PFR-EEKLALLIAIANELPDLIVLTGDYVDGDRPP--------GVAA-----LALFLAKLK--- 103 (284)
T ss_pred CCeEEEEeehhhhc--hhh-HHHHHHHHHHHhcCCCEEEEEeeeecCCCCC--------CHHH-----HHHHHHhhh---
Confidence 56779999876542 222 6777888888888999999999999973321 2222 233344433
Q ss_pred CCceEEEEecCCCCCCCCCCC
Q 006976 433 GSEVRAILVPSIRDANHDFVL 453 (623)
Q Consensus 433 ~~~~~VvlVPS~rD~~~~~v~ 453 (623)
..-.|+.|.+++|-....+-
T Consensus 104 -~~~gv~av~GNHd~~~~~~~ 123 (284)
T COG1408 104 -APLGVFAVLGNHDYGVDRSN 123 (284)
T ss_pred -ccCCEEEEeccccccccccc
Confidence 34569999999988755443
No 55
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=62.75 E-value=60 Score=31.15 Aligned_cols=75 Identities=15% Similarity=0.108 Sum_probs=51.5
Q ss_pred ccCccEEEEEEEEECC-CC-CCCCceEEEeeccCCCCCeEEEeecCCCCcccccCCCEEEEEeecCCCCeEEEeEeccCC
Q 006976 244 ASQRTLFAVGMICCDG-DG-HLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASKLVDQI 321 (623)
Q Consensus 244 ~s~~~v~vvGrI~~d~-eg-kLn~~sv~LE~s~~~~~G~rV~Ldls~l~~~slFPGQIV~v~G~n~~G~~f~V~ei~~~~ 321 (623)
.....+.+-|+|.-.+ +- .-+.-+..|.+ .+..+++....+.--.|-.||-|+++|+-..++.|.+++|+.-.
T Consensus 49 ~~g~~vrvgG~V~~gSi~~~~~~~~~F~ltD-----~~~~i~V~Y~G~lPd~F~eg~~VVv~G~~~~~g~F~A~~vLaKc 123 (148)
T PRK13254 49 PAGRRFRLGGLVEKGSVQRGDGLTVRFVVTD-----GNATVPVVYTGILPDLFREGQGVVAEGRLQDGGVFVADEVLAKH 123 (148)
T ss_pred cCCCeEEEeEEEecCcEEeCCCCEEEEEEEe-----CCeEEEEEECCCCCccccCCCEEEEEEEECCCCeEEEEEEEecC
Confidence 4567899999998543 10 11112344432 25577777776655556689999999998777799999999766
Q ss_pred CC
Q 006976 322 PL 323 (623)
Q Consensus 322 Pl 323 (623)
|-
T Consensus 124 ~s 125 (148)
T PRK13254 124 DE 125 (148)
T ss_pred CC
Confidence 64
No 56
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=62.17 E-value=20 Score=36.40 Aligned_cols=57 Identities=9% Similarity=0.069 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHcc--CCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCC
Q 006976 373 EPLKELISYAKRK--QPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDAN 448 (623)
Q Consensus 373 epL~~ll~~~~~~--~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~ 448 (623)
+.+.++...++.. +||+||++|.+.+... .++..+ .++.|. +.+ . .+++||+++|..
T Consensus 26 ~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~-----------~~~~~~--~l~~l~----~l~-~-~v~~V~GNHD~~ 84 (232)
T cd07393 26 NHTEKIKENWDNVVAPEDIVLIPGDISWAMK-----------LEEAKL--DLAWID----ALP-G-TKVLLKGNHDYW 84 (232)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEcCCCccCCC-----------hHHHHH--HHHHHH----hCC-C-CeEEEeCCcccc
Confidence 3455555555554 9999999999974321 122111 222222 222 2 489999999973
No 57
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=59.90 E-value=27 Score=37.11 Aligned_cols=54 Identities=22% Similarity=0.413 Sum_probs=40.6
Q ss_pred CCCcCCCCCCchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCc-cccHHHHHHHHHHHHHHH
Q 006976 362 GPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTT-DSSFDEIFHLEILRRLQD 427 (623)
Q Consensus 362 GPft~~d~l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~-~~t~~~lF~~~il~~l~~ 427 (623)
=||+.+..+||+.|.++++++.+...|-|+++| ..|+. ..|.+|- +++++...+
T Consensus 14 TPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~G----------ttGE~~~Ls~eEr--~~v~~~~v~ 68 (299)
T COG0329 14 TPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLG----------TTGESPTLTLEER--KEVLEAVVE 68 (299)
T ss_pred cCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECC----------CCccchhcCHHHH--HHHHHHHHH
Confidence 389987889999999999999999999999999 33554 3566663 234444443
No 58
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=59.32 E-value=36 Score=34.03 Aligned_cols=64 Identities=19% Similarity=0.277 Sum_probs=37.1
Q ss_pred HHHHHHHHH-ccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhc----------------CCceE
Q 006976 375 LKELISYAK-RKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYM----------------GSEVR 437 (623)
Q Consensus 375 L~~ll~~~~-~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~----------------~~~~~ 437 (623)
|....+.+. ..+||+++++|..+|... +. ++.|++- ..+..+..-.- ..++.
T Consensus 32 L~~~~~~~~~~l~Pd~V~fLGDLfd~~w--~~----D~ef~~~-----~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~ 100 (193)
T cd08164 32 LGHIVSMMQFWLKPDAVVVLGDLFSSQW--ID----DEEFAKR-----ADRYRRRFFGRNDWQVGNISLAARTFEDGKTP 100 (193)
T ss_pred HHHHHHHHHHhcCCCEEEEeccccCCCc--cc----HHHHHHH-----HHHHHHHhcCCcccccccccccccccccCCce
Confidence 344444333 379999999999998743 21 1222222 22233222100 02589
Q ss_pred EEEecCCCCCCC
Q 006976 438 AILVPSIRDANH 449 (623)
Q Consensus 438 VvlVPS~rD~~~ 449 (623)
+++||+.+|+..
T Consensus 101 ~i~V~GNHDIG~ 112 (193)
T cd08164 101 LINIAGNHDVGY 112 (193)
T ss_pred EEEECCcccCCC
Confidence 999999999975
No 59
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=59.21 E-value=31 Score=35.86 Aligned_cols=32 Identities=25% Similarity=0.543 Sum_probs=30.0
Q ss_pred CCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 363 PFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 363 Pft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
||+.+..+|++.+.++++++.+...|.++++|
T Consensus 8 Pf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~G 39 (281)
T cd00408 8 PFTADGEVDLDALRRLVEFLIEAGVDGLVVLG 39 (281)
T ss_pred CcCCCCCcCHHHHHHHHHHHHHcCCCEEEECC
Confidence 88888899999999999999999999999999
No 60
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=59.02 E-value=34 Score=34.24 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=41.1
Q ss_pred CchHHHHHHHHHH--------ccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEec
Q 006976 371 YFEPLKELISYAK--------RKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVP 442 (623)
Q Consensus 371 ~~epL~~ll~~~~--------~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVP 442 (623)
+|+.|..+++.++ ..+.|.||++|.++|.-. . -.++++. +..+.... .....+|++|.
T Consensus 9 ~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~-~---------~~~vl~~--l~~l~~~~--~~~~~~v~~l~ 74 (208)
T cd07425 9 DLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGP-D---------VIEILWL--LYKLEQEA--AKAGGKVHFLL 74 (208)
T ss_pred CHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCc-C---------HHHHHHH--HHHHHHHH--HhcCCeEEEee
Confidence 5788999998775 357899999999999531 1 1122221 22222111 11357899999
Q ss_pred CCCCCC
Q 006976 443 SIRDAN 448 (623)
Q Consensus 443 S~rD~~ 448 (623)
+++|..
T Consensus 75 GNHE~~ 80 (208)
T cd07425 75 GNHELM 80 (208)
T ss_pred CCCcHH
Confidence 999975
No 61
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=58.73 E-value=29 Score=36.40 Aligned_cols=36 Identities=22% Similarity=0.491 Sum_probs=32.3
Q ss_pred EeCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeCc
Q 006976 360 AAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGP 395 (623)
Q Consensus 360 AsGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~GP 395 (623)
.-=||+.+..+|++.|.++++++.+...|-++++|-
T Consensus 9 ~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs 44 (292)
T PRK03170 9 LVTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGT 44 (292)
T ss_pred eeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCc
Confidence 344899999999999999999999999999999983
No 62
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=55.24 E-value=35 Score=36.18 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=31.2
Q ss_pred CCCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 362 GPFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 362 GPft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
=||+.+..+|++.|..+++++.+...|-++++|
T Consensus 17 TPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~G 49 (303)
T PRK03620 17 TPFDADGSFDEAAYREHLEWLAPYGAAALFAAG 49 (303)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 489989999999999999999999999999999
No 63
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=55.15 E-value=36 Score=35.98 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=30.9
Q ss_pred CCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 363 PFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 363 Pft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
||+.+..+|++.|..+++++.+...|-|+++|
T Consensus 11 Pf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~G 42 (294)
T TIGR02313 11 PFKRNGDIDEEALRELIEFQIEGGSHAISVGG 42 (294)
T ss_pred CcCCCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 89999999999999999999999999999999
No 64
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=54.82 E-value=35 Score=35.89 Aligned_cols=34 Identities=9% Similarity=0.128 Sum_probs=31.4
Q ss_pred CCCcCCCCCCchHHHHHHHHHHccCCcEEEEeCc
Q 006976 362 GPFTTTDNLYFEPLKELISYAKRKQPQLLILLGP 395 (623)
Q Consensus 362 GPft~~d~l~~epL~~ll~~~~~~~PdvlIL~GP 395 (623)
=||+.+..+|++.|..+++++.+...|-++++|=
T Consensus 10 TPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~Gs 43 (289)
T cd00951 10 THFDADGSFDEDAYRAHVEWLLSYGAAALFAAGG 43 (289)
T ss_pred cCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcC
Confidence 3899899999999999999999999999999993
No 65
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=54.54 E-value=38 Score=30.96 Aligned_cols=48 Identities=15% Similarity=0.235 Sum_probs=29.0
Q ss_pred HccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCC
Q 006976 383 KRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDAN 448 (623)
Q Consensus 383 ~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~ 448 (623)
+..+||++|++|.|.+...+ ..++. +++.+. ..+ ...+++||+..|..
T Consensus 16 ~~~~~D~vi~~GD~~~~~~~--------~~~~~-----~~~~l~----~~~-~~~~~~v~GNHD~~ 63 (135)
T cd07379 16 SIPDGDVLIHAGDLTERGTL--------EELQK-----FLDWLK----SLP-HPHKIVIAGNHDLT 63 (135)
T ss_pred cCCCCCEEEECCCCCCCCCH--------HHHHH-----HHHHHH----hCC-CCeEEEEECCCCCc
Confidence 45789999999999875321 11221 222222 222 33467899999964
No 66
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=54.06 E-value=26 Score=36.05 Aligned_cols=63 Identities=19% Similarity=0.210 Sum_probs=37.0
Q ss_pred HHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCCC
Q 006976 376 KELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANH 449 (623)
Q Consensus 376 ~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~~ 449 (623)
..+.+.+.+.+||.+|++|.++......- +-+..+.+-|+. ++..+. ..+.++.+|+.+|...
T Consensus 22 ~~~~~~~~~~~~dfvv~~GD~~y~~g~~~---~~~~~~~~~~~~-~~~~~~-------~~~P~~~v~GNHD~~~ 84 (277)
T cd07378 22 KAMAKVAAELGPDFILSLGDNFYDDGVGS---VDDPRFETTFED-VYSAPS-------LQVPWYLVLGNHDYSG 84 (277)
T ss_pred HHHHHHHHhcCCCEEEeCCCccccCCCCC---CcchHHHHHHHH-Hccchh-------hcCCeEEecCCcccCC
Confidence 33444555689999999999875443211 111223333332 222221 3568999999999863
No 67
>PLN02417 dihydrodipicolinate synthase
Probab=53.97 E-value=39 Score=35.45 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=30.7
Q ss_pred CCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 363 PFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 363 Pft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
||+.+..+|++.|.++++++.+...|-++++|
T Consensus 12 Pf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~G 43 (280)
T PLN02417 12 PYLPDGRFDLEAYDSLVNMQIENGAEGLIVGG 43 (280)
T ss_pred CcCCCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 89988999999999999999999999999999
No 68
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=53.96 E-value=66 Score=30.76 Aligned_cols=86 Identities=16% Similarity=0.104 Sum_probs=51.8
Q ss_pred HHHHHHHHHc--cCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCCCCCC
Q 006976 375 LKELISYAKR--KQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFV 452 (623)
Q Consensus 375 L~~ll~~~~~--~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~~~~v 452 (623)
...+++.+++ .++|.||++|.+++.... ... ++.+.+ . ...+++|++++|......
T Consensus 29 ~~~~i~~~~~~~~~~d~vi~~GDl~~~~~~-----------~~~-----~~~l~~----~--~~~~~~v~GNHD~~~~~~ 86 (168)
T cd07390 29 DEALIRNWNETVGPDDTVYHLGDFSFGGKA-----------GTE-----LELLSR----L--NGRKHLIKGNHDSSLERK 86 (168)
T ss_pred HHHHHHHHhhhcCCCCEEEEeCCCCCCCCh-----------HHH-----HHHHHh----C--CCCeEEEeCCCCchhhhc
Confidence 3556666665 378999999999875321 111 111221 1 236999999999764222
Q ss_pred CCCCCCCCCCCCCCCceEEecCCcEEEECCEEEEeechH
Q 006976 453 LPQPPFDIQPPDIIHQITSLTNPGTFEANQIKVGCCTVD 491 (623)
Q Consensus 453 ~PQpp~~~~~~~l~~~v~~~~NP~~~~in~v~igvts~D 491 (623)
+.+ +. .....++....+.+++..|.++-..
T Consensus 87 ~~~--~~-------~~~~~~~~~~~~~~~~~~i~l~H~~ 116 (168)
T cd07390 87 LLA--FL-------LKFESVLQAVRLKIGGRRVYLSHYP 116 (168)
T ss_pred ccc--cc-------cccceeeeEEEEEECCEEEEEEeCC
Confidence 221 00 1234566678888889999888743
No 69
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=52.79 E-value=1.5e+02 Score=30.50 Aligned_cols=78 Identities=10% Similarity=0.165 Sum_probs=46.6
Q ss_pred CCeEEEEEeCCCcCCCCCCchHHHHHHHHHHc--cCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHH
Q 006976 353 EEISMIIAAGPFTTTDNLYFEPLKELISYAKR--KQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVE 430 (623)
Q Consensus 353 ~~l~I~vAsGPft~~d~l~~epL~~ll~~~~~--~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~ 430 (623)
.++++++.+..-.. .. .-.+.++++.+ .+||.+|++|.+++..... + ....+.+++ .+ ..+.
T Consensus 3 ~~~~f~v~gD~~~~-~~----~~~~~~~~l~~~~~~~d~vl~~GDl~~~~~~~--~---~~~~~~~~~--~~---~~~~- 66 (294)
T cd00839 3 TPFKFAVFGDMGQN-TN----NSTNTLDHLEKELGNYDAILHVGDLAYADGYN--N---GSRWDTFMR--QI---EPLA- 66 (294)
T ss_pred CcEEEEEEEECCCC-CC----CcHHHHHHHHhccCCccEEEEcCchhhhcCCc--c---chhHHHHHH--HH---HHHH-
Confidence 46778888764321 11 12455555555 7999999999998654311 0 122344333 22 3332
Q ss_pred hcCCceEEEEecCCCCCCC
Q 006976 431 YMGSEVRAILVPSIRDANH 449 (623)
Q Consensus 431 ~~~~~~~VvlVPS~rD~~~ 449 (623)
..+.++.+|+.+|...
T Consensus 67 ---~~~P~~~~~GNHD~~~ 82 (294)
T cd00839 67 ---SYVPYMVTPGNHEADY 82 (294)
T ss_pred ---hcCCcEEcCccccccc
Confidence 3567999999999864
No 70
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=52.31 E-value=43 Score=35.35 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=31.1
Q ss_pred CCCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 362 GPFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 362 GPft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
=||+.+..+|++.|..+++++.+...|-++++|
T Consensus 15 TPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~G 47 (296)
T TIGR03249 15 TPFDADGSFDEAAYRENIEWLLGYGLEALFAAG 47 (296)
T ss_pred CCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECC
Confidence 399988899999999999999999999999999
No 71
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=52.22 E-value=44 Score=34.85 Aligned_cols=35 Identities=23% Similarity=0.488 Sum_probs=31.2
Q ss_pred eCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeCc
Q 006976 361 AGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGP 395 (623)
Q Consensus 361 sGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~GP 395 (623)
-=||+.+..+|++.+.++++++.+...|.|+++|-
T Consensus 9 ~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~Gs 43 (284)
T cd00950 9 VTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGT 43 (284)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 34899899999999999999999999999999983
No 72
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=51.33 E-value=30 Score=35.24 Aligned_cols=59 Identities=22% Similarity=0.255 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCCC
Q 006976 373 EPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANH 449 (623)
Q Consensus 373 epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~~ 449 (623)
+-|+.+.+.+.+.+||.||++|.+.+...+ + .++.++ .++++.+ ...+++|++++|...
T Consensus 45 ~~l~rl~~li~~~~~d~vIi~GDl~h~~~~----~---~~~~~~---------~~~l~~~--~~~v~~V~GNHD~~~ 103 (225)
T TIGR00024 45 EIIERALSIADKYGIEALIINGDLKHEFKK----G---LEWRFI---------REFIEVT--FRDLILIRGNHDALI 103 (225)
T ss_pred HHHHHHHHHHhhcCCCEEEEcCccccccCC----h---HHHHHH---------HHHHHhc--CCcEEEECCCCCCcc
Confidence 346666677778899999999987654332 1 223222 1222222 347999999999753
No 73
>PLN02533 probable purple acid phosphatase
Probab=51.21 E-value=54 Score=36.69 Aligned_cols=75 Identities=12% Similarity=0.123 Sum_probs=46.3
Q ss_pred CCeEEEEEeCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhc
Q 006976 353 EEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYM 432 (623)
Q Consensus 353 ~~l~I~vAsGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~ 432 (623)
.++++++.+..=++ .+ ...+++.+++.+||++|+.|.+++.++. ....+++++ .+ ..+.
T Consensus 138 ~~~~f~v~GDlG~~----~~--~~~tl~~i~~~~pD~vl~~GDl~y~~~~-------~~~wd~f~~--~i---~~l~--- 196 (427)
T PLN02533 138 FPIKFAVSGDLGTS----EW--TKSTLEHVSKWDYDVFILPGDLSYANFY-------QPLWDTFGR--LV---QPLA--- 196 (427)
T ss_pred CCeEEEEEEeCCCC----cc--cHHHHHHHHhcCCCEEEEcCccccccch-------HHHHHHHHH--Hh---hhHh---
Confidence 46777777653111 11 2357777888899999999999886431 112233222 22 3332
Q ss_pred CCceEEEEecCCCCCCC
Q 006976 433 GSEVRAILVPSIRDANH 449 (623)
Q Consensus 433 ~~~~~VvlVPS~rD~~~ 449 (623)
..+-+..+|+.+|.-.
T Consensus 197 -s~~P~m~~~GNHE~~~ 212 (427)
T PLN02533 197 -SQRPWMVTHGNHELEK 212 (427)
T ss_pred -hcCceEEeCccccccc
Confidence 3567999999999853
No 74
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=50.58 E-value=51 Score=34.58 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=30.4
Q ss_pred CCcCCCCCCchHHHHHHHHHHcc-CCcEEEEeC
Q 006976 363 PFTTTDNLYFEPLKELISYAKRK-QPQLLILLG 394 (623)
Q Consensus 363 Pft~~d~l~~epL~~ll~~~~~~-~PdvlIL~G 394 (623)
||+.+..+|++.+..+++++.+. ..+-++++|
T Consensus 11 Pf~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~G 43 (288)
T cd00954 11 PFDENGEINEDVLRAIVDYLIEKQGVDGLYVNG 43 (288)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECc
Confidence 89989999999999999999998 999999999
No 75
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=49.31 E-value=51 Score=34.79 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=30.1
Q ss_pred CCcCCCCCCchHHHHHHHHHHccC-CcEEEEeC
Q 006976 363 PFTTTDNLYFEPLKELISYAKRKQ-PQLLILLG 394 (623)
Q Consensus 363 Pft~~d~l~~epL~~ll~~~~~~~-PdvlIL~G 394 (623)
||+.+..+|++.|..+++++.+.. .|.|+++|
T Consensus 11 Pf~~dg~iD~~~~~~~i~~~i~~G~v~gi~~~G 43 (290)
T TIGR00683 11 SFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGG 43 (290)
T ss_pred CCCCCCCcCHHHHHHHHHHHHhCCCcCEEEECC
Confidence 899999999999999999998888 99999998
No 76
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=48.03 E-value=1.1e+02 Score=32.05 Aligned_cols=109 Identities=13% Similarity=0.198 Sum_probs=58.2
Q ss_pred CchHHHHHHHHHH---ccCCcEEEEeCcccCCCCccccCCCcc-ccHHHHHHHHHHHHHHHHHHhc-CCceEEEEecCCC
Q 006976 371 YFEPLKELISYAK---RKQPQLLILLGPFVDSEHPQIKKGTTD-SSFDEIFHLEILRRLQDYVEYM-GSEVRAILVPSIR 445 (623)
Q Consensus 371 ~~epL~~ll~~~~---~~~PdvlIL~GPFvD~~h~~i~~g~~~-~t~~~lF~~~il~~l~~~~~~~-~~~~~VvlVPS~r 445 (623)
+|+.+-+.++.+. ..++|+||.+|.|-...+.. +.+ .+.-.-++. +..+.++.+.. ...+.+++|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~----d~~~~~~p~k~~~--~~~f~~~~~g~~~~p~~t~fi~GNH 83 (262)
T cd00844 10 ELDKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEA----DLKCMAVPPKYRK--MGDFYKYYSGEKKAPILTIFIGGNH 83 (262)
T ss_pred cHHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcc----hhhhhccchhhhh--hhhHHHHhcCCccCCeeEEEECCCC
Confidence 4555555444332 36899999999995443211 110 000000111 11111222211 1345679999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCceEEecCCcEEEECCEEEEeech
Q 006976 446 DANHDFVLPQPPFDIQPPDIIHQITSLTNPGTFEANQIKVGCCTV 490 (623)
Q Consensus 446 D~~~~~v~PQpp~~~~~~~l~~~v~~~~NP~~~~in~v~igvts~ 490 (623)
|... . +-+-+.. . ....|+.++.+=..+.++|++|+..|.
T Consensus 84 E~~~-~-l~~l~~g-g--~v~~Ni~~Lg~~~v~~~~GlrIaGLsG 123 (262)
T cd00844 84 EASN-Y-LWELPYG-G--WVAPNIYYLGYAGVVNFGGLRIAGLSG 123 (262)
T ss_pred CCHH-H-HHhhcCC-C--eecCcEEEecCCCEEEECCeEEEEecc
Confidence 9743 2 1111111 1 124689999999999999999976654
No 77
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=47.56 E-value=32 Score=34.02 Aligned_cols=60 Identities=22% Similarity=0.220 Sum_probs=41.3
Q ss_pred CchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCC
Q 006976 371 YFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDAN 448 (623)
Q Consensus 371 ~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~ 448 (623)
.|+.|..+++.+....+|.+|++|.++|.-.. + .+ ++..+.++.. ....+++|-+.+|..
T Consensus 9 ~~~~l~~~l~~~~~~~~d~li~lGD~vdrg~~---------~-~~-----~l~~l~~~~~---~~~~~~~l~GNHe~~ 68 (225)
T cd00144 9 CLDDLLRLLEKIGFPPNDKLIFLGDYVDRGPD---------S-VE-----VIDLLLALKI---LPDNVILLRGNHEDM 68 (225)
T ss_pred CHHHHHHHHHHhCCCCCCEEEEECCEeCCCCC---------c-HH-----HHHHHHHhcC---CCCcEEEEccCchhh
Confidence 46788899988887889999999999996421 1 12 3333333211 134689999999975
No 78
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=47.45 E-value=21 Score=33.71 Aligned_cols=49 Identities=12% Similarity=0.118 Sum_probs=31.7
Q ss_pred HHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCC
Q 006976 380 SYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDAN 448 (623)
Q Consensus 380 ~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~ 448 (623)
..+...+||+||++|.+.+.... .+.+. + ... ....+.|++||+++|..
T Consensus 20 ~~~~~~~~d~li~~GDi~~~~~~-----------~~~~~--~----~~~---~~~~~~v~~v~GNHD~~ 68 (166)
T cd07404 20 NFPIAPDADILVLAGDIGYLTDA-----------PRFAP--L----LLA---LKGFEPVIYVPGNHEFY 68 (166)
T ss_pred ccCCCCCCCEEEECCCCCCCcch-----------HHHHH--H----HHh---hcCCccEEEeCCCcceE
Confidence 34556899999999999875421 11111 1 111 12467899999999986
No 79
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=47.10 E-value=85 Score=32.80 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=31.1
Q ss_pred EEEEeCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeCc
Q 006976 357 MIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGP 395 (623)
Q Consensus 357 I~vAsGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~GP 395 (623)
+...-=||+.+..+|++.|.++++++.+...|-++++|-
T Consensus 6 ~~~~~TPf~~dg~id~~~~~~~i~~l~~~Gv~gl~~~Gs 44 (289)
T PF00701_consen 6 FPALITPFNADGSIDEDALKRLIDFLIEAGVDGLVVLGS 44 (289)
T ss_dssp EEEE---BETTSSB-HHHHHHHHHHHHHTTSSEEEESST
T ss_pred eeeeeCCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 334445999999999999999999999999999999994
No 80
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=47.00 E-value=62 Score=33.89 Aligned_cols=32 Identities=22% Similarity=0.581 Sum_probs=30.2
Q ss_pred CCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 363 PFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 363 Pft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
||+.+..+|++.|..+++++.+...|-++++|
T Consensus 9 Pf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~G 40 (285)
T TIGR00674 9 PFKEDGSVDFAALEKLIDFQIENGTDAIVVVG 40 (285)
T ss_pred CcCCCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 89988999999999999999999999999988
No 81
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=45.71 E-value=60 Score=34.19 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=32.1
Q ss_pred EeCCCcCCCCCCchHHHHHHHHHHc-cCCcEEEEeC
Q 006976 360 AAGPFTTTDNLYFEPLKELISYAKR-KQPQLLILLG 394 (623)
Q Consensus 360 AsGPft~~d~l~~epL~~ll~~~~~-~~PdvlIL~G 394 (623)
.-=||+.+..+|++.|..+++++.+ ...+-++++|
T Consensus 11 ~~TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~G 46 (293)
T PRK04147 11 LLTPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGG 46 (293)
T ss_pred eECcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECC
Confidence 3459999999999999999999999 9999999999
No 82
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=44.52 E-value=72 Score=27.38 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=34.3
Q ss_pred HHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCC
Q 006976 380 SYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDAN 448 (623)
Q Consensus 380 ~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~ 448 (623)
......+|+.||++|.+++..... ..+.+.. +... ......++++++.+|+.
T Consensus 20 ~~~~~~~~~~vi~~GD~~~~~~~~---------~~~~~~~-----~~~~---~~~~~~~~~~~GNHDi~ 71 (131)
T cd00838 20 ALAAAEKPDFVLVLGDLVGDGPDP---------EEVLAAA-----LALL---LLLGIPVYVVPGNHDIL 71 (131)
T ss_pred HHhcccCCCEEEECCcccCCCCCc---------hHHHHHH-----HHHh---hcCCCCEEEeCCCceEE
Confidence 455678999999999999976532 1111110 1111 13688999999999954
No 83
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=41.81 E-value=38 Score=35.62 Aligned_cols=57 Identities=25% Similarity=0.417 Sum_probs=39.5
Q ss_pred CchHHHHHHHHHH-ccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCC
Q 006976 371 YFEPLKELISYAK-RKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDAN 448 (623)
Q Consensus 371 ~~epL~~ll~~~~-~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~ 448 (623)
.|+.|..+++.+. +.++|.||++|.+||-- | .+. ++++.|.+ + ...+++|.+.+|..
T Consensus 12 ~~~~l~~ll~~~~~~~~~D~li~lGDlVdrG-p--------~s~------~vl~~l~~----l--~~~~~~VlGNHD~~ 69 (275)
T PRK00166 12 CYDELQRLLEKIDFDPAKDTLWLVGDLVNRG-P--------DSL------EVLRFVKS----L--GDSAVTVLGNHDLH 69 (275)
T ss_pred CHHHHHHHHHhcCCCCCCCEEEEeCCccCCC-c--------CHH------HHHHHHHh----c--CCCeEEEecChhHH
Confidence 5889999999886 35789999999999953 2 111 23333332 1 23588899999974
No 84
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=41.20 E-value=1.2e+02 Score=29.26 Aligned_cols=75 Identities=19% Similarity=0.223 Sum_probs=46.4
Q ss_pred ccCccEEEEEEEEECCCCC-CCCceEEEeeccCCCCCeEEEeecCCCCccccc-CCCEEEEEeecCCCCeEEEeEeccCC
Q 006976 244 ASQRTLFAVGMICCDGDGH-LNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLF-PGQVVGIEGSNPSGHCLIASKLVDQI 321 (623)
Q Consensus 244 ~s~~~v~vvGrI~~d~egk-Ln~~sv~LE~s~~~~~G~rV~Ldls~l~~~slF-PGQIV~v~G~n~~G~~f~V~ei~~~~ 321 (623)
.....+.+-|++...+=-| .+..++-++-. .....|++....+-- .|| -||-|.++|.-..|+.|++++|+...
T Consensus 49 ~~G~rlR~GGlV~~GSv~R~~~~~~v~F~vt---D~~~~v~V~Y~GiLP-DLFREGQgVVa~G~~~~~~~f~A~~vLAKH 124 (153)
T COG2332 49 ETGQRLRLGGLVEAGSVQRDPGSLKVSFVVT---DGNKSVTVSYEGILP-DLFREGQGVVAEGQLQGGGVFEAKEVLAKH 124 (153)
T ss_pred cCCcEEEEeeeEeeceEEecCCCcEEEEEEe---cCCceEEEEEeccCc-hhhhcCCeEEEEEEecCCCEEEeeehhhcC
Confidence 3467788888887544111 22223333321 223356655443322 466 69999999999888999999999654
Q ss_pred C
Q 006976 322 P 322 (623)
Q Consensus 322 P 322 (623)
+
T Consensus 125 d 125 (153)
T COG2332 125 D 125 (153)
T ss_pred C
Confidence 4
No 85
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=41.17 E-value=2.2e+02 Score=27.73 Aligned_cols=76 Identities=14% Similarity=0.097 Sum_probs=48.2
Q ss_pred cCccEEEEEEEEECCCCCC-CCceEEEeeccCCCCCeEEEeecCCCCcccccCCCEEEEEeecCCCCeEEEeEeccCCCC
Q 006976 245 SQRTLFAVGMICCDGDGHL-NDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASKLVDQIPL 323 (623)
Q Consensus 245 s~~~v~vvGrI~~d~egkL-n~~sv~LE~s~~~~~G~rV~Ldls~l~~~slFPGQIV~v~G~n~~G~~f~V~ei~~~~Pl 323 (623)
....+.+=|+|.-.+=-+- +...+..+- +.....|++..+.+----|-.||=|.++|+-..++.|.+++|+.-.|-
T Consensus 56 ~g~~iRvgG~V~~GSv~r~~~~~~v~F~v---tD~~~~v~V~Y~GilPDlFrEG~gVVveG~~~~~g~F~A~evLAKhde 132 (159)
T PRK13150 56 VGQRLRVGGMVMPGSVRRDPDSLKVNFSL---YDAEGSVTVSYEGILPDLFREGQGVVVQGTLEKGNHVLAHEVLAKHDE 132 (159)
T ss_pred CCCEEEEeeEEeCCcEEECCCCcEEEEEE---EcCCcEEEEEEeccCCccccCCCeEEEEEEECCCCEEEEeEEEeCCCC
Confidence 4577888888885431010 011122221 112336666666655555568999999999987789999999976654
No 86
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=40.32 E-value=43 Score=34.90 Aligned_cols=57 Identities=25% Similarity=0.328 Sum_probs=39.6
Q ss_pred CchHHHHHHHHHHc-cCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCC
Q 006976 371 YFEPLKELISYAKR-KQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDAN 448 (623)
Q Consensus 371 ~~epL~~ll~~~~~-~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~ 448 (623)
.|+.|+.+++.+.- ...|.||++|.+||-- | .+. ++++.|.++ ...+++|.+++|..
T Consensus 10 ~~~~L~~LL~~i~~~~~~D~Li~lGDlVdRG-p--------~s~------evl~~l~~l------~~~v~~VlGNHD~~ 67 (257)
T cd07422 10 CYDELQRLLEKINFDPAKDRLWLVGDLVNRG-P--------DSL------ETLRFVKSL------GDSAKTVLGNHDLH 67 (257)
T ss_pred CHHHHHHHHHhcCCCCCCCEEEEecCcCCCC-c--------CHH------HHHHHHHhc------CCCeEEEcCCchHH
Confidence 58899999998874 4689999999999953 2 122 133333322 13688999999975
No 87
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=39.78 E-value=77 Score=33.77 Aligned_cols=32 Identities=13% Similarity=0.217 Sum_probs=28.7
Q ss_pred CCcCC-------CCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 363 PFTTT-------DNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 363 Pft~~-------d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
||+.+ ..+|++.|..+++++.+...|-|+++|
T Consensus 12 Pf~~~~~~~~~~g~iD~~~l~~lv~~li~~Gv~Gi~v~G 50 (309)
T cd00952 12 PSKPDASDWRATDTVDLDETARLVERLIAAGVDGILTMG 50 (309)
T ss_pred CccCCccccccCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 67754 489999999999999999999999999
No 88
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=37.30 E-value=83 Score=26.27 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=29.0
Q ss_pred CeEEEEEeCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 354 EISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 354 ~l~I~vAsGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
.++|+|+-|..-+ |++.+.+-|+++....|+.+|+.|
T Consensus 3 g~rVli~GgR~~~----D~~~i~~~Ld~~~~~~~~~~lvhG 39 (71)
T PF10686_consen 3 GMRVLITGGRDWT----DHELIWAALDKVHARHPDMVLVHG 39 (71)
T ss_pred CCEEEEEECCccc----cHHHHHHHHHHHHHhCCCEEEEEC
Confidence 4578888776332 677888888888888899999988
No 89
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=37.27 E-value=94 Score=32.14 Aligned_cols=63 Identities=17% Similarity=0.267 Sum_probs=38.2
Q ss_pred EEEEEeCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCc
Q 006976 356 SMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSE 435 (623)
Q Consensus 356 ~I~vAsGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~ 435 (623)
+|++.|..+- .+.. .....++..+||++|++|.+.+.. .+ +++.|.++ .
T Consensus 2 rIa~isDiHg-----~~~~--~~~~~l~~~~pD~Vl~~GDi~~~~-------------~~-----~~~~l~~l------~ 50 (238)
T cd07397 2 RIAIVGDVHG-----QWDL--EDIKALHLLQPDLVLFVGDFGNES-------------VQ-----LVRAISSL------P 50 (238)
T ss_pred EEEEEecCCC-----CchH--HHHHHHhccCCCEEEECCCCCcCh-------------HH-----HHHHHHhC------C
Confidence 5677765542 1222 123456678999999999997521 12 23333321 2
Q ss_pred eEEEEecCCCCCCC
Q 006976 436 VRAILVPSIRDANH 449 (623)
Q Consensus 436 ~~VvlVPS~rD~~~ 449 (623)
..+++|++++|...
T Consensus 51 ~p~~~V~GNHD~~~ 64 (238)
T cd07397 51 LPKAVILGNHDAWY 64 (238)
T ss_pred CCeEEEcCCCcccc
Confidence 35899999999764
No 90
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=35.26 E-value=3.2e+02 Score=26.70 Aligned_cols=75 Identities=15% Similarity=0.110 Sum_probs=48.8
Q ss_pred cCccEEEEEEEEECCCCCCCCc--eEEEeeccCCCCCeEEEeecCCCCcccccCCCEEEEEeecCCCCeEEEeEeccCCC
Q 006976 245 SQRTLFAVGMICCDGDGHLNDK--SVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASKLVDQIP 322 (623)
Q Consensus 245 s~~~v~vvGrI~~d~egkLn~~--sv~LE~s~~~~~G~rV~Ldls~l~~~slFPGQIV~v~G~n~~G~~f~V~ei~~~~P 322 (623)
....+.+=|+|.-.+=-+ ++. .+...- +.....|++....+--.-|-.||=|.++|+-..++.|.+++|+.-.|
T Consensus 56 ~g~~iRvgG~V~~GSi~r-~~~~l~v~F~v---tD~~~~v~V~Y~GilPDlFrEG~gVVveG~~~~~g~F~A~~vLAKhd 131 (160)
T PRK13165 56 VGQRLRVGGMVMPGSVQR-DPNSLKVSFTL---YDAGGSVTVTYEGILPDLFREGQGIVAQGVLEEGNHIEAKEVLAKHD 131 (160)
T ss_pred CCCEEEEeeEEeCCcEEE-CCCCeEEEEEE---EcCCeEEEEEEcccCCccccCCCeEEEEEEECCCCeEEEEEEEecCC
Confidence 457788888888443101 111 112221 12244677766665555566899999999998778999999997665
Q ss_pred C
Q 006976 323 L 323 (623)
Q Consensus 323 l 323 (623)
-
T Consensus 132 e 132 (160)
T PRK13165 132 E 132 (160)
T ss_pred C
Confidence 4
No 91
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer.
Probab=33.03 E-value=3.3e+02 Score=24.08 Aligned_cols=59 Identities=22% Similarity=0.224 Sum_probs=39.8
Q ss_pred ccEEEEEEEEECCCCCCCCceEEEeeccCCCCCeEEEeecCCCCcccccCCCEEEEEeecCCCCeEEEeE
Q 006976 247 RTLFAVGMICCDGDGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASK 316 (623)
Q Consensus 247 ~~v~vvGrI~~d~egkLn~~sv~LE~s~~~~~G~rV~Ldls~l~~~slFPGQIV~v~G~n~~G~~f~V~e 316 (623)
..|.++|++..-. ...+.+.+ +.|..|.+.+.. ...+.+|..|-|.|+=..+....+..
T Consensus 16 k~V~ivGkV~~~~-----~~~~~~~~----~Dg~~v~v~l~~--~~~~~~~~~vEViG~V~~~~~I~~~~ 74 (101)
T cd04479 16 KTVRIVGKVEKVD-----GDSLTLIS----SDGVNVTVELNR--PLDLPISGYVEVIGKVSPDLTIRVLS 74 (101)
T ss_pred CEEEEEEEEEEec-----CCeEEEEc----CCCCEEEEEeCC--CCCcccCCEEEEEEEECCCCeEEEEE
Confidence 6899999999532 22566664 345577777653 23678899999999976554444443
No 92
>PF10723 RepB-RCR_reg: Replication regulatory protein RepB; InterPro: IPR019661 This family of proteins regulates the replication of rolling circle replication (RCR) plasmids that have a double-strand replication origin (dso). Regulation of the replication of the RCR plasmids occurs mainly at the initiation of leading strand synthesis at the dso, such that concentration of Rep protein controls plasmid replication []. ; PDB: 2KEL_B.
Probab=31.21 E-value=57 Score=28.27 Aligned_cols=31 Identities=13% Similarity=0.234 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHcCCChhHHHHHHhhhhh
Q 006976 19 EGEVLKKCLTFCINYNLKPSDLVSSWEVYYL 49 (623)
Q Consensus 19 ~~~vl~kc~~lc~~y~l~~~dlv~~Weafs~ 49 (623)
+.++-+.+.+||..++++-.+|+++|.-=++
T Consensus 49 ~~~~K~~L~~lc~~~GlTQae~IE~LI~~~~ 79 (84)
T PF10723_consen 49 PNELKERLEELCKEQGLTQAEMIERLIKSEL 79 (84)
T ss_dssp EHHHHHHHHHHHHHS---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 3489999999999999999999999975443
No 93
>PRK07217 replication factor A; Reviewed
Probab=30.66 E-value=81 Score=33.90 Aligned_cols=48 Identities=23% Similarity=0.377 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCCCCCChHHHHHHHHHHHHHcCCChhHHHHHHhhhhhh
Q 006976 2 EEEIKAEFQKNGFNFVDEGEVLKKCLTFCINYNLKPSDLVSSWEVYYLN 50 (623)
Q Consensus 2 ~~~i~~ef~~fG~~~~~~~~vl~kc~~lc~~y~l~~~dlv~~Weafs~~ 50 (623)
.|+|.++|..+|++++ .++|-+++-.|-..|++.+++=...-..+.+.
T Consensus 8 aeei~~~~s~lgvdv~-~~~ie~~L~~Lv~ey~VP~~EA~rSv~~~~~~ 55 (311)
T PRK07217 8 AEEIHEQFSDLGVDVS-VEDVEERLDTLVTEFKVPEDEARRSVTNYYLK 55 (311)
T ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 5899999999998875 46899999999999999988766655555444
No 94
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=30.59 E-value=2e+02 Score=25.21 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=45.6
Q ss_pred EEeCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEE
Q 006976 359 IAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRA 438 (623)
Q Consensus 359 vAsGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~V 438 (623)
..|||+|.-.+.++..+.+..+.+.... +. |+ =|..- ...-..+.++..+. .+..|. .-..|
T Consensus 2 YIaGPmtG~~~~N~~~f~~~a~~L~~~G-~~-vv-nPa~~-------~~~~~~~~~~ym~~-~l~~L~-------~cD~i 63 (92)
T PF14359_consen 2 YIAGPMTGLPDYNRPAFNAAAKRLRAKG-YE-VV-NPAEL-------GIPEGLSWEEYMRI-CLAMLS-------DCDAI 63 (92)
T ss_pred eEeCCcCCCcchHHHHHHHHHHHHHHCC-CE-Ee-Cchhh-------CCCCCCCHHHHHHH-HHHHHH-------hCCEE
Confidence 4689999888888899999888887755 22 22 23322 11112457777764 555554 24478
Q ss_pred EEecCCCCC
Q 006976 439 ILVPSIRDA 447 (623)
Q Consensus 439 vlVPS~rD~ 447 (623)
++.|+..+.
T Consensus 64 ~~l~gWe~S 72 (92)
T PF14359_consen 64 YMLPGWENS 72 (92)
T ss_pred EEcCCcccC
Confidence 999988775
No 95
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=30.08 E-value=39 Score=33.94 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=31.3
Q ss_pred EEEEEeCCCcCCCCCCchHHHHHHHHHHcc-CCcEEEEeCcccCC
Q 006976 356 SMIIAAGPFTTTDNLYFEPLKELISYAKRK-QPQLLILLGPFVDS 399 (623)
Q Consensus 356 ~I~vAsGPft~~d~l~~epL~~ll~~~~~~-~PdvlIL~GPFvD~ 399 (623)
+|.|.+.-.- .|+.|.++++.+.-. ..|.||++|.+||-
T Consensus 18 ri~vigDIHG-----~~~~L~~lL~~i~~~~~~D~li~lGDlvDr 57 (218)
T PRK11439 18 HIWLVGDIHG-----CFEQLMRKLRHCRFDPWRDLLISVGDLIDR 57 (218)
T ss_pred eEEEEEcccC-----CHHHHHHHHHhcCCCcccCEEEEcCcccCC
Confidence 5777765433 588999999998754 68999999999995
No 96
>PHA01623 hypothetical protein
Probab=30.07 E-value=57 Score=26.03 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=30.9
Q ss_pred cCCCCCChHHHHHHHHHHHHHcCCChhHHHHHHhhhhhh
Q 006976 12 NGFNFVDEGEVLKKCLTFCINYNLKPSDLVSSWEVYYLN 50 (623)
Q Consensus 12 fG~~~~~~~~vl~kc~~lc~~y~l~~~dlv~~Weafs~~ 50 (623)
||+.++ +++++++-.+|..++++-.+++.+=..-++.
T Consensus 16 ~sVrld--eel~~~Ld~y~~~~g~~rSe~IreAI~~yL~ 52 (56)
T PHA01623 16 FGIYMD--KDLKTRLKVYCAKNNLQLTQAIEEAIKEYLQ 52 (56)
T ss_pred EEEEeC--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 888775 4999999999999999999998876665554
No 97
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit. PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.
Probab=29.58 E-value=3.3e+02 Score=22.93 Aligned_cols=64 Identities=25% Similarity=0.469 Sum_probs=40.5
Q ss_pred cEEEEEEEEEC---CCCCCCCceEEEeeccCCCCCeEEEe--ecCCCC--cc--cccCCCEEEEEeecC-CCCeEEEeEe
Q 006976 248 TLFAVGMICCD---GDGHLNDKSVLLQSSVEHSGGQRVRL--DLHKLG--EF--SLFPGQVVGIEGSNP-SGHCLIASKL 317 (623)
Q Consensus 248 ~v~vvGrI~~d---~egkLn~~sv~LE~s~~~~~G~rV~L--dls~l~--~~--slFPGQIV~v~G~n~-~G~~f~V~ei 317 (623)
++.++|+|..- ..|+- .+.||+ ..| ++.+ --+.+. .+ .|-+|++|.++|+-. .++.+.|.+|
T Consensus 1 ~v~i~GiI~~v~~TK~g~~---~~~leD----~~G-~~Ev~~F~~~~~~~~~~~~l~~d~~v~v~g~v~~~~~~l~~~~I 72 (79)
T cd04490 1 EVSIIGMVNDVRSTKNGHR---IVELED----TTG-RITVLLTKDKEELFEEAEDILPDEVIGVSGTVSKDGGLIFADEI 72 (79)
T ss_pred CEEEEEEEeEEEEcCCCCE---EEEEEC----CCC-EEEEEEeCchhhhhhhhhhccCCCEEEEEEEEecCCCEEEEEEe
Confidence 36788888854 23432 777774 344 3333 223334 33 577999999999953 3337889999
Q ss_pred cc
Q 006976 318 VD 319 (623)
Q Consensus 318 ~~ 319 (623)
+.
T Consensus 73 ~~ 74 (79)
T cd04490 73 FR 74 (79)
T ss_pred Ec
Confidence 83
No 98
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=28.86 E-value=1.1e+02 Score=24.32 Aligned_cols=64 Identities=17% Similarity=0.176 Sum_probs=35.1
Q ss_pred EEEEEEEEECCCCCCCCceEEEeeccCCCCCeEEEeecCC--CC-cc-cccCCCEEEEEeec---CCC-CeEEEeEe
Q 006976 249 LFAVGMICCDGDGHLNDKSVLLQSSVEHSGGQRVRLDLHK--LG-EF-SLFPGQVVGIEGSN---PSG-HCLIASKL 317 (623)
Q Consensus 249 v~vvGrI~~d~egkLn~~sv~LE~s~~~~~G~rV~Ldls~--l~-~~-slFPGQIV~v~G~n---~~G-~~f~V~ei 317 (623)
|.+.|+|..-..+.-.-..+.|++ +.| ++.+-+-. .. .. .|=+|++|.++|+- ..| -.+.+.++
T Consensus 1 V~v~G~V~~~~~~~~~~~~~~l~D----~tg-~i~~~~~~~~~~~~~~~l~~g~~v~v~G~v~~~~~~~~~l~~~~i 72 (75)
T PF01336_consen 1 VTVEGRVTSIRRSGGKIVFFTLED----GTG-SIQVVFFNEEYERFREKLKEGDIVRVRGKVKRYNGGELELIVPKI 72 (75)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEE----TTE-EEEEEEETHHHHHHHHTS-TTSEEEEEEEEEEETTSSEEEEEEEE
T ss_pred CEEEEEEEEEEcCCCCEEEEEEEE----CCc-cEEEEEccHHhhHHhhcCCCCeEEEEEEEEEEECCccEEEEECEE
Confidence 578999996621111223455553 335 56555433 22 22 45589999999983 233 34555554
No 99
>PF13567 DUF4131: Domain of unknown function (DUF4131)
Probab=28.56 E-value=2.3e+02 Score=25.83 Aligned_cols=61 Identities=15% Similarity=0.097 Sum_probs=35.7
Q ss_pred CccEEEEEEEEECCCCCCCCceEEEe------eccCCCCCeEEEeecCCCCcccccCCCEEEEEeec
Q 006976 246 QRTLFAVGMICCDGDGHLNDKSVLLQ------SSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSN 306 (623)
Q Consensus 246 ~~~v~vvGrI~~d~egkLn~~sv~LE------~s~~~~~G~rV~Ldls~l~~~slFPGQIV~v~G~n 306 (623)
..++.+.|+|....+-.-....+.++ +........++.+.+.+-....+-|||.+-++|+-
T Consensus 75 ~~~~~v~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~Gd~i~~~g~l 141 (176)
T PF13567_consen 75 GKEVTVQGTVESVPQIDGRGQRFTLRVERVLAGGNWIPVSGKILLYLPKDSQPRLQPGDRIRVRGKL 141 (176)
T ss_pred CceEEEEEEEcccccccCceEEEEEEEEEeeccccccccceeeEEEeccccccccCCCCEEEEEEEE
Confidence 67899999997654211111134443 22222223366666655444478899999999953
No 100
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=28.28 E-value=50 Score=33.12 Aligned_cols=30 Identities=30% Similarity=0.451 Sum_probs=25.3
Q ss_pred HHHHHHHHHHccCCcEEEEeCcccCCCCcc
Q 006976 374 PLKELISYAKRKQPQLLILLGPFVDSEHPQ 403 (623)
Q Consensus 374 pL~~ll~~~~~~~PdvlIL~GPFvD~~h~~ 403 (623)
.-.+|-+.+...+|+.+|++||||+-.+|.
T Consensus 183 rk~elYer~~gvki~~vivitpFihdr~p~ 212 (231)
T COG5493 183 RKKELYERAKGVKINKVIVITPFIHDRYPD 212 (231)
T ss_pred HHHHHHHHhcCCccceEEEEcccccccChH
Confidence 345777788889999999999999988873
No 101
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=27.62 E-value=2.6e+02 Score=32.24 Aligned_cols=66 Identities=9% Similarity=0.158 Sum_probs=39.5
Q ss_pred ccccCCCEEEEEeec--CCCCeEEEeEeccCCCCCCCccccCCCchhhhhhhhccccccccCCCCeEEEEEeCCCcCCCC
Q 006976 292 FSLFPGQVVGIEGSN--PSGHCLIASKLVDQIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEEISMIIAAGPFTTTDN 369 (623)
Q Consensus 292 ~slFPGQIV~v~G~n--~~G~~f~V~ei~~~~Pl~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~I~vAsGPft~~d~ 369 (623)
-..++|+|||+.|.. .+|+.+...+ |+.++. .|. ..|. +.+|--| .+.
T Consensus 354 ~~a~aGDIv~v~~l~~~~~GDTL~~~~-----~~~~~~---i~~------------------~~P~-~~~~v~p---~~~ 403 (526)
T PRK00741 354 EEAYAGDIIGLHNHGTIQIGDTFTQGE-----KLKFTG---IPN------------------FAPE-LFRRVRL---KNP 403 (526)
T ss_pred ceeCCCCEEEEECCCCCccCCCccCCC-----ccccCC---CCC------------------CCcc-EEEEEEE---CCc
Confidence 378999999999964 3677775544 111111 110 1121 2222222 456
Q ss_pred CCchHHHHHHHHHHccCC
Q 006976 370 LYFEPLKELISYAKRKQP 387 (623)
Q Consensus 370 l~~epL~~ll~~~~~~~P 387 (623)
.+++.|..-|+++.++.+
T Consensus 404 ~d~~kl~~aL~~L~eED~ 421 (526)
T PRK00741 404 LKQKQLQKGLVQLSEEGA 421 (526)
T ss_pred hhHHHHHHHHHHHhhcCC
Confidence 678999999999988776
No 102
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.35 E-value=1.2e+02 Score=29.42 Aligned_cols=46 Identities=22% Similarity=0.229 Sum_probs=30.0
Q ss_pred CcEEEcCCCCcceEEEecCCCCCCccccceEEEEcCCcccc------CC-CCceEEEEEEcCCc
Q 006976 557 PDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAK------GE-GSGTFAEIYYHGSP 613 (623)
Q Consensus 557 PDILIlPS~l~~F~k~v~~~~~~~~~~~~~~v~INPG~l~k------~~-~~Gtya~l~v~~~~ 613 (623)
-|||+.+..-+.=+-.. .|+.+||||+-+- .. ..-+|+-|.|++.+
T Consensus 108 vDILl~G~Th~f~Aye~-----------eg~ffvnPGSaTGAfn~~~t~~~~PSFvLmDiqg~~ 160 (183)
T KOG3325|consen 108 VDILLTGHTHKFEAYEH-----------EGKFFVNPGSATGAFNVSDTDIIVPSFVLMDIQGST 160 (183)
T ss_pred CcEEEeCCceeEEEEEe-----------CCcEEeCCCcccCCCcccccCCCCCceEEEEecCCE
Confidence 48899887643222222 4699999998642 22 34678888887754
No 103
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=27.26 E-value=52 Score=32.14 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=24.0
Q ss_pred CCeEEEeecCCCCcccccCCCEEEEEeecCCCCe
Q 006976 278 GGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHC 311 (623)
Q Consensus 278 ~G~rV~Ldls~l~~~slFPGQIV~v~G~n~~G~~ 311 (623)
+|.++++ ++.+ ++++-+|++|++.|.|..|+.
T Consensus 4 ~~~~~~~-l~~i-sl~i~~G~~~~l~G~nG~GKS 35 (176)
T cd03238 4 SGANVHN-LQNL-DVSIPLNVLVVVTGVSGSGKS 35 (176)
T ss_pred cceeeee-ecce-EEEEcCCCEEEEECCCCCCHH
Confidence 3555555 4443 678999999999999999843
No 104
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=26.62 E-value=1.2e+02 Score=30.60 Aligned_cols=59 Identities=22% Similarity=0.299 Sum_probs=38.8
Q ss_pred CchHHHHHHHHHHcc--------CCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEec
Q 006976 371 YFEPLKELISYAKRK--------QPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVP 442 (623)
Q Consensus 371 ~~epL~~ll~~~~~~--------~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVP 442 (623)
.|+.|..+++.+.-. ..|.||++|..||-- |. +. ++++.+.++.. .-++++|-
T Consensus 10 ~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRG-p~--------S~------~vl~~l~~l~~----~~~~~~l~ 70 (222)
T cd07413 10 HAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRG-PE--------IR------ELLEIVKSMVD----AGHALAVM 70 (222)
T ss_pred CHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCC-CC--------HH------HHHHHHHHhhc----CCCEEEEE
Confidence 477899999887532 468999999999963 21 11 23333443321 22688889
Q ss_pred CCCCCC
Q 006976 443 SIRDAN 448 (623)
Q Consensus 443 S~rD~~ 448 (623)
+++|..
T Consensus 71 GNHE~~ 76 (222)
T cd07413 71 GNHEFN 76 (222)
T ss_pred ccCcHH
Confidence 999964
No 105
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=24.00 E-value=78 Score=33.17 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=29.9
Q ss_pred CCCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 362 GPFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 362 GPft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
=||+. ..+|++.|.++++++.+...|-|+++|
T Consensus 10 TPf~~-g~iD~~~~~~li~~l~~~Gv~Gl~~~G 41 (279)
T cd00953 10 TPFTG-NKIDKEKFKKHCENLISKGIDYVFVAG 41 (279)
T ss_pred cCcCC-CCcCHHHHHHHHHHHHHcCCcEEEEcc
Confidence 38987 899999999999999999999999999
No 106
>COG2350 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.56 E-value=76 Score=28.02 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=12.9
Q ss_pred cEEEEeCcccCCCCc
Q 006976 388 QLLILLGPFVDSEHP 402 (623)
Q Consensus 388 dvlIL~GPFvD~~h~ 402 (623)
.+|+.+|||.|.+..
T Consensus 35 G~ll~sGP~~~~dg~ 49 (92)
T COG2350 35 GRLLTSGPFPDRDGG 49 (92)
T ss_pred CeEEEeCCCCCCCCC
Confidence 399999999998864
No 107
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=23.19 E-value=4.1e+02 Score=31.06 Aligned_cols=135 Identities=13% Similarity=0.036 Sum_probs=82.6
Q ss_pred cCCCCeEEEeEeccCCCCCCCccccCCCchhhhhhhhc--cccccccCCCCeEEEEEeCCCcCC--CCCCchHHHHHHHH
Q 006976 306 NPSGHCLIASKLVDQIPLPVDAVVDVHPSMKQALDQEI--HSTVVISRPEEISMIIAAGPFTTT--DNLYFEPLKELISY 381 (623)
Q Consensus 306 n~~G~~f~V~ei~~~~Pl~~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~l~I~vAsGPft~~--d~l~~epL~~ll~~ 381 (623)
+++|+.++.+.|+... ...+.+.+. .... .+. ..+.+...=+++|||-.- =++.+.-+..+|++
T Consensus 136 ~p~~rvlhltDiH~D~---~Y~~gs~a~------c~~p~ccr~---s~~~p~~~~~~Ag~wG~y~~CD~P~~lies~L~~ 203 (577)
T KOG3770|consen 136 NPTFRVLHLTDIHLDP---DYSEGSDAD------CDCPMCCRN---SDGTPSGTKVAAGPWGDYGKCDSPKRLIESALDH 203 (577)
T ss_pred CCceeEEEeeccccCc---ccccCCccc------ccCcccccc---CCCCCCCccccCCCCCCcCCCCCCHHHHHHHHHH
Confidence 6899999999998432 222101110 0000 000 112332234688987542 25668889999999
Q ss_pred HHc-cC-CcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCCCCCCCCCCCCC
Q 006976 382 AKR-KQ-PQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLPQPPFD 459 (623)
Q Consensus 382 ~~~-~~-PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~~~~v~PQpp~~ 459 (623)
+++ .+ +|.+|-+|..+.-.+ -..|-++.+. +++++.+.+.+.=+.+.|+--=|.+|++-+..||-.+++
T Consensus 204 ike~~~~iD~I~wTGD~~~H~~-------w~~t~~~~l~--~~~~l~~~~~e~FpdvpvypalGNhe~~P~N~F~~~~~~ 274 (577)
T KOG3770|consen 204 IKENHKDIDYIIWTGDNVAHDV-------WAQTEEENLS--MLSRLTSLLSEYFPDVPVYPALGNHEIHPVNLFAPGSVP 274 (577)
T ss_pred HHhcCCCCCEEEEeCCCCcccc-------hhhhHHHHHH--HHHHHHHHHHHhCCCCceeeecccCCCCcHhhcCCCCCc
Confidence 987 33 899999999876542 2344455443 345555554444468888877789999876778877777
Q ss_pred CC
Q 006976 460 IQ 461 (623)
Q Consensus 460 ~~ 461 (623)
..
T Consensus 275 ~~ 276 (577)
T KOG3770|consen 275 KR 276 (577)
T ss_pred ch
Confidence 65
No 108
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=23.16 E-value=1.3e+02 Score=33.00 Aligned_cols=93 Identities=16% Similarity=0.244 Sum_probs=57.0
Q ss_pred ccCCcEEEEeCcccCCCCcc-ccCCCcc---ccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCCCCC-CCCCCCC
Q 006976 384 RKQPQLLILLGPFVDSEHPQ-IKKGTTD---SSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDF-VLPQPPF 458 (623)
Q Consensus 384 ~~~PdvlIL~GPFvD~~h~~-i~~g~~~---~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~~~~-v~PQpp~ 458 (623)
..+.|+||.||.|-...+.. .++-.+. +.+.++|+. .. .+.. .-+--|||=+.+.+..+- -+|--.+
T Consensus 28 ~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~Y-Ys---ge~~----APVlTIFIGGNHEAsnyL~eLpyGGw 99 (456)
T KOG2863|consen 28 NTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKY-YS---GEIK----APVLTIFIGGNHEASNYLQELPYGGW 99 (456)
T ss_pred CCCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHH-hC---Cccc----CceeEEEecCchHHHHHHHhcccCce
Confidence 35999999999998876632 1111122 223333332 11 1110 234568889998887532 2443332
Q ss_pred CCCCCCCCCceEEecCCcEEEECCEEEEeech
Q 006976 459 DIQPPDIIHQITSLTNPGTFEANQIKVGCCTV 490 (623)
Q Consensus 459 ~~~~~~l~~~v~~~~NP~~~~in~v~igvts~ 490 (623)
- .+||..+.=-..+.++|++||--|.
T Consensus 100 V------ApNIyYlG~agVv~~~gvRIggiSG 125 (456)
T KOG2863|consen 100 V------APNIYYLGYAGVVNFGGVRIGGISG 125 (456)
T ss_pred e------ccceEEeeecceEEECCEEEeeccc
Confidence 1 3689999999999999999987554
No 109
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=22.41 E-value=76 Score=33.62 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=25.1
Q ss_pred CchHHHHHHHHHH-ccCCcEEEEeCcccCC
Q 006976 371 YFEPLKELISYAK-RKQPQLLILLGPFVDS 399 (623)
Q Consensus 371 ~~epL~~ll~~~~-~~~PdvlIL~GPFvD~ 399 (623)
.|+.|..|++.+. +...|.|+++|.+||-
T Consensus 12 c~daL~~LL~~i~f~~~~D~l~~lGDlVdR 41 (279)
T TIGR00668 12 CYDELQALLERVEFDPGQDTLWLTGDLVAR 41 (279)
T ss_pred CHHHHHHHHHHhCcCCCCCEEEEeCCccCC
Confidence 5889999999987 4467999999999995
No 110
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=21.63 E-value=77 Score=31.37 Aligned_cols=39 Identities=13% Similarity=0.178 Sum_probs=28.9
Q ss_pred EEEEeCCCcCCCCCCchHHHHHHHHHHc-cCCcEEEEeCcccCCC
Q 006976 357 MIIAAGPFTTTDNLYFEPLKELISYAKR-KQPQLLILLGPFVDSE 400 (623)
Q Consensus 357 I~vAsGPft~~d~l~~epL~~ll~~~~~-~~PdvlIL~GPFvD~~ 400 (623)
|++.|.-.- .|+.|..+++.+.. .++|.+|++|.++|.-
T Consensus 3 i~~isDiHg-----~~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g 42 (207)
T cd07424 3 DFVVGDIHG-----HYSLLQKALDAVGFDPARDRLISVGDLIDRG 42 (207)
T ss_pred EEEEECCCC-----CHHHHHHHHHHcCCCCCCCEEEEeCCcccCC
Confidence 566665431 46788888888764 4799999999999853
No 111
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=21.57 E-value=70 Score=28.09 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=15.5
Q ss_pred CCcccccCCCEEEEEeecCCCCe
Q 006976 289 LGEFSLFPGQVVGIEGSNPSGHC 311 (623)
Q Consensus 289 l~~~slFPGQIV~v~G~n~~G~~ 311 (623)
+.+.+|..||.|.++=+|.+|.+
T Consensus 64 v~da~L~~gQ~vliE~rn~DGtW 86 (88)
T PF14836_consen 64 VEDAGLYDGQVVLIEERNEDGTW 86 (88)
T ss_dssp TTTTT--TTEEEEEEE--TTS--
T ss_pred HHHccCcCCCEEEEEeeccCCCC
Confidence 66788999999999999999863
No 112
>PF07788 DUF1626: Protein of unknown function (DUF1626); InterPro: IPR012431 This is a family consisting of sequences from hypothetical proteins of unknown function expressed by certain species of archaea. One member (Q9YCN7 from SWISSPROT) is thought to be similar to tropomyosin [].
Probab=21.31 E-value=98 Score=26.03 Aligned_cols=29 Identities=24% Similarity=0.489 Sum_probs=23.9
Q ss_pred chHHHHHHHHHHccCCcEEEEeCcccCCC
Q 006976 372 FEPLKELISYAKRKQPQLLILLGPFVDSE 400 (623)
Q Consensus 372 ~epL~~ll~~~~~~~PdvlIL~GPFvD~~ 400 (623)
|..-.+|.+++...+++.+++.+||+|.+
T Consensus 31 f~rk~~lYek~~grk~~r~ivVtp~id~~ 59 (70)
T PF07788_consen 31 FKRKAELYEKVHGRKVDRLIVVTPYIDDR 59 (70)
T ss_pred HHHHHHHHHHHHCCCcceEEEEEeecCHH
Confidence 55666777777788999999999999965
No 113
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=21.20 E-value=2.8e+02 Score=32.05 Aligned_cols=25 Identities=12% Similarity=0.110 Sum_probs=19.7
Q ss_pred CCCCCchHHHHHHHHHHccCCcEEEE
Q 006976 367 TDNLYFEPLKELISYAKRKQPQLLIL 392 (623)
Q Consensus 367 ~d~l~~epL~~ll~~~~~~~PdvlIL 392 (623)
.+..+++.|.+-|+++.++.| +-+.
T Consensus 402 ~~~~d~~kl~~aL~~L~eED~-l~v~ 426 (527)
T TIGR00503 402 KDPLKQKQLLKGLVQLSEEGA-VQVF 426 (527)
T ss_pred CChhhHHHHHHHHHHHHhhCC-eEEE
Confidence 466789999999999998888 4443
No 114
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=21.08 E-value=2.6e+02 Score=28.93 Aligned_cols=70 Identities=20% Similarity=0.356 Sum_probs=42.2
Q ss_pred CchHHHHHHH-HHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCCC
Q 006976 371 YFEPLKELIS-YAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANH 449 (623)
Q Consensus 371 ~~epL~~ll~-~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~~ 449 (623)
+-+.+...++ .+...+|+.||++|.+ +|..=++ .....++ +..+.++++ .. .|++|++++|.--
T Consensus 47 ~~~~~~~~l~~ii~~~~p~~lIilGD~---KH~~~~~--~~~e~~~------~~~f~~~~~---~~-evi~i~GNHD~~i 111 (235)
T COG1407 47 QTDRILKRLDRIIERYGPKRLIILGDL---KHEFGKS--LRQEKEE------VREFLELLD---ER-EVIIIRGNHDNGI 111 (235)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEcCcc---ccccCcc--ccccHHH------HHHHHHHhc---cC-cEEEEeccCCCcc
Confidence 3445666666 6677999999999955 7743211 1111211 223333433 22 6999999999976
Q ss_pred CCCCCC
Q 006976 450 DFVLPQ 455 (623)
Q Consensus 450 ~~v~PQ 455 (623)
..+.|-
T Consensus 112 ~~~~~~ 117 (235)
T COG1407 112 EEILPG 117 (235)
T ss_pred cccccc
Confidence 555554
No 115
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=20.79 E-value=2.5e+02 Score=24.13 Aligned_cols=15 Identities=27% Similarity=0.187 Sum_probs=12.4
Q ss_pred ccccCCCEEEEEeec
Q 006976 292 FSLFPGQVVGIEGSN 306 (623)
Q Consensus 292 ~slFPGQIV~v~G~n 306 (623)
-+..+|+||++.|..
T Consensus 69 ~~a~aGdIv~v~gl~ 83 (94)
T cd04090 69 NEAPAGNWVLIKGID 83 (94)
T ss_pred ceeCCCCEEEEECcc
Confidence 467899999999964
No 116
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=20.62 E-value=3.4e+02 Score=31.52 Aligned_cols=66 Identities=18% Similarity=0.392 Sum_probs=48.3
Q ss_pred CCeEEEEEeCCCcC---CC----CCCchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHH
Q 006976 353 EEISMIIAAGPFTT---TD----NLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRL 425 (623)
Q Consensus 353 ~~l~I~vAsGPft~---~d----~l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l 425 (623)
.-++|+||+.+... .| +-.|.-|+++|..+.+.+.|.++|-|...-...|.= ..+.+ +++.|
T Consensus 12 ntirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr---------~~L~~--~i~lL 80 (646)
T KOG2310|consen 12 NTIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHENKPSR---------KTLHR--CLELL 80 (646)
T ss_pred cceEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEecCcccccCCccH---------HHHHH--HHHHH
Confidence 56899999987432 22 235889999999999999999999998877666641 22322 56667
Q ss_pred HHHH
Q 006976 426 QDYV 429 (623)
Q Consensus 426 ~~~~ 429 (623)
.+++
T Consensus 81 RryC 84 (646)
T KOG2310|consen 81 RRYC 84 (646)
T ss_pred HHHc
Confidence 7776
No 117
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.23 E-value=59 Score=31.99 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=18.9
Q ss_pred cccccCCCEEEEEeecCCCCeE
Q 006976 291 EFSLFPGQVVGIEGSNPSGHCL 312 (623)
Q Consensus 291 ~~slFPGQIV~v~G~n~~G~~f 312 (623)
++++.||+++++.|.|.+|..-
T Consensus 18 s~~i~~Ge~~~l~G~nGsGKST 39 (211)
T cd03298 18 DLTFAQGEITAIVGPSGSGKST 39 (211)
T ss_pred EEEEcCCCEEEEECCCCCCHHH
Confidence 4788999999999999998543
Done!