BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006979
(623 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AZO|A Chain A, Crystal Structure Of Puromycin Hydrolase
pdb|3AZO|B Chain B, Crystal Structure Of Puromycin Hydrolase
Length = 662
Score = 261 bits (666), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 184/553 (33%), Positives = 272/553 (49%), Gaps = 34/553 (6%)
Query: 69 TAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEP 128
TAPYG+W+SP+ A +V+ S R G + W+ RP EAGR LV+ A +E
Sbjct: 4 TAPYGAWQSPIDAALVASRSGRPACVGAVGD-EVWWVAPRPAEAGRATLVRRRADGAEES 62
Query: 129 SDITPKEYAVRTTAQEYGG----GAFR-IFGDTVIFSNYKDQRLYKHSIDSKDSS-PLPI 182
+ P + VR EY G G R G ++F+++ DQRLY D+ + P P+
Sbjct: 63 A--LPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPL 120
Query: 183 TP--DYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL 239
TP G L +AD + P R + E + + + A+ L+G + +
Sbjct: 121 TPVSAVGGGL-RWADPVLLPERGEVWCXAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV 179
Query: 240 VSGSD----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK-RVCVAG 294
SD F PR+ P G + W+ W HP PW+ EL ++E+G R + G
Sbjct: 180 RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRXPWEGTELKTARVTEDGRFADTRTLLGG 239
Query: 295 FDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF 354
+ I ++ +W+ G L TDR G+WNLH+ + + + EF+ PLW
Sbjct: 240 PEEAIAQA----EWAPDGSLIVATDR-TGWWNLHRVDPATGAATQLCRREEEFAGPLWTP 294
Query: 355 GINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLF 414
G + + + LIA + G + LGILD L P+T+ TL
Sbjct: 295 GXRWFAPLAN----GLIAVVH-GKGAAVLGILDPESGELVDAAGPWTEW-AATLTVSGTR 348
Query: 415 VEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQK 474
G + ++ V LD +A + + + D + +Y+ P++ F T G++
Sbjct: 349 AVGVAASPRTAYEVVELDTVTGRA---RTIGARHTDPVD-PAYYPEPQIRTF-TAPDGRE 403
Query: 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG 534
+A+ YPP +P + +E PP +V +HGGPTS +L+L + Y+TSRG DVNYGG
Sbjct: 404 IHAHIYPPHSPDFTGPADELPPYVVXAHGGPTSRVPAVLDLDVAYFTSRGIGVADVNYGG 463
Query: 535 STGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAF 594
STGYGR +RERL GRWG+VDV DC + AT L G AD RL + GGSAGG+T ++L
Sbjct: 464 STGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSLVS 523
Query: 595 RDTFKAGASLYGV 607
D + G LY V
Sbjct: 524 TDVYACGTVLYPV 536
>pdb|3AZP|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZP|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZQ|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
pdb|3AZQ|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
Length = 662
Score = 247 bits (631), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 183/553 (33%), Positives = 274/553 (49%), Gaps = 34/553 (6%)
Query: 69 TAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEP 128
TAPYG+W+SP+ A +V+ S R G + W+ RP EAGR LV+ A +E
Sbjct: 4 TAPYGAWQSPIDAALVASRSGRPACVGAVGD-EVWWVAPRPAEAGRATLVRRRADGAEES 62
Query: 129 SDITPKEYAVRTTAQEYGG----GAFR-IFGDTVIFSNYKDQRLYKHSIDSKDSS-PLPI 182
+ P + VR EY G G R G ++F+++ DQRLY D+ + P P+
Sbjct: 63 A--LPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPL 120
Query: 183 TP--DYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE-IVAIALNGQNIQEPKVL 239
TP G L +AD + P + E+ + + + A+ L+G + +
Sbjct: 121 TPVSAVGGGL-RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV 179
Query: 240 VSGSD----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK-RVCVAG 294
SD F PR+ P G + W+ W HP MPW+ EL ++E+G R + G
Sbjct: 180 RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG 239
Query: 295 FDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF 354
+ I ++ +W+ G L TDR G+WNLH+ + + + EF+ PLW
Sbjct: 240 PEEAIAQA----EWAPDGSLIVATDR-TGWWNLHRVDPATGAATQLCRREEEFAGPLWTP 294
Query: 355 GINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLF 414
G+ + + + LIA + G + LGILD L P+T+ TL
Sbjct: 295 GMRWFAPLAN----GLIAVVH-GKGAAVLGILDPESGELVDAAGPWTEW-AATLTVSGTR 348
Query: 415 VEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQK 474
G + ++ V LD +A + + + D + +Y+ P++ F T G++
Sbjct: 349 AVGVAASPRTAYEVVELDTVTGRA---RTIGARHTDPVD-PAYYPEPQIRTF-TAPDGRE 403
Query: 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG 534
+A+ YPP +P + +E PP +V +HGGPTS +L+L + Y+TSRG DVNYGG
Sbjct: 404 IHAHIYPPHSPDFTGPADELPPYVVMAHGGPTSRVPAVLDLDVAYFTSRGIGVADVNYGG 463
Query: 535 STGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAF 594
STGYGR +RERL GRWG+VDV DC + AT L G AD RL + GG+AGG+T ++L
Sbjct: 464 STGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGAAGGWTAASSLVS 523
Query: 595 RDTFKAGASLYGV 607
D + G LY V
Sbjct: 524 TDVYACGTVLYPV 536
>pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE6|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE7|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|1VE7|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|2HU5|A Chain A, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU5|B Chain B, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU7|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU7|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|3O4G|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Query: 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 555
P +V HGGP +E + + G+ V NY GSTGYG E+R +++G ++
Sbjct: 361 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 420
Query: 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVSIPVIIS 614
D + A + SG A E L I G S GGY TL AL + FKAG + G S V+
Sbjct: 421 EDVSAAARWARESGLASE--LYIMGYSYGGYMTLCALTMKPGLFKAGVA--GAS--VVDW 474
Query: 615 EELWSIS 621
EE++ +S
Sbjct: 475 EEMYELS 481
>pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Query: 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 555
P +V HGGP +E + + G+ V NY GSTGYG E+R +++G ++
Sbjct: 361 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 420
Query: 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVSIPVIIS 614
D + A + SG A E L I G S GGY TL AL + FKAG + G S V+
Sbjct: 421 EDVSAAARWARESGLASE--LYIMGYSYGGYMTLCALTMKPGLFKAGVA--GAS--VVDW 474
Query: 615 EELWSIS 621
EE++ +S
Sbjct: 475 EEMYELS 481
>pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Query: 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 555
P +V HGGP +E + + G+ V NY GSTGYG E+R +++G ++
Sbjct: 361 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 420
Query: 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVSIPVIIS 614
D + A + SG A E L I G S GGY TL AL + FKAG + G S V+
Sbjct: 421 EDVSAAARWARESGLASE--LYIMGYSYGGYMTLCALTMKPGLFKAGVA--GAS--VVDW 474
Query: 615 EELWSIS 621
EE++ +S
Sbjct: 475 EEMYELS 481
>pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
pdb|2QZP|B Chain B, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
Length = 562
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Query: 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 555
P +V HGGP +E + + G+ V NY GSTGYG E+R +++G ++
Sbjct: 341 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 400
Query: 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVSIPVIIS 614
D + A + SG A E L I G S GGY TL AL + FKAG + G S V+
Sbjct: 401 EDVSAAARWARESGLASE--LYIMGYSYGGYMTLCALTMKPGLFKAGVA--GAS--VVDW 454
Query: 615 EELWSIS 621
EE++ +S
Sbjct: 455 EEMYELS 461
>pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU8|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
Length = 582
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Query: 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 555
P +V HGGP +E + + G+ V NY GSTGYG E+R +++G ++
Sbjct: 361 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 420
Query: 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVSIPVIIS 614
D + A + SG A E L I G + GGY TL AL + FKAG + G S V+
Sbjct: 421 EDVSAAARWARESGLASE--LYIMGYAYGGYMTLCALTMKPGLFKAGVA--GAS--VVDW 474
Query: 615 EELWSIS 621
EE++ +S
Sbjct: 475 EEMYELS 481
>pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
pdb|2QR5|B Chain B, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
Length = 582
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Query: 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 555
P +V GGP +E + + G+ V NY GSTGYG E+R +++G ++
Sbjct: 361 PTVVLVAGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 420
Query: 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVSIPVIIS 614
D + A + SG A E L I G S GGY TL AL + FKAG + G S V+
Sbjct: 421 EDVSAAARWARESGLASE--LYIMGYSYGGYMTLCALTMKPGLFKAGVA--GAS--VVDW 474
Query: 615 EELWSIS 621
EE++ +S
Sbjct: 475 EEMYELS 481
>pdb|1Z68|A Chain A, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
pdb|1Z68|B Chain B, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
Length = 719
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Query: 488 QASPEEKPPLLVKSHGGPTSEA-RGILNLS-IQYWTSR-GWAFVDVNYGGSTGYGREFRE 544
Q +K PLL++ +GGP S++ R + ++ I Y S+ G V+ G+ G +
Sbjct: 489 QFDRSKKYPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLY 548
Query: 545 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAF-RDTFKAGAS 603
+ + G+ +V D + + G DEKR+ I G S GGY + ALA FK G +
Sbjct: 549 AVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIA 608
Query: 604 LYGVS 608
+ VS
Sbjct: 609 VAPVS 613
>pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
pdb|2BKL|B Chain B, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 695
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 42/102 (41%), Gaps = 4/102 (3%)
Query: 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE--RLLGRWGIV 553
P L+ +GG SI W G + N G YG+ + + RL + +
Sbjct: 447 PTLLYGYGGFNVNMEANFRSSILPWLDAGGVYAVANLRGGGEYGKAWHDAGRLDKKQNVF 506
Query: 554 DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR 595
D D + A +LV KRL I GGS GG AA+ R
Sbjct: 507 D--DFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQR 546
>pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat
pdb|2GBC|B Chain B, Native Dpp-Iv (Cd26) From Rat
pdb|2GBF|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBF|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBG|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBG|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBI|A Chain A, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2GBI|B Chain B, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2I3Z|A Chain A, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2I3Z|B Chain B, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2OAE|A Chain A, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|2OAE|B Chain B, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|4FFV|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFV|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFW|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
pdb|4FFW|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
Length = 730
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Query: 493 EKPPLLVKSHGGPTSE---ARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR 549
+K PLL+ + GP S+ A LN + ++ + GS G + + R
Sbjct: 502 KKYPLLIDVYAGPCSQKADAAFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINKR 561
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608
G ++V D A + G D KR+ I G S GGY T L + FK G ++ VS
Sbjct: 562 LGTLEVEDQIEAARQFLKMGFVDSKRVAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVS 621
>pdb|1ORV|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORW|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|2BUA|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUC|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2AJ8|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJB|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJC|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJD|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
Length = 728
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL++ + GP S+ + LS + + + ++ G +GY G + + R
Sbjct: 500 KKYPLLIEVYAGPCSQKVDTVFRLSWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 559
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608
G +V D G D+KR+ I G S GGY T L A FK G ++ VS
Sbjct: 560 LGTFEVEDQIEATRQFSKMGFVDDKRIAIWGWSYGGYVTSMVLGAGSGVFKCGIAVAPVS 619
>pdb|2QT9|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QT9|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
Length = 766
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 538 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 597
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608
G +V D A G D KR+ I G S GGY T L + FK G ++ VS
Sbjct: 598 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVS 657
>pdb|1R9N|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
Length = 739
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 511 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 570
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608
G +V D A G D KR+ I G S GGY T L + FK G ++ VS
Sbjct: 571 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVS 630
>pdb|3NOX|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3NOX|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3SWW|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SWW|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3Q0T|A Chain A, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
pdb|3Q0T|B Chain B, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
Length = 753
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 502 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 561
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608
G +V D A G D KR+ I G S GGY T L + FK G ++ VS
Sbjct: 562 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVS 621
>pdb|2RIP|A Chain A, Structure Of Dppiv In Complex With An Inhibitor
Length = 729
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 501 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 560
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608
G +V D A G D KR+ I G S GGY T L + FK G ++ VS
Sbjct: 561 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVS 620
>pdb|4A5S|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
pdb|4A5S|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
Length = 740
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 500 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 559
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608
G +V D A G D KR+ I G S GGY T L + FK G ++ VS
Sbjct: 560 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVS 619
>pdb|2BGR|A Chain A, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
pdb|2BGR|B Chain B, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
Length = 738
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 510 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 569
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608
G +V D A G D KR+ I G S GGY T L + FK G ++ VS
Sbjct: 570 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVS 629
>pdb|1X70|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|1X70|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|2FJP|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2FJP|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2HHA|A Chain A, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2HHA|B Chain B, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2IIT|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIT|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIV|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2IIV|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2OPH|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2OPH|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2P8S|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2P8S|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2QOE|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|2QOE|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|3C43|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C43|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C45|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3C45|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3D4L|A Chain A, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|3D4L|B Chain B, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|2QKY|A Chain A, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|B Chain B, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|C Chain C, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|D Chain D, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|3HAB|A Chain A, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAB|B Chain B, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAC|A Chain A, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
pdb|3HAC|B Chain B, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
Length = 728
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 500 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 559
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608
G +V D A G D KR+ I G S GGY T L + FK G ++ VS
Sbjct: 560 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVS 619
>pdb|1N1M|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1N1M|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1NU6|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU6|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU8|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1NU8|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1TK3|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TK3|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TKR|A Chain A, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1TKR|B Chain B, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1W1I|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1RWQ|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|1RWQ|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|2BGN|A Chain A, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|B Chain B, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|C Chain C, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|D Chain D, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2AJL|I Chain I, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2AJL|J Chain J, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2BUB|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2BUB|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2OGZ|A Chain A, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OGZ|B Chain B, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OQI|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|C Chain C, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|D Chain D, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OLE|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|2OLE|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|3BJM|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3BJM|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3EIO|A Chain A, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3EIO|B Chain B, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3H0C|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3H0C|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3KWF|A Chain A, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3KWF|B Chain B, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3OC0|A Chain A, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3OC0|B Chain B, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|A Chain A, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|B Chain B, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|4DSA|A Chain A, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSA|B Chain B, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSZ|A Chain A, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DSZ|B Chain B, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DTC|A Chain A, Crystal Structure Of Dpp-iv With Compound C5
pdb|4DTC|B Chain B, Crystal Structure Of Dpp-iv With Compound C5
Length = 728
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 500 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 559
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608
G +V D A G D KR+ I G S GGY T L + FK G ++ VS
Sbjct: 560 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVS 619
>pdb|2RGU|A Chain A, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
pdb|2RGU|B Chain B, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
Length = 734
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 500 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 559
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608
G +V D A G D KR+ I G S GGY T L + FK G ++ VS
Sbjct: 560 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVS 619
>pdb|1R9M|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution
Length = 733
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 505 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 564
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608
G +V D A G D KR+ I G S GGY T L + FK G ++ VS
Sbjct: 565 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVS 624
>pdb|1J2E|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1J2E|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1WCY|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|1WCY|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|3VJM|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJM|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJK|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJK|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJL|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
pdb|3VJL|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
Length = 740
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 506 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 565
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608
G +V D A G D KR+ I G S GGY T L + FK G ++ VS
Sbjct: 566 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVS 625
>pdb|1PFQ|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
pdb|1PFQ|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
Length = 731
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 503 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 562
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608
G +V D A G D KR+ I G S GGY T L + FK G ++ VS
Sbjct: 563 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVS 622
>pdb|3CCB|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3G0B|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0C|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0D|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0G|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3O95|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O9V|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3OPM|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|4G1F|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
Length = 740
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 512 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 571
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608
G +V D A G D KR+ I G S GGY T L + FK G ++ VS
Sbjct: 572 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVS 631
>pdb|2ONC|A Chain A, Crystal Structure Of Human Dpp-4
pdb|2ONC|B Chain B, Crystal Structure Of Human Dpp-4
pdb|2ONC|C Chain C, Crystal Structure Of Human Dpp-4
pdb|2ONC|D Chain D, Crystal Structure Of Human Dpp-4
Length = 731
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 503 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 562
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608
G +V D A G D KR+ I G S GGY T L + FK G ++ VS
Sbjct: 563 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVS 622
>pdb|3Q8W|A Chain A, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
pdb|3Q8W|B Chain B, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
Length = 732
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 500 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 559
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608
G +V D A G D KR+ I G S GGY T L + FK G ++ VS
Sbjct: 560 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVS 619
>pdb|2G5P|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5P|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5T|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G5T|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G63|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2I03|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2OQV|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2OQV|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2I78|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2OAG|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
Length = 726
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 500 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 559
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608
G +V D A G D KR+ I G S GGY T L + FK G ++ VS
Sbjct: 560 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVS 619
>pdb|3QBJ|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3QBJ|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 508 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 567
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608
G +V D A G D KR+ I G S GGY T L + FK G ++ VS
Sbjct: 568 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVS 627
>pdb|2QJR|A Chain A, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|2QJR|B Chain B, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|3F8S|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3F8S|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 508 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 567
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608
G +V D A G D KR+ I G S GGY T L + FK G ++ VS
Sbjct: 568 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVS 627
>pdb|2JID|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
pdb|2JID|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
Length = 736
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 508 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 567
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608
G +V D A G D KR+ I G S GGY T L + FK G ++ VS
Sbjct: 568 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVS 627
>pdb|1U8E|A Chain A, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
pdb|1U8E|B Chain B, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
Length = 728
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 500 KKYPLLLDVFAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 559
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608
G +V D A G D KR+ I G S GGY T L + FK G ++ VS
Sbjct: 560 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVS 619
>pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 741
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 43/115 (37%), Gaps = 5/115 (4%)
Query: 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE--RLLGRWGIV 553
P L+ +GG + W G AF N G YG + + R + +
Sbjct: 489 PTLLYGYGGFNVALTPWFSAGFMTWIDSGGAFALANLRGGGEYGDAWHDAGRRDKKQNVF 548
Query: 554 DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGV 607
D D + +L+ +G L I GGS GG A R D F A + GV
Sbjct: 549 D--DFIAAGEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRPDLFAAASPAVGV 601
>pdb|3MUN|A Chain A, Appep_pepclose Closed State
pdb|3MUO|A Chain A, Appep_pepclose+pp Closed State
Length = 693
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 6/117 (5%)
Query: 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 555
P ++ +GG ++S+ W G + N G YG+ + +
Sbjct: 455 PTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVF 514
Query: 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVSIPVI 612
+D + A +L G RL I GGS GG A + R L V++P +
Sbjct: 515 DDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQR------PDLMRVALPAV 565
>pdb|3IUN|A Chain A, Appep_d622n Opened State
pdb|3IUQ|A Chain A, Appep_d622n+pp Closed State
pdb|3IUR|A Chain A, Appep_d266nx+h2h3 Opened State
Length = 693
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 6/117 (5%)
Query: 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 555
P ++ +GG ++S+ W G + N G YG+ + +
Sbjct: 455 PTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVF 514
Query: 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVSIPVI 612
+D + A +L G RL I GGS GG A + R L V++P +
Sbjct: 515 DDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQR------PDLMRVALPAV 565
>pdb|3IVM|A Chain A, Appep_wt+pp Closed State
Length = 693
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 35/90 (38%)
Query: 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 555
P ++ +GG ++S+ W G + N G YG+ + +
Sbjct: 455 PTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVF 514
Query: 556 NDCCSCATFLVGSGKADEKRLCITGGSAGG 585
+D + A +L G RL I GGS GG
Sbjct: 515 DDFIAAAEYLKAEGYTRTDRLAIRGGSNGG 544
>pdb|3IUJ|A Chain A, Appep_wt2 Opened State
pdb|3IUL|A Chain A, Appep_wt1 Opened State
pdb|3IUM|A Chain A, Appep_wtx Opened State
Length = 693
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 35/90 (38%)
Query: 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 555
P ++ +GG ++S+ W G + N G YG+ + +
Sbjct: 455 PTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVF 514
Query: 556 NDCCSCATFLVGSGKADEKRLCITGGSAGG 585
+D + A +L G RL I GGS GG
Sbjct: 515 DDFIAAAEYLKAEGYTRTDRLAIRGGSNGG 544
>pdb|3FCY|A Chain A, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
pdb|3FCY|B Chain B, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
pdb|3FCY|C Chain C, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
Length = 346
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 86/238 (36%), Gaps = 50/238 (21%)
Query: 389 FGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKV---TLDDHKLKAVDFKVVW 445
F ++ L D+P + T N C P + LD+ +++VD K+
Sbjct: 23 FQGAMGLFDMPLQKLREYTGTNPC----------PEDFDEYWNRALDE--MRSVDPKIEL 70
Query: 446 SSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGP 505
S + + + L + T V G + +A Y P E K P L++ HG
Sbjct: 71 KESSFQVSFAECYDL-----YFTGVRGARIHAKYIKPKT-------EGKHPALIRFHG-- 116
Query: 506 TSEARGILNLSIQYWTS---------RGWAFVDVNYGGSTGY---GREFR------ERLL 547
S G N + Y + RG + GG TG G R + +L
Sbjct: 117 YSSNSGDWNDKLNYVAAGFTVVAMDVRGQGGQSQDVGGVTGNTLNGHIIRGLDDDADNML 176
Query: 548 GRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLY 605
R +D A ++ + DE R+ + G S GG +LA A + S Y
Sbjct: 177 FRHIFLDT---AQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPRVRKVVSEY 231
>pdb|1X9N|A Chain A, Crystal Structure Of Human Dna Ligase I Bound To
5'-Adenylated, Nicked Dna
Length = 688
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 189 PLVSYADGIFDP------RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG 242
P+ A G+ D RF R++ VRED++ + ++ ++ + IQ + SG
Sbjct: 622 PIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQSQIQNQQGEDSG 681
Query: 243 SD 244
SD
Sbjct: 682 SD 683
>pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From
Rickettsia Typhi
Length = 711
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 1/103 (0%)
Query: 494 KPPLLVKSHGG-PTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI 552
K P L++++GG A + + W V N G +G E+ + G
Sbjct: 477 KNPTLLEAYGGFQVINAPYFSRIKNEVWVKNAGVSVLANIRGGGEFGPEWHKSAQGIKRQ 536
Query: 553 VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR 595
ND + + L+ + L I GGS GG A+ R
Sbjct: 537 TAFNDFFAVSEELIKQNITSPEYLGIKGGSNGGLLVSVAMTQR 579
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,824,604
Number of Sequences: 62578
Number of extensions: 970646
Number of successful extensions: 2282
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2230
Number of HSP's gapped (non-prelim): 53
length of query: 623
length of database: 14,973,337
effective HSP length: 105
effective length of query: 518
effective length of database: 8,402,647
effective search space: 4352571146
effective search space used: 4352571146
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)