Query 006977
Match_columns 623
No_of_seqs 343 out of 1561
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 17:11:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006977.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006977hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1471 Phosphatidylinositol t 100.0 1.4E-44 3.1E-49 380.6 23.5 278 70-350 6-288 (317)
2 KOG1470 Phosphatidylinositol t 100.0 8.7E-39 1.9E-43 331.3 19.9 226 86-338 27-253 (324)
3 PF00650 CRAL_TRIO: CRAL/TRIO 100.0 1E-29 2.2E-34 239.7 9.4 157 155-321 2-159 (159)
4 smart00516 SEC14 Domain in hom 99.9 2.6E-27 5.6E-32 223.0 15.1 154 156-323 5-158 (158)
5 cd00170 SEC14 Sec14p-like lipi 99.9 3.3E-24 7.2E-29 198.9 15.0 145 164-321 13-157 (157)
6 PF13716 CRAL_TRIO_2: Divergen 99.4 1.2E-13 2.7E-18 130.0 3.3 139 164-325 6-147 (149)
7 PF03765 CRAL_TRIO_N: CRAL/TRI 98.6 4.5E-08 9.7E-13 77.4 5.2 47 85-132 1-55 (55)
8 KOG4406 CDC42 Rho GTPase-activ 98.1 9.8E-06 2.1E-10 87.0 10.0 127 167-314 89-215 (467)
9 COG4064 MtrG Tetrahydromethano 83.4 1.3 2.8E-05 36.7 3.2 25 535-559 11-35 (75)
10 PRK01026 tetrahydromethanopter 81.1 1.8 3.9E-05 36.7 3.4 25 535-559 11-35 (77)
11 TIGR01149 mtrG N5-methyltetrah 80.6 1.9 4.2E-05 35.8 3.2 25 535-559 8-32 (70)
12 PF04210 MtrG: Tetrahydrometha 74.7 3 6.5E-05 34.7 2.8 25 535-559 8-32 (70)
13 PF14555 UBA_4: UBA-like domai 65.6 20 0.00043 26.8 5.4 36 86-130 2-37 (43)
14 PF10805 DUF2730: Protein of u 65.1 68 0.0015 28.9 9.7 17 477-493 9-25 (106)
15 PF02845 CUE: CUE domain; Int 53.2 43 0.00093 24.7 5.3 38 86-131 3-40 (42)
16 KOG1838 Alpha/beta hydrolase [ 50.3 73 0.0016 35.5 8.7 89 168-281 121-215 (409)
17 KOG1962 B-cell receptor-associ 47.1 91 0.002 31.8 8.2 73 539-611 114-191 (216)
18 smart00546 CUE Domain that may 46.5 52 0.0011 24.3 4.9 38 86-131 4-41 (43)
19 PHA01750 hypothetical protein 43.2 1.2E+02 0.0025 25.3 6.6 42 571-614 30-71 (75)
20 KOG0612 Rho-associated, coiled 42.7 84 0.0018 39.4 8.2 46 541-594 443-491 (1317)
21 TIGR02132 phaR_Bmeg polyhydrox 42.3 91 0.002 30.8 7.0 74 537-611 70-154 (189)
22 TIGR03752 conj_TIGR03752 integ 41.3 1.5E+02 0.0033 33.6 9.5 73 536-608 56-135 (472)
23 TIGR03185 DNA_S_dndD DNA sulfu 40.7 1.2E+02 0.0026 35.8 9.3 64 539-604 391-454 (650)
24 PF05377 FlaC_arch: Flagella a 37.1 1E+02 0.0022 24.8 5.3 35 579-613 1-35 (55)
25 PF10368 YkyA: Putative cell-w 36.4 1.5E+02 0.0032 29.9 7.8 78 538-615 31-112 (204)
26 PF08317 Spc7: Spc7 kinetochor 36.2 2E+02 0.0042 31.0 9.3 75 540-614 178-252 (325)
27 COG1340 Uncharacterized archae 35.1 2.9E+02 0.0063 29.6 10.0 65 541-614 109-173 (294)
28 PRK09039 hypothetical protein; 34.3 3.3E+02 0.0072 29.6 10.7 20 479-498 28-47 (343)
29 PF12718 Tropomyosin_1: Tropom 33.2 1.7E+02 0.0038 27.7 7.4 69 538-606 34-108 (143)
30 PF01496 V_ATPase_I: V-type AT 33.1 1.7E+02 0.0037 35.2 9.0 64 549-612 204-271 (759)
31 KOG3313 Molecular chaperone Pr 33.0 2E+02 0.0044 28.5 7.7 62 553-614 22-86 (187)
32 PRK00117 recX recombination re 32.3 59 0.0013 30.8 4.1 97 27-132 53-153 (157)
33 PF10212 TTKRSYEDQ: Predicted 31.7 2.5E+02 0.0054 32.3 9.3 35 570-604 461-509 (518)
34 PF11221 Med21: Subunit 21 of 31.3 4E+02 0.0088 25.1 9.5 61 544-612 78-138 (144)
35 KOG0249 LAR-interacting protei 31.0 2.9E+02 0.0062 33.1 9.7 75 537-611 171-249 (916)
36 PF13080 DUF3926: Protein of u 30.1 45 0.00098 25.2 2.2 22 588-612 13-34 (44)
37 PF14712 Snapin_Pallidin: Snap 29.2 1.3E+02 0.0029 25.8 5.4 31 582-612 11-41 (92)
38 PF05276 SH3BP5: SH3 domain-bi 28.8 3.9E+02 0.0084 27.8 9.5 53 546-600 98-150 (239)
39 PRK09261 phospho-2-dehydro-3-d 27.5 3.4E+02 0.0075 29.7 9.3 67 159-236 204-271 (349)
40 PHA00687 hypothetical protein 27.4 1.3E+02 0.0029 23.1 4.3 30 563-592 9-48 (56)
41 PF11802 CENP-K: Centromere-as 27.3 4E+02 0.0087 28.1 9.3 38 539-576 52-89 (268)
42 PF13234 rRNA_proc-arch: rRNA- 27.3 2.2E+02 0.0047 29.5 7.6 70 541-613 182-263 (268)
43 PF04740 LXG: LXG domain of WX 27.1 2.7E+02 0.0058 27.3 7.9 114 468-601 47-161 (204)
44 PRK12822 phospho-2-dehydro-3-d 27.0 1.9E+02 0.0042 31.7 7.2 69 158-237 203-271 (356)
45 PF10158 LOH1CR12: Tumour supp 26.4 2.2E+02 0.0048 26.7 6.7 63 542-605 52-114 (131)
46 PF03961 DUF342: Protein of un 26.2 3.1E+02 0.0067 30.8 9.1 55 540-594 342-398 (451)
47 TIGR02132 phaR_Bmeg polyhydrox 26.1 2.1E+02 0.0045 28.5 6.5 12 589-600 142-153 (189)
48 PRK10884 SH3 domain-containing 25.4 5.1E+02 0.011 26.2 9.5 71 545-615 92-169 (206)
49 TIGR00034 aroFGH phospho-2-deh 25.2 1.4E+02 0.0029 32.7 5.7 68 159-237 199-266 (344)
50 PLN03214 probable enoyl-CoA hy 25.0 2.3E+02 0.0049 29.7 7.3 21 597-617 250-270 (278)
51 PHA02562 46 endonuclease subun 24.7 2.1E+02 0.0045 32.7 7.6 74 538-612 298-371 (562)
52 PRK12756 phospho-2-dehydro-3-d 24.4 2.2E+02 0.0048 31.2 7.0 69 158-237 202-270 (348)
53 PF04880 NUDE_C: NUDE protein, 24.4 95 0.0021 30.4 3.9 32 568-600 4-35 (166)
54 PF01102 Glycophorin_A: Glycop 24.2 1E+02 0.0022 28.8 3.9 32 471-502 64-95 (122)
55 PF05276 SH3BP5: SH3 domain-bi 24.1 4E+02 0.0088 27.6 8.7 74 541-614 144-227 (239)
56 PRK14137 recX recombination re 24.1 1.7E+02 0.0036 29.4 5.7 27 109-135 156-182 (195)
57 PRK06569 F0F1 ATP synthase sub 23.6 1.1E+02 0.0023 29.8 4.1 95 473-589 10-106 (155)
58 PF15294 Leu_zip: Leucine zipp 23.4 2.1E+02 0.0045 30.4 6.5 61 546-617 190-250 (278)
59 PF05529 Bap31: B-cell recepto 23.4 2.3E+02 0.0051 27.8 6.7 62 540-602 119-184 (192)
60 PF15175 SPATA24: Spermatogene 22.6 2.2E+02 0.0048 27.4 5.8 58 538-599 2-59 (153)
61 PF05335 DUF745: Protein of un 22.4 1.4E+02 0.003 29.9 4.8 31 567-597 140-177 (188)
62 PRK11613 folP dihydropteroate 22.4 9.5E+02 0.021 25.5 12.2 44 220-264 174-217 (282)
63 COG1842 PspA Phage shock prote 21.9 8.5E+02 0.018 25.0 10.5 50 539-594 59-108 (225)
64 PF12297 EVC2_like: Ellis van 21.2 4.2E+02 0.0091 29.8 8.5 21 473-493 68-88 (429)
65 PF14282 FlxA: FlxA-like prote 21.0 4E+02 0.0087 23.9 7.1 52 536-588 16-68 (106)
66 PRK14136 recX recombination re 20.9 1.2E+02 0.0026 32.6 4.2 24 108-131 278-301 (309)
67 PF09789 DUF2353: Uncharacteri 20.9 3.9E+02 0.0084 29.0 8.0 61 536-596 23-97 (319)
68 smart00787 Spc7 Spc7 kinetocho 20.8 5E+02 0.011 28.0 8.9 74 540-613 173-260 (312)
69 PF11068 YlqD: YlqD protein; 20.5 4.9E+02 0.011 24.5 7.8 50 566-615 15-72 (131)
70 PF15027 DUF4525: Domain of un 20.5 96 0.0021 29.1 2.9 23 537-559 84-106 (138)
71 PF06103 DUF948: Bacterial pro 20.4 4.3E+02 0.0093 22.5 6.9 43 572-614 27-69 (90)
No 1
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=1.4e-44 Score=380.56 Aligned_cols=278 Identities=45% Similarity=0.746 Sum_probs=247.9
Q ss_pred ccccccccCCCC--HHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCccccc
Q 006977 70 RVSSVSIEDVRD--VEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMED 147 (623)
Q Consensus 70 ~v~s~~ied~~d--~~E~~aV~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~l~WRke~g~d~i~~d 147 (623)
.++.+..+++.+ +.+.+.++++| |+..+++++...+|+++||||||||+||+++|+++|.+++.||++++.+.+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~i~~lr-~~~~~~~l~~~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~ 84 (317)
T KOG1471|consen 6 MLAKVAKEELNEITESEEAVIAQLR-WLLQKPHLPNKYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFED 84 (317)
T ss_pred ccccccccccCCCcHHHHHHHHHHH-HHhhccCCCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhhc
Confidence 444445544443 56677777777 888899999755555799999999999999999999999999999999999876
Q ss_pred cchHHHHHHHhccCcccccCCCCCCcEEEEeccccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeE
Q 006977 148 FEFKEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSST 227 (623)
Q Consensus 148 ~~~~el~~vlk~~p~~~~G~Dk~GRPV~i~rlg~~d~~kl~~~~t~~~~ik~~v~~~E~~l~~~~pacsi~~~~~i~~~t 227 (623)
.....++.+++|++++|+|++|+||++.+.|..+...++..+...++.++++..+|+.+..+++.|....+++++|++
T Consensus 85 --~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~ 162 (317)
T KOG1471|consen 85 --FEEDDELLKYYPQGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIV 162 (317)
T ss_pred --cccchhhhhhccccccccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeE
Confidence 233444566899999999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEEeCCCCCCCCCChhHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhcceEEeCCCchhHHHh
Q 006977 228 SILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLE 307 (623)
Q Consensus 228 iIiD~~G~sl~~~~~~~~~lik~i~kilq~~YPErL~rI~IVNaP~~f~~lw~iVK~FLdpkTr~KI~~lg~~~~~~L~e 307 (623)
+|+|++|+++.++....+.+++.++.++|+|||++++++||||+|++|+++|++|+|||+++|++||++++.++.+.|.+
T Consensus 163 ~I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~~~~~L~k 242 (317)
T KOG1471|consen 163 TIFDLKGVSLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSKDKESLLK 242 (317)
T ss_pred EEEECCCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCCchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999777778899999
Q ss_pred hcCCCCCccccCCCcCCC---CCCCCccCCCCCCCChHHHHHhhcC
Q 006977 308 IIDARELPEFLGGTCNCA---DQGGCLRSDKGPWQNPEILKMVLNG 350 (623)
Q Consensus 308 ~Id~~~LP~eyGGt~~~~---~~ggc~~~~~gpW~dp~i~k~~~~~ 350 (623)
+|++++||.+|||+|.+. ..++|..++.+||.++.+.+.....
T Consensus 243 ~i~~~~LP~~yGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (317)
T KOG1471|consen 243 YIPPEVLPEEYGGTCGDLDDPNGGGCDLSDEGPWKEPEIKKGKQEI 288 (317)
T ss_pred hCCHhhCccccCCCccccccccCCcCcccccccccccccccccccc
Confidence 999999999999999996 3577999999999998876644333
No 2
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=8.7e-39 Score=331.33 Aligned_cols=226 Identities=29% Similarity=0.456 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHhCCCCCC-CCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHhccCccc
Q 006977 86 QAVDAFRQSLIMDELLPE-RHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGY 164 (623)
Q Consensus 86 ~aV~~fR~~L~~~~~Lp~-~~dD~~~LLRFLrArkfDvekA~k~l~~~l~WRke~g~d~i~~d~~~~el~~vlk~~p~~~ 164 (623)
+.+...+..+......-. ..+| .|+|||||||+||+++|.+|+.++|.||+.+++..++ ...|+..-++.+.+++
T Consensus 27 ~k~~~~~~~~~pl~~~~~~~~~d-~cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~~~~~---~~~Ev~~e~~tGK~yi 102 (324)
T KOG1470|consen 27 DKINSVKKLLGPLTEKESKWCSD-ACLLRFLRARKWNVKKASKMLSNTLKWRRSFGPEEVI---EADEVAAELETGKAYI 102 (324)
T ss_pred HHHHHHHHhhcchhhhhHhcCcH-HHHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCCcccc---CHHHHHHHhhcCcEEE
Confidence 445555555521111111 2345 6999999999999999999999999999999997722 3455666778999999
Q ss_pred ccCCCCCCcEEEEeccccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCCCCCCChhH
Q 006977 165 HGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNA 244 (623)
Q Consensus 165 ~G~Dk~GRPV~i~rlg~~d~~kl~~~~t~~~~ik~~v~~~E~~l~~~~pacsi~~~~~i~~~tiIiD~~G~sl~~~~~~~ 244 (623)
+|.|++||||+|+++....++. .+.+++.+++||+||.++..+. ..++++++++|++|+|++|.+
T Consensus 103 ~G~D~~gRPVl~~~~~~~~qn~----~t~~~~~r~~Vy~mE~Ai~~lp--------~~qe~~~~L~D~~~fs~sN~d--- 167 (324)
T KOG1470|consen 103 LGHDKDGRPVLYLRPRPHRQNT----KTQKELERLLVYTLENAILFLP--------PGQEQFVWLFDLTGFSMSNPD--- 167 (324)
T ss_pred ecccCCCCeEEEEecCCCCCCC----CCHHHHHHHHHHHHHHHHHhCC--------CCcceEEEEEecccCcccCCC---
Confidence 9999999999999666555544 5899999999999999998754 457889999999999999888
Q ss_pred HHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhcceEEeCCCchhHHHhhcCCCCCccccCCCcCC
Q 006977 245 RELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTCNC 324 (623)
Q Consensus 245 ~~lik~i~kilq~~YPErL~rI~IVNaP~~f~~lw~iVK~FLdpkTr~KI~~lg~~~~~~L~e~Id~~~LP~eyGGt~~~ 324 (623)
+...+.+++++|+||||||+..+|+|+||+|..+|++++|||||+|++||.|+.+. ..|.+|||+++||..|||+..+
T Consensus 168 ~~~~k~~~~~lq~hYPErLg~a~l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~~--~~l~~~~d~~~l~s~~GG~~~~ 245 (324)
T KOG1470|consen 168 IKFLKELLHILQDHYPERLGKALLVNAPWIFQPFWKIIKPFLDPKTASKVKFVEPK--DDLSEYFDESQLPSLFGGKLLF 245 (324)
T ss_pred cHHHHHHHHHHHHhChHHhhhhhhcCChHHHHHHHHHhhhccChhhhceeEEecCh--hHHHhhCCccccchhhCCCccc
Confidence 78999999999999999999999999999999999999999999999999999774 5599999999999999998888
Q ss_pred CCCCCCccCCCCCC
Q 006977 325 ADQGGCLRSDKGPW 338 (623)
Q Consensus 325 ~~~ggc~~~~~gpW 338 (623)
.+ .++.+|
T Consensus 246 ~y------~~e~~~ 253 (324)
T KOG1470|consen 246 EY------THEEYW 253 (324)
T ss_pred cc------CCcchh
Confidence 76 566688
No 3
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.96 E-value=1e-29 Score=239.67 Aligned_cols=157 Identities=37% Similarity=0.585 Sum_probs=130.8
Q ss_pred HHHhccCcccccCCCCCCcEEEEeccccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCC
Q 006977 155 EVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQG 234 (623)
Q Consensus 155 ~vlk~~p~~~~G~Dk~GRPV~i~rlg~~d~~kl~~~~t~~~~ik~~v~~~E~~l~~~~pacsi~~~~~i~~~tiIiD~~G 234 (623)
++.+.++.+++|+|++||||+|+++|++|+.+ .+.+++++++++.+|.+++...+ ..+++++++|+|++|
T Consensus 2 ~~~~~~~~~~~g~D~~gr~v~~~~~~~~~~~~----~~~~~~~~~~~~~~E~~~~~~~~------~~~~~~~~~iiD~~g 71 (159)
T PF00650_consen 2 EILKSGPFYLHGRDKDGRPVIYIRLGRFDPKK----FSPEDVIRFFVYLLERMLKRMPE------GGQVEGIVVIIDLSG 71 (159)
T ss_dssp HHHTTSCEEEEEE-TTS-EEEEEEGTT--HHT----S-HHHHHHHHHHHHHHHHHTHHH------TSHHH-EEEEEE-TT
T ss_pred HHHCCeeEEECCCCCCcCEEEEEEcccCCCCc----CCHHHHHHHHHHHHHHHHhhhcc------cccceeEEEEEeCCC
Confidence 36788999999999999999999999999986 56889999999999999865221 356889999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhcceEEeCC-CchhHHHhhcCCCC
Q 006977 235 VGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGN-KYQSKLLEIIDARE 313 (623)
Q Consensus 235 ~sl~~~~~~~~~lik~i~kilq~~YPErL~rI~IVNaP~~f~~lw~iVK~FLdpkTr~KI~~lg~-~~~~~L~e~Id~~~ 313 (623)
++++++.....++++.+++++|++||++++++||||+|++|+.+|+++++||+++|++||+++++ ++.+.|.++||+++
T Consensus 72 ~~~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~~ 151 (159)
T PF00650_consen 72 FSLSNFDWWPISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPEQ 151 (159)
T ss_dssp --HHHHHCHHHHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGGG
T ss_pred ceEeccccchhhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccHHHHHhhCCHhH
Confidence 99998875558999999999999999999999999999999999999999999999999999965 45578999999999
Q ss_pred CccccCCC
Q 006977 314 LPEFLGGT 321 (623)
Q Consensus 314 LP~eyGGt 321 (623)
||.+|||+
T Consensus 152 lP~~~GG~ 159 (159)
T PF00650_consen 152 LPVEYGGT 159 (159)
T ss_dssp SBGGGTSS
T ss_pred CchhcCCC
Confidence 99999996
No 4
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.95 E-value=2.6e-27 Score=223.01 Aligned_cols=154 Identities=40% Similarity=0.651 Sum_probs=139.5
Q ss_pred HHhccCcccccCCCCCCcEEEEeccccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCC
Q 006977 156 VLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGV 235 (623)
Q Consensus 156 vlk~~p~~~~G~Dk~GRPV~i~rlg~~d~~kl~~~~t~~~~ik~~v~~~E~~l~~~~pacsi~~~~~i~~~tiIiD~~G~ 235 (623)
...+.++++ |.|++||||+|+++++++++. .+.+++++++++.+|.++... ....+++++++|+|++|+
T Consensus 5 ~~~~~~~~~-g~D~~GrpV~~~~~~~~~~~~----~~~~~~~~~~~~~~e~~~~~~------~~~~~~~~~~~i~D~~~~ 73 (158)
T smart00516 5 GKAYIPGGR-GYDKDGRPVLIFRAGRFDLKS----VTLEELLRYLVYVLEKILQRE------KKTGGIEGFTVIFDLKGL 73 (158)
T ss_pred HHHhcCCCC-CCCCCcCEEEEEeccccccCc----CCHHHHHHHHHHHHHHHHHHH------hcCCCeeeEEEEEECCCC
Confidence 455677777 999999999999999998765 689999999999999988641 135678999999999999
Q ss_pred CCCCCChhHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhcceEEeCCCchhHHHhhcCCCCCc
Q 006977 236 GLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELP 315 (623)
Q Consensus 236 sl~~~~~~~~~lik~i~kilq~~YPErL~rI~IVNaP~~f~~lw~iVK~FLdpkTr~KI~~lg~~~~~~L~e~Id~~~LP 315 (623)
++++++ .++++.++.+++++||++++++||||+|++|+++|+++++|+++++++||+++++++.+.|.++||+++||
T Consensus 74 ~~~~~~---~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~L~~~i~~~~lP 150 (158)
T smart00516 74 SMSNPD---LSVLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYIDPEQLP 150 (158)
T ss_pred Cccccc---HHHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCCCCHHHHHhhCCHhhCc
Confidence 999865 78999999999999999999999999999999999999999999999999999987678999999999999
Q ss_pred cccCCCcC
Q 006977 316 EFLGGTCN 323 (623)
Q Consensus 316 ~eyGGt~~ 323 (623)
.+|||+|.
T Consensus 151 ~~~GG~~~ 158 (158)
T smart00516 151 EELGGTLD 158 (158)
T ss_pred HhhCCCCC
Confidence 99999974
No 5
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.92 E-value=3.3e-24 Score=198.94 Aligned_cols=145 Identities=39% Similarity=0.621 Sum_probs=128.9
Q ss_pred cccCCCCCCcEEEEeccccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCCCCCCChh
Q 006977 164 YHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKN 243 (623)
Q Consensus 164 ~~G~Dk~GRPV~i~rlg~~d~~kl~~~~t~~~~ik~~v~~~E~~l~~~~pacsi~~~~~i~~~tiIiD~~G~sl~~~~~~ 243 (623)
..|.|++||||+++++++.++... .+.+++++++++.+|..+.... ....++++|+|++|+++.++. .
T Consensus 13 ~~~~D~~gr~V~~~~~~~~~~~~~---~~~~~~~~~~~~~~e~~~~~~~--------~~~~~~~~i~D~~~~~~~~~~-~ 80 (157)
T cd00170 13 LGGRDKEGRPVLIIRAGNKDLSKS---LDSEELLRYLVYTLEKLLQEDD--------EQVEGFVVIIDLKGLSLSHLL-P 80 (157)
T ss_pred cCCCCCCcCEEEEEecCCcchhhc---CCHHHHHHHHHHHHHHHHhhhh--------hcccceEEEEECCCCChhccc-h
Confidence 345699999999999997666543 3448999999999999987532 223799999999999999987 6
Q ss_pred HHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhcceEEeCCCchhHHHhhcCCCCCccccCCC
Q 006977 244 ARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGT 321 (623)
Q Consensus 244 ~~~lik~i~kilq~~YPErL~rI~IVNaP~~f~~lw~iVK~FLdpkTr~KI~~lg~~~~~~L~e~Id~~~LP~eyGGt 321 (623)
..+.++.++++++++||++++++||||+|++|+.+|+++++|+++++++||++++++ .+.|.++||+++||.+|||+
T Consensus 81 ~~~~~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~-~~~L~~~i~~~~Lp~~~GG~ 157 (157)
T cd00170 81 DPSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSD-KEELLKYIDKEQLPEEYGGT 157 (157)
T ss_pred hHHHHHHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCC-HHHHHhhCChhhCcHhhCCC
Confidence 689999999999999999999999999999999999999999999999999999876 68999999999999999996
No 6
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.39 E-value=1.2e-13 Score=129.98 Aligned_cols=139 Identities=21% Similarity=0.351 Sum_probs=95.1
Q ss_pred cccCCCCCCcEEEEeccccCcchhhhcccHHHHHHHHHHHH-HHHHHhhChhhhHhhhCCCCCeEEEEeCCCCCCCCCCh
Q 006977 164 YHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGF-EKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSK 242 (623)
Q Consensus 164 ~~G~Dk~GRPV~i~rlg~~d~~kl~~~~t~~~~ik~~v~~~-E~~l~~~~pacsi~~~~~i~~~tiIiD~~G~sl~~~~~ 242 (623)
..|+|++||||+++...+. ++. .+.+.++.|++..+ +.+ ...++++|+|+.|++..+..
T Consensus 6 ~gG~d~~g~pV~~~~~~~~-~~~----~~~~~ll~yl~~~l~~~~--------------~~~~f~vVid~~~~~~~~~~- 65 (149)
T PF13716_consen 6 PGGRDREGRPVVVFIASRL-PSS----DDLERLLLYLLSTLSEEV--------------VDKPFSVVIDHTGFSRSSEP- 65 (149)
T ss_dssp EEEEBTTS-EEEEEEGGG--C-T----THHHHHHHHHHHHH-TTT--------------TTS-EEEEEE-TT--GGG---
T ss_pred ecccCCCcCEEEEEECCcC-cch----hhHHHHHHHHHHhhhHHh--------------cCCCEEEEEEcCCCccccCC-
Confidence 3589999999999998777 432 35667777766555 221 12469999999999875432
Q ss_pred hHHHHHHHHHHHhccccccccceEEEEecChHHHHHH-HHHHhcCChhh-hcceEEeCCCchhHHHhhcCCCCCccccCC
Q 006977 243 NARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLW-NTVKSFLDPKT-TSKIHVLGNKYQSKLLEIIDARELPEFLGG 320 (623)
Q Consensus 243 ~~~~lik~i~kilq~~YPErL~rI~IVNaP~~f~~lw-~iVK~FLdpkT-r~KI~~lg~~~~~~L~e~Id~~~LP~eyGG 320 (623)
....++.+.+.+...|+..|+++||||+.++++.++ .+.+++++.+. ..||+++.+ .++|.++||+++||..+||
T Consensus 66 -~~~~l~~~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~s--l~~L~~~i~~~qL~~~lp~ 142 (149)
T PF13716_consen 66 -SLSWLKQLYKLLPRKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSS--LSELSKHIDPSQLPESLPG 142 (149)
T ss_dssp --HHHHHHTTTSS-HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESS--TCGGGGTSGGGG------H
T ss_pred -chHHHHHHHHHHHHHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECC--HHHHHhhCCHHHhcccCCC
Confidence 368899999999999999999999999999999999 55567778888 999999966 5899999999999999999
Q ss_pred CcCCC
Q 006977 321 TCNCA 325 (623)
Q Consensus 321 t~~~~ 325 (623)
+....
T Consensus 143 ~~~~d 147 (149)
T PF13716_consen 143 VLQYD 147 (149)
T ss_dssp HH---
T ss_pred EEecC
Confidence 87653
No 7
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=98.63 E-value=4.5e-08 Score=77.41 Aligned_cols=47 Identities=40% Similarity=0.591 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhC--------CCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006977 85 LQAVDAFRQSLIMD--------ELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (623)
Q Consensus 85 ~~aV~~fR~~L~~~--------~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~ 132 (623)
++++++|++.|... ......++| .+||||||||+||+++|.+||.+|
T Consensus 1 k~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d-~~llRFLRARkf~v~~A~~mL~~t 55 (55)
T PF03765_consen 1 KQKLKQLREHLSELDEKAPGLWDDEKEDHDD-NFLLRFLRARKFDVEKAFKMLKKT 55 (55)
T ss_dssp HHHHHHHHHHHHH--GGGTHHHTTHTSS-SH-HHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccchhcccccccCCCCH-HHHHHHHHHccCCHHHHHHHHHhC
Confidence 47899999999874 344556777 599999999999999999999875
No 8
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=98.14 E-value=9.8e-06 Score=87.00 Aligned_cols=127 Identities=22% Similarity=0.287 Sum_probs=101.4
Q ss_pred CCCCCCcEEEEeccccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCCCCCCChhHHH
Q 006977 167 VDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARE 246 (623)
Q Consensus 167 ~Dk~GRPV~i~rlg~~d~~kl~~~~t~~~~ik~~v~~~E~~l~~~~pacsi~~~~~i~~~tiIiD~~G~sl~~~~~~~~~ 246 (623)
.|++||+|+++...++...+- ..-.++++|.++.++..++. -.++++=-.|+...+.. .+.
T Consensus 89 ~D~~gr~iivv~a~rlp~~~e---ld~~~li~~~v~~id~~Ve~--------------DYt~vYfh~gl~s~nkp--~l~ 149 (467)
T KOG4406|consen 89 KDKQGRKIIVVYACRLPSSSE---LDDIRLISYLVYTIDKYVEN--------------DYTLVYFHHGLPSDNKP--YLQ 149 (467)
T ss_pred ccccCCeeEEEEEecCCchhh---hhhHHHHHHHHHHHHHHHhc--------------cceeeehhcCCcccccc--hHH
Confidence 699999999998888776541 12234999999999998864 25666666777665544 356
Q ss_pred HHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhcceEEeCCCchhHHHhhcCCCCC
Q 006977 247 LILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDAREL 314 (623)
Q Consensus 247 lik~i~kilq~~YPErL~rI~IVNaP~~f~~lw~iVK~FLdpkTr~KI~~lg~~~~~~L~e~Id~~~L 314 (623)
++....+-+-.+|=-.++.+|+|.+-|+.+++|+++|||++.|...||+.+ ++.++|.++|.-++|
T Consensus 150 ~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~--n~lseL~~~l~l~rL 215 (467)
T KOG4406|consen 150 LLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYF--NSLSELFEALKLNRL 215 (467)
T ss_pred HHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEe--ehHHHHHHhhhhhhh
Confidence 666666666678999999999999999999999999999999999999998 557999999886554
No 9
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=83.37 E-value=1.3 Score=36.71 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=22.2
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhc
Q 006977 535 LTEVDLLSSVTKRLSELEEKVDTLQ 559 (623)
Q Consensus 535 ~~~~~~~~~~~~r~~~lEekv~~L~ 559 (623)
++++|++..+.+||.++|+||+...
T Consensus 11 ~v~~~dfne~~kRLdeieekvef~~ 35 (75)
T COG4064 11 VVDPDDFNEIHKRLDEIEEKVEFVN 35 (75)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhhH
Confidence 5889999999999999999998643
No 10
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=81.07 E-value=1.8 Score=36.70 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=22.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhc
Q 006977 535 LTEVDLLSSVTKRLSELEEKVDTLQ 559 (623)
Q Consensus 535 ~~~~~~~~~~~~r~~~lEekv~~L~ 559 (623)
+++.+++..+++||.++||||+.-+
T Consensus 11 iv~~~d~~~i~~rLD~iEeKVEftn 35 (77)
T PRK01026 11 VVDPKDFKEIQKRLDEIEEKVEFTN 35 (77)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999998643
No 11
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=80.55 E-value=1.9 Score=35.77 Aligned_cols=25 Identities=44% Similarity=0.630 Sum_probs=22.1
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhc
Q 006977 535 LTEVDLLSSVTKRLSELEEKVDTLQ 559 (623)
Q Consensus 535 ~~~~~~~~~~~~r~~~lEekv~~L~ 559 (623)
+++.+++..+++||.++|+||+.-+
T Consensus 8 ~v~~~d~~~i~~rLd~iEeKVEf~~ 32 (70)
T TIGR01149 8 FVEPDEFNEVMKRLDEIEEKVEFVN 32 (70)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999998643
No 12
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=74.67 E-value=3 Score=34.69 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=21.9
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhc
Q 006977 535 LTEVDLLSSVTKRLSELEEKVDTLQ 559 (623)
Q Consensus 535 ~~~~~~~~~~~~r~~~lEekv~~L~ 559 (623)
+++.+++..+++||.++|+||+.-+
T Consensus 8 iv~~~~~~~i~~rLd~iEeKvEf~~ 32 (70)
T PF04210_consen 8 IVDPDDFNEIMKRLDEIEEKVEFTN 32 (70)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHhHH
Confidence 4788999999999999999997543
No 13
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=65.57 E-value=20 Score=26.78 Aligned_cols=36 Identities=17% Similarity=0.410 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 006977 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWA 130 (623)
Q Consensus 86 ~aV~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~ 130 (623)
+.|.+|..... .++ .....||.+++||++.|+..+-
T Consensus 2 e~i~~F~~iTg--------~~~-~~A~~~L~~~~wdle~Av~~y~ 37 (43)
T PF14555_consen 2 EKIAQFMSITG--------ADE-DVAIQYLEANNWDLEAAVNAYF 37 (43)
T ss_dssp HHHHHHHHHH---------SSH-HHHHHHHHHTTT-HHHHHHHHH
T ss_pred HHHHHHHHHHC--------cCH-HHHHHHHHHcCCCHHHHHHHHH
Confidence 56788887762 123 4789999999999999998764
No 14
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=65.10 E-value=68 Score=28.87 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006977 477 WAAVMAFFMMFVTLFRS 493 (623)
Q Consensus 477 ~~~~~~~~~~~~~~~~~ 493 (623)
|..+.|++..+++++..
T Consensus 9 w~ii~a~~~~~~~~~~~ 25 (106)
T PF10805_consen 9 WGIIWAVFGIAGGIFWL 25 (106)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 45566666666666663
No 15
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=53.18 E-value=43 Score=24.71 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 006977 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (623)
Q Consensus 86 ~aV~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~ 131 (623)
+.|+++++.. |. .+. ..+..-|.++++|++.|+.+|-+
T Consensus 3 ~~v~~L~~mF------P~-~~~-~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 3 EMVQQLQEMF------PD-LDR-EVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHHHS------SS-S-H-HHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHC------CC-CCH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 4566676665 32 333 47889999999999999998864
No 16
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=50.33 E-value=73 Score=35.54 Aligned_cols=89 Identities=17% Similarity=0.278 Sum_probs=65.3
Q ss_pred CCCCCcEEEEeccccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCCCCCCChh----
Q 006977 168 DKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKN---- 243 (623)
Q Consensus 168 Dk~GRPV~i~rlg~~d~~kl~~~~t~~~~ik~~v~~~E~~l~~~~pacsi~~~~~i~~~tiIiD~~G~sl~~~~~~---- 243 (623)
|.+..|++++-+|.-. .+.+.|+++++....+- .--++|++-.|++-..+..+
T Consensus 121 ~~~~~P~vvilpGltg-------~S~~~YVr~lv~~a~~~----------------G~r~VVfN~RG~~g~~LtTpr~f~ 177 (409)
T KOG1838|consen 121 DDGTDPIVVILPGLTG-------GSHESYVRHLVHEAQRK----------------GYRVVVFNHRGLGGSKLTTPRLFT 177 (409)
T ss_pred CCCCCcEEEEecCCCC-------CChhHHHHHHHHHHHhC----------------CcEEEEECCCCCCCCccCCCceee
Confidence 3456799999999754 35678999987542221 13478889888765444321
Q ss_pred --HHHHHHHHHHHhccccccccceEEEEecChHHHHHHHH
Q 006977 244 --ARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNT 281 (623)
Q Consensus 244 --~~~lik~i~kilq~~YPErL~rI~IVNaP~~f~~lw~i 281 (623)
..+-++.+++.+...||.+ +++.+..+.+-.++||-
T Consensus 178 ag~t~Dl~~~v~~i~~~~P~a--~l~avG~S~Gg~iL~nY 215 (409)
T KOG1838|consen 178 AGWTEDLREVVNHIKKRYPQA--PLFAVGFSMGGNILTNY 215 (409)
T ss_pred cCCHHHHHHHHHHHHHhCCCC--ceEEEEecchHHHHHHH
Confidence 2467888899999999998 89999999999999883
No 17
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=47.08 E-value=91 Score=31.83 Aligned_cols=73 Identities=21% Similarity=0.185 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHHHHHH-----HHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006977 539 DLLSSVTKRLSELEEK-----VDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQ 611 (623)
Q Consensus 539 ~~~~~~~~r~~~lEek-----v~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~ 611 (623)
+.++..+.+|..|++- -+....++.+=+-.+|+=........+-||.||+++++.|+.+-.+=.+|.-+.|..
T Consensus 114 ~R~~~ll~~l~~l~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~ 191 (216)
T KOG1962|consen 114 RRLHTLLRELATLRANEKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGL 191 (216)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3466778888888871 233333334444445666777788899999999999999987655555555555443
No 18
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=46.47 E-value=52 Score=24.31 Aligned_cols=38 Identities=16% Similarity=0.338 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 006977 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (623)
Q Consensus 86 ~aV~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~ 131 (623)
+.++++++.. |. .++ ..+.+.|+++++|++.|++.|.+
T Consensus 4 ~~v~~L~~mF------P~-l~~-~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 4 EALHDLKDMF------PN-LDE-EVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred HHHHHHHHHC------CC-CCH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 4566666654 32 334 37889999999999999988753
No 19
>PHA01750 hypothetical protein
Probab=43.20 E-value=1.2e+02 Score=25.26 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006977 571 ELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEA 614 (623)
Q Consensus 571 e~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k~~ 614 (623)
.+|.+|+.-| +-+||.--++-++++-.||.+|-+-++..|++
T Consensus 30 q~lkdAvkeI--V~~ELdNL~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 30 QALKDAVKEI--VNSELDNLKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 5677777644 56778888888888889999988888776654
No 20
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=42.66 E-value=84 Score=39.39 Aligned_cols=46 Identities=30% Similarity=0.435 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCchhHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 006977 541 LSSVTKRLSELEEKVDTLQAKPSEMPYEKEEL---LHAAVCRVDALEAELIATKKAL 594 (623)
Q Consensus 541 ~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~---L~aa~~RvdaLE~eL~~TKKaL 594 (623)
+..-++.++.|++++.+++ |+|+| |+.++.+.+..|++|..+.+||
T Consensus 443 l~~~~~~~~~~~~~~~~~~--------~~~~~~keL~e~i~~lk~~~~el~~~q~~l 491 (1317)
T KOG0612|consen 443 LVNEMQEKEKLDEKCQAVA--------ELEEMDKELEETIEKLKSEESELQREQKAL 491 (1317)
T ss_pred hhhHHHHhhhHHHHHHHHh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566899999999999998 77887 8999999999999999977776
No 21
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=42.30 E-value=91 Score=30.84 Aligned_cols=74 Identities=23% Similarity=0.309 Sum_probs=41.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhc-----------CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006977 537 EVDLLSSVTKRLSELEEKVDTLQ-----------AKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLL 605 (623)
Q Consensus 537 ~~~~~~~~~~r~~~lEekv~~L~-----------~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ 605 (623)
+.+++..+-.|+-.||+||+.|. ..--.=|.+|+++ +.-=.||.+||.-+.+-=.+|+-----|.||-
T Consensus 70 Sr~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v-~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~ 148 (189)
T TIGR02132 70 TKEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDV-TKLKQDIKSLDKKLDKILELLEGQQKTQDELK 148 (189)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHH-HHHHHHHHHHHHHHHHHHHHHhcCccchhHHH
Confidence 45566666666666666665543 2222456666663 55556777777776665555553333344444
Q ss_pred HHHHHH
Q 006977 606 AYIDRQ 611 (623)
Q Consensus 606 ayie~~ 611 (623)
+.|.++
T Consensus 149 ~~~~~~ 154 (189)
T TIGR02132 149 ETIQKQ 154 (189)
T ss_pred HHHHHH
Confidence 444433
No 22
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=41.29 E-value=1.5e+02 Score=33.61 Aligned_cols=73 Identities=19% Similarity=0.288 Sum_probs=50.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHH--HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006977 536 TEVDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLH--AAV-----CRVDALEAELIATKKALHEALMRQEDLLAYI 608 (623)
Q Consensus 536 ~~~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~--aa~-----~RvdaLE~eL~~TKKaL~~al~kQ~El~ayi 608 (623)
+..|.+..++-++.+|+.++..|...-...=.|.|+|-+ .++ .+|++-..||......|.+...+...++.-+
T Consensus 56 TP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 56 TPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999999999998876666666666643 111 2344555677777777766666555555554
No 23
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=40.74 E-value=1.2e+02 Score=35.77 Aligned_cols=64 Identities=30% Similarity=0.394 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006977 539 DLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDL 604 (623)
Q Consensus 539 ~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El 604 (623)
..+..+.+++.+||+..+.|..|=...|.+ +-+..-..+++.++.+|.+.+..+.....+-+++
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~--e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~ 454 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSE--EQIAQLLEELGEAQNELFRSEAEIEELLRQLETL 454 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999998887764 2444555555555555555555544443333333
No 24
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=37.13 E-value=1e+02 Score=24.78 Aligned_cols=35 Identities=26% Similarity=0.444 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006977 579 RVDALEAELIATKKALHEALMRQEDLLAYIDRQEE 613 (623)
Q Consensus 579 RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k~ 613 (623)
||+.||.+|.+-+-.+...=...++|-+.||+.++
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEE 35 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444433333333444444444443
No 25
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=36.39 E-value=1.5e+02 Score=29.94 Aligned_cols=78 Identities=29% Similarity=0.328 Sum_probs=55.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006977 538 VDLLSSVTKRLSELEEKVDTLQAKPSEMP----YEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEE 613 (623)
Q Consensus 538 ~~~~~~~~~r~~~lEekv~~L~~KP~~mP----~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k~ 613 (623)
+..+....+-|.+||++...|-.+=-+.. .+=......|+.-|+.=|..|.+-|++|..+--....+-.||++-+.
T Consensus 31 Ek~~~~~~k~L~~lE~~~q~lY~~ii~~~~~d~~~v~~~~~~a~~nv~~R~k~l~~Ek~ai~~a~~e~~~~~~~i~ki~d 110 (204)
T PF10368_consen 31 EKPFKEQQKKLNELEKKEQELYEQIIQLGKDDNDEVKKLSDEALKNVDEREKELKKEKEAIEKAKEEFKKAKKYIDKIED 110 (204)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTTGG---G-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34678889999999999999988853333 44567888999999999999999999999999999989999987764
Q ss_pred hh
Q 006977 614 AK 615 (623)
Q Consensus 614 ~k 615 (623)
.+
T Consensus 111 ~~ 112 (204)
T PF10368_consen 111 EK 112 (204)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 26
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=36.21 E-value=2e+02 Score=31.00 Aligned_cols=75 Identities=31% Similarity=0.336 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006977 540 LLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEA 614 (623)
Q Consensus 540 ~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k~~ 614 (623)
.+-.+..|.+.|++.+..|...+.++=..--+-|+++=.++.+++.++.+-|+-|.+.=.+=.++-+-|+..+..
T Consensus 178 ~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~ 252 (325)
T PF08317_consen 178 LLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQ 252 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566778888999998888887765222244566666777777777666666655544444555555544433
No 27
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=35.10 E-value=2.9e+02 Score=29.55 Aligned_cols=65 Identities=32% Similarity=0.385 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006977 541 LSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEA 614 (623)
Q Consensus 541 ~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k~~ 614 (623)
+.+.=+.+.+||.+..+. ..|+++|.=| |.+|.-|+.+|+..+|++....--| ||.+=|+..+.+
T Consensus 109 ~~~ler~i~~Le~~~~T~-----~L~~e~E~~l---vq~I~~L~k~le~~~k~~e~~~~~~-el~aei~~lk~~ 173 (294)
T COG1340 109 IKSLEREIERLEKKQQTS-----VLTPEEEREL---VQKIKELRKELEDAKKALEENEKLK-ELKAEIDELKKK 173 (294)
T ss_pred HHHHHHHHHHHHHHHHhc-----CCChHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 466678899999998874 4688888766 6677779999999999999988775 566666666543
No 28
>PRK09039 hypothetical protein; Validated
Probab=34.27 E-value=3.3e+02 Score=29.60 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 006977 479 AVMAFFMMFVTLFRSVAYRV 498 (623)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~ 498 (623)
.|+.||+.||.+.-+|.+.-
T Consensus 28 ~~~~f~l~~f~~~q~fLs~~ 47 (343)
T PRK09039 28 LVIMFLLTVFVVAQFFLSRE 47 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34557778887777776553
No 29
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=33.20 E-value=1.7e+02 Score=27.73 Aligned_cols=69 Identities=26% Similarity=0.288 Sum_probs=47.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCC---chhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006977 538 VDLLSSVTKRLSELEEKVDTLQAKPSEM---PYEKEELL---HAAVCRVDALEAELIATKKALHEALMRQEDLLA 606 (623)
Q Consensus 538 ~~~~~~~~~r~~~lEekv~~L~~KP~~m---P~EKEe~L---~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~a 606 (623)
..++.++-++++.||..|..+..+=.+. ..+.+... -+.-+||..||.||..+-+.|-+|..|=.+.-.
T Consensus 34 E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~ 108 (143)
T PF12718_consen 34 EQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADV 108 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888888777776553322 22333322 135579999999999999999999877665533
No 30
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=33.09 E-value=1.7e+02 Score=35.21 Aligned_cols=64 Identities=19% Similarity=0.311 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCCCCCCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 006977 549 SELEEKVDTLQAKPSEMPYE---KEELLHAAVCRVDALEAELIATKKALHEALMRQ-EDLLAYIDRQE 612 (623)
Q Consensus 549 ~~lEekv~~L~~KP~~mP~E---KEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ-~El~ayie~~k 612 (623)
.++++-+..++-..-.+|.. -++++++--.|++.++++++.|++.|.+.+.+- ++|.++-+..+
T Consensus 204 ~kv~~il~~~~f~~~~~p~~~~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~ 271 (759)
T PF01496_consen 204 EKVKKILRSFGFERYDLPEDEGTPEEAIKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYEYLR 271 (759)
T ss_dssp HHHHHHHHTTT--B----GGGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCceecCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677778888888777764 468999999999999999999999999876653 45555544444
No 31
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=32.99 E-value=2e+02 Score=28.48 Aligned_cols=62 Identities=18% Similarity=0.279 Sum_probs=53.4
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Q 006977 553 EKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHE---ALMRQEDLLAYIDRQEEA 614 (623)
Q Consensus 553 ekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~---al~kQ~El~ayie~~k~~ 614 (623)
|-|+...+||.--+.++..+|++..---+-+|.-|.++++.|.+ .+.+=.||+.++.+++.+
T Consensus 22 edV~s~~~qp~~~~~~~l~~~~E~~~kYkfme~~l~a~~~~l~~kIPd~entLeiv~~l~~~~~~ 86 (187)
T KOG3313|consen 22 EDVESYISQPELESLEALKKLQERYGKYKFMEASLLAQKRRLKTKIPDIENTLEIVQTLIAKKDE 86 (187)
T ss_pred HHHHHHHcCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhCccc
Confidence 45778889999999999999999999999999999999999986 456777888888776543
No 32
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=32.30 E-value=59 Score=30.81 Aligned_cols=97 Identities=18% Similarity=0.221 Sum_probs=50.7
Q ss_pred ccCCCChhhh--hhcccchhhHhhhccchhhhhhhcccCCCCCCCccccccccCCCCHHHHHHHHHHHHHHHhCCCCCCC
Q 006977 27 SDFENSEDER--RTRIGSLKKKALNASTKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQAVDAFRQSLIMDELLPER 104 (623)
Q Consensus 27 ~~~~~se~~~--~~~~~~~~~~~~~~s~~~~~s~~k~~~~r~~~~~v~s~~ied~~d~~E~~aV~~fR~~L~~~~~Lp~~ 104 (623)
.+...-+|++ ..-+.+. ...-....++++.|.+|| .+..+-.-.++++..+++..+...+...... . ..
T Consensus 53 ~~~~~ldD~~~a~~~~~~~-~~~~~g~~~I~~~L~~kG----i~~~~I~~~l~~~~~d~~e~a~~~~~k~~~~---~-~~ 123 (157)
T PRK00117 53 KEEGLLDDERFAESFVRSR-ARKGYGPRRIRQELRQKG----VDREIIEEALAELDIDWEELARELARKKFRR---P-LP 123 (157)
T ss_pred HHcCCCCHHHHHHHHHHHH-HhCCchHHHHHHHHHHcC----CCHHHHHHHHHHcCccHHHHHHHHHHHHcCC---C-CC
Confidence 3344566666 2223333 112234567889999998 4444333334444322232333333322211 1 11
Q ss_pred CC--cHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006977 105 HD--DYHMMLRFLKARKFDIDKAKHMWAEM 132 (623)
Q Consensus 105 ~d--D~~~LLRFLrArkfDvekA~k~l~~~ 132 (623)
.+ .-.-+.+||..++|+.+.+.+.+...
T Consensus 124 ~~~~~k~Ki~~~L~rkGF~~~~I~~~l~~~ 153 (157)
T PRK00117 124 DDAKEKAKLVRFLARRGFSMDVIQRVLRNA 153 (157)
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHhh
Confidence 11 12468999999999999887777654
No 33
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=31.67 E-value=2.5e+02 Score=32.34 Aligned_cols=35 Identities=31% Similarity=0.430 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHH
Q 006977 570 EELLHAAVCRVDALEAELIATKKA--------------LHEALMRQEDL 604 (623)
Q Consensus 570 Ee~L~aa~~RvdaLE~eL~~TKKa--------------L~~al~kQ~El 604 (623)
++=|+.+-.+|..||.||..|++- |.+.|++|.|=
T Consensus 461 ~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~ee 509 (518)
T PF10212_consen 461 EEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREE 509 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455889999999999999999984 55666666553
No 34
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=31.26 E-value=4e+02 Score=25.13 Aligned_cols=61 Identities=25% Similarity=0.388 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006977 544 VTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQE 612 (623)
Q Consensus 544 ~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k 612 (623)
++..-..+|.-++.| |.+..--|+- ..||+.||.|+...-+-|.+++.+=++|++-|+..-
T Consensus 78 Ii~kakqIe~LIdsL----Pg~~~see~Q----~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i 138 (144)
T PF11221_consen 78 IIRKAKQIEYLIDSL----PGIEVSEEEQ----LKRIKELEEENEEAEEELQEAVKEAEELLKQVQELI 138 (144)
T ss_dssp HHHHHHHHHHHHHHS----TTSSS-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC----CCCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555 4444333332 289999999999999999999999999999887653
No 35
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=31.04 E-value=2.9e+02 Score=33.09 Aligned_cols=75 Identities=24% Similarity=0.241 Sum_probs=44.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006977 537 EVDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEEL----LHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQ 611 (623)
Q Consensus 537 ~~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~----L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~ 611 (623)
+.+...+=++|.-.+|++=.+=+-.=+.--.|.+++ +++|+.++..|++||+.+||-|.++.---+-|...+|++
T Consensus 171 ~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~L 249 (916)
T KOG0249|consen 171 QLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDL 249 (916)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 344455556666655554332111111111133322 579999999999999999999988765545555555443
No 36
>PF13080 DUF3926: Protein of unknown function (DUF3926)
Probab=30.12 E-value=45 Score=25.16 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006977 588 IATKKALHEALMRQEDLLAYIDRQE 612 (623)
Q Consensus 588 ~~TKKaL~~al~kQ~El~ayie~~k 612 (623)
+.+|++|. +-||||.+|...++
T Consensus 13 QsAkqmln---ILQEELssy~~E~~ 34 (44)
T PF13080_consen 13 QSAKQMLN---ILQEELSSYPQEQP 34 (44)
T ss_pred HHHHHHHH---HHHHHHHhchhhcc
Confidence 46788886 67999999997665
No 37
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=29.19 E-value=1.3e+02 Score=25.79 Aligned_cols=31 Identities=39% Similarity=0.447 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006977 582 ALEAELIATKKALHEALMRQEDLLAYIDRQE 612 (623)
Q Consensus 582 aLE~eL~~TKKaL~~al~kQ~El~ayie~~k 612 (623)
.|+-.|...+..|.++...|.+|.+.|++..
T Consensus 11 ~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~ 41 (92)
T PF14712_consen 11 LLEPDLDRLDQQLQELRQSQEELLQQIDRLN 41 (92)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666777777777766666654
No 38
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=28.81 E-value=3.9e+02 Score=27.76 Aligned_cols=53 Identities=13% Similarity=0.081 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006977 546 KRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMR 600 (623)
Q Consensus 546 ~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~k 600 (623)
..+.-+|..+..-+. ..+=+..-||||.|..||..-|++-......-......
T Consensus 98 e~v~laEq~l~~~~~--~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~ 150 (239)
T PF05276_consen 98 EMVALAEQSLMSDSN--WTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARI 150 (239)
T ss_pred HHHHHHHHHHhcCCc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778887776444 56889999999999999998888887777665544333
No 39
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=27.46 E-value=3.4e+02 Score=29.75 Aligned_cols=67 Identities=16% Similarity=0.267 Sum_probs=44.2
Q ss_pred ccCcccccCCCCCCcEEEEeccccCcchhhhcc-cHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCC
Q 006977 159 YYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVT-TMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVG 236 (623)
Q Consensus 159 ~~p~~~~G~Dk~GRPV~i~rlg~~d~~kl~~~~-t~~~~ik~~v~~~E~~l~~~~pacsi~~~~~i~~~tiIiD~~G~s 236 (623)
..||.+.|.|++|++.++.-.|+-|..-.++-. +...|-+..+......+.. .. ...-+|||++..+
T Consensus 204 ~~~H~fl~~~~~G~~~~i~t~GN~~~hlilRGg~~~pNy~~~~i~~~~~~l~k----------~~-l~~~v~VD~SH~n 271 (349)
T PRK09261 204 SAPHHFLGITKDGRSAIVSTTGNPDCHVILRGGNKGPNYDAESVAEAKERLEK----------AG-LPPRIMIDCSHAN 271 (349)
T ss_pred hCCceeeecCCCCcEEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH----------cC-CCCCEEEECCCcc
Confidence 357888899999999999999988876555533 4445555544433333321 11 2568899998754
No 40
>PHA00687 hypothetical protein
Probab=27.42 E-value=1.3e+02 Score=23.09 Aligned_cols=30 Identities=33% Similarity=0.471 Sum_probs=21.8
Q ss_pred CCCchhHHHHHHHH----------HHHHHHHHHHHHHHHH
Q 006977 563 SEMPYEKEELLHAA----------VCRVDALEAELIATKK 592 (623)
Q Consensus 563 ~~mP~EKEe~L~aa----------~~RvdaLE~eL~~TKK 592 (623)
...|+|--.+|+.| +.||++||.--+..|+
T Consensus 9 ttlppeamrllqqaaqtpitradplarvkaiekatervkr 48 (56)
T PHA00687 9 TTLPPEAMRLLQQAAQTPITRADPLARVKAIEKATERVKR 48 (56)
T ss_pred ccCCHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHH
Confidence 34788888888766 6788888876665554
No 41
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=27.35 E-value=4e+02 Score=28.14 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 006977 539 DLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAA 576 (623)
Q Consensus 539 ~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa 576 (623)
..++-.|-|+..|+..++..+.+-+++.+.++++|-+.
T Consensus 52 ~ql~ll~~~~k~L~aE~~qwqk~~peii~~n~~VL~~l 89 (268)
T PF11802_consen 52 AQLSLLMMRVKCLTAELEQWQKRTPEIIPLNPEVLLTL 89 (268)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHH
Confidence 35677789999999999999999999999988887644
No 42
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=27.27 E-value=2.2e+02 Score=29.53 Aligned_cols=70 Identities=19% Similarity=0.161 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCchhH-----HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 006977 541 LSSVTKRLSELEEKVDTLQAKPSEMPYEK-----EELLHAAVCRVDALEAELIATK-------KALHEALMRQEDLLAYI 608 (623)
Q Consensus 541 ~~~~~~r~~~lEekv~~L~~KP~~mP~EK-----Ee~L~aa~~RvdaLE~eL~~TK-------KaL~~al~kQ~El~ayi 608 (623)
-..|++.|+||... ....++.+-|.| ..=+.+.+.|+..||..|..-. ..+++...+..+|.+-|
T Consensus 182 r~~~~~~l~el~~r---~~~giP~LDPi~DmkI~d~~~~e~~~k~~~Le~rl~~~~~~~~~~~~~~~~~~~~k~~l~~~i 258 (268)
T PF13234_consen 182 RKQVLKSLQELLKR---FPDGIPLLDPIKDMKIKDPEFVELVKKIEALEKRLSSHPLHKCPDFEEHYALYHEKAELQEEI 258 (268)
T ss_dssp HHHHHHHHHHHHHH---SSS--TCHHCHHHH----HHHHHHHHHHHHHHHHHHHSCHCCSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCCCCccChHHhCCCCcHHHHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 34556666665555 233344444433 3445566666666666665543 35566666666666666
Q ss_pred HHHHH
Q 006977 609 DRQEE 613 (623)
Q Consensus 609 e~~k~ 613 (623)
+..|+
T Consensus 259 ~~Lk~ 263 (268)
T PF13234_consen 259 KALKR 263 (268)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65553
No 43
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=27.13 E-value=2.7e+02 Score=27.33 Aligned_cols=114 Identities=18% Similarity=0.279 Sum_probs=68.3
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCcccccccccccccccCCCCCCCCcchhhhHH-HHHH
Q 006977 468 TPEGIRARIWAAVMAFFMMFVTLFRSVAYRVTHRIPETSTGHDLNISEVAVDANEKEEFRPPSPSPSLTEVDLLS-SVTK 546 (623)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 546 (623)
+...+..++-...+-++.++..++..+...+ +.+..-... .+ +..-+++..+.+. .+-+
T Consensus 47 a~dsiK~y~~~vh~pll~~~~~~~~~~~~~l-~~~~~~~~~---------vd----------~~~~a~i~e~~L~~el~~ 106 (204)
T PF04740_consen 47 AYDSIKNYFSEVHIPLLQGLILLLEEYQEAL-KFIKDFQSE---------VD----------SSSNAIIDEDFLESELKK 106 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHH---------Hc----------ccccccccHHHHHHHHHH
Confidence 4455567777778888888888888776666 332221111 00 1112347777777 6678
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006977 547 RLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQ 601 (623)
Q Consensus 547 r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ 601 (623)
.|.++++.+..+...-..+-.+=.+++.-..-..+.+...+...|+-|.+++.|=
T Consensus 107 ~l~~~~~~~~~~~~~~~~~~~~vsdiv~~~~~~~~~~~~~~~~~~~~l~~~lekL 161 (204)
T PF04740_consen 107 KLNQLKEQIEDLQDEINSILSSVSDIVSLPKPSSSSFIDSLEKAKKKLQETLEKL 161 (204)
T ss_pred HHHHHHHHHHHHHHHHhhhccchHHHHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888877665544444445533333334566666677777777666653
No 44
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=27.02 E-value=1.9e+02 Score=31.69 Aligned_cols=69 Identities=13% Similarity=0.021 Sum_probs=44.9
Q ss_pred hccCcccccCCCCCCcEEEEeccccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCCC
Q 006977 158 SYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGL 237 (623)
Q Consensus 158 k~~p~~~~G~Dk~GRPV~i~rlg~~d~~kl~~~~t~~~~ik~~v~~~E~~l~~~~pacsi~~~~~i~~~tiIiD~~G~sl 237 (623)
...||.+.|.|++|++.++...|+-|..-+++-.....|-...+......+.. ... .-.++|||+.-+-
T Consensus 203 a~~pH~Fl~i~~~G~~aiv~T~GN~~~HvILRGg~~PNY~~~~v~~a~~~l~~----------~~l-~~~vmVDcSH~NS 271 (356)
T PRK12822 203 ARSPHLVTVPGLTGCISTLLSDGNPHGHIILRGGREPNYGLSDVTKASKLLHD----------EGL-NHRLIIDCSHGNS 271 (356)
T ss_pred HcCCCeEEecCCCCcEEEEEcCCCCCceEEEeCCCCCCCCHHHHHHHHHHHHH----------CCC-CCcEEEECCCccC
Confidence 34688889999999999999999988877666433333433333333333321 122 2468999988754
No 45
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=26.45 E-value=2.2e+02 Score=26.74 Aligned_cols=63 Identities=16% Similarity=0.252 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006977 542 SSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLL 605 (623)
Q Consensus 542 ~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ 605 (623)
....+|+.+.|..+..|...-. -=..+=.-..+.+.+|+.|-..|.++...|++++.-=+.|-
T Consensus 52 ~~L~~riKevd~~~~~l~~~~~-erqk~~~k~ae~L~kv~els~~L~~~~~lL~~~v~~ie~LN 114 (131)
T PF10158_consen 52 NALAKRIKEVDQEIAKLLQQMV-ERQKRFAKFAEQLEKVNELSQQLSRCQSLLNQTVPSIETLN 114 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999988876533 11344455678899999999999999999999875544433
No 46
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=26.20 E-value=3.1e+02 Score=30.82 Aligned_cols=55 Identities=27% Similarity=0.393 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcC--CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006977 540 LLSSVTKRLSELEEKVDTLQA--KPSEMPYEKEELLHAAVCRVDALEAELIATKKAL 594 (623)
Q Consensus 540 ~~~~~~~r~~~lEekv~~L~~--KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL 594 (623)
++..+-++|.+|+..+..|.. +...+|+++.++++........|.++|.+.+.-|
T Consensus 342 ~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 398 (451)
T PF03961_consen 342 ELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEEL 398 (451)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666777777766665 4567889999888887777777777666555444
No 47
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=26.08 E-value=2.1e+02 Score=28.46 Aligned_cols=12 Identities=25% Similarity=0.484 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 006977 589 ATKKALHEALMR 600 (623)
Q Consensus 589 ~TKKaL~~al~k 600 (623)
+|.--|.+|.-|
T Consensus 142 ~~~~~~~~~~~~ 153 (189)
T TIGR02132 142 KTQDELKETIQK 153 (189)
T ss_pred cchhHHHHHHHH
Confidence 344445554443
No 48
>PRK10884 SH3 domain-containing protein; Provisional
Probab=25.44 E-value=5.1e+02 Score=26.21 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCC-------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006977 545 TKRLSELEEKVDTLQAKPSEM-------PYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAK 615 (623)
Q Consensus 545 ~~r~~~lEekv~~L~~KP~~m-------P~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k~~k 615 (623)
-.||.+||..+..|..|-.++ =.|..+-|.++=.-|..|+.|...-++-|..+-.+-++|-+-++.+++..
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444333332 22334444555555666677776666666666555555666666666543
No 49
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=25.25 E-value=1.4e+02 Score=32.75 Aligned_cols=68 Identities=18% Similarity=0.261 Sum_probs=43.4
Q ss_pred ccCcccccCCCCCCcEEEEeccccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCCC
Q 006977 159 YYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGL 237 (623)
Q Consensus 159 ~~p~~~~G~Dk~GRPV~i~rlg~~d~~kl~~~~t~~~~ik~~v~~~E~~l~~~~pacsi~~~~~i~~~tiIiD~~G~sl 237 (623)
..||++.|.|++|++.++...|+-|..-.++-.....|-+..+......+. ..+.. -.+|||++..+-
T Consensus 199 ~~~H~fl~~~~~G~~~~i~t~GN~~~hlilRGg~~pNy~~~di~~~~~~l~----------~~~lp-~~vmVD~SH~ns 266 (344)
T TIGR00034 199 AAPHYFLSVTKDGQMAIVQTSGNPDGHIILRGGKKPNYSAADVAAAKKQLE----------KAGLP-PHLMIDFSHGNS 266 (344)
T ss_pred hCCceeeecCCCCcEEEEECCCCCCEEEEecCCCCCCCCHHHHHHHHHHHH----------HcCCC-CeEEEeCCCccc
Confidence 578899999999999999999988766554433224444444433333322 12222 469999988643
No 50
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=25.01 E-value=2.3e+02 Score=29.72 Aligned_cols=21 Identities=14% Similarity=0.052 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 006977 597 ALMRQEDLLAYIDRQEEAKFR 617 (623)
Q Consensus 597 al~kQ~El~ayie~~k~~k~~ 617 (623)
+=.-|+-+.+++||+++||-+
T Consensus 250 s~d~~egi~aflek~~~~~~~ 270 (278)
T PLN03214 250 EPSIIKALGGVMERLSSGKEK 270 (278)
T ss_pred CHHHHHHHHHHHHHHhhcccc
Confidence 335588899999999988854
No 51
>PHA02562 46 endonuclease subunit; Provisional
Probab=24.69 E-value=2.1e+02 Score=32.67 Aligned_cols=74 Identities=16% Similarity=0.284 Sum_probs=54.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006977 538 VDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQE 612 (623)
Q Consensus 538 ~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k 612 (623)
.+.++.+...+.+|++++..|..+=.+.=...++ ++....|+..++.++...+..|++...+..+|-+=|++.+
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~-~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~ 371 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDE-FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQ 371 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888888887775544344444 7778899999999999999998887777666666665554
No 52
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=24.39 E-value=2.2e+02 Score=31.16 Aligned_cols=69 Identities=12% Similarity=0.131 Sum_probs=46.3
Q ss_pred hccCcccccCCCCCCcEEEEeccccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCCC
Q 006977 158 SYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGL 237 (623)
Q Consensus 158 k~~p~~~~G~Dk~GRPV~i~rlg~~d~~kl~~~~t~~~~ik~~v~~~E~~l~~~~pacsi~~~~~i~~~tiIiD~~G~sl 237 (623)
...||.+.|.|++|++.++...|+-|..-+++-.....|-...+......+. +.... -.++|||+.-+-
T Consensus 202 a~~~H~Fl~~~~~G~~aiv~T~GN~~~HvILRGg~~PNY~~~~v~~a~~~l~----------~~~l~-~~imVDcSH~NS 270 (348)
T PRK12756 202 ARASHMFLSPDKDGQMTIYQTSGNPYGHIIMRGGKKPNYHAEDIAAACDTLR----------EFDLP-EHLVVDFSHGNC 270 (348)
T ss_pred HhCCCeeEeeCCCCcEEEEEcCCCCCeEEEeeCCCCCCCCHHHHHHHHHHHH----------HCCCC-CcEEEECCCccc
Confidence 3468888999999999999999998887766644434444444444333332 12222 468999987754
No 53
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=24.39 E-value=95 Score=30.44 Aligned_cols=32 Identities=38% Similarity=0.417 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006977 568 EKEELLHAAVCRVDALEAELIATKKALHEALMR 600 (623)
Q Consensus 568 EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~k 600 (623)
|=|..||.|+.|-=-||.||+. |-.|.+.+-|
T Consensus 4 D~EsklN~AIERnalLE~ELdE-KE~L~~~~QR 35 (166)
T PF04880_consen 4 DFESKLNQAIERNALLESELDE-KENLREEVQR 35 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHCH--
T ss_pred HHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHH
Confidence 4578899999999999999977 8888877755
No 54
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=24.20 E-value=1e+02 Score=28.75 Aligned_cols=32 Identities=19% Similarity=0.093 Sum_probs=24.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhhcccC
Q 006977 471 GIRARIWAAVMAFFMMFVTLFRSVAYRVTHRI 502 (623)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (623)
+-..-|+.|+||-|+++..++-++.+|+.|+.
T Consensus 64 ~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 64 PAIIGIIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred cceeehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34688999999999999888888888877664
No 55
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=24.09 E-value=4e+02 Score=27.63 Aligned_cols=74 Identities=24% Similarity=0.311 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHhc---------CCC-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006977 541 LSSVTKRLSELEEKVDTLQ---------AKP-SEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDR 610 (623)
Q Consensus 541 ~~~~~~r~~~lEekv~~L~---------~KP-~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~ 610 (623)
...++.+...+|.+|..|. +|| -+|=..=+++|++.-.||..||+++..+|.--.+||-.-++|.+-|=.
T Consensus 144 H~~~~~~~~~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeIH~ 223 (239)
T PF05276_consen 144 HQRRARIYNEAEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEIHE 223 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666665 333 134445688999999999999999999999999999999999999866
Q ss_pred HHHh
Q 006977 611 QEEA 614 (623)
Q Consensus 611 ~k~~ 614 (623)
+...
T Consensus 224 ~R~~ 227 (239)
T PF05276_consen 224 QRRR 227 (239)
T ss_pred HHhh
Confidence 5544
No 56
>PRK14137 recX recombination regulator RecX; Provisional
Probab=24.08 E-value=1.7e+02 Score=29.39 Aligned_cols=27 Identities=19% Similarity=0.073 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006977 109 HMMLRFLKARKFDIDKAKHMWAEMLQW 135 (623)
Q Consensus 109 ~~LLRFLrArkfDvekA~k~l~~~l~W 135 (623)
.-+.+||..++|+.+.+...|.+.+.-
T Consensus 156 ~K~~~~L~rRGFs~~~I~~al~~~~~~ 182 (195)
T PRK14137 156 ASAYAFLARRGFSGAVIWPAIREVAAL 182 (195)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 468899999999999888888875443
No 57
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=23.60 E-value=1.1e+02 Score=29.79 Aligned_cols=95 Identities=15% Similarity=0.233 Sum_probs=52.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCcccccccccccccccCCCCCCCCcchhhh-HHHHHHHHHHH
Q 006977 473 RARIWAAVMAFFMMFVTLFRSVAYRVTHRIPETSTGHDLNISEVAVDANEKEEFRPPSPSPSLTEVDL-LSSVTKRLSEL 551 (623)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~l 551 (623)
..+++..+++|++-++-+-+.+..++++-+..+..... . . +.+++. -...-+-.++.
T Consensus 10 ~sqifw~iI~FlILy~ll~kf~~ppI~~iLe~R~~~I~-------~-~--------------L~~Ae~~k~eAe~l~a~y 67 (155)
T PRK06569 10 YSQIFWLIVTFGLLYIFVYKFITPKAEEIFNNRQTNIQ-------D-N--------------ITQADTLTIEVEKLNKYY 67 (155)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------h-H--------------HHHHHHHHHHHHHHHHHH
Confidence 57888888888888888888777777655543321100 0 0 001111 11112233445
Q ss_pred HHHHHHhcCCCCCCchh-HHHHHHHHHHHHHHHHHHHHH
Q 006977 552 EEKVDTLQAKPSEMPYE-KEELLHAAVCRVDALEAELIA 589 (623)
Q Consensus 552 Eekv~~L~~KP~~mP~E-KEe~L~aa~~RvdaLE~eL~~ 589 (623)
|+.+..-..+-.+|=.| .+++-.+|..+.+++|++|..
T Consensus 68 e~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~ 106 (155)
T PRK06569 68 NEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKN 106 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555556566 556666666666666666643
No 58
>PF15294 Leu_zip: Leucine zipper
Probab=23.43 E-value=2.1e+02 Score=30.39 Aligned_cols=61 Identities=36% Similarity=0.468 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006977 546 KRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 617 (623)
Q Consensus 546 ~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k~~k~~ 617 (623)
+-|.+||.++..|. .|=|.-+++.-.--++||.+|..| +|+-|..|++ ++..++-=++||+
T Consensus 190 q~l~dLE~k~a~lK-------~e~ek~~~d~~~~~k~L~e~L~~~---KhelL~~Qeq-L~~aekeLekKfq 250 (278)
T PF15294_consen 190 QDLSDLENKMAALK-------SELEKALQDKESQQKALEETLQSC---KHELLRVQEQ-LSLAEKELEKKFQ 250 (278)
T ss_pred cchhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcchh-hhcchhhHHHHhC
Confidence 55778899988884 344566777777889999999998 5677888888 6666665566655
No 59
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.37 E-value=2.3e+02 Score=27.78 Aligned_cols=62 Identities=31% Similarity=0.418 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006977 540 LLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELL----HAAVCRVDALEAELIATKKALHEALMRQE 602 (623)
Q Consensus 540 ~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L----~aa~~RvdaLE~eL~~TKKaL~~al~kQ~ 602 (623)
.+..++++|..+|+++..+..+...--..+++.+ ...-.-|+.|+.||.++++-+ ++|-+|-
T Consensus 119 r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~-~~LkkQ~ 184 (192)
T PF05529_consen 119 RVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEI-EALKKQS 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 4567889999999999998887654444444332 222233445555555533222 2444443
No 60
>PF15175 SPATA24: Spermatogenesis-associated protein 24
Probab=22.61 E-value=2.2e+02 Score=27.41 Aligned_cols=58 Identities=28% Similarity=0.353 Sum_probs=46.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006977 538 VDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALM 599 (623)
Q Consensus 538 ~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~ 599 (623)
..+|..+.+-|. ||+..+.-+|- +-.-=+|-|+=|+--|+-|=.+|++-|+|.+.|+.
T Consensus 2 keE~~~~~~~l~--~Ek~eHaKTK~--lLake~EKLqfAlgeieiL~kQl~rek~afe~a~~ 59 (153)
T PF15175_consen 2 KEEFEAVEKKLE--EEKAEHAKTKA--LLAKESEKLQFALGEIEILSKQLEREKLAFEKALG 59 (153)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHH--HHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888887 78888877762 23333578999999999999999999999988864
No 61
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=22.45 E-value=1.4e+02 Score=29.85 Aligned_cols=31 Identities=45% Similarity=0.447 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 006977 567 YEKEELLHAAVCRVDALEAE-------LIATKKALHEA 597 (623)
Q Consensus 567 ~EKEe~L~aa~~RvdaLE~e-------L~~TKKaL~~a 597 (623)
.||-.||.+|=.||+.|... |++||++-+-+
T Consensus 140 ~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~kA 177 (188)
T PF05335_consen 140 AEKTQLLEAAKRRVEELQRQLQAARADYEKTKKAAYKA 177 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999865 55666665543
No 62
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=22.36 E-value=9.5e+02 Score=25.48 Aligned_cols=44 Identities=23% Similarity=0.293 Sum_probs=30.8
Q ss_pred hCCCCCeEEEEeCCCCCCCCCChhHHHHHHHHHHHhccccccccc
Q 006977 220 KRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLH 264 (623)
Q Consensus 220 ~~~i~~~tiIiD~~G~sl~~~~~~~~~lik~i~kilq~~YPErL~ 264 (623)
...+...-+|+|- |+|+..-......+++.+-.+-.-.||-.++
T Consensus 174 ~~GI~~~~IilDP-GiGF~k~~~~n~~ll~~l~~l~~lg~Pilvg 217 (282)
T PRK11613 174 AAGIAKEKLLLDP-GFGFGKNLSHNYQLLARLAEFHHFNLPLLVG 217 (282)
T ss_pred HcCCChhhEEEeC-CCCcCCCHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 3456667899999 6777543345678888887776667885554
No 63
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=21.87 E-value=8.5e+02 Score=24.99 Aligned_cols=50 Identities=26% Similarity=0.249 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006977 539 DLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKAL 594 (623)
Q Consensus 539 ~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL 594 (623)
..+..+..+..++|++...--.+-. |++-..++.|+..||..+...+..+
T Consensus 59 ~~~~~~~~~~~k~e~~A~~Al~~g~------E~LAr~al~~~~~le~~~~~~~~~~ 108 (225)
T COG1842 59 RKLEEAQARAEKLEEKAELALQAGN------EDLAREALEEKQSLEDLAKALEAEL 108 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888876666644 9999999999998887766555543
No 64
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=21.18 E-value=4.2e+02 Score=29.77 Aligned_cols=21 Identities=10% Similarity=0.218 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 006977 473 RARIWAAVMAFFMMFVTLFRS 493 (623)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~ 493 (623)
.+.+++.++++|++++++|-.
T Consensus 68 agFfvaflvslVL~~l~~f~l 88 (429)
T PF12297_consen 68 AGFFVAFLVSLVLTWLCFFLL 88 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 366677777777776666653
No 65
>PF14282 FlxA: FlxA-like protein
Probab=20.97 E-value=4e+02 Score=23.90 Aligned_cols=52 Identities=15% Similarity=0.380 Sum_probs=38.8
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhcCCCCCCch-hHHHHHHHHHHHHHHHHHHHH
Q 006977 536 TEVDLLSSVTKRLSELEEKVDTLQAKPSEMPY-EKEELLHAAVCRVDALEAELI 588 (623)
Q Consensus 536 ~~~~~~~~~~~r~~~lEekv~~L~~KP~~mP~-EKEe~L~aa~~RvdaLE~eL~ 588 (623)
.....+..+-+++.+|.+++..|... ..|++ +|.+...+=-.-|..||+.|.
T Consensus 16 ~~~~~I~~L~~Qi~~Lq~ql~~l~~~-~~~~~e~k~~q~q~Lq~QI~~LqaQI~ 68 (106)
T PF14282_consen 16 SSDSQIEQLQKQIKQLQEQLQELSQD-SDLDAEQKQQQIQLLQAQIQQLQAQIA 68 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999995 23454 566555555557778888775
No 66
>PRK14136 recX recombination regulator RecX; Provisional
Probab=20.90 E-value=1.2e+02 Score=32.59 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=19.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Q 006977 108 YHMMLRFLKARKFDIDKAKHMWAE 131 (623)
Q Consensus 108 ~~~LLRFLrArkfDvekA~k~l~~ 131 (623)
..-+.|||..++|+.+...+.|..
T Consensus 278 k~K~iRfL~rRGFS~D~I~~vLk~ 301 (309)
T PRK14136 278 RAKQARFLAARGFSSATIVKLLKV 301 (309)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHh
Confidence 357799999999999987777753
No 67
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=20.86 E-value=3.9e+02 Score=29.00 Aligned_cols=61 Identities=26% Similarity=0.334 Sum_probs=45.1
Q ss_pred chhhhHHHHHH----HHHHHHHHHHHhc-----CCCCCCchhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006977 536 TEVDLLSSVTK----RLSELEEKVDTLQ-----AKPSEMPYEKE-----ELLHAAVCRVDALEAELIATKKALHE 596 (623)
Q Consensus 536 ~~~~~~~~~~~----r~~~lEekv~~L~-----~KP~~mP~EKE-----e~L~aa~~RvdaLE~eL~~TKKaL~~ 596 (623)
.+.|.|.-|+. |-+.|+.+..++. .--+.+|++++ .+|..+-.|.+.|..|+..-+.=|.|
T Consensus 23 ~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E 97 (319)
T PF09789_consen 23 SERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNE 97 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667665544 5557888888777 44445888877 88999999999999998776655444
No 68
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=20.82 E-value=5e+02 Score=27.99 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Q 006977 540 LLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDA--------------LEAELIATKKALHEALMRQEDLL 605 (623)
Q Consensus 540 ~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~Rvda--------------LE~eL~~TKKaL~~al~kQ~El~ 605 (623)
.+-.+.++.+.|+.++..|..-+.+|=.=.-+.|+.+=..+.. ++.+|..-+..+++.-.+..|+.
T Consensus 173 ~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~ 252 (312)
T smart00787 173 IKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELN 252 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778899999999999888887622112233333344444 44455555555555555555555
Q ss_pred HHHHHHHH
Q 006977 606 AYIDRQEE 613 (623)
Q Consensus 606 ayie~~k~ 613 (623)
+-|-..++
T Consensus 253 ~~I~~ae~ 260 (312)
T smart00787 253 TEIAEAEK 260 (312)
T ss_pred HHHHHHHH
Confidence 55544443
No 69
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=20.50 E-value=4.9e+02 Score=24.46 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=38.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH----HHHHHHHHHHHHHHHhh
Q 006977 566 PYEKEELLHAAVCRVDALEAELI----ATKKALHEAL----MRQEDLLAYIDRQEEAK 615 (623)
Q Consensus 566 P~EKEe~L~aa~~RvdaLE~eL~----~TKKaL~~al----~kQ~El~ayie~~k~~k 615 (623)
|.=||+++..--..+..+|.||. -.||++.+.- .....|-++++..+...
T Consensus 15 e~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r 72 (131)
T PF11068_consen 15 EKWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQER 72 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHH
Confidence 45689999999999999999886 4788888865 55566778887776544
No 70
>PF15027 DUF4525: Domain of unknown function (DUF4525)
Probab=20.48 E-value=96 Score=29.08 Aligned_cols=23 Identities=43% Similarity=0.549 Sum_probs=19.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhc
Q 006977 537 EVDLLSSVTKRLSELEEKVDTLQ 559 (623)
Q Consensus 537 ~~~~~~~~~~r~~~lEekv~~L~ 559 (623)
-+-.+-.+|+||..||.||+.|-
T Consensus 84 iAVLLddiLqRl~kLE~kvd~lv 106 (138)
T PF15027_consen 84 IAVLLDDILQRLVKLESKVDNLV 106 (138)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHe
Confidence 34457889999999999999863
No 71
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=20.35 E-value=4.3e+02 Score=22.54 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006977 572 LLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEA 614 (623)
Q Consensus 572 ~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k~~ 614 (623)
.|++.=..++.++.++....+=..+++.++.++++=++.+.++
T Consensus 27 ~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~ 69 (90)
T PF06103_consen 27 TLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEK 69 (90)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3666666777778888888888888888888888777766543
Done!