Query 006977
Match_columns 623
No_of_seqs 343 out of 1561
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 13:57:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q8g_A CRAL-TRIO domain-contai 100.0 1.7E-55 5.8E-60 464.0 20.6 276 71-352 27-309 (320)
2 1aua_A Phosphatidylinositol tr 100.0 1.5E-54 5E-59 450.5 22.6 263 80-345 26-289 (296)
3 1olm_A SEC14-like protein 2; l 100.0 2.2E-45 7.4E-50 397.6 24.7 247 73-326 2-249 (403)
4 3hx3_A Retinaldehyde-binding p 100.0 2.3E-44 7.9E-49 378.4 18.8 235 75-325 47-295 (316)
5 1r5l_A Alpha-TTP, protein (alp 100.0 2.9E-44 1E-48 365.4 16.7 229 80-324 4-235 (262)
6 3pg7_A Neurofibromin; SEC lipi 99.1 4.4E-11 1.5E-15 122.0 6.1 136 157-314 8-144 (256)
7 3peg_A Neurofibromin; SEC14 do 98.9 1E-09 3.6E-14 113.6 4.9 132 161-314 31-163 (290)
8 2hy6_A General control protein 71.0 1.1 3.8E-05 30.9 0.6 16 546-561 1-16 (34)
9 2bni_A General control protein 70.8 1.1 3.9E-05 30.9 0.6 16 546-561 1-16 (34)
10 3c3g_A Alpha/beta peptide with 70.4 5.1 0.00017 27.5 3.7 14 547-560 1-14 (33)
11 2oxj_A Hybrid alpha/beta pepti 68.7 5.8 0.0002 27.4 3.7 30 546-583 1-30 (34)
12 1uo4_A General control protein 67.6 5.5 0.00019 27.5 3.4 14 547-560 2-15 (34)
13 3c3f_A Alpha/beta peptide with 67.4 7.9 0.00027 26.7 4.1 15 546-560 1-15 (34)
14 2wq1_A General control protein 67.3 7.9 0.00027 26.5 4.1 14 547-560 1-14 (33)
15 2dam_A ETEA protein; KIAA0887, 64.6 30 0.001 27.4 7.9 46 78-131 12-57 (67)
16 3a8y_C BAG family molecular ch 64.4 19 0.00066 32.9 7.5 68 538-612 33-109 (142)
17 1m7k_A Silencer of death domai 63.7 14 0.00047 31.9 6.1 68 536-610 21-97 (99)
18 3m48_A General control protein 62.8 7.2 0.00025 26.8 3.3 13 547-559 1-13 (33)
19 1kd8_A GABH AIV, GCN4 acid bas 59.2 12 0.0004 26.2 3.9 14 546-559 1-14 (36)
20 1m62_A BAG-family molecular ch 59.0 30 0.001 29.1 7.2 66 538-610 10-84 (87)
21 1nkp_A C-MYC, MYC proto-oncoge 57.9 46 0.0016 27.7 8.3 66 546-611 16-85 (88)
22 2dhy_A CUE domain-containing p 57.1 17 0.00058 29.1 5.2 45 80-132 14-58 (67)
23 1wgl_A TOLL-interacting protei 55.1 14 0.00046 28.8 4.2 39 86-132 11-49 (59)
24 1kd8_B GABH BLL, GCN4 acid bas 53.1 25 0.00084 24.6 4.6 16 546-561 1-16 (36)
25 1nkp_B MAX protein, MYC proto- 52.8 63 0.0022 26.3 8.3 63 546-608 12-77 (83)
26 2dal_A Protein KIAA0794; FAS a 50.5 34 0.0012 26.6 5.9 41 81-130 12-52 (62)
27 2r2v_A GCN4 leucine zipper; co 48.9 25 0.00086 24.3 4.1 16 546-561 1-16 (34)
28 1v92_A NSFL1 cofactor P47; 3-h 46.3 32 0.0011 24.6 4.9 38 84-130 5-42 (46)
29 3htk_A Structural maintenance 42.7 1.1E+02 0.0036 23.2 7.8 46 569-614 10-55 (60)
30 1uk5_A BAG-family molecular ch 40.8 63 0.0021 28.3 6.6 68 538-612 29-105 (111)
31 1yke_B RNA polymerase II holoe 40.3 1.8E+02 0.0061 26.7 10.1 68 537-612 51-126 (151)
32 1ugo_A BCL2-associated athanog 40.1 41 0.0014 28.9 5.2 66 539-611 18-92 (99)
33 1ic2_A Tropomyosin alpha chain 39.3 75 0.0026 25.9 6.6 59 541-603 15-73 (81)
34 3rrk_A V-type ATPase 116 kDa s 37.2 1.2E+02 0.0043 30.9 9.6 65 549-613 199-269 (357)
35 3e21_A HFAF1, FAS-associated f 36.9 65 0.0022 23.6 5.2 37 84-128 5-41 (45)
36 2p2u_A HOST-nuclease inhibitor 36.7 2.4E+02 0.0082 26.2 10.6 69 533-614 10-78 (171)
37 2dah_A Ubiquilin-3; UBA domain 36.3 77 0.0026 24.0 5.7 38 86-132 11-48 (54)
38 1z96_A DNA-damage, UBA-domain 35.1 56 0.0019 22.4 4.5 21 109-129 19-39 (40)
39 3etw_A Adhesin A; antiparallel 34.5 95 0.0032 27.5 6.8 74 542-615 5-108 (119)
40 1ufz_A Hypothetical protein BA 34.1 65 0.0022 26.8 5.3 41 85-132 35-75 (83)
41 3e3v_A Regulatory protein RECX 33.9 27 0.00094 32.7 3.5 77 50-131 85-162 (177)
42 1pl5_A Regulatory protein SIR4 33.0 65 0.0022 27.9 5.3 40 578-617 95-134 (142)
43 1wr1_B Ubiquitin-like protein 32.3 77 0.0026 24.4 5.2 38 85-131 18-55 (58)
44 2q9q_C DNA replication complex 31.9 1E+02 0.0035 29.3 7.3 26 564-589 20-45 (196)
45 2oqq_A Transcription factor HY 31.1 33 0.0011 24.8 2.7 16 544-559 15-30 (42)
46 1ykh_B RNA polymerase II holoe 31.0 2.8E+02 0.0097 24.6 12.1 67 537-611 51-125 (132)
47 1nyh_A Regulatory protein SIR4 30.7 74 0.0025 28.2 5.4 40 578-617 119-158 (166)
48 1vej_A Riken cDNA 4931431F19; 29.8 88 0.003 25.4 5.4 38 85-131 30-67 (74)
49 2di0_A Activating signal coint 27.9 1.2E+02 0.0041 24.4 5.8 45 79-131 8-52 (71)
50 2dna_A Unnamed protein product 27.8 1.2E+02 0.0041 24.1 5.7 45 78-131 11-57 (67)
51 2bwb_A Ubiquitin-like protein 26.7 98 0.0034 22.5 4.7 25 106-130 20-44 (46)
52 2ke4_A CDC42-interacting prote 26.7 81 0.0028 26.9 4.9 46 551-597 41-88 (98)
53 2z5i_I TM, tropomyosin alpha-1 25.2 48 0.0016 23.8 2.6 20 574-593 20-39 (40)
54 3u1c_A Tropomyosin alpha-1 cha 24.6 1.3E+02 0.0043 25.6 5.8 56 544-603 21-76 (101)
55 3hf0_A GCN4-PLI SIDE chain seq 24.4 1.4E+02 0.0048 19.9 4.5 28 569-596 6-33 (34)
56 1otr_A Protein CUE2; protein-p 24.2 1E+02 0.0035 23.0 4.4 25 108-132 20-44 (49)
57 2dzl_A Protein FAM100B; UBA-li 24.1 1.4E+02 0.0048 23.5 5.5 36 86-130 19-54 (66)
58 1oai_A Nuclear RNA export fact 22.4 2.3E+02 0.0079 21.7 6.3 46 79-133 2-47 (59)
59 3dfg_A Xcrecx, regulatory prot 22.2 56 0.0019 30.1 3.3 75 50-130 83-157 (162)
60 1hlo_A Protein (transcription 21.8 1.1E+02 0.0037 24.7 4.7 47 546-592 22-71 (80)
61 2ql2_B Neurod1, neurogenic dif 21.6 1.1E+02 0.0037 23.7 4.3 43 546-588 12-58 (60)
62 3d5l_A Regulatory protein RECX 21.2 44 0.0015 32.4 2.5 72 50-129 128-203 (221)
63 4aya_A DNA-binding protein inh 21.1 1.2E+02 0.0042 25.8 4.9 45 545-589 34-82 (97)
64 2l5g_B Putative uncharacterize 20.6 1.6E+02 0.0055 21.3 4.6 35 568-606 3-37 (42)
No 1
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=1.7e-55 Score=464.01 Aligned_cols=276 Identities=36% Similarity=0.629 Sum_probs=249.6
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCccccccch
Q 006977 71 VSSVSIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEF 150 (623)
Q Consensus 71 v~s~~ied~~d~~E~~aV~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~l~WRke~g~d~i~~d~~~ 150 (623)
.+++...+ ++++|+++|++||+||.+++ ++...|| .+||||||||+||+++|.+||.++++||+++++|.+..++.+
T Consensus 27 ~~~g~~~~-lt~~q~~~l~~lR~~l~~~~-~~~~~dD-~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~ 103 (320)
T 3q8g_A 27 ALPGTPGN-LTKEQEEALLQFRSILLEKN-YKERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYEN 103 (320)
T ss_dssp SCTTSTTC-CCHHHHHHHHHHHHHHHHTT-CCSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHH
T ss_pred CCCCCCCC-CCHHHHHHHHHHHHHHHhcC-CCCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcccccccccc
Confidence 34444444 47889999999999999988 4566777 599999999999999999999999999999999999877655
Q ss_pred H------HHHHHHhccCcccccCCCCCCcEEEEeccccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCC
Q 006977 151 K------EINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHID 224 (623)
Q Consensus 151 ~------el~~vlk~~p~~~~G~Dk~GRPV~i~rlg~~d~~kl~~~~t~~~~ik~~v~~~E~~l~~~~pacsi~~~~~i~ 224 (623)
+ +...+.++++++++|+|++||||+|+++|++|++++++.++.+++++++++.+|.+++.++++|+...+..++
T Consensus 104 ~~~~~~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve 183 (320)
T 3q8g_A 104 NKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIE 183 (320)
T ss_dssp THHHHHHHHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCC
T ss_pred ccccchhHHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcc
Confidence 4 4455778999999999999999999999999999988888999999999999999998888889888888899
Q ss_pred CeEEEEeCCCCCCCCCChhHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhcceEEeCCCchhH
Q 006977 225 SSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSK 304 (623)
Q Consensus 225 ~~tiIiD~~G~sl~~~~~~~~~lik~i~kilq~~YPErL~rI~IVNaP~~f~~lw~iVK~FLdpkTr~KI~~lg~~~~~~ 304 (623)
++++|+|++|+++++++. .+.+++.+++++|+|||+||+++||||+|++|+++|++|++||+++|++||+|+++++.+.
T Consensus 184 ~~~~IiD~~g~sl~~~~~-~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~ 262 (320)
T 3q8g_A 184 TSCTVLDLKGISLSNAYH-VLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKE 262 (320)
T ss_dssp CEEEEEECTTCCHHHHHH-THHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHH
T ss_pred eeEEEEECCCCCHHHHHH-HHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHH
Confidence 999999999999998864 3788999999999999999999999999999999999999999999999999999888899
Q ss_pred HHhhcCCCCCccccCCCcCCCC-CCCCccCCCCCCCChHHHHHhhcCCC
Q 006977 305 LLEIIDARELPEFLGGTCNCAD-QGGCLRSDKGPWQNPEILKMVLNGGA 352 (623)
Q Consensus 305 L~e~Id~~~LP~eyGGt~~~~~-~ggc~~~~~gpW~dp~i~k~~~~~~~ 352 (623)
|.++||+++||++|||+++|.+ +|||+.+|.|||+||++++ .+|++
T Consensus 263 L~~~i~~~~LP~~yGG~~~~~~~~ggc~~~~~gpw~~~~~~~--~~~~~ 309 (320)
T 3q8g_A 263 LLKQIPIENLPVKYGGTSVLHNPNDKFYYSDIGPWRDPRYIG--PEGEI 309 (320)
T ss_dssp HHHHSCGGGSBGGGTSCBCCSSTTSCGGGBCBSGGGCTTTCC--TTCCC
T ss_pred HHhhCChhhCChhhCCCCCCCCCCCCeecCCCCCCCChhhcC--CCCcc
Confidence 9999999999999999999976 6999999999999999876 44544
No 2
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=1.5e-54 Score=450.54 Aligned_cols=263 Identities=37% Similarity=0.690 Sum_probs=242.6
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHhc
Q 006977 80 RDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSY 159 (623)
Q Consensus 80 ~d~~E~~aV~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~l~WRke~g~d~i~~d~~~~el~~vlk~ 159 (623)
++++|+++|++||++|.+++ ++...|| .+||||||||+||+++|.+||.++++||++++++.+..++...+...+.++
T Consensus 26 l~~~q~~~l~~lr~~l~~~~-~~~~~dd-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~~~~~~~ 103 (296)
T 1aua_A 26 LDSAQEKALAELRKLLEDAG-FIERLDD-STLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKF 103 (296)
T ss_dssp CCTTHHHHHHHHHHHHHHTT-CCSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTTHHHHGGG
T ss_pred CCHHHHHHHHHHHHHHHhcC-CCCCCch-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCcHHHHHHh
Confidence 47788999999999999887 4666777 599999999999999999999999999999999988776654444556788
Q ss_pred cCcccccCCCCCCcEEEEeccccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCCCCC
Q 006977 160 YPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKN 239 (623)
Q Consensus 160 ~p~~~~G~Dk~GRPV~i~rlg~~d~~kl~~~~t~~~~ik~~v~~~E~~l~~~~pacsi~~~~~i~~~tiIiD~~G~sl~~ 239 (623)
++++++|+|++||||+|+++|++|++++++..+.+++++++++.+|.+++.++++|+...+.+++++++|+|++|+++++
T Consensus 104 ~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~~~ 183 (296)
T 1aua_A 104 YPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISS 183 (296)
T ss_dssp SCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHH
T ss_pred CCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCCHHH
Confidence 99999999999999999999999999988888999999999999999999888889887788899999999999999998
Q ss_pred CChhHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhcceEEeCCCchhHHHhhcCCCCCccccC
Q 006977 240 FSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLG 319 (623)
Q Consensus 240 ~~~~~~~lik~i~kilq~~YPErL~rI~IVNaP~~f~~lw~iVK~FLdpkTr~KI~~lg~~~~~~L~e~Id~~~LP~eyG 319 (623)
++.. +.+++.+++++|+|||+||+++||||+|++|+++|++|++||+++|++||+|+++++.+.|.++||+++||++||
T Consensus 184 ~~~~-~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~~yG 262 (296)
T 1aua_A 184 AYSV-MSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFG 262 (296)
T ss_dssp HHHH-HHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSSBGGGT
T ss_pred HHHH-HHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHhhCcHHhC
Confidence 8753 789999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred CCcCCCC-CCCCccCCCCCCCChHHHH
Q 006977 320 GTCNCAD-QGGCLRSDKGPWQNPEILK 345 (623)
Q Consensus 320 Gt~~~~~-~ggc~~~~~gpW~dp~i~k 345 (623)
|+++|.. +|||+.++.|||++|++++
T Consensus 263 G~~~~~~~~~g~~~~~~~~w~~~~~~~ 289 (296)
T 1aua_A 263 GKSEVDESKGGLYLSDIGPWRDPKYIG 289 (296)
T ss_dssp SCBCCCGGGCCSTTCCCSGGGCGGGCC
T ss_pred CCCCCCCCCCCceeCCCCCCCChhhcc
Confidence 9999976 6899999999999999875
No 3
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=2.2e-45 Score=397.57 Aligned_cols=247 Identities=30% Similarity=0.469 Sum_probs=218.8
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHhCC-CCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCccccccchH
Q 006977 73 SVSIEDVRDVEELQAVDAFRQSLIMDE-LLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFK 151 (623)
Q Consensus 73 s~~ied~~d~~E~~aV~~fR~~L~~~~-~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~l~WRke~g~d~i~~d~~~~ 151 (623)
++-..+ ++++|+++|++||++|.... ++| ..|| .+||||||||+||+++|.+||.++++||++++++.+... ..+
T Consensus 2 ~g~~~~-l~~~q~~~l~~lr~~l~~~~~~l~-~~dD-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~-~~~ 77 (403)
T 1olm_A 2 SGRVGD-LSPRQKEALAKFRENVQDVLPALP-NPDD-YFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISW-QPP 77 (403)
T ss_dssp CSBTTB-CCHHHHHHHHHHHHHHGGGGGGSS-CCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGS-CCC
T ss_pred CCCccC-CCHHHHHHHHHHHHHHHhhccCCC-CCCh-hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCccccc-CCH
Confidence 444444 47899999999999998874 455 4666 599999999999999999999999999999999988763 223
Q ss_pred HHHHHHhccCcccccCCCCCCcEEEEeccccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEe
Q 006977 152 EINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILD 231 (623)
Q Consensus 152 el~~vlk~~p~~~~G~Dk~GRPV~i~rlg~~d~~kl~~~~t~~~~ik~~v~~~E~~l~~~~pacsi~~~~~i~~~tiIiD 231 (623)
+ .+.++++++++|+|++||||+|+++|++|++++++..+.+++++++++.+|.++..+. .|+...+.+++++++|+|
T Consensus 78 ~--~~~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~-~~s~~~g~~v~~~~~I~D 154 (403)
T 1olm_A 78 E--VIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECA-HQTTKLGRKVETITIIYD 154 (403)
T ss_dssp H--HHHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHH-HHHHHHTSCCCCEEEEEE
T ss_pred H--HHHHhCCceeeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHH-hhHHhhCCcccceEEEEE
Confidence 3 2456788889999999999999999999999988888999999999999999998643 344445567899999999
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhcceEEeCCCchhHHHhhcCC
Q 006977 232 VQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDA 311 (623)
Q Consensus 232 ~~G~sl~~~~~~~~~lik~i~kilq~~YPErL~rI~IVNaP~~f~~lw~iVK~FLdpkTr~KI~~lg~~~~~~L~e~Id~ 311 (623)
++|+++++++++.+++++.++.++|+||||||+++||||+|++|.++|+++++||+++|++||+|+++++.+.|.++||+
T Consensus 155 ~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~ 234 (403)
T 1olm_A 155 CEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISP 234 (403)
T ss_dssp CTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCG
T ss_pred CCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcCh
Confidence 99999999988888999999999999999999999999999999999999999999999999999998888899999999
Q ss_pred CCCccccCCCcCCCC
Q 006977 312 RELPEFLGGTCNCAD 326 (623)
Q Consensus 312 ~~LP~eyGGt~~~~~ 326 (623)
++||++|||++++++
T Consensus 235 ~~LP~~yGG~~~~~~ 249 (403)
T 1olm_A 235 DQVPVEYGGTMTDPD 249 (403)
T ss_dssp GGSBGGGTSSBCCTT
T ss_pred hhCchhhCCCcCCCC
Confidence 999999999998854
No 4
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=2.3e-44 Score=378.40 Aligned_cols=235 Identities=20% Similarity=0.334 Sum_probs=198.6
Q ss_pred cccCCCCHH--HHHHHHHHHHHHHhCCCCC-----------CCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCC
Q 006977 75 SIEDVRDVE--ELQAVDAFRQSLIMDELLP-----------ERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGV 141 (623)
Q Consensus 75 ~ied~~d~~--E~~aV~~fR~~L~~~~~Lp-----------~~~dD~~~LLRFLrArkfDvekA~k~l~~~l~WRke~g~ 141 (623)
+.+++++.+ .+++|++||+||.++++++ ..+|| .+|+||||||+||+++|.+||.++++||++++.
T Consensus 47 a~~eL~E~~~~~~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD-~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~~ 125 (316)
T 3hx3_A 47 AKDELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDS-GFFLRFIRARKFNVGRAYELLRGYVNFRLQYPE 125 (316)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHhCCCccccccccccccCCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCch
Confidence 345555433 3689999999999999874 34566 599999999999999999999999999999983
Q ss_pred CccccccchHHHHHHHhc-cCcccccCCCCCCcEEEEeccccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhh
Q 006977 142 DTIMEDFEFKEINEVLSY-YPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAK 220 (623)
Q Consensus 142 d~i~~d~~~~el~~vlk~-~p~~~~G~Dk~GRPV~i~rlg~~d~~kl~~~~t~~~~ik~~v~~~E~~l~~~~pacsi~~~ 220 (623)
++.+..++++..+++. ++.+++|+|++||||+|+++|++|+++ .+.+++++++++.+|.++.. ..
T Consensus 126 --~~~~~~~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~----~~~~~~~r~~~~~lE~~l~~--------~~ 191 (316)
T 3hx3_A 126 --LFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQE----ITFDEILQAYCFILEKLLEN--------EE 191 (316)
T ss_dssp --GTTTCCHHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTT----SCHHHHHHHHHHHHHHHTTS--------HH
T ss_pred --hhcCCCHHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCC----CCHHHHHHHHHHHHHHHHhc--------cc
Confidence 3444455666655554 456789999999999999999999987 48899999999999998753 23
Q ss_pred CCCCCeEEEEeCCCCCCCCCChhHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhcceEEeCCC
Q 006977 221 RHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNK 300 (623)
Q Consensus 221 ~~i~~~tiIiD~~G~sl~~~~~~~~~lik~i~kilq~~YPErL~rI~IVNaP~~f~~lw~iVK~FLdpkTr~KI~~lg~~ 300 (623)
.+++|+++|+|++|++++|+.......++.+++++|+|||+||+++||||+|++|.++|+++++||+++|++||+|++++
T Consensus 192 ~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~~ 271 (316)
T 3hx3_A 192 TQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDD 271 (316)
T ss_dssp HHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEETC
T ss_pred CCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCCC
Confidence 46789999999999999987554467899999999999999999999999999999999999999999999999999876
Q ss_pred chhHHHhhcCCCCCccccCCCcCCC
Q 006977 301 YQSKLLEIIDARELPEFLGGTCNCA 325 (623)
Q Consensus 301 ~~~~L~e~Id~~~LP~eyGGt~~~~ 325 (623)
+ +.|.++||+++||++|||++++.
T Consensus 272 ~-~~L~~~I~~~~LP~eyGG~~~~~ 295 (316)
T 3hx3_A 272 L-SGFYQEIDENILPSDFGGTLPKY 295 (316)
T ss_dssp C-HHHHHHSCGGGSBGGGTSSBCCC
T ss_pred H-HHHHhhCCHhhCcHhhCCCCCCc
Confidence 6 68999999999999999999863
No 5
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=2.9e-44 Score=365.39 Aligned_cols=229 Identities=24% Similarity=0.337 Sum_probs=193.8
Q ss_pred CCHHHHHHHHHHHHHHHhCC--CCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHH
Q 006977 80 RDVEELQAVDAFRQSLIMDE--LLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVL 157 (623)
Q Consensus 80 ~d~~E~~aV~~fR~~L~~~~--~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~l~WRke~g~d~i~~d~~~~el~~vl 157 (623)
+++.|+++|++||+++.+++ ++|...|| .+|+||||||+||+++|.+||.++++||++++. +..++.+.++....
T Consensus 4 ls~~~~~~l~~lr~~l~~~~~~~~~~~~dd-~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~--i~~~~~~~~~~~~~ 80 (262)
T 1r5l_A 4 MSPLLQPGLAALRRRAREAGVPLAPLPLTD-SFLLRFLRARDFDLDLAWRLLKNYYKWRAECPE--ISADLHPRSIIGLL 80 (262)
T ss_dssp -----CTTHHHHHHHHHHHTCCCSSSCCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHH--HHSCCCGGGTHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCcccCCCCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChH--hhhcCChHHHHHHH
Confidence 46788899999999998875 45667777 499999999999999999999999999999962 33333344444444
Q ss_pred hc-cCcccccCCCCCCcEEEEeccccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCC
Q 006977 158 SY-YPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVG 236 (623)
Q Consensus 158 k~-~p~~~~G~Dk~GRPV~i~rlg~~d~~kl~~~~t~~~~ik~~v~~~E~~l~~~~pacsi~~~~~i~~~tiIiD~~G~s 236 (623)
+. ++.+++|+|++||||+|+++|++|+++ .+..++++++++.+|.++... ..++.|+++|+|++|++
T Consensus 81 ~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~----~~~~~~~r~~~~~~E~~~~~~--------~~~~~g~~~I~D~~g~s 148 (262)
T 1r5l_A 81 KAGYHGVLRSRDPTGSKVLIYRIAHWDPKV----FTAYDVFRVSLITSELIVQEV--------ETQRNGIKAIFDLEGWQ 148 (262)
T ss_dssp HTTCEEECSSCCTTCCEEEEEEGGGCCTTT----SCHHHHHHHHHHHHHHHTTSH--------HHHHHCEEEEEECTTCC
T ss_pred HcCCccCCCCcCCCCCEEEEEeccccCccc----CCHHHHHHHHHHHHHHHHhCh--------hhcccceEEEEECCCCC
Confidence 43 456678999999999999999999987 478899999999999876541 23457999999999999
Q ss_pred CCCCChhHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhcceEEeCCCchhHHHhhcCCCCCcc
Q 006977 237 LKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPE 316 (623)
Q Consensus 237 l~~~~~~~~~lik~i~kilq~~YPErL~rI~IVNaP~~f~~lw~iVK~FLdpkTr~KI~~lg~~~~~~L~e~Id~~~LP~ 316 (623)
++|++...+++++.+++++|+|||+||+++||||+|++|+++|+++++||+++|++||+|+++++.+.|.++|| ++||+
T Consensus 149 ~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~ 227 (262)
T 1r5l_A 149 FSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPL 227 (262)
T ss_dssp HHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCG
T ss_pred HHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCcH
Confidence 99886555789999999999999999999999999999999999999999999999999999888899999999 99999
Q ss_pred ccCCCcCC
Q 006977 317 FLGGTCNC 324 (623)
Q Consensus 317 eyGGt~~~ 324 (623)
+|||++..
T Consensus 228 ~yGG~~~~ 235 (262)
T 1r5l_A 228 EYGGEEFS 235 (262)
T ss_dssp GGTCSSCC
T ss_pred hhCCCCCC
Confidence 99999754
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.11 E-value=4.4e-11 Score=121.97 Aligned_cols=136 Identities=14% Similarity=0.152 Sum_probs=110.7
Q ss_pred HhccCcccccCCCCCCcEEEEeccccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCC
Q 006977 157 LSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVG 236 (623)
Q Consensus 157 lk~~p~~~~G~Dk~GRPV~i~rlg~~d~~kl~~~~t~~~~ik~~v~~~E~~l~~~~pacsi~~~~~i~~~tiIiD~~G~s 236 (623)
.+....+..|.|++||||+++.+++++.+. .+++.++.|++..++.... ...++|+|+.|++
T Consensus 8 ~~~~ify~~G~d~dGrpViv~~~~~l~~~~----~D~e~Ll~~vl~tl~~~~~--------------~~y~lV~d~T~~~ 69 (256)
T 3pg7_A 8 KTLSIFYQAGTSKAGNPIFYYVARRFKTGQ----INGDLLIYHVLLTLKPYYA--------------KPYEIVVDLTHTG 69 (256)
T ss_dssp HHHTSEEEEEECTTSCEEEEEEGGGCCBTT----BCHHHHHHHHHHHHTTTTT--------------SCEEEEEECTTCC
T ss_pred HHcCCEEEcCcCCCCCEEEEEEeecCCCCC----CCHHHHHHHHHHHHHHhcC--------------CCeEEEEECCCCC
Confidence 344444555899999999999999998865 4788888887776665432 4689999999999
Q ss_pred CCCCChhHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHH-HHhcCChhhhcceEEeCCCchhHHHhhcCCCCC
Q 006977 237 LKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNT-VKSFLDPKTTSKIHVLGNKYQSKLLEIIDAREL 314 (623)
Q Consensus 237 l~~~~~~~~~lik~i~kilq~~YPErL~rI~IVNaP~~f~~lw~i-VK~FLdpkTr~KI~~lg~~~~~~L~e~Id~~~L 314 (623)
..+.+. .++++.+..++...|...|+++||+|++++|+..|+. .++|.+.+...|++++++ .++|.++|+.++|
T Consensus 70 ~~n~p~--~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~s--l~eL~~~i~~~~L 144 (256)
T 3pg7_A 70 PSNRFK--TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQQ 144 (256)
T ss_dssp GGGCCC--HHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESS--TTGGGGTSCGGGC
T ss_pred cccCCc--HHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECC--HHHHHhhcCHHHc
Confidence 876553 7899999999999999999999999999999977665 456666688899999966 5889999987766
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.87 E-value=1e-09 Score=113.65 Aligned_cols=132 Identities=14% Similarity=0.160 Sum_probs=98.9
Q ss_pred CcccccCCCCCCcEEEEeccccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCCCCCC
Q 006977 161 PHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNF 240 (623)
Q Consensus 161 p~~~~G~Dk~GRPV~i~rlg~~d~~kl~~~~t~~~~ik~~v~~~E~~l~~~~pacsi~~~~~i~~~tiIiD~~G~sl~~~ 240 (623)
..+..|.|++||||+++.+++++... .+.+.++-|++..++.... ...++|+|+.|++..+-
T Consensus 31 ~f~~~g~d~dG~PViv~~~~~~~~~~----~D~e~Lly~il~tl~~~~~--------------~~y~lV~D~T~~~~~n~ 92 (290)
T 3peg_A 31 IFYQAGTSKAGNPIFYYVARRFKTGQ----INGDLLIYHVLLTLKPYYA--------------KPYEIVVDLTHTGPSNR 92 (290)
T ss_dssp TEEEEEECTTSCEEEEEEGGGCCBTT----BCHHHHHHHHHHHHTTTTT--------------SCEEEEEECTTCCGGGC
T ss_pred eEEEeccCCCCCEEEEEEeecCCccC----CCHHHHHHHHHHHHHHhcC--------------CCeEEEEEcCCCCccCC
Confidence 33445889999999999999998765 4777777777666554432 47899999999998765
Q ss_pred ChhHHHHHHHHHHHhccccccccceEEEEecChHHHHHH-HHHHhcCChhhhcceEEeCCCchhHHHhhcCCCCC
Q 006977 241 SKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLW-NTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDAREL 314 (623)
Q Consensus 241 ~~~~~~lik~i~kilq~~YPErL~rI~IVNaP~~f~~lw-~iVK~FLdpkTr~KI~~lg~~~~~~L~e~Id~~~L 314 (623)
+. .++++.+..++...|+..|+++||+|++.+|+..+ ...+.|...+..+|+.+++.. ..|..+++.+++
T Consensus 93 p~--~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~~--~~L~~~i~~~~~ 163 (290)
T 3peg_A 93 FK--TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCP--GKLAEHIEHEQQ 163 (290)
T ss_dssp CC--HHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESSS--CC----------
T ss_pred Ch--HHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCCH--HHHHhhCCHHHh
Confidence 43 78999999999999999999999999999998754 566778888889999998653 458888887754
No 8
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=70.96 E-value=1.1 Score=30.89 Aligned_cols=16 Identities=19% Similarity=0.453 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhcCC
Q 006977 546 KRLSELEEKVDTLQAK 561 (623)
Q Consensus 546 ~r~~~lEekv~~L~~K 561 (623)
+||..||+||.+|-.+
T Consensus 1 ~RMnQLEdkVEeLl~~ 16 (34)
T 2hy6_A 1 MKVKQLADAVEELASA 16 (34)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHh
Confidence 4788899999887543
No 9
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=70.77 E-value=1.1 Score=30.90 Aligned_cols=16 Identities=25% Similarity=0.642 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhcCC
Q 006977 546 KRLSELEEKVDTLQAK 561 (623)
Q Consensus 546 ~r~~~lEekv~~L~~K 561 (623)
+||..||+||.+|-.+
T Consensus 1 eRMnQLEdKvEeLl~~ 16 (34)
T 2bni_A 1 XRMKQIEDKLEEILSK 16 (34)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHc
Confidence 5899999999888543
No 10
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=70.45 E-value=5.1 Score=27.47 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhcC
Q 006977 547 RLSELEEKVDTLQA 560 (623)
Q Consensus 547 r~~~lEekv~~L~~ 560 (623)
||..||+||.+|-.
T Consensus 1 RMnQLEdKvEeLl~ 14 (33)
T 3c3g_A 1 RMKXIEXKLXEIXS 14 (33)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHH
Confidence 68889999988754
No 11
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=68.72 E-value=5.8 Score=27.38 Aligned_cols=30 Identities=37% Similarity=0.512 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHH
Q 006977 546 KRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDAL 583 (623)
Q Consensus 546 ~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaL 583 (623)
+||..||+||.+|-.+ |+ -|.+-|.|.++|
T Consensus 1 eRMnQLE~kVEeLl~~-------n~-~Le~eV~rLk~l 30 (34)
T 2oxj_A 1 XRMXQLEXKVXELLXK-------NX-HLEXEVXRLKXL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHH-------HH-HHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHh-------hh-hHHHHHHHHHHH
Confidence 4889999999887543 32 244455555543
No 12
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=67.63 E-value=5.5 Score=27.51 Aligned_cols=14 Identities=21% Similarity=0.553 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhcC
Q 006977 547 RLSELEEKVDTLQA 560 (623)
Q Consensus 547 r~~~lEekv~~L~~ 560 (623)
||..||+||.+|-.
T Consensus 2 RM~QLEdKVEeLl~ 15 (34)
T 1uo4_A 2 RMKQIEDKGEEILS 15 (34)
T ss_dssp -CHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHH
Confidence 88899999987743
No 13
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=67.36 E-value=7.9 Score=26.68 Aligned_cols=15 Identities=20% Similarity=0.499 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhcC
Q 006977 546 KRLSELEEKVDTLQA 560 (623)
Q Consensus 546 ~r~~~lEekv~~L~~ 560 (623)
+||..||+||.+|-.
T Consensus 1 eRMnQLEdKVEeLl~ 15 (34)
T 3c3f_A 1 XRMXQIEXKLEXILS 15 (34)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHh
Confidence 588999999988753
No 14
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=67.35 E-value=7.9 Score=26.53 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhcC
Q 006977 547 RLSELEEKVDTLQA 560 (623)
Q Consensus 547 r~~~lEekv~~L~~ 560 (623)
||..||+||.+|-.
T Consensus 1 RMnQLEdKVEell~ 14 (33)
T 2wq1_A 1 RMKQLEDKIEENTS 14 (33)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHH
Confidence 68889999987754
No 15
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.55 E-value=30 Score=27.44 Aligned_cols=46 Identities=11% Similarity=0.064 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 006977 78 DVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (623)
Q Consensus 78 d~~d~~E~~aV~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~ 131 (623)
+-++..+.+.|.+|...-. ..|......||...+||++.|+..+-+
T Consensus 12 ~~Ls~~~~e~i~qF~~ITg--------~~d~~~A~~~Le~~~WnLe~Av~~ff~ 57 (67)
T 2dam_A 12 RDLTQEQTEKLLQFQDLTG--------IESMDQCRHTLEQHNWNIEAAVQDRLN 57 (67)
T ss_dssp CCCCHHHHHHHHHHHHHHC--------CSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hhcChhHHHHHHHHHHHhC--------CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3456778889999998772 124457899999999999999887643
No 16
>3a8y_C BAG family molecular chaperone regulator 5; BAG domain, HSP70, ATPase domain, protein complex, triple helix, structural genomics, NPPSFA; 2.30A {Homo sapiens}
Probab=64.44 E-value=19 Score=32.88 Aligned_cols=68 Identities=25% Similarity=0.390 Sum_probs=52.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 006977 538 VDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKE-----ELLHAAVCRVDALEAE----LIATKKALHEALMRQEDLLAYI 608 (623)
Q Consensus 538 ~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKE-----e~L~aa~~RvdaLE~e----L~~TKKaL~~al~kQ~El~ayi 608 (623)
-..+..+..++++|+.+|+....| +.||| |||.--+=+.|+||.+ +-..+|+ ++-+=.-++++|
T Consensus 33 ~~aI~~V~~eVd~L~~eV~~F~G~----~~dkey~~L~E~L~k~LLKLD~IdteGd~~vR~aRK~---aVk~VQ~~Le~L 105 (142)
T 3a8y_C 33 HKAVWNVLGNLSEIQGEVLSFDGN----RTDKNYIRLEELLTKQLLALDAVDPQGEEKCKAARKQ---AVRLAQNILSYL 105 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSC----TTSHHHHHHHHHHHHHHHHHHTCCCTTCHHHHHHHHH---HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHH---HHHHHHHHHHHH
Confidence 346788999999999999999777 56774 7999999999999887 4455554 444546677888
Q ss_pred HHHH
Q 006977 609 DRQE 612 (623)
Q Consensus 609 e~~k 612 (623)
|.++
T Consensus 106 D~k~ 109 (142)
T 3a8y_C 106 DLKS 109 (142)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8755
No 17
>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=63.66 E-value=14 Score=31.89 Aligned_cols=68 Identities=18% Similarity=0.372 Sum_probs=49.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 006977 536 TEVDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKE-----ELLHAAVCRVDALEAE----LIATKKALHEALMRQEDLLA 606 (623)
Q Consensus 536 ~~~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKE-----e~L~aa~~RvdaLE~e----L~~TKKaL~~al~kQ~El~a 606 (623)
..-..+..+...+.+|+..|+.+..++ .||| |||.--+=.+|+||.| +-..+|++ +-+=.-+++
T Consensus 21 ~~~~kI~~I~~ev~~L~~~V~~f~G~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~~RK~~---Vk~iQ~~l~ 93 (99)
T 1m7k_A 21 PSIKKIIHVLEKVQYLEQEVEEFVGKK----TDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEA---VCKIQAILE 93 (99)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCSCT----TSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHH---HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCc----hHHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHH---HHHHHHHHH
Confidence 344568899999999999999999874 5674 7899999999999887 55555543 333344555
Q ss_pred HHHH
Q 006977 607 YIDR 610 (623)
Q Consensus 607 yie~ 610 (623)
+||.
T Consensus 94 ~LD~ 97 (99)
T 1m7k_A 94 KLEK 97 (99)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5554
No 18
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=62.79 E-value=7.2 Score=26.80 Aligned_cols=13 Identities=46% Similarity=0.756 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhc
Q 006977 547 RLSELEEKVDTLQ 559 (623)
Q Consensus 547 r~~~lEekv~~L~ 559 (623)
||..||+||++|-
T Consensus 1 RM~QLE~kVEeLl 13 (33)
T 3m48_A 1 RMAQLEAKVEELL 13 (33)
T ss_dssp --CHHHHHHHHHH
T ss_pred CccHHHHHHHHHH
Confidence 6788999988774
No 19
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=59.23 E-value=12 Score=26.17 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhc
Q 006977 546 KRLSELEEKVDTLQ 559 (623)
Q Consensus 546 ~r~~~lEekv~~L~ 559 (623)
+||..||+||.+|-
T Consensus 1 eRMnQLE~kVEeLl 14 (36)
T 1kd8_A 1 XEVKQLEAEVEEIE 14 (36)
T ss_dssp -CCHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHH
Confidence 47778888887664
No 20
>1m62_A BAG-family molecular chaperone regulator-4; BAG domain, SODD, silencer of death domains, HSP70/HSC70 CO-chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=59.04 E-value=30 Score=29.11 Aligned_cols=66 Identities=18% Similarity=0.382 Sum_probs=48.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 006977 538 VDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKE-----ELLHAAVCRVDALEAE----LIATKKALHEALMRQEDLLAYI 608 (623)
Q Consensus 538 ~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKE-----e~L~aa~~RvdaLE~e----L~~TKKaL~~al~kQ~El~ayi 608 (623)
-..+..+...+.+|+..|+....| +.||| |||.--+=.+|++|.| +-..+|++ +-+=.-++++|
T Consensus 10 ~~~I~~I~~ev~~L~~~V~~f~g~----~~dkey~~L~E~L~k~LLkLD~Ie~eG~~~~R~~RK~~---Vk~iQ~~l~~L 82 (87)
T 1m62_A 10 IKKIIHVLEKVQYLEQEVEEFVGK----KTDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEA---VCKIQAILEKL 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCC----TTSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC----cchHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHH---HHHHHHHHHHH
Confidence 346788889999999999999987 46674 7899999999999887 55555543 33334456666
Q ss_pred HH
Q 006977 609 DR 610 (623)
Q Consensus 609 e~ 610 (623)
|.
T Consensus 83 D~ 84 (87)
T 1m62_A 83 EK 84 (87)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 21
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=57.87 E-value=46 Score=27.71 Aligned_cols=66 Identities=20% Similarity=0.164 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006977 546 KRLSELEEKVDTLQAKPSEMP----YEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQ 611 (623)
Q Consensus 546 ~r~~~lEekv~~L~~KP~~mP----~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~ 611 (623)
+|-.+|=+.+..|..-=|.+| ..|-.+|..|++=|+.|+.+...-..-...--.+|.+|.+-|+.+
T Consensus 16 ~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 16 QRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677778888888877655554 579999999999999999887665554555455666666666543
No 22
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.10 E-value=17 Score=29.05 Aligned_cols=45 Identities=24% Similarity=0.287 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006977 80 RDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (623)
Q Consensus 80 ~d~~E~~aV~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~ 132 (623)
...+..+++++|++.. | ..|. ..+..-|+++++|++.|++.|.++
T Consensus 14 ~~~~~~~~v~~L~~MF---P----~lD~-~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 14 RRLEFNQAMDDFKTMF---P----NMDY-DIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CCCCSHHHHHHHHHHC---S----SSCH-HHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHC---C----CCCH-HHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3344467888888876 2 2344 578899999999999999998765
No 23
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=55.14 E-value=14 Score=28.82 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006977 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (623)
Q Consensus 86 ~aV~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~ 132 (623)
+.+++|++.. | ..|. ..+-.-|++++.|++.|+.+|.++
T Consensus 11 e~l~~L~emF------P-~ld~-~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 11 EDLKAIQDMF------P-NMDQ-EVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp HHHHHHHHHC------S-SSCH-HHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHC------C-CCCH-HHHHHHHHHcCCCHHHHHHHHHcC
Confidence 5677777765 2 2345 488999999999999999998753
No 24
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=53.09 E-value=25 Score=24.60 Aligned_cols=16 Identities=31% Similarity=0.621 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhcCC
Q 006977 546 KRLSELEEKVDTLQAK 561 (623)
Q Consensus 546 ~r~~~lEekv~~L~~K 561 (623)
+||..||+||.+|-.+
T Consensus 1 eRMnQLE~KVEeLl~~ 16 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSK 16 (36)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH
Confidence 5788899999877543
No 25
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=52.80 E-value=63 Score=26.29 Aligned_cols=63 Identities=10% Similarity=0.181 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006977 546 KRLSELEEKVDTLQAKPSEMP---YEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYI 608 (623)
Q Consensus 546 ~r~~~lEekv~~L~~KP~~mP---~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayi 608 (623)
+|...|=+.+..|.+=-|..| ..|-.+|..|++=|+.|+.+...-+.-+.+--..+.+|-+-|
T Consensus 12 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 12 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777776543322 489999999999999999887776555544444444444433
No 26
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.49 E-value=34 Score=26.60 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 006977 81 DVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWA 130 (623)
Q Consensus 81 d~~E~~aV~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~ 130 (623)
...+.+.|.+|...-. .+ ......||.+.+||++.|+..+-
T Consensus 12 s~~~~e~i~qF~~iTg--------~~-~~~A~~~Le~~~WnLe~Av~~ff 52 (62)
T 2dal_A 12 SSALKGLIQQFTTITG--------AS-ESVGKHMLEACNNNLEMAVTMFL 52 (62)
T ss_dssp CHHHHHHHHHHHHHTC--------CC-HHHHHHHHHTTTSCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhC--------CC-HHHHHHHHHHcCCCHHHHHHHHH
Confidence 5666778999987651 12 35789999999999999987763
No 27
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=48.93 E-value=25 Score=24.28 Aligned_cols=16 Identities=19% Similarity=0.524 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhcCC
Q 006977 546 KRLSELEEKVDTLQAK 561 (623)
Q Consensus 546 ~r~~~lEekv~~L~~K 561 (623)
+||..||+||.+|.+|
T Consensus 1 ~RMnQledKvEel~~~ 16 (34)
T 2r2v_A 1 MKLKQVADKLEEVASK 16 (34)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH
Confidence 4788999999887654
No 28
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=46.26 E-value=32 Score=24.58 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 006977 84 ELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWA 130 (623)
Q Consensus 84 E~~aV~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~ 130 (623)
+.+.|.+|...-. . +......||.+++||++.|+..+-
T Consensus 5 ~~~~i~~F~~iTg--------~-~~~~A~~~L~~~~wdle~Ai~~ff 42 (46)
T 1v92_A 5 RQDALREFVAVTG--------A-EEDRARFFLESAGWDLQIALASFY 42 (46)
T ss_dssp HHHHHHHHHHHTC--------C-CHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred HHHHHHHHHHHhC--------c-CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4567888886541 1 235789999999999999987763
No 29
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=42.75 E-value=1.1e+02 Score=23.16 Aligned_cols=46 Identities=9% Similarity=0.167 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006977 569 KEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEA 614 (623)
Q Consensus 569 KEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k~~ 614 (623)
.++-+...=.+++.++.++..+|..|..+...+..+.+.|.+++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556788899999999999999999999999999888654
No 30
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=40.78 E-value=63 Score=28.35 Aligned_cols=68 Identities=18% Similarity=0.403 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 006977 538 VDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKE-----ELLHAAVCRVDALEAE----LIATKKALHEALMRQEDLLAYI 608 (623)
Q Consensus 538 ~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKE-----e~L~aa~~RvdaLE~e----L~~TKKaL~~al~kQ~El~ayi 608 (623)
-..+..+...+.+|+..|+....++ .||| |||.--+=++|+||.| +-..+|+ ++-+=.-++++|
T Consensus 29 ~~~I~~I~~eV~~L~~qV~~f~g~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~aRK~---aVk~iQ~~l~~L 101 (111)
T 1uk5_A 29 VLKVEAILEKVQGLEQAVDSFEGKK----TDKKYLMIEEYLTKELLALDSVDPEGRADVRQARRD---GVRKVQTILEKL 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSCS----SSHHHHHHHHHHHHHHHHHHSCCCSSCHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCc----chHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHH---HHHHHHHHHHHH
Confidence 4567888888999999999998876 6774 7899999999999887 4445544 344445567777
Q ss_pred HHHH
Q 006977 609 DRQE 612 (623)
Q Consensus 609 e~~k 612 (623)
|.+.
T Consensus 102 D~k~ 105 (111)
T 1uk5_A 102 EQKA 105 (111)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 7654
No 31
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=40.33 E-value=1.8e+02 Score=26.67 Aligned_cols=68 Identities=22% Similarity=0.369 Sum_probs=51.0
Q ss_pred hhhhHHHHHHHH--------HHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006977 537 EVDLLSSVTKRL--------SELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYI 608 (623)
Q Consensus 537 ~~~~~~~~~~r~--------~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayi 608 (623)
+.+.|..-+++| +.+|.-++.| |..=-.|.|+ +.||+.||.|+...-+-|.+++.+=++|++-|
T Consensus 51 ~~~~f~~~~~ela~dli~kakqIe~LIdsL---Pg~~~seeeQ-----~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v 122 (151)
T 1yke_B 51 PPEEFSNTIDELSTDIILKTRQINKLIDSL---PGVDVSAEEQ-----LRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHV 122 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---TTSSSCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666 6777777777 3322244444 58999999999999999999999999999988
Q ss_pred HHHH
Q 006977 609 DRQE 612 (623)
Q Consensus 609 e~~k 612 (623)
+..-
T Consensus 123 ~~~l 126 (151)
T 1yke_B 123 DSLI 126 (151)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 32
>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} SCOP: a.7.7.1
Probab=40.09 E-value=41 Score=28.92 Aligned_cols=66 Identities=20% Similarity=0.337 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCchhH-----HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 006977 539 DLLSSVTKRLSELEEKVDTLQAKPSEMPYEK-----EELLHAAVCRVDALEAEL----IATKKALHEALMRQEDLLAYID 609 (623)
Q Consensus 539 ~~~~~~~~r~~~lEekv~~L~~KP~~mP~EK-----Ee~L~aa~~RvdaLE~eL----~~TKKaL~~al~kQ~El~ayie 609 (623)
..+..+...+.+|+..|.....|+ .|| +|||.--+=++|+||.|= -..+|+ ++-+=.-++++||
T Consensus 18 ~kI~~I~~ev~~L~~~V~~f~g~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~iR~~RK~---~Vk~iQ~~l~~LD 90 (99)
T 1ugo_A 18 SRLQEIQREVKAIEPQVVGFSGLS----DDKNYKRLERILTKQLFEIDSVDTEGKGDIQQARKR---AAQETERLLKELE 90 (99)
T ss_dssp HHHHHHHHHHHHSHHHHHTCCCCT----TSSHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHHHHHHHcCcCcCCcHHHHHHHHH---HHHHHHHHHHHHH
Confidence 367888889999999999998887 355 488888899999998763 333333 3333345666666
Q ss_pred HH
Q 006977 610 RQ 611 (623)
Q Consensus 610 ~~ 611 (623)
.+
T Consensus 91 ~k 92 (99)
T 1ugo_A 91 QN 92 (99)
T ss_dssp HH
T ss_pred hc
Confidence 53
No 33
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=39.26 E-value=75 Score=25.88 Aligned_cols=59 Identities=19% Similarity=0.159 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006977 541 LSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQED 603 (623)
Q Consensus 541 ~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~E 603 (623)
.-....|+..+|.++.....+- ...|+-+.+=-.||..||.||+.+.-.|.++..+-++
T Consensus 15 ~d~a~~~~~~~e~~l~~~e~~~----~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 15 KENALDRAEQAEADKKAAEERS----KQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666555332 3456667777789999999999999999888877554
No 34
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=37.20 E-value=1.2e+02 Score=30.91 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCCCCCCchh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 006977 549 SELEEKVDTLQAKPSEMPYE-----KEELLHAAVCRVDALEAELIATKKALHEALMR-QEDLLAYIDRQEE 613 (623)
Q Consensus 549 ~~lEekv~~L~~KP~~mP~E-----KEe~L~aa~~RvdaLE~eL~~TKKaL~~al~k-Q~El~ayie~~k~ 613 (623)
+++++-+..+.-..-.+|.+ =.++|..--.|+..|+.+|..+++.|.+-+.+ ...|.++.+....
T Consensus 199 ~~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~ 269 (357)
T 3rrk_A 199 EAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKD 269 (357)
T ss_dssp HHHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666778888888889953 35888999999999999999999999999888 6777776666653
No 35
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=36.90 E-value=65 Score=23.64 Aligned_cols=37 Identities=11% Similarity=0.176 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHH
Q 006977 84 ELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHM 128 (623)
Q Consensus 84 E~~aV~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~ 128 (623)
..+.|.+|.+.- ..+|...-..||.+++||++.|+..
T Consensus 5 ~de~ia~F~~iT--------G~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 5 REMILADFQACT--------GIENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHHH--------CCCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHHH--------CCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 456788888765 2355346789999999999999753
No 36
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=36.67 E-value=2.4e+02 Score=26.17 Aligned_cols=69 Identities=9% Similarity=0.170 Sum_probs=51.1
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006977 533 PSLTEVDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQE 612 (623)
Q Consensus 533 ~~~~~~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k 612 (623)
+.+.+.+++...+++|++|+..+..+ |..+|+.+.||+.=.++. .+..+...---|..|.+|.+..+
T Consensus 10 ~~i~~~~~~~~alr~ia~l~r~~~~i-----------~~~~n~eI~~ik~~~~~~--~~~l~~~i~~l~~~l~~y~e~~r 76 (171)
T 2p2u_A 10 VIVADIRQAEGALAEIATIDRKVGEI-----------EAQMNEAIDAAKARASQK--SAPLLARRKELEDGVATFATLNK 76 (171)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhH
Confidence 34577888999999999999999876 456788888888655444 33444555566778889998876
Q ss_pred Hh
Q 006977 613 EA 614 (623)
Q Consensus 613 ~~ 614 (623)
..
T Consensus 77 ~e 78 (171)
T 2p2u_A 77 TE 78 (171)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 37
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=36.33 E-value=77 Score=23.95 Aligned_cols=38 Identities=18% Similarity=0.084 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006977 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (623)
Q Consensus 86 ~aV~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~ 132 (623)
..|++|++.= +.|.+.-++-|++.++|+++|+..|...
T Consensus 11 ~~l~~L~~MG---------F~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 11 VQLEQLRSMG---------FLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHHT---------CCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcC---------CCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4566666553 3454456899999999999999887653
No 38
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=35.11 E-value=56 Score=22.40 Aligned_cols=21 Identities=24% Similarity=0.137 Sum_probs=17.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHH
Q 006977 109 HMMLRFLKARKFDIDKAKHMW 129 (623)
Q Consensus 109 ~~LLRFLrArkfDvekA~k~l 129 (623)
+...+.|+++++|++.|...|
T Consensus 19 ~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 19 LEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 356899999999999998754
No 39
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=34.53 E-value=95 Score=27.52 Aligned_cols=74 Identities=15% Similarity=0.247 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCch--------------hHHHHHHHHHHHHHHHHH----------------HHHHHH
Q 006977 542 SSVTKRLSELEEKVDTLQAKPSEMPY--------------EKEELLHAAVCRVDALEA----------------ELIATK 591 (623)
Q Consensus 542 ~~~~~r~~~lEekv~~L~~KP~~mP~--------------EKEe~L~aa~~RvdaLE~----------------eL~~TK 591 (623)
.+++.+|..||.....|..+-.++-. +.++|.+.--.|+.-|++ ++...+
T Consensus 5 ~~i~~~l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~ 84 (119)
T 3etw_A 5 ASLVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDAL 84 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 45566666666666666655443322 233444444455555553 577889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 006977 592 KALHEALMRQEDLLAYIDRQEEAK 615 (623)
Q Consensus 592 KaL~~al~kQ~El~ayie~~k~~k 615 (623)
|.|++-+.+|++++.+.|+-|.-+
T Consensus 85 keLd~~ik~qekiIdnFE~ik~lr 108 (119)
T 3etw_A 85 KKLEAEMEQQKAVISDFEKIQALR 108 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887543
No 40
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=34.11 E-value=65 Score=26.81 Aligned_cols=41 Identities=24% Similarity=0.351 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006977 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (623)
Q Consensus 85 ~~aV~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~ 132 (623)
..+++++|..|- +...| ..|.+-....+||+++|+..+.+-
T Consensus 35 ~SCLd~iR~VlG------dsV~e-~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 35 YSCLDHMREVLG------DAVPD-DILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHHHTT------TTSCH-HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc------ccCCH-HHHHHHHHHhcCCHHHHHHHHHhc
Confidence 467889998883 23456 478899999999999999988653
No 41
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=33.87 E-value=27 Score=32.71 Aligned_cols=77 Identities=13% Similarity=0.058 Sum_probs=41.9
Q ss_pred ccchhhhhhhcccCCCCCCCccccccccCCCCHHHHHHHHH-HHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHH
Q 006977 50 ASTKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQAVDA-FRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHM 128 (623)
Q Consensus 50 ~s~~~~~s~~k~~~~r~~~~~v~s~~ied~~d~~E~~aV~~-fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~ 128 (623)
...+++.-|+.|| .+..+-.-.++++.++++.+...+ ++..+......+ ......-+.+||..++|+.+.+...
T Consensus 85 G~~~I~~eL~~KG----I~~~~I~~al~~~~~~de~e~a~~l~~Kk~~~~~~~~-~~~~~~K~~~~L~rrGF~~~~I~~v 159 (177)
T 3e3v_A 85 GPKVIKLNLSKKG----IDDNIAEDALILYTDKLQVEKGVTLAEKLANRYSHDS-YRNKQNKIKQSLLTKGFSYDIIDTI 159 (177)
T ss_dssp CHHHHHHHHHTTT----CCHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTSC-HHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred cHHHHHHHHHHcC----CCHHHHHHHHHhCCchhHHHHHHHHHHHHHhhccCCC-hHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 4556788888888 343333333344433344333333 333332211110 0111236789999999999988877
Q ss_pred HHH
Q 006977 129 WAE 131 (623)
Q Consensus 129 l~~ 131 (623)
+.+
T Consensus 160 l~~ 162 (177)
T 3e3v_A 160 IQE 162 (177)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 42
>1pl5_A Regulatory protein SIR4; parallel coiled coil homodimer, DNA binding protein/transcription complex; 2.50A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=32.98 E-value=65 Score=27.95 Aligned_cols=40 Identities=30% Similarity=0.380 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006977 578 CRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 617 (623)
Q Consensus 578 ~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k~~k~~ 617 (623)
-||-+|.-||--|||.|+.|-.+--|--|-|.++-++.|+
T Consensus 95 iritslqgdltftkkclenarsqisekdakinklmekdfq 134 (142)
T 1pl5_A 95 IRITSLQGDLTFTKKCLENARSQISEKDAKINKLMEKDFQ 134 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred eeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHHHHHhhh
Confidence 4899999999999999999988777766666665555444
No 43
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=32.30 E-value=77 Score=24.38 Aligned_cols=38 Identities=8% Similarity=-0.008 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 006977 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (623)
Q Consensus 85 ~~aV~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~ 131 (623)
...|++|++.= +.|.+..++=|++.++|+++|++.|..
T Consensus 18 ~~qi~~L~~MG---------F~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 18 EHQLRQLNDMG---------FFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHHHT---------CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcC---------CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 34566666543 344446799999999999999988754
No 44
>2q9q_C DNA replication complex GINS protein PSF1; elongated spindle, helix bundle, replication; HET: DNA; 2.36A {Homo sapiens}
Probab=31.92 E-value=1e+02 Score=29.25 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=15.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHH
Q 006977 564 EMPYEKEELLHAAVCRVDALEAELIA 589 (623)
Q Consensus 564 ~mP~EKEe~L~aa~~RvdaLE~eL~~ 589 (623)
++||=.++++..-+.+|+.+++++.+
T Consensus 20 ~L~py~~dlv~~v~~ei~~~~~~~~~ 45 (196)
T 2q9q_C 20 QLPAFNEDGLRQVLEEMKALYEQNQS 45 (196)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666655543
No 45
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=31.11 E-value=33 Score=24.80 Aligned_cols=16 Identities=50% Similarity=0.696 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHhc
Q 006977 544 VTKRLSELEEKVDTLQ 559 (623)
Q Consensus 544 ~~~r~~~lEekv~~L~ 559 (623)
+=.|.+|||++|.+|+
T Consensus 15 le~~naeLEervstLq 30 (42)
T 2oqq_A 15 LENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345555565555554
No 46
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=31.00 E-value=2.8e+02 Score=24.62 Aligned_cols=67 Identities=21% Similarity=0.385 Sum_probs=50.0
Q ss_pred hhhhHHHHHHHH--------HHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006977 537 EVDLLSSVTKRL--------SELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYI 608 (623)
Q Consensus 537 ~~~~~~~~~~r~--------~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayi 608 (623)
+.+.+..-+++| +.+|.-++.| |..=-.|.|+ +.||+.||.|+...-+-|.+++.+=++|++-|
T Consensus 51 ~~~~f~~~~~ela~dli~k~kqIe~LIdsL---P~~~~see~Q-----~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v 122 (132)
T 1ykh_B 51 PPEEFSNTIDELSTDIILKTRQINKLIDSL---PGVDVSAEEQ-----LRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHV 122 (132)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTTTCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666655655 6777777777 3322244443 58999999999999999999999999999988
Q ss_pred HHH
Q 006977 609 DRQ 611 (623)
Q Consensus 609 e~~ 611 (623)
+..
T Consensus 123 ~~~ 125 (132)
T 1ykh_B 123 DSM 125 (132)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 47
>1nyh_A Regulatory protein SIR4; coiled-coil, transcription regulation, repressor, transcript repressor; 3.10A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=30.72 E-value=74 Score=28.24 Aligned_cols=40 Identities=30% Similarity=0.380 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006977 578 CRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 617 (623)
Q Consensus 578 ~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k~~k~~ 617 (623)
-||-+|.-+|--|||.|+.|-.+--|--|-|.++-++.|+
T Consensus 119 iritslqgdltftkkclenarsqisekdakinklmekdfq 158 (166)
T 1nyh_A 119 IRITSLQGDLTFTKKCLENARSQISEKDAKINKLMEKDFQ 158 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC----
T ss_pred eeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHHHHHhhc
Confidence 4899999999999999999988777777777665555544
No 48
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=29.81 E-value=88 Score=25.37 Aligned_cols=38 Identities=21% Similarity=0.135 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 006977 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (623)
Q Consensus 85 ~~aV~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~ 131 (623)
.+.|++|++.= +.|.+..++=|++.++|+++|++.|..
T Consensus 30 e~qi~qL~eMG---------F~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 30 QQELEELKALG---------FANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHHHT---------CCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHcC---------CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 35566776653 334456799999999999999887753
No 49
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=27.92 E-value=1.2e+02 Score=24.45 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 006977 79 VRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (623)
Q Consensus 79 ~~d~~E~~aV~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~ 131 (623)
+..++-...|.++++.+ |+ ..+. ++.+.|..++.|+|.++..|-+
T Consensus 8 ~~~~~l~s~I~qV~DLf------Pd-LG~g-fi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 8 MCGVELDSLISQVKDLL------PD-LGEG-FILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp CSSHHHHHHHHHHHHHC------CS-SCHH-HHHHHHHHTTTCHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHc------cc-CCHH-HHHHHHHHhCCCHHHHHHHHHc
Confidence 34566678888888776 33 3453 7999999999999999988864
No 50
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.84 E-value=1.2e+02 Score=24.15 Aligned_cols=45 Identities=16% Similarity=0.111 Sum_probs=31.1
Q ss_pred CCCCHHH--HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 006977 78 DVRDVEE--LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (623)
Q Consensus 78 d~~d~~E--~~aV~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~ 131 (623)
+...+++ ..+|++|++.= +.|.+.-++-|++.+.|+++|++.|..
T Consensus 11 ~~~~pe~~y~~ql~qL~~MG---------F~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 11 SLQAPEVRFSKEMECLQAMG---------FVNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp SSCCHHHHTHHHHHHHHHHT---------CCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHcC---------CCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3444444 45666666553 345446699999999999999887754
No 51
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=26.72 E-value=98 Score=22.51 Aligned_cols=25 Identities=12% Similarity=0.017 Sum_probs=20.3
Q ss_pred CcHHHHHHHHHHcCCCHHHHHHHHH
Q 006977 106 DDYHMMLRFLKARKFDIDKAKHMWA 130 (623)
Q Consensus 106 dD~~~LLRFLrArkfDvekA~k~l~ 130 (623)
.|.+..++=|++.++|+++|++.|-
T Consensus 20 ~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 20 FDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4444568999999999999988764
No 52
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=26.70 E-value=81 Score=26.91 Aligned_cols=46 Identities=24% Similarity=0.350 Sum_probs=37.5
Q ss_pred HHHHHHHhcCCCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006977 551 LEEKVDTLQAKPSEM--PYEKEELLHAAVCRVDALEAELIATKKALHEA 597 (623)
Q Consensus 551 lEekv~~L~~KP~~m--P~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~a 597 (623)
|+.+..+....|. | |.--|..|+.+-.+|+.|++||-+=...|.++
T Consensus 41 l~Km~~vY~~nP~-~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 41 LKKMKDVYEKTPQ-MGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHHHHHHHCGG-GCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666766 6 77779999999999999999999988888776
No 53
>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A
Probab=25.23 E-value=48 Score=23.83 Aligned_cols=20 Identities=35% Similarity=0.395 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006977 574 HAAVCRVDALEAELIATKKA 593 (623)
Q Consensus 574 ~aa~~RvdaLE~eL~~TKKa 593 (623)
.+|++|.+.+|+++-.+||.
T Consensus 20 d~A~drAe~~E~~~k~~~~~ 39 (40)
T 2z5i_I 20 ENALDRAEQLENEVARLKKL 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHhhcc
Confidence 37899999999999998873
No 54
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=24.63 E-value=1.3e+02 Score=25.63 Aligned_cols=56 Identities=11% Similarity=0.007 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006977 544 VTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQED 603 (623)
Q Consensus 544 ~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~E 603 (623)
.+.|...+|.++..+..+- ..+|+=+.+=-.|+..||.||+.+...|.++..+-++
T Consensus 21 a~drae~~e~~~k~~e~~~----~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 21 ALDRAEQAEADKKAAEERS----KQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666654442 2466667666789999999999999888888766554
No 55
>3hf0_A GCN4-PLI SIDE chain sequence on AN (alpha-alpha- beta-alpha-beta-alpha-beta) backbone...; helix bundle, foldamer, alpha/beta-peptide, coiled coil; HET: BIL XCP B3Y XPC 16A; 2.10A {Synthetic}
Probab=24.40 E-value=1.4e+02 Score=19.88 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006977 569 KEELLHAAVCRVDALEAELIATKKALHE 596 (623)
Q Consensus 569 KEe~L~aa~~RvdaLE~eL~~TKKaL~~ 596 (623)
.|.-|.+.+....-.|.||...|..|.+
T Consensus 6 ~e~kl~e~l~kl~h~e~el~r~k~ll~e 33 (34)
T 3hf0_A 6 XEXKLXEXLXKLXHXEXELXRXKXLLXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 4566788888999999999999988865
No 56
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=24.17 E-value=1e+02 Score=22.99 Aligned_cols=25 Identities=12% Similarity=0.037 Sum_probs=21.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Q 006977 108 YHMMLRFLKARKFDIDKAKHMWAEM 132 (623)
Q Consensus 108 ~~~LLRFLrArkfDvekA~k~l~~~ 132 (623)
...+-+-|+++++|++.|+++|.+.
T Consensus 20 ~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 20 KSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3478899999999999999998765
No 57
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.08 E-value=1.4e+02 Score=23.46 Aligned_cols=36 Identities=11% Similarity=0.123 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 006977 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWA 130 (623)
Q Consensus 86 ~aV~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~ 130 (623)
+.|.+|...-. .+......||.+.+||++.|+..+-
T Consensus 19 ~~i~qF~~iTg---------~~~~~A~~~Le~~~WdLe~Al~~ff 54 (66)
T 2dzl_A 19 VMINQFVLAAG---------CAADQAKQLLQAAHWQFETALSTFF 54 (66)
T ss_dssp HHHHHHHHHHC---------CCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHcC---------CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 57888886651 1235789999999999999987763
No 58
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=22.38 E-value=2.3e+02 Score=21.69 Aligned_cols=46 Identities=13% Similarity=0.252 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 006977 79 VRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEML 133 (623)
Q Consensus 79 ~~d~~E~~aV~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~l 133 (623)
.+++++++-|.+|.+.-.. + ..+-.++|...+||.++|.+.+.+..
T Consensus 2 ~ls~~q~~mv~~~s~~Tgm--------n-~~~s~~cL~~~~Wd~~~A~~~F~~l~ 47 (59)
T 1oai_A 2 TLSPEQQEMLQAFSTQSGM--------N-LEWSQKCLQDNNWDYTRSAQAFTHLK 47 (59)
T ss_dssp CCCHHHHHHHHHHHHHHCC--------C-HHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCC--------C-HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3567778888888876521 2 24789999999999999999887654
No 59
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=22.24 E-value=56 Score=30.07 Aligned_cols=75 Identities=15% Similarity=0.094 Sum_probs=40.8
Q ss_pred ccchhhhhhhcccCCCCCCCccccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Q 006977 50 ASTKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMW 129 (623)
Q Consensus 50 ~s~~~~~s~~k~~~~r~~~~~v~s~~ied~~d~~E~~aV~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l 129 (623)
...++++.|+.|| .+..+-.-.++++.+++...+...++..+.. ..+.......-+.|||..++|+.+.+...+
T Consensus 83 G~~~I~~eL~~KG----I~~~~I~~al~~~~~de~e~a~~l~~Kk~~~--~~~~~~~~k~K~~~~L~rrGF~~~~I~~~l 156 (162)
T 3dfg_A 83 GPLHIRAELGTHG----LDSDAVSAAMATFEGDWTENALDLIRRRFGE--DGPVDLAQRRKAADLLARRGFDGNSIRLAT 156 (162)
T ss_dssp CHHHHHHHHHHTT----CCHHHHHHHHTTCCSCHHHHHHHHHHHHHCT--TCCCSHHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred cHHHHHHHHHHcC----CCHHHHHHHHHhCcHhHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 4457888898888 4444333333444322223333333333321 112111222468899999999998877665
Q ss_pred H
Q 006977 130 A 130 (623)
Q Consensus 130 ~ 130 (623)
.
T Consensus 157 ~ 157 (162)
T 3dfg_A 157 R 157 (162)
T ss_dssp T
T ss_pred h
Confidence 3
No 60
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=21.84 E-value=1.1e+02 Score=24.70 Aligned_cols=47 Identities=11% Similarity=0.233 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006977 546 KRLSELEEKVDTLQAKPSEMP---YEKEELLHAAVCRVDALEAELIATKK 592 (623)
Q Consensus 546 ~r~~~lEekv~~L~~KP~~mP---~EKEe~L~aa~~RvdaLE~eL~~TKK 592 (623)
+|...|=+.+..|.+--|.+| ..|-.+|..|+.=|+.|+.++..-+.
T Consensus 22 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~ 71 (80)
T 1hlo_A 22 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666655433332 47999999999999999988765443
No 61
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=21.62 E-value=1.1e+02 Score=23.66 Aligned_cols=43 Identities=26% Similarity=0.179 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCch----hHHHHHHHHHHHHHHHHHHHH
Q 006977 546 KRLSELEEKVDTLQAKPSEMPY----EKEELLHAAVCRVDALEAELI 588 (623)
Q Consensus 546 ~r~~~lEekv~~L~~KP~~mP~----EKEe~L~aa~~RvdaLE~eL~ 588 (623)
+|+.+|-+-+..|..--|.+|. -|=+.|..|+.=|..|+.-|.
T Consensus 12 ~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 12 NRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999888777774 588999999999999987664
No 62
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=21.17 E-value=44 Score=32.40 Aligned_cols=72 Identities=7% Similarity=0.012 Sum_probs=40.2
Q ss_pred ccchhhhhhhcccCCCCCCCccccccccCCCCHHHHH-HHHHHHHHHHhCCCCCCCCCc---HHHHHHHHHHcCCCHHHH
Q 006977 50 ASTKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQ-AVDAFRQSLIMDELLPERHDD---YHMMLRFLKARKFDIDKA 125 (623)
Q Consensus 50 ~s~~~~~s~~k~~~~r~~~~~v~s~~ied~~d~~E~~-aV~~fR~~L~~~~~Lp~~~dD---~~~LLRFLrArkfDvekA 125 (623)
...+++..|+.|| .+..+-.-.++++.++++.+ +....+..+.... . .++ ..-+.|||..++|+.+.+
T Consensus 128 G~~~I~~eL~~KG----I~~~~I~~al~~~~~~~e~e~a~~l~~Kk~~~~~---~-~~~~~~k~K~~~~L~rrGFs~~~I 199 (221)
T 3d5l_A 128 GPGIIRQHLRQKG----IGESDIDDALTQFTPEVQAELAKKLALKLFRRYR---N-QPERRREQKVQQGLTTKGFSSSVY 199 (221)
T ss_dssp CHHHHHHHHHHTT----CCHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHTT---T-SCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cHHHHHHHHHHcC----CCHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhcc---C-CChHHHHHHHHHHHHhCCCCHHHH
Confidence 4556778888887 33333333344443333333 3333333332211 1 222 357899999999999988
Q ss_pred HHHH
Q 006977 126 KHMW 129 (623)
Q Consensus 126 ~k~l 129 (623)
...+
T Consensus 200 ~~vl 203 (221)
T 3d5l_A 200 EMIK 203 (221)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6655
No 63
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=21.09 E-value=1.2e+02 Score=25.83 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchh----HHHHHHHHHHHHHHHHHHHHH
Q 006977 545 TKRLSELEEKVDTLQAKPSEMPYE----KEELLHAAVCRVDALEAELIA 589 (623)
Q Consensus 545 ~~r~~~lEekv~~L~~KP~~mP~E----KEe~L~aa~~RvdaLE~eL~~ 589 (623)
..||..|-+-++.|...-|.+|++ |=|.|..|++-|..|..-|..
T Consensus 34 r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 34 MSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 468999999999999888888887 789999999999999887754
No 64
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=20.64 E-value=1.6e+02 Score=21.33 Aligned_cols=35 Identities=29% Similarity=0.428 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006977 568 EKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLA 606 (623)
Q Consensus 568 EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~a 606 (623)
-|||||+. ++||| .|.++|.+=+.+-=.||.||-+
T Consensus 3 tk~~l~qk-I~kVd---rEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 3 SKEELIQN-MDRVD---REITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp SSSHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 46777763 55555 7888998888888888887755
Done!