Query 006976
Match_columns 623
No_of_seqs 216 out of 328
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 13:55:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006976.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006976hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3flo_A DNA polymerase alpha su 100.0 2E-103 7E-108 855.1 34.4 380 203-613 1-429 (460)
2 3e0j_A DNA polymerase subunit 100.0 5E-26 1.7E-30 248.7 34.5 351 202-610 55-450 (476)
3 2keb_A DNA polymerase subunit 99.8 3.2E-19 1.1E-23 152.9 6.7 71 2-76 28-98 (101)
4 4e2i_2 DNA polymerase alpha su 99.7 2.8E-18 9.6E-23 142.1 2.3 69 2-74 5-73 (78)
5 3av0_A DNA double-strand break 97.3 0.011 3.7E-07 62.9 19.2 84 352-449 18-109 (386)
6 2kkn_A Uncharacterized protein 97.2 0.0023 7.7E-08 61.0 11.9 156 355-623 23-178 (178)
7 1z2w_A Vacuolar protein sortin 97.1 0.0071 2.4E-07 57.8 14.3 46 556-612 117-168 (192)
8 4fbw_A DNA repair protein RAD3 97.1 0.0047 1.6E-07 66.9 14.0 227 352-612 11-293 (417)
9 2a22_A Vacuolar protein sortin 97.1 0.019 6.6E-07 55.9 17.0 46 556-612 141-192 (215)
10 4fbk_A DNA repair and telomere 97.1 0.0051 1.8E-07 67.5 14.0 232 352-621 74-363 (472)
11 2yvt_A Hypothetical protein AQ 97.0 0.0038 1.3E-07 61.6 11.7 120 353-488 4-139 (260)
12 1s3l_A Hypothetical protein MJ 96.9 0.0074 2.5E-07 58.0 12.3 153 355-612 26-183 (190)
13 3ck2_A Conserved uncharacteriz 96.3 0.078 2.7E-06 49.6 14.8 152 354-621 6-160 (176)
14 3ib7_A ICC protein; metallopho 96.3 0.1 3.4E-06 53.0 16.8 209 353-612 24-269 (330)
15 3t1i_A Double-strand break rep 96.2 0.072 2.5E-06 57.8 15.5 51 353-403 31-88 (431)
16 1su1_A Hypothetical protein YF 95.5 0.19 6.5E-06 48.6 13.7 74 355-448 26-101 (208)
17 1ii7_A MRE11 nuclease; RAD50, 93.4 0.23 7.8E-06 51.4 9.1 62 373-448 27-88 (333)
18 1uf3_A Hypothetical protein TT 92.1 0.36 1.2E-05 45.8 8.0 73 353-448 4-76 (228)
19 2q8u_A Exonuclease, putative; 91.3 0.57 1.9E-05 48.3 9.1 105 353-478 17-134 (336)
20 2xmo_A LMO2642 protein; phosph 90.4 0.82 2.8E-05 48.7 9.5 82 352-449 37-139 (443)
21 3tho_B Exonuclease, putative; 90.1 0.62 2.1E-05 49.3 8.1 88 373-480 30-118 (379)
22 2nxf_A Putative dimetal phosph 89.2 0.45 1.5E-05 47.5 5.9 82 353-447 4-99 (322)
23 3d03_A Phosphohydrolase; glyce 83.3 3.2 0.00011 40.3 8.4 58 372-448 25-84 (274)
24 1nnw_A Hypothetical protein; s 79.9 3.9 0.00013 39.7 7.6 45 556-611 167-214 (252)
25 2kct_A Cytochrome C-type bioge 75.5 19 0.00065 30.6 9.5 75 245-321 7-85 (94)
26 1uf3_A Hypothetical protein TT 72.6 5 0.00017 37.7 5.9 48 556-623 180-227 (228)
27 1xm7_A Hypothetical protein AQ 72.1 12 0.0004 35.0 8.4 54 374-448 29-84 (195)
28 3qfm_A SAPH, putative uncharac 71.4 4.1 0.00014 40.8 5.2 69 353-448 10-78 (270)
29 2wkj_A N-acetylneuraminate lya 70.2 10 0.00036 38.7 8.0 34 361-394 20-53 (303)
30 1nnw_A Hypothetical protein; s 70.0 5.3 0.00018 38.7 5.6 70 355-448 2-76 (252)
31 3cpr_A Dihydrodipicolinate syn 68.3 12 0.00039 38.4 7.9 34 361-394 25-58 (304)
32 1f6k_A N-acetylneuraminate lya 67.3 12 0.00041 38.0 7.7 33 362-394 13-46 (293)
33 3l21_A DHDPS, dihydrodipicolin 67.2 13 0.00044 38.0 8.0 34 361-394 24-57 (304)
34 1xky_A Dihydrodipicolinate syn 67.2 11 0.00038 38.5 7.5 34 361-394 21-54 (301)
35 2r8w_A AGR_C_1641P; APC7498, d 65.6 13 0.00046 38.5 7.8 33 362-394 44-76 (332)
36 1j6q_A Cytochrome C maturation 65.5 29 0.001 31.5 9.0 75 244-322 30-107 (136)
37 2ojp_A DHDPS, dihydrodipicolin 65.3 12 0.0004 38.0 7.2 55 362-428 11-66 (292)
38 3flu_A DHDPS, dihydrodipicolin 63.5 14 0.00049 37.5 7.4 34 361-394 16-49 (297)
39 1sr3_A APO-CCME; OB fold, beta 63.4 29 0.001 31.5 8.6 75 244-323 26-103 (136)
40 2yxg_A DHDPS, dihydrodipicolin 63.4 12 0.00041 37.9 6.8 32 362-394 11-42 (289)
41 2ehh_A DHDPS, dihydrodipicolin 63.2 12 0.00042 37.9 6.9 32 362-394 11-42 (294)
42 3tak_A DHDPS, dihydrodipicolin 62.4 14 0.00049 37.4 7.2 33 362-394 11-43 (291)
43 2v9d_A YAGE; dihydrodipicolini 61.8 13 0.00045 38.8 6.9 33 362-394 41-73 (343)
44 3qze_A DHDPS, dihydrodipicolin 60.9 14 0.00048 38.0 6.9 34 361-394 32-65 (314)
45 3na8_A Putative dihydrodipicol 60.4 11 0.00039 38.7 6.1 34 361-394 33-66 (315)
46 3fkr_A L-2-keto-3-deoxyarabona 60.4 13 0.00046 38.0 6.6 33 362-394 18-50 (309)
47 4dpp_A DHDPS 2, dihydrodipicol 60.4 20 0.00069 37.7 8.0 65 361-440 68-133 (360)
48 3si9_A DHDPS, dihydrodipicolin 60.0 13 0.00044 38.3 6.4 34 361-394 31-64 (315)
49 3b4u_A Dihydrodipicolinate syn 59.3 12 0.0004 38.1 5.9 34 361-394 12-45 (294)
50 3a5f_A Dihydrodipicolinate syn 59.1 17 0.00057 36.8 7.0 32 362-394 12-43 (291)
51 3d0c_A Dihydrodipicolinate syn 58.1 13 0.00045 38.2 6.1 64 362-440 21-86 (314)
52 1o5k_A DHDPS, dihydrodipicolin 58.0 13 0.00043 38.1 5.9 33 361-394 22-54 (306)
53 3s5o_A 4-hydroxy-2-oxoglutarat 57.6 14 0.00048 37.8 6.2 33 362-394 24-56 (307)
54 3h5d_A DHDPS, dihydrodipicolin 57.2 15 0.0005 37.8 6.2 34 361-394 16-49 (311)
55 3e96_A Dihydrodipicolinate syn 55.5 16 0.00054 37.5 6.2 33 362-394 21-54 (316)
56 3qfm_A SAPH, putative uncharac 54.8 14 0.00047 36.9 5.4 48 555-612 163-219 (270)
57 3qfe_A Putative dihydrodipicol 53.3 17 0.00057 37.5 5.9 34 361-394 19-53 (318)
58 3daq_A DHDPS, dihydrodipicolin 53.0 17 0.00059 36.8 5.9 32 362-394 13-44 (292)
59 3rqz_A Metallophosphoesterase; 48.3 16 0.00054 35.5 4.6 66 354-448 3-68 (246)
60 3eb2_A Putative dihydrodipicol 48.0 13 0.00044 37.9 4.0 33 362-394 14-46 (300)
61 3m5v_A DHDPS, dihydrodipicolin 46.5 27 0.00092 35.5 6.1 64 361-440 17-82 (301)
62 3rl5_A Metallophosphoesterase 45.7 48 0.0016 33.8 7.8 105 353-488 58-179 (296)
63 2rfg_A Dihydrodipicolinate syn 42.3 22 0.00076 36.1 4.7 32 362-394 11-42 (297)
64 2k5e_A Uncharacterized protein 42.0 14 0.00047 29.8 2.4 48 4-51 20-68 (73)
65 1g5b_A Serine/threonine protei 40.8 24 0.00082 33.5 4.5 41 354-399 12-53 (221)
66 2vc6_A MOSA, dihydrodipicolina 40.0 22 0.00074 36.0 4.2 32 362-394 11-42 (292)
67 2nuw_A 2-keto-3-deoxygluconate 38.9 20 0.00068 36.3 3.7 33 362-394 9-41 (288)
68 1w3i_A EDA, 2-keto-3-deoxy glu 38.8 21 0.00071 36.2 3.8 33 362-394 9-41 (293)
69 2qjc_A Diadenosine tetraphosph 38.3 28 0.00096 34.4 4.6 40 355-399 19-59 (262)
70 1xzw_A Purple acid phosphatase 37.9 67 0.0023 33.7 7.8 79 353-449 125-205 (426)
71 3tiw_A Transitional endoplasmi 36.8 16 0.00053 35.0 2.3 41 265-306 23-63 (187)
72 3dz1_A Dihydrodipicolinate syn 36.3 23 0.0008 36.2 3.8 34 361-394 17-50 (313)
73 2cpg_A REPA protein, transcrip 33.4 49 0.0017 23.2 4.1 33 19-51 10-42 (45)
74 2k53_A A3DK08 protein; NESG, C 33.1 15 0.00051 29.9 1.3 43 5-48 19-63 (76)
75 2hmc_A AGR_L_411P, dihydrodipi 32.1 25 0.00087 36.6 3.2 33 362-394 36-68 (344)
76 2pcq_A Putative dihydrodipicol 31.9 21 0.00072 36.0 2.5 32 362-394 8-39 (283)
77 2qfp_A Purple acid phosphatase 31.6 78 0.0027 33.1 7.0 78 353-448 118-197 (424)
78 2r91_A 2-keto-3-deoxy-(6-phosp 31.4 21 0.00073 36.0 2.4 32 362-394 9-40 (286)
79 3qwz_A Transitional endoplasmi 29.7 23 0.0008 34.4 2.3 41 265-306 26-66 (211)
80 3tr5_A RF-3, peptide chain rel 29.5 1.7E+02 0.0058 32.0 9.5 104 248-388 312-424 (528)
81 3kf8_B Protein TEN1; OB fold; 28.5 3.1E+02 0.011 24.3 9.2 77 238-318 15-97 (123)
82 2dfj_A Diadenosinetetraphospha 27.6 47 0.0016 33.3 4.2 67 356-448 2-69 (280)
83 2pi2_E Replication protein A 1 23.5 3.7E+02 0.013 24.2 9.1 62 246-317 43-105 (142)
84 4gs3_A Single-stranded DNA-bin 23.0 1.5E+02 0.0052 25.6 6.0 60 246-306 11-78 (107)
85 1ute_A Protein (II purple acid 22.9 1.3E+02 0.0044 29.0 6.4 86 353-448 5-95 (313)
86 2h5e_A Peptide chain release f 22.8 1.4E+02 0.0047 32.8 7.2 64 293-387 358-424 (529)
87 4h2g_A 5'-nucleotidase; dimer, 22.3 3.3E+02 0.011 29.6 10.2 48 353-400 24-87 (546)
88 3vqt_A RF-3, peptide chain rel 21.6 1.8E+02 0.0061 32.0 7.8 104 249-388 331-443 (548)
89 3d03_A Phosphohydrolase; glyce 21.0 1.6E+02 0.0055 27.9 6.6 55 556-622 187-253 (274)
90 1g5b_A Serine/threonine protei 20.9 48 0.0016 31.4 2.6 40 556-610 178-217 (221)
91 3tgh_A Glideosome-associated p 20.8 25 0.00086 36.5 0.6 64 376-449 24-87 (342)
92 3rqz_A Metallophosphoesterase; 20.7 94 0.0032 29.8 4.8 56 556-611 142-210 (246)
No 1
>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-103 Score=855.13 Aligned_cols=380 Identities=29% Similarity=0.518 Sum_probs=332.2
Q ss_pred ccchhhhcHHHHHHHHHHHHHHHHHHHHHcCCCC--CCCCCCcccCccEEEEEEEEECC---CCCCCCceEEEeeccCCC
Q 006976 203 GCRFMYDRTEDRFNALENRIRKHANALVSSGLYE--EPTDPTVASQRTLFAVGMICCDG---DGHLNDKSVLLQSSVEHS 277 (623)
Q Consensus 203 ~~r~M~~kl~~r~~~L~~rI~~~~~~~~~~~~~~--~~~~~~~~s~~~v~vvGrI~~d~---egkLn~~sv~LE~s~~~~ 277 (623)
+||||||||.||+++||+||++|++++++|++++ +|++++.+||++|+||||||||+ |||||++|++|||||++|
T Consensus 1 ~yr~M~~kl~e~~~vLd~~I~~~~~~~~~~~~~~~~~f~~p~~~sq~~v~~vGRI~~Ds~~~egkLn~~Sl~LE~sr~~g 80 (460)
T 3flo_A 1 KFRTMRQNLQEASDVLDDQIESFTKIIQNHYKLSPNDFADPTIQSQSEIYAVGRIVPDSPTYDKFLNPESLSLETSRMGG 80 (460)
T ss_dssp --CCSCCCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGBCCTTSCCSSCEEEEEEEEESSSSCCSCCCTTSEEEECCHHHH
T ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcccCccccEEEEEEEeeCCCCCCCCcchhheEEEeccccC
Confidence 5999999999999999999999999999999988 59999999999999999999997 999999999999999999
Q ss_pred CCeEEEeecCCCCcccccCCCEEEEEeecCCCCeEEEeEeccCCCCCCCccccCCCchhhhhhhhccccccccCCCCeEE
Q 006976 278 GGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASKLVDQIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEEISM 357 (623)
Q Consensus 278 ~G~rV~Ldls~l~~~slFPGQIV~v~G~n~~G~~f~V~ei~~~~Pl~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~I 357 (623)
+|+||+|||+++++||||||||||+||+|++|++|+|+|||. +|++.++ .+..+++....+ ...+.+++|
T Consensus 81 ~G~rV~Ldls~l~~~slFPGQIVav~G~N~~G~~f~v~ei~~-~P~~~~p-----~s~~~~l~~~~~----~~~~~~l~i 150 (460)
T 3flo_A 81 VGRRVRLDLSQVNELSFFLGQIVAFKGKNANGDYFTVNSILP-LPYPNSP-----VSTSQELQEFQA----NLEGSSLKV 150 (460)
T ss_dssp TTCEEEEECTTCCCEEECTTCEEEEEEECSSSSCEEEEEECC-CCCCCCC-----EEEHHHHHHHHH----HHTSSCEEE
T ss_pred CCeEEEeecccCCceeecCCCEEEEEEEcCCCCEEEEeeecc-CCCCCCC-----CCCHHHhhhhhh----hccCCCcEE
Confidence 999999999999999999999999999999999999999994 6654433 222333332221 123579999
Q ss_pred EEEeCCCcCCCCCCchHHHHHHHHHHcc-CCcEEEEeCcccCCCCccccCCCc---------cccHHHHHHHHHHHHHHH
Q 006976 358 IIAAGPFTTTDNLYFEPLKELISYAKRK-QPQLLILLGPFVDSEHPQIKKGTT---------DSSFDEIFHLEILRRLQD 427 (623)
Q Consensus 358 ~vAsGPft~~d~l~~epL~~ll~~~~~~-~PdvlIL~GPFvD~~h~~i~~g~~---------~~t~~~lF~~~il~~l~~ 427 (623)
||||||||++|||+|+||++|++++++. +||+|||+|||||++||+|++|++ +.||+++|++.|...|
T Consensus 151 vvAsGPyT~sdnl~yepL~~Ll~~v~~~~kPdvLIL~GPFvD~~hp~i~~G~~p~~~~~~~~~~t~~~lF~~~i~~il-- 228 (460)
T 3flo_A 151 IVTCGPYFANDNFSLELLQEFIDSINNEVKPHVLIMFGPFIDITHPLIASGKLPNFPQFKTQPKTLDELFLKLFTPIL-- 228 (460)
T ss_dssp EEEESCCSCSSCCCCHHHHHHHHHCCCCCCCSEEEEESCSSBTTCHHHHHTCCCCCTTCSSCCSSHHHHHHHHTHHHH--
T ss_pred EEEeCCccCCCccChHHHHHHHHHHHhccCCCEEEEecCcccccCcccccCcccccccccccccCHHHHHHHHHHHHH--
Confidence 9999999999999999999999999985 899999999999999999999998 7899999998544333
Q ss_pred HHHhcCCceEEEEecCCCCCCC-CCCCCCCCCCCCCCCCCC-ceEEecCCcEEEECCEEEEeechHHHHhhhhhhcccCC
Q 006976 428 YVEYMGSEVRAILVPSIRDANH-DFVLPQPPFDIQPPDIIH-QITSLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCS 505 (623)
Q Consensus 428 ~~~~~~~~~~VvlVPS~rD~~~-~~v~PQpp~~~~~~~l~~-~v~~~~NP~~~~in~v~igvts~Dvl~~L~~~ei~~~~ 505 (623)
+.++++++||||||+||+++ +.+||||||+++.+++++ |++|++|||+|+|||+.||+||.|+++||+ |+.+++
T Consensus 229 --~~l~~~t~VVlVPS~rD~~~~~~v~PQPpf~~k~l~l~k~nv~~~sNPc~~~in~v~igvss~Dil~~L~--e~~~~~ 304 (460)
T 3flo_A 229 --KTISPHIQTVLIPSTKDAISNHAAYPQASLIRKALQLPKRNFKCMANPSSFQINEIYFGCSNVDTFKDLK--EVIKGG 304 (460)
T ss_dssp --TTSCTTSEEEEECCTTBTTCSCCSBSBCCCCTTTTTCCTTTEEECCBSEEEEETTEEEEECCSCHHHHCC--CEEECH
T ss_pred --HhccCCCEEEEeCCcccccCCCCCcCCCCCChhhhcCCcccEEEeCCCEEEEECCEEEEEEcHHHHHHHH--HhhcCC
Confidence 34578999999999999985 689999999998878887 999999999999999999999999999997 455432
Q ss_pred CCCCcchhHHHHHHhhhccccccccccCCCCCCcc------------------------------ccchhccccccc-CC
Q 006976 506 KDGTSNDRMEIYSLDISLMGPAFFFYPLYPPAEGI------------------------------PLDFSLAQEALT-IS 554 (623)
Q Consensus 506 ~~~~~~dr~~rl~~hi~~l~~QrsfyPl~P~~~~~------------------------------~lD~~~~~~~l~-l~ 554 (623)
. +..+||++|+++|| | +|||||||||++... +||.++++.... ++
T Consensus 305 ~-~~~~dr~~Rl~~hl--L-~Qr~~yPL~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Ldv~yl~l~e~~~~ 380 (460)
T 3flo_A 305 T-TSSRYRLDRVSEHI--L-QQRRYYPIFPGSIRTRIKPKDVSTKKETNDMESKEEKVYEHISGADLDVSYLGLTEFVGG 380 (460)
T ss_dssp H-HHHSCHHHHHHHHH--H-HHTBSCCCSSCCEEC-------------------------CCEECCBCGGGGGGGBCGGG
T ss_pred C-CccccHHHHHHHHH--h-hcCcccCcCCCcccccccccccccccccccccccccccccccCCcccceeccchhhcccC
Confidence 1 13579999999999 9 999999999998543 366666543222 28
Q ss_pred CCCcEEEcCCCCcceEEEecCCCCCCccccceEEEEcCCccccCCCC-ceEEEEEEcCCc
Q 006976 555 TIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEGS-GTFAEIYYHGSP 613 (623)
Q Consensus 555 ~~PDILIlPS~l~~F~k~v~~~~~~~~~~~~~~v~INPG~l~k~~~~-Gtya~l~v~~~~ 613 (623)
++|||||+||+|++|+|+|++ |||||||+|+|+++| ||||+|+|+++.
T Consensus 381 ~~PDilI~PS~l~~F~kvv~~-----------~v~INPG~l~k~~~g~GTya~l~i~~~~ 429 (460)
T 3flo_A 381 FSPDIMIIPSELQHFARVVQN-----------VVVINPGRFIRATGNRGSYAQITVQCPD 429 (460)
T ss_dssp CCCSEEECCCSSCCEEEEETT-----------EEEEECCCSBCTTSCBCEEEEEEECCCC
T ss_pred CCCCEEEcCCCCcCceEEeCC-----------EEEECcccccCCCCCCceeEEEEEeCCc
Confidence 999999999999999999965 999999999999997 999999999864
No 2
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=99.95 E-value=5e-26 Score=248.69 Aligned_cols=351 Identities=13% Similarity=0.122 Sum_probs=243.6
Q ss_pred CccchhhhcHHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCCCcccCccEEEEEEEEECCCCCC-----------------
Q 006976 202 PGCRFMYDRTEDRFNALENRIRKHANALVSSGLYEE-PTDPTVASQRTLFAVGMICCDGDGHL----------------- 263 (623)
Q Consensus 202 ~~~r~M~~kl~~r~~~L~~rI~~~~~~~~~~~~~~~-~~~~~~~s~~~v~vvGrI~~d~egkL----------------- 263 (623)
..|..||. .|.+.|+.++.+-+ -++|.+... ..-..+...+++||||.|+++.+-|.
T Consensus 55 ~QY~~iY~---~RL~~Lr~~l~~~a--~~kw~~~~~i~klldl~~ge~c~viGTvyk~m~lKPsIL~eis~e~~~~~~~~ 129 (476)
T 3e0j_A 55 RQYAHIYA---TRLIQMRPFLENRA--QQHWGSGVGVKKLCELQPEEKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPP 129 (476)
T ss_dssp ------CH---HHHHHHHHHHHHHH--HHHSCSCCCBCCSSSCCTTCCEEEEEEEEEEC---------------------
T ss_pred HHHHHHHH---HHHHHHHHHHHHHH--HHhcCCCccchHhhcccCCCEEEEEEEEEecccCCCcHHHHHhhhhccCCCCc
Confidence 34777777 99999999999988 456653211 13345667899999999998632110
Q ss_pred ------CCceEEEeeccCCCCCeEEEeecCCCCcccccCCCEEEEEeecCCCCeEEEeEeccCCCCCCCccccCCCchhh
Q 006976 264 ------NDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASKLVDQIPLPVDAVVDVHPSMKQ 337 (623)
Q Consensus 264 ------n~~sv~LE~s~~~~~G~rV~Ldls~l~~~slFPGQIV~v~G~n~~G~~f~V~ei~~~~Pl~~~~~~~~p~~~~~ 337 (623)
.+..++||+ .+| ||+|.. .+....|.+|.||||+|+...++.|.|.+|+++-..+ . .+..
T Consensus 130 ~~~y~~~~D~l~LED----esG-Rv~L~g-~~~~~~lVTG~VvaV~G~~~~~G~F~V~di~~Pd~pp--q---~~~~--- 195 (476)
T 3e0j_A 130 RSKYIHPDDELVLED----ELQ-RIKLKG-TIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAP--Q---KPAP--- 195 (476)
T ss_dssp -CCCCCSSCEEEEEC----SSC-EEEEEE-SCCTTTCCTTCEEEEEEEECTTSSEEEEEEEECBCCC--C---CCCC---
T ss_pred cccccCCCceEEEEC----CCC-EEEEEE-EcccccccCCcEEEEEEEEcCCCeEEEEEEEcCCCCC--C---CCCC---
Confidence 235789994 456 999998 5677889999999999997666789999999732211 1 1110
Q ss_pred hhhhhccccccccCCCCeEEEEEeCCCcCCCCC-CchHHHHHHHHHHc-----------cCCcEEEEeCcccCCCCccc-
Q 006976 338 ALDQEIHSTVVISRPEEISMIIAAGPFTTTDNL-YFEPLKELISYAKR-----------KQPQLLILLGPFVDSEHPQI- 404 (623)
Q Consensus 338 ~~~~~~~~~~~~~~~~~l~I~vAsGPft~~d~l-~~epL~~ll~~~~~-----------~~PdvlIL~GPFvD~~h~~i- 404 (623)
....+..|++.||-.-.+++. ....|+-|++|+.. .+...||++|..||.....-
T Consensus 196 ------------~~~~~~~ialVSGL~igs~~~~~~~~~~ll~d~L~G~~g~~~~~~~as~I~rlIIAGn~v~~~~~~~e 263 (476)
T 3e0j_A 196 ------------PLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRD 263 (476)
T ss_dssp ------------CCSSCCEEEEECCCCBTSSCHHHHHHHHHHHHHHHTCSSCHHHHHHHTTEEEEEEESCSBCC------
T ss_pred ------------cCCCCCEEEEECCcccCCCcccchHHHHHHHHHHcCCCCCccccchhhceeEEEEECCccccccccch
Confidence 012456899999998877643 25577777777753 46899999999999863210
Q ss_pred -cCCCc---cccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCCCCCCCCCCCCCCCCCC---CCCceEEecCCcE
Q 006976 405 -KKGTT---DSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLPQPPFDIQPPD---IIHQITSLTNPGT 477 (623)
Q Consensus 405 -~~g~~---~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~~~~v~PQpp~~~~~~~---l~~~v~~~~NP~~ 477 (623)
...+. .....+.. +-++.+.+++..+.+++.|+|+|+..|+.. .++|||||++..+. .-+++++++||++
T Consensus 264 ~~~~~~y~~~~~~~~~~--~~~~~ld~~L~~l~~~i~V~lmPG~~DP~~-~~lPQqplh~~lfp~s~~~~~~~~vtNP~~ 340 (476)
T 3e0j_A 264 SINKAKYLTKKTQAASV--EAVKMLDEILLQLSASVPVDVMPGEFDPTN-YTLPQQPLHPCMFPLATAYSTLQLVTNPYQ 340 (476)
T ss_dssp -------CHHHHHHHHH--HHHHHHHHHHHHHHTTSCEEEECCTTSSSC-SSSSCCCCCTTSCHHHHTSTTEEECCSSEE
T ss_pred hhhhhhccccccchhhH--HHHHHHHHHHHhcccCceEEecCCCCCccc-ccCCCCCcCHHHhhhhhhcCccEEeCCCeE
Confidence 00000 00111122 235677777777778999999999999995 89999999998761 1258999999999
Q ss_pred EEECCEEEEeechHHHHhhhhhhcccCCCCCCcchhHHHHHHhhhccccccccccCCCCCCcc-ccchhcccccccCCCC
Q 006976 478 FEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRMEIYSLDISLMGPAFFFYPLYPPAEGI-PLDFSLAQEALTISTI 556 (623)
Q Consensus 478 ~~in~v~igvts~Dvl~~L~~~ei~~~~~~~~~~dr~~rl~~hi~~l~~QrsfyPl~P~~~~~-~lD~~~~~~~l~l~~~ 556 (623)
|+|+|+.|.++|...+.+|.+.- + ..++++ +++.+ | .+||++|.+|..... |+. -.+.+.|+..
T Consensus 341 ~~i~G~~~LgtsGqnidDi~ky~----~----~~~~l~-~me~~--L-kwrHlAPTaPdTl~~yP~~---~~DpfVi~~~ 405 (476)
T 3e0j_A 341 ATIDGVRFLGTSGQNVSDIFRYS----S----MEDHLE-ILEWT--L-RVRHISPTAPDTLGCYPFY---KTDPFIFPEC 405 (476)
T ss_dssp EEETTEEEEECSSHHHHHHHHHS----C----CCCHHH-HHHHH--H-HBTCSCTTSCCC------C---CSCTTSCSSC
T ss_pred EEECCEEEEEECCCCHHHHHhcC----C----CCCHHH-HHHHH--H-HHhccCCCCCCceeeccCC---CCCceeecCC
Confidence 99999999999999998887541 1 134554 88888 8 999999999986542 431 2467899999
Q ss_pred CcEEEcCCCCcceEEEecCCCCCCccccceEEEEcCCccccCCCCceEEEEEEc
Q 006976 557 PDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEGSGTFAEIYYH 610 (623)
Q Consensus 557 PDILIlPS~l~~F~k~v~~~~~~~~~~~~~~v~INPG~l~k~~~~Gtya~l~v~ 610 (623)
|||++++..-+.=.|.+.+ .+...|.+|.=-.|++. ||.+-+.+.
T Consensus 406 PhVyf~Gnq~~f~t~~~~~------~~~~~vrLv~VP~Fs~T---~~~vLvdl~ 450 (476)
T 3e0j_A 406 PHVYFCGNTPSFGSKIIRG------PEDQTVLLVTVPDFSAT---QTACLVNLR 450 (476)
T ss_dssp CSEEEEEEESSCEEEEEEC------SSCCEEEEEEEECHHHH---CEEEEEETT
T ss_pred CcEEEeCCCCccceeEEec------CCCCeEEEEEcCCcCCC---CeEEEEECc
Confidence 9999999987776777743 12346888887888885 676666544
No 3
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=99.77 E-value=3.2e-19 Score=152.90 Aligned_cols=71 Identities=11% Similarity=0.348 Sum_probs=64.4
Q ss_pred HHHHHHHHHHcCCCCCChHHHHHHHHHHHHHcCCChhHHHHHHhhhhhhccCCCCCCChhhHHHHHHHHHHHHHH
Q 006976 2 EEEIKAEFQKNGFNFVDEGEVLKKCLTFCINYNLKPSDLVSSWEVYYLNRQLDESTVKDDEMDGFMLHLQNEQKE 76 (623)
Q Consensus 2 ~~~i~~ef~~fG~~~~~~~~vl~kc~~lc~~y~l~~~dlv~~Weafs~~~~~~~~~l~~~nL~~F~~~l~~~~~~ 76 (623)
.++|++||++||++++| +|++||++||.+|++++++||++|+|||++. ++..||++||++||+++++++.+
T Consensus 28 ae~L~eEfdefGi~~~d--~VldKc~ELC~~y~lda~e~VeeWmAFsts~--~g~~pT~enL~~FEhEvl~kr~~ 98 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEE--ALIEKLVELCVQYGQNEEGMVGELIAFCTST--HKVGLTSEILNSFEHEFLSKRLS 98 (101)
T ss_dssp HHHHHHHHHHHTCBCCH--HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TCSBCCHHHHHHHHHHTHHHHCS
T ss_pred HHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHhh
Confidence 68999999999998865 8999999999999999999999999999974 47788999999999999987643
No 4
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=99.70 E-value=2.8e-18 Score=142.09 Aligned_cols=69 Identities=12% Similarity=0.367 Sum_probs=63.4
Q ss_pred HHHHHHHHHHcCCCCCChHHHHHHHHHHHHHcCCChhHHHHHHhhhhhhccCCCCCCChhhHHHHHHHHHHHH
Q 006976 2 EEEIKAEFQKNGFNFVDEGEVLKKCLTFCINYNLKPSDLVSSWEVYYLNRQLDESTVKDDEMDGFMLHLQNEQ 74 (623)
Q Consensus 2 ~~~i~~ef~~fG~~~~~~~~vl~kc~~lc~~y~l~~~dlv~~Weafs~~~~~~~~~l~~~nL~~F~~~l~~~~ 74 (623)
.|+|++||+.||++++| +|++||++||++|+++++|||++|+|||+|+ ++..|+++||++||+++++++
T Consensus 5 ~e~l~~el~~Fgi~c~d--~v~eKl~ElC~~y~~~~~e~V~ew~Afs~s~--~~~~lt~~~L~~fE~e~l~kr 73 (78)
T 4e2i_2 5 AQQLAEELQIFGLDCEE--ALIEKLVELCVQYGQNEEGMVGELIAFCTST--HKVGLTSEILNSFEHEFLSKR 73 (78)
T ss_dssp HHHHHHHHHHTTCCCCH--HHHHHHHTHHHHSCCCHHHHHHHHTTHHHHT--TCCCCCTTTTTGGGTTTSGGG
T ss_pred HHHHHHHHHHcCCCCcH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHHHH
Confidence 68999999999998875 8999999999999999999999999999996 577888999999999888764
No 5
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=97.29 E-value=0.011 Score=62.92 Aligned_cols=84 Identities=11% Similarity=0.267 Sum_probs=56.6
Q ss_pred CCCeEEEEEeCCCcCCCCCC--------chHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHH
Q 006976 352 PEEISMIIAAGPFTTTDNLY--------FEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILR 423 (623)
Q Consensus 352 ~~~l~I~vAsGPft~~d~l~--------~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~ 423 (623)
..+++|+..|...-...... ++.|..+++.+++.+||+||++|.++|...|.. ..+..+.+ +++
T Consensus 18 ~~~mrilhiSD~Hlg~~~~~~~~r~~~~~~~l~~~v~~~~~~~~D~VliaGDl~d~~~p~~------~~~~~~~~--~l~ 89 (386)
T 3av0_A 18 GSHMMFVHIADNHLGYRQYNLDDREKDIYDSFKLCIKKILEIKPDVVLHSGDLFNDLRPPV------KALRIAMQ--AFK 89 (386)
T ss_dssp CCCCEEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHHTTCCSEEEECSCSBSSSSCCH------HHHHHHHH--HHH
T ss_pred CCCeEEEEEccCCCCccccCcchhhHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCH------HHHHHHHH--HHH
Confidence 36789999997754322111 246888999999999999999999999765421 22222222 333
Q ss_pred HHHHHHHhcCCceEEEEecCCCCCCC
Q 006976 424 RLQDYVEYMGSEVRAILVPSIRDANH 449 (623)
Q Consensus 424 ~l~~~~~~~~~~~~VvlVPS~rD~~~ 449 (623)
+|. + .++.|++||+++|...
T Consensus 90 ~L~---~---~~~pv~~v~GNHD~~~ 109 (386)
T 3av0_A 90 KLH---E---NNIKVYIVAGNHEMPR 109 (386)
T ss_dssp HHH---H---TTCEEEECCCGGGSCS
T ss_pred HHH---h---cCCcEEEEcCCCCCCc
Confidence 332 2 3578999999999864
No 6
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}
Probab=97.23 E-value=0.0023 Score=61.03 Aligned_cols=156 Identities=17% Similarity=0.235 Sum_probs=99.0
Q ss_pred eEEEEEeCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCC
Q 006976 355 ISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGS 434 (623)
Q Consensus 355 l~I~vAsGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~ 434 (623)
++|++.|.-.-. .+++.|.++++.+. .++|.+|++|.++|. + +++.|.++
T Consensus 23 mri~~iSD~Hg~---~~~~~l~~~l~~~~-~~~D~ii~~GD~~~~---------------~-----~~~~l~~~------ 72 (178)
T 2kkn_A 23 KRFLLISDSHVP---VRMASLPDEILNSL-KEYDGVIGLGDYVDL---------------D-----TVILLEKF------ 72 (178)
T ss_dssp EEEEEECCCCBT---TTTCCCCHHHHHGG-GGCSEEEESSCBSCH---------------H-----HHHHHHHH------
T ss_pred eEEEEEecccCC---CCHHHHHHHHHHHh-cCCCEEEECCCCCCH---------------H-----HHHHHHhc------
Confidence 689999876521 13445667776655 789999999999871 1 23333332
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCceEEecCCcEEEECCEEEEeechHHHHhhhhhhcccCCCCCCcchhH
Q 006976 435 EVRAILVPSIRDANHDFVLPQPPFDIQPPDIIHQITSLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDRM 514 (623)
Q Consensus 435 ~~~VvlVPS~rD~~~~~v~PQpp~~~~~~~l~~~v~~~~NP~~~~in~v~igvts~Dvl~~L~~~ei~~~~~~~~~~dr~ 514 (623)
...+++|++..|... | .. .+ |....+.++|..|+++-.+.. ..+ .
T Consensus 73 ~~~v~~V~GNhD~~~---~-----~~---~l-------p~~~~~~~~g~~i~l~HG~~~----------------~~~-~ 117 (178)
T 2kkn_A 73 SKEFYGVHGNMDYPD---V-----KE---HL-------PFSKVLLVEGVTIGMCHGWGA----------------PWD-L 117 (178)
T ss_dssp TSSEEECCCSSSCGG---G-----GG---TS-------CSCEEEEETTEEEEECCSCCC----------------HHH-H
T ss_pred CCCEEEEECCCCcHH---H-----Hh---hC-------CcceEEEECCEEEEEECCCCC----------------CCC-H
Confidence 135999999999642 0 00 12 223457778888877654310 000 0
Q ss_pred HHHHHhhhccccccccccCCCCCCccccchhcccccccCCCCCcEEEcCCCCcceEEEecCCCCCCccccceEEEEcCCc
Q 006976 515 EIYSLDISLMGPAFFFYPLYPPAEGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGR 594 (623)
Q Consensus 515 ~rl~~hi~~l~~QrsfyPl~P~~~~~~lD~~~~~~~l~l~~~PDILIlPS~l~~F~k~v~~~~~~~~~~~~~~v~INPG~ 594 (623)
. .. + ...+. ..+|++|++..-.++++.++ ++++||||.
T Consensus 118 ---~-~~--~-----------------------~~~~~--~~~d~vi~GHtH~~~~~~~~-----------~~~~iNpGS 155 (178)
T 2kkn_A 118 ---K-DR--L-----------------------LKVFN--EKPQVILFGHTHEPEDTVKA-----------GVRFLNPGS 155 (178)
T ss_dssp ---H-HH--H-----------------------HHHSS--SCCSEEECCSCSSCCEEEET-----------TEEEECCCC
T ss_pred ---H-HH--H-----------------------HHHhc--cCCCEEEECccCCCCeEEeC-----------CEEEEECCC
Confidence 0 00 0 01111 34799999999888887764 499999999
Q ss_pred cccCCCCceEEEEEEcCCcccccceeeeC
Q 006976 595 LAKGEGSGTFAEIYYHGSPEMMNASIISI 623 (623)
Q Consensus 595 l~k~~~~Gtya~l~v~~~~~~~~a~~~~i 623 (623)
+.. ++|+.+.+... ++.++++++
T Consensus 156 ~~~----~sy~il~~~~~--~~~~~~~~l 178 (178)
T 2kkn_A 156 LAE----GSYAVLELDGG--EVRFELKTL 178 (178)
T ss_dssp TTT----TEEEEEEEETT--EEEEEEEEC
T ss_pred CCC----CeEEEEEECCC--EEEEEEEeC
Confidence 976 89999999864 567777653
No 7
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A
Probab=97.13 E-value=0.0071 Score=57.79 Aligned_cols=46 Identities=20% Similarity=0.150 Sum_probs=35.4
Q ss_pred CCcEEEcCCCCcceEEEecCCCCCCccccceEEEEcCCccccC------CCCceEEEEEEcCC
Q 006976 556 IPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKG------EGSGTFAEIYYHGS 612 (623)
Q Consensus 556 ~PDILIlPS~l~~F~k~v~~~~~~~~~~~~~~v~INPG~l~k~------~~~Gtya~l~v~~~ 612 (623)
.+|+++.++.-.++....+ ++++||||+++.. ....+|+.+.+...
T Consensus 117 ~~d~vi~GHtH~~~~~~~~-----------~~~~inpGS~~~~~~~~~~~~~~~y~il~~~~~ 168 (192)
T 1z2w_A 117 DVDILISGHTHKFEAFEHE-----------NKFYINPGSATGAYNALETNIIPSFVLMDIQAS 168 (192)
T ss_dssp SSSEEECCSSCCCEEEEET-----------TEEEEECCCTTCCCCSSCSCCCCEEEEEEEETT
T ss_pred CCCEEEECCcCcCccEeEC-----------CEEEEECCcccccCCCCCcCCCCcEEEEEEECC
Confidence 4789999988777776654 4999999999642 23579999999754
No 8
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=97.09 E-value=0.0047 Score=66.87 Aligned_cols=227 Identities=13% Similarity=0.159 Sum_probs=114.1
Q ss_pred CCCeEEEEEeCCCcCCCC-------CCchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHH
Q 006976 352 PEEISMIIAAGPFTTTDN-------LYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRR 424 (623)
Q Consensus 352 ~~~l~I~vAsGPft~~d~-------l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~ 424 (623)
...++|+.+|........ -.++.|..+++.+++.+||+||+.|.++|...|.. .+...+.+ .+++
T Consensus 11 ~~~mrilhiSDlHLg~~~~~~~~~~d~~~~l~~lv~~~~~~~~D~VliaGDLfd~~~p~~------~~~~~~~~--~lr~ 82 (417)
T 4fbw_A 11 ENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDNKPSR------KALYQALR--SLRL 82 (417)
T ss_dssp TTCEEEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHHTTCSEEEECSCCBSSSSCCH------HHHHHHHH--HHHH
T ss_pred CCCeEEEEEEcCCCCCcccccccchhHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCH------HHHHHHHH--HHHH
Confidence 467899999987553221 12467889999999999999999999999887642 22322222 2222
Q ss_pred ------------HHHHHHh---------------cCCceEEEEecCCCCCCCCCCC-------CCCCCCCCCC---CCCC
Q 006976 425 ------------LQDYVEY---------------MGSEVRAILVPSIRDANHDFVL-------PQPPFDIQPP---DIIH 467 (623)
Q Consensus 425 ------------l~~~~~~---------------~~~~~~VvlVPS~rD~~~~~v~-------PQpp~~~~~~---~l~~ 467 (623)
|.+.... ...++.|++|++.+|.....-+ +.+..- ..+ ..+.
T Consensus 83 ~~~g~~~~~~e~L~d~~~~~~~~~~~~~n~~d~~~~~gIpV~~I~GNHD~~~~~~~~s~~~lL~~~g~v-~l~g~~~~~~ 161 (417)
T 4fbw_A 83 NCLGDKPCELELLSDTSLTTGDTAVCNINYLDPNINVAIPVFSIHGNHDDPSGDGRYSALDILQVTGLV-NYFGRVPEND 161 (417)
T ss_dssp HHBSSCCCCCEECC------------CCGGGCTTBCBSSCEEECCCGGGC-----CCCHHHHHHHTTSC-EECCCCC---
T ss_pred hcccCCcccceeccchhhhcccccccccccccccccCCCeEEEEecCCCCccccccccHHHHhccCCeE-EEeCCcccCC
Confidence 2211100 0247899999999998643222 111111 000 0112
Q ss_pred ceEEecCCcEEEECCEEEEeechHHHH------hhhhhhcccCCCCCCcchhHHHHHHhhhccccccccccCCCCCCccc
Q 006976 468 QITSLTNPGTFEANQIKVGCCTVDVLK------QLSGEEMSRCSKDGTSNDRMEIYSLDISLMGPAFFFYPLYPPAEGIP 541 (623)
Q Consensus 468 ~v~~~~NP~~~~in~v~igvts~Dvl~------~L~~~ei~~~~~~~~~~dr~~rl~~hi~~l~~QrsfyPl~P~~~~~~ 541 (623)
+|.+ .|..+.-++..+++....-+. .+...-+..-.+.....+. -+|.++ +|-. .+- .+.
T Consensus 162 ~i~~--~pv~l~~g~~~valyG~~~~~d~rl~r~~~~~~v~~~~p~~~~~~~-----~nIlvl-H~~~-~~~-~~~---- 227 (417)
T 4fbw_A 162 NIVV--SPILLQKGFTKLALYGISNVRDERLYHSFRENKVKFLRPDLYRDEW-----FNLLTV-HQNH-SAH-TPT---- 227 (417)
T ss_dssp CEEE--CCEEEEETTEEEEEEEECCCCHHHHHHHHHTTCEEEEEESTTTTTS-----EEEEEE-ESCS-SCS-SSS----
T ss_pred ceeE--EeEEEEecCceEEEEeccCCchhhhhhhhhhhhhhhcCcccccCCc-----eEEEEe-cCCc-cCC-CCc----
Confidence 3333 356677666666544332211 1111111000000000000 122123 3311 111 000
Q ss_pred cchhcccccccCCCCCcEEEcCCCCcceEEEecCCCCCCccccceEEEEcCCccccCC------CCceEEEEEEcCC
Q 006976 542 LDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGE------GSGTFAEIYYHGS 612 (623)
Q Consensus 542 lD~~~~~~~l~l~~~PDILIlPS~l~~F~k~v~~~~~~~~~~~~~~v~INPG~l~k~~------~~Gtya~l~v~~~ 612 (623)
.++.. ..++.--|++++++.-.+++..... ...++.++|||+....+ +..+|+.+.+.+.
T Consensus 228 ---~yip~-~l~~~~~DyvalGH~H~~~~~~~~~-------~~~g~~i~~PGS~~~~s~~e~E~~~kg~~lvei~~~ 293 (417)
T 4fbw_A 228 ---SYLPE-SFIQDFYDFVLWGHEHECLIDGSYN-------PTQKFTVVQPGSTIATSLSPGETAPKHCGILNITGK 293 (417)
T ss_dssp ---SSCCG-GGSCTTCSEEEEESCCSCEEEEEEE-------TTTTEEEEECCCSSCSSCCHHHHSCCEEEEEEEETT
T ss_pred ---ccCch-hHhhcCCCEEEecCccccceecccc-------CCCCEEEEECCCCCcCCCccccCCCCEEEEEEEECC
Confidence 11111 1234568999999998877653210 11468999999975322 4578999999864
No 9
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7
Probab=97.07 E-value=0.019 Score=55.89 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=35.5
Q ss_pred CCcEEEcCCCCcceEEEecCCCCCCccccceEEEEcCCccccC------CCCceEEEEEEcCC
Q 006976 556 IPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKG------EGSGTFAEIYYHGS 612 (623)
Q Consensus 556 ~PDILIlPS~l~~F~k~v~~~~~~~~~~~~~~v~INPG~l~k~------~~~Gtya~l~v~~~ 612 (623)
.+|++++++.-.++....+ ++++||||.++.. ...++|+.+.+...
T Consensus 141 ~~d~vl~GHtH~~~~~~~~-----------~~~~inpGS~~~~~~~~~~~~~~~y~il~i~~~ 192 (215)
T 2a22_A 141 DCDILVTGHTHKLRVFEKN-----------GKLFLNPGTATGAFSALTPDAPPSFMLMALQGN 192 (215)
T ss_dssp TCSEEEECSSCCCEEEEET-----------TEEEEECCCSSCCCCTTSTTCCCEEEEEEEETT
T ss_pred CCCEEEECCcCCCccEeeC-----------CEEEEECCcccccCCCCCCCCCCcEEEEEEeCC
Confidence 4789999998777776654 4999999999642 23579999999754
No 10
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*
Probab=97.06 E-value=0.0051 Score=67.46 Aligned_cols=232 Identities=13% Similarity=0.167 Sum_probs=120.7
Q ss_pred CCCeEEEEEeCCCcCCCC-------CCchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHH
Q 006976 352 PEEISMIIAAGPFTTTDN-------LYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRR 424 (623)
Q Consensus 352 ~~~l~I~vAsGPft~~d~-------l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~ 424 (623)
...++|+.+|.-...... -.++.|..+++.+++.+||+||++|.++|...|.. .+...+ ++.
T Consensus 74 ~~~mrilhiSDlHLG~~~~~~~~~~d~~~~l~~lv~~~~~~~~D~VliaGDLfd~~~ps~------~a~~~~-----~~~ 142 (472)
T 4fbk_A 74 ENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDNKPSR------KALYQA-----LRS 142 (472)
T ss_dssp TTCEEEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHHTTCSEEEECSCSBSSSSCCH------HHHHHH-----HHH
T ss_pred CCCeEEEEEecccCCCcccCcccchhHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCH------HHHHHH-----HHH
Confidence 357899999887553221 12456889999999999999999999999887642 223222 222
Q ss_pred HHHH-----------HH----h---------------cCCceEEEEecCCCCCCCCCCC-------CCCCCC-C-CCCCC
Q 006976 425 LQDY-----------VE----Y---------------MGSEVRAILVPSIRDANHDFVL-------PQPPFD-I-QPPDI 465 (623)
Q Consensus 425 l~~~-----------~~----~---------------~~~~~~VvlVPS~rD~~~~~v~-------PQpp~~-~-~~~~l 465 (623)
|.++ ++ . ...++.|++|++.+|.....-+ +.+.+- . .....
T Consensus 143 Lr~~~~g~~~~~~e~L~d~~~~~~~~~~~~vn~~dp~~~~gIpVf~I~GNHD~~~~~~~~s~~~LL~~~g~v~l~g~~~~ 222 (472)
T 4fbk_A 143 LRLNCLGDKPCELELLSDTSLTTGDTAVCNINYLDPNINVAIPVFSIHGNHDDPSGDGRYSALDILQVTGLVNYFGRVPE 222 (472)
T ss_dssp HHHHHBSSCCCCCEEEEEC-----CCCSCSSSTTCTTBCBSSCEEECCCCCCSCCC--CCCHHHHHHHTTSCEECCCCSC
T ss_pred HHHhcccCCcchheecchhhhhcccccccccccccccccCCCcEEEEecCCCCccccccccHHHHhccCCcEEEeCCccc
Confidence 3331 00 0 0237899999999998753222 111111 0 00011
Q ss_pred CCceEEecCCcEEEECCEEEEeechHHHH------hhhhhhcccCCCCCCcchhHHHHHHhhhccccccccccCCCCCCc
Q 006976 466 IHQITSLTNPGTFEANQIKVGCCTVDVLK------QLSGEEMSRCSKDGTSNDRMEIYSLDISLMGPAFFFYPLYPPAEG 539 (623)
Q Consensus 466 ~~~v~~~~NP~~~~in~v~igvts~Dvl~------~L~~~ei~~~~~~~~~~dr~~rl~~hi~~l~~QrsfyPl~P~~~~ 539 (623)
+.+|.+ .|..+.-++..+++....-+. .+..+-+..-.+.....+. .+|.++ +|- ..+.-+
T Consensus 223 ~d~i~~--~pv~l~kg~~~valyGl~y~~d~rl~r~~~e~~v~~~~p~~~~~~~-----~nIlvl-H~~-~~~~~~---- 289 (472)
T 4fbk_A 223 NDNIVV--SPILLQKGFTKLALYGISNVRDERLYHSFRENKVKFLRPDLYRDEW-----FNLLTV-HQN-HSAHTP---- 289 (472)
T ss_dssp SSSEEE--CCEEEEETTEEEEEEECCCCCHHHHHHHHHTTCEEEEEESTTGGGE-----EEEEEE-ESC-SCCSST----
T ss_pred CCceeE--EEEEEEeCCceEEEEecCCCchhhhhhhhhhhhhhhhCcccccCCc-----eEEEEe-cCC-ccCCCc----
Confidence 123333 356677677666554433222 1111111100000000011 123223 332 222111
Q ss_pred cccchhcccccccCCCCCcEEEcCCCCcceEEEecCCCCCCccccceEEEEcCCcccc-----CC-CCceEEEEEEcCCc
Q 006976 540 IPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAK-----GE-GSGTFAEIYYHGSP 613 (623)
Q Consensus 540 ~~lD~~~~~~~l~l~~~PDILIlPS~l~~F~k~v~~~~~~~~~~~~~~v~INPG~l~k-----~~-~~Gtya~l~v~~~~ 613 (623)
.+ ++.. -.++.--|++++++.-.++...... ...++.++|||+... +. +..+|+.+.+.+.
T Consensus 290 --~~--yipe-~ll~~g~DyValGH~H~~~~~~~~~-------~~~g~~ivyPGS~~~~s~~e~E~~~kg~~lveI~~~- 356 (472)
T 4fbk_A 290 --TS--YLPE-SFIQDFYDFVLWGHEHECLIDGSYN-------PTQKFTVVQPGSTIATSLSPGETAPKHCGILNITGK- 356 (472)
T ss_dssp --TS--SCCG-GGSCTTCSEEEEESCCSCEEEEEEE-------TTTTEEEEECCCSSCSSCCGGGCSCCEEEEEEEETT-
T ss_pred --cc--cCCh-hhhhcCCCEEEecCcccceeeeccc-------CCCCeEEEECCCccccccCccCCCCCEEEEEEEECC-
Confidence 01 1111 1234568999999998877653210 013589999999742 22 4578999999864
Q ss_pred ccccceee
Q 006976 614 EMMNASII 621 (623)
Q Consensus 614 ~~~~a~~~ 621 (623)
.+..+.|
T Consensus 357 -~v~ve~I 363 (472)
T 4fbk_A 357 -DFHLEKI 363 (472)
T ss_dssp -EEEEEEE
T ss_pred -EEEEEEE
Confidence 3444444
No 11
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=97.03 E-value=0.0038 Score=61.60 Aligned_cols=120 Identities=15% Similarity=0.131 Sum_probs=68.4
Q ss_pred CCeEEEEEeCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeCcccCCCCcc--------cc-CCCccccHHHHH---HHH
Q 006976 353 EEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQ--------IK-KGTTDSSFDEIF---HLE 420 (623)
Q Consensus 353 ~~l~I~vAsGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~--------i~-~g~~~~t~~~lF---~~~ 420 (623)
.+++|++.|.... .++.|..+++.++..+||+||++|.++|..... .+ .... +.++++- ...
T Consensus 4 ~~mri~~iSDlH~-----~~~~~~~~l~~~~~~~~D~vi~~GDl~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~ 77 (260)
T 2yvt_A 4 MPRKVLAIKNFKE-----RFDLLPKLKGVIAEKQPDILVVVGNILKNEALEKEYERAHLARREPNR-KVIHENEHYIIET 77 (260)
T ss_dssp CCCEEEEEECCTT-----CGGGHHHHHHHHHHHCCSEEEEESCCCCCHHHHHHHHHHHHTTCCCCT-HHHHHHHHHHHHH
T ss_pred ceEEEEEEeecCC-----ChHHHHHHHHHHHhcCCCEEEECCCCCCccCcchhhhhhhhhhcccch-hhhhHHHHHHHHH
Confidence 3578999987543 456789999999889999999999999854210 00 0000 1122210 011
Q ss_pred HHHHHHHHHHhcCCceEEEEecCCCCCCCCC----CCCCCCCCCCCCCCCCceEEecCCcEEEECCEEEEee
Q 006976 421 ILRRLQDYVEYMGSEVRAILVPSIRDANHDF----VLPQPPFDIQPPDIIHQITSLTNPGTFEANQIKVGCC 488 (623)
Q Consensus 421 il~~l~~~~~~~~~~~~VvlVPS~rD~~~~~----v~PQpp~~~~~~~l~~~v~~~~NP~~~~in~v~igvt 488 (623)
+.+.+..+ .. ..+.|++||+++|..... .+... +...+++.+.+...+.++++.|...
T Consensus 78 ~~~~l~~l-~~--~~~pv~~v~GNHD~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~i~g~ 139 (260)
T 2yvt_A 78 LDKFFREI-GE--LGVKTFVVPGKNDAPLKIFLRAAYEAE-------TAYPNIRVLHEGFAGWRGEFEVIGF 139 (260)
T ss_dssp HHHHHHHH-HT--TCSEEEEECCTTSCCHHHHHHHHHHTT-------TTCTTEEECSSEEEEETTTEEEEEE
T ss_pred HHHHHHHH-Hh--cCCcEEEEcCCCCchhhhhHHHHhhhc-------cCCcceEEecCcceEEECCEEEEec
Confidence 11112222 11 257899999999975311 11110 1123567776665588888877543
No 12
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=96.92 E-value=0.0074 Score=57.96 Aligned_cols=153 Identities=11% Similarity=0.107 Sum_probs=97.9
Q ss_pred eEEEEEeCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCC
Q 006976 355 ISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGS 434 (623)
Q Consensus 355 l~I~vAsGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~ 434 (623)
++|++.|... -.++.|..+++.+++.+||++|++|.++|. + +++.|. .+
T Consensus 26 m~i~~iSD~H-----g~~~~l~~~l~~~~~~~~D~ii~~GDl~~~---------------~-----~~~~l~----~l-- 74 (190)
T 1s3l_A 26 MKIGIMSDTH-----DHLPNIRKAIEIFNDENVETVIHCGDFVSL---------------F-----VIKEFE----NL-- 74 (190)
T ss_dssp CEEEEECCCT-----TCHHHHHHHHHHHHHSCCSEEEECSCCCST---------------H-----HHHHGG----GC--
T ss_pred eEEEEEeeCC-----CCHHHHHHHHHHHhhcCCCEEEECCCCCCH---------------H-----HHHHHH----hc--
Confidence 7899998765 246789999999888999999999999762 1 122222 12
Q ss_pred ceEEEEecCCCCCCCCC----CCCCCCCCCCCCCCCCceEEecCCcEEEECCEEEEeechHHHHhhhhhhcccCCCCCCc
Q 006976 435 EVRAILVPSIRDANHDF----VLPQPPFDIQPPDIIHQITSLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTS 510 (623)
Q Consensus 435 ~~~VvlVPS~rD~~~~~----v~PQpp~~~~~~~l~~~v~~~~NP~~~~in~v~igvts~Dvl~~L~~~ei~~~~~~~~~ 510 (623)
...+++|+++.|..... .+|. +. .+ +.+.|..+.+++..|.++-....
T Consensus 75 ~~~~~~V~GNhD~~~~~~~~~~~~~--------~~-~~--l~~~~~~~~~~~~~ill~Hg~~~----------------- 126 (190)
T 1s3l_A 75 NANIIATYGNNDGERCKLKEWLKDI--------NE-EN--IIDDFISVEIDDLKFFITHGHHQ----------------- 126 (190)
T ss_dssp SSEEEEECCTTCCCHHHHHHHHHHH--------CT-TC--EEESEEEEEETTEEEEEEESCCH-----------------
T ss_pred CCCEEEEeCCCcchHHHHHHHhccc--------Ch-hh--hcccceEEeeCCcEEEEECCChH-----------------
Confidence 45799999999975310 0111 00 11 34555666666666666543211
Q ss_pred chhHHHHHHhhhccccccccccCCCCCCccccchhcccccccCCCCCcEEEcCCCCcceEEEecCCCCCCccccceEEEE
Q 006976 511 NDRMEIYSLDISLMGPAFFFYPLYPPAEGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCV 590 (623)
Q Consensus 511 ~dr~~rl~~hi~~l~~QrsfyPl~P~~~~~~lD~~~~~~~l~l~~~PDILIlPS~l~~F~k~v~~~~~~~~~~~~~~v~I 590 (623)
+ +.+.+ .+. ..+|+++.+..-.++++.++ ++++|
T Consensus 127 -~----l~~~~--------------------------~~~----~~~d~vl~GHtH~~~~~~~~-----------~~~~i 160 (190)
T 1s3l_A 127 -S----VLEMA--------------------------IKS----GLYDVVIYGHTHERVFEEVD-----------DVLVI 160 (190)
T ss_dssp -H----HHHHH--------------------------HHH----SCCSEEEEECSSCCEEEEET-----------TEEEE
T ss_pred -H----HHHHH--------------------------Hhc----CCCCEEEECCCCCcceEEEC-----------CEEEE
Confidence 0 00101 000 14788999988888877764 49999
Q ss_pred cCCcccc-CCCCceEEEEEEcCC
Q 006976 591 NPGRLAK-GEGSGTFAEIYYHGS 612 (623)
Q Consensus 591 NPG~l~k-~~~~Gtya~l~v~~~ 612 (623)
|||.+.. +...++|+.+.+...
T Consensus 161 NpGs~~~r~~~~~~y~il~~~~~ 183 (190)
T 1s3l_A 161 NPGECCGYLTGIPTIGILDTEKK 183 (190)
T ss_dssp ECCCSSCTTTSCCEEEEEETTTT
T ss_pred ECCcccccCCCCCEEEEEEcCCC
Confidence 9999876 223489999998653
No 13
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7
Probab=96.35 E-value=0.078 Score=49.64 Aligned_cols=152 Identities=11% Similarity=0.040 Sum_probs=93.7
Q ss_pred CeEEEEEeCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcC
Q 006976 354 EISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMG 433 (623)
Q Consensus 354 ~l~I~vAsGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~ 433 (623)
.++|++.|+... +++.|..+++.+.+ ++|.+|++|.+ + .+ +++.+.
T Consensus 6 ~m~i~~isD~H~-----~~~~~~~~~~~~~~-~~d~i~~~GD~-~--~~------------------~l~~l~------- 51 (176)
T 3ck2_A 6 KQTIIVMSDSHG-----DSLIVEEVRDRYVG-KVDAVFHNGDS-E--LR------------------PDSPLW------- 51 (176)
T ss_dssp CEEEEEECCCTT-----CHHHHHHHHHHHTT-TSSEEEECSCC-C--SC------------------TTCGGG-------
T ss_pred CcEEEEEecCCC-----CHHHHHHHHHHhhc-CCCEEEECCCC-c--hH------------------HHHhhh-------
Confidence 368999988662 46788889888876 99999999996 1 11 011111
Q ss_pred CceEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCceEEecCCcEEEECCEEEEeechHHHHhhhhhhcccCCCCCCcchh
Q 006976 434 SEVRAILVPSIRDANHDFVLPQPPFDIQPPDIIHQITSLTNPGTFEANQIKVGCCTVDVLKQLSGEEMSRCSKDGTSNDR 513 (623)
Q Consensus 434 ~~~~VvlVPS~rD~~~~~v~PQpp~~~~~~~l~~~v~~~~NP~~~~in~v~igvts~Dvl~~L~~~ei~~~~~~~~~~dr 513 (623)
. .+++|++.+|... .+| ....+.+++..|.++-.+... .. ...++
T Consensus 52 ~--~~~~v~GNhD~~~--~~p-------------------~~~~~~~~~~~i~~~Hg~~~~------~~------~~~~~ 96 (176)
T 3ck2_A 52 E--GIRVVKGNMDFYA--GYP-------------------ERLVTELGSTKIIQTHGHLFD------IN------FNFQK 96 (176)
T ss_dssp T--TEEECCCTTCCST--TCC-------------------SEEEEEETTEEEEEECSGGGT------TT------TCSHH
T ss_pred C--CeEEecCcccchh--cCC-------------------cEEEEEECCeEEEEECCCccC------CC------CCHHH
Confidence 1 4999999999642 122 123456677777666543210 00 00011
Q ss_pred HHHHHHhhhccccccccccCCCCCCccccchhcccccccCCCCCcEEEcCCCCcceEEEecCCCCCCccccceEEEEcCC
Q 006976 514 MEIYSLDISLMGPAFFFYPLYPPAEGIPLDFSLAQEALTISTIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPG 593 (623)
Q Consensus 514 ~~rl~~hi~~l~~QrsfyPl~P~~~~~~lD~~~~~~~l~l~~~PDILIlPS~l~~F~k~v~~~~~~~~~~~~~~v~INPG 593 (623)
+ .+.+ -...+|+++.++.-.++....+ ++++||||
T Consensus 97 l---------------------------------~~~~-~~~~~d~vi~GHtH~~~~~~~~-----------~~~~inpG 131 (176)
T 3ck2_A 97 L---------------------------------DYWA-QEEEAAICLYGHLHVPSAWLEG-----------KILFLNPG 131 (176)
T ss_dssp H---------------------------------HHHH-HHTTCSEEECCSSCCEEEEEET-----------TEEEEEEC
T ss_pred H---------------------------------HHHH-HhcCCCEEEECCcCCCCcEEEC-----------CEEEEECC
Confidence 0 0000 0124789999999888877764 49999999
Q ss_pred ccccCCC---CceEEEEEEcCCcccccceee
Q 006976 594 RLAKGEG---SGTFAEIYYHGSPEMMNASII 621 (623)
Q Consensus 594 ~l~k~~~---~Gtya~l~v~~~~~~~~a~~~ 621 (623)
.+..... .++|+.+.+... ++..+++
T Consensus 132 s~~~~~~~~~~~~y~il~~~~~--~~~v~~~ 160 (176)
T 3ck2_A 132 SISQPRGTIRECLYARVEIDDS--YFKVDFL 160 (176)
T ss_dssp CSSSCCTTCCSCCEEEEEECSS--EEEEEEE
T ss_pred CCCcCCCCCCCCeEEEEEEcCC--EEEEEEE
Confidence 9974432 279999999753 3444444
No 14
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=96.35 E-value=0.1 Score=52.97 Aligned_cols=209 Identities=8% Similarity=0.047 Sum_probs=110.7
Q ss_pred CCeEEEEEeCCCcCCCC-------CCchHHHHHHHHHHc--cCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHH
Q 006976 353 EEISMIIAAGPFTTTDN-------LYFEPLKELISYAKR--KQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILR 423 (623)
Q Consensus 353 ~~l~I~vAsGPft~~d~-------l~~epL~~ll~~~~~--~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~ 423 (623)
.+++|++.|......+. -..+.|..+++.+++ .+||.||++|.++|...+ ..++.+ .+ +++
T Consensus 24 ~~~ri~~iSD~H~~~~~~~~~~~~~~~~~l~~~l~~i~~~~~~~d~vi~~GDl~~~~~~--------~~~~~~-~~-~l~ 93 (330)
T 3ib7_A 24 PDYVLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDLADKGEP--------AAYRKL-RG-LVE 93 (330)
T ss_dssp CSEEEEEECCCCBCSSSCCBTTTBCHHHHHHHHHHHHHHHTCCCSEEEECSCCBTTCCH--------HHHHHH-HH-HHH
T ss_pred CCeEEEEEeCCccCCCCcccccccCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCH--------HHHHHH-HH-HHH
Confidence 57899999988643221 125678889998887 899999999999875432 223322 21 333
Q ss_pred HHHHHHHhcCCceEEEEecCCCCCCCC--CCCCCCCCCCCCCCCCCceEEecCCcEEEECCEEEEeechHHHHhhhhhhc
Q 006976 424 RLQDYVEYMGSEVRAILVPSIRDANHD--FVLPQPPFDIQPPDIIHQITSLTNPGTFEANQIKVGCCTVDVLKQLSGEEM 501 (623)
Q Consensus 424 ~l~~~~~~~~~~~~VvlVPS~rD~~~~--~v~PQpp~~~~~~~l~~~v~~~~NP~~~~in~v~igvts~Dvl~~L~~~ei 501 (623)
.+. +. .++.+++||+++|.... ..++..... .-+-...+.++++.|.+.......
T Consensus 94 ~l~---~~--~~~pv~~v~GNHD~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~i~lds~~~~------- 150 (330)
T 3ib7_A 94 PFA---AQ--LGAELVWVMGNHDDRAELRKFLLDEAPS-----------MAPLDRVCMIDGLRIIVLDTSVPG------- 150 (330)
T ss_dssp HHH---HH--HTCEEEECCCTTSCHHHHHHHHHCCCCC-----------CSCCCEEEEETTEEEEECCCCCTT-------
T ss_pred HHH---hh--cCCCEEEeCCCCCCHHHHHHHhcccccc-----------cCCcceEEEeCCEEEEEecCCCCC-------
Confidence 332 21 15679999999996311 011111110 112224566777766443322100
Q ss_pred ccCCCCCCcchhHHHHHHhhhccccc---------cccccCCCCCCc---cc-cchhcccccccCCCCCcEEEcCCCCcc
Q 006976 502 SRCSKDGTSNDRMEIYSLDISLMGPA---------FFFYPLYPPAEG---IP-LDFSLAQEALTISTIPDIIILPSDMKY 568 (623)
Q Consensus 502 ~~~~~~~~~~dr~~rl~~hi~~l~~Q---------rsfyPl~P~~~~---~~-lD~~~~~~~l~l~~~PDILIlPS~l~~ 568 (623)
...+....+.+..|.+.+ .+ -|-.|....... .. .+...+.+ +.-...+|+++.++.-.+
T Consensus 151 --~~~~~~~~~q~~wl~~~l----~~~~~~~~iv~~Hh~p~~~~~~~~~~~~~~~~~~l~~-~l~~~~v~~v~~GH~H~~ 223 (330)
T 3ib7_A 151 --HHHGEIRASQLGWLAEEL----ATPAPDGTILALHHPPIPSVLDMAVTVELRDQAALGR-VLRGTDVRAILAGHLHYS 223 (330)
T ss_dssp --CCSBCCCHHHHHHHHHHT----TSCCTTCEEEECSSCSSCCSSGGGGGGSBSCHHHHHH-HHTTSSEEEEEECSSSSC
T ss_pred --CCCCccCHHHHHHHHHHH----HhcccCCeEEEEECCCCCCCccccccccccCHHHHHH-HHhccCceEEEECCCCCc
Confidence 000011233444444332 11 122233221100 00 00011111 111346899999999888
Q ss_pred eEEEecCCCCCCccccceEEEEcCCccccC-------------CCCceEEEEEEcCC
Q 006976 569 FIKVLSLGGRNEGEEQKKCVCVNPGRLAKG-------------EGSGTFAEIYYHGS 612 (623)
Q Consensus 569 F~k~v~~~~~~~~~~~~~~v~INPG~l~k~-------------~~~Gtya~l~v~~~ 612 (623)
+....+ |+.++|||..+.. .+.++|+.+.+.+.
T Consensus 224 ~~~~~~-----------g~~~~~~gs~~~~~~~~~~~g~~~~~~~~~gy~iv~i~~~ 269 (330)
T 3ib7_A 224 TNATFV-----------GIPVSVASATCYTQDLTVAAGGTRGRDGAQGCNLVHVYPD 269 (330)
T ss_dssp EEEEET-----------TEEEEECCCSSCEECTTSCTTCCCEESCSCEEEEEEECSS
T ss_pred ccceEC-----------CEEEEecCcceeccCCCCCCcceeccCCCCceEEEEEECC
Confidence 877774 4889999887621 13457999999764
No 15
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=96.20 E-value=0.072 Score=57.84 Aligned_cols=51 Identities=16% Similarity=0.326 Sum_probs=39.1
Q ss_pred CCeEEEEEeCCCcCCCCC-------CchHHHHHHHHHHccCCcEEEEeCcccCCCCcc
Q 006976 353 EEISMIIAAGPFTTTDNL-------YFEPLKELISYAKRKQPQLLILLGPFVDSEHPQ 403 (623)
Q Consensus 353 ~~l~I~vAsGPft~~d~l-------~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~ 403 (623)
..++|+.+|.-......- .++.|..+++.+++.+||+||++|.++|...+.
T Consensus 31 ~~mrilhiSDlHLg~~~~~~~~~~d~~~~l~~ll~~~~~~~~D~VliaGDlfd~~~~~ 88 (431)
T 3t1i_A 31 NTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGDLFHENKPS 88 (431)
T ss_dssp GEEEEEEECCCCBTTTSSCTTTTTHHHHHHHHHHHHHHHTTCSEEEECSCCBSSSSCC
T ss_pred CCEEEEEEeccCCCCcccccchhhhHHHHHHHHHHHHhhcCCCEEEEcCccccCCCCC
Confidence 578999998875432211 135788899999999999999999999987653
No 16
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7
Probab=95.50 E-value=0.19 Score=48.61 Aligned_cols=74 Identities=14% Similarity=0.251 Sum_probs=49.8
Q ss_pred eEEEEEeCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCcccc--HHHHHHHHHHHHHHHHHHhc
Q 006976 355 ISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSS--FDEIFHLEILRRLQDYVEYM 432 (623)
Q Consensus 355 l~I~vAsGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t--~~~lF~~~il~~l~~~~~~~ 432 (623)
++|++.|... ..++.|..+++.++..+||.||++|.++|..-. .++... ..+ +++.|.+ +
T Consensus 26 mki~~iSD~H-----~~~~~l~~~l~~~~~~~~d~vi~~GDl~~~g~~----~~~~~~~~~~~-----~~~~l~~----~ 87 (208)
T 1su1_A 26 MKLMFASDIH-----GSLPATERVLELFAQSGAQWLVILGDVLNHGPR----NALPEGYAPAK-----VVERLNE----V 87 (208)
T ss_dssp CEEEEECCCT-----TBHHHHHHHHHHHHHHTCSEEEECSCCSCCCTT----SCCCTTBCHHH-----HHHHHHT----T
T ss_pred EEEEEEEcCC-----CCHHHHHHHHHHHHhcCCCEEEECCCccccCcc----cccccccCHHH-----HHHHHHh----c
Confidence 6889988754 357889999999988899999999999985221 011111 222 3333332 1
Q ss_pred CCceEEEEecCCCCCC
Q 006976 433 GSEVRAILVPSIRDAN 448 (623)
Q Consensus 433 ~~~~~VvlVPS~rD~~ 448 (623)
...+++|++++|..
T Consensus 88 --~~~v~~V~GNHD~~ 101 (208)
T 1su1_A 88 --AHKVIAVRGNCDSE 101 (208)
T ss_dssp --GGGEEECCCTTCCH
T ss_pred --CCceEEEECCCchH
Confidence 24699999999974
No 17
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=93.37 E-value=0.23 Score=51.37 Aligned_cols=62 Identities=15% Similarity=0.341 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCC
Q 006976 373 EPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDAN 448 (623)
Q Consensus 373 epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~ 448 (623)
+.|..+++.+++.+||+||++|.++|...|. ..++..+.+ ++.+|. + .++.|++|++++|..
T Consensus 27 ~~~~~~~~~~~~~~~D~vl~~GDl~d~~~~~------~~~~~~~~~--~l~~l~---~---~~~~v~~v~GNHD~~ 88 (333)
T 1ii7_A 27 EAFKNALEIAVQENVDFILIAGDLFHSSRPS------PGTLKKAIA--LLQIPK---E---HSIPVFAIEGNHDRT 88 (333)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESCSBSSSSCC------HHHHHHHHH--HHHHHH---T---TTCCEEEECCTTTCC
T ss_pred HHHHHHHHHHHhcCCCEEEECCCcCCCCCCC------HHHHHHHHH--HHHHHH---H---CCCcEEEeCCcCCCc
Confidence 5577888888899999999999999976542 122333222 333332 1 357899999999975
No 18
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=92.14 E-value=0.36 Score=45.81 Aligned_cols=73 Identities=16% Similarity=0.327 Sum_probs=50.3
Q ss_pred CCeEEEEEeCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhc
Q 006976 353 EEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYM 432 (623)
Q Consensus 353 ~~l~I~vAsGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~ 432 (623)
..++|++.|... +.++.|..+++.+++.+||+||++|.++|...+ ...+.+ +++.|.+ .
T Consensus 4 ~~mri~~iSD~H-----~~~~~~~~~~~~~~~~~~D~vi~~GDl~~~~~~-------~~~~~~-----~~~~l~~----~ 62 (228)
T 1uf3_A 4 TVRYILATSNPM-----GDLEALEKFVKLAPDTGADAIALIGNLMPKAAK-------SRDYAA-----FFRILSE----A 62 (228)
T ss_dssp CCCEEEEEECCT-----TCHHHHHHHHTHHHHHTCSEEEEESCSSCTTCC-------HHHHHH-----HHHHHGG----G
T ss_pred ceEEEEEEeecc-----CCHHHHHHHHHHHhhcCCCEEEECCCCCCCCCC-------HHHHHH-----HHHHHHh----c
Confidence 357899988654 346778899988888899999999999885421 111222 3333321 2
Q ss_pred CCceEEEEecCCCCCC
Q 006976 433 GSEVRAILVPSIRDAN 448 (623)
Q Consensus 433 ~~~~~VvlVPS~rD~~ 448 (623)
.+.+++||+++|..
T Consensus 63 --~~pv~~v~GNHD~~ 76 (228)
T 1uf3_A 63 --HLPTAYVPGPQDAP 76 (228)
T ss_dssp --CSCEEEECCTTSCS
T ss_pred --CCcEEEECCCCCch
Confidence 45699999999974
No 19
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=91.33 E-value=0.57 Score=48.27 Aligned_cols=105 Identities=14% Similarity=0.238 Sum_probs=59.9
Q ss_pred CCeEEEEEeCCCcCC---CCCC--------chHHHHHHHHHHccCCcEEEEeCc-ccCCCCccccCCCccccHHHHHHHH
Q 006976 353 EEISMIIAAGPFTTT---DNLY--------FEPLKELISYAKRKQPQLLILLGP-FVDSEHPQIKKGTTDSSFDEIFHLE 420 (623)
Q Consensus 353 ~~l~I~vAsGPft~~---d~l~--------~epL~~ll~~~~~~~PdvlIL~GP-FvD~~h~~i~~g~~~~t~~~lF~~~ 420 (623)
..++|+..|...... ..+. .+.|..+++.+++.+||+||++|. ++|...|.. .+++.+ .+
T Consensus 17 ~~mrilh~SD~HlG~~~~~~~~~~~r~~~~~~~l~~lv~~~~~~~~D~vliaGD~l~d~~~~~~------~~~~~~-~~- 88 (336)
T 2q8u_A 17 KELKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKREVDLILLTGDLLHSRNNPSV------VALHDL-LD- 88 (336)
T ss_dssp CEEEEEEEECCCBTCEECTTTCCEECHHHHHHHHHHHHHHHHHHTCSEEEEESCSBSCSSCCCH------HHHHHH-HH-
T ss_pred CceEEEEECcccCCCCccccccCcChhHHHHHHHHHHHHHHHHhCCCEEEECCccccCCCCCCH------HHHHHH-HH-
Confidence 678999999876431 1111 356888888999999999999999 998655421 122222 21
Q ss_pred HHHHHHHHHHhcCCceEEEEecCCCCCCCCCCCCCCCCCCCCC-CCCCceEEecCCcEE
Q 006976 421 ILRRLQDYVEYMGSEVRAILVPSIRDANHDFVLPQPPFDIQPP-DIIHQITSLTNPGTF 478 (623)
Q Consensus 421 il~~l~~~~~~~~~~~~VvlVPS~rD~~~~~v~PQpp~~~~~~-~l~~~v~~~~NP~~~ 478 (623)
++++|. + . +.|++||+++|... .-.. ...+ ....|++++.|+...
T Consensus 89 ~l~~L~---~---~-~pv~~i~GNHD~~~-~~~~-----~~~l~~~g~nv~v~~~~~~~ 134 (336)
T 2q8u_A 89 YLKRMM---R---T-APVVVLPGNHDWKG-LKLF-----GNFVTSISSDITFVMSFEPV 134 (336)
T ss_dssp HHHHHH---H---H-SCEEECCC-------CHHH-----HHHHHHHCSSEEECCSSSCE
T ss_pred HHHHHH---h---c-CCEEEECCCCCccc-cccH-----HHHHHhcCCEEEEEeccccc
Confidence 343343 2 1 56999999999753 1000 0011 112359999988763
No 20
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}
Probab=90.42 E-value=0.82 Score=48.72 Aligned_cols=82 Identities=18% Similarity=0.334 Sum_probs=55.5
Q ss_pred CCCeEEEEEeCCCcCCCCC---------------------CchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCcc
Q 006976 352 PEEISMIIAAGPFTTTDNL---------------------YFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTD 410 (623)
Q Consensus 352 ~~~l~I~vAsGPft~~d~l---------------------~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~ 410 (623)
..+++|++.|.+....... ..+.|..+++.+++.+||+||++|.+++...+
T Consensus 37 ~~~~~i~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~~-------- 108 (443)
T 2xmo_A 37 DRNLSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVESKKTDVLIISGDLTNNGEK-------- 108 (443)
T ss_dssp CCCEEEEEECCCCBCCGGGBCCCHHHHHHHHTSTTCCGGGHHHHHHHHHHHHHHHTCSEEEEESCCBSSCCH--------
T ss_pred CCCeEEEEEeCCCCCCccccccchhhhcccccccccccccHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCH--------
Confidence 3678999999986532211 25578888888888999999999999875321
Q ss_pred ccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCCC
Q 006976 411 SSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANH 449 (623)
Q Consensus 411 ~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~~ 449 (623)
..++.+.+ +++.+. . .++.|+.||+.+|...
T Consensus 109 ~~~~~~~~--~l~~l~---~---~~~~~~~v~GNHD~~~ 139 (443)
T 2xmo_A 109 TSHEELAK--KLTQVE---K---NGTQVFVVPGNHDINN 139 (443)
T ss_dssp HHHHHHHH--HHHHHH---H---TTCEEEEECCTTTSSC
T ss_pred HHHHHHHH--HHHHHH---h---CCCeEEEECCcCCCCC
Confidence 22333221 233332 1 3678999999999854
No 21
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=90.06 E-value=0.62 Score=49.26 Aligned_cols=88 Identities=15% Similarity=0.301 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHccCCcEEEEeCccc-CCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCCCCC
Q 006976 373 EPLKELISYAKRKQPQLLILLGPFV-DSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANHDF 451 (623)
Q Consensus 373 epL~~ll~~~~~~~PdvlIL~GPFv-D~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~~~~ 451 (623)
..|..+++.+++.+||+||++|.++ |...+.. ..++.+ .+ ++.+|.+ . +.|++|++++|.....
T Consensus 30 ~~l~~l~~~~~~~~~D~vliaGDl~hd~~~~~~------~~~~~~-~~-~l~~l~~------~-~~v~~i~GNHD~~~~~ 94 (379)
T 3tho_B 30 KALDKVVEEAEKREVDLILLTGDLLHSRNNPSV------VALHDL-LD-YLKRMMR------T-APVVVLPGNQDWKGLK 94 (379)
T ss_dssp HHHHHHHHHHHHHTCSEEEECSCCBSCSSSCCH------HHHHHH-HH-HHHHHHH------H-SCEEECCCTTSCTTHH
T ss_pred HHHHHHHHHHHhcCCCEEEECCCccccCCCCCH------HHHHHH-HH-HHHHHHh------C-CCEEEEcCCCccccCc
Confidence 4677788888889999999999999 7765431 223222 21 3444432 2 5799999999954322
Q ss_pred CCCCCCCCCCCCCCCCceEEecCCcEEEE
Q 006976 452 VLPQPPFDIQPPDIIHQITSLTNPGTFEA 480 (623)
Q Consensus 452 v~PQpp~~~~~~~l~~~v~~~~NP~~~~i 480 (623)
+++...- .++.+++++..+..+.+
T Consensus 95 ~~~~~~~-----~~~~~~~~~~~~~~v~l 118 (379)
T 3tho_B 95 LFGNFVT-----SISSDITFVMSFEPVDV 118 (379)
T ss_dssp HHHHHHH-----TTCSSEEECCSSCCEEE
T ss_pred ccccccc-----ccCCcceeecccceEEE
Confidence 2221110 23456777665444444
No 22
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=89.25 E-value=0.45 Score=47.47 Aligned_cols=82 Identities=13% Similarity=0.124 Sum_probs=52.8
Q ss_pred CCeEEEEEeCCCcCCCCC--------------CchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHH
Q 006976 353 EEISMIIAAGPFTTTDNL--------------YFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFH 418 (623)
Q Consensus 353 ~~l~I~vAsGPft~~d~l--------------~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~ 418 (623)
..++|++.|.+......- ..+.|..+++.+++.+||.||++|.+++.....- ....+.|+
T Consensus 4 ~~~~i~~isD~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GD~~~~~~~~~------~~~~~~~~ 77 (322)
T 2nxf_A 4 PVFTFGLIADVQYADIEDGENYLRTRRRYYRGSADLLRDAVLQWRRERVQCVVQLGDIIDGHNRRR------DASDRALD 77 (322)
T ss_dssp CSEEEEEECCCCBCSSCCEECTTSSSEECTTHHHHHHHHHHHHHHHTTCSEEEECSCCBCTHHHHT------TCHHHHHH
T ss_pred CceEEEEEeeccccccCcccccccchHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCccCCCCCcc------hHHHHHHH
Confidence 467899999886543211 0256778888888899999999999998532110 01122233
Q ss_pred HHHHHHHHHHHHhcCCceEEEEecCCCCC
Q 006976 419 LEILRRLQDYVEYMGSEVRAILVPSIRDA 447 (623)
Q Consensus 419 ~~il~~l~~~~~~~~~~~~VvlVPS~rD~ 447 (623)
. +++.+. . -.+.+++||+.+|.
T Consensus 78 ~-~~~~l~----~--~~~p~~~v~GNHD~ 99 (322)
T 2nxf_A 78 T-VMAELD----A--CSVDVHHVWGNHEF 99 (322)
T ss_dssp H-HHHHHH----T--TCSEEEECCCHHHH
T ss_pred H-HHHHHH----h--cCCcEEEecCCCCc
Confidence 2 333333 2 25689999999998
No 23
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=83.29 E-value=3.2 Score=40.33 Aligned_cols=58 Identities=14% Similarity=0.294 Sum_probs=39.0
Q ss_pred chHHHHHHHHHHcc--CCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCC
Q 006976 372 FEPLKELISYAKRK--QPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDAN 448 (623)
Q Consensus 372 ~epL~~ll~~~~~~--~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~ 448 (623)
++.|..+++.+++. +||++|++|.+++...+ ..++. +. ++++.+ ++.++.||+.+|..
T Consensus 25 ~~~l~~~l~~~~~~~~~~d~vi~~GDl~~~~~~--------~~~~~-----~~----~~l~~l--~~p~~~v~GNHD~~ 84 (274)
T 3d03_A 25 NAANADVVSQLNALRERPDAVVVSGDIVNCGRP--------EEYQV-----AR----QILGSL--NYPLYLIPGNHDDK 84 (274)
T ss_dssp HHHHHHHHHHHHTCSSCCSEEEEESCCBSSCCH--------HHHHH-----HH----HHHTTC--SSCEEEECCTTSCH
T ss_pred HHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCH--------HHHHH-----HH----HHHHhc--CCCEEEECCCCCCH
Confidence 46788888888875 68999999999874321 12222 22 222222 45699999999974
No 24
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A
Probab=79.91 E-value=3.9 Score=39.70 Aligned_cols=45 Identities=20% Similarity=0.128 Sum_probs=36.0
Q ss_pred CCcEEEcCCCCcceEEEecCCCCCCccccceEEEEcCCccccCC---CCceEEEEEEcC
Q 006976 556 IPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGE---GSGTFAEIYYHG 611 (623)
Q Consensus 556 ~PDILIlPS~l~~F~k~v~~~~~~~~~~~~~~v~INPG~l~k~~---~~Gtya~l~v~~ 611 (623)
.+|++|.++.-.++...++ ++++||||.+.... ..++|+.+.+.+
T Consensus 167 ~~~~vi~GHtH~~~~~~~~-----------~~~~in~Gs~~~~~~~~~~~~y~il~~~~ 214 (252)
T 1nnw_A 167 DYEMLIVASPMYPVDAMTR-----------YGRVVCPGSVGFPPGKEHKATFALVDVDT 214 (252)
T ss_dssp TSSEEEESTTCSEEEEEET-----------TEEEEEECCSSSCSSSSCCEEEEEEETTT
T ss_pred CCCEEEECCccccceEecC-----------CeEEEECCCccCCCCCCCcceEEEEECCC
Confidence 5899999999888888774 49999999987432 357999988765
No 25
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=75.49 E-value=19 Score=30.64 Aligned_cols=75 Identities=19% Similarity=0.164 Sum_probs=49.6
Q ss_pred cCccEEEEEEEEECCCCC---CCCceEEEeeccCCCCCeEEEeecCCCCcccccCCCEEEEEeecCC-CCeEEEeEeccC
Q 006976 245 SQRTLFAVGMICCDGDGH---LNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPS-GHCLIASKLVDQ 320 (623)
Q Consensus 245 s~~~v~vvGrI~~d~egk---Ln~~sv~LE~s~~~~~G~rV~Ldls~l~~~slFPGQIV~v~G~n~~-G~~f~V~ei~~~ 320 (623)
....+.+-|+|.-.+=-+ -..-+..|.+ ....+..|++....+.---|=.||=|.++|+... ++.|.+++|+.-
T Consensus 7 ~~~~iRvgG~V~~GSv~r~~~~~~v~F~vtD--~~~~~~~v~V~Y~GilPDlFrEGqgVV~~G~l~~~~g~F~A~evLaK 84 (94)
T 2kct_A 7 KLHTVRLFGTVAADGLTMLDGAPGVRFRLED--KDNTSKTVWVLYKGAVPDTFKPGVEVIIEGGLAPGEDTFKARTLMTK 84 (94)
T ss_dssp TTCCEEEEEEECSTTCEECTTSSEEEEEEEC--SSCTTCEEEEEEESCCCTTCCTTCEEEEEEEECTTCSEEEEEEEEES
T ss_pred CCCeEEEeeEEeCCeEEecCCCCEEEEEEEc--CCCCCcEEEEEECCCCCccccCCCeEEEEEEEeCCCCEEEEeEEEEe
Confidence 456799999998543101 1122344432 1123568888877765555558999999999875 679999999954
Q ss_pred C
Q 006976 321 I 321 (623)
Q Consensus 321 ~ 321 (623)
.
T Consensus 85 h 85 (94)
T 2kct_A 85 C 85 (94)
T ss_dssp S
T ss_pred C
Confidence 4
No 26
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=72.58 E-value=5 Score=37.70 Aligned_cols=48 Identities=15% Similarity=0.231 Sum_probs=35.8
Q ss_pred CCcEEEcCCCCcceEEEecCCCCCCccccceEEEEcCCccccCCCCceEEEEEEcCCcccccceeeeC
Q 006976 556 IPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEGSGTFAEIYYHGSPEMMNASIISI 623 (623)
Q Consensus 556 ~PDILIlPS~l~~F~k~v~~~~~~~~~~~~~~v~INPG~l~k~~~~Gtya~l~v~~~~~~~~a~~~~i 623 (623)
.||+++.++.- +....+ .++++||||.+. .|+|+.+.+.+ ...+++++
T Consensus 180 ~~~~~~~GH~H-~~~~~~-----------~~~~~in~Gs~~----~~~~~i~~~~~----~~~~~~~v 227 (228)
T 1uf3_A 180 NPLLVLVAGKG-QKHEML-----------GASWVVVPGDLS----EGEYSLLDLRA----RKLETGNV 227 (228)
T ss_dssp CCSEEEECCSS-CEEEEE-----------TTEEEEECCBGG----GTEEEEEETTT----TEEEEEEC
T ss_pred CCCEEEEcccc-cCcccc-----------CCceEEEecccC----CCceEEEEecc----eEeeeccc
Confidence 58999999886 444444 358999999997 37999999864 56666654
No 27
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8
Probab=72.15 E-value=12 Score=35.02 Aligned_cols=54 Identities=24% Similarity=0.182 Sum_probs=34.1
Q ss_pred HHHHHHHHHHc--cCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCC
Q 006976 374 PLKELISYAKR--KQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDAN 448 (623)
Q Consensus 374 pL~~ll~~~~~--~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~ 448 (623)
-+..+++.+++ .+||.||++|.+++.. + + +.++ ++.|.+ ++ ..+++|++.+|..
T Consensus 29 ~~~~l~~~~~~~~~~~D~vi~~GDl~~~~-~-----~----~~~~-----~~~l~~----l~--~~~~~v~GNhD~~ 84 (195)
T 1xm7_A 29 FEIVILTNLLKVLKPEDTLYHLGDFTWHF-N-----D----KNEY-----LRIWKA----LP--GRKILVMGNHDKD 84 (195)
T ss_dssp HHHHHHHHHHTTCCTTCEEEECSCCBSCS-C-----C----TTSH-----HHHHHH----SS--SEEEEECCTTCCC
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCCCCc-h-----h----HHHH-----HHHHHH----CC--CCEEEEeCCCCCc
Confidence 45566667776 5899999999998752 1 1 1111 111222 22 3699999999974
No 28
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*
Probab=71.41 E-value=4.1 Score=40.76 Aligned_cols=69 Identities=13% Similarity=0.101 Sum_probs=49.4
Q ss_pred CCeEEEEEeCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhc
Q 006976 353 EEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYM 432 (623)
Q Consensus 353 ~~l~I~vAsGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~ 432 (623)
..++|+|.|.-.. +++.|..+++.+....+|.+|++|.+++... . ..+ +++.|.+ .
T Consensus 10 ~~~~i~~iSDiHg-----~~~~l~~vl~~~~~~~~D~ii~~GDlv~~g~-~---------~~~-----~~~~l~~----~ 65 (270)
T 3qfm_A 10 DMTKIALLSDIHG-----NTTALEAVLADARQLGVDEYWLLGDILMPGT-G---------RRR-----ILDLLDQ----L 65 (270)
T ss_dssp -CEEEEEECCCTT-----CHHHHHHHHHHHHHTTCCEEEECSCCSSSSS-C---------SHH-----HHHHHHT----S
T ss_pred cccEEEEEecCCC-----CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCC-C---------HHH-----HHHHHHc----c
Confidence 5689999987652 4688999999998889999999999998531 1 112 3333332 2
Q ss_pred CCceEEEEecCCCCCC
Q 006976 433 GSEVRAILVPSIRDAN 448 (623)
Q Consensus 433 ~~~~~VvlVPS~rD~~ 448 (623)
..+++|+++.|..
T Consensus 66 ---~~~~~v~GNhD~~ 78 (270)
T 3qfm_A 66 ---PITARVLGNWEDS 78 (270)
T ss_dssp ---CEEEECCCHHHHH
T ss_pred ---CCEEEEcCChHHH
Confidence 2588999999864
No 29
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=70.16 E-value=10 Score=38.68 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=31.6
Q ss_pred eCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 361 AGPFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 361 sGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
-=||+.+..+|++.|..+++++.+...|-|+++|
T Consensus 20 vTPF~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~G 53 (303)
T 2wkj_A 20 LTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGG 53 (303)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHHTTCSEEEESS
T ss_pred EcCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECe
Confidence 4589988899999999999999999999999999
No 30
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A
Probab=70.01 E-value=5.3 Score=38.72 Aligned_cols=70 Identities=13% Similarity=0.149 Sum_probs=46.8
Q ss_pred eEEEEEeCCCcCCCCCCchHHHHHHHHHH---cc--CCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHH
Q 006976 355 ISMIIAAGPFTTTDNLYFEPLKELISYAK---RK--QPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYV 429 (623)
Q Consensus 355 l~I~vAsGPft~~d~l~~epL~~ll~~~~---~~--~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~ 429 (623)
++|++.|.... .++.|..+++.++ .. +||.||++|.++|..- ...+ +++.|.++.
T Consensus 2 m~i~~isD~H~-----~~~~l~~~l~~~~~~~~~~~~~d~ii~~GD~~~~g~----------~~~~-----~~~~l~~l~ 61 (252)
T 1nnw_A 2 VYVAVLANIAG-----NLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFP----------YPKE-----VIEVIKDLT 61 (252)
T ss_dssp CEEEEEECCTT-----CHHHHHHHHHHHHHHHHTTCCEEEEEEESCSSSSSS----------CHHH-----HHHHHHHHH
T ss_pred cEEEEEeecCC-----CHHHHHHHHHHHHhhhhccCCCCEEEEeCccCCCCC----------CHHH-----HHHHHHhhH
Confidence 46788887652 4678889998887 66 8999999999988421 0112 222333332
Q ss_pred HhcCCceEEEEecCCCCCC
Q 006976 430 EYMGSEVRAILVPSIRDAN 448 (623)
Q Consensus 430 ~~~~~~~~VvlVPS~rD~~ 448 (623)
+ ...+++|++++|..
T Consensus 62 ~----~~~~~~v~GNhD~~ 76 (252)
T 1nnw_A 62 K----KENVKIIRGKYDQI 76 (252)
T ss_dssp H----HSCEEEECCHHHHH
T ss_pred h----hcCeeEEecchHHH
Confidence 2 12489999999964
No 31
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=68.35 E-value=12 Score=38.38 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=31.5
Q ss_pred eCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 361 AGPFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 361 sGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
-=||+.+..+|++.|..+++++.+...|-|+++|
T Consensus 25 vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~G 58 (304)
T 3cpr_A 25 VTPFTESGDIDIAAGREVAAYLVDKGLDSLVLAG 58 (304)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHHTTCCEEEESS
T ss_pred eccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 3489888899999999999999999999999999
No 32
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=67.31 E-value=12 Score=37.97 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=30.8
Q ss_pred CCCcCCCCCCchHHHHHHHHHHc-cCCcEEEEeC
Q 006976 362 GPFTTTDNLYFEPLKELISYAKR-KQPQLLILLG 394 (623)
Q Consensus 362 GPft~~d~l~~epL~~ll~~~~~-~~PdvlIL~G 394 (623)
=||+.+..+|++.|..+++++.+ ...|-|+++|
T Consensus 13 TPf~~dg~iD~~~l~~lv~~li~~~Gv~gl~~~G 46 (293)
T 1f6k_A 13 VSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGG 46 (293)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHHTSCCSEEEESS
T ss_pred cCCCCCCCcCHHHHHHHHHHHHhhCCCcEEEeCc
Confidence 48988889999999999999999 9999999999
No 33
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=67.22 E-value=13 Score=38.01 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=31.6
Q ss_pred eCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 361 AGPFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 361 sGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
-=||+.+..+|++.|..+++++.+...|-++++|
T Consensus 24 vTPf~~dg~iD~~~l~~lv~~li~~Gv~gi~v~G 57 (304)
T 3l21_A 24 VTPFSGDGSLDTATAARLANHLVDQGCDGLVVSG 57 (304)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHHTTCSEEEESS
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCc
Confidence 3499988899999999999999999999999999
No 34
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=67.20 E-value=11 Score=38.46 Aligned_cols=34 Identities=21% Similarity=0.438 Sum_probs=31.5
Q ss_pred eCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 361 AGPFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 361 sGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
-=||+.+..+|++.|..+++++.+...|-|+++|
T Consensus 21 vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~G 54 (301)
T 1xky_A 21 VTPFDINGNIDFAKTTKLVNYLIDNGTTAIVVGG 54 (301)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESS
T ss_pred ECcCCCCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 3489888899999999999999999999999999
No 35
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=65.56 E-value=13 Score=38.46 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=31.0
Q ss_pred CCCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 362 GPFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 362 GPft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
=||+.+..+||+.|..+++++.+...|-|+++|
T Consensus 44 TPF~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~G 76 (332)
T 2r8w_A 44 TPADEAGRVDIEAFSALIARLDAAEVDSVGILG 76 (332)
T ss_dssp CCBCTTCCBCHHHHHHHHHHHHHHTCSEEEESS
T ss_pred CCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 489888899999999999999999999999999
No 36
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=65.49 E-value=29 Score=31.48 Aligned_cols=75 Identities=15% Similarity=0.111 Sum_probs=49.7
Q ss_pred ccCccEEEEEEEEECC---CCCCCCceEEEeeccCCCCCeEEEeecCCCCcccccCCCEEEEEeecCCCCeEEEeEeccC
Q 006976 244 ASQRTLFAVGMICCDG---DGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASKLVDQ 320 (623)
Q Consensus 244 ~s~~~v~vvGrI~~d~---egkLn~~sv~LE~s~~~~~G~rV~Ldls~l~~~slFPGQIV~v~G~n~~G~~f~V~ei~~~ 320 (623)
.....+.+-|+|.-.+ +..-+.-+..|.+ ..+..|++....+.---|=.||=|+++|+...++.|.+++|+.-
T Consensus 30 ~~g~~iRvgG~V~~GSv~r~~~~~~v~F~vtD----~~~~~v~V~Y~GilPDlFrEGqgVVa~G~l~~~g~F~A~eVLaK 105 (136)
T 1j6q_A 30 EAGQRIRVGGMVTVGSMVRDPNSLHVQFAVHD----SLGGEILVTYDDLLPDLFREGQGIVAQGVLGEDGKLAATEVLAK 105 (136)
T ss_dssp CTTCEEEEEEEECTTCCEECTTSSCEEEEEEC----TTCCCEEEEECSCCTTSCCSSSEEEEEEEECSTTSEEEEEEECC
T ss_pred CCCCEEEEeEEEeCCcEEecCCCCEEEEEEEc----CCCCEEEEEECCCCCccccCCCeEEEEEEECCCCeEEEEEEEec
Confidence 3456899999997433 1011122444432 13567888777765444558999999999976779999999965
Q ss_pred CC
Q 006976 321 IP 322 (623)
Q Consensus 321 ~P 322 (623)
.|
T Consensus 106 hd 107 (136)
T 1j6q_A 106 HD 107 (136)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 37
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=65.30 E-value=12 Score=38.05 Aligned_cols=55 Identities=24% Similarity=0.416 Sum_probs=41.1
Q ss_pred CCCcCCCCCCchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCc-cccHHHHHHHHHHHHHHHH
Q 006976 362 GPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTT-DSSFDEIFHLEILRRLQDY 428 (623)
Q Consensus 362 GPft~~d~l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~-~~t~~~lF~~~il~~l~~~ 428 (623)
=||+.+..+|++.|..+++++.+...|-|+++| ..|+. ..|.+| +.++++...+.
T Consensus 11 TPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~G----------ttGE~~~Ls~~E--r~~v~~~~~~~ 66 (292)
T 2ojp_A 11 TPMDEKGNVCRASLKKLIDYHVASGTSAIVSVG----------TTGESATLNHDE--HADVVMMTLDL 66 (292)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHHHTCCEEEESS----------TTTTGGGSCHHH--HHHHHHHHHHH
T ss_pred ccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECc----------cccchhhCCHHH--HHHHHHHHHHH
Confidence 488888899999999999999999999999999 33554 356666 22355544443
No 38
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=63.50 E-value=14 Score=37.51 Aligned_cols=34 Identities=18% Similarity=0.461 Sum_probs=31.6
Q ss_pred eCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 361 AGPFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 361 sGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
-=||+.+..+|++.|..+++++.+...|-|+++|
T Consensus 16 vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~G 49 (297)
T 3flu_A 16 ITPMNQDGSIHYEQLRDLIDWHIENGTDGIVAVG 49 (297)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHHTTCCEEEESS
T ss_pred eccCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCc
Confidence 3489988899999999999999999999999999
No 39
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=63.41 E-value=29 Score=31.50 Aligned_cols=75 Identities=15% Similarity=0.132 Sum_probs=49.8
Q ss_pred ccCccEEEEEEEEECC---CCCCCCceEEEeeccCCCCCeEEEeecCCCCcccccCCCEEEEEeecCCCCeEEEeEeccC
Q 006976 244 ASQRTLFAVGMICCDG---DGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASKLVDQ 320 (623)
Q Consensus 244 ~s~~~v~vvGrI~~d~---egkLn~~sv~LE~s~~~~~G~rV~Ldls~l~~~slFPGQIV~v~G~n~~G~~f~V~ei~~~ 320 (623)
.....+.+-|+|.-.+ +..-+.-+..|.+ .+..|++....+.---|=.||=|+++|+...++.|.|++|+.-
T Consensus 26 ~~g~~iRvgG~V~~GSv~r~~~~~~v~F~vtD-----~~~~v~V~Y~GilPDlFrEGqgVVa~G~l~~~g~F~A~eVLAK 100 (136)
T 1sr3_A 26 EVGQRLRVGGMVMPGSVQRDPNSLKVTFTIYD-----AEGSVDVSYEGILPDLFREGQGVVVQGELEKGNHILAKEVLAK 100 (136)
T ss_dssp CTTSEEEEEEEECTTTCEECSSSSEEEEEEEC-----SSCEEEEEEESCCCTTCCTTSEEEEEEEECSSSEEEESSCBCC
T ss_pred CCCCEEEEeeEEeCCcEEEcCCCCEEEEEEEe-----CCcEEEEEECCCCCccccCCCeEEEEEEECCCCeEEEEEEEec
Confidence 3456899999998433 1101112333332 3557777777665444447999999999977789999999976
Q ss_pred CCC
Q 006976 321 IPL 323 (623)
Q Consensus 321 ~Pl 323 (623)
.|-
T Consensus 101 hde 103 (136)
T 1sr3_A 101 HDE 103 (136)
T ss_dssp SCC
T ss_pred CCC
Confidence 553
No 40
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=63.40 E-value=12 Score=37.92 Aligned_cols=32 Identities=22% Similarity=0.443 Sum_probs=29.9
Q ss_pred CCCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 362 GPFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 362 GPft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
=||+ +..+|++.|..+++++.+...|-|+++|
T Consensus 11 TPf~-dg~iD~~~l~~lv~~li~~Gv~gl~~~G 42 (289)
T 2yxg_A 11 TPFK-NKEVDFDGLEENINFLIENGVSGIVAVG 42 (289)
T ss_dssp CCEE-TTEECHHHHHHHHHHHHHTTCSEEEESS
T ss_pred cCcC-CCCcCHHHHHHHHHHHHHCCCCEEEECc
Confidence 3898 8899999999999999999999999999
No 41
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=63.18 E-value=12 Score=37.89 Aligned_cols=32 Identities=22% Similarity=0.510 Sum_probs=30.0
Q ss_pred CCCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 362 GPFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 362 GPft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
=||+ +..+|++.|..+++++.+...|-|+++|
T Consensus 11 TPf~-dg~iD~~~l~~lv~~li~~Gv~gl~~~G 42 (294)
T 2ehh_A 11 TPFK-EGEVDYEALGNLIEFHVDNGTDAILVCG 42 (294)
T ss_dssp CCEE-TTEECHHHHHHHHHHHHTTTCCEEEESS
T ss_pred cCcC-CCCcCHHHHHHHHHHHHHCCCCEEEECc
Confidence 4899 8899999999999999999999999999
No 42
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=62.37 E-value=14 Score=37.37 Aligned_cols=33 Identities=12% Similarity=0.397 Sum_probs=30.9
Q ss_pred CCCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 362 GPFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 362 GPft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
=||+.+..+|++.|..+++++.+...|-++++|
T Consensus 11 TPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~G 43 (291)
T 3tak_A 11 TPMLKDGGVDWKSLEKLVEWHIEQGTNSIVAVG 43 (291)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHHHTCCEEEESS
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHCCCCEEEECc
Confidence 489988899999999999999999999999999
No 43
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=61.83 E-value=13 Score=38.76 Aligned_cols=33 Identities=24% Similarity=0.177 Sum_probs=30.8
Q ss_pred CCCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 362 GPFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 362 GPft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
=||+.+..+|++.|..+++++.+...|-|+++|
T Consensus 41 TPF~~dg~ID~~~l~~lv~~li~~Gv~Gl~v~G 73 (343)
T 2v9d_A 41 TIFTADGQLDKPGTAALIDDLIKAGVDGLFFLG 73 (343)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHHTTCSCEEESS
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCc
Confidence 489888899999999999999999999999999
No 44
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=60.89 E-value=14 Score=37.97 Aligned_cols=34 Identities=18% Similarity=0.506 Sum_probs=31.7
Q ss_pred eCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 361 AGPFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 361 sGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
-=||+.+..+|++.|..+++++.+...|-++++|
T Consensus 32 vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~G 65 (314)
T 3qze_A 32 VTPFDAQGRLDWDSLAKLVDFHLQEGTNAIVAVG 65 (314)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHHHTCCEEEESS
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 3489999999999999999999999999999998
No 45
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=60.42 E-value=11 Score=38.67 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=31.7
Q ss_pred eCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 361 AGPFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 361 sGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
-=||+.+..+||+.|..+++++.+...|-|+++|
T Consensus 33 vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gi~v~G 66 (315)
T 3na8_A 33 ITPFAADGGLDLPALGRSIERLIDGGVHAIAPLG 66 (315)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHHTTCSEEECSS
T ss_pred eCcCCCCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 3489989999999999999999999999999999
No 46
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=60.41 E-value=13 Score=38.02 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=31.0
Q ss_pred CCCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 362 GPFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 362 GPft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
=||+.+..+|++.|..+++++.+...|-|+++|
T Consensus 18 TPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~G 50 (309)
T 3fkr_A 18 TTFADTGDLDLASQKRAVDFMIDAGSDGLCILA 50 (309)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHHTTCSCEEESS
T ss_pred CCCCcCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 389988899999999999999999999999999
No 47
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=60.39 E-value=20 Score=37.72 Aligned_cols=65 Identities=18% Similarity=0.370 Sum_probs=46.1
Q ss_pred eCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCc-cccHHHHHHHHHHHHHHHHHHhcCCceEEE
Q 006976 361 AGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTT-DSSFDEIFHLEILRRLQDYVEYMGSEVRAI 439 (623)
Q Consensus 361 sGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~-~~t~~~lF~~~il~~l~~~~~~~~~~~~Vv 439 (623)
-=||+.+..+|++.|..+++++.+...|-|+++| ..|+. ..|.+| +.++++...+. ...++.||
T Consensus 68 vTPF~~dg~ID~~al~~lv~~li~~Gv~Gl~v~G----------TTGE~~~Ls~eE--r~~vi~~~ve~---~~grvpVi 132 (360)
T 4dpp_A 68 KTPYLPDGRFDLEAYDDLVNIQIQNGAEGVIVGG----------TTGEGQLMSWDE--HIMLIGHTVNC---FGGSIKVI 132 (360)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESS----------TTTTGGGSCHHH--HHHHHHHHHHH---HTTTSEEE
T ss_pred eCcCCCCCCcCHHHHHHHHHHHHHcCCCEEEecc----------cccChhhCCHHH--HHHHHHHHHHH---hCCCCeEE
Confidence 4599999999999999999999999999999999 33543 345665 22345444333 23456665
Q ss_pred E
Q 006976 440 L 440 (623)
Q Consensus 440 l 440 (623)
.
T Consensus 133 a 133 (360)
T 4dpp_A 133 G 133 (360)
T ss_dssp E
T ss_pred E
Confidence 4
No 48
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=59.95 E-value=13 Score=38.30 Aligned_cols=34 Identities=9% Similarity=0.177 Sum_probs=31.7
Q ss_pred eCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 361 AGPFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 361 sGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
-=||+.+..+||+.|..+++++.+...|-|+++|
T Consensus 31 vTPf~~dg~iD~~~l~~li~~li~~Gv~Gl~v~G 64 (315)
T 3si9_A 31 ITPFDDNGAIDEKAFCNFVEWQITQGINGVSPVG 64 (315)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHHTTCSEEECSS
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCc
Confidence 4589988899999999999999999999999999
No 49
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=59.32 E-value=12 Score=38.10 Aligned_cols=34 Identities=15% Similarity=0.235 Sum_probs=31.3
Q ss_pred eCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 361 AGPFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 361 sGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
-=||+.+..+||+.|..+++++.+...|-|+++|
T Consensus 12 vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~G 45 (294)
T 3b4u_A 12 TTPFKTDGTVDIDAMIAHARRCLSNGCDSVTLFG 45 (294)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHHTTCSEEEESS
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 3489888899999999999999999999999999
No 50
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=59.06 E-value=17 Score=36.84 Aligned_cols=32 Identities=34% Similarity=0.647 Sum_probs=29.6
Q ss_pred CCCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 362 GPFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 362 GPft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
=||+.+. +|++.|..+++++.+...|-|+++|
T Consensus 12 TPf~~dg-iD~~~l~~lv~~li~~Gv~gl~~~G 43 (291)
T 3a5f_A 12 TPFTNTG-VDFDKLSELIEWHIKSKTDAIIVCG 43 (291)
T ss_dssp CCBCSSS-BCHHHHHHHHHHHHHTTCCEEEESS
T ss_pred cCcCCCC-cCHHHHHHHHHHHHHcCCCEEEECc
Confidence 4888778 9999999999999999999999999
No 51
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=58.12 E-value=13 Score=38.16 Aligned_cols=64 Identities=14% Similarity=0.329 Sum_probs=44.7
Q ss_pred CCC-cCCCCCCchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCc-cccHHHHHHHHHHHHHHHHHHhcCCceEEE
Q 006976 362 GPF-TTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTT-DSSFDEIFHLEILRRLQDYVEYMGSEVRAI 439 (623)
Q Consensus 362 GPf-t~~d~l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~-~~t~~~lF~~~il~~l~~~~~~~~~~~~Vv 439 (623)
=|| +.+..+||+.|..+++++.+...|-|+++| ..|+. ..|.+| +.++++...+.+ ..++.||
T Consensus 21 TPF~~~dg~iD~~~l~~lv~~li~~Gv~gl~v~G----------tTGE~~~Ls~eE--r~~vi~~~~~~~---~grvpVi 85 (314)
T 3d0c_A 21 VPFLEGTREIDWKGLDDNVEFLLQNGIEVIVPNG----------NTGEFYALTIEE--AKQVATRVTELV---NGRATVV 85 (314)
T ss_dssp CCBCTTTCCBCHHHHHHHHHHHHHTTCSEECTTS----------GGGTGGGSCHHH--HHHHHHHHHHHH---TTSSEEE
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHcCCCEEEECc----------ccCChhhCCHHH--HHHHHHHHHHHh---CCCCeEE
Confidence 489 888899999999999999999999999998 33544 356665 223554444333 2355555
Q ss_pred E
Q 006976 440 L 440 (623)
Q Consensus 440 l 440 (623)
.
T Consensus 86 a 86 (314)
T 3d0c_A 86 A 86 (314)
T ss_dssp E
T ss_pred e
Confidence 3
No 52
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=58.01 E-value=13 Score=38.11 Aligned_cols=33 Identities=30% Similarity=0.553 Sum_probs=30.7
Q ss_pred eCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 361 AGPFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 361 sGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
-=||+ +..+|++.|..+++++.+...|-|+++|
T Consensus 22 vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~v~G 54 (306)
T 1o5k_A 22 VTPFK-NGELDLESYERLVRYQLENGVNALIVLG 54 (306)
T ss_dssp CCCEE-TTEECHHHHHHHHHHHHHTTCCEEEESS
T ss_pred ecCcC-CCCcCHHHHHHHHHHHHHcCCCEEEeCc
Confidence 34899 8999999999999999999999999999
No 53
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=57.61 E-value=14 Score=37.75 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=30.9
Q ss_pred CCCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 362 GPFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 362 GPft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
=||+.+..+||+.|..+++++.+...|-|+++|
T Consensus 24 TPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~G 56 (307)
T 3s5o_A 24 TPFTATAEVDYGKLEENLHKLGTFPFRGFVVQG 56 (307)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHTTSCCSEEEESS
T ss_pred ccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 389988899999999999999999999999999
No 54
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=57.20 E-value=15 Score=37.78 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=31.5
Q ss_pred eCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 361 AGPFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 361 sGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
-=||+.+..+|++.|..+++++.+...|-|+++|
T Consensus 16 vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~G 49 (311)
T 3h5d_A 16 ITPFHEDGSINFDAIPALIEHLLAHHTDGILLAG 49 (311)
T ss_dssp CCCBCTTSSBCTTHHHHHHHHHHHTTCCCEEESS
T ss_pred ecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 3489988899999999999999999999999999
No 55
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=55.54 E-value=16 Score=37.53 Aligned_cols=33 Identities=15% Similarity=0.309 Sum_probs=31.0
Q ss_pred CCCcC-CCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 362 GPFTT-TDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 362 GPft~-~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
=||+. +..+||+.|..+++++.+...|-|+++|
T Consensus 21 TPf~~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~G 54 (316)
T 3e96_A 21 TPFRKSDGSIDWHHYKETVDRIVDNGIDVIVPCG 54 (316)
T ss_dssp CCBCTTTCCBCHHHHHHHHHHHHTTTCCEECTTS
T ss_pred CCccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCc
Confidence 48998 8899999999999999999999999999
No 56
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*
Probab=54.78 E-value=14 Score=36.90 Aligned_cols=48 Identities=13% Similarity=0.148 Sum_probs=37.9
Q ss_pred CCCcEEEcCCCCcceEEEecCCCCCCccccceEEEEcCCccccCCC---------CceEEEEEEcCC
Q 006976 555 TIPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEG---------SGTFAEIYYHGS 612 (623)
Q Consensus 555 ~~PDILIlPS~l~~F~k~v~~~~~~~~~~~~~~v~INPG~l~k~~~---------~Gtya~l~v~~~ 612 (623)
...|++|+++.-.++++.+. .++++||||+...... ..+||.+.+...
T Consensus 163 ~~~d~~i~GHtH~~~~~~~~----------~~~~~iNpGSvg~pr~~~~~~~~~~~asyaild~~~~ 219 (270)
T 3qfm_A 163 PPCDIAVYGHIHQQLLRYGT----------GGQLIVNPGSIGQPFFLDAQLRKDLRAQYMILEFDDK 219 (270)
T ss_dssp TTCSEEECCSSCSEEEEECT----------TSCEEEEECCSSSCCCSSTTGGGCCCEEEEEEEEETT
T ss_pred cCCCEEEECCcCchHheecc----------CCEEEEECCCccCCCCCCccccCCCCCEEEEEEecCC
Confidence 35799999999888887752 3599999999986532 479999998763
No 57
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=53.28 E-value=17 Score=37.45 Aligned_cols=34 Identities=26% Similarity=0.372 Sum_probs=31.5
Q ss_pred eCCCc-CCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 361 AGPFT-TTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 361 sGPft-~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
-=||+ .+..+||+.|..+++++.+...|-|+++|
T Consensus 19 vTPf~~~dg~iD~~~l~~lv~~li~~Gv~gl~v~G 53 (318)
T 3qfe_A 19 VTFFDSKTDTLDLASQERYYAYLARSGLTGLVILG 53 (318)
T ss_dssp CCCEETTTTEECHHHHHHHHHHHHTTTCSEEEESS
T ss_pred eCCccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCc
Confidence 45898 78899999999999999999999999999
No 58
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=52.99 E-value=17 Score=36.80 Aligned_cols=32 Identities=28% Similarity=0.533 Sum_probs=29.9
Q ss_pred CCCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 362 GPFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 362 GPft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
=||+.+ .+|++.|..+++++.+...|-|+++|
T Consensus 13 TPf~~d-~iD~~~l~~lv~~li~~Gv~gl~v~G 44 (292)
T 3daq_A 13 TPFTNN-KVNLEALKAHVNFLLENNAQAIIVNG 44 (292)
T ss_dssp CCEETT-EECHHHHHHHHHHHHHTTCCEEEESS
T ss_pred cCcCCC-CcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 489888 99999999999999999999999999
No 59
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0
Probab=48.33 E-value=16 Score=35.53 Aligned_cols=66 Identities=17% Similarity=0.126 Sum_probs=45.5
Q ss_pred CeEEEEEeCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcC
Q 006976 354 EISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMG 433 (623)
Q Consensus 354 ~l~I~vAsGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~ 433 (623)
.++|++.|... -++..|..+++.+. +||.+|++|.++|... ...+ +++.|.++ +
T Consensus 3 ~mri~~isDiH-----g~~~~l~~~l~~~~--~~d~ii~~GDl~~~g~----------~~~~-----~~~~l~~~----~ 56 (246)
T 3rqz_A 3 AMRILIISDVH-----ANLVALEAVLSDAG--RVDDIWSLGDIVGYGP----------RPRE-----CVELVRVL----A 56 (246)
T ss_dssp CCCEEEECCCT-----TCHHHHHHHHHHHC--SCSEEEECSCCSSSSS----------CHHH-----HHHHHHHH----C
T ss_pred CcEEEEEeecC-----CCHHHHHHHHHhcc--CCCEEEECCCcCCCCC----------CHHH-----HHHHHHhc----C
Confidence 46788888765 35678888888777 9999999999998532 1122 23333322 2
Q ss_pred CceEEEEecCCCCCC
Q 006976 434 SEVRAILVPSIRDAN 448 (623)
Q Consensus 434 ~~~~VvlVPS~rD~~ 448 (623)
. +++|++++|..
T Consensus 57 -~--~~~v~GNhD~~ 68 (246)
T 3rqz_A 57 -P--NISVIGNHDWA 68 (246)
T ss_dssp -S--SEECCCHHHHH
T ss_pred -C--CEEEeCchHHH
Confidence 1 68999999975
No 60
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=48.00 E-value=13 Score=37.94 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=30.6
Q ss_pred CCCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 362 GPFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 362 GPft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
=||+.+..+||+.|..+++++.+...|-|+++|
T Consensus 14 TPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~G 46 (300)
T 3eb2_A 14 SPVDAEGRVRADVMGRLCDDLIQAGVHGLTPLG 46 (300)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHHTTCSCBBTTS
T ss_pred ccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 389988899999999999999999999999998
No 61
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=46.48 E-value=27 Score=35.51 Aligned_cols=64 Identities=14% Similarity=0.248 Sum_probs=44.3
Q ss_pred eCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCc-cccHHHHHHHHHHHHHHHHHHhcCC-ceEE
Q 006976 361 AGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTT-DSSFDEIFHLEILRRLQDYVEYMGS-EVRA 438 (623)
Q Consensus 361 sGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~-~~t~~~lF~~~il~~l~~~~~~~~~-~~~V 438 (623)
-=|| .+..+|++.|..+++++.+...|-|+++| ..|+. ..|.+| ++++++...+.+ .. ++.|
T Consensus 17 vTPf-~dg~iD~~~l~~lv~~li~~Gv~gl~v~G----------ttGE~~~Ls~~E--r~~v~~~~~~~~---~g~rvpv 80 (301)
T 3m5v_A 17 ITPF-KNGKVDEQSYARLIKRQIENGIDAVVPVG----------TTGESATLTHEE--HRTCIEIAVETC---KGTKVKV 80 (301)
T ss_dssp CCCE-ETTEECHHHHHHHHHHHHHTTCCEEECSS----------TTTTGGGSCHHH--HHHHHHHHHHHH---TTSSCEE
T ss_pred ecCc-CCCCCCHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHH--HHHHHHHHHHHh---CCCCCeE
Confidence 3488 78899999999999999999999999999 23543 356666 223555444433 33 4555
Q ss_pred EE
Q 006976 439 IL 440 (623)
Q Consensus 439 vl 440 (623)
|.
T Consensus 81 ia 82 (301)
T 3m5v_A 81 LA 82 (301)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 62
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=45.67 E-value=48 Score=33.82 Aligned_cols=105 Identities=10% Similarity=0.132 Sum_probs=59.0
Q ss_pred CCeEEEEEeCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhc
Q 006976 353 EEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYM 432 (623)
Q Consensus 353 ~~l~I~vAsGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~ 432 (623)
..++|++.|.-...... | .-.++|+||++|.++|... .+++ +. +++ +++.+
T Consensus 58 ~~mri~~iSD~H~~~~~-----l-------~i~~~D~vi~aGDl~~~g~-----------~~e~-~~-~~~----~L~~l 108 (296)
T 3rl5_A 58 GHTRFVCISDTRSRTDG-----I-------QMPYGDILLHTGDFTELGL-----------PSEV-KK-FND----WLGNL 108 (296)
T ss_dssp TEEEEEEEBCCTTCCTT-----C-------CCCSCSEEEECSCCSSSCC-----------HHHH-HH-HHH----HHHTS
T ss_pred CCeEEEEEeeCCCCcch-----h-------ccCCCCEEEECCcccCCCC-----------HHHH-HH-HHH----HHHhC
Confidence 56899999986543321 1 1257999999999987532 2232 21 333 33333
Q ss_pred CCceEEEEecCCCCCCCCCC-CC----CCC-----CCC-------CCCCCCCceEEecCCcEEEECCEEEEee
Q 006976 433 GSEVRAILVPSIRDANHDFV-LP----QPP-----FDI-------QPPDIIHQITSLTNPGTFEANQIKVGCC 488 (623)
Q Consensus 433 ~~~~~VvlVPS~rD~~~~~v-~P----Qpp-----~~~-------~~~~l~~~v~~~~NP~~~~in~v~igvt 488 (623)
+ ...+++|++++|...+.. |- |.. +.. ....+..+++++-+ ..+.++|+.|..+
T Consensus 109 ~-~~~v~~V~GNHD~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~-~~~~i~Gl~i~Gs 179 (296)
T 3rl5_A 109 P-YEYKIVIAGNHELTFDKEFMADLVKQDYYRFPSVSKLKPEDFDNVQSLLTNSIYLQD-SEVTVKGFRIYGA 179 (296)
T ss_dssp C-CSEEEECCCTTCGGGCHHHHHHHTTSCGGGSHHHHTCCHHHHTTTGGGCTTSEECSS-EEEEETTEEEEEE
T ss_pred C-CCeEEEEcCCcccccchhhhhhhhcccccccccccccccchhhhHhhhcCCeEEecC-CcEEECCEEEEEe
Confidence 2 456899999999864321 11 000 000 01122345666655 4567889888654
No 63
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=42.25 E-value=22 Score=36.10 Aligned_cols=32 Identities=19% Similarity=0.372 Sum_probs=29.2
Q ss_pred CCCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 362 GPFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 362 GPft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
=|| .+..+|++.|..+++++.+...|-|+++|
T Consensus 11 TPf-~dg~iD~~~l~~lv~~li~~Gv~gi~v~G 42 (297)
T 2rfg_A 11 TPF-INGQVDEKALAGLVDWQIKHGAHGLVPVG 42 (297)
T ss_dssp CCE-ETTEECHHHHHHHHHHHHHTTCSEEECSS
T ss_pred cCc-CCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 378 77899999999999999999999999999
No 64
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=41.99 E-value=14 Score=29.84 Aligned_cols=48 Identities=8% Similarity=0.017 Sum_probs=35.7
Q ss_pred HHHHHHHHcCCCC-CChHHHHHHHHHHHHHcCCChhHHHHHHhhhhhhc
Q 006976 4 EIKAEFQKNGFNF-VDEGEVLKKCLTFCINYNLKPSDLVSSWEVYYLNR 51 (623)
Q Consensus 4 ~i~~ef~~fG~~~-~~~~~vl~kc~~lc~~y~l~~~dlv~~Weafs~~~ 51 (623)
+..+-|.++|+++ .-...-...+.+-|..+++|+++|+.++.++....
T Consensus 20 ~~~~vf~~~G~~c~~C~~a~~~tL~~Aa~~~gid~~~ll~~Ln~~~~~~ 68 (73)
T 2k5e_A 20 GVAGVLRSYNLGCIGCMGAQNESLEQGANAHGLNVEDILRDLNALALEH 68 (73)
T ss_dssp HHHHHHHHTTGGGGGTTTGGGSBHHHHHHHTTCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCCCCCccccccHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4566788888872 22112356788889999999999999999986653
No 65
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3
Probab=40.84 E-value=24 Score=33.53 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=32.5
Q ss_pred CeEEEEEeCCCcCCCCCCchHHHHHHHHHHcc-CCcEEEEeCcccCC
Q 006976 354 EISMIIAAGPFTTTDNLYFEPLKELISYAKRK-QPQLLILLGPFVDS 399 (623)
Q Consensus 354 ~l~I~vAsGPft~~d~l~~epL~~ll~~~~~~-~PdvlIL~GPFvD~ 399 (623)
.++|+|.|.-.- .++.|..+++.+... ++|.||++|.++|.
T Consensus 12 ~~~i~visDiHg-----~~~~l~~~l~~~~~~~~~d~~i~~GD~~~~ 53 (221)
T 1g5b_A 12 YRNIWVVGDLHG-----CYTNLMNKLDTIGFDNKKDLLISVGDLVDR 53 (221)
T ss_dssp CSCEEEECCCTT-----CHHHHHHHHHHHTCCTTTCEEEECSCCSSS
T ss_pred CceEEEEEcCCC-----CHHHHHHHHHHccCCCCCCEEEEeCCccCC
Confidence 457888887552 477888999888754 79999999999985
No 66
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=40.03 E-value=22 Score=36.04 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=29.2
Q ss_pred CCCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 362 GPFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 362 GPft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
=|| .+..+|++.|..+++++.+...|-++++|
T Consensus 11 TPf-~dg~iD~~~l~~lv~~li~~Gv~gl~~~G 42 (292)
T 2vc6_A 11 TPF-ADDRIDEVALHDLVEWQIEEGSFGLVPCG 42 (292)
T ss_dssp CCE-ETTEECHHHHHHHHHHHHHTTCSEEETTS
T ss_pred cCc-CCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 378 78899999999999999999999999998
No 67
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=38.92 E-value=20 Score=36.28 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=30.1
Q ss_pred CCCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 362 GPFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 362 GPft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
=||+.+..+|++.|..+++++.+...|-|+++|
T Consensus 9 TPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~G 41 (288)
T 2nuw_A 9 TPFDKQGKVNVDALKTHAKNLLEKGIDAIFVNG 41 (288)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHHTTCCEEEETS
T ss_pred cCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 388888899999999999999999999999998
No 68
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=38.81 E-value=21 Score=36.21 Aligned_cols=33 Identities=30% Similarity=0.295 Sum_probs=30.1
Q ss_pred CCCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 362 GPFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 362 GPft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
=||+.+..+|++.|..+++++.+...|-|+++|
T Consensus 9 TPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~G 41 (293)
T 1w3i_A 9 TPFTKDNRIDKEKLKIHAENLIRKGIDKLFVNG 41 (293)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESS
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 388888899999999999999999999999999
No 69
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei}
Probab=38.34 E-value=28 Score=34.39 Aligned_cols=40 Identities=23% Similarity=0.244 Sum_probs=32.4
Q ss_pred eEEEEEeCCCcCCCCCCchHHHHHHHHHHccCC-cEEEEeCcccCC
Q 006976 355 ISMIIAAGPFTTTDNLYFEPLKELISYAKRKQP-QLLILLGPFVDS 399 (623)
Q Consensus 355 l~I~vAsGPft~~d~l~~epL~~ll~~~~~~~P-dvlIL~GPFvD~ 399 (623)
.+|++.|.-. -.++.|..+++.+....+ |.+|++|.++|.
T Consensus 19 ~~i~visDiH-----g~~~~l~~~l~~~~~~~~~d~ii~~GD~vd~ 59 (262)
T 2qjc_A 19 GRVIIVGDIH-----GCRAQLEDLLRAVSFKQGSDTLVAVGDLVNK 59 (262)
T ss_dssp SCEEEECCCT-----TCHHHHHHHHHHHTCCTTTSEEEECSCCSSS
T ss_pred CeEEEEeCCC-----CCHHHHHHHHHHHhccCCCCEEEEecCCCCC
Confidence 3788888754 247889999998887766 999999999985
No 70
>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1
Probab=37.87 E-value=67 Score=33.73 Aligned_cols=79 Identities=8% Similarity=0.009 Sum_probs=47.1
Q ss_pred CCeEEEEEeCCCcCCCCCCchHHHHHHHHHHcc--CCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHH
Q 006976 353 EEISMIIAAGPFTTTDNLYFEPLKELISYAKRK--QPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVE 430 (623)
Q Consensus 353 ~~l~I~vAsGPft~~d~l~~epL~~ll~~~~~~--~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~ 430 (623)
.+++|++.+..-. .+. ....++.+.+. +||++|++|.+++.....-. -...++++++ +++.+.
T Consensus 125 ~~~~f~~~gD~~~-----~~~-~~~~l~~i~~~~~~~D~vl~~GD~~y~~~~~~~---~~~~~~~~~~--~l~~l~---- 189 (426)
T 1xzw_A 125 VPYVFGLIGDIGQ-----THD-SNTTLTHYEQNSAKGQAVLFMGDLSYSNRWPNH---DNNRWDTWGR--FSERSV---- 189 (426)
T ss_dssp CCEEEEEECSCTT-----BHH-HHHHHHHHHHCTTCCSEEEECSCCCCGGGSGGG---CTHHHHHHHH--HHHHHH----
T ss_pred CCeEEEEEEeCCC-----CCc-hHHHHHHHHhCCCCCCEEEeCCChhhcccCCcc---cchHHHHHHH--HHHHHH----
Confidence 5688988865422 121 23445555554 99999999999976432100 0123444322 333332
Q ss_pred hcCCceEEEEecCCCCCCC
Q 006976 431 YMGSEVRAILVPSIRDANH 449 (623)
Q Consensus 431 ~~~~~~~VvlVPS~rD~~~ 449 (623)
..+.++.+|+.+|...
T Consensus 190 ---~~~P~~~v~GNHD~~~ 205 (426)
T 1xzw_A 190 ---AYQPWIWTAGNHEIDY 205 (426)
T ss_dssp ---TTSCEECCCCGGGCCC
T ss_pred ---hcCCEEEecccccccc
Confidence 3567999999999864
No 71
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=36.78 E-value=16 Score=34.99 Aligned_cols=41 Identities=22% Similarity=0.466 Sum_probs=31.8
Q ss_pred CceEEEeeccCCCCCeEEEeecCCCCcccccCCCEEEEEeec
Q 006976 265 DKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSN 306 (623)
Q Consensus 265 ~~sv~LE~s~~~~~G~rV~Ldls~l~~~slFPGQIV~v~G~n 306 (623)
++.+..+.......| .|+|+-+.+....||+|.+|.++|+.
T Consensus 23 p~~l~V~ea~~~D~g-ivrl~p~~m~~Lgl~~GD~V~I~Gkr 63 (187)
T 3tiw_A 23 PNRLIVDEAINEDNS-VVSLSQPKMDELQLFRGDTVLLKGKK 63 (187)
T ss_dssp CCEEEEEECSSCCTT-EEEECHHHHHHHTCCTTCEEEEECST
T ss_pred CCeEEEcccccCCCc-EEEECHHHHHHcCCCCCCEEEEECCC
Confidence 444555544443455 99999999999999999999999975
No 72
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=36.33 E-value=23 Score=36.20 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=31.6
Q ss_pred eCCCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 361 AGPFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 361 sGPft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
-=||+.+..+||+.|..+++++.+...|-|+++|
T Consensus 17 vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~G 50 (313)
T 3dz1_A 17 PTPFHDDGKIDDVSIDRLTDFYAEVGCEGVTVLG 50 (313)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHHTTCSEEEEST
T ss_pred eCCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCc
Confidence 3489988999999999999999999999999999
No 73
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=33.39 E-value=49 Score=23.16 Aligned_cols=33 Identities=18% Similarity=0.142 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHcCCChhHHHHHHhhhhhhc
Q 006976 19 EGEVLKKCLTFCINYNLKPSDLVSSWEVYYLNR 51 (623)
Q Consensus 19 ~~~vl~kc~~lc~~y~l~~~dlv~~Weafs~~~ 51 (623)
++++++++-++|...+++-.+++.+|...++..
T Consensus 10 ~~~l~~~Ld~~a~~~g~srS~~ir~ai~~~l~~ 42 (45)
T 2cpg_A 10 SESVLENLEKMAREMGLSKSAMISVALENYKKG 42 (45)
T ss_dssp EHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 459999999999999999999999999888764
No 74
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=33.05 E-value=15 Score=29.87 Aligned_cols=43 Identities=16% Similarity=0.289 Sum_probs=32.7
Q ss_pred HHHHHHHcCCCC--CChHHHHHHHHHHHHHcCCChhHHHHHHhhhh
Q 006976 5 IKAEFQKNGFNF--VDEGEVLKKCLTFCINYNLKPSDLVSSWEVYY 48 (623)
Q Consensus 5 i~~ef~~fG~~~--~~~~~vl~kc~~lc~~y~l~~~dlv~~Weafs 48 (623)
..+-|.++|+++ ... .--..+.+-|..+++|+++|+.++.++-
T Consensus 19 ~~~vf~~~G~~C~gC~~-a~~~tLeeA~~~hgiD~d~ll~eLn~~i 63 (76)
T 2k53_A 19 TAPIFINNGMHCLGCPS-SMGESIEDACAVHGIDADKLVKELNEYF 63 (76)
T ss_dssp GHHHHHHTTCCCCSSCC-CCCSBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCc-cccccHHHHHHHcCCCHHHHHHHHHHHH
Confidence 456688899876 321 1235677889999999999999999874
No 75
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=32.09 E-value=25 Score=36.58 Aligned_cols=33 Identities=12% Similarity=0.066 Sum_probs=30.9
Q ss_pred CCCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 362 GPFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 362 GPft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
=||+.+..+||+.|..+++++.+...|-|+++|
T Consensus 36 TPF~~dg~ID~~~l~~lv~~li~~Gv~Gl~v~G 68 (344)
T 2hmc_A 36 TPCRQDRTPDFDALVRKGKELIADGMSAVVYCG 68 (344)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHHTTCCCEEESS
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCc
Confidence 489888899999999999999999999999999
No 76
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=31.92 E-value=21 Score=35.99 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=29.4
Q ss_pred CCCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 362 GPFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 362 GPft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
=||+.+..+|++.|..+++++.+. .|-|+++|
T Consensus 8 TPf~~dg~iD~~~l~~lv~~li~~-v~gl~v~G 39 (283)
T 2pcq_A 8 TPFDREGRLDEEAFRELAQALEPL-VDGLLVYG 39 (283)
T ss_dssp CCBCTTCCBCHHHHHHHHHHHGGG-SSCCEETC
T ss_pred CCCCCCCCcCHHHHHHHHHHHHhh-CCEEEECC
Confidence 489888899999999999999988 99999997
No 77
>2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG; 2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB: 2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A*
Probab=31.56 E-value=78 Score=33.12 Aligned_cols=78 Identities=9% Similarity=0.040 Sum_probs=46.7
Q ss_pred CCeEEEEEeCCCcCCCCCCchHHHHHHHHHHcc--CCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHH
Q 006976 353 EEISMIIAAGPFTTTDNLYFEPLKELISYAKRK--QPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVE 430 (623)
Q Consensus 353 ~~l~I~vAsGPft~~d~l~~epL~~ll~~~~~~--~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~ 430 (623)
.+++|++.+..-. .+... +.++.+++. +||.+|++|.+++....... -....+++ .. +++.+.
T Consensus 118 ~~~~f~~igD~~~-----~~~~~-~~l~~~~~~~~~~D~vl~~GDl~y~~~~~~~---~~~~~~~~-~~-~l~~~~---- 182 (424)
T 2qfp_A 118 VPYTFGLIGDLGQ-----SFDSN-TTLSHYELSPKKGQTVLFVGDLSYADRYPNH---DNVRWDTW-GR-FTERSV---- 182 (424)
T ss_dssp CCEEEEEECSCTT-----BHHHH-HHHHHHHTCSSCCCEEEECSCCSCGGGSGGG---CTHHHHHH-HH-HHHHHH----
T ss_pred CCeEEEEEEeCCC-----CCChH-HHHHHHHhCCCCCCEEEEcCccccccccccc---cchHHHHH-HH-HHHHHH----
Confidence 5688988875422 22222 345556554 89999999999987532110 01233332 32 333332
Q ss_pred hcCCceEEEEecCCCCCC
Q 006976 431 YMGSEVRAILVPSIRDAN 448 (623)
Q Consensus 431 ~~~~~~~VvlVPS~rD~~ 448 (623)
..+.++.+++.+|..
T Consensus 183 ---~~~P~~~v~GNHD~~ 197 (424)
T 2qfp_A 183 ---AYQPWIWTAGNHEIE 197 (424)
T ss_dssp ---TTSCEEECCCHHHHC
T ss_pred ---hcCCeEeecCCcccc
Confidence 356799999999975
No 78
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=31.38 E-value=21 Score=35.97 Aligned_cols=32 Identities=16% Similarity=0.194 Sum_probs=29.8
Q ss_pred CCCcCCCCCCchHHHHHHHHHHccCCcEEEEeC
Q 006976 362 GPFTTTDNLYFEPLKELISYAKRKQPQLLILLG 394 (623)
Q Consensus 362 GPft~~d~l~~epL~~ll~~~~~~~PdvlIL~G 394 (623)
=||+ +..+|++.|..+++++.+...|-|+++|
T Consensus 9 TPf~-dg~iD~~~l~~lv~~li~~Gv~gl~v~G 40 (286)
T 2r91_A 9 TTFR-GGRLDPELFANHVKNITSKGVDVVFVAG 40 (286)
T ss_dssp CCEE-TTEECHHHHHHHHHHHHHTTCCEEEETS
T ss_pred cCcC-CCccCHHHHHHHHHHHHHCCCCEEEECc
Confidence 3898 8899999999999999999999999999
No 79
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=29.71 E-value=23 Score=34.43 Aligned_cols=41 Identities=22% Similarity=0.470 Sum_probs=31.6
Q ss_pred CceEEEeeccCCCCCeEEEeecCCCCcccccCCCEEEEEeec
Q 006976 265 DKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSN 306 (623)
Q Consensus 265 ~~sv~LE~s~~~~~G~rV~Ldls~l~~~slFPGQIV~v~G~n 306 (623)
++.+..+.......| .|+|+-+.+....||+|.+|.++|+.
T Consensus 26 p~~l~V~ea~~~Drg-ivrl~p~~m~~Lgl~~GD~V~I~Gkr 66 (211)
T 3qwz_A 26 PNRLIVDEAINEDNS-VVSLSQPKMDELQLFRGDTVLLKGXK 66 (211)
T ss_dssp CEEEEEEECSCCCTT-EEEECHHHHHHHTCCBTCEEEEECST
T ss_pred CCeeEEcccccCCCc-EEEECHHHHHHcCCCCCCEEEEeCCC
Confidence 444555544433345 89999999999999999999999975
No 80
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=29.50 E-value=1.7e+02 Score=32.02 Aligned_cols=104 Identities=11% Similarity=0.142 Sum_probs=57.9
Q ss_pred cEEEEEEEEECCCCCCCCceEEEeeccCCCCCeEEEee-cC-----C-CCcccccCCCEEEEEeec--CCCCeEEEeEec
Q 006976 248 TLFAVGMICCDGDGHLNDKSVLLQSSVEHSGGQRVRLD-LH-----K-LGEFSLFPGQVVGIEGSN--PSGHCLIASKLV 318 (623)
Q Consensus 248 ~v~vvGrI~~d~egkLn~~sv~LE~s~~~~~G~rV~Ld-ls-----~-l~~~slFPGQIV~v~G~n--~~G~~f~V~ei~ 318 (623)
.-++++||++ |+|....-+.-. ..|...++. +- + ..--..+||+|||+.|.. ..|+.+...+
T Consensus 312 g~l~~~RV~s---G~l~~g~~v~~~----~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~~~~GDtl~~~~-- 382 (528)
T 3tr5_A 312 DRIAFLRIAS---GQYQKGMKAYHV----RLKKEIQINNALTFMAGKRENAEEAWPGDIIGLHNHGTIQIGDTFTQGE-- 382 (528)
T ss_dssp CEEEEEEEEE---SCEETTEEEEET----TTTEEEEESSCBCCBTTCSSCCSEECTTCEEEEEESSSCCTTCEEESSC--
T ss_pred ceEEEEEEec---CeEcCCCEEEec----CCCceEEEeeeEEEeCCCeeECCEECCCCEEEEcCCCCCccCCEEcCCC--
Confidence 3567888887 666655544432 234444432 11 1 112368999999999853 4788886432
Q ss_pred cCCCCCCCccccCCCchhhhhhhhccccccccCCCCeEEEEEeCCCcCCCCCCchHHHHHHHHHHccCCc
Q 006976 319 DQIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQ 388 (623)
Q Consensus 319 ~~~Pl~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~I~vAsGPft~~d~l~~epL~~ll~~~~~~~Pd 388 (623)
++.... .|. ..|. +..+--| .+..+++.|.+-|+++.++.|-
T Consensus 383 ---~~~~~~---~~~------------------~~P~-~~~~i~~---~~~~d~~kl~~aL~~L~~ED~~ 424 (528)
T 3tr5_A 383 ---RFKFTG---IPN------------------FASE-LFRLVRL---KDPLKQKALLKGLTQLSEEGAT 424 (528)
T ss_dssp ---CCCBCC---CEE------------------ECCS-EEEEEEE---SCGGGHHHHHHHHHHHHHTTSC
T ss_pred ---CcccCC---CCC------------------CCCC-EEEEEEE---CChhHHHHHHHHHHHHHhcCCe
Confidence 111111 000 0111 2222222 4667899999999999888874
No 81
>3kf8_B Protein TEN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=28.50 E-value=3.1e+02 Score=24.30 Aligned_cols=77 Identities=9% Similarity=0.193 Sum_probs=52.7
Q ss_pred CCCCCcccCccEEEEEEEEECCCCCCCCceEEEeec--cCCCCCeEEEeecCC----CCcccccCCCEEEEEeecCCCCe
Q 006976 238 PTDPTVASQRTLFAVGMICCDGDGHLNDKSVLLQSS--VEHSGGQRVRLDLHK----LGEFSLFPGQVVGIEGSNPSGHC 311 (623)
Q Consensus 238 ~~~~~~~s~~~v~vvGrI~~d~egkLn~~sv~LE~s--~~~~~G~rV~Ldls~----l~~~slFPGQIV~v~G~n~~G~~ 311 (623)
|-..+....+.|...|+|..-. -+.+.+.|+-- -..++...+.+|+.. +..-.+-+|++|=+.|.. +|+.
T Consensus 15 FP~aS~s~p~kVR~L~QVisYd---~~sa~L~l~~~p~~p~ss~~tv~VdI~~vL~~i~~~~~~vG~~VNI~Gyy-nGe~ 90 (123)
T 3kf8_B 15 FPEASISNPERLRILAQVKDFI---PHESTIVIDKVPTITSEQSTYINICIFNLLEACSSRVLVPGTLVNIDAFY-DGES 90 (123)
T ss_dssp CTTCBTTBCEEEEEEEEEEEEE---GGGTEEEEECCGGGCCSCCCCEEEECTTTTTTSCGGGGSTTCEEEEEEEE-CSSC
T ss_pred CccccccCCceEEEEEEEEEEc---CCCcEEEEEecCCCCCCCCeEEEEEHHHHHhhcCccccccceEEEEEEEe-cCcc
Confidence 3445566678899999998532 12334455521 112234457777655 456678899999999988 6999
Q ss_pred EEEeEec
Q 006976 312 LIASKLV 318 (623)
Q Consensus 312 f~V~ei~ 318 (623)
+.|-+++
T Consensus 91 i~~i~i~ 97 (123)
T 3kf8_B 91 INPVDIY 97 (123)
T ss_dssp EEEEEEE
T ss_pred ccEEEEE
Confidence 9999999
No 82
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture, hydrolase; 2.72A {Shigella flexneri 2A}
Probab=27.62 E-value=47 Score=33.30 Aligned_cols=67 Identities=19% Similarity=0.235 Sum_probs=43.2
Q ss_pred EEEEEeCCCcCCCCCCchHHHHHHHHHHc-cCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCC
Q 006976 356 SMIIAAGPFTTTDNLYFEPLKELISYAKR-KQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGS 434 (623)
Q Consensus 356 ~I~vAsGPft~~d~l~~epL~~ll~~~~~-~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~ 434 (623)
+|+|.+.-. -.|+.|..+++.+.. ..+|.+|++|.+||.-.. +. + +++.|.++ +
T Consensus 2 ~i~vigDiH-----G~~~~l~~ll~~~~~~~~~d~~v~lGD~vdrG~~---------s~-~-----~l~~l~~l----~- 56 (280)
T 2dfj_A 2 ATYLIGDVH-----GCYDELIALLHKVEFTPGKDTLWLTGDLVARGPG---------SL-D-----VLRYVKSL----G- 56 (280)
T ss_dssp CEEEECCCC-----SCHHHHHHHHHHTTCCTTTCEEEECSCCSSSSSC---------HH-H-----HHHHHHHT----G-
T ss_pred eEEEEecCC-----CCHHHHHHHHHHhCCCCCCCEEEEeCCcCCCCCc---------cH-H-----HHHHHHhC----C-
Confidence 355555433 247789999988876 578999999999985321 11 1 22223322 1
Q ss_pred ceEEEEecCCCCCC
Q 006976 435 EVRAILVPSIRDAN 448 (623)
Q Consensus 435 ~~~VvlVPS~rD~~ 448 (623)
.++++|.+++|..
T Consensus 57 -~~~~~v~GNHe~~ 69 (280)
T 2dfj_A 57 -DSVRLVLGNHDLH 69 (280)
T ss_dssp -GGEEECCCHHHHH
T ss_pred -CceEEEECCCcHH
Confidence 2689999998864
No 83
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=23.55 E-value=3.7e+02 Score=24.23 Aligned_cols=62 Identities=15% Similarity=0.228 Sum_probs=42.3
Q ss_pred CccEEEEEEEEECC-CCCCCCceEEEeeccCCCCCeEEEeecCCCCcccccCCCEEEEEeecCCCCeEEEeEe
Q 006976 246 QRTLFAVGMICCDG-DGHLNDKSVLLQSSVEHSGGQRVRLDLHKLGEFSLFPGQVVGIEGSNPSGHCLIASKL 317 (623)
Q Consensus 246 ~~~v~vvGrI~~d~-egkLn~~sv~LE~s~~~~~G~rV~Ldls~l~~~slFPGQIV~v~G~n~~G~~f~V~ei 317 (623)
...|.+|||+..-. +| .++.|++ +.|..|.+.+.. ...--++++|=|.|+-.+.....+...
T Consensus 43 Gk~VriVGkV~~~~~~G----~~~~l~s----~Dg~~VtV~l~~--pL~~~~~~~VEViG~V~~~~tI~~~~~ 105 (142)
T 2pi2_E 43 DKPVCFVGRLEKIHPTG----KMFILSD----GEGKNGTIELME--PLDEEISGIVEVVGRVTAKATILCTSY 105 (142)
T ss_dssp TCEEEEEEEEEEECTTS----SEEEEEC----TTSCEEEEECSS--CCSSCCCSEEEEEEEECTTSCEEEEEE
T ss_pred CCEEEEEEEEeEEcCCC----CEEEEEe----CCCcEEEEEeCC--CCCccCCCEEEEEEEECCCCcEEEEEE
Confidence 46899999999642 44 3778875 456688888763 112235899999999765556666554
No 84
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=23.00 E-value=1.5e+02 Score=25.58 Aligned_cols=60 Identities=20% Similarity=0.232 Sum_probs=39.9
Q ss_pred CccEEEEEEEEECCC------CCCCCceEEEeeccCCCCCeEEEeecC-CC-CcccccCCCEEEEEeec
Q 006976 246 QRTLFAVGMICCDGD------GHLNDKSVLLQSSVEHSGGQRVRLDLH-KL-GEFSLFPGQVVGIEGSN 306 (623)
Q Consensus 246 ~~~v~vvGrI~~d~e------gkLn~~sv~LE~s~~~~~G~rV~Ldls-~l-~~~slFPGQIV~v~G~n 306 (623)
+..|+++|||+.|.+ |+ .-.+.-|...|.....-.+++-.. ++ ....++-|.-|+|+|.-
T Consensus 11 ~N~V~LiGrl~~dpelr~t~~G~-~v~~f~lAV~R~~~~~Dfi~ivvw~klAe~~~~~kG~~v~v~G~l 78 (107)
T 4gs3_A 11 NNTVTLVGKVFTPLEFSHELYGE-KFFNFILEVPRLSETKDYLPITISNRLFEGMNLEVGTRVKIEGQL 78 (107)
T ss_dssp CSCEEEEEEECSCCEEEEEETTE-EEEEEEEEEECTTSCEEEEEEEEEGGGSTTCCCCTTCEEEEEEEE
T ss_pred CCEEEEEEEECCCceEEEecCCc-EEEEEEEEeCCCCCCCcEEEEEEEhHHhhHHhhcCCCEEEEEEEE
Confidence 456999999998865 32 112344666666555556776543 23 34467799999999974
No 85
>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A*
Probab=22.85 E-value=1.3e+02 Score=29.04 Aligned_cols=86 Identities=12% Similarity=0.091 Sum_probs=47.1
Q ss_pred CCeEEEEEeCCCcCCCCCC----chHHHHHH-HHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHH
Q 006976 353 EEISMIIAAGPFTTTDNLY----FEPLKELI-SYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQD 427 (623)
Q Consensus 353 ~~l~I~vAsGPft~~d~l~----~epL~~ll-~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~ 427 (623)
.+++|++.+........-. ...+.+.+ +.+++.+||.||++|.+++.... .... +..+.+.|+. ++..
T Consensus 5 ~~~~~~~isD~h~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~vv~~GD~~~~~g~--~~~~-~~~~~~~~~~-~~~~--- 77 (313)
T 1ute_A 5 PILRFVAVGDWGGVPNAPFHTAREMANAKAIATTVKTLGADFILSLGDNFYFTGV--HDAK-DKRFQETFED-VFSD--- 77 (313)
T ss_dssp CCEEEEEECSCCCCSSTTSSCHHHHHHHHHHHHHHHHHCCSEEEECSCCSTTTCC--SSTT-CTHHHHHTTT-TSCS---
T ss_pred CceEEEEEcccCCCCCccccCchHHHHHHHHHHHHHhcCCCEEEECCCccCcCCC--CCcc-hHHHHHHHHH-HcCc---
Confidence 5688999987754322110 12333333 34667899999999999875421 1111 1122222221 1100
Q ss_pred HHHhcCCceEEEEecCCCCCC
Q 006976 428 YVEYMGSEVRAILVPSIRDAN 448 (623)
Q Consensus 428 ~~~~~~~~~~VvlVPS~rD~~ 448 (623)
..+ ..+.+++||+.+|..
T Consensus 78 --~~l-~~~p~~~v~GNHD~~ 95 (313)
T 1ute_A 78 --PSL-RNVPWHVLAGNHDHL 95 (313)
T ss_dssp --GGG-TTCCEEECCCHHHHH
T ss_pred --hhh-cCCCEEEECCCCccC
Confidence 001 156799999999985
No 86
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=22.84 E-value=1.4e+02 Score=32.76 Aligned_cols=64 Identities=13% Similarity=0.240 Sum_probs=36.7
Q ss_pred cccCCCEEEEEeec--CCCCeEEEeEeccCCCCCCCccccCCCchhhhhhhhccccccccCCCC-eEEEEEeCCCcCCCC
Q 006976 293 SLFPGQVVGIEGSN--PSGHCLIASKLVDQIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEE-ISMIIAAGPFTTTDN 369 (623)
Q Consensus 293 slFPGQIV~v~G~n--~~G~~f~V~ei~~~~Pl~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-l~I~vAsGPft~~d~ 369 (623)
..++|+|||+.|.. ..|+.+.-.+- ++++ + .|. ..| +.+.|. | .+.
T Consensus 358 ~a~aGdiv~i~~l~~~~~Gdtl~~~~~---~~~~--~---~~~------------------~~P~~~~~v~--~---~~~ 406 (529)
T 2h5e_A 358 EAYPGDILGLHNHGTIQIGDTFTQGEM---MKFT--G---IPN------------------FAPELFRRIR--L---KDP 406 (529)
T ss_dssp EECTTCEEEECCSSCCCTTCEEESSCC---CCBC--C---CEE------------------ECCSEEEEEE--E---SCC
T ss_pred eECCCCEEEEeccCCCccCCEeecCCc---cccC--C---CCC------------------CCccEEEEEE--E---CCh
Confidence 68999999999974 36887764331 1111 1 100 112 223322 3 456
Q ss_pred CCchHHHHHHHHHHccCC
Q 006976 370 LYFEPLKELISYAKRKQP 387 (623)
Q Consensus 370 l~~epL~~ll~~~~~~~P 387 (623)
.+++.|.+=|+++.++.|
T Consensus 407 ~d~~kl~~~L~~L~~ed~ 424 (529)
T 2h5e_A 407 LKQKQLLKGLVQLSEEGA 424 (529)
T ss_dssp ---CTHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhhCC
Confidence 678889999998888777
No 87
>4h2g_A 5'-nucleotidase; dimer, hydrolase, phosphatase, extracellular; HET: ADN; 1.55A {Homo sapiens} PDB: 4h2f_A* 4h1y_P* 4h2i_A* 4h1s_A* 4h2b_A*
Probab=22.27 E-value=3.3e+02 Score=29.58 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=32.9
Q ss_pred CCeEEEEEeCCCcCCCC---------------CCchHHHHHHHHHHccCCc-EEEEeCcccCCC
Q 006976 353 EEISMIIAAGPFTTTDN---------------LYFEPLKELISYAKRKQPQ-LLILLGPFVDSE 400 (623)
Q Consensus 353 ~~l~I~vAsGPft~~d~---------------l~~epL~~ll~~~~~~~Pd-vlIL~GPFvD~~ 400 (623)
.+++|+..+.-+..-.. -.+..|..+++.++...|+ +++..|.+++..
T Consensus 24 ~~l~Il~~nD~Hg~~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~~~l~l~~GD~~~g~ 87 (546)
T 4h2g_A 24 WELTILHTNDVHSRLEQTSEDSSKCVDASRCMGGVARLFTKVQQIRRAEPNVLLLDAGDQYQGT 87 (546)
T ss_dssp EEEEEEEECCCTTCCSCBCTTSSBCSSGGGCBCCHHHHHHHHHHHHHHCSSEEEEECSCCSSSS
T ss_pred eEEEEEEecccccCCcccccccccccccccccCCHHHHHHHHHHHHhhCCCEEEEECCccCCCc
Confidence 45777777765422111 1357789999999888885 777789998865
No 88
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=21.64 E-value=1.8e+02 Score=31.99 Aligned_cols=104 Identities=18% Similarity=0.228 Sum_probs=55.3
Q ss_pred EEEEEEEEECCCCCCCCceEEEeeccCCCCCeEEEe------ecCCC-CcccccCCCEEEEEeec--CCCCeEEEeEecc
Q 006976 249 LFAVGMICCDGDGHLNDKSVLLQSSVEHSGGQRVRL------DLHKL-GEFSLFPGQVVGIEGSN--PSGHCLIASKLVD 319 (623)
Q Consensus 249 v~vvGrI~~d~egkLn~~sv~LE~s~~~~~G~rV~L------dls~l-~~~slFPGQIV~v~G~n--~~G~~f~V~ei~~ 319 (623)
.++++||++ |.|....-+.- ...|...++ ...+. .--.+.+|+|||+.|.. ..|+.+.-.+-
T Consensus 331 rla~~RV~s---G~l~~g~~v~~----~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GDTl~~~~~-- 401 (548)
T 3vqt_A 331 RMAFLRICS---GTFTRGMRLKH----HRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFTESKE-- 401 (548)
T ss_dssp CEEEEEEEE---SCEETTCEEEE----TTTTEEEECTTCEECCCSSCCSSCEECTTCEEEEECSSCCCTTCEEESSSS--
T ss_pred eEEEEEEec---ceecCCCEEEe----eccccccccchhhhhccccccccCEEecCCEEEecCCccCccCCEecCCCC--
Confidence 357888887 55544333321 122333332 11111 22378999999999974 36776653221
Q ss_pred CCCCCCCccccCCCchhhhhhhhccccccccCCCCeEEEEEeCCCcCCCCCCchHHHHHHHHHHccCCc
Q 006976 320 QIPLPVDAVVDVHPSMKQALDQEIHSTVVISRPEEISMIIAAGPFTTTDNLYFEPLKELISYAKRKQPQ 388 (623)
Q Consensus 320 ~~Pl~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~I~vAsGPft~~d~l~~epL~~ll~~~~~~~Pd 388 (623)
+.+++ . .+. ..|. +.+|--| .+.-+++.|.+.++++.++.|-
T Consensus 402 ~~~~~--~---i~~------------------~~P~-~~~av~p---~~~~d~~kl~~~L~~L~eed~~ 443 (548)
T 3vqt_A 402 VLKFV--G---IPN------------------FAPE-HFRRVRL---KNPLKAKQLQKGLEQLAEEGAV 443 (548)
T ss_dssp CCCBC--C---CEE------------------ECCS-EEEEEEE---SCGGGHHHHHHHHHHHHHTTSS
T ss_pred ccccC--C---CCC------------------CCCc-ceeeeee---CCchhHHHHHHHHHHhhhcCce
Confidence 11111 1 000 1221 2233323 4556789999999999888774
No 89
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=20.96 E-value=1.6e+02 Score=27.88 Aligned_cols=55 Identities=9% Similarity=-0.019 Sum_probs=38.3
Q ss_pred CCcEEEcCCCCcceEEEecCCCCCCccccceEEEEcCCcccc------------CCCCceEEEEEEcCCcccccceeee
Q 006976 556 IPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAK------------GEGSGTFAEIYYHGSPEMMNASIIS 622 (623)
Q Consensus 556 ~PDILIlPS~l~~F~k~v~~~~~~~~~~~~~~v~INPG~l~k------------~~~~Gtya~l~v~~~~~~~~a~~~~ 622 (623)
.+|+++.++.-.++....++ ..+++|||.... ......|+.+++.+. ++..++++
T Consensus 187 ~v~~vl~GH~H~~~~~~~~g----------~~~~~~pg~~~~~~~~~~~~~~~~~~~~~gy~i~~i~~~--~~~~~~~~ 253 (274)
T 3d03_A 187 SLTRIFCGHNHSLTMTQYRQ----------ALISTLPGTVHQVPYCHADTDPYYDLSPASCLMHRQVGE--QWVSYQHS 253 (274)
T ss_dssp TEEEEEECSSSSCEEEEETT----------EEEEECCCSSCBCCCCSSCCSCEEBCCCCEEEEEEEETT--EEEEEEEE
T ss_pred CceEEEeCCCCCchhheECC----------EEEEEcCCcceeeccCCCccccccccCCCceEEEEEeCC--cEEEEEEe
Confidence 47899999998777766532 368999998642 123468999999875 45555544
No 90
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3
Probab=20.92 E-value=48 Score=31.36 Aligned_cols=40 Identities=13% Similarity=0.098 Sum_probs=27.1
Q ss_pred CCcEEEcCCCCcceEEEecCCCCCCccccceEEEEcCCccccCCCCceEEEEEEc
Q 006976 556 IPDIIILPSDMKYFIKVLSLGGRNEGEEQKKCVCVNPGRLAKGEGSGTFAEIYYH 610 (623)
Q Consensus 556 ~PDILIlPS~l~~F~k~v~~~~~~~~~~~~~~v~INPG~l~k~~~~Gtya~l~v~ 610 (623)
-+|++|.++.-.++....+ ++++||||.+.. |.++-+.+.
T Consensus 178 ~~~~vv~GHth~~~~~~~~-----------~~~~in~Gs~~g----g~lt~~~l~ 217 (221)
T 1g5b_A 178 GADTFIFGHTPAVKPLKFA-----------NQMYIDTGAVFC----GNLTLIQVQ 217 (221)
T ss_dssp TSSEEEECSSCCSSCEEET-----------TEEECCCCHHHH----SCCCEEEEE
T ss_pred CCCEEEECCCCCccceeeC-----------CEEEEECCCCcC----CceEEEEec
Confidence 3678888888655555554 499999999863 455444443
No 91
>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A phosphatase, motor protein, structur protein, membrane protein; 1.70A {Plasmodium falciparum 3D7}
Probab=20.75 E-value=25 Score=36.48 Aligned_cols=64 Identities=14% Similarity=0.175 Sum_probs=39.9
Q ss_pred HHHHHHHHccCCcEEEEeCcccCCCCccccCCCccccHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCCC
Q 006976 376 KELISYAKRKQPQLLILLGPFVDSEHPQIKKGTTDSSFDEIFHLEILRRLQDYVEYMGSEVRAILVPSIRDANH 449 (623)
Q Consensus 376 ~~ll~~~~~~~PdvlIL~GPFvD~~h~~i~~g~~~~t~~~lF~~~il~~l~~~~~~~~~~~~VvlVPS~rD~~~ 449 (623)
..|.+.+++.+||.+|++|..++. .. . +.-+..+.+.|+. +...+. ...++.+..|++.+|...
T Consensus 24 ~~m~~~~~~~~pd~vl~~GD~~y~-G~--~-~~~d~~~~~~f~~-~~~~~~-----~~~~~P~~~vlGNHD~~~ 87 (342)
T 3tgh_A 24 KYFKQFIKNERVTFIVSPGSNFID-GV--K-GLNDPAWKNLYED-VYSEEK-----GDMYMPFFTVLGTRDWTG 87 (342)
T ss_dssp HHHHHHHHHTTCCEEEECSCSBTT-CC--C-STTCTHHHHHTTT-TSCCGG-----GTTCSEEEECCCHHHHTS
T ss_pred HHHHHHHhhcCCCEEEECCCcccC-CC--C-cCccHHHHHHHHH-Hhhhhh-----hhhCCCEEEeCCCCccCC
Confidence 444556677999999999999886 32 1 1113345555543 222110 124678999999999764
No 92
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0
Probab=20.67 E-value=94 Score=29.84 Aligned_cols=56 Identities=9% Similarity=-0.002 Sum_probs=34.2
Q ss_pred CCcEEEcCCCCcceEEEecCCCCCCcc----------ccceEEEEcCCccccCC---CCceEEEEEEcC
Q 006976 556 IPDIIILPSDMKYFIKVLSLGGRNEGE----------EQKKCVCVNPGRLAKGE---GSGTFAEIYYHG 611 (623)
Q Consensus 556 ~PDILIlPS~l~~F~k~v~~~~~~~~~----------~~~~~v~INPG~l~k~~---~~Gtya~l~v~~ 611 (623)
.+|++|.++.-.+|+.....++..... -..+..+||||+....+ ...+|+.+.+..
T Consensus 142 ~~~l~i~GHtH~p~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ivNpGSVG~Prdg~p~A~Y~i~d~~~ 210 (246)
T 3rqz_A 142 DTPLCFVGHTHVPLYIREDEALSNVAPHHPNDGEVLDVSSGRYIINPGAVGQPRDGDPRASYAIFEPDA 210 (246)
T ss_dssp CSSEEECCSSSSEEEEEHHHHHTTCCCBCCCTTCEEECSSSCEEEEECCSSCCCSSCCSEEEEEEEGGG
T ss_pred CCCEEEECCcCcccEEEecccccccccccccccceeecCCCeEEEECCccCCCCCcCCcceEEEEECCC
Confidence 468888888888887663110000000 01248999999997543 345899888654
Done!