Query 006979
Match_columns 623
No_of_seqs 505 out of 3571
Neff 9.3
Searched_HMMs 46136
Date Thu Mar 28 17:13:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006979.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006979hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10115 protease 2; Provision 100.0 5.6E-39 1.2E-43 357.7 49.8 464 99-614 81-565 (686)
2 COG1506 DAP2 Dipeptidyl aminop 100.0 3.4E-35 7.3E-40 325.9 47.6 479 80-618 5-518 (620)
3 KOG2281 Dipeptidyl aminopeptid 100.0 5.4E-33 1.2E-37 284.1 26.6 451 139-614 145-768 (867)
4 COG1770 PtrB Protease II [Amin 100.0 5.8E-29 1.3E-33 259.0 41.9 455 107-613 91-567 (682)
5 KOG2100 Dipeptidyl aminopeptid 100.0 1.1E-25 2.5E-30 251.4 42.2 406 193-619 150-654 (755)
6 KOG2237 Predicted serine prote 99.9 5.9E-24 1.3E-28 219.7 30.6 392 193-616 184-592 (712)
7 COG1505 Serine proteases of th 99.9 3.2E-23 7E-28 213.5 28.4 232 369-615 307-542 (648)
8 PRK01029 tolB translocation pr 99.9 2.3E-21 4.9E-26 206.2 29.2 249 154-440 146-411 (428)
9 PRK05137 tolB translocation pr 99.9 3.6E-21 7.7E-26 206.6 29.8 243 155-439 166-419 (435)
10 PRK03629 tolB translocation pr 99.9 8E-21 1.7E-25 202.8 30.0 243 155-439 164-413 (429)
11 PRK04792 tolB translocation pr 99.9 4.1E-20 8.8E-25 198.2 30.5 242 156-439 184-432 (448)
12 PRK04043 tolB translocation pr 99.9 3.2E-20 6.8E-25 196.1 28.9 230 165-439 169-407 (419)
13 PRK01029 tolB translocation pr 99.9 4.4E-20 9.6E-25 196.4 29.5 263 92-401 140-415 (428)
14 PRK00178 tolB translocation pr 99.9 1.1E-19 2.4E-24 195.2 29.8 241 156-438 164-412 (430)
15 PRK04922 tolB translocation pr 99.9 1.1E-19 2.4E-24 194.9 29.1 242 156-439 169-418 (433)
16 PRK02889 tolB translocation pr 99.9 1.5E-19 3.3E-24 193.2 30.0 240 155-436 164-407 (427)
17 PRK04043 tolB translocation pr 99.8 4.7E-19 1E-23 187.2 28.5 252 95-401 152-412 (419)
18 PRK05137 tolB translocation pr 99.8 7.7E-19 1.7E-23 188.6 29.9 248 99-398 165-421 (435)
19 PRK03629 tolB translocation pr 99.8 1.2E-18 2.7E-23 186.0 30.8 251 99-399 163-416 (429)
20 PRK04792 tolB translocation pr 99.8 2.2E-18 4.8E-23 184.8 31.3 252 99-400 182-436 (448)
21 PF00930 DPPIV_N: Dipeptidyl p 99.8 4.6E-19 1E-23 184.7 23.6 246 165-440 23-324 (353)
22 PRK00178 tolB translocation pr 99.8 5.4E-18 1.2E-22 182.2 31.4 250 99-400 162-417 (430)
23 PRK02889 tolB translocation pr 99.8 5.2E-18 1.1E-22 181.4 30.6 247 100-401 164-415 (427)
24 PRK04922 tolB translocation pr 99.8 6E-18 1.3E-22 181.5 30.5 252 99-400 167-422 (433)
25 PRK01742 tolB translocation pr 99.8 3.9E-17 8.6E-22 174.8 28.4 236 155-439 169-411 (429)
26 TIGR02800 propeller_TolB tol-p 99.8 5.6E-17 1.2E-21 173.9 29.0 240 155-436 156-401 (417)
27 PF00326 Peptidase_S9: Prolyl 99.8 1.7E-19 3.7E-24 174.6 8.1 105 512-616 2-107 (213)
28 TIGR02800 propeller_TolB tol-p 99.7 9.4E-16 2E-20 164.4 29.7 251 99-400 155-408 (417)
29 PRK01742 tolB translocation pr 99.7 1.4E-15 3E-20 163.0 29.2 201 202-440 168-369 (429)
30 COG0823 TolB Periplasmic compo 99.7 1.1E-15 2.3E-20 160.5 23.6 230 165-435 173-405 (425)
31 PF00930 DPPIV_N: Dipeptidyl p 99.7 4.2E-15 9.2E-20 154.9 23.3 249 150-424 50-353 (353)
32 COG0823 TolB Periplasmic compo 99.7 6E-15 1.3E-19 154.9 24.1 206 150-397 200-410 (425)
33 PRK13604 luxD acyl transferase 99.6 4.7E-15 1E-19 146.9 14.2 136 465-616 13-149 (307)
34 PRK05077 frsA fermentation/res 99.6 2.5E-14 5.5E-19 151.4 15.1 134 460-609 167-301 (414)
35 TIGR01840 esterase_phb esteras 99.5 3.4E-14 7.3E-19 137.3 10.6 126 477-608 1-130 (212)
36 TIGR00976 /NonD putative hydro 99.5 1.1E-13 2.4E-18 152.8 13.6 132 467-612 2-136 (550)
37 PF02897 Peptidase_S9_N: Proly 99.5 2.1E-11 4.6E-16 130.5 30.0 311 99-440 78-412 (414)
38 PF05448 AXE1: Acetyl xylan es 99.5 8.4E-14 1.8E-18 141.4 10.7 146 460-615 55-217 (320)
39 PF02129 Peptidase_S15: X-Pro 99.5 5.9E-14 1.3E-18 141.0 8.4 129 471-612 1-140 (272)
40 COG3458 Acetyl esterase (deace 99.5 7.2E-14 1.6E-18 131.3 8.1 144 460-613 55-216 (321)
41 COG3386 Gluconolactonase [Carb 99.4 2.1E-11 4.5E-16 122.5 23.4 253 83-380 18-279 (307)
42 COG0412 Dienelactone hydrolase 99.4 6E-13 1.3E-17 129.6 11.6 135 462-608 3-146 (236)
43 TIGR03101 hydr2_PEP hydrolase, 99.4 8.7E-13 1.9E-17 130.2 12.2 138 463-616 2-142 (266)
44 PF12715 Abhydrolase_7: Abhydr 99.4 5.4E-13 1.2E-17 133.8 10.4 144 460-610 87-262 (390)
45 PLN02298 hydrolase, alpha/beta 99.4 1.4E-12 3.1E-17 135.1 13.4 139 460-609 31-170 (330)
46 PF06500 DUF1100: Alpha/beta h 99.4 5.2E-13 1.1E-17 136.4 9.0 134 460-610 164-299 (411)
47 PRK10566 esterase; Provisional 99.4 1.6E-12 3.6E-17 128.9 11.9 124 475-606 12-139 (249)
48 PF10503 Esterase_phd: Esteras 99.4 2.1E-12 4.6E-17 123.1 10.1 126 476-607 2-131 (220)
49 COG4946 Uncharacterized protei 99.3 6.1E-11 1.3E-15 118.7 19.2 241 154-440 50-303 (668)
50 PLN02442 S-formylglutathione h 99.3 1E-11 2.2E-16 125.3 13.1 147 460-611 17-181 (283)
51 PF14583 Pectate_lyase22: Olig 99.3 3.5E-10 7.6E-15 114.3 23.8 301 91-432 38-383 (386)
52 TIGR02821 fghA_ester_D S-formy 99.3 1.9E-11 4.1E-16 123.0 14.6 147 460-611 12-176 (275)
53 PF01738 DLH: Dienelactone hyd 99.3 6.4E-12 1.4E-16 122.0 10.0 123 475-606 1-130 (218)
54 COG2936 Predicted acyl esteras 99.3 1E-11 2.2E-16 131.2 10.9 135 462-610 20-161 (563)
55 PRK10162 acetyl esterase; Prov 99.3 3.1E-11 6.7E-16 123.9 13.5 130 461-611 57-198 (318)
56 PF08450 SGL: SMP-30/Gluconola 99.3 3.4E-10 7.5E-15 112.0 20.4 214 92-341 3-221 (246)
57 PLN02385 hydrolase; alpha/beta 99.3 2.1E-11 4.5E-16 127.4 12.1 135 463-609 63-198 (349)
58 PLN00021 chlorophyllase 99.3 5.2E-11 1.1E-15 120.9 12.9 118 473-610 37-168 (313)
59 COG3509 LpqC Poly(3-hydroxybut 99.2 2.5E-11 5.5E-16 116.5 9.7 127 471-608 43-179 (312)
60 PRK10985 putative hydrolase; P 99.2 1.1E-10 2.5E-15 120.4 13.8 134 465-612 35-172 (324)
61 PHA02857 monoglyceride lipase; 99.2 6.1E-11 1.3E-15 119.6 11.5 124 471-609 9-133 (276)
62 PF14583 Pectate_lyase22: Olig 99.2 8.9E-09 1.9E-13 104.2 24.6 279 122-440 17-336 (386)
63 COG2706 3-carboxymuconate cycl 99.2 1.2E-07 2.7E-12 93.2 31.1 283 79-398 30-332 (346)
64 cd00312 Esterase_lipase Estera 99.2 5.4E-11 1.2E-15 130.4 8.7 129 473-609 77-214 (493)
65 PRK10749 lysophospholipase L2; 99.2 2E-10 4.4E-15 118.8 12.4 136 459-608 28-166 (330)
66 PLN02652 hydrolase; alpha/beta 99.2 1.9E-10 4.2E-15 120.9 11.9 134 462-610 111-247 (395)
67 COG2945 Predicted hydrolase of 99.1 1.7E-10 3.6E-15 103.7 9.1 132 461-610 4-139 (210)
68 TIGR03100 hydr1_PEP hydrolase, 99.1 6.3E-10 1.4E-14 111.9 14.4 131 462-609 3-135 (274)
69 COG0657 Aes Esterase/lipase [L 99.1 2.4E-10 5.1E-15 117.4 11.5 126 471-612 60-195 (312)
70 PRK05371 x-prolyl-dipeptidyl a 99.1 7.3E-10 1.6E-14 125.3 15.9 95 515-615 270-380 (767)
71 COG4099 Predicted peptidase [G 99.1 2.9E-10 6.2E-15 108.4 10.4 134 464-609 163-305 (387)
72 KOG1455 Lysophospholipase [Lip 99.1 6.1E-10 1.3E-14 107.6 11.4 135 463-610 29-166 (313)
73 COG1647 Esterase/lipase [Gener 99.1 3.3E-10 7.2E-15 104.1 8.9 103 496-609 16-119 (243)
74 TIGR03866 PQQ_ABC_repeats PQQ- 99.1 1.9E-07 4.2E-12 94.6 30.3 236 156-436 44-283 (300)
75 TIGR03866 PQQ_ABC_repeats PQQ- 99.1 2.4E-07 5.3E-12 93.9 30.2 229 157-436 3-241 (300)
76 COG2706 3-carboxymuconate cycl 99.1 1.5E-06 3.2E-11 85.7 33.5 247 164-439 15-283 (346)
77 PLN02511 hydrolase 99.1 2.1E-09 4.6E-14 113.4 15.0 138 462-610 72-212 (388)
78 KOG1515 Arylacetamide deacetyl 99.1 8.3E-10 1.8E-14 111.7 11.1 129 471-614 70-213 (336)
79 COG2267 PldB Lysophospholipase 99.0 1E-09 2.2E-14 111.0 11.3 132 463-611 11-145 (298)
80 COG4946 Uncharacterized protei 99.0 6.1E-08 1.3E-12 97.6 23.0 277 80-419 217-509 (668)
81 PF12740 Chlorophyllase2: Chlo 99.0 1.1E-09 2.3E-14 105.8 10.4 113 477-609 6-132 (259)
82 PF10282 Lactonase: Lactonase, 99.0 1.3E-07 2.7E-12 98.5 26.0 276 87-397 35-332 (345)
83 PRK13616 lipoprotein LpqB; Pro 99.0 4.8E-08 1E-12 107.2 23.7 171 192-398 351-536 (591)
84 PF07859 Abhydrolase_3: alpha/ 99.0 3.3E-10 7.2E-15 109.3 5.9 102 498-610 1-112 (211)
85 PF12695 Abhydrolase_5: Alpha/ 99.0 1.4E-09 2.9E-14 98.0 8.8 96 497-610 1-97 (145)
86 KOG4391 Predicted alpha/beta h 99.0 1.8E-09 3.9E-14 98.3 7.8 134 460-611 53-187 (300)
87 PRK11028 6-phosphogluconolacto 98.9 8.3E-07 1.8E-11 92.0 28.3 257 150-436 40-310 (330)
88 PRK00870 haloalkane dehalogena 98.9 1.6E-08 3.5E-13 103.4 14.9 128 460-606 20-148 (302)
89 KOG1552 Predicted alpha/beta h 98.9 7.9E-09 1.7E-13 98.1 11.3 136 460-616 34-171 (258)
90 COG4188 Predicted dienelactone 98.9 4.4E-09 9.6E-14 105.2 9.8 131 462-595 39-181 (365)
91 COG2272 PnbA Carboxylesterase 98.9 2.6E-09 5.6E-14 110.3 7.2 128 473-609 78-218 (491)
92 PF12697 Abhydrolase_6: Alpha/ 98.9 9.5E-09 2.1E-13 99.1 10.2 103 498-611 1-104 (228)
93 PF03403 PAF-AH_p_II: Platelet 98.9 3.5E-09 7.6E-14 110.4 7.1 115 492-608 97-262 (379)
94 PLN02872 triacylglycerol lipas 98.8 5.1E-09 1.1E-13 109.8 7.7 145 459-610 42-199 (395)
95 TIGR03343 biphenyl_bphD 2-hydr 98.8 1.3E-08 2.7E-13 102.9 10.4 103 496-607 31-135 (282)
96 PF00756 Esterase: Putative es 98.8 2.8E-09 6.1E-14 105.8 5.3 135 471-610 4-152 (251)
97 COG0429 Predicted hydrolase of 98.8 3.1E-08 6.8E-13 97.3 12.2 137 460-612 50-189 (345)
98 TIGR01836 PHA_synth_III_C poly 98.8 3.5E-08 7.7E-13 103.0 12.5 134 460-611 37-174 (350)
99 PRK11460 putative hydrolase; P 98.8 2E-08 4.4E-13 98.1 9.6 113 492-607 13-137 (232)
100 PF02897 Peptidase_S9_N: Proly 98.8 3.5E-06 7.6E-11 90.2 27.8 216 193-432 126-357 (414)
101 TIGR03695 menH_SHCHC 2-succiny 98.8 2.5E-08 5.4E-13 97.7 10.1 102 496-608 2-105 (251)
102 PF00135 COesterase: Carboxyle 98.8 2.7E-09 5.9E-14 118.3 3.5 127 473-606 107-243 (535)
103 PRK11028 6-phosphogluconolacto 98.8 1.6E-05 3.5E-10 82.3 31.0 219 150-396 85-313 (330)
104 PF08450 SGL: SMP-30/Gluconola 98.8 8.2E-07 1.8E-11 87.8 20.2 218 154-418 11-245 (246)
105 PLN02211 methyl indole-3-aceta 98.8 4.9E-08 1.1E-12 98.1 11.5 104 493-607 16-121 (273)
106 TIGR01250 pro_imino_pep_2 prol 98.8 7E-08 1.5E-12 97.1 12.6 107 495-609 25-132 (288)
107 TIGR02658 TTQ_MADH_Hv methylam 98.8 9.1E-06 2E-10 83.1 27.7 243 156-435 59-333 (352)
108 TIGR02427 protocat_pcaD 3-oxoa 98.7 2.3E-08 5.1E-13 98.1 8.4 101 494-607 12-113 (251)
109 TIGR01607 PST-A Plasmodium sub 98.7 4.2E-08 9.2E-13 101.4 9.9 132 466-608 2-185 (332)
110 TIGR03611 RutD pyrimidine util 98.7 3.8E-08 8.3E-13 97.3 9.0 104 494-609 12-116 (257)
111 PLN02965 Probable pheophorbida 98.7 6.3E-08 1.4E-12 96.4 10.3 100 497-607 5-106 (255)
112 PRK13616 lipoprotein LpqB; Pro 98.7 5.9E-07 1.3E-11 98.7 18.6 158 154-339 361-533 (591)
113 PRK10673 acyl-CoA esterase; Pr 98.7 6.1E-08 1.3E-12 96.3 10.0 98 493-605 14-113 (255)
114 PF10282 Lactonase: Lactonase, 98.7 6.9E-06 1.5E-10 85.5 25.6 226 195-439 41-284 (345)
115 PLN02824 hydrolase, alpha/beta 98.7 1.4E-07 3E-12 96.1 12.6 106 496-607 30-136 (294)
116 COG3386 Gluconolactonase [Carb 98.7 5.8E-06 1.3E-10 83.4 23.5 225 154-422 36-279 (307)
117 TIGR03056 bchO_mg_che_rel puta 98.7 1.3E-07 2.8E-12 95.1 11.8 102 495-608 28-130 (278)
118 PF07224 Chlorophyllase: Chlor 98.7 5.6E-08 1.2E-12 91.8 8.2 116 475-610 33-159 (307)
119 KOG3847 Phospholipase A2 (plat 98.7 5.2E-08 1.1E-12 93.9 7.6 113 492-606 115-273 (399)
120 TIGR01249 pro_imino_pep_1 prol 98.7 1.8E-07 3.9E-12 95.8 12.3 101 496-607 28-129 (306)
121 PLN02894 hydrolase, alpha/beta 98.7 1.2E-07 2.5E-12 100.7 11.1 103 494-607 104-210 (402)
122 PRK10439 enterobactin/ferric e 98.7 2.2E-07 4.8E-12 98.1 13.0 135 461-608 180-323 (411)
123 PLN03087 BODYGUARD 1 domain co 98.7 1.9E-07 4.2E-12 99.8 12.5 120 471-608 184-309 (481)
124 TIGR02240 PHA_depoly_arom poly 98.6 1.2E-07 2.7E-12 95.4 10.4 115 471-608 10-126 (276)
125 PF02239 Cytochrom_D1: Cytochr 98.6 3.4E-06 7.4E-11 88.0 20.8 252 157-435 8-350 (369)
126 cd00707 Pancreat_lipase_like P 98.6 1.4E-07 3E-12 94.5 10.0 111 493-608 34-147 (275)
127 KOG3101 Esterase D [General fu 98.6 8.5E-08 1.8E-12 87.2 6.8 133 473-611 26-179 (283)
128 PRK03592 haloalkane dehalogena 98.6 5.8E-07 1.3E-11 91.5 13.8 99 496-607 28-127 (295)
129 cd00200 WD40 WD40 domain, foun 98.6 4.7E-05 1E-09 75.4 27.0 202 88-338 9-212 (289)
130 TIGR01392 homoserO_Ac_trn homo 98.6 2E-07 4.3E-12 97.4 9.7 129 471-608 14-162 (351)
131 PRK14875 acetoin dehydrogenase 98.5 5.6E-07 1.2E-11 94.8 12.5 101 495-608 131-232 (371)
132 KOG4178 Soluble epoxide hydrol 98.5 5.6E-07 1.2E-11 88.8 11.2 105 494-609 43-149 (322)
133 PRK03204 haloalkane dehalogena 98.5 2.6E-07 5.6E-12 93.6 9.3 100 496-607 35-135 (286)
134 PRK10349 carboxylesterase BioH 98.5 3.7E-07 8.1E-12 90.8 10.2 95 494-606 12-107 (256)
135 KOG1838 Alpha/beta hydrolase [ 98.5 1.4E-06 3.1E-11 89.0 14.2 140 462-610 94-237 (409)
136 TIGR01738 bioH putative pimelo 98.5 2.8E-07 6.1E-12 90.1 8.6 94 496-607 5-99 (245)
137 PRK11126 2-succinyl-6-hydroxy- 98.5 4.4E-07 9.6E-12 89.3 9.9 97 496-607 3-101 (242)
138 cd00200 WD40 WD40 domain, foun 98.5 5.8E-05 1.3E-09 74.7 25.3 236 147-435 12-252 (289)
139 KOG0315 G-protein beta subunit 98.5 2.6E-05 5.6E-10 73.0 20.0 204 89-340 84-295 (311)
140 KOG4627 Kynurenine formamidase 98.5 3.1E-07 6.6E-12 83.4 7.1 135 458-615 42-179 (270)
141 PLN02578 hydrolase 98.5 2.8E-07 6E-12 96.4 8.0 98 496-607 87-186 (354)
142 PRK06489 hypothetical protein; 98.5 1.2E-06 2.7E-11 91.8 12.8 110 495-607 69-188 (360)
143 PRK10115 protease 2; Provision 98.5 2.4E-05 5.3E-10 88.4 23.4 220 191-440 127-354 (686)
144 PRK07581 hypothetical protein; 98.4 6.2E-07 1.3E-11 93.3 9.4 109 494-607 40-158 (339)
145 KOG0318 WD40 repeat stress pro 98.4 0.00026 5.7E-09 73.0 27.3 148 162-331 78-265 (603)
146 PLN02679 hydrolase, alpha/beta 98.4 5.1E-07 1.1E-11 94.6 7.8 100 496-607 89-190 (360)
147 PF08662 eIF2A: Eukaryotic tra 98.4 1.1E-05 2.5E-10 76.3 16.1 119 166-315 40-158 (194)
148 PF08662 eIF2A: Eukaryotic tra 98.4 2.3E-05 5E-10 74.2 18.1 150 194-376 9-163 (194)
149 PRK11071 esterase YqiA; Provis 98.4 1.3E-06 2.9E-11 82.4 9.2 91 496-610 2-95 (190)
150 KOG4409 Predicted hydrolase/ac 98.4 1.7E-06 3.7E-11 85.7 9.9 103 496-608 91-195 (365)
151 PLN03084 alpha/beta hydrolase 98.4 1.9E-06 4.1E-11 90.3 10.8 105 495-608 127-232 (383)
152 TIGR03230 lipo_lipase lipoprot 98.3 2E-06 4.3E-11 90.4 10.2 110 494-607 40-153 (442)
153 PRK08775 homoserine O-acetyltr 98.3 2.4E-06 5.1E-11 89.0 10.1 78 519-608 94-173 (343)
154 PF02230 Abhydrolase_2: Phosph 98.3 1.1E-06 2.3E-11 85.1 6.5 116 492-610 11-142 (216)
155 PLN02919 haloacid dehalogenase 98.3 0.00069 1.5E-08 80.3 30.4 263 89-393 568-892 (1057)
156 PRK00175 metX homoserine O-ace 98.3 3.4E-06 7.3E-11 89.1 10.1 112 495-608 48-182 (379)
157 KOG2564 Predicted acetyltransf 98.3 3.2E-06 7E-11 80.7 8.5 119 456-592 45-164 (343)
158 PRK05855 short chain dehydroge 98.2 5.7E-06 1.2E-10 92.7 11.3 113 471-604 11-127 (582)
159 KOG4667 Predicted esterase [Li 98.2 6E-06 1.3E-10 75.8 9.0 138 459-615 8-146 (269)
160 KOG2055 WD40 repeat protein [G 98.2 0.00011 2.4E-09 74.5 18.6 202 89-331 214-417 (514)
161 TIGR01838 PHA_synth_I poly(R)- 98.2 1.3E-05 2.8E-10 86.8 12.9 134 460-611 163-305 (532)
162 PF06342 DUF1057: Alpha/beta h 98.2 3.1E-05 6.8E-10 74.9 13.5 104 492-607 32-136 (297)
163 TIGR02658 TTQ_MADH_Hv methylam 98.2 0.0017 3.7E-08 66.6 27.0 111 221-338 27-141 (352)
164 PF03583 LIP: Secretory lipase 98.2 5.6E-06 1.2E-10 83.5 8.5 96 515-616 17-121 (290)
165 PF02273 Acyl_transf_2: Acyl t 98.2 4.2E-05 9.1E-10 71.9 13.4 136 471-620 11-146 (294)
166 COG4757 Predicted alpha/beta h 98.2 3.8E-06 8.3E-11 78.0 6.4 120 464-596 8-127 (281)
167 PLN02980 2-oxoglutarate decarb 98.1 1.4E-05 3E-10 98.6 13.0 109 494-607 1370-1479(1655)
168 PF07433 DUF1513: Protein of u 98.1 0.0014 3.1E-08 65.0 24.5 224 156-406 19-263 (305)
169 COG0400 Predicted esterase [Ge 98.1 7.9E-06 1.7E-10 77.3 8.3 113 492-609 15-135 (207)
170 TIGR03502 lipase_Pla1_cef extr 98.1 1.4E-05 3.1E-10 89.3 10.9 99 494-594 448-575 (792)
171 KOG0645 WD40 repeat protein [G 98.1 0.002 4.4E-08 61.4 23.2 192 157-385 29-223 (312)
172 KOG0272 U4/U6 small nuclear ri 98.1 0.00042 9E-09 69.7 19.5 208 158-413 234-445 (459)
173 KOG1516 Carboxylesterase and r 98.1 4E-06 8.6E-11 93.2 5.9 128 473-608 95-232 (545)
174 PF10647 Gmad1: Lipoprotein Lp 98.1 0.0008 1.7E-08 66.6 21.5 167 147-340 26-204 (253)
175 PF10647 Gmad1: Lipoprotein Lp 98.1 0.001 2.2E-08 65.8 22.2 194 165-398 2-206 (253)
176 PLN02919 haloacid dehalogenase 98.1 0.0026 5.7E-08 75.4 29.2 247 154-436 579-892 (1057)
177 KOG0279 G protein beta subunit 98.0 0.0042 9.1E-08 59.5 24.0 228 156-435 29-265 (315)
178 KOG0293 WD40 repeat-containing 98.0 9.1E-05 2E-09 74.1 13.4 198 193-433 227-426 (519)
179 KOG2055 WD40 repeat protein [G 98.0 0.00027 5.9E-09 71.8 16.9 201 146-387 215-417 (514)
180 COG4257 Vgb Streptogramin lyas 98.0 0.0027 6E-08 60.8 22.5 253 87-399 60-315 (353)
181 KOG1553 Predicted alpha/beta h 98.0 3.4E-05 7.5E-10 75.6 10.1 138 460-614 213-351 (517)
182 KOG0291 WD40-repeat-containing 98.0 0.0025 5.4E-08 68.7 24.0 144 146-320 394-541 (893)
183 PF07433 DUF1513: Protein of u 98.0 0.0035 7.7E-08 62.2 23.7 215 191-436 5-251 (305)
184 PF06433 Me-amine-dh_H: Methyl 98.0 0.0039 8.5E-08 62.7 24.0 246 165-436 17-324 (342)
185 PF02239 Cytochrom_D1: Cytochr 98.0 0.00069 1.5E-08 70.8 19.8 186 221-436 16-206 (369)
186 KOG4499 Ca2+-binding protein R 98.0 0.00091 2E-08 62.5 18.0 133 190-337 108-245 (310)
187 COG2819 Predicted hydrolase of 98.0 0.00011 2.4E-09 71.0 12.5 53 556-608 118-172 (264)
188 PF12146 Hydrolase_4: Putative 98.0 9.4E-06 2E-10 64.3 4.3 58 472-539 1-58 (79)
189 PF08538 DUF1749: Protein of u 98.0 4.9E-05 1.1E-09 75.2 10.2 112 494-613 32-153 (303)
190 PTZ00420 coronin; Provisional 97.9 0.0017 3.6E-08 71.2 22.9 207 147-397 77-301 (568)
191 PF00561 Abhydrolase_1: alpha/ 97.9 2E-05 4.3E-10 76.4 7.3 77 525-607 1-78 (230)
192 KOG0266 WD40 repeat-containing 97.9 0.001 2.2E-08 72.0 20.9 158 144-330 203-363 (456)
193 PTZ00421 coronin; Provisional 97.9 0.0017 3.6E-08 70.5 22.3 161 147-335 78-247 (493)
194 KOG3043 Predicted hydrolase re 97.9 1.4E-05 3E-10 74.3 5.1 97 514-613 57-160 (242)
195 KOG1446 Histone H3 (Lys4) meth 97.9 0.0019 4.1E-08 62.9 19.4 156 157-343 114-272 (311)
196 TIGR02171 Fb_sc_TIGR02171 Fibr 97.9 0.00063 1.4E-08 76.0 18.3 98 203-320 319-420 (912)
197 PTZ00421 coronin; Provisional 97.9 0.013 2.8E-07 63.7 28.3 120 191-337 76-202 (493)
198 KOG0266 WD40 repeat-containing 97.9 0.004 8.7E-08 67.4 24.4 157 147-337 162-322 (456)
199 COG3490 Uncharacterized protei 97.9 0.0039 8.4E-08 60.1 20.8 151 156-320 82-245 (366)
200 KOG0272 U4/U6 small nuclear ri 97.9 0.00034 7.3E-09 70.3 14.3 215 156-418 188-407 (459)
201 KOG1445 Tumor-specific antigen 97.9 0.00013 2.9E-09 76.5 11.9 206 89-332 628-843 (1012)
202 KOG1446 Histone H3 (Lys4) meth 97.8 0.028 6.2E-07 54.9 26.2 248 88-394 14-267 (311)
203 PF08840 BAAT_C: BAAT / Acyl-C 97.8 3.4E-05 7.4E-10 74.2 6.2 53 555-608 3-56 (213)
204 COG1770 PtrB Protease II [Amin 97.8 0.03 6.6E-07 60.6 28.4 221 191-440 129-356 (682)
205 KOG0293 WD40 repeat-containing 97.8 0.00072 1.6E-08 67.8 15.3 241 90-387 271-513 (519)
206 KOG0271 Notchless-like WD40 re 97.8 0.00061 1.3E-08 67.7 14.5 115 221-354 346-461 (480)
207 KOG0772 Uncharacterized conser 97.8 0.001 2.2E-08 68.7 16.5 256 89-388 215-487 (641)
208 PF09752 DUF2048: Uncharacteri 97.8 0.00026 5.5E-09 71.3 12.2 125 474-606 76-208 (348)
209 COG2382 Fes Enterochelin ester 97.8 0.00011 2.4E-09 72.0 9.0 136 462-611 70-215 (299)
210 KOG0279 G protein beta subunit 97.8 0.0011 2.4E-08 63.4 15.2 155 147-336 66-225 (315)
211 PF10340 DUF2424: Protein of u 97.7 0.00015 3.2E-09 74.2 10.0 116 477-611 108-238 (374)
212 KOG2624 Triglyceride lipase-ch 97.7 0.00011 2.5E-09 76.3 9.4 141 459-611 46-202 (403)
213 PF05677 DUF818: Chlamydia CHL 97.7 0.00061 1.3E-08 67.8 13.8 141 456-613 107-260 (365)
214 KOG0291 WD40-repeat-containing 97.7 0.0089 1.9E-07 64.7 22.9 220 154-419 319-541 (893)
215 PF05728 UPF0227: Uncharacteri 97.7 0.00016 3.6E-09 67.5 8.9 94 497-614 1-97 (187)
216 KOG0318 WD40 repeat stress pro 97.7 0.065 1.4E-06 55.9 27.9 208 81-337 313-521 (603)
217 KOG1454 Predicted hydrolase/ac 97.7 9.9E-05 2.1E-09 75.7 7.8 100 493-602 56-157 (326)
218 KOG0275 Conserved WD40 repeat- 97.7 0.0014 3E-08 63.7 14.9 259 88-398 213-477 (508)
219 KOG0271 Notchless-like WD40 re 97.7 0.00038 8.3E-09 69.1 10.9 179 193-414 118-302 (480)
220 KOG4497 Uncharacterized conser 97.7 0.0038 8.3E-08 61.1 17.4 90 301-406 319-408 (447)
221 TIGR01839 PHA_synth_II poly(R) 97.6 0.00039 8.5E-09 74.8 11.8 130 460-611 190-331 (560)
222 KOG0645 WD40 repeat protein [G 97.6 0.027 5.8E-07 54.0 22.3 166 191-394 15-186 (312)
223 PRK06765 homoserine O-acetyltr 97.6 0.00018 4E-09 75.6 9.1 113 493-607 54-195 (389)
224 KOG0286 G-protein beta subunit 97.6 0.014 3.1E-07 56.4 20.7 227 148-419 59-293 (343)
225 KOG0296 Angio-associated migra 97.6 0.035 7.5E-07 55.4 23.2 248 148-436 110-360 (399)
226 PTZ00420 coronin; Provisional 97.6 0.018 3.9E-07 63.2 23.7 220 88-341 74-301 (568)
227 COG0627 Predicted esterase [Ge 97.6 0.00021 4.4E-09 72.4 8.2 120 492-611 51-190 (316)
228 COG4257 Vgb Streptogramin lyas 97.6 0.015 3.2E-07 56.0 19.9 226 156-435 74-308 (353)
229 KOG0315 G-protein beta subunit 97.6 0.017 3.6E-07 54.7 19.7 226 163-429 59-287 (311)
230 KOG2096 WD40 repeat protein [G 97.5 0.044 9.5E-07 53.7 22.8 296 77-417 75-392 (420)
231 COG3571 Predicted hydrolase of 97.5 0.00052 1.1E-08 60.3 8.6 109 492-607 11-124 (213)
232 KOG1274 WD40 repeat protein [G 97.5 0.0028 6E-08 69.9 16.1 137 164-328 117-259 (933)
233 KOG0286 G-protein beta subunit 97.5 0.037 8E-07 53.6 21.4 199 191-429 56-258 (343)
234 PRK07868 acyl-CoA synthetase; 97.5 0.00087 1.9E-08 79.8 13.2 137 459-610 37-179 (994)
235 COG3490 Uncharacterized protei 97.5 0.016 3.5E-07 56.0 18.6 111 191-320 68-181 (366)
236 COG0596 MhpC Predicted hydrola 97.5 0.00043 9.3E-09 67.6 8.7 99 496-609 22-124 (282)
237 COG2021 MET2 Homoserine acetyl 97.4 0.00081 1.8E-08 67.8 9.5 113 493-607 49-181 (368)
238 KOG1445 Tumor-specific antigen 97.4 0.0014 3E-08 69.1 11.4 106 221-341 700-806 (1012)
239 KOG2139 WD40 repeat protein [G 97.4 0.085 1.8E-06 52.6 22.6 112 148-282 199-312 (445)
240 KOG2314 Translation initiation 97.4 0.1 2.2E-06 54.9 24.1 133 164-320 281-414 (698)
241 PLN00181 protein SPA1-RELATED; 97.3 0.26 5.6E-06 57.6 30.2 141 156-329 546-688 (793)
242 TIGR02171 Fb_sc_TIGR02171 Fibr 97.3 0.018 4E-07 64.7 18.9 115 156-283 320-442 (912)
243 PF07676 PD40: WD40-like Beta 97.2 0.00063 1.4E-08 45.7 4.8 38 237-277 2-39 (39)
244 KOG2048 WD40 repeat protein [G 97.2 0.37 7.9E-06 52.1 27.0 168 240-435 379-551 (691)
245 PF07819 PGAP1: PGAP1-like pro 97.2 0.0016 3.4E-08 63.1 9.1 100 496-606 5-121 (225)
246 KOG2139 WD40 repeat protein [G 97.2 0.0037 8.1E-08 61.9 11.3 113 191-332 196-310 (445)
247 PTZ00472 serine carboxypeptida 97.2 0.0019 4.1E-08 69.6 10.4 129 472-612 60-220 (462)
248 KOG4497 Uncharacterized conser 97.2 0.0044 9.6E-08 60.6 11.4 142 196-379 14-156 (447)
249 PF01674 Lipase_2: Lipase (cla 97.1 0.0013 2.8E-08 62.9 7.5 88 498-593 4-94 (219)
250 PF00151 Lipase: Lipase; Inte 97.1 0.0011 2.4E-08 68.0 7.4 112 492-607 68-186 (331)
251 COG3391 Uncharacterized conser 97.1 0.25 5.4E-06 52.1 25.2 204 194-435 77-286 (381)
252 PF11144 DUF2920: Protein of u 97.1 0.0036 7.8E-08 64.4 10.4 62 548-609 156-220 (403)
253 PF10230 DUF2305: Uncharacteri 97.1 0.0025 5.3E-08 63.6 9.2 112 495-610 2-125 (266)
254 KOG0305 Anaphase promoting com 97.1 0.054 1.2E-06 57.6 19.3 176 147-354 220-397 (484)
255 KOG2314 Translation initiation 97.1 0.11 2.3E-06 54.7 20.9 210 196-436 255-484 (698)
256 PF05577 Peptidase_S28: Serine 97.1 0.0016 3.5E-08 70.1 8.4 111 495-609 29-149 (434)
257 KOG0273 Beta-transducin family 97.0 0.068 1.5E-06 55.0 18.8 226 146-413 237-467 (524)
258 KOG0288 WD40 repeat protein Ti 97.0 0.0063 1.4E-07 61.3 11.3 140 157-328 314-458 (459)
259 KOG0772 Uncharacterized conser 97.0 0.15 3.3E-06 53.2 21.4 149 157-330 181-346 (641)
260 KOG0973 Histone transcription 96.9 0.047 1E-06 61.6 18.1 106 191-317 130-236 (942)
261 KOG1407 WD40 repeat protein [F 96.9 0.092 2E-06 50.2 17.2 174 193-413 67-246 (313)
262 KOG0289 mRNA splicing factor [ 96.9 0.18 3.9E-06 51.5 20.0 191 157-397 275-470 (506)
263 KOG0296 Angio-associated migra 96.9 0.36 7.7E-06 48.4 21.7 152 153-338 73-225 (399)
264 KOG0305 Anaphase promoting com 96.9 0.061 1.3E-06 57.1 17.7 225 157-429 190-418 (484)
265 PF06977 SdiA-regulated: SdiA- 96.9 0.16 3.5E-06 49.7 19.4 177 193-396 24-208 (248)
266 KOG0273 Beta-transducin family 96.8 0.27 5.9E-06 50.8 21.0 205 92-337 280-486 (524)
267 PRK11138 outer membrane biogen 96.8 0.89 1.9E-05 48.2 27.1 228 150-436 116-357 (394)
268 PF13360 PQQ_2: PQQ-like domai 96.8 0.43 9.2E-06 46.4 22.6 184 221-436 46-234 (238)
269 KOG1274 WD40 repeat protein [G 96.8 0.22 4.8E-06 55.5 21.7 146 160-336 71-221 (933)
270 KOG1407 WD40 repeat protein [F 96.8 0.12 2.7E-06 49.3 17.2 214 156-420 78-294 (313)
271 PF06433 Me-amine-dh_H: Methyl 96.8 0.16 3.6E-06 51.3 19.2 194 221-439 17-220 (342)
272 KOG1007 WD repeat protein TSSC 96.8 0.074 1.6E-06 51.5 15.8 227 164-418 39-278 (370)
273 PLN00181 protein SPA1-RELATED; 96.8 0.37 8E-06 56.3 25.4 154 148-336 487-651 (793)
274 KOG0263 Transcription initiati 96.8 0.02 4.3E-07 62.3 13.4 143 151-328 500-646 (707)
275 PLN02733 phosphatidylcholine-s 96.8 0.0019 4.1E-08 68.7 5.5 88 511-607 108-200 (440)
276 KOG2110 Uncharacterized conser 96.7 0.053 1.1E-06 54.2 14.9 160 147-332 90-249 (391)
277 COG1506 DAP2 Dipeptidyl aminop 96.7 0.084 1.8E-06 59.5 18.8 103 192-316 14-117 (620)
278 KOG4389 Acetylcholinesterase/B 96.7 0.002 4.3E-08 66.7 4.9 128 474-608 120-255 (601)
279 KOG0973 Histone transcription 96.7 0.025 5.4E-07 63.7 13.8 114 193-330 72-200 (942)
280 PRK11138 outer membrane biogen 96.7 1.1 2.4E-05 47.5 27.2 230 94-394 116-358 (394)
281 KOG2382 Predicted alpha/beta h 96.6 0.0095 2.1E-07 59.4 9.2 102 492-602 49-153 (315)
282 KOG4840 Predicted hydrolases o 96.6 0.0075 1.6E-07 56.1 7.7 107 495-611 36-147 (299)
283 COG3391 Uncharacterized conser 96.6 0.37 8E-06 50.8 21.4 197 156-394 87-288 (381)
284 TIGR03300 assembly_YfgL outer 96.5 1.1 2.3E-05 47.2 24.6 235 151-435 62-300 (377)
285 KOG1273 WD40 repeat protein [G 96.5 0.17 3.6E-06 49.7 16.0 119 193-341 26-145 (405)
286 KOG0263 Transcription initiati 96.5 0.035 7.5E-07 60.5 12.7 152 93-282 498-650 (707)
287 KOG1539 WD repeat protein [Gen 96.4 0.031 6.8E-07 61.3 11.9 90 221-330 556-645 (910)
288 KOG0639 Transducin-like enhanc 96.4 0.072 1.6E-06 55.2 13.6 143 151-330 516-662 (705)
289 COG4947 Uncharacterized protei 96.4 0.0079 1.7E-07 53.6 5.8 55 560-616 89-144 (227)
290 KOG0282 mRNA splicing factor [ 96.4 0.016 3.5E-07 59.6 8.9 170 156-355 313-485 (503)
291 TIGR02604 Piru_Ver_Nterm putat 96.3 0.15 3.2E-06 53.6 16.5 137 195-342 18-181 (367)
292 KOG2919 Guanine nucleotide-bin 96.3 0.54 1.2E-05 46.5 18.6 148 157-333 125-281 (406)
293 PF00450 Peptidase_S10: Serine 96.3 0.027 5.9E-07 60.2 11.2 141 464-613 16-186 (415)
294 KOG1273 WD40 repeat protein [G 96.3 0.8 1.7E-05 45.2 19.5 147 157-335 37-185 (405)
295 PF00975 Thioesterase: Thioest 96.3 0.013 2.8E-07 56.9 7.8 95 497-605 2-101 (229)
296 KOG3967 Uncharacterized conser 96.3 0.031 6.7E-07 51.7 9.4 108 495-606 101-226 (297)
297 KOG0303 Actin-binding protein 96.3 0.19 4.1E-06 50.8 15.5 208 91-331 84-294 (472)
298 KOG1520 Predicted alkaloid syn 96.2 0.063 1.4E-06 54.6 11.8 146 149-313 121-277 (376)
299 KOG0284 Polyadenylation factor 96.2 0.084 1.8E-06 53.4 12.5 187 88-318 180-368 (464)
300 PF06821 Ser_hydrolase: Serine 96.2 0.032 6.9E-07 51.5 9.1 90 498-609 1-92 (171)
301 COG5354 Uncharacterized protei 96.1 1.3 2.9E-05 46.4 21.3 192 195-417 76-293 (561)
302 KOG0264 Nucleosome remodeling 96.1 1.2 2.7E-05 45.8 20.7 197 156-387 191-404 (422)
303 PF05990 DUF900: Alpha/beta hy 96.1 0.018 3.9E-07 56.1 7.7 114 494-613 17-142 (233)
304 KOG0275 Conserved WD40 repeat- 96.1 0.19 4.1E-06 49.3 14.1 198 142-384 304-506 (508)
305 TIGR03300 assembly_YfgL outer 96.1 2.3 5.1E-05 44.7 32.0 229 151-436 102-342 (377)
306 PF06028 DUF915: Alpha/beta hy 96.0 0.014 3E-07 57.4 6.4 111 495-610 12-145 (255)
307 PRK13614 lipoprotein LpqB; Pro 96.0 0.8 1.7E-05 50.4 20.4 170 193-397 345-526 (573)
308 KOG0643 Translation initiation 96.0 1.6 3.5E-05 42.2 22.8 157 147-328 53-217 (327)
309 KOG2315 Predicted translation 96.0 1.4 3.1E-05 46.7 20.8 159 195-386 222-389 (566)
310 KOG2096 WD40 repeat protein [G 96.0 0.83 1.8E-05 45.1 17.8 163 150-336 193-363 (420)
311 COG3204 Uncharacterized protei 95.9 1.5 3.3E-05 43.2 19.5 118 193-332 88-211 (316)
312 PF06057 VirJ: Bacterial virul 95.9 0.049 1.1E-06 50.3 9.1 97 497-606 4-105 (192)
313 KOG0278 Serine/threonine kinas 95.9 0.42 9.1E-06 45.5 15.2 144 155-333 155-299 (334)
314 COG3204 Uncharacterized protei 95.9 1.3 2.8E-05 43.6 18.7 211 79-320 76-303 (316)
315 KOG0284 Polyadenylation factor 95.8 0.12 2.5E-06 52.4 11.9 213 72-331 120-337 (464)
316 PF11187 DUF2974: Protein of u 95.8 0.016 3.4E-07 55.9 5.7 76 532-608 43-123 (224)
317 PF07676 PD40: WD40-like Beta 95.8 0.021 4.5E-07 38.2 4.6 28 181-212 3-30 (39)
318 KOG0295 WD40 repeat-containing 95.8 1.3 2.8E-05 44.6 18.5 246 152-435 116-367 (406)
319 KOG0306 WD40-repeat-containing 95.7 0.53 1.2E-05 51.5 16.8 214 154-412 423-648 (888)
320 KOG2106 Uncharacterized conser 95.7 0.38 8.3E-06 50.2 15.1 92 221-332 428-520 (626)
321 KOG2394 WD40 protein DMR-N9 [G 95.6 0.022 4.7E-07 59.5 6.0 57 193-261 293-350 (636)
322 KOG1524 WD40 repeat-containing 95.6 0.24 5.3E-06 51.9 13.4 85 162-264 82-166 (737)
323 KOG0265 U5 snRNP-specific prot 95.6 1.8 3.9E-05 42.5 18.4 150 156-334 146-297 (338)
324 PRK04940 hypothetical protein; 95.6 0.044 9.6E-07 50.4 7.2 36 574-612 60-96 (180)
325 PF07082 DUF1350: Protein of u 95.5 0.11 2.4E-06 50.0 10.1 97 477-592 8-108 (250)
326 KOG2394 WD40 protein DMR-N9 [G 95.5 0.1 2.2E-06 54.7 10.2 72 243-330 290-361 (636)
327 PF13360 PQQ_2: PQQ-like domai 95.4 2 4.2E-05 41.6 19.2 191 153-394 35-235 (238)
328 KOG0303 Actin-binding protein 95.4 0.74 1.6E-05 46.7 15.5 159 149-334 88-250 (472)
329 PRK13614 lipoprotein LpqB; Pro 95.4 3 6.4E-05 46.1 21.6 167 246-435 345-521 (573)
330 KOG1539 WD repeat protein [Gen 95.3 0.047 1E-06 60.0 7.6 84 165-265 556-639 (910)
331 PRK13613 lipoprotein LpqB; Pro 95.3 2.8 6.1E-05 46.7 21.6 166 192-394 364-544 (599)
332 KOG0306 WD40-repeat-containing 95.3 2.1 4.6E-05 47.1 19.6 156 146-331 375-538 (888)
333 KOG0268 Sof1-like rRNA process 95.3 0.042 9E-07 54.8 6.3 145 156-332 201-346 (433)
334 KOG2048 WD40 repeat protein [G 95.3 0.87 1.9E-05 49.3 16.5 167 191-395 383-554 (691)
335 KOG2315 Predicted translation 95.2 3.8 8.3E-05 43.6 20.8 218 163-419 144-375 (566)
336 KOG2281 Dipeptidyl aminopeptid 95.2 2 4.3E-05 46.7 18.7 187 242-434 356-585 (867)
337 TIGR02604 Piru_Ver_Nterm putat 95.2 1.1 2.3E-05 47.1 17.2 127 166-317 48-200 (367)
338 KOG0307 Vesicle coat complex C 95.1 0.19 4.1E-06 57.4 11.8 219 88-337 64-288 (1049)
339 PF04762 IKI3: IKI3 family; I 95.1 8.5 0.00019 45.5 25.6 61 191-263 76-140 (928)
340 KOG0277 Peroxisomal targeting 95.0 1.1 2.3E-05 43.1 14.5 181 164-384 37-218 (311)
341 PF04762 IKI3: IKI3 family; I 95.0 5 0.00011 47.4 23.5 97 248-354 214-314 (928)
342 PF03088 Str_synth: Strictosid 95.0 0.17 3.6E-06 40.9 7.9 77 195-281 2-87 (89)
343 PRK13613 lipoprotein LpqB; Pro 94.9 1.1 2.5E-05 49.7 17.2 163 149-336 367-542 (599)
344 COG3208 GrsT Predicted thioest 94.9 0.056 1.2E-06 51.7 5.9 86 492-592 5-92 (244)
345 KOG0282 mRNA splicing factor [ 94.8 0.51 1.1E-05 49.0 13.0 146 154-331 226-372 (503)
346 KOG0643 Translation initiation 94.8 4.1 8.9E-05 39.5 20.5 141 221-385 74-218 (327)
347 KOG0771 Prolactin regulatory e 94.8 0.43 9.3E-06 48.7 12.1 92 195-312 149-241 (398)
348 KOG1214 Nidogen and related ba 94.8 1.6 3.4E-05 48.5 16.9 198 150-394 1032-1231(1289)
349 KOG2111 Uncharacterized conser 94.7 1 2.3E-05 44.4 14.1 106 156-283 150-258 (346)
350 PF12048 DUF3530: Protein of u 94.7 0.38 8.3E-06 49.0 12.0 139 458-608 59-229 (310)
351 KOG0265 U5 snRNP-specific prot 94.7 4.8 0.00011 39.6 22.3 127 156-313 103-229 (338)
352 COG5354 Uncharacterized protei 94.6 4.6 9.9E-05 42.6 19.2 126 195-340 227-354 (561)
353 PF06977 SdiA-regulated: SdiA- 94.6 4.9 0.00011 39.4 19.9 205 238-476 16-236 (248)
354 cd00216 PQQ_DH Dehydrogenases 94.6 8.5 0.00019 42.1 31.7 53 380-436 365-428 (488)
355 KOG2106 Uncharacterized conser 94.6 0.3 6.6E-06 50.9 10.6 96 149-261 412-509 (626)
356 KOG0289 mRNA splicing factor [ 94.6 6.6 0.00014 40.6 20.8 199 192-435 263-465 (506)
357 KOG3724 Negative regulator of 94.5 0.092 2E-06 57.9 7.2 74 522-602 130-210 (973)
358 PF13449 Phytase-like: Esteras 94.5 6.5 0.00014 40.5 20.7 130 149-283 89-253 (326)
359 PLN03016 sinapoylglucose-malat 94.5 0.11 2.5E-06 55.3 7.9 132 471-611 48-213 (433)
360 KOG2182 Hydrolytic enzymes of 94.5 0.29 6.3E-06 51.6 10.4 115 495-614 86-217 (514)
361 PF07519 Tannase: Tannase and 94.5 0.2 4.2E-06 54.3 9.7 132 474-614 16-156 (474)
362 KOG2112 Lysophospholipase [Lip 94.5 0.16 3.5E-06 47.4 7.7 40 570-609 89-129 (206)
363 KOG1063 RNA polymerase II elon 94.4 0.71 1.5E-05 50.1 13.2 118 194-331 529-648 (764)
364 KOG0639 Transducin-like enhanc 94.4 0.47 1E-05 49.5 11.4 145 86-262 507-652 (705)
365 PRK02888 nitrous-oxide reducta 94.3 4.3 9.3E-05 44.8 19.3 134 219-390 213-352 (635)
366 KOG0319 WD40-repeat-containing 94.3 2.7 5.8E-05 46.2 17.3 158 145-335 20-181 (775)
367 PLN02209 serine carboxypeptida 94.3 0.16 3.6E-06 54.2 8.5 139 464-612 44-216 (437)
368 PF03959 FSH1: Serine hydrolas 94.3 0.028 6.1E-07 54.0 2.5 109 494-608 3-145 (212)
369 COG3319 Thioesterase domains o 94.3 0.093 2E-06 51.5 6.0 98 496-609 1-104 (257)
370 KOG0283 WD40 repeat-containing 94.2 1.1 2.3E-05 49.7 14.5 195 194-433 373-577 (712)
371 KOG0640 mRNA cleavage stimulat 94.2 1.5 3.2E-05 43.2 13.7 161 193-387 175-335 (430)
372 COG4782 Uncharacterized protei 94.1 0.11 2.4E-06 52.5 6.4 109 496-611 117-237 (377)
373 KOG0283 WD40 repeat-containing 93.8 2.4 5.1E-05 47.1 16.1 201 147-387 372-576 (712)
374 PF11339 DUF3141: Protein of u 93.8 0.88 1.9E-05 48.4 12.2 101 492-609 66-177 (581)
375 COG1075 LipA Predicted acetylt 93.8 0.18 4E-06 52.0 7.5 100 497-610 61-166 (336)
376 TIGR03606 non_repeat_PQQ dehyd 93.7 7.7 0.00017 41.6 19.5 112 151-265 36-166 (454)
377 KOG2984 Predicted hydrolase [G 93.6 0.086 1.9E-06 48.6 4.1 101 497-606 44-147 (277)
378 KOG4532 WD40-like repeat conta 93.6 5.5 0.00012 38.7 16.1 125 193-340 161-289 (344)
379 KOG2931 Differentiation-relate 93.6 1.7 3.7E-05 42.9 13.0 131 461-608 22-157 (326)
380 KOG0277 Peroxisomal targeting 93.5 4.2 9.2E-05 39.1 15.1 200 153-396 71-274 (311)
381 KOG4388 Hormone-sensitive lipa 93.5 0.18 4E-06 53.6 6.7 84 495-590 396-485 (880)
382 PRK02888 nitrous-oxide reducta 93.5 15 0.00032 40.7 23.8 134 165-334 215-352 (635)
383 KOG2100 Dipeptidyl aminopeptid 93.4 17 0.00037 42.0 23.2 112 299-423 337-462 (755)
384 COG3243 PhaC Poly(3-hydroxyalk 93.4 0.24 5.1E-06 51.2 7.2 90 514-611 129-220 (445)
385 KOG1520 Predicted alkaloid syn 93.2 2.2 4.8E-05 43.7 13.7 143 90-256 116-277 (376)
386 PF07995 GSDH: Glucose / Sorbo 93.2 2.5 5.4E-05 43.6 14.7 37 194-231 117-158 (331)
387 KOG2110 Uncharacterized conser 93.2 3.3 7.1E-05 41.9 14.5 141 221-389 106-250 (391)
388 KOG0641 WD40 repeat protein [G 93.1 7.7 0.00017 36.5 18.6 155 150-331 190-349 (350)
389 KOG0647 mRNA export protein (c 93.1 3.1 6.7E-05 41.0 13.9 96 243-354 27-123 (347)
390 COG3150 Predicted esterase [Ge 93.1 0.41 8.9E-06 42.9 7.3 44 555-602 42-86 (191)
391 KOG0278 Serine/threonine kinas 93.1 2.7 5.8E-05 40.3 13.0 135 221-389 165-299 (334)
392 KOG4378 Nuclear protein COP1 [ 92.9 4 8.8E-05 42.8 15.1 169 150-354 129-303 (673)
393 TIGR01849 PHB_depoly_PhaZ poly 92.9 0.58 1.3E-05 49.2 9.5 86 514-611 120-211 (406)
394 PRK13615 lipoprotein LpqB; Pro 92.8 8.7 0.00019 42.3 18.6 160 194-394 337-507 (557)
395 KOG0294 WD40 repeat-containing 92.6 4.9 0.00011 39.8 14.5 88 158-262 100-187 (362)
396 COG4814 Uncharacterized protei 92.5 0.17 3.8E-06 48.4 4.5 110 494-609 45-177 (288)
397 cd00216 PQQ_DH Dehydrogenases 92.3 20 0.00044 39.2 27.6 83 195-284 221-322 (488)
398 KOG0268 Sof1-like rRNA process 92.1 0.46 1E-05 47.6 7.0 153 194-388 191-346 (433)
399 KOG0264 Nucleosome remodeling 92.1 4.5 9.8E-05 41.8 14.2 159 149-330 234-403 (422)
400 PF03022 MRJP: Major royal jel 92.0 8.3 0.00018 38.8 16.3 121 190-334 60-216 (287)
401 KOG0313 Microtubule binding pr 92.0 16 0.00034 37.3 18.7 113 243-387 260-376 (423)
402 KOG4499 Ca2+-binding protein R 91.9 12 0.00026 35.8 21.1 135 249-404 114-257 (310)
403 KOG1214 Nidogen and related ba 91.9 3.3 7.2E-05 46.1 13.7 144 93-262 1029-1174(1289)
404 KOG4378 Nuclear protein COP1 [ 91.9 3.7 8E-05 43.1 13.3 133 150-311 172-304 (673)
405 KOG2183 Prolylcarboxypeptidase 91.8 0.31 6.8E-06 50.0 5.6 88 520-607 107-202 (492)
406 PF05096 Glu_cyclase_2: Glutam 91.6 15 0.00032 36.2 17.0 197 153-388 54-260 (264)
407 PF05057 DUF676: Putative seri 91.6 0.14 3E-06 49.4 2.9 20 573-592 77-96 (217)
408 KOG0269 WD40 repeat-containing 91.6 4.7 0.0001 44.7 14.5 150 156-334 147-297 (839)
409 KOG0771 Prolactin regulatory e 91.5 7.9 0.00017 39.8 15.2 159 147-331 189-354 (398)
410 KOG1523 Actin-related protein 91.4 13 0.00028 37.1 15.9 99 196-315 16-115 (361)
411 KOG2551 Phospholipase/carboxyh 91.3 1.2 2.6E-05 42.1 8.6 49 558-610 92-149 (230)
412 PLN02193 nitrile-specifier pro 91.2 26 0.00055 38.2 26.1 164 220-398 243-419 (470)
413 KOG0319 WD40-repeat-containing 91.2 28 0.00061 38.6 20.1 136 221-388 303-443 (775)
414 TIGR03606 non_repeat_PQQ dehyd 90.8 19 0.0004 38.7 18.0 29 79-107 20-48 (454)
415 KOG0310 Conserved WD40 repeat- 90.7 16 0.00034 38.5 16.6 149 154-335 79-227 (487)
416 PHA02713 hypothetical protein; 90.7 32 0.00069 38.4 21.6 218 151-399 300-543 (557)
417 PF02450 LCAT: Lecithin:choles 90.6 0.28 6.1E-06 51.8 4.3 81 512-607 66-159 (389)
418 PF11288 DUF3089: Protein of u 90.3 0.41 8.9E-06 45.2 4.6 91 517-609 39-138 (207)
419 KOG1009 Chromatin assembly com 90.3 2.1 4.6E-05 43.7 9.8 52 247-313 127-178 (434)
420 PF03088 Str_synth: Strictosid 90.3 1.1 2.3E-05 36.3 6.3 53 164-230 36-88 (89)
421 PF01764 Lipase_3: Lipase (cla 90.3 0.45 9.8E-06 42.0 4.7 52 555-608 47-106 (140)
422 TIGR03032 conserved hypothetic 90.2 2.5 5.5E-05 42.3 10.1 144 74-232 137-293 (335)
423 PRK13615 lipoprotein LpqB; Pro 90.0 17 0.00036 40.2 17.2 159 247-435 337-505 (557)
424 TIGR03712 acc_sec_asp2 accesso 90.0 3.8 8.2E-05 43.5 11.6 120 471-616 274-398 (511)
425 PF09910 DUF2139: Uncharacteri 89.9 13 0.00028 36.8 14.4 146 221-393 20-185 (339)
426 KOG0302 Ribosome Assembly prot 89.7 21 0.00046 36.5 16.0 138 165-329 234-376 (440)
427 PF03283 PAE: Pectinacetyleste 89.7 0.25 5.3E-06 51.4 2.8 38 555-592 137-174 (361)
428 KOG0650 WD40 repeat nucleolar 89.6 8 0.00017 41.7 13.6 124 246-398 524-648 (733)
429 KOG1920 IkappaB kinase complex 89.5 24 0.00052 41.6 18.2 60 192-263 70-129 (1265)
430 KOG4283 Transcription-coupled 89.5 23 0.0005 35.0 20.1 106 142-263 99-208 (397)
431 PRK10252 entF enterobactin syn 89.4 1.3 2.8E-05 55.0 9.4 97 496-606 1069-1169(1296)
432 TIGR03032 conserved hypothetic 89.3 26 0.00056 35.3 20.2 143 149-320 107-260 (335)
433 PHA03098 kelch-like protein; P 89.3 28 0.00061 38.5 19.0 193 220-436 310-515 (534)
434 KOG0313 Microtubule binding pr 89.2 10 0.00022 38.7 13.4 137 192-353 262-398 (423)
435 KOG0647 mRNA export protein (c 89.1 13 0.00029 36.8 13.8 99 190-313 27-126 (347)
436 PF05096 Glu_cyclase_2: Glutam 89.1 24 0.00053 34.7 21.5 176 220-432 67-261 (264)
437 PHA03098 kelch-like protein; P 89.1 41 0.00088 37.2 20.8 214 153-398 293-520 (534)
438 PHA02713 hypothetical protein; 89.0 42 0.00092 37.4 21.5 238 166-436 273-537 (557)
439 PF05787 DUF839: Bacterial pro 89.0 6.7 0.00015 43.1 13.4 40 223-266 482-523 (524)
440 TIGR03075 PQQ_enz_alc_DH PQQ-d 89.0 41 0.00089 37.2 29.9 84 194-284 237-336 (527)
441 KOG0288 WD40 repeat protein Ti 88.9 2 4.3E-05 44.0 8.4 88 162-262 360-450 (459)
442 cd00741 Lipase Lipase. Lipase 88.8 0.9 1.9E-05 40.9 5.6 35 556-592 12-46 (153)
443 KOG2111 Uncharacterized conser 88.7 28 0.0006 34.8 20.7 156 147-332 97-257 (346)
444 PF03096 Ndr: Ndr family; Int 88.6 3 6.5E-05 41.4 9.3 123 473-610 9-136 (283)
445 KOG0321 WD40 repeat-containing 88.4 15 0.00032 40.0 14.8 217 84-330 140-390 (720)
446 KOG1282 Serine carboxypeptidas 88.4 4.1 8.8E-05 43.5 10.8 139 463-611 48-216 (454)
447 COG3545 Predicted esterase of 88.3 4.1 8.9E-05 37.1 9.2 58 548-608 36-94 (181)
448 KOG1524 WD40 repeat-containing 88.0 14 0.00031 39.3 14.0 57 246-318 107-164 (737)
449 KOG0310 Conserved WD40 repeat- 87.8 24 0.00052 37.2 15.4 206 66-320 89-299 (487)
450 PF04053 Coatomer_WDAD: Coatom 87.2 21 0.00045 38.4 15.5 139 79-262 23-163 (443)
451 KOG0316 Conserved WD40 repeat- 87.1 29 0.00063 33.3 16.0 145 158-338 74-218 (307)
452 KOG1538 Uncharacterized conser 87.0 29 0.00062 38.2 15.8 56 192-259 14-69 (1081)
453 KOG1332 Vesicle coat complex C 86.8 26 0.00057 33.7 13.9 193 112-340 79-294 (299)
454 PF05787 DUF839: Bacterial pro 86.8 11 0.00023 41.6 13.2 115 249-375 355-520 (524)
455 KOG1063 RNA polymerase II elon 86.7 56 0.0012 36.2 19.2 94 302-411 269-374 (764)
456 KOG0307 Vesicle coat complex C 86.4 6.5 0.00014 45.5 11.5 159 147-330 164-326 (1049)
457 PF11768 DUF3312: Protein of u 86.4 20 0.00044 38.8 14.5 112 196-328 211-326 (545)
458 PLN02606 palmitoyl-protein thi 86.0 6.6 0.00014 39.4 10.2 102 493-606 25-130 (306)
459 KOG3975 Uncharacterized conser 86.0 11 0.00023 36.5 10.9 51 555-606 91-145 (301)
460 PF03022 MRJP: Major royal jel 85.8 27 0.00058 35.2 14.8 205 93-320 5-255 (287)
461 KOG0294 WD40 repeat-containing 85.8 41 0.00088 33.7 20.6 151 146-331 45-197 (362)
462 PF13449 Phytase-like: Esteras 85.8 45 0.00099 34.2 18.1 138 90-231 86-253 (326)
463 PF12566 DUF3748: Protein of u 85.4 5.4 0.00012 33.2 7.6 16 250-265 74-89 (122)
464 KOG0316 Conserved WD40 repeat- 85.0 37 0.0008 32.6 15.3 194 193-436 20-217 (307)
465 KOG2565 Predicted hydrolases o 85.0 4.1 9E-05 41.5 8.1 115 471-601 132-257 (469)
466 KOG0302 Ribosome Assembly prot 84.9 4.5 9.9E-05 41.0 8.3 134 73-230 244-379 (440)
467 PLN02454 triacylglycerol lipas 84.9 1.5 3.2E-05 46.0 5.2 38 555-592 209-246 (414)
468 KOG1963 WD40 repeat protein [G 84.1 8.4 0.00018 43.3 10.8 102 194-320 209-312 (792)
469 KOG4328 WD40 protein [Function 84.1 60 0.0013 34.2 18.6 151 156-336 293-453 (498)
470 PLN02633 palmitoyl protein thi 84.0 7.8 0.00017 38.9 9.6 103 492-606 23-129 (314)
471 KOG2041 WD40 repeat protein [G 83.9 6.9 0.00015 43.1 9.6 54 301-354 259-318 (1189)
472 KOG2541 Palmitoyl protein thio 83.8 7.8 0.00017 37.8 9.1 98 495-605 24-125 (296)
473 PF07995 GSDH: Glucose / Sorbo 83.5 35 0.00077 35.1 14.8 128 150-282 7-157 (331)
474 PF05935 Arylsulfotrans: Aryls 83.5 73 0.0016 34.7 19.8 88 156-262 115-208 (477)
475 PF15492 Nbas_N: Neuroblastoma 83.2 17 0.00037 35.7 11.3 70 196-283 3-75 (282)
476 KOG0295 WD40 repeat-containing 82.9 41 0.0009 34.3 14.0 61 191-262 194-254 (406)
477 KOG2919 Guanine nucleotide-bin 82.3 37 0.00081 34.1 13.2 129 223-379 135-273 (406)
478 KOG1007 WD repeat protein TSSC 82.1 55 0.0012 32.4 15.2 163 79-262 110-277 (370)
479 KOG3914 WD repeat protein WDR4 81.6 25 0.00055 36.1 12.2 163 191-392 63-226 (390)
480 PF15525 DUF4652: Domain of un 81.6 21 0.00045 32.9 10.4 88 252-343 66-158 (200)
481 KOG2321 WD40 repeat protein [G 81.5 71 0.0015 34.7 15.7 205 194-436 55-262 (703)
482 PLN02408 phospholipase A1 81.2 2.2 4.8E-05 44.0 4.8 37 556-592 182-218 (365)
483 cd00519 Lipase_3 Lipase (class 81.0 2.4 5.2E-05 41.1 4.8 51 555-607 111-167 (229)
484 COG2939 Carboxypeptidase C (ca 80.7 3.1 6.6E-05 44.4 5.7 108 475-592 87-216 (498)
485 KOG4283 Transcription-coupled 80.6 63 0.0014 32.1 20.9 103 221-341 124-229 (397)
486 PLN02571 triacylglycerol lipas 80.2 2.6 5.7E-05 44.2 5.0 38 555-592 207-244 (413)
487 KOG0299 U3 snoRNP-associated p 80.2 83 0.0018 33.1 19.5 62 348-416 378-443 (479)
488 KOG1920 IkappaB kinase complex 80.1 97 0.0021 36.9 17.4 49 156-211 82-130 (1265)
489 KOG1034 Transcriptional repres 79.0 12 0.00027 37.4 8.7 95 155-266 105-204 (385)
490 PF15492 Nbas_N: Neuroblastoma 78.5 73 0.0016 31.5 14.6 79 249-342 3-82 (282)
491 PF02089 Palm_thioest: Palmito 78.5 9.7 0.00021 37.8 8.0 104 493-606 4-114 (279)
492 PF09910 DUF2139: Uncharacteri 78.3 57 0.0012 32.5 13.0 108 322-436 75-185 (339)
493 PLN02802 triacylglycerol lipas 77.8 3.3 7.1E-05 44.4 4.9 38 555-592 311-348 (509)
494 PLN02324 triacylglycerol lipas 77.8 3.4 7.4E-05 43.3 4.9 38 555-592 196-233 (415)
495 smart00824 PKS_TE Thioesterase 77.4 8.5 0.00018 35.9 7.4 80 512-604 14-98 (212)
496 KOG0290 Conserved WD40 repeat- 77.2 81 0.0017 31.3 16.2 147 147-320 153-308 (364)
497 KOG0285 Pleiotropic regulator 77.0 91 0.002 31.8 17.1 159 149-343 156-318 (460)
498 KOG1036 Mitotic spindle checkp 76.6 72 0.0016 31.8 13.1 80 244-343 14-93 (323)
499 PLN02153 epithiospecifier prot 76.3 98 0.0021 31.9 19.3 201 221-439 50-291 (341)
500 PLN02517 phosphatidylcholine-s 76.1 2.8 6E-05 45.8 3.8 72 514-592 159-231 (642)
No 1
>PRK10115 protease 2; Provisional
Probab=100.00 E-value=5.6e-39 Score=357.71 Aligned_cols=464 Identities=12% Similarity=0.070 Sum_probs=319.3
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCCC---CCCcccCC-CCCccceeeeecCCceEEEeCC--EEEEEeCCCC----cEE
Q 006979 99 HGRLIWLESRPTEAGRGVLVKEPAKAG---DEPSDITP-KEYAVRTTAQEYGGGAFRIFGD--TVIFSNYKDQ----RLY 168 (623)
Q Consensus 99 ~~~~~~l~~~~~e~g~~~l~~~~~~~g---g~~~~l~p-~~~~~r~~~~~~g~~~~~~s~d--~l~f~~~~~~----~l~ 168 (623)
|+..||....+. .+..||+.....+ +..+.+++ ......... +..+.+.+++| .|+|....+| +|+
T Consensus 81 g~~~y~~~~~~g--~~~~~~~r~~~~~~~~~~~~~llD~n~~a~~~~~--~~l~~~~~Spdg~~la~~~d~~G~E~~~l~ 156 (686)
T PRK10115 81 NGYRYRHIYEPG--CEYAIYQRQSAFSEEWDEWETLLDANKRAAHSEF--YTLGGMAITPDNTIMALAEDFLSRRQYGIR 156 (686)
T ss_pred CCEEEEEEEcCC--CccEEEEEecCCCCCCCCCEEEEcchhhccCCCc--EEEeEEEECCCCCEEEEEecCCCcEEEEEE
Confidence 788788775543 3566775543211 12344553 221111111 22345556655 7888765554 499
Q ss_pred EEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCC--cc
Q 006979 169 KHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD--FY 246 (623)
Q Consensus 169 ~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~--~~ 246 (623)
++|+.+|...+..+... . ..+.|++||+.++|++.+... ....++|++++.++..+ .+.|..+.+ +.
T Consensus 157 v~d~~tg~~l~~~i~~~------~-~~~~w~~D~~~~~y~~~~~~~---~~~~~v~~h~lgt~~~~-d~lv~~e~~~~~~ 225 (686)
T PRK10115 157 FRNLETGNWYPELLDNV------E-PSFVWANDSWTFYYVRKHPVT---LLPYQVWRHTIGTPASQ-DELVYEEKDDTFY 225 (686)
T ss_pred EEECCCCCCCCccccCc------c-eEEEEeeCCCEEEEEEecCCC---CCCCEEEEEECCCChhH-CeEEEeeCCCCEE
Confidence 99998771113444432 2 237899999999998774311 12378999999988321 344544322 22
Q ss_pred cceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeee
Q 006979 247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWN 326 (623)
Q Consensus 247 ~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~ 326 (623)
....-+.||+++....... ..+++++++.+.... ..+.++.... + ....-..| ++.+|+.++.+....+
T Consensus 226 ~~~~~s~d~~~l~i~~~~~-----~~~~~~l~~~~~~~~-~~~~~~~~~~-~--~~~~~~~~--~~~ly~~tn~~~~~~~ 294 (686)
T PRK10115 226 VSLHKTTSKHYVVIHLASA-----TTSEVLLLDAELADA-EPFVFLPRRK-D--HEYSLDHY--QHRFYLRSNRHGKNFG 294 (686)
T ss_pred EEEEEcCCCCEEEEEEECC-----ccccEEEEECcCCCC-CceEEEECCC-C--CEEEEEeC--CCEEEEEEcCCCCCce
Confidence 2223345999987444332 245677777432211 1222332222 1 11111122 2347877876556778
Q ss_pred EEEEecC-CCeEEEEeeccc--ccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCc-c
Q 006979 327 LHKWIES-NNEVLAIYSLDA--EFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT-D 402 (623)
Q Consensus 327 L~~~d~~-~~~~~~l~~~~~--~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~-~ 402 (623)
|+++++. .++.+.|.++.. .+. .+.+ .++.|++...++|..+|+.++..++.++.|+.+.. .
T Consensus 295 l~~~~~~~~~~~~~l~~~~~~~~i~---------~~~~-----~~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~ 360 (686)
T PRK10115 295 LYRTRVRDEQQWEELIPPRENIMLE---------GFTL-----FTDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAY 360 (686)
T ss_pred EEEecCCCcccCeEEECCCCCCEEE---------EEEE-----ECCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCCce
Confidence 9988876 455666765521 222 2233 35689999999999999999988777777763221 1
Q ss_pred eEe--e--eecCCEEEEEEecCCCCCeEEEEEcCCCcceeeeeEEEeccCCCCccCCCCCCCcEEEEeecCCCCeEEEEE
Q 006979 403 IDN--I--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAY 478 (623)
Q Consensus 403 v~~--~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~dg~~i~~~ 478 (623)
+.. . +.+++.+++..++...|+.+|.+++++++.+.|+ ......+++..+ .++.+++++. ||.+|+++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~------~~~~~~~~~~~~-~~e~v~~~s~-DG~~Ip~~ 432 (686)
T PRK10115 361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLK------QTEVPGFDAANY-RSEHLWITAR-DGVEVPVS 432 (686)
T ss_pred EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEE------ecCCCCcCcccc-EEEEEEEECC-CCCEEEEE
Confidence 221 2 3556789999999999999999999988755544 222223555555 8999999998 99999996
Q ss_pred EEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHH
Q 006979 479 YYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDC 558 (623)
Q Consensus 479 l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~ 558 (623)
+..+++. + .+++.|+||++||||+....+.|+...+.|+++||+|+.+|+|||+|||++|.++....++..+++|+
T Consensus 433 l~~~~~~-~---~~~~~P~ll~~hGg~~~~~~p~f~~~~~~l~~rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~ 508 (686)
T PRK10115 433 LVYHRKH-F---RKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDY 508 (686)
T ss_pred EEEECCC-C---CCCCCCEEEEEECCCCCCCCCCccHHHHHHHHCCcEEEEEEcCCCCccCHHHHHhhhhhcCCCcHHHH
Confidence 5554431 1 14567999999999999999999999999999999999999999999999999988888899999999
Q ss_pred HHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHHhh
Q 006979 559 CSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVIIS 614 (623)
Q Consensus 559 ~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~~ 614 (623)
++|++||+++|++|++||+|+|+|+||+++++++ .+|++|+|+|+.+|++||..++
T Consensus 509 ~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~D~~~~~ 565 (686)
T PRK10115 509 LDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTM 565 (686)
T ss_pred HHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCchhHhhhc
Confidence 9999999999999999999999999999999999 6799999999999999999764
No 2
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-35 Score=325.87 Aligned_cols=479 Identities=23% Similarity=0.282 Sum_probs=317.6
Q ss_pred CHHHHhccCCccCceEEcC-CCcEEEEeecC---CCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC
Q 006979 80 TADVVSGASKRLGGTAVDG-HGRLIWLESRP---TEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD 155 (623)
Q Consensus 80 t~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~---~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d 155 (623)
+++.+.. -..+.++.++| ++.++++...- ....+..+|..+.. ..+.++.. .+.....++++
T Consensus 5 ~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~----------~~~~~~~~spd 70 (620)
T COG1506 5 DAEDLLA-LARVSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGK---TVRLLTFG----------GGVSELRWSPD 70 (620)
T ss_pred CHHHHHh-hhcccCcccCCCCceeEEeeccccccccccccceEEEecc---cccccccC----------CcccccccCCC
Confidence 3444443 24567888888 88888887541 12233445543211 11112221 11222233333
Q ss_pred --EEEEEeCC---CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccC----CC-----------
Q 006979 156 --TVIFSNYK---DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRR----QD----------- 215 (623)
Q Consensus 156 --~l~f~~~~---~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~----~~----------- 215 (623)
.++|.... ..++|+++.+ + .++.. .....+..|+|+|+.+++...... ..
T Consensus 71 g~~~~~~~~~~~~~~~l~l~~~~-g-----~~~~~----~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (620)
T COG1506 71 GSVLAFVSTDGGRVAQLYLVDVG-G-----LITKT----AFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVW 140 (620)
T ss_pred CCEEEEEeccCCCcceEEEEecC-C-----ceeee----ecccccceeCCCCCeEEEEecccccccCCceeeeeccccee
Confidence 56666522 2358888765 2 11111 223456789999999988322110 00
Q ss_pred --CC-CceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEE
Q 006979 216 --AL-NSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV 292 (623)
Q Consensus 216 --~~-~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~ 292 (623)
.. .....+|++|..+ . ...+..+.......+|.+|++.++.+......-||.. ..++.....+ ....+
T Consensus 141 ~~~~g~~~~~l~~~d~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~ 211 (620)
T COG1506 141 FDGRGGERSDLYVVDIES-K---LIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVT-NLYVLIEGNG----ELESL 211 (620)
T ss_pred ecCCCCcccceEEEccCc-c---cccccCCCCceeeeeeCCCCceeEEeeeccccCCceE-eeEEEecCCC----ceEEE
Confidence 01 1356788888765 3 3444444444555778888888887775553234432 2233322222 33344
Q ss_pred cCCCCCccccCcCceeCCCCc-EEEEEeCCC-Ce---eeEEEEecCCCeEEEEe-ecccccccccccccCcceeEEeecC
Q 006979 293 AGFDPTIVESPTEPKWSSKGE-LFFVTDRKN-GF---WNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHG 366 (623)
Q Consensus 293 ~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~-g~---~~L~~~d~~~~~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~s~ 366 (623)
.... ..+..+.|.+||+ +++...... +. ..++.++...++..... ..+ . ....|... .. .
T Consensus 212 ~~~~----~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~-~~~~~~~~---~~-~---- 277 (620)
T COG1506 212 TPGE----GSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSSGD-D-TRGAWAVE---GG-L---- 277 (620)
T ss_pred cCCC----ceeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccccccceeeccCC-c-ccCcHHhc---cc-c----
Confidence 4443 4677899999999 777766522 21 23445542333333211 111 0 01111110 01 2
Q ss_pred CCCEEEEEEEE-CCeEEEEEEeCCCCceeecccCCcceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCcceeeeeEEEe
Q 006979 367 EKNLIACSYRQ-NGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVW 445 (623)
Q Consensus 367 ~~~~l~~~~~~-~g~~~L~~~d~~~~~~~~lt~~~~~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~lt~~~~~ 445 (623)
++..+++...+ .|...++..+..++....+..+...+..++.+++.+++..+++..|+++|+++. ++..+++
T Consensus 278 ~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~s~~~~p~~i~~~~~--~~~~~~~----- 350 (620)
T COG1506 278 DGDGLLFIATDGGGSSPLFRVDDLGGGVEGLSGDDGGVPGFDVDGRKLALAYSSPTEPPEIYLYDR--GEEAKLT----- 350 (620)
T ss_pred CCCcEEEEEecCCCceEEEEEeccCCceeeecCCCceEEEEeeCCCEEEEEecCCCCccceEEEcC--CCceEEe-----
Confidence 56667766665 777888888766666666666656677777799999999999999999999987 3333322
Q ss_pred ccCCCCccCCCCCCCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCce
Q 006979 446 SSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGW 525 (623)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~ 525 (623)
..+ ...+....+.+|+.+++++. ||.+|++|++.|.+ +++ .+++|+||++||||.+.....+....|.|+++||
T Consensus 351 ~~~-~~~~~~~~~~~~e~~~~~~~-dG~~i~~~l~~P~~--~~~--~k~yP~i~~~hGGP~~~~~~~~~~~~q~~~~~G~ 424 (620)
T COG1506 351 SSN-NSGLKKVKLAEPEPVTYKSN-DGETIHGWLYKPPG--FDP--RKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGY 424 (620)
T ss_pred ecc-cccccccccCCceEEEEEcC-CCCEEEEEEecCCC--CCC--CCCCCEEEEeCCCCccccccccchhhHHHhcCCe
Confidence 222 23455577889999999998 99999999999988 444 6679999999999998888889999999999999
Q ss_pred EEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCCceeEEEecc
Q 006979 526 AFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLY 605 (623)
Q Consensus 526 ~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v~~~ 605 (623)
+|+.+|||||+|||++|.+...++||..+.+|+++++++|.+++.+|++||+|+|+||||||+++++++.+.|+|+|+.+
T Consensus 425 ~V~~~n~RGS~GyG~~F~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~~f~a~~~~~ 504 (620)
T COG1506 425 AVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTPRFKAAVAVA 504 (620)
T ss_pred EEEEeCCCCCCccHHHHHHhhhhccCCccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCchhheEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999997766999999999
Q ss_pred cCCCHHHh-hhhcc
Q 006979 606 GVSIPVII-SEELW 618 (623)
Q Consensus 606 g~~d~~~~-~~~~~ 618 (623)
|++|+..+ ...+.
T Consensus 505 ~~~~~~~~~~~~~~ 518 (620)
T COG1506 505 GGVDWLLYFGESTE 518 (620)
T ss_pred Ccchhhhhccccch
Confidence 98777654 33344
No 3
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-33 Score=284.12 Aligned_cols=451 Identities=18% Similarity=0.222 Sum_probs=299.5
Q ss_pred ceeeeecCCceEEEeCC--EEEEEeCCCCcEEEEeCCCCCC--CceecCCC--CCCCCeeecceeeCCC-CCEEEEEEec
Q 006979 139 RTTAQEYGGGAFRIFGD--TVIFSNYKDQRLYKHSIDSKDS--SPLPITPD--YGEPLVSYADGIFDPR-FNRYVTVRED 211 (623)
Q Consensus 139 r~~~~~~g~~~~~~s~d--~l~f~~~~~~~l~~~d~~~g~~--~~~~Lt~~--~~~~~~~~~d~~~sPd-G~~l~~v~~~ 211 (623)
|.|....|+.+|.+... ..+|.... .||-.. ++|+. ...++++. ...+..--.||+.+|. +.+|+|++.
T Consensus 145 RkR~~~~GItsYe~hk~sg~~lF~~~s--~l~~c~-d~g~~~~t~~p~~p~~v~t~~t~~~~dP~lcP~~~~fia~i~~- 220 (867)
T KOG2281|consen 145 RKRLGVTGITSYEIHKGSGKFLFQANS--GLYHCS-DGGPQGFTVSPLTPLPVKTSPTSTRMDPKLCPADPDFIAYIKV- 220 (867)
T ss_pred HhhhceeeeeeEEEEcCCccEEEEecC--Cccccc-cCCCcccccCCCCCccccCCCCCCccCcccCCCCccceeeeeh-
Confidence 55555678888888644 56776542 255332 12210 12222222 0112223357888875 899999876
Q ss_pred cCCCCCCceeEEEEEEcCCCCcccceecccC----------------C--------CcccceeeCCCC----CEEEEEEe
Q 006979 212 RRQDALNSTTEIVAIALNGQNIQEPKVLVSG----------------S--------DFYAFPRMDPRG----ERMAWIEW 263 (623)
Q Consensus 212 ~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~----------------~--------~~~~~p~wSPDG----~~la~~~~ 263 (623)
..||+.++.++. .++|+.. + +-+.+--|||-. .+|+|...
T Consensus 221 ---------~dl~V~n~~~~~---ekrlt~~h~g~sn~~dd~~saGVasyv~QEEfdR~~GyWW~p~s~~~~~rIlYeeV 288 (867)
T KOG2281|consen 221 ---------CDLWVLNILTGE---EKRLTYIHNGSSNSKDDAISAGVASYVVQEEFDRFEGYWWSPPSGLKILRILYEEV 288 (867)
T ss_pred ---------hhhhhhhhhhch---hhceeeeeccccccccchhhcCcchHHHHHHHHhhcceeecCCCCCceEEEEeeec
Confidence 568888887776 4444321 0 113345599633 56777776
Q ss_pred cCCCC-------------------------CCCceEEEEEEecCC--Cc---eeeeEEEcCCC--CCccccCcCceeCCC
Q 006979 264 HHPNM-------------------------PWDKAELWVGYISEN--GD---VYKRVCVAGFD--PTIVESPTEPKWSSK 311 (623)
Q Consensus 264 ~~~~~-------------------------p~~~~~L~v~d~~~~--~~---~~~~~~~~~~~--~~~~~~~~~~~ws~D 311 (623)
|++.+ ++....|-++.+..+ +. +..+.++-... -.|++++.++.|.||
T Consensus 289 desev~V~h~~s~~~~~~~~d~~rYPrtGt~Nak~~Lkmv~~~~~~~gk~~~v~~kdlv~~~~~~f~~~EYI~Ragwtpd 368 (867)
T KOG2281|consen 289 DESEVEVIHVPSPVLGDRRVDSYRYPRTGTKNAKSTLKMVEFENDAEGKIYDVPLKDLVQPFHCLFEDVEYIARAGWTPD 368 (867)
T ss_pred ChhheEEEeccCcccCCCccccccCCcCCCCCceeeEEEEEEeeccccceeccchhhcccccccccccceeeeeccccCC
Confidence 66521 234455555554432 11 11111111111 134578899999999
Q ss_pred CcEEEE--EeCCCCeeeEEEEecCCCeE---------------------EEEeecccccccccccccCcceeEEeecC--
Q 006979 312 GELFFV--TDRKNGFWNLHKWIESNNEV---------------------LAIYSLDAEFSRPLWVFGINSYEIIQSHG-- 366 (623)
Q Consensus 312 G~l~~~--~~~~~g~~~L~~~d~~~~~~---------------------~~l~~~~~~~~~~~w~~~~~~~~~l~~s~-- 366 (623)
|+.+|+ -++++-+-+|..++++.... ..+..+ ....|..-.+-+.+++.++
T Consensus 369 gkyvwvq~LdR~Q~~l~iilip~~~f~~~~dn~~~~~~~~~~v~~~~~~~viyee----~sd~winiHd~f~~~~~~~~e 444 (867)
T KOG2281|consen 369 GKYVWVQVLDRSQQRLQIILIPPTLFIPKEDNLQLRTDLNMGVPDDVSPEVIYEE----PSDGWINIHDIFHPLPQSTHE 444 (867)
T ss_pred CcEEEEEEecCCcceeEEEEECHHHcCCccccHhhhhhhhhcCCcCCCcceEEec----CCCceEEhhhcccccccCCcc
Confidence 994433 35534455666776644321 112222 2335766666666665443
Q ss_pred CCCEEEEEEEECCeEEEEEEeCCC----------------------CceeecccCCcceE---ee--eecCCEEEEEEe-
Q 006979 367 EKNLIACSYRQNGRSYLGILDDFG----------------------HSLSLLDIPFTDID---NI--TLGNDCLFVEGA- 418 (623)
Q Consensus 367 ~~~~l~~~~~~~g~~~L~~~d~~~----------------------~~~~~lt~~~~~v~---~~--~~~~~~~~~~~~- 418 (623)
+.-.++|++++.+..|||++.... ++...|+.++|.|. ++ +...+.+||++.
T Consensus 445 ~~~~fi~asE~~~Frhly~its~lk~ng~~~s~~~~p~~~d~~c~i~ee~altSgeweVl~r~Gi~VdE~~~LVYf~gt~ 524 (867)
T KOG2281|consen 445 ASYPFIWASEETGFRHLYLITSLLKPNGYCLSLGSAPLDQDFKCRIKEEIALTSGEWEVLARHGIWVDEVRKLVYFVGTK 524 (867)
T ss_pred ceeeEEEecccccceEEEEEEeecccCCCcccccCCcccccccCcchhheeecccceeehhhcCeeecccceEEEEEccC
Confidence 223588999999999999985332 22335666666542 22 566778888886
Q ss_pred cCCCCCeEEEEEcC-CCcceeeeeEE---------------------------EeccC--C-C---------------Cc
Q 006979 419 SGVEPSSVAKVTLD-DHKLKAVDFKV---------------------------VWSSS--P-D---------------TL 452 (623)
Q Consensus 419 s~~~~~~ly~~~l~-~~~~~~lt~~~---------------------------~~~~~--~-~---------------~~ 452 (623)
+...+.+||++.+. .|+..+||..- .+... + . ..
T Consensus 525 d~PlE~hLyvvsye~~g~~~rlt~~g~sh~~~l~~~~d~fv~~~~sv~sP~cv~~y~ls~~~~~~l~~q~~~~~~l~~~~ 604 (867)
T KOG2281|consen 525 DTPLEHHLYVVSYENPGEIARLTEPGYSHSCELDQQCDHFVSYYSSVGSPPCVSLYSLSWPENDPLPKQVSFWAILVSGA 604 (867)
T ss_pred CCCceeeEEEEEEecCCceeeccCCCcccchhhhhhhhhHhhhhhcCCCCceEEEEeccCCccCcccchhhHHHHHHhcC
Confidence 66677899999998 68888877610 00000 0 0 00
Q ss_pred cCCCCCCCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC-cCC----HHhHHHHcCceEE
Q 006979 453 KYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILN----LSIQYWTSRGWAF 527 (623)
Q Consensus 453 ~~~~~~~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~-~~~----~~~~~~a~~G~~v 527 (623)
..+-++..|+-+.|.++ .|..+++.+|+|.+ +++ ++++|+++++||||..+..+ .|. ....+|+++||+|
T Consensus 605 ~~~Pdy~p~eif~fqs~-tg~~lYgmiyKPhn--~~p--gkkYptvl~VYGGP~VQlVnnsfkgi~ylR~~~LaslGy~V 679 (867)
T KOG2281|consen 605 PPPPDYVPPEIFSFQSK-TGLTLYGMIYKPHN--FQP--GKKYPTVLNVYGGPGVQLVNNSFKGIQYLRFCRLASLGYVV 679 (867)
T ss_pred CCCCccCChhheeeecC-CCcEEEEEEEcccc--CCC--CCCCceEEEEcCCCceEEeeccccceehhhhhhhhhcceEE
Confidence 11122334566788887 89999999999998 665 89999999999999877643 332 4678899999999
Q ss_pred EEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhC-CCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecc
Q 006979 528 VDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLY 605 (623)
Q Consensus 528 ~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~-~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~ 605 (623)
+.+|.|||--.|..|...+..++|..+++|.+.++++|+++ |++|.+||+|.|||||||++++++ ++|++|+++|+.+
T Consensus 680 v~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSlm~L~~~P~IfrvAIAGa 759 (867)
T KOG2281|consen 680 VFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLAQYPNIFRVAIAGA 759 (867)
T ss_pred EEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHHHHHhhcCcceeeEEeccC
Confidence 99999999999999999999999999999999999999998 489999999999999999999999 8999999999999
Q ss_pred cCCCHHHhh
Q 006979 606 GVSIPVIIS 614 (623)
Q Consensus 606 g~~d~~~~~ 614 (623)
|++||..|.
T Consensus 760 pVT~W~~YD 768 (867)
T KOG2281|consen 760 PVTDWRLYD 768 (867)
T ss_pred cceeeeeec
Confidence 999997663
No 4
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=100.00 E-value=5.8e-29 Score=258.99 Aligned_cols=455 Identities=13% Similarity=0.099 Sum_probs=320.1
Q ss_pred ecCCCCCceEEEEcCCCCCCC-CcccCCCCCccceeeee-cCCceEEEeCC--EEEEEeCCCC----cEEEEeCCCCCCC
Q 006979 107 SRPTEAGRGVLVKEPAKAGDE-PSDITPKEYAVRTTAQE-YGGGAFRIFGD--TVIFSNYKDQ----RLYKHSIDSKDSS 178 (623)
Q Consensus 107 ~~~~e~g~~~l~~~~~~~gg~-~~~l~p~~~~~r~~~~~-~g~~~~~~s~d--~l~f~~~~~~----~l~~~d~~~g~~~ 178 (623)
.+-.++..+.++...+..|+. .+.|++. +.+..-++ |..+.+.+++| .++++.+..| .|.+.|+.+|...
T Consensus 91 ~r~~~g~~y~~~~R~~~~g~~~eevlLD~--n~~A~g~~f~~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~ 168 (682)
T COG1770 91 SRTEEGKEYPIYCRQPDEGGEGEEVLLDV--NKEAEGHDFFSLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEEL 168 (682)
T ss_pred EEecCCCcceeEEeccCCCCCceeEeecc--hhccCcccceeeeeeeeCCCCceEEEEEecccccEEEEEEEeccccccc
Confidence 334446777776664443434 4444442 22222223 23456666666 5666644433 2667788776222
Q ss_pred ceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceeccc--CCCcccceeeCCCCC
Q 006979 179 PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS--GSDFYAFPRMDPRGE 256 (623)
Q Consensus 179 ~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~--~~~~~~~p~wSPDG~ 256 (623)
+..++. -...+.|.+|++.++|++.+....| ..||+..+.+...+ -+.+.+ +..|.....=|-+.+
T Consensus 169 ~d~i~~-------~~~~~~Wa~d~~~lfYt~~d~~~rp----~kv~~h~~gt~~~~-d~lvyeE~d~~f~~~v~~s~s~~ 236 (682)
T COG1770 169 PDEITN-------TSGSFAWAADGKTLFYTRLDENHRP----DKVWRHRLGTPGSS-DELVYEEKDDRFFLSVGRSRSEA 236 (682)
T ss_pred chhhcc-------cccceEEecCCCeEEEEEEcCCCCc----ceEEEEecCCCCCc-ceEEEEcCCCcEEEEeeeccCCc
Confidence 223332 2456889999999999988754332 78999888772111 344543 345666666788888
Q ss_pred EEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCC--CCc-EEEEEeCCCC-eeeEEEEec
Q 006979 257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS--KGE-LFFVTDRKNG-FWNLHKWIE 332 (623)
Q Consensus 257 ~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~--DG~-l~~~~~~~~g-~~~L~~~d~ 332 (623)
+|+....++ ..+++++++.+..+. ..+.+.+... + ..... -|. +|+.++. .| .+.|++...
T Consensus 237 yi~i~~~~~-----~tsE~~ll~a~~p~~-~p~vv~pr~~-g-------~eY~~eh~~d~f~i~sN~-~gknf~l~~ap~ 301 (682)
T COG1770 237 YIVISLGSH-----ITSEVRLLDADDPEA-EPKVVLPREN-G-------VEYSVEHGGDRFYILSNA-DGKNFKLVRAPV 301 (682)
T ss_pred eEEEEcCCC-----cceeEEEEecCCCCC-ceEEEEEcCC-C-------cEEeeeecCcEEEEEecC-CCcceEEEEccC
Confidence 887655344 478999999887643 1233333222 1 12221 245 6666776 45 677876544
Q ss_pred --CCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCcceE-ee---
Q 006979 333 --SNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDID-NI--- 406 (623)
Q Consensus 333 --~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~~v~-~~--- 406 (623)
....++.+.+......- .++.. -.++|++..++.|..+|++.+..+++...|..+..... .+
T Consensus 302 ~~~~~~w~~~I~h~~~~~l-------~~~~~-----f~~~lVl~eR~~glp~v~v~~~~~~~~~~i~f~~~ay~~~l~~~ 369 (682)
T COG1770 302 SADKSNWRELIPHREDVRL-------EGVDL-----FADHLVLLERQEGLPRVVVRDRKTGEERGIAFDDEAYSAGLSGN 369 (682)
T ss_pred CCChhcCeeeeccCCCcee-------eeeee-----eccEEEEEecccCCceEEEEecCCCceeeEEecchhhhccccCC
Confidence 22345666654333221 12223 35788888889999999999998888887776543321 11
Q ss_pred -eecCCEEEEEEecCCCCCeEEEEEcCCCcceeeeeEEEeccCCCCccCCCCCCCcEEEEeecCCCCeEEEEEEEcCCCC
Q 006979 407 -TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNP 485 (623)
Q Consensus 407 -~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~dg~~i~~~l~~P~~~ 485 (623)
..+..++.+..++.++|.++|-+|+.+++.+.|.+..+.. .++++.. ..+.+..+.. ||..|+..+..-++
T Consensus 370 ~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er~~LkqqeV~~-----g~dp~~Y-~s~riwa~a~-dgv~VPVSLvyrkd- 441 (682)
T COG1770 370 PEFDSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQEVPG-----GFDPEDY-VSRRIWATAD-DGVQVPVSLVYRKD- 441 (682)
T ss_pred CCCCCccEEEEeecccccceeEEeeccCCcEEEEEeccCCC-----CCChhHe-EEEEEEEEcC-CCcEeeEEEEEecc-
Confidence 5578889999999999999999999999977766444322 2455443 5577877776 99999998777765
Q ss_pred CCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHH
Q 006979 486 IYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFL 565 (623)
Q Consensus 486 ~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l 565 (623)
++. .++.|++|+.||..+....+.|+...--|.+|||+....+.||++.-|+.|.+.....-....+.|+++|+++|
T Consensus 442 -~~~--~g~~p~lLygYGaYG~s~~p~Fs~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~L 518 (682)
T COG1770 442 -TKL--DGSAPLLLYGYGAYGISMDPSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHL 518 (682)
T ss_pred -cCC--CCCCcEEEEEeccccccCCcCcccceeeeecCceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHH
Confidence 222 67789999999998888889999888889999999999999999999999999888777788899999999999
Q ss_pred HhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHHh
Q 006979 566 VGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVII 613 (623)
Q Consensus 566 ~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~ 613 (623)
+++++.++++|+++|+|+||.++.+++ ..|++|+++|+..|++|...-
T Consensus 519 v~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDvltT 567 (682)
T COG1770 519 VKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTT 567 (682)
T ss_pred HHcCcCCccceEEeccCchhHHHHHHHhhChhhhhheeecCCccchhhh
Confidence 999999999999999999999999999 889999999999999998753
No 5
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-25 Score=251.42 Aligned_cols=406 Identities=19% Similarity=0.250 Sum_probs=249.2
Q ss_pred ecceeeCCCCCEEEEEEeccCC-CCCCceeEEEEEEcCCCCcccceecccCCCc---------ccceeeCCCCCEEEEEE
Q 006979 193 YADGIFDPRFNRYVTVREDRRQ-DALNSTTEIVAIALNGQNIQEPKVLVSGSDF---------YAFPRMDPRGERMAWIE 262 (623)
Q Consensus 193 ~~d~~~sPdG~~l~~v~~~~~~-~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~---------~~~p~wSPDG~~la~~~ 262 (623)
..-..|||.|+.++|+.+++-. ..........+++ +++. -.......|. ...-.|||||.+++|..
T Consensus 150 ~~~~~wsp~~~~l~yv~~~niy~~~~~~~~~~~~~~-~~~~---~~i~ng~~Dw~yeeEv~~~~~a~wwsp~g~~la~~~ 225 (755)
T KOG2100|consen 150 IQYASWSPLGNDLAYVLHNNIYYQSSEEDEDVRIVS-NGGE---DVIFNGKPDWIYEEEVLSSDSAIWWSPDGDRLAYAS 225 (755)
T ss_pred eEEEEEcCCCCEEEEEEecccccccCcCCCceEEEe-cCCC---ceEEcCCCCceeehhhcccCccceeCCCCceeEEEE
Confidence 4456799999999999874311 1000011111111 1111 0111111221 12234999999999987
Q ss_pred ecCCCC---------------------------CCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEE
Q 006979 263 WHHPNM---------------------------PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF 315 (623)
Q Consensus 263 ~~~~~~---------------------------p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~ 315 (623)
.+...+ |.....|++.+......+. .......+.-..++....|..+.++.
T Consensus 226 ~~dt~V~~~~~~~~~~~~~yp~~~~~~ypk~g~~np~v~l~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~W~~~~~~~ 303 (755)
T KOG2100|consen 226 FNDTKVETINLPGYTDDDQYPKSTNFHYPKAGAPNPAVSLFVVDLHDPPRLG--IPPPTNQRSGEYYVTNVKWDTTEKVL 303 (755)
T ss_pred ecccccceEEeccccccccCcccceeecCCCCCCCCeEEEEEEeCCCceeec--cCCccccccCceEEEEEEEecCccEE
Confidence 554321 2334455555533221000 00001110001455667788776644
Q ss_pred EEE-eCCCCeeeEEEEecCCCeEEEEeecccccccc-cccccCc-ceeEEeecCCC-CEEEEEEEECC-eEEEEEEeCCC
Q 006979 316 FVT-DRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP-LWVFGIN-SYEIIQSHGEK-NLIACSYRQNG-RSYLGILDDFG 390 (623)
Q Consensus 316 ~~~-~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~-~w~~~~~-~~~~l~~s~~~-~~l~~~~~~~g-~~~L~~~d~~~ 390 (623)
++. ++.+....+-..|.. +. ..+.... ... .|..... ...+.. ++ ..+++....++ ..|+..+...+
T Consensus 304 ~~~~~r~~~~~~~~~cd~~-~~-~~~~~~~---~~~~~W~~~~~~~~~~~~---d~~~~~~~~~~~~~~~~hi~~~~~~~ 375 (755)
T KOG2100|consen 304 VVWTNREQNISVETLCDTP-GI-CRVVYEE---SSDGGWVEHQNVEPVFSS---DGSSYLKVDSVSDGGYNHIAYLKLSN 375 (755)
T ss_pred EEEEccCCCeeeeEEecCc-cc-ceeeEec---cccccccccccccceEee---cCCceeEEEeeccCCEEEEEEEEcCC
Confidence 443 432222222334433 21 1222111 112 4765544 112221 44 44555555666 88988888777
Q ss_pred C-ceeecccCCcceEee---eecCCEEEEEEecC-CCCCeEEEEEcCCCcceeeee----------EEEecc--------
Q 006979 391 H-SLSLLDIPFTDIDNI---TLGNDCLFVEGASG-VEPSSVAKVTLDDHKLKAVDF----------KVVWSS-------- 447 (623)
Q Consensus 391 ~-~~~~lt~~~~~v~~~---~~~~~~~~~~~~s~-~~~~~ly~~~l~~~~~~~lt~----------~~~~~~-------- 447 (623)
+ ..+.++.+.|.+..+ +.+.++++|..... ....++|.+++.....+.+|- ...++.
T Consensus 376 ~~~~~~lt~g~w~v~~i~~~~~~~~~i~f~~~~~~~~~~~ly~i~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~v~~ 455 (755)
T KOG2100|consen 376 GSEPRMLTSGNWEVTSILGYDKDSNRIYFDAYEEDPSERHLYSISLGSGTVESLTCSLITGPCTYLSVSFSKSAKYYVLS 455 (755)
T ss_pred CCccccccccceEEEEeccccCCCceEEEEecCCCCCceEEEEEEccccccccccccCCCCcceEEEEecCCcccEEEEE
Confidence 7 677888888876544 55677888877643 667789999887644332221 000000
Q ss_pred --CCCCc---cC------------------------CCCCCCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEE
Q 006979 448 --SPDTL---KY------------------------KSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLL 498 (623)
Q Consensus 448 --~~~~~---~~------------------------~~~~~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pli 498 (623)
.+... +. ...++..+...+.. +|...++.+..|++ +++ .+++|++
T Consensus 456 ~~gP~~p~~~~~~~~~~~~~~~~~Le~n~~~~~~~~~~~~p~~~~~~i~~--~~~~~~~~~~lP~~--~~~--~~kyPll 529 (755)
T KOG2100|consen 456 CSGPKVPDGQLTRHSSKNSKTIVVLETNEELKKTIENVALPIVEFGKIEI--DGITANAILILPPN--FDP--SKKYPLL 529 (755)
T ss_pred ccCCCCCcceeeccccccceEEEEeccChhhHHHhhcccCCcceeEEEEe--ccEEEEEEEecCCC--CCC--CCCCCEE
Confidence 00000 00 00111122222222 57788889999988 554 7799999
Q ss_pred EEecCCCCCcccC---cCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979 499 VKSHGGPTSEARG---ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575 (623)
Q Consensus 499 v~~hGg~~~~~~~---~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r 575 (623)
|.+||||.++... ..++....+..+|++|+.+|+||++++|..++..+.+++|..+++|++.+++++.+++.+|++|
T Consensus 530 v~~yGGP~sq~v~~~~~~~~~~~~~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~r 609 (755)
T KOG2100|consen 530 VVVYGGPGSQSVTSKFSVDWNEVVVSSRGFAVLQVDGRGSGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSR 609 (755)
T ss_pred EEecCCCCcceeeeeEEecHHHHhhccCCeEEEEEcCCCcCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHH
Confidence 9999999755543 3346666788999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcChHHHHHHHHh-cCC-CceeEEEecccCCCHHHhhhhccc
Q 006979 576 LCITGGSAGGYTTLAAL-AFR-DTFKAGASLYGVSIPVIISEELWS 619 (623)
Q Consensus 576 v~i~G~S~GG~~~~~~~-~~~-~~f~a~v~~~g~~d~~~~~~~~~~ 619 (623)
|+|+|+|+|||+++.++ ..+ +.|||+|+++||+|+. +.+.++.
T Consensus 610 i~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~-~yds~~t 654 (755)
T KOG2100|consen 610 VAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWL-YYDSTYT 654 (755)
T ss_pred eEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeee-eeccccc
Confidence 99999999999999999 454 8999999999999998 7666554
No 6
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.9e-24 Score=219.72 Aligned_cols=392 Identities=16% Similarity=0.163 Sum_probs=261.4
Q ss_pred ecceeeCC-CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccC--CCcccceeeCCCCCEEEEEEecCCCCC
Q 006979 193 YADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG--SDFYAFPRMDPRGERMAWIEWHHPNMP 269 (623)
Q Consensus 193 ~~d~~~sP-dG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~--~~~~~~p~wSPDG~~la~~~~~~~~~p 269 (623)
+...+|.- ||.-|.+..++... ....||...+.+.+.+.+...... ..+...-..+-+|+ +.+....+.--
T Consensus 184 ~~y~~w~~~dg~~l~~~t~~~~~----r~hkvy~h~~Gtdq~~Dvl~~~e~d~~~~vf~~~~kD~~~-~~i~si~~t~s- 257 (712)
T KOG2237|consen 184 VSYLAWAKQDGEDLLYGTEDENN----RPHKVYYHTLGTDQSEDVLLYEEKDEPKHVFISETKDSGF-YTINSISETCS- 257 (712)
T ss_pred eEeeeecccCCceeeeeeecccc----CcceEEEEecccCCCcceEEEecCCCCeEEEEEEEecCce-EEEEEeeccCC-
Confidence 33455665 78777777766543 337899998877532222222221 12233334555554 44454333210
Q ss_pred CCceEEEEEEecCCC-cee--eeEEEcCCCCCccccCcCc-eeCCCCc-EEEEEeCCCCeeeEEEEecCCC---eEEEEe
Q 006979 270 WDKAELWVGYISENG-DVY--KRVCVAGFDPTIVESPTEP-KWSSKGE-LFFVTDRKNGFWNLHKWIESNN---EVLAIY 341 (623)
Q Consensus 270 ~~~~~L~v~d~~~~~-~~~--~~~~~~~~~~~~~~~~~~~-~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~---~~~~l~ 341 (623)
....+|.+|+...- .+. ....+.+-+ -.+..- ....++. ++|..+.......+.+.+.... .++.+.
T Consensus 258 -~~~~vf~~d~~~~~~gl~~~~~~~v~~v~----~f~eh~~fi~~~~t~~~~~tn~~~p~y~l~r~~~~~~~~~~W~~v~ 332 (712)
T KOG2237|consen 258 -PVNKVFLCDLSSPSDGLELLILPRVKGVD----CFVEHYDFITNEGTEFYFLTNKDAPNYYLLRIDVKEPEESKWETVF 332 (712)
T ss_pred -ccceEEEEecccccCCcchheeeccchhh----hhhhhhhheeccCcceeeeccCCCCceeEEeeeccCccccccceee
Confidence 14478998876541 111 111111111 111111 2334566 7777776444566666665332 344555
Q ss_pred ecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEe-CCCCceeecccCCcceEee--eecCCEEEEEEe
Q 006979 342 SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD-DFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGA 418 (623)
Q Consensus 342 ~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d-~~~~~~~~lt~~~~~v~~~--~~~~~~~~~~~~ 418 (623)
.+..... ..|. .+. +++.+++....+-..-+-..+ +++..++.+..+.+.+... ..+...+.|..+
T Consensus 333 ~e~~~~v-l~~~------~~~----~~~~ll~~~~~~l~~i~q~~~~l~g~~~~~fpLpv~sv~~~~g~~~~~~~~f~~s 401 (712)
T KOG2237|consen 333 AEHEKDV-LEDV------DMV----NDNLLLVCYMSDLKHILQVRDLLDGSLLRSFPLPVGSVSGTSGDFKSSTIRFQFS 401 (712)
T ss_pred cccchhh-hhhh------hhh----cCceEEEEEecCchhhccccccccCceeeeecCCCCcccccccCCCCceEEEEEe
Confidence 4322211 1222 122 555566555443322221122 4456677777777666555 556788999999
Q ss_pred cCCCCCeEEEEEcCCCcceeeeeEEEeccCCC--CccCCCCCCCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCC
Q 006979 419 SGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPD--TLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPP 496 (623)
Q Consensus 419 s~~~~~~ly~~~l~~~~~~~lt~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~P 496 (623)
++-+|+.||.+|+..++++ ..+++.... ..++.+.+ ..+++.+++. ||..|++++..-+..+ ..++.|
T Consensus 402 S~l~P~~iy~yDl~~~~~e----~~vf~e~~~~lpg~~~s~y-~~~r~~~~Sk-DGt~VPM~Iv~kk~~k----~dg~~P 471 (712)
T KOG2237|consen 402 SFLTPGSIYDYDLANGKPE----PSVFREITVVLPGFDASDY-VVERIEVSSK-DGTKVPMFIVYKKDIK----LDGSKP 471 (712)
T ss_pred ccCCCCeEEEeeccCCCCC----CcceeeeccccCcccccce-EEEEEEEecC-CCCccceEEEEechhh----hcCCCc
Confidence 9999999999999998642 233333221 23444433 7889999998 9999999888755432 256789
Q ss_pred EEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCce
Q 006979 497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL 576 (623)
Q Consensus 497 liv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv 576 (623)
++|+.||+.+-...+.|......|..+|++.+..|.||+|++|+.|++.....-..+.++|++++++||+++|++.|+|+
T Consensus 472 ~LLygYGay~isl~p~f~~srl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia~AeyLve~gyt~~~kL 551 (712)
T KOG2237|consen 472 LLLYGYGAYGISLDPSFRASRLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIACAEYLVENGYTQPSKL 551 (712)
T ss_pred eEEEEecccceeeccccccceeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHHHHHHHHHHcCCCCccce
Confidence 99999999887778888888788889999999999999999999999988777778889999999999999999999999
Q ss_pred EEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHHhhhh
Q 006979 577 CITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVIISEE 616 (623)
Q Consensus 577 ~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~~~~ 616 (623)
+|.|+|+||.++.+++ .+|++|.|+|+..|+.|+......
T Consensus 552 ~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~ 592 (712)
T KOG2237|consen 552 AIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKD 592 (712)
T ss_pred eEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhcc
Confidence 9999999999999999 899999999999999999876543
No 7
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=99.92 E-value=3.2e-23 Score=213.50 Aligned_cols=232 Identities=19% Similarity=0.219 Sum_probs=192.2
Q ss_pred CEEEEEEEECCeEEEEEEeCCCCceeecccCCc-ceE--eeeecCCEEEEEEecCCCCCeEEEEEcCCCcceeeeeEEEe
Q 006979 369 NLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT-DID--NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVW 445 (623)
Q Consensus 369 ~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~-~v~--~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~lt~~~~~ 445 (623)
+.++...-.+-..+|.+.+..+-..+.|..+.. .+. ..+.+++.+++...+..+|+.+|++++.+++++.+
T Consensus 307 ~~~va~~l~nv~~~l~v~~~~g~~~~~v~l~~~ga~~~~~~~~~g~ev~l~~t~F~tP~~~~r~~~~~~eLe~i------ 380 (648)
T COG1505 307 DKLVAGTLDNVSGRLEVYDLKGERIEEVELPPPGALGMGSADKDGDEVFLAFTSFTTPSTLYRLDLFGGELEVI------ 380 (648)
T ss_pred CeEEeeeehhccceEEEeccCceEeeecccCCccceeeccCCCCCcEEEEEeecccCCCceEEEecCCceehhh------
Confidence 345544444555567777777655566766533 233 33667888999999999999999999999886544
Q ss_pred ccCCCCccCCCCCCCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCce
Q 006979 446 SSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGW 525 (623)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~ 525 (623)
...+ ..++.+.+ ..++....+. ||++|+.++.. ++.++ + +.|++|+.|||......+.|+.....|.++|.
T Consensus 381 k~~p-~~FDa~~~-~veQ~~atSk-DGT~IPYFiv~-K~~~~----d-~~pTll~aYGGF~vsltP~fs~~~~~WLerGg 451 (648)
T COG1505 381 REQP-VQFDADNY-EVEQFFATSK-DGTRIPYFIVR-KGAKK----D-ENPTLLYAYGGFNISLTPRFSGSRKLWLERGG 451 (648)
T ss_pred hhcc-CCcCccCc-eEEEEEEEcC-CCccccEEEEe-cCCcC----C-CCceEEEeccccccccCCccchhhHHHHhcCC
Confidence 3333 45677665 6778888887 99999999887 66331 4 67999999999988889999988899999999
Q ss_pred EEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEec
Q 006979 526 AFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASL 604 (623)
Q Consensus 526 ~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~ 604 (623)
+.+..|.||+|+||.+|+++..+.-....++|+.++++.|+++|+.-|++|+|.|+|.||.++..++ ++|++|-|+|+.
T Consensus 452 ~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~e 531 (648)
T COG1505 452 VFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCE 531 (648)
T ss_pred eEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEEeeeccChhhhCceeec
Confidence 9999999999999999999998888888899999999999999999999999999999999999999 889999999999
Q ss_pred ccCCCHHHhhh
Q 006979 605 YGVSIPVIISE 615 (623)
Q Consensus 605 ~g~~d~~~~~~ 615 (623)
+|+.||.+|..
T Consensus 532 vPllDMlRYh~ 542 (648)
T COG1505 532 VPLLDMLRYHL 542 (648)
T ss_pred cchhhhhhhcc
Confidence 99999998844
No 8
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=2.3e-21 Score=206.21 Aligned_cols=249 Identities=15% Similarity=0.143 Sum_probs=177.7
Q ss_pred CCEEEEEeCC--------CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCE--EEEEEeccCCCCCCceeEE
Q 006979 154 GDTVIFSNYK--------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNR--YVTVREDRRQDALNSTTEI 223 (623)
Q Consensus 154 ~d~l~f~~~~--------~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~--l~~v~~~~~~~~~~~~~~L 223 (623)
+.+|+|+... ..+||++|.+++ .+++||.. ......|+|||||++ ++|++.... ..+|
T Consensus 146 ~~~iayv~~~~~~~~~~~~~~l~~~d~dG~--~~~~lt~~----~~~~~sP~wSPDG~~~~~~y~S~~~g------~~~I 213 (428)
T PRK01029 146 SGKIIFSLSTTNSDTELKQGELWSVDYDGQ--NLRPLTQE----HSLSITPTWMHIGSGFPYLYVSYKLG------VPKI 213 (428)
T ss_pred cCEEEEEEeeCCcccccccceEEEEcCCCC--CceEcccC----CCCcccceEccCCCceEEEEEEccCC------CceE
Confidence 4578887532 236999999877 78999985 334467999999987 555665432 2689
Q ss_pred EEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEE--EecCCCceeeeEEEcCCCCCccc
Q 006979 224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVG--YISENGDVYKRVCVAGFDPTIVE 301 (623)
Q Consensus 224 ~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~--d~~~~~~~~~~~~~~~~~~~~~~ 301 (623)
|++++++|+ .++|+........|+|||||++|+|+.... ...++|+. +++.+..-...++..+.. .
T Consensus 214 ~~~~l~~g~---~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~-----g~~di~~~~~~~~~g~~g~~~~lt~~~~----~ 281 (428)
T PRK01029 214 FLGSLENPA---GKKILALQGNQLMPTFSPRKKLLAFISDRY-----GNPDLFIQSFSLETGAIGKPRRLLNEAF----G 281 (428)
T ss_pred EEEECCCCC---ceEeecCCCCccceEECCCCCEEEEEECCC-----CCcceeEEEeecccCCCCcceEeecCCC----C
Confidence 999999998 677765444445699999999999997332 13357775 444321101233433322 2
Q ss_pred cCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCC--CeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEEC
Q 006979 302 SPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESN--NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN 378 (623)
Q Consensus 302 ~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~--~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~ 378 (623)
....|.|+|||+ |+|.+++ .|..+||+++.++ ++.+.++........+.|++ ||+.|++....+
T Consensus 282 ~~~~p~wSPDG~~Laf~s~~-~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP------------DG~~Laf~~~~~ 348 (428)
T PRK01029 282 TQGNPSFSPDGTRLVFVSNK-DGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP------------DGKKIAFCSVIK 348 (428)
T ss_pred CcCCeEECCCCCEEEEEECC-CCCceEEEEECcccccceEEeccCCCCccceeECC------------CCCEEEEEEcCC
Confidence 346799999999 9999887 6778999988753 44667775544556677765 999999998888
Q ss_pred CeEEEEEEeCCCCceeecccCCcceE--eeeecCCEEEEEEecCCCCCeEEEEEcCCCcceeee
Q 006979 379 GRSYLGILDDFGHSLSLLDIPFTDID--NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 440 (623)
Q Consensus 379 g~~~L~~~d~~~~~~~~lt~~~~~v~--~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~lt 440 (623)
|..+|+++|+++++.++|+.....+. .++++++.++|.... .....||.+++++++.++|+
T Consensus 349 g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~-~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 349 GVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGN-SNESELYLISLITKKTRKIV 411 (428)
T ss_pred CCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECC-CCCceEEEEECCCCCEEEee
Confidence 88899999999999999986533322 237788888887654 34468999999998866654
No 9
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=3.6e-21 Score=206.62 Aligned_cols=243 Identities=14% Similarity=0.196 Sum_probs=183.8
Q ss_pred CEEEEEeCCCC------cEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 006979 155 DTVIFSNYKDQ------RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (623)
Q Consensus 155 d~l~f~~~~~~------~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl 228 (623)
.+|+|+....+ +||++|.+++ ..++|+.. ......+.|||||++|+|+...... .+||++|+
T Consensus 166 ~~iafv~~~~~~~~~~~~l~~~d~dg~--~~~~lt~~----~~~v~~p~wSpDG~~lay~s~~~g~------~~i~~~dl 233 (435)
T PRK05137 166 TRIVYVAESGPKNKRIKRLAIMDQDGA--NVRYLTDG----SSLVLTPRFSPNRQEITYMSYANGR------PRVYLLDL 233 (435)
T ss_pred CeEEEEEeeCCCCCcceEEEEECCCCC--CcEEEecC----CCCeEeeEECCCCCEEEEEEecCCC------CEEEEEEC
Confidence 47888765433 6999999876 78888875 3346679999999999998764322 67999999
Q ss_pred CCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCcee
Q 006979 229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 308 (623)
Q Consensus 229 ~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 308 (623)
.+++ .++++...+....|+|||||++|+|..... ...+||++|++++ ..+.++... .....+.|
T Consensus 234 ~~g~---~~~l~~~~g~~~~~~~SPDG~~la~~~~~~-----g~~~Iy~~d~~~~----~~~~Lt~~~----~~~~~~~~ 297 (435)
T PRK05137 234 ETGQ---RELVGNFPGMTFAPRFSPDGRKVVMSLSQG-----GNTDIYTMDLRSG----TTTRLTDSP----AIDTSPSY 297 (435)
T ss_pred CCCc---EEEeecCCCcccCcEECCCCCEEEEEEecC-----CCceEEEEECCCC----ceEEccCCC----CccCceeE
Confidence 9987 677765555556799999999999986432 2467999999876 233344433 34567999
Q ss_pred CCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEe
Q 006979 309 SSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 387 (623)
Q Consensus 309 s~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d 387 (623)
+|||+ ++|.+++ .|..+||++|+++++.++++........+.|++ +|+.|++.....+..+|+++|
T Consensus 298 spDG~~i~f~s~~-~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~Sp------------dG~~ia~~~~~~~~~~i~~~d 364 (435)
T PRK05137 298 SPDGSQIVFESDR-SGSPQLYVMNADGSNPRRISFGGGRYSTPVWSP------------RGDLIAFTKQGGGQFSIGVMK 364 (435)
T ss_pred cCCCCEEEEEECC-CCCCeEEEEECCCCCeEEeecCCCcccCeEECC------------CCCEEEEEEcCCCceEEEEEE
Confidence 99999 8898887 677899999999988888886544455566665 899999988777778999999
Q ss_pred CCCCceeecccCCcceE--eeeecCCEEEEEEecCCCC--CeEEEEEcCCCcceee
Q 006979 388 DFGHSLSLLDIPFTDID--NITLGNDCLFVEGASGVEP--SSVAKVTLDDHKLKAV 439 (623)
Q Consensus 388 ~~~~~~~~lt~~~~~v~--~~~~~~~~~~~~~~s~~~~--~~ly~~~l~~~~~~~l 439 (623)
++++..+.++.+. .+. .++++++.++|........ ..||++++++++.++|
T Consensus 365 ~~~~~~~~lt~~~-~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l 419 (435)
T PRK05137 365 PDGSGERILTSGF-LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREV 419 (435)
T ss_pred CCCCceEeccCCC-CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEc
Confidence 9888888887653 222 3388899999988655443 5899999988775443
No 10
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=8e-21 Score=202.82 Aligned_cols=243 Identities=14% Similarity=0.146 Sum_probs=180.6
Q ss_pred CEEEEEeCCC-----CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 006979 155 DTVIFSNYKD-----QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (623)
Q Consensus 155 d~l~f~~~~~-----~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~ 229 (623)
++++|+.... .+||++|.++. ..++++.. ......|+|||||++|+|+...... .+||++|++
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg~--~~~~lt~~----~~~~~~p~wSPDG~~la~~s~~~g~------~~i~i~dl~ 231 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDGY--NQFVVHRS----PQPLMSPAWSPDGSKLAYVTFESGR------SALVIQTLA 231 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCCC--CCEEeecC----CCceeeeEEcCCCCEEEEEEecCCC------cEEEEEECC
Confidence 4677775432 26999999876 67888875 3456789999999999998754322 679999999
Q ss_pred CCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeC
Q 006979 230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 309 (623)
Q Consensus 230 ~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws 309 (623)
+|+ .+.++........|.|||||++|+|+.... ...+||++|++++. .. .+.... .....+.|+
T Consensus 232 ~G~---~~~l~~~~~~~~~~~~SPDG~~La~~~~~~-----g~~~I~~~d~~tg~---~~-~lt~~~----~~~~~~~wS 295 (429)
T PRK03629 232 NGA---VRQVASFPRHNGAPAFSPDGSKLAFALSKT-----GSLNLYVMDLASGQ---IR-QVTDGR----SNNTEPTWF 295 (429)
T ss_pred CCC---eEEccCCCCCcCCeEECCCCCEEEEEEcCC-----CCcEEEEEECCCCC---EE-EccCCC----CCcCceEEC
Confidence 987 677776555566799999999999986432 23569999998762 23 333333 355789999
Q ss_pred CCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeC
Q 006979 310 SKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (623)
Q Consensus 310 ~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~ 388 (623)
|||+ ++|.+++ .+..+||.+|+++++.++++........+.|++ ||+.+++....++..+|+++|+
T Consensus 296 PDG~~I~f~s~~-~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~Sp------------DG~~Ia~~~~~~g~~~I~~~dl 362 (429)
T PRK03629 296 PDSQNLAYTSDQ-AGRPQVYKVNINGGAPQRITWEGSQNQDADVSS------------DGKFMVMVSSNGGQQHIAKQDL 362 (429)
T ss_pred CCCCEEEEEeCC-CCCceEEEEECCCCCeEEeecCCCCccCEEECC------------CCCEEEEEEccCCCceEEEEEC
Confidence 9999 8899887 677899999999888888864433333444543 8999999888888889999999
Q ss_pred CCCceeecccCCcce-EeeeecCCEEEEEEecCCCCCeEEEEEcCCCcceee
Q 006979 389 FGHSLSLLDIPFTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 439 (623)
Q Consensus 389 ~~~~~~~lt~~~~~v-~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~l 439 (623)
++++.+.|+...... ..+++|+..+++..... ....|+.++++++..++|
T Consensus 363 ~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~-~~~~l~~~~~~G~~~~~l 413 (429)
T PRK03629 363 ATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQG-MGSVLNLVSTDGRFKARL 413 (429)
T ss_pred CCCCeEEeCCCCCCCCceECCCCCEEEEEEcCC-CceEEEEEECCCCCeEEC
Confidence 999999888653222 23488898888877643 345789999987765544
No 11
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=4.1e-20 Score=198.17 Aligned_cols=242 Identities=15% Similarity=0.176 Sum_probs=177.4
Q ss_pred EEEEEeCCC-----CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 006979 156 TVIFSNYKD-----QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (623)
Q Consensus 156 ~l~f~~~~~-----~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~ 230 (623)
+++|+.... .+|+++|.++. ..++|+.. ......+.|||||++|+|+..... ..+||++|+.+
T Consensus 184 riayv~~~~~~~~~~~l~i~d~dG~--~~~~l~~~----~~~~~~p~wSPDG~~La~~s~~~g------~~~L~~~dl~t 251 (448)
T PRK04792 184 RIAYVVVNDKDKYPYQLMIADYDGY--NEQMLLRS----PEPLMSPAWSPDGRKLAYVSFENR------KAEIFVQDIYT 251 (448)
T ss_pred EEEEEEeeCCCCCceEEEEEeCCCC--CceEeecC----CCcccCceECCCCCEEEEEEecCC------CcEEEEEECCC
Confidence 566654332 25899998766 67888875 445678999999999999876432 26799999999
Q ss_pred CCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCC
Q 006979 231 QNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS 310 (623)
Q Consensus 231 g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~ 310 (623)
++ .++++........|.|||||++|+|..... ...+||++|++++. .+.++... .....+.|+|
T Consensus 252 g~---~~~lt~~~g~~~~~~wSPDG~~La~~~~~~-----g~~~Iy~~dl~tg~----~~~lt~~~----~~~~~p~wSp 315 (448)
T PRK04792 252 QV---REKVTSFPGINGAPRFSPDGKKLALVLSKD-----GQPEIYVVDIATKA----LTRITRHR----AIDTEPSWHP 315 (448)
T ss_pred CC---eEEecCCCCCcCCeeECCCCCEEEEEEeCC-----CCeEEEEEECCCCC----eEECccCC----CCccceEECC
Confidence 87 667765555556799999999999986433 25679999998762 23333332 3456899999
Q ss_pred CCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCC
Q 006979 311 KGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF 389 (623)
Q Consensus 311 DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~ 389 (623)
||+ ++|.+++ .+..+||++|+++++.+.|+........+.|++ ||+.++++....+..+||++|++
T Consensus 316 DG~~I~f~s~~-~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~Sp------------DG~~l~~~~~~~g~~~I~~~dl~ 382 (448)
T PRK04792 316 DGKSLIFTSER-GGKPQIYRVNLASGKVSRLTFEGEQNLGGSITP------------DGRSMIMVNRTNGKFNIARQDLE 382 (448)
T ss_pred CCCEEEEEECC-CCCceEEEEECCCCCEEEEecCCCCCcCeeECC------------CCCEEEEEEecCCceEEEEEECC
Confidence 999 8888877 677899999999998888874322223345554 89999998887888899999999
Q ss_pred CCceeecccCCcceE-eeeecCCEEEEEEecCCCCCeEEEEEcCCCcceee
Q 006979 390 GHSLSLLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 439 (623)
Q Consensus 390 ~~~~~~lt~~~~~v~-~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~l 439 (623)
+++.+.|+....... .++++++.++|..... ....||.++++++..++|
T Consensus 383 ~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~-g~~~l~~~~~~G~~~~~l 432 (448)
T PRK04792 383 TGAMQVLTSTRLDESPSVAPNGTMVIYSTTYQ-GKQVLAAVSIDGRFKARL 432 (448)
T ss_pred CCCeEEccCCCCCCCceECCCCCEEEEEEecC-CceEEEEEECCCCceEEC
Confidence 999988886533222 3488899988877543 345799999877665443
No 12
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=3.2e-20 Score=196.12 Aligned_cols=230 Identities=10% Similarity=0.064 Sum_probs=171.6
Q ss_pred CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCE-EEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCC
Q 006979 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNR-YVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS 243 (623)
Q Consensus 165 ~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~-l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~ 243 (623)
.+||+.|.++. .+++++.. . ....+.|||||++ ++|+...... .+||++|+.+|+ .++|+...
T Consensus 169 ~~l~~~d~dg~--~~~~~~~~----~-~~~~p~wSpDG~~~i~y~s~~~~~------~~Iyv~dl~tg~---~~~lt~~~ 232 (419)
T PRK04043 169 SNIVLADYTLT--YQKVIVKG----G-LNIFPKWANKEQTAFYYTSYGERK------PTLYKYNLYTGK---KEKIASSQ 232 (419)
T ss_pred ceEEEECCCCC--ceeEEccC----C-CeEeEEECCCCCcEEEEEEccCCC------CEEEEEECCCCc---EEEEecCC
Confidence 36999999876 67778874 2 4456999999997 5555443222 589999999998 78887665
Q ss_pred CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCC
Q 006979 244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN 322 (623)
Q Consensus 244 ~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~ 322 (623)
+....|.|||||++|+|..... ...+||+++++++ ..+.++... .....+.|+|||+ ++|.+++ .
T Consensus 233 g~~~~~~~SPDG~~la~~~~~~-----g~~~Iy~~dl~~g----~~~~LT~~~----~~d~~p~~SPDG~~I~F~Sdr-~ 298 (419)
T PRK04043 233 GMLVVSDVSKDGSKLLLTMAPK-----GQPDIYLYDTNTK----TLTQITNYP----GIDVNGNFVEDDKRIVFVSDR-L 298 (419)
T ss_pred CcEEeeEECCCCCEEEEEEccC-----CCcEEEEEECCCC----cEEEcccCC----CccCccEECCCCCEEEEEECC-C
Confidence 5566799999999999987443 3578999999876 233344333 2345789999999 9999988 7
Q ss_pred CeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEEC------CeEEEEEEeCCCCceeec
Q 006979 323 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN------GRSYLGILDDFGHSLSLL 396 (623)
Q Consensus 323 g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~------g~~~L~~~d~~~~~~~~l 396 (623)
|..+||++|+++++.++++.... ..+.|++ ||+.++++.... +..+||++|++++..++|
T Consensus 299 g~~~Iy~~dl~~g~~~rlt~~g~--~~~~~SP------------DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~L 364 (419)
T PRK04043 299 GYPNIFMKKLNSGSVEQVVFHGK--NNSSVST------------YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRL 364 (419)
T ss_pred CCceEEEEECCCCCeEeCccCCC--cCceECC------------CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEEC
Confidence 88899999999999888875321 1235554 999999888654 447999999999999999
Q ss_pred ccCCcce-EeeeecCCEEEEEEecCCCCCeEEEEEcCCCcceee
Q 006979 397 DIPFTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 439 (623)
Q Consensus 397 t~~~~~v-~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~l 439 (623)
+...... -.++++++.++|.... .....|+.+++++....+|
T Consensus 365 T~~~~~~~p~~SPDG~~I~f~~~~-~~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 365 TANGVNQFPRFSSDGGSIMFIKYL-GNQSALGIIRLNYNKSFLF 407 (419)
T ss_pred CCCCCcCCeEECCCCCEEEEEEcc-CCcEEEEEEecCCCeeEEe
Confidence 8763322 2348899999998754 4556799999988765443
No 13
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.87 E-value=4.4e-20 Score=196.36 Aligned_cols=263 Identities=14% Similarity=0.219 Sum_probs=181.5
Q ss_pred CceEEcCCCcEEEEeecCCCC---CceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC--E--EEEEeCCC
Q 006979 92 GGTAVDGHGRLIWLESRPTEA---GRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD--T--VIFSNYKD 164 (623)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~e~---g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d--~--l~f~~~~~ 164 (623)
+++.+. +.++.|+..+...+ .+..||..+.+ |+..+.++..... ..+-.|++| . ++|+...+
T Consensus 140 g~~g~~-~~~iayv~~~~~~~~~~~~~~l~~~d~d-G~~~~~lt~~~~~---------~~sP~wSPDG~~~~~~y~S~~~ 208 (428)
T PRK01029 140 GVPGIS-SGKIIFSLSTTNSDTELKQGELWSVDYD-GQNLRPLTQEHSL---------SITPTWMHIGSGFPYLYVSYKL 208 (428)
T ss_pred CCCccc-cCEEEEEEeeCCcccccccceEEEEcCC-CCCceEcccCCCC---------cccceEccCCCceEEEEEEccC
Confidence 456666 78888887654322 25689988876 3466777653311 122344444 4 55566554
Q ss_pred C--cEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE--EcCCCCcccceecc
Q 006979 165 Q--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI--ALNGQNIQEPKVLV 240 (623)
Q Consensus 165 ~--~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i--dl~~g~~~~~~~l~ 240 (623)
+ +||++++++| ..++|+.. ......+.|||||++|+|+....+. .++|+. +++++.....++++
T Consensus 209 g~~~I~~~~l~~g--~~~~lt~~----~g~~~~p~wSPDG~~Laf~s~~~g~------~di~~~~~~~~~g~~g~~~~lt 276 (428)
T PRK01029 209 GVPKIFLGSLENP--AGKKILAL----QGNQLMPTFSPRKKLLAFISDRYGN------PDLFIQSFSLETGAIGKPRRLL 276 (428)
T ss_pred CCceEEEEECCCC--CceEeecC----CCCccceEECCCCCEEEEEECCCCC------cceeEEEeecccCCCCcceEee
Confidence 3 6999999988 78888874 2223458999999999998753322 346654 55542111156777
Q ss_pred cCC-CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEE
Q 006979 241 SGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT 318 (623)
Q Consensus 241 ~~~-~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~ 318 (623)
.+. .....|.|||||++|+|++.. .+ ..+||+++++..+. ..+.++... .....|.|+|||+ |+|..
T Consensus 277 ~~~~~~~~~p~wSPDG~~Laf~s~~-~g----~~~ly~~~~~~~g~--~~~~lt~~~----~~~~~p~wSPDG~~Laf~~ 345 (428)
T PRK01029 277 NEAFGTQGNPSFSPDGTRLVFVSNK-DG----RPRIYIMQIDPEGQ--SPRLLTKKY----RNSSCPAWSPDGKKIAFCS 345 (428)
T ss_pred cCCCCCcCCeEECCCCCEEEEEECC-CC----CceEEEEECccccc--ceEEeccCC----CCccceeECCCCCEEEEEE
Confidence 543 345679999999999999743 22 45799999865321 234444433 3456899999999 88888
Q ss_pred eCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeeccc
Q 006979 319 DRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI 398 (623)
Q Consensus 319 ~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~ 398 (623)
.. .|..+|+++|+++++.++++........+.|++ |++.|+++....+...||++|+++++.++|+.
T Consensus 346 ~~-~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSp------------DG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 346 VI-KGVRQICVYDLATGRDYQLTTSPENKESPSWAI------------DSLHLVYSAGNSNESELYLISLITKKTRKIVI 412 (428)
T ss_pred cC-CCCcEEEEEECCCCCeEEccCCCCCccceEECC------------CCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 76 677899999999999988886544455677765 88999998888888999999999999988876
Q ss_pred CCc
Q 006979 399 PFT 401 (623)
Q Consensus 399 ~~~ 401 (623)
..+
T Consensus 413 ~~g 415 (428)
T PRK01029 413 GSG 415 (428)
T ss_pred CCC
Confidence 543
No 14
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.86 E-value=1.1e-19 Score=195.22 Aligned_cols=241 Identities=15% Similarity=0.197 Sum_probs=176.5
Q ss_pred EEEEEeCCC------CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 006979 156 TVIFSNYKD------QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (623)
Q Consensus 156 ~l~f~~~~~------~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~ 229 (623)
+++|+.... -+|+++|.+++ ..++++.. ......+.|||||++|+|+..+.. ..+||++|++
T Consensus 164 ~ia~v~~~~~~~~~~~~l~~~d~~g~--~~~~l~~~----~~~~~~p~wSpDG~~la~~s~~~~------~~~l~~~~l~ 231 (430)
T PRK00178 164 RILYVTAERFSVNTRYTLQRSDYDGA--RAVTLLQS----REPILSPRWSPDGKRIAYVSFEQK------RPRIFVQNLD 231 (430)
T ss_pred eEEEEEeeCCCCCcceEEEEECCCCC--CceEEecC----CCceeeeeECCCCCEEEEEEcCCC------CCEEEEEECC
Confidence 577764322 14899999876 67777764 344567899999999999876432 2579999999
Q ss_pred CCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeC
Q 006979 230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 309 (623)
Q Consensus 230 ~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws 309 (623)
+++ .++++........|+|||||++|+|..... ...+||++|++++. .+.+.... .....+.|+
T Consensus 232 ~g~---~~~l~~~~g~~~~~~~SpDG~~la~~~~~~-----g~~~Iy~~d~~~~~----~~~lt~~~----~~~~~~~~s 295 (430)
T PRK00178 232 TGR---REQITNFEGLNGAPAWSPDGSKLAFVLSKD-----GNPEIYVMDLASRQ----LSRVTNHP----AIDTEPFWG 295 (430)
T ss_pred CCC---EEEccCCCCCcCCeEECCCCCEEEEEEccC-----CCceEEEEECCCCC----eEEcccCC----CCcCCeEEC
Confidence 987 677766555556799999999999987433 24679999998762 23344333 345678999
Q ss_pred CCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeC
Q 006979 310 SKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (623)
Q Consensus 310 ~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~ 388 (623)
|||+ ++|.+++ .|..+||.+|+.+++.++++........+.|++ +++.+++....++..+|+++|+
T Consensus 296 pDg~~i~f~s~~-~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Sp------------dg~~i~~~~~~~~~~~l~~~dl 362 (430)
T PRK00178 296 KDGRTLYFTSDR-GGKPQIYKVNVNGGRAERVTFVGNYNARPRLSA------------DGKTLVMVHRQDGNFHVAAQDL 362 (430)
T ss_pred CCCCEEEEEECC-CCCceEEEEECCCCCEEEeecCCCCccceEECC------------CCCEEEEEEccCCceEEEEEEC
Confidence 9999 8898887 678899999999888888874322223344543 8999999987777788999999
Q ss_pred CCCceeecccCCcceE-eeeecCCEEEEEEecCCCCCeEEEEEcCCCccee
Q 006979 389 FGHSLSLLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKA 438 (623)
Q Consensus 389 ~~~~~~~lt~~~~~v~-~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~ 438 (623)
++++.+.|+....... .++++++.++|..... ....||.++++++..++
T Consensus 363 ~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~-g~~~l~~~~~~g~~~~~ 412 (430)
T PRK00178 363 QRGSVRILTDTSLDESPSVAPNGTMLIYATRQQ-GRGVLMLVSINGRVRLP 412 (430)
T ss_pred CCCCEEEccCCCCCCCceECCCCCEEEEEEecC-CceEEEEEECCCCceEE
Confidence 9999999886533322 3488888888887643 34579999987765433
No 15
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.86 E-value=1.1e-19 Score=194.91 Aligned_cols=242 Identities=16% Similarity=0.172 Sum_probs=177.8
Q ss_pred EEEEEeCC------CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 006979 156 TVIFSNYK------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (623)
Q Consensus 156 ~l~f~~~~------~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~ 229 (623)
+|+|+... ..+||++|.+++ .+++|+.. ......+.|||||++|+|++.... ..+||++|++
T Consensus 169 ~ia~v~~~~~~~~~~~~l~i~D~~g~--~~~~lt~~----~~~v~~p~wSpDg~~la~~s~~~~------~~~l~~~dl~ 236 (433)
T PRK04922 169 RIAYVTVSGAGGAMRYALQVADSDGY--NPQTILRS----AEPILSPAWSPDGKKLAYVSFERG------RSAIYVQDLA 236 (433)
T ss_pred eEEEEEEeCCCCCceEEEEEECCCCC--CceEeecC----CCccccccCCCCCCEEEEEecCCC------CcEEEEEECC
Confidence 56666432 125999998765 78888875 345678999999999999875432 2679999999
Q ss_pred CCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeC
Q 006979 230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 309 (623)
Q Consensus 230 ~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws 309 (623)
+++ .++++........|+|||||++|+|....+ ...+||++|++++. .+.+.... .....+.|+
T Consensus 237 ~g~---~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~-----g~~~Iy~~d~~~g~----~~~lt~~~----~~~~~~~~s 300 (433)
T PRK04922 237 TGQ---RELVASFRGINGAPSFSPDGRRLALTLSRD-----GNPEIYVMDLGSRQ----LTRLTNHF----GIDTEPTWA 300 (433)
T ss_pred CCC---EEEeccCCCCccCceECCCCCEEEEEEeCC-----CCceEEEEECCCCC----eEECccCC----CCccceEEC
Confidence 887 666765444556799999999999986443 24579999998762 23333332 334578999
Q ss_pred CCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeC
Q 006979 310 SKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (623)
Q Consensus 310 ~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~ 388 (623)
|||+ ++|.+++ .|..+||.+|..+++.++++........+.|++ +++.+++....++..+|+++|+
T Consensus 301 pDG~~l~f~sd~-~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~Sp------------DG~~Ia~~~~~~~~~~I~v~d~ 367 (433)
T PRK04922 301 PDGKSIYFTSDR-GGRPQIYRVAASGGSAERLTFQGNYNARASVSP------------DGKKIAMVHGSGGQYRIAVMDL 367 (433)
T ss_pred CCCCEEEEEECC-CCCceEEEEECCCCCeEEeecCCCCccCEEECC------------CCCEEEEEECCCCceeEEEEEC
Confidence 9999 8888887 677899999998888888874433333455654 8999999877677789999999
Q ss_pred CCCceeecccCCcceE-eeeecCCEEEEEEecCCCCCeEEEEEcCCCcceee
Q 006979 389 FGHSLSLLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 439 (623)
Q Consensus 389 ~~~~~~~lt~~~~~v~-~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~l 439 (623)
++++.+.|+.+..... .++++++.++|.... .....||.++++++..++|
T Consensus 368 ~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~-~g~~~L~~~~~~g~~~~~l 418 (433)
T PRK04922 368 STGSVRTLTPGSLDESPSFAPNGSMVLYATRE-GGRGVLAAVSTDGRVRQRL 418 (433)
T ss_pred CCCCeEECCCCCCCCCceECCCCCEEEEEEec-CCceEEEEEECCCCceEEc
Confidence 9999998886543322 348888888888765 3446899999987765444
No 16
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.86 E-value=1.5e-19 Score=193.17 Aligned_cols=240 Identities=15% Similarity=0.136 Sum_probs=175.3
Q ss_pred CEEEEEeCCC--CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 006979 155 DTVIFSNYKD--QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (623)
Q Consensus 155 d~l~f~~~~~--~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~ 232 (623)
.+++|+.... .+||++|.++. .+++++.. ......++|||||++|+|+..... ..+||++|+++++
T Consensus 164 ~~iayv~~~~~~~~L~~~D~dG~--~~~~l~~~----~~~v~~p~wSPDG~~la~~s~~~~------~~~I~~~dl~~g~ 231 (427)
T PRK02889 164 TRIAYVIKTGNRYQLQISDADGQ--NAQSALSS----PEPIISPAWSPDGTKLAYVSFESK------KPVVYVHDLATGR 231 (427)
T ss_pred cEEEEEEccCCccEEEEECCCCC--CceEeccC----CCCcccceEcCCCCEEEEEEccCC------CcEEEEEECCCCC
Confidence 4677776433 36999998765 67777764 344668999999999999875432 2579999999987
Q ss_pred cccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCC
Q 006979 233 IQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 312 (623)
Q Consensus 233 ~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG 312 (623)
.++++........|+|||||++|+|....+ ...+||++|++++. .+.+.... .....+.|+|||
T Consensus 232 ---~~~l~~~~g~~~~~~~SPDG~~la~~~~~~-----g~~~Iy~~d~~~~~----~~~lt~~~----~~~~~~~wSpDG 295 (427)
T PRK02889 232 ---RRVVANFKGSNSAPAWSPDGRTLAVALSRD-----GNSQIYTVNADGSG----LRRLTQSS----GIDTEPFFSPDG 295 (427)
T ss_pred ---EEEeecCCCCccceEECCCCCEEEEEEccC-----CCceEEEEECCCCC----cEECCCCC----CCCcCeEEcCCC
Confidence 667765445556799999999999976333 24679999987662 23333332 344678999999
Q ss_pred c-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCC
Q 006979 313 E-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH 391 (623)
Q Consensus 313 ~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~ 391 (623)
+ ++|.+++ .|..+||.++..+++.++++........+.|++ +|+.+++.+..++..+|+++|++++
T Consensus 296 ~~l~f~s~~-~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~Sp------------DG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 296 RSIYFTSDR-GGAPQIYRMPASGGAAQRVTFTGSYNTSPRISP------------DGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred CEEEEEecC-CCCcEEEEEECCCCceEEEecCCCCcCceEECC------------CCCEEEEEEccCCcEEEEEEECCCC
Confidence 9 8888887 677899999988888777774432233455554 8999999888778789999999999
Q ss_pred ceeecccCCcce-EeeeecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979 392 SLSLLDIPFTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (623)
Q Consensus 392 ~~~~lt~~~~~v-~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~ 436 (623)
+.++++...... -.++++++.++|...... ...||.+++++...
T Consensus 363 ~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g-~~~l~~~~~~g~~~ 407 (427)
T PRK02889 363 QVTALTDTTRDESPSFAPNGRYILYATQQGG-RSVLAAVSSDGRIK 407 (427)
T ss_pred CeEEccCCCCccCceECCCCCEEEEEEecCC-CEEEEEEECCCCce
Confidence 998887653221 133888999988876543 46799999866543
No 17
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.85 E-value=4.7e-19 Score=187.20 Aligned_cols=252 Identities=9% Similarity=0.053 Sum_probs=175.2
Q ss_pred EEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCE-EEEEeCC--CCcEEEEe
Q 006979 95 AVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDT-VIFSNYK--DQRLYKHS 171 (623)
Q Consensus 95 ~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~-l~f~~~~--~~~l~~~d 171 (623)
.|+ ...+|+...... .+..||..+.+ |...+.++...... -..|.++++. ++|+... ..+||++|
T Consensus 152 ~f~-~r~~~v~~~~~~--~~~~l~~~d~d-g~~~~~~~~~~~~~--------~p~wSpDG~~~i~y~s~~~~~~~Iyv~d 219 (419)
T PRK04043 152 DWM-KRKVVFSKYTGP--KKSNIVLADYT-LTYQKVIVKGGLNI--------FPKWANKEQTAFYYTSYGERKPTLYKYN 219 (419)
T ss_pred Cce-eeEEEEEEccCC--CcceEEEECCC-CCceeEEccCCCeE--------eEEECCCCCcEEEEEEccCCCCEEEEEE
Confidence 344 455666552221 35678888776 22344444322100 1234444444 6666554 35699999
Q ss_pred CCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceee
Q 006979 172 IDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRM 251 (623)
Q Consensus 172 ~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~w 251 (623)
+.++ +.++|+.. ......+.|||||++|+++..... ..+||++|+++++ .++|+........|.|
T Consensus 220 l~tg--~~~~lt~~----~g~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~dl~~g~---~~~LT~~~~~d~~p~~ 284 (419)
T PRK04043 220 LYTG--KKEKIASS----QGMLVVSDVSKDGSKLLLTMAPKG------QPDIYLYDTNTKT---LTQITNYPGIDVNGNF 284 (419)
T ss_pred CCCC--cEEEEecC----CCcEEeeEECCCCCEEEEEEccCC------CcEEEEEECCCCc---EEEcccCCCccCccEE
Confidence 9988 78888864 333445789999999999876432 2789999999988 7888876655667999
Q ss_pred CCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCC-----Cee
Q 006979 252 DPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN-----GFW 325 (623)
Q Consensus 252 SPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~-----g~~ 325 (623)
||||++|+|++ ++. ...+||++|++++. ..++... . .. .+.|+|||+ ++|++...+ +..
T Consensus 285 SPDG~~I~F~S-dr~----g~~~Iy~~dl~~g~---~~rlt~~-g----~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~ 349 (419)
T PRK04043 285 VEDDKRIVFVS-DRL----GYPNIFMKKLNSGS---VEQVVFH-G----KN--NSSVSTYKNYIVYSSRETNNEFGKNTF 349 (419)
T ss_pred CCCCCEEEEEE-CCC----CCceEEEEECCCCC---eEeCccC-C----Cc--CceECCCCCEEEEEEcCCCcccCCCCc
Confidence 99999999998 433 24679999998773 3343332 2 11 369999999 888876521 336
Q ss_pred eEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCc
Q 006979 326 NLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT 401 (623)
Q Consensus 326 ~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~ 401 (623)
+|+.+|+++++.+.|+... ....|.|++ ||+.++|+....+...|+.++++++...+|....+
T Consensus 350 ~I~v~d~~~g~~~~LT~~~-~~~~p~~SP------------DG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~g 412 (419)
T PRK04043 350 NLYLISTNSDYIRRLTANG-VNQFPRFSS------------DGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKVG 412 (419)
T ss_pred EEEEEECCCCCeEECCCCC-CcCCeEECC------------CCCEEEEEEccCCcEEEEEEecCCCeeEEeecCCC
Confidence 8999999999999998653 223466765 99999999988889999999999887777765433
No 18
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.85 E-value=7.7e-19 Score=188.60 Aligned_cols=248 Identities=15% Similarity=0.183 Sum_probs=175.1
Q ss_pred CCcEEEEeecCCC-CCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC--EEEEEeCC--CCcEEEEeCC
Q 006979 99 HGRLIWLESRPTE-AGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD--TVIFSNYK--DQRLYKHSID 173 (623)
Q Consensus 99 ~~~~~~l~~~~~e-~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d--~l~f~~~~--~~~l~~~d~~ 173 (623)
..+|.|+...... .-+..||.++.+ |+..+.++..... .....+++| .|+|.... +.+||++|+.
T Consensus 165 ~~~iafv~~~~~~~~~~~~l~~~d~d-g~~~~~lt~~~~~---------v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~ 234 (435)
T PRK05137 165 DTRIVYVAESGPKNKRIKRLAIMDQD-GANVRYLTDGSSL---------VLTPRFSPNRQEITYMSYANGRPRVYLLDLE 234 (435)
T ss_pred CCeEEEEEeeCCCCCcceEEEEECCC-CCCcEEEecCCCC---------eEeeEECCCCCEEEEEEecCCCCEEEEEECC
Confidence 5678888755321 126678888765 3345556543211 223344444 78887644 3469999999
Q ss_pred CCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCC
Q 006979 174 SKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDP 253 (623)
Q Consensus 174 ~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSP 253 (623)
++ ..++++.. ......+.|||||++|+++...... .+||++|++++. .++|+........|.|||
T Consensus 235 ~g--~~~~l~~~----~g~~~~~~~SPDG~~la~~~~~~g~------~~Iy~~d~~~~~---~~~Lt~~~~~~~~~~~sp 299 (435)
T PRK05137 235 TG--QRELVGNF----PGMTFAPRFSPDGRKVVMSLSQGGN------TDIYTMDLRSGT---TTRLTDSPAIDTSPSYSP 299 (435)
T ss_pred CC--cEEEeecC----CCcccCcEECCCCCEEEEEEecCCC------ceEEEEECCCCc---eEEccCCCCccCceeEcC
Confidence 87 67788764 2344578999999999987654322 679999999988 788887666666799999
Q ss_pred CCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEec
Q 006979 254 RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE 332 (623)
Q Consensus 254 DG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~ 332 (623)
||++|+|.+ ++.+ ..+||++|++++. ..++..+ . .....+.|+|||+ ++|.... .+..+|+.+|+
T Consensus 300 DG~~i~f~s-~~~g----~~~Iy~~d~~g~~---~~~lt~~-~----~~~~~~~~SpdG~~ia~~~~~-~~~~~i~~~d~ 365 (435)
T PRK05137 300 DGSQIVFES-DRSG----SPQLYVMNADGSN---PRRISFG-G----GRYSTPVWSPRGDLIAFTKQG-GGQFSIGVMKP 365 (435)
T ss_pred CCCEEEEEE-CCCC----CCeEEEEECCCCC---eEEeecC-C----CcccCeEECCCCCEEEEEEcC-CCceEEEEEEC
Confidence 999999987 3332 4579999987662 3333332 2 3456799999999 7777765 56678999999
Q ss_pred CCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCe---EEEEEEeCCCCceeeccc
Q 006979 333 SNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR---SYLGILDDFGHSLSLLDI 398 (623)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~---~~L~~~d~~~~~~~~lt~ 398 (623)
+++..+.++.+ .....+.|++ ||+.|+++....+. ..||++|++++..++|+.
T Consensus 366 ~~~~~~~lt~~-~~~~~p~~sp------------DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~ 421 (435)
T PRK05137 366 DGSGERILTSG-FLVEGPTWAP------------NGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVPT 421 (435)
T ss_pred CCCceEeccCC-CCCCCCeECC------------CCCEEEEEEccCCCCCcceEEEEECCCCceEEccC
Confidence 88777666543 2445566665 89999998876665 689999999988887764
No 19
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.84 E-value=1.2e-18 Score=185.99 Aligned_cols=251 Identities=11% Similarity=0.075 Sum_probs=177.1
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCC--CCcEEEEeCCCCC
Q 006979 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYK--DQRLYKHSIDSKD 176 (623)
Q Consensus 99 ~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~--~~~l~~~d~~~g~ 176 (623)
..++.|+..+..+..++.||.++.++ +..+.++..... .....|.++++.++|.... ..+||++++.+|
T Consensus 163 ~~riayv~~~~~~~~~~~l~~~d~dg-~~~~~lt~~~~~-------~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G- 233 (429)
T PRK03629 163 RTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQP-------LMSPAWSPDGSKLAYVTFESGRSALVIQTLANG- 233 (429)
T ss_pred CCeEEEEEeeCCCCcceeEEEEcCCC-CCCEEeecCCCc-------eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCC-
Confidence 46777777654444567888888662 245555543200 0112344444478877543 346999999887
Q ss_pred CCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCC
Q 006979 177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE 256 (623)
Q Consensus 177 ~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~ 256 (623)
..++|+.. ......+.|||||++|+|+...... .+||++|+++++ .++++.+......|.|||||+
T Consensus 234 -~~~~l~~~----~~~~~~~~~SPDG~~La~~~~~~g~------~~I~~~d~~tg~---~~~lt~~~~~~~~~~wSPDG~ 299 (429)
T PRK03629 234 -AVRQVASF----PRHNGAPAFSPDGSKLAFALSKTGS------LNLYVMDLASGQ---IRQVTDGRSNNTEPTWFPDSQ 299 (429)
T ss_pred -CeEEccCC----CCCcCCeEECCCCCEEEEEEcCCCC------cEEEEEECCCCC---EEEccCCCCCcCceEECCCCC
Confidence 77888764 2334578999999999998653322 469999999988 788887665667899999999
Q ss_pred EEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCC
Q 006979 257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN 335 (623)
Q Consensus 257 ~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~ 335 (623)
+|+|.+.+ .+ ..+||+++++++. ..++ .... .....+.|+|||+ ++|.... .+..+|+.+|++++
T Consensus 300 ~I~f~s~~-~g----~~~Iy~~d~~~g~---~~~l-t~~~----~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~g 365 (429)
T PRK03629 300 NLAYTSDQ-AG----RPQVYKVNINGGA---PQRI-TWEG----SQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATG 365 (429)
T ss_pred EEEEEeCC-CC----CceEEEEECCCCC---eEEe-ecCC----CCccCEEECCCCCEEEEEEcc-CCCceEEEEECCCC
Confidence 99999833 22 3479999998762 2333 3222 3445799999999 7777765 56778999999999
Q ss_pred eEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccC
Q 006979 336 EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP 399 (623)
Q Consensus 336 ~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~ 399 (623)
+.+.|+.. .....+.|++ ||+.|++.+.+.+...|++++++++..++|+..
T Consensus 366 ~~~~Lt~~-~~~~~p~~Sp------------DG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~ 416 (429)
T PRK03629 366 GVQVLTDT-FLDETPSIAP------------NGTMVIYSSSQGMGSVLNLVSTDGRFKARLPAT 416 (429)
T ss_pred CeEEeCCC-CCCCCceECC------------CCCEEEEEEcCCCceEEEEEECCCCCeEECccC
Confidence 88888743 2223566664 999999999888888899999998888888653
No 20
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.84 E-value=2.2e-18 Score=184.81 Aligned_cols=252 Identities=12% Similarity=0.114 Sum_probs=173.6
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCCCC--cEEEEeCCCCC
Q 006979 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ--RLYKHSIDSKD 176 (623)
Q Consensus 99 ~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~~~--~l~~~d~~~g~ 176 (623)
..++.|+..+..++-...|+..+.+ |...+.++.....+ ....|.++++.|+|+...++ +||++|+.++
T Consensus 182 ~~riayv~~~~~~~~~~~l~i~d~d-G~~~~~l~~~~~~~-------~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg- 252 (448)
T PRK04792 182 LTRIAYVVVNDKDKYPYQLMIADYD-GYNEQMLLRSPEPL-------MSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ- 252 (448)
T ss_pred cCEEEEEEeeCCCCCceEEEEEeCC-CCCceEeecCCCcc-------cCceECCCCCEEEEEEecCCCcEEEEEECCCC-
Confidence 3456666554433334567777655 22345555432110 11234444447888765443 5999999987
Q ss_pred CCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCC
Q 006979 177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE 256 (623)
Q Consensus 177 ~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~ 256 (623)
..++++.. ......+.|||||++|+++..... ..+||++|+++++ .++++........|.|||||+
T Consensus 253 -~~~~lt~~----~g~~~~~~wSPDG~~La~~~~~~g------~~~Iy~~dl~tg~---~~~lt~~~~~~~~p~wSpDG~ 318 (448)
T PRK04792 253 -VREKVTSF----PGINGAPRFSPDGKKLALVLSKDG------QPEIYVVDIATKA---LTRITRHRAIDTEPSWHPDGK 318 (448)
T ss_pred -CeEEecCC----CCCcCCeeECCCCCEEEEEEeCCC------CeEEEEEECCCCC---eEECccCCCCccceEECCCCC
Confidence 67778764 223346899999999999765432 2689999999988 778877655567799999999
Q ss_pred EEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCC
Q 006979 257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN 335 (623)
Q Consensus 257 ~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~ 335 (623)
+|+|.+... ...+||+++++++. ..++.... .....+.|+|||+ ++|.... .+..+|+++|++++
T Consensus 319 ~I~f~s~~~-----g~~~Iy~~dl~~g~---~~~Lt~~g-----~~~~~~~~SpDG~~l~~~~~~-~g~~~I~~~dl~~g 384 (448)
T PRK04792 319 SLIFTSERG-----GKPQIYRVNLASGK---VSRLTFEG-----EQNLGGSITPDGRSMIMVNRT-NGKFNIARQDLETG 384 (448)
T ss_pred EEEEEECCC-----CCceEEEEECCCCC---EEEEecCC-----CCCcCeeECCCCCEEEEEEec-CCceEEEEEECCCC
Confidence 999987332 24579999998762 23333222 2334689999999 7787765 67789999999999
Q ss_pred eEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCC
Q 006979 336 EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF 400 (623)
Q Consensus 336 ~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~ 400 (623)
+.+.++....+ ..|.|++ +++.|++++.++|...||+++.+++..+.++.+.
T Consensus 385 ~~~~lt~~~~d-~~ps~sp------------dG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~~~ 436 (448)
T PRK04792 385 AMQVLTSTRLD-ESPSVAP------------NGTMVIYSTTYQGKQVLAAVSIDGRFKARLPAGQ 436 (448)
T ss_pred CeEEccCCCCC-CCceECC------------CCCEEEEEEecCCceEEEEEECCCCceEECcCCC
Confidence 88877644222 2455654 8999999999899999999999888778787653
No 21
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.83 E-value=4.6e-19 Score=184.71 Aligned_cols=246 Identities=16% Similarity=0.180 Sum_probs=176.4
Q ss_pred CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCC
Q 006979 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD 244 (623)
Q Consensus 165 ~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~ 244 (623)
+.+|++|+.++ ..++|+.. ......+.|||||++|+|++. ++||+.++.++. .++|+.+..
T Consensus 23 ~~y~i~d~~~~--~~~~l~~~----~~~~~~~~~sP~g~~~~~v~~----------~nly~~~~~~~~---~~~lT~dg~ 83 (353)
T PF00930_consen 23 GDYYIYDIETG--EITPLTPP----PPKLQDAKWSPDGKYIAFVRD----------NNLYLRDLATGQ---ETQLTTDGE 83 (353)
T ss_dssp EEEEEEETTTT--EEEESS-E----ETTBSEEEE-SSSTEEEEEET----------TEEEEESSTTSE---EEESES--T
T ss_pred eeEEEEecCCC--ceEECcCC----ccccccceeecCCCeeEEEec----------CceEEEECCCCC---eEEeccccc
Confidence 45999999987 77888864 345667899999999999986 569999998887 778876431
Q ss_pred ------------------cccceeeCCCCCEEEEEEecCCCC----------------------------CCCceEEEEE
Q 006979 245 ------------------FYAFPRMDPRGERMAWIEWHHPNM----------------------------PWDKAELWVG 278 (623)
Q Consensus 245 ------------------~~~~p~wSPDG~~la~~~~~~~~~----------------------------p~~~~~L~v~ 278 (623)
......|||||++|||.+.|+..+ ++...+|+++
T Consensus 84 ~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~ 163 (353)
T PF00930_consen 84 PGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVV 163 (353)
T ss_dssp TTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEE
T ss_pred eeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEE
Confidence 112345999999999999776543 2345677888
Q ss_pred EecCCCceeeeEEEcC---CCCCccccCcCceeCCCCc-EEEEE-eCCCCeeeEEEEecCCCeEEEEeeccccccccccc
Q 006979 279 YISENGDVYKRVCVAG---FDPTIVESPTEPKWSSKGE-LFFVT-DRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWV 353 (623)
Q Consensus 279 d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ws~DG~-l~~~~-~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~ 353 (623)
+++++.. ..+... ...+ .++..+.|++|++ +++.. ++.+....|..+|+.+++.+.+..+ ....|.
T Consensus 164 ~~~~~~~---~~~~~~~~~~~~~--~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e----~~~~Wv 234 (353)
T PF00930_consen 164 DLASGKT---TELDPPNSLNPQD--YYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE----TSDGWV 234 (353)
T ss_dssp ESSSTCC---CEE---HHHHTSS--EEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE----ESSSSS
T ss_pred ECCCCcE---EEeeeccccCCCc--cCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe----cCCcce
Confidence 8876632 122211 1112 6788999999998 66554 5545567888999988887777644 445676
Q ss_pred ccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCcceEee---eecCCEEEEEEec-CCCCCeEEEE
Q 006979 354 FGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI---TLGNDCLFVEGAS-GVEPSSVAKV 429 (623)
Q Consensus 354 ~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~~v~~~---~~~~~~~~~~~~s-~~~~~~ly~~ 429 (623)
.......++ .++++.+++.++++|..|||+++.+++..++||.+.+.|..+ +.+++.+||++.. .....+||++
T Consensus 235 ~~~~~~~~~--~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v 312 (353)
T PF00930_consen 235 DVYDPPHFL--GPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRV 312 (353)
T ss_dssp SSSSEEEE---TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEE
T ss_pred eeecccccc--cCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEE
Confidence 555555655 128889999999999999999999999999999998887544 7889999999874 4466799999
Q ss_pred EcC-CCcceeee
Q 006979 430 TLD-DHKLKAVD 440 (623)
Q Consensus 430 ~l~-~~~~~~lt 440 (623)
+++ ++++++||
T Consensus 313 ~~~~~~~~~~LT 324 (353)
T PF00930_consen 313 SLDSGGEPKCLT 324 (353)
T ss_dssp ETTETTEEEESS
T ss_pred EeCCCCCeEecc
Confidence 999 88876665
No 22
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.83 E-value=5.4e-18 Score=182.16 Aligned_cols=250 Identities=13% Similarity=0.164 Sum_probs=176.0
Q ss_pred CCcEEEEeec-CCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEe--CCEEEEEeCCC--CcEEEEeCC
Q 006979 99 HGRLIWLESR-PTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF--GDTVIFSNYKD--QRLYKHSID 173 (623)
Q Consensus 99 ~~~~~~l~~~-~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s--~d~l~f~~~~~--~~l~~~d~~ 173 (623)
..++.|+... ..+++++.|+..+.+ |+..+.++..... .....++ ++.|+|....+ .+||+++++
T Consensus 162 ~~~ia~v~~~~~~~~~~~~l~~~d~~-g~~~~~l~~~~~~---------~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~ 231 (430)
T PRK00178 162 STRILYVTAERFSVNTRYTLQRSDYD-GARAVTLLQSREP---------ILSPRWSPDGKRIAYVSFEQKRPRIFVQNLD 231 (430)
T ss_pred eeeEEEEEeeCCCCCcceEEEEECCC-CCCceEEecCCCc---------eeeeeECCCCCEEEEEEcCCCCCEEEEEECC
Confidence 4567777543 334467778887765 2344555433201 1233444 44788876554 369999999
Q ss_pred CCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCC
Q 006979 174 SKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDP 253 (623)
Q Consensus 174 ~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSP 253 (623)
++ ..++++.. ......+.|||||++|+|+...... .+||++|+++++ .++|+........|.|||
T Consensus 232 ~g--~~~~l~~~----~g~~~~~~~SpDG~~la~~~~~~g~------~~Iy~~d~~~~~---~~~lt~~~~~~~~~~~sp 296 (430)
T PRK00178 232 TG--RREQITNF----EGLNGAPAWSPDGSKLAFVLSKDGN------PEIYVMDLASRQ---LSRVTNHPAIDTEPFWGK 296 (430)
T ss_pred CC--CEEEccCC----CCCcCCeEECCCCCEEEEEEccCCC------ceEEEEECCCCC---eEEcccCCCCcCCeEECC
Confidence 87 67788764 2233468999999999987654322 679999999988 777877665667799999
Q ss_pred CCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEec
Q 006979 254 RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE 332 (623)
Q Consensus 254 DG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~ 332 (623)
||++|+|.+ ++.+ ..+||+++++++. ..++... . .+...+.|+|||+ ++|.... .+..+|+.+|+
T Consensus 297 Dg~~i~f~s-~~~g----~~~iy~~d~~~g~---~~~lt~~-~----~~~~~~~~Spdg~~i~~~~~~-~~~~~l~~~dl 362 (430)
T PRK00178 297 DGRTLYFTS-DRGG----KPQIYKVNVNGGR---AERVTFV-G----NYNARPRLSADGKTLVMVHRQ-DGNFHVAAQDL 362 (430)
T ss_pred CCCEEEEEE-CCCC----CceEEEEECCCCC---EEEeecC-C----CCccceEECCCCCEEEEEEcc-CCceEEEEEEC
Confidence 999999987 4332 3579999987763 2333322 2 2345789999999 7787765 56678999999
Q ss_pred CCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCC
Q 006979 333 SNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF 400 (623)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~ 400 (623)
.+++.+.|+....+ ..+.|++ +|+.++++..+.|..+||.++.+++..++|+.+.
T Consensus 363 ~tg~~~~lt~~~~~-~~p~~sp------------dg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~~ 417 (430)
T PRK00178 363 QRGSVRILTDTSLD-ESPSVAP------------NGTMLIYATRQQGRGVLMLVSINGRVRLPLPTAQ 417 (430)
T ss_pred CCCCEEEccCCCCC-CCceECC------------CCCEEEEEEecCCceEEEEEECCCCceEECcCCC
Confidence 99988888754222 3456654 8999999999999999999999887777776543
No 23
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.83 E-value=5.2e-18 Score=181.37 Aligned_cols=247 Identities=14% Similarity=0.159 Sum_probs=172.9
Q ss_pred CcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeC--CEEEEEeCCC--CcEEEEeCCCC
Q 006979 100 GRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG--DTVIFSNYKD--QRLYKHSIDSK 175 (623)
Q Consensus 100 ~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~--d~l~f~~~~~--~~l~~~d~~~g 175 (623)
+++.|+... .++..||.++.+ |...+.++..... ..+..+++ +.|+|....+ .+||++|+.++
T Consensus 164 ~~iayv~~~---~~~~~L~~~D~d-G~~~~~l~~~~~~---------v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g 230 (427)
T PRK02889 164 TRIAYVIKT---GNRYQLQISDAD-GQNAQSALSSPEP---------IISPAWSPDGTKLAYVSFESKKPVVYVHDLATG 230 (427)
T ss_pred cEEEEEEcc---CCccEEEEECCC-CCCceEeccCCCC---------cccceEcCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 567777522 356778887765 2234444432211 22334444 4788876544 35999999987
Q ss_pred CCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCC
Q 006979 176 DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRG 255 (623)
Q Consensus 176 ~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG 255 (623)
..++++.. ......+.|||||++|++....... .+||.+|++++. .++++........|.|||||
T Consensus 231 --~~~~l~~~----~g~~~~~~~SPDG~~la~~~~~~g~------~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpDG 295 (427)
T PRK02889 231 --RRRVVANF----KGSNSAPAWSPDGRTLAVALSRDGN------SQIYTVNADGSG---LRRLTQSSGIDTEPFFSPDG 295 (427)
T ss_pred --CEEEeecC----CCCccceEECCCCCEEEEEEccCCC------ceEEEEECCCCC---cEECCCCCCCCcCeEEcCCC
Confidence 67777753 2234568999999999987654322 679999999887 77887765556679999999
Q ss_pred CEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCC
Q 006979 256 ERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESN 334 (623)
Q Consensus 256 ~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~ 334 (623)
++|+|++ ++.+ ..+||+++++++. ..++... . .+...+.|+|||+ ++|.++. .+..+|+.+|+.+
T Consensus 296 ~~l~f~s-~~~g----~~~Iy~~~~~~g~---~~~lt~~-g----~~~~~~~~SpDG~~Ia~~s~~-~g~~~I~v~d~~~ 361 (427)
T PRK02889 296 RSIYFTS-DRGG----APQIYRMPASGGA---AQRVTFT-G----SYNTSPRISPDGKLLAYISRV-GGAFKLYVQDLAT 361 (427)
T ss_pred CEEEEEe-cCCC----CcEEEEEECCCCc---eEEEecC-C----CCcCceEECCCCCEEEEEEcc-CCcEEEEEEECCC
Confidence 9999986 4332 4579999987652 2333322 2 2345789999999 8887766 5667899999999
Q ss_pred CeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCc
Q 006979 335 NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT 401 (623)
Q Consensus 335 ~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~ 401 (623)
++.+.++... ....+.|++ +++.|++...+.|...||.++.+++..+.++.+.+
T Consensus 362 g~~~~lt~~~-~~~~p~~sp------------dg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g 415 (427)
T PRK02889 362 GQVTALTDTT-RDESPSFAP------------NGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQGG 415 (427)
T ss_pred CCeEEccCCC-CccCceECC------------CCCEEEEEEecCCCEEEEEEECCCCceEEeecCCC
Confidence 8888887442 224566665 99999999999999999999998776767765433
No 24
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.82 E-value=6e-18 Score=181.46 Aligned_cols=252 Identities=13% Similarity=0.144 Sum_probs=175.4
Q ss_pred CCcEEEEeecCC-CCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCCC--CcEEEEeCCCC
Q 006979 99 HGRLIWLESRPT-EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSK 175 (623)
Q Consensus 99 ~~~~~~l~~~~~-e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~~--~~l~~~d~~~g 175 (623)
+.++.|+..... +..+..|+.++.+ |+..+.++.....+ ....|.++++.|+|..... .+||+++++++
T Consensus 167 ~~~ia~v~~~~~~~~~~~~l~i~D~~-g~~~~~lt~~~~~v-------~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g 238 (433)
T PRK04922 167 WTRIAYVTVSGAGGAMRYALQVADSD-GYNPQTILRSAEPI-------LSPAWSPDGKKLAYVSFERGRSAIYVQDLATG 238 (433)
T ss_pred cceEEEEEEeCCCCCceEEEEEECCC-CCCceEeecCCCcc-------ccccCCCCCCEEEEEecCCCCcEEEEEECCCC
Confidence 466778765432 2346678877765 33455555432110 1123444444788876544 35999999887
Q ss_pred CCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCC
Q 006979 176 DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRG 255 (623)
Q Consensus 176 ~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG 255 (623)
..++++.. ......+.|||||++|+++....+. .+||++|+++++ .++++........|+|||||
T Consensus 239 --~~~~l~~~----~g~~~~~~~SpDG~~l~~~~s~~g~------~~Iy~~d~~~g~---~~~lt~~~~~~~~~~~spDG 303 (433)
T PRK04922 239 --QRELVASF----RGINGAPSFSPDGRRLALTLSRDGN------PEIYVMDLGSRQ---LTRLTNHFGIDTEPTWAPDG 303 (433)
T ss_pred --CEEEeccC----CCCccCceECCCCCEEEEEEeCCCC------ceEEEEECCCCC---eEECccCCCCccceEECCCC
Confidence 67777754 2233468999999999987654322 579999999988 77787665555679999999
Q ss_pred CEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCC
Q 006979 256 ERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESN 334 (623)
Q Consensus 256 ~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~ 334 (623)
++|+|.+ ++.+ ..+||+++++++. ..++... . .+...+.|+|||+ ++|.+.. .+..+|+.+|+.+
T Consensus 304 ~~l~f~s-d~~g----~~~iy~~dl~~g~---~~~lt~~-g----~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~ 369 (433)
T PRK04922 304 KSIYFTS-DRGG----RPQIYRVAASGGS---AERLTFQ-G----NYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLST 369 (433)
T ss_pred CEEEEEE-CCCC----CceEEEEECCCCC---eEEeecC-C----CCccCEEECCCCCEEEEEECC-CCceeEEEEECCC
Confidence 9999997 4332 3579999987762 2333322 2 2345799999999 7777665 5667999999999
Q ss_pred CeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCC
Q 006979 335 NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF 400 (623)
Q Consensus 335 ~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~ 400 (623)
++.+.|+... ....+.|++ |++.+++.++..+...||.++++++..++|+.+.
T Consensus 370 g~~~~Lt~~~-~~~~p~~sp------------dG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~~ 422 (433)
T PRK04922 370 GSVRTLTPGS-LDESPSFAP------------NGSMVLYATREGGRGVLAAVSTDGRVRQRLVSAD 422 (433)
T ss_pred CCeEECCCCC-CCCCceECC------------CCCEEEEEEecCCceEEEEEECCCCceEEcccCC
Confidence 8888777542 223455654 8999999998888999999999988888887543
No 25
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=3.9e-17 Score=174.82 Aligned_cols=236 Identities=14% Similarity=0.148 Sum_probs=164.0
Q ss_pred CEEEEEeCC-----CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 006979 155 DTVIFSNYK-----DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (623)
Q Consensus 155 d~l~f~~~~-----~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~ 229 (623)
.+|+|+... +.+||++|.++. ..+.|+.. ......+.|||||++|+|+..+.. ..+||++|+.
T Consensus 169 ~ria~v~~~~~~~~~~~i~i~d~dg~--~~~~lt~~----~~~v~~p~wSPDG~~la~~s~~~~------~~~i~i~dl~ 236 (429)
T PRK01742 169 TRIAYVVQKNGGSQPYEVRVADYDGF--NQFIVNRS----SQPLMSPAWSPDGSKLAYVSFENK------KSQLVVHDLR 236 (429)
T ss_pred CEEEEEEEEcCCCceEEEEEECCCCC--CceEeccC----CCccccceEcCCCCEEEEEEecCC------CcEEEEEeCC
Confidence 467776433 246999999876 67778764 345678999999999999876432 2679999999
Q ss_pred CCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeC
Q 006979 230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 309 (623)
Q Consensus 230 ~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws 309 (623)
+++ .+.+.........|+|||||++|+|..... ...+||++|++++ ..+.++... .....+.|+
T Consensus 237 tg~---~~~l~~~~g~~~~~~wSPDG~~La~~~~~~-----g~~~Iy~~d~~~~----~~~~lt~~~----~~~~~~~wS 300 (429)
T PRK01742 237 SGA---RKVVASFRGHNGAPAFSPDGSRLAFASSKD-----GVLNIYVMGANGG----TPSQLTSGA----GNNTEPSWS 300 (429)
T ss_pred CCc---eEEEecCCCccCceeECCCCCEEEEEEecC-----CcEEEEEEECCCC----CeEeeccCC----CCcCCEEEC
Confidence 887 556654444455799999999999986433 2457999998766 233344433 456789999
Q ss_pred CCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeC
Q 006979 310 SKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (623)
Q Consensus 310 ~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~ 388 (623)
|||+ ++|.+++ .|..+||.++..++..+.+... . ..+.|++ +++.|++... ..++++|+
T Consensus 301 pDG~~i~f~s~~-~g~~~I~~~~~~~~~~~~l~~~-~--~~~~~Sp------------DG~~ia~~~~----~~i~~~Dl 360 (429)
T PRK01742 301 PDGQSILFTSDR-SGSPQVYRMSASGGGASLVGGR-G--YSAQISA------------DGKTLVMING----DNVVKQDL 360 (429)
T ss_pred CCCCEEEEEECC-CCCceEEEEECCCCCeEEecCC-C--CCccCCC------------CCCEEEEEcC----CCEEEEEC
Confidence 9999 8888887 6788999999877766555322 1 2344554 8888887753 45788999
Q ss_pred CCCceeecccCCcce-EeeeecCCEEEEEEecCCCCCeEEEEEcCCCcceee
Q 006979 389 FGHSLSLLDIPFTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 439 (623)
Q Consensus 389 ~~~~~~~lt~~~~~v-~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~l 439 (623)
.+++.+.++...... -.+++++..+++... ......++.++.+++..++|
T Consensus 361 ~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~-~g~~~~l~~~~~~G~~~~~l 411 (429)
T PRK01742 361 TSGSTEVLSSTFLDESPSISPNGIMIIYSST-QGLGKVLQLVSADGRFKARL 411 (429)
T ss_pred CCCCeEEecCCCCCCCceECCCCCEEEEEEc-CCCceEEEEEECCCCceEEc
Confidence 998888776542211 124788888877764 33344566777766655444
No 26
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.79 E-value=5.6e-17 Score=173.87 Aligned_cols=240 Identities=18% Similarity=0.204 Sum_probs=170.9
Q ss_pred CEEEEEeCC----CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 006979 155 DTVIFSNYK----DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (623)
Q Consensus 155 d~l~f~~~~----~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~ 230 (623)
++++|.... ...||++|.+++ ..++|+.. ......+.|||||++|+|+...... ..|+++|+.+
T Consensus 156 ~~~~~~~~~~~~~~~~l~~~d~~g~--~~~~l~~~----~~~~~~p~~Spdg~~la~~~~~~~~------~~i~v~d~~~ 223 (417)
T TIGR02800 156 TRIAYVSKSGKSRRYELQVADYDGA--NPQTITRS----REPILSPAWSPDGQKLAYVSFESGK------PEIYVQDLAT 223 (417)
T ss_pred CEEEEEEEeCCCCcceEEEEcCCCC--CCEEeecC----CCceecccCCCCCCEEEEEEcCCCC------cEEEEEECCC
Confidence 456666533 235999998765 67888864 3345678899999999998754321 6799999998
Q ss_pred CCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCC
Q 006979 231 QNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS 310 (623)
Q Consensus 231 g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~ 310 (623)
++ .+.+.........++|||||++|+|..... ...+||++++.++. ...+.... .....+.|+|
T Consensus 224 g~---~~~~~~~~~~~~~~~~spDg~~l~~~~~~~-----~~~~i~~~d~~~~~----~~~l~~~~----~~~~~~~~s~ 287 (417)
T TIGR02800 224 GQ---REKVASFPGMNGAPAFSPDGSKLAVSLSKD-----GNPDIYVMDLDGKQ----LTRLTNGP----GIDTEPSWSP 287 (417)
T ss_pred CC---EEEeecCCCCccceEECCCCCEEEEEECCC-----CCccEEEEECCCCC----EEECCCCC----CCCCCEEECC
Confidence 87 555654444455699999999999886332 24579999998762 22333322 2345789999
Q ss_pred CCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCC
Q 006979 311 KGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF 389 (623)
Q Consensus 311 DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~ 389 (623)
||+ ++|.+++ .+..+||.+|+.+++.+.++........+.|++ +++.++++....+..+|+.+|++
T Consensus 288 dg~~l~~~s~~-~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~sp------------dg~~i~~~~~~~~~~~i~~~d~~ 354 (417)
T TIGR02800 288 DGKSIAFTSDR-GGSPQIYMMDADGGEVRRLTFRGGYNASPSWSP------------DGDLIAFVHREGGGFNIAVMDLD 354 (417)
T ss_pred CCCEEEEEECC-CCCceEEEEECCCCCEEEeecCCCCccCeEECC------------CCCEEEEEEccCCceEEEEEeCC
Confidence 999 8888877 677799999998888877775443444455554 88899998877778899999999
Q ss_pred CCceeecccCCcceE-eeeecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979 390 GHSLSLLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (623)
Q Consensus 390 ~~~~~~lt~~~~~v~-~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~ 436 (623)
++..+.++....... .++++++.+++....... ..+|.++.+++..
T Consensus 355 ~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~~-~~l~~~~~~g~~~ 401 (417)
T TIGR02800 355 GGGERVLTDTGLDESPSFAPNGRMILYATTRGGR-GVLGLVSTDGRFR 401 (417)
T ss_pred CCCeEEccCCCCCCCceECCCCCEEEEEEeCCCc-EEEEEEECCCcee
Confidence 988887775432222 347888888888765433 5788887666553
No 27
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.79 E-value=1.7e-19 Score=174.58 Aligned_cols=105 Identities=36% Similarity=0.538 Sum_probs=95.3
Q ss_pred cCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHH
Q 006979 512 ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAA 591 (623)
Q Consensus 512 ~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~ 591 (623)
.|+...++|+++||+|+.+||||++++|.+|.+.+.++++..+++|+.+++++|++++.+|++||+|+|+|+||++++++
T Consensus 2 ~f~~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~ 81 (213)
T PF00326_consen 2 SFNWNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLA 81 (213)
T ss_dssp --SHHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHH
T ss_pred eeeHHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchh
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-cCCCceeEEEecccCCCHHHhhhh
Q 006979 592 L-AFRDTFKAGASLYGVSIPVIISEE 616 (623)
Q Consensus 592 ~-~~~~~f~a~v~~~g~~d~~~~~~~ 616 (623)
+ .+|++|+|+|+.+|++|+..+...
T Consensus 82 ~~~~~~~f~a~v~~~g~~d~~~~~~~ 107 (213)
T PF00326_consen 82 ATQHPDRFKAAVAGAGVSDLFSYYGT 107 (213)
T ss_dssp HHHTCCGSSEEEEESE-SSTTCSBHH
T ss_pred hcccceeeeeeeccceecchhccccc
Confidence 9 699999999999999998776544
No 28
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.75 E-value=9.4e-16 Score=164.38 Aligned_cols=251 Identities=15% Similarity=0.228 Sum_probs=172.3
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCCC--CcEEEEeCCCCC
Q 006979 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSKD 176 (623)
Q Consensus 99 ~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~~--~~l~~~d~~~g~ 176 (623)
+.+++|+..++ .+++..|+..+.. |+..+.++.....+ ....|.+++..++|..... .+||++++.++
T Consensus 155 ~~~~~~~~~~~-~~~~~~l~~~d~~-g~~~~~l~~~~~~~-------~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g- 224 (417)
T TIGR02800 155 STRIAYVSKSG-KSRRYELQVADYD-GANPQTITRSREPI-------LSPAWSPDGQKLAYVSFESGKPEIYVQDLATG- 224 (417)
T ss_pred CCEEEEEEEeC-CCCcceEEEEcCC-CCCCEEeecCCCce-------ecccCCCCCCEEEEEEcCCCCcEEEEEECCCC-
Confidence 67788887665 3567778887765 33456665432110 0112333444788876544 46999999877
Q ss_pred CCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCC
Q 006979 177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE 256 (623)
Q Consensus 177 ~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~ 256 (623)
..+.++.. ......+.|+|||+.|++....... .+||.+|++++. .++++........|.|||||+
T Consensus 225 -~~~~~~~~----~~~~~~~~~spDg~~l~~~~~~~~~------~~i~~~d~~~~~---~~~l~~~~~~~~~~~~s~dg~ 290 (417)
T TIGR02800 225 -QREKVASF----PGMNGAPAFSPDGSKLAVSLSKDGN------PDIYVMDLDGKQ---LTRLTNGPGIDTEPSWSPDGK 290 (417)
T ss_pred -CEEEeecC----CCCccceEECCCCCEEEEEECCCCC------ccEEEEECCCCC---EEECCCCCCCCCCEEECCCCC
Confidence 56666543 2233458899999999987653322 579999999887 677776555556799999999
Q ss_pred EEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCC
Q 006979 257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN 335 (623)
Q Consensus 257 ~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~ 335 (623)
+|+|... +.+ ..+||+++++++. ..++... . .....+.|+|||+ +++.... .+..+|+.+|+.++
T Consensus 291 ~l~~~s~-~~g----~~~iy~~d~~~~~---~~~l~~~-~----~~~~~~~~spdg~~i~~~~~~-~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 291 SIAFTSD-RGG----SPQIYMMDADGGE---VRRLTFR-G----GYNASPSWSPDGDLIAFVHRE-GGGFNIAVMDLDGG 356 (417)
T ss_pred EEEEEEC-CCC----CceEEEEECCCCC---EEEeecC-C----CCccCeEECCCCCEEEEEEcc-CCceEEEEEeCCCC
Confidence 9999873 322 3479999988662 2333322 2 3456889999999 6666655 56778999999887
Q ss_pred eEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCC
Q 006979 336 EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF 400 (623)
Q Consensus 336 ~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~ 400 (623)
..+.+.... ....+.|++ +++.|++.+.+++...|++++.+++..+.++.+.
T Consensus 357 ~~~~l~~~~-~~~~p~~sp------------dg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~~~ 408 (417)
T TIGR02800 357 GERVLTDTG-LDESPSFAP------------NGRMILYATTRGGRGVLGLVSTDGRFRARLPLGN 408 (417)
T ss_pred CeEEccCCC-CCCCceECC------------CCCEEEEEEeCCCcEEEEEEECCCceeeECCCCC
Confidence 776665332 223445554 8999999999989899999998887777777653
No 29
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=1.4e-15 Score=162.96 Aligned_cols=201 Identities=18% Similarity=0.245 Sum_probs=150.8
Q ss_pred CCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEec
Q 006979 202 FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS 281 (623)
Q Consensus 202 G~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~ 281 (623)
+++|+|+....... ...+|+++|.++.. .+.++.+.+.+..|.|||||++|+|++.+. ...+||++|+.
T Consensus 168 ~~ria~v~~~~~~~---~~~~i~i~d~dg~~---~~~lt~~~~~v~~p~wSPDG~~la~~s~~~-----~~~~i~i~dl~ 236 (429)
T PRK01742 168 RTRIAYVVQKNGGS---QPYEVRVADYDGFN---QFIVNRSSQPLMSPAWSPDGSKLAYVSFEN-----KKSQLVVHDLR 236 (429)
T ss_pred CCEEEEEEEEcCCC---ceEEEEEECCCCCC---ceEeccCCCccccceEcCCCCEEEEEEecC-----CCcEEEEEeCC
Confidence 46899987643211 23789999999877 677887777788899999999999998653 24679999998
Q ss_pred CCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCccee
Q 006979 282 ENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYE 360 (623)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~ 360 (623)
++ ..+.+.... .....+.|+|||+ |++.... +|..+||.+|+++++.++++........+.|++
T Consensus 237 tg----~~~~l~~~~----g~~~~~~wSPDG~~La~~~~~-~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp------ 301 (429)
T PRK01742 237 SG----ARKVVASFR----GHNGAPAFSPDGSRLAFASSK-DGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSP------ 301 (429)
T ss_pred CC----ceEEEecCC----CccCceeECCCCCEEEEEEec-CCcEEEEEEECCCCCeEeeccCCCCcCCEEECC------
Confidence 76 233333333 3345799999999 7777665 678899999998888888887655566677765
Q ss_pred EEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCcceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCcceeee
Q 006979 361 IIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 440 (623)
Q Consensus 361 ~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~lt 440 (623)
|++.|++++.++|..+||.++..++..+.++... ....++++++.+++... ..++++|+.+++.+.++
T Consensus 302 ------DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~-~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt 369 (429)
T PRK01742 302 ------DGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG-YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLS 369 (429)
T ss_pred ------CCCEEEEEECCCCCceEEEEECCCCCeEEecCCC-CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEec
Confidence 8899999998889999999999888777764322 11234889998888754 46888999888765443
No 30
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.71 E-value=1.1e-15 Score=160.52 Aligned_cols=230 Identities=15% Similarity=0.188 Sum_probs=169.8
Q ss_pred CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCC
Q 006979 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD 244 (623)
Q Consensus 165 ~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~ 244 (623)
.+|++.|-++- ..+.++.. ......+.|+|+++.++|+.-..... .++|++++++++ ..++..-..
T Consensus 173 ~~l~~~D~dg~--~~~~l~~~----~~~~~~p~ws~~~~~~~y~~f~~~~~-----~~i~~~~l~~g~---~~~i~~~~g 238 (425)
T COG0823 173 YELALGDYDGY--NQQKLTDS----GSLILTPAWSPDGKKLAYVSFELGGC-----PRIYYLDLNTGK---RPVILNFNG 238 (425)
T ss_pred ceEEEEccCCc--ceeEeccc----CcceeccccCcCCCceEEEEEecCCC-----ceEEEEeccCCc---cceeeccCC
Confidence 35888887743 56777765 44556799999999999986654321 579999999987 444444334
Q ss_pred cccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCC
Q 006979 245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNG 323 (623)
Q Consensus 245 ~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g 323 (623)
....|+|||||++|+|..... ...+||++|+.++. .++ ++... .....|.|+|||+ ++|.+++ .|
T Consensus 239 ~~~~P~fspDG~~l~f~~~rd-----g~~~iy~~dl~~~~---~~~-Lt~~~----gi~~~Ps~spdG~~ivf~Sdr-~G 304 (425)
T COG0823 239 NNGAPAFSPDGSKLAFSSSRD-----GSPDIYLMDLDGKN---LPR-LTNGF----GINTSPSWSPDGSKIVFTSDR-GG 304 (425)
T ss_pred ccCCccCCCCCCEEEEEECCC-----CCccEEEEcCCCCc---cee-cccCC----ccccCccCCCCCCEEEEEeCC-CC
Confidence 456799999999999998443 36789999999873 233 44444 3445999999999 9999999 89
Q ss_pred eeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCc-eeecccCCcc
Q 006979 324 FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTD 402 (623)
Q Consensus 324 ~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~-~~~lt~~~~~ 402 (623)
.-+||+++++++..++++........|.|++ ||+++++.....|...+...|+.++. ++.++.....
T Consensus 305 ~p~I~~~~~~g~~~~riT~~~~~~~~p~~Sp------------dG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~ 372 (425)
T COG0823 305 RPQIYLYDLEGSQVTRLTFSGGGNSNPVWSP------------DGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLN 372 (425)
T ss_pred CcceEEECCCCCceeEeeccCCCCcCccCCC------------CCCEEEEEeccCCceeeEEeccCCCCcEEEccccccC
Confidence 9999999999999999986544444677775 99999998866677889999887766 7777765433
Q ss_pred e-EeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979 403 I-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (623)
Q Consensus 403 v-~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~ 435 (623)
- ..+.+++..+.+..... ..+.++.+++.+..
T Consensus 373 e~ps~~~ng~~i~~~s~~~-~~~~l~~~s~~g~~ 405 (425)
T COG0823 373 ESPSWAPNGRMIMFSSGQG-GGSVLSLVSLDGRV 405 (425)
T ss_pred CCCCcCCCCceEEEeccCC-CCceEEEeecccee
Confidence 2 22367788888877655 55677777765543
No 31
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.68 E-value=4.2e-15 Score=154.95 Aligned_cols=249 Identities=16% Similarity=0.182 Sum_probs=173.6
Q ss_pred EEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCC------C--------CeeecceeeCCCCCEEEEEEeccCCC
Q 006979 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGE------P--------LVSYADGIFDPRFNRYVTVREDRRQD 215 (623)
Q Consensus 150 ~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~------~--------~~~~~d~~~sPdG~~l~~v~~~~~~~ 215 (623)
|+++++.++|+. ++.||+.++.++ ..++||..+.. + -.+...+.|||||++|+|.+.|...-
T Consensus 50 ~sP~g~~~~~v~--~~nly~~~~~~~--~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v 125 (353)
T PF00930_consen 50 WSPDGKYIAFVR--DNNLYLRDLATG--QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREV 125 (353)
T ss_dssp E-SSSTEEEEEE--TTEEEEESSTTS--EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS
T ss_pred eecCCCeeEEEe--cCceEEEECCCC--CeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCC
Confidence 444444899985 466999999877 78899985311 0 11234577999999999998764320
Q ss_pred ---------------------------CCCceeEEEEEEcCCCCcccceecc------cCCCcccceeeCCCCCEEEEEE
Q 006979 216 ---------------------------ALNSTTEIVAIALNGQNIQEPKVLV------SGSDFYAFPRMDPRGERMAWIE 262 (623)
Q Consensus 216 ---------------------------~~~~~~~L~~idl~~g~~~~~~~l~------~~~~~~~~p~wSPDG~~la~~~ 262 (623)
..++...|+++|+++++ ...+. ..........|++|+++|++..
T Consensus 126 ~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~---~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~ 202 (353)
T PF00930_consen 126 PEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGK---TTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQW 202 (353)
T ss_dssp -EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTC---CCEE---HHHHTSSEEEEEEEEEETTEEEEEEE
T ss_pred ceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCc---EEEeeeccccCCCccCcccceecCCCcEEEEEE
Confidence 12357789999999987 32322 1222345677999999888887
Q ss_pred ecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeC-CCCc-EEEEEeCCCCeeeEEEEecCCCeEEEE
Q 006979 263 WHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS-SKGE-LFFVTDRKNGFWNLHKWIESNNEVLAI 340 (623)
Q Consensus 263 ~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws-~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l 340 (623)
.++.+ +...|.++|..++.. ..+.....+.|......+.+. +++. +++++.+ +|+.+||.++.+++..+.|
T Consensus 203 ~nR~q---~~~~l~~~d~~tg~~---~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~-~G~~hly~~~~~~~~~~~l 275 (353)
T PF00930_consen 203 LNRDQ---NRLDLVLCDASTGET---RVVLEETSDGWVDVYDPPHFLGPDGNEFLWISER-DGYRHLYLYDLDGGKPRQL 275 (353)
T ss_dssp EETTS---TEEEEEEEEECTTTC---EEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEET-TSSEEEEEEETTSSEEEES
T ss_pred cccCC---CEEEEEEEECCCCce---eEEEEecCCcceeeecccccccCCCCEEEEEEEc-CCCcEEEEEcccccceecc
Confidence 77764 678889999977632 233333333676666667775 7877 8888886 8999999999999999999
Q ss_pred eecccccccc-cccccCcceeEEeecCCCCEEEEEEEE--CCeEEEEEEeCC-CCceeecccCCcce-E-eeeecCCEEE
Q 006979 341 YSLDAEFSRP-LWVFGINSYEIIQSHGEKNLIACSYRQ--NGRSYLGILDDF-GHSLSLLDIPFTDI-D-NITLGNDCLF 414 (623)
Q Consensus 341 ~~~~~~~~~~-~w~~~~~~~~~l~~s~~~~~l~~~~~~--~g~~~L~~~d~~-~~~~~~lt~~~~~v-~-~~~~~~~~~~ 414 (623)
+.++.++... .|. ++++.|||++.. .+..|||+++++ ++++++||...... . .++++++.++
T Consensus 276 T~G~~~V~~i~~~d------------~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v 343 (353)
T PF00930_consen 276 TSGDWEVTSILGWD------------EDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYV 343 (353)
T ss_dssp S-SSS-EEEEEEEE------------CTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEE
T ss_pred ccCceeecccceEc------------CCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEE
Confidence 9887776432 222 378899999986 458999999999 99999999876554 2 3489999999
Q ss_pred EEEecCCCCC
Q 006979 415 VEGASGVEPS 424 (623)
Q Consensus 415 ~~~~s~~~~~ 424 (623)
...+++..|+
T Consensus 344 ~~~s~~~~P~ 353 (353)
T PF00930_consen 344 DTYSGPDTPP 353 (353)
T ss_dssp EEEESSSSCE
T ss_pred EEEcCCCCCC
Confidence 9999888763
No 32
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.68 E-value=6e-15 Score=154.87 Aligned_cols=206 Identities=16% Similarity=0.287 Sum_probs=147.7
Q ss_pred EEEeCCEEEEEeCCC---CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 006979 150 FRIFGDTVIFSNYKD---QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (623)
Q Consensus 150 ~~~s~d~l~f~~~~~---~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i 226 (623)
|......+.|..... .++|+++++++ ..++.++. ......|+|||||++|+|+...... .+||++
T Consensus 200 ws~~~~~~~y~~f~~~~~~~i~~~~l~~g-~~~~i~~~-----~g~~~~P~fspDG~~l~f~~~rdg~------~~iy~~ 267 (425)
T COG0823 200 WSPDGKKLAYVSFELGGCPRIYYLDLNTG-KRPVILNF-----NGNNGAPAFSPDGSKLAFSSSRDGS------PDIYLM 267 (425)
T ss_pred cCcCCCceEEEEEecCCCceEEEEeccCC-ccceeecc-----CCccCCccCCCCCCEEEEEECCCCC------ccEEEE
Confidence 333333555543332 35999999987 34445553 3445679999999999998876533 789999
Q ss_pred EcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCc
Q 006979 227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 306 (623)
Q Consensus 227 dl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (623)
|++++. .++|+.+......|.|||||++|+|++ ++.+ ..+||+++++++. ..++..... ....|
T Consensus 268 dl~~~~---~~~Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G----~p~I~~~~~~g~~---~~riT~~~~-----~~~~p 331 (425)
T COG0823 268 DLDGKN---LPRLTNGFGINTSPSWSPDGSKIVFTS-DRGG----RPQIYLYDLEGSQ---VTRLTFSGG-----GNSNP 331 (425)
T ss_pred cCCCCc---ceecccCCccccCccCCCCCCEEEEEe-CCCC----CcceEEECCCCCc---eeEeeccCC-----CCcCc
Confidence 999988 677888877777999999999999998 6654 4479999999873 344433332 33489
Q ss_pred eeCCCCc-EEEEEeCCCCeeeEEEEecCCCe-EEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEE
Q 006979 307 KWSSKGE-LFFVTDRKNGFWNLHKWIESNNE-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 384 (623)
Q Consensus 307 ~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~-~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~ 384 (623)
.|+|||+ ++|.... .|.+.+...|+.++. .+.++ .......+.|.+ +++.+++.+...+...|+
T Consensus 332 ~~SpdG~~i~~~~~~-~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~------------ng~~i~~~s~~~~~~~l~ 397 (425)
T COG0823 332 VWSPDGDKIVFESSS-GGQWDIDKNDLASGGKIRILT-STYLNESPSWAP------------NGRMIMFSSGQGGGSVLS 397 (425)
T ss_pred cCCCCCCEEEEEecc-CCceeeEEeccCCCCcEEEcc-ccccCCCCCcCC------------CCceEEEeccCCCCceEE
Confidence 9999999 7777744 567889999988776 55554 333334566665 788888888777888999
Q ss_pred EEeCCCCceeecc
Q 006979 385 ILDDFGHSLSLLD 397 (623)
Q Consensus 385 ~~d~~~~~~~~lt 397 (623)
.++.++...+.+.
T Consensus 398 ~~s~~g~~~~~~~ 410 (425)
T COG0823 398 LVSLDGRVSRPLP 410 (425)
T ss_pred EeeccceeEEEEe
Confidence 8888766554443
No 33
>PRK13604 luxD acyl transferase; Provisional
Probab=99.62 E-value=4.7e-15 Score=146.93 Aligned_cols=136 Identities=13% Similarity=0.052 Sum_probs=106.5
Q ss_pred EeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCC-CCCchhHH
Q 006979 465 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS-TGYGREFR 543 (623)
Q Consensus 465 ~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs-~~~g~~~~ 543 (623)
.+.+. +|..|.||+..|.+.. .++.|+||++||-... ...+...+.+|+++||+|+.+|+||+ |.++.++.
T Consensus 13 ~~~~~-dG~~L~Gwl~~P~~~~-----~~~~~~vIi~HGf~~~--~~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~ 84 (307)
T PRK13604 13 VICLE-NGQSIRVWETLPKENS-----PKKNNTILIASGFARR--MDHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTID 84 (307)
T ss_pred eEEcC-CCCEEEEEEEcCcccC-----CCCCCEEEEeCCCCCC--hHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCccc
Confidence 35566 8999999999997521 5677999999998432 23467789999999999999999876 66666654
Q ss_pred HhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCCceeEEEecccCCCHHHhhhh
Q 006979 544 ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVSIPVIISEE 616 (623)
Q Consensus 544 ~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v~~~g~~d~~~~~~~ 616 (623)
+.... . ..+|+.++++|+.+++ .++|+++||||||.+++.++..+ .++++|+.+|++++.++...
T Consensus 85 ~~t~s-~---g~~Dl~aaid~lk~~~---~~~I~LiG~SmGgava~~~A~~~-~v~~lI~~sp~~~l~d~l~~ 149 (307)
T PRK13604 85 EFTMS-I---GKNSLLTVVDWLNTRG---INNLGLIAASLSARIAYEVINEI-DLSFLITAVGVVNLRDTLER 149 (307)
T ss_pred cCccc-c---cHHHHHHHHHHHHhcC---CCceEEEEECHHHHHHHHHhcCC-CCCEEEEcCCcccHHHHHHH
Confidence 32211 2 2699999999998873 47899999999999987777544 38999999999998877663
No 34
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.57 E-value=2.5e-14 Score=151.40 Aligned_cols=134 Identities=17% Similarity=0.093 Sum_probs=102.9
Q ss_pred CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (623)
Q Consensus 460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g 539 (623)
..+.++++.. +|..++++++.|+. +++.|+||+.||. .+.....+...+++|+++||+|+.+|+||.|...
T Consensus 167 ~~e~v~i~~~-~g~~l~g~l~~P~~-------~~~~P~Vli~gG~-~~~~~~~~~~~~~~La~~Gy~vl~~D~pG~G~s~ 237 (414)
T PRK05077 167 ELKELEFPIP-GGGPITGFLHLPKG-------DGPFPTVLVCGGL-DSLQTDYYRLFRDYLAPRGIAMLTIDMPSVGFSS 237 (414)
T ss_pred ceEEEEEEcC-CCcEEEEEEEECCC-------CCCccEEEEeCCc-ccchhhhHHHHHHHHHhCCCEEEEECCCCCCCCC
Confidence 4678999987 77789999999974 5678988866554 3322334556788999999999999999976542
Q ss_pred hhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979 540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI 609 (623)
Q Consensus 540 ~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d 609 (623)
.. . ..........+++++|.+.+.+|++||+++|+|+||++++.++ .+|++++++|+..|+.+
T Consensus 238 ~~---~----~~~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~ 301 (414)
T PRK05077 238 KW---K----LTQDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVH 301 (414)
T ss_pred CC---C----ccccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccc
Confidence 21 0 0011122335789999999999999999999999999999988 67889999999999875
No 35
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.53 E-value=3.4e-14 Score=137.29 Aligned_cols=126 Identities=20% Similarity=0.183 Sum_probs=94.2
Q ss_pred EEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcC-CHHhHHHHcCceEEEEECCCCCCCCchhH--HHhhccCCccc
Q 006979 477 AYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWTSRGWAFVDVNYGGSTGYGREF--RERLLGRWGIV 553 (623)
Q Consensus 477 ~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~-~~~~~~~a~~G~~v~~~d~rGs~~~g~~~--~~~~~~~~g~~ 553 (623)
+++|.|++. ++++|+||++||++........ ....++..+.||+|+.||++|.++.+..| ........+..
T Consensus 1 ~~ly~P~~~------~~~~P~vv~lHG~~~~~~~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~ 74 (212)
T TIGR01840 1 MYVYVPAGL------TGPRALVLALHGCGQTASAYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTG 74 (212)
T ss_pred CEEEcCCCC------CCCCCEEEEeCCCCCCHHHHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCc
Confidence 378889762 4678999999999654332211 12344555689999999999976543322 11111223445
Q ss_pred hHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979 554 DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608 (623)
Q Consensus 554 ~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~ 608 (623)
+..|+...++++.++..+|++||+|+|+|+||++++.++ .+|++|+++++++|..
T Consensus 75 ~~~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~ 130 (212)
T TIGR01840 75 EVESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLP 130 (212)
T ss_pred cHHHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCc
Confidence 788999999999998889999999999999999999998 8999999999998863
No 36
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=99.51 E-value=1.1e-13 Score=152.79 Aligned_cols=132 Identities=18% Similarity=0.174 Sum_probs=106.5
Q ss_pred ecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcc--cCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHH
Q 006979 467 PTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA--RGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE 544 (623)
Q Consensus 467 ~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~--~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~ 544 (623)
+.. ||.+|++.+|.|++ .++.|+||++||...... ........++|+++||+|+.+|+||.|+++..+.
T Consensus 2 ~~~-DG~~L~~~~~~P~~-------~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~- 72 (550)
T TIGR00976 2 PMR-DGTRLAIDVYRPAG-------GGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFD- 72 (550)
T ss_pred cCC-CCCEEEEEEEecCC-------CCCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceE-
Confidence 455 89999999999976 457899999998743211 0111235678999999999999999887765432
Q ss_pred hhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHH
Q 006979 545 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVI 612 (623)
Q Consensus 545 ~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~ 612 (623)
.++..+.+|+.++++|+.++++.| .||+++|+||||++++.++ .+|+.++|+|+..+..|+..
T Consensus 73 ----~~~~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~~ 136 (550)
T TIGR00976 73 ----LLGSDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLYR 136 (550)
T ss_pred ----ecCcccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchhH
Confidence 122567899999999999998887 6999999999999999998 77889999999999999765
No 37
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=99.50 E-value=2.1e-11 Score=130.49 Aligned_cols=311 Identities=14% Similarity=0.141 Sum_probs=185.7
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCC-CCCC-cccCC-CCCccceeeeecCCceEEEeCC--EEEEEeCCCC----cEEE
Q 006979 99 HGRLIWLESRPTEAGRGVLVKEPAKA-GDEP-SDITP-KEYAVRTTAQEYGGGAFRIFGD--TVIFSNYKDQ----RLYK 169 (623)
Q Consensus 99 ~~~~~~l~~~~~e~g~~~l~~~~~~~-gg~~-~~l~p-~~~~~r~~~~~~g~~~~~~s~d--~l~f~~~~~~----~l~~ 169 (623)
|+..||....+. +....++|....+ ++.. +.+++ ........ -..++.+.+++| .++|.-...| .|++
T Consensus 78 g~~~y~~~~~~~-~~~~~~~r~~~~~~~~~~~evllD~n~l~~~~~--~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v 154 (414)
T PF02897_consen 78 GGYYYYSRNQGG-KNYPVLYRRKTDEEDGPEEEVLLDPNELAKDGG--YVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRV 154 (414)
T ss_dssp TTEEEEEEE-SS--SS-EEEEEETTS-TS-C-EEEEEGGGGSTTSS---EEEEEEEETTTSSEEEEEEEETTSSEEEEEE
T ss_pred CCeEEEEEEcCC-CceEEEEEEecccCCCCceEEEEcchHhhccCc--eEEeeeeeECCCCCEEEEEecCCCCceEEEEE
Confidence 888888876654 4566677776541 1233 44543 22211110 111345666655 6777744433 3999
Q ss_pred EeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCC--CCCceeEEEEEEcCCCCcccceecccC--CCc
Q 006979 170 HSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD--ALNSTTEIVAIALNGQNIQEPKVLVSG--SDF 245 (623)
Q Consensus 170 ~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~--~~~~~~~L~~idl~~g~~~~~~~l~~~--~~~ 245 (623)
+|+++| . .+... -....+..+.|++||+.++|++.+.... ......++|++.+.++..+. +.+..+ ..+
T Consensus 155 ~Dl~tg--~--~l~d~--i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~ 227 (414)
T PF02897_consen 155 FDLETG--K--FLPDG--IENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPF 227 (414)
T ss_dssp EETTTT--E--EEEEE--EEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTT
T ss_pred EECCCC--c--CcCCc--ccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCc
Confidence 999876 2 22211 0012233388999999999998766432 11124889999998875322 244433 334
Q ss_pred -ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCC--CceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCC
Q 006979 246 -YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN--GDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN 322 (623)
Q Consensus 246 -~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~ 322 (623)
.....+|+||++|+....... ..+++|++++..+ .....+.+....+ .....+... ++.+|+.++...
T Consensus 228 ~~~~~~~s~d~~~l~i~~~~~~----~~s~v~~~d~~~~~~~~~~~~~l~~~~~----~~~~~v~~~-~~~~yi~Tn~~a 298 (414)
T PF02897_consen 228 WFVSVSRSKDGRYLFISSSSGT----SESEVYLLDLDDGGSPDAKPKLLSPRED----GVEYYVDHH-GDRLYILTNDDA 298 (414)
T ss_dssp SEEEEEE-TTSSEEEEEEESSS----SEEEEEEEECCCTTTSS-SEEEEEESSS----S-EEEEEEE-TTEEEEEE-TT-
T ss_pred EEEEEEecCcccEEEEEEEccc----cCCeEEEEeccccCCCcCCcEEEeCCCC----ceEEEEEcc-CCEEEEeeCCCC
Confidence 556789999999887664442 2488999999874 1112344444333 111222222 444888888756
Q ss_pred CeeeEEEEecCCCe---EE-EEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCC-CCceeecc
Q 006979 323 GFWNLHKWIESNNE---VL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF-GHSLSLLD 397 (623)
Q Consensus 323 g~~~L~~~d~~~~~---~~-~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~-~~~~~~lt 397 (623)
...+|+++++.... .+ .|.++.....- ..+.. .+++|++...+++..+|.++++. +.....+.
T Consensus 299 ~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l-------~~~~~-----~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~ 366 (414)
T PF02897_consen 299 PNGRLVAVDLADPSPAEWWTVLIPEDEDVSL-------EDVSL-----FKDYLVLSYRENGSSRLRVYDLDDGKESREIP 366 (414)
T ss_dssp TT-EEEEEETTSTSGGGEEEEEE--SSSEEE-------EEEEE-----ETTEEEEEEEETTEEEEEEEETT-TEEEEEEE
T ss_pred CCcEEEEecccccccccceeEEcCCCCceeE-------EEEEE-----ECCEEEEEEEECCccEEEEEECCCCcEEeeec
Confidence 67899999987764 34 44443222111 12222 56889999999999999999999 66666666
Q ss_pred cCCc-ceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcceeee
Q 006979 398 IPFT-DIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 440 (623)
Q Consensus 398 ~~~~-~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~lt 440 (623)
.+.. .+..+ ..+++.++|..++...|+.+|.+|+++++.+.++
T Consensus 367 ~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 367 LPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp SSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred CCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 6533 34444 5678999999999999999999999999976654
No 38
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=99.50 E-value=8.4e-14 Score=141.39 Aligned_cols=146 Identities=26% Similarity=0.340 Sum_probs=104.0
Q ss_pred CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (623)
Q Consensus 460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g 539 (623)
....|.|.+. +|..|++|++.|++. .+++|+||.+||.... ...+ .....|+.+||+|+.+|.||.++..
T Consensus 55 ~vy~v~f~s~-~g~~V~g~l~~P~~~------~~~~Pavv~~hGyg~~--~~~~-~~~~~~a~~G~~vl~~d~rGqg~~~ 124 (320)
T PF05448_consen 55 EVYDVSFESF-DGSRVYGWLYRPKNA------KGKLPAVVQFHGYGGR--SGDP-FDLLPWAAAGYAVLAMDVRGQGGRS 124 (320)
T ss_dssp EEEEEEEEEG-GGEEEEEEEEEES-S------SSSEEEEEEE--TT----GGGH-HHHHHHHHTT-EEEEE--TTTSSSS
T ss_pred EEEEEEEEcc-CCCEEEEEEEecCCC------CCCcCEEEEecCCCCC--CCCc-ccccccccCCeEEEEecCCCCCCCC
Confidence 5568899987 899999999999852 6789999999998433 1111 2234589999999999999988533
Q ss_pred hhHHHhh----c-----------c-CCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCCceeEEEe
Q 006979 540 REFRERL----L-----------G-RWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGAS 603 (623)
Q Consensus 540 ~~~~~~~----~-----------~-~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v~ 603 (623)
.+..... . + .+....+.|+..++++|.+++.+|++||+++|.|.||.++++++...++++++++
T Consensus 125 ~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~rv~~~~~ 204 (320)
T PF05448_consen 125 PDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDPRVKAAAA 204 (320)
T ss_dssp -B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSST-SEEEE
T ss_pred CCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCccccEEEe
Confidence 3221100 0 0 0111236899999999999999999999999999999999999965567999999
Q ss_pred ccc-CCCHHHhhh
Q 006979 604 LYG-VSIPVIISE 615 (623)
Q Consensus 604 ~~g-~~d~~~~~~ 615 (623)
.+| ++|+...++
T Consensus 205 ~vP~l~d~~~~~~ 217 (320)
T PF05448_consen 205 DVPFLCDFRRALE 217 (320)
T ss_dssp ESESSSSHHHHHH
T ss_pred cCCCccchhhhhh
Confidence 988 589887654
No 39
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=99.48 E-value=5.9e-14 Score=141.03 Aligned_cols=129 Identities=20% Similarity=0.203 Sum_probs=98.0
Q ss_pred CCeEEEEEEEcC--CCCCCCCCCCCCCCEEEEecCCCCCccc--C--cCC----HHhHHHHcCceEEEEECCCCCCCCch
Q 006979 471 PGQKAYAYYYPP--SNPIYQASPEEKPPLLVKSHGGPTSEAR--G--ILN----LSIQYWTSRGWAFVDVNYGGSTGYGR 540 (623)
Q Consensus 471 dg~~i~~~l~~P--~~~~~~~~~~~~~Pliv~~hGg~~~~~~--~--~~~----~~~~~~a~~G~~v~~~d~rGs~~~g~ 540 (623)
||.+|.+.+|.| .. +++.|+||..|+....... . ... .....|+++||+|+.+|.||.++++.
T Consensus 1 DGv~L~adv~~P~~~~-------~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G 73 (272)
T PF02129_consen 1 DGVRLAADVYRPGADG-------GGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEG 73 (272)
T ss_dssp TS-EEEEEEEEE--TT-------SSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S
T ss_pred CCCEEEEEEEecCCCC-------CCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCC
Confidence 688999999999 33 7899999999987422100 0 111 11234999999999999999998887
Q ss_pred hHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHH
Q 006979 541 EFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVI 612 (623)
Q Consensus 541 ~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~ 612 (623)
.+... ...+.+|..++|+|+.+|++.| .|||++|.||+|++.+.++ ..|..+||+++..+..|+.+
T Consensus 74 ~~~~~-----~~~e~~D~~d~I~W~~~Qpws~-G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~ 140 (272)
T PF02129_consen 74 EFDPM-----SPNEAQDGYDTIEWIAAQPWSN-GKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYR 140 (272)
T ss_dssp -B-TT-----SHHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCC
T ss_pred ccccC-----ChhHHHHHHHHHHHHHhCCCCC-CeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccc
Confidence 76532 6678999999999999998876 6999999999999999999 68889999999999998755
No 40
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.48 E-value=7.2e-14 Score=131.30 Aligned_cols=144 Identities=22% Similarity=0.219 Sum_probs=110.9
Q ss_pred CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (623)
Q Consensus 460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g 539 (623)
+.-.++|++. +|..|++|+..|+.. .+++|+||..||..++.. +-...-.|+..||+|+..|.||.+++.
T Consensus 55 e~ydvTf~g~-~g~rI~gwlvlP~~~------~~~~P~vV~fhGY~g~~g---~~~~~l~wa~~Gyavf~MdvRGQg~~~ 124 (321)
T COG3458 55 EVYDVTFTGY-GGARIKGWLVLPRHE------KGKLPAVVQFHGYGGRGG---EWHDMLHWAVAGYAVFVMDVRGQGSSS 124 (321)
T ss_pred EEEEEEEecc-CCceEEEEEEeeccc------CCccceEEEEeeccCCCC---CccccccccccceeEEEEecccCCCcc
Confidence 4457888887 999999999999872 488999999999843332 112334589999999999999987763
Q ss_pred hhHHHh----------hc-------cCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCCceeEEE
Q 006979 540 REFRER----------LL-------GRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGA 602 (623)
Q Consensus 540 ~~~~~~----------~~-------~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v 602 (623)
.+-... .+ ..+-...+.|...+++-+.+...+|++||++.|+|.||.++++++....++++++
T Consensus 125 ~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~~rik~~~ 204 (321)
T COG3458 125 QDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDPRIKAVV 204 (321)
T ss_pred ccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcChhhhccc
Confidence 310000 00 0112234789999999999999999999999999999999999998778999999
Q ss_pred ecccC-CCHHHh
Q 006979 603 SLYGV-SIPVII 613 (623)
Q Consensus 603 ~~~g~-~d~~~~ 613 (623)
+.+|. +|..+.
T Consensus 205 ~~~Pfl~df~r~ 216 (321)
T COG3458 205 ADYPFLSDFPRA 216 (321)
T ss_pred ccccccccchhh
Confidence 99996 666544
No 41
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.45 E-value=2.1e-11 Score=122.48 Aligned_cols=253 Identities=13% Similarity=0.108 Sum_probs=149.9
Q ss_pred HHhccCCcc-CceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEE
Q 006979 83 VVSGASKRL-GGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFS 160 (623)
Q Consensus 83 ~~~~~~~~~-~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~ 160 (623)
.+......+ +++.|.+ .+.|||+++...+ ++++++.+|.......|..++ .....+.+..++.
T Consensus 18 ~~~~~~~~~gEgP~w~~~~~~L~w~DI~~~~-----i~r~~~~~g~~~~~~~p~~~~----------~~~~~d~~g~Lv~ 82 (307)
T COG3386 18 TLLDKGATLGEGPVWDPDRGALLWVDILGGR-----IHRLDPETGKKRVFPSPGGFS----------SGALIDAGGRLIA 82 (307)
T ss_pred eEeecccccccCccCcCCCCEEEEEeCCCCe-----EEEecCCcCceEEEECCCCcc----------cceeecCCCeEEE
Confidence 344444555 6779999 8889999999653 889887655333444454421 1112233344454
Q ss_pred eCCCCcEEEEeCCCCCCCc-eecCCC-CCCCCeeecceeeCCCCCEEEEEEec--cCCCCCCceeEEEEEEcCCCCcccc
Q 006979 161 NYKDQRLYKHSIDSKDSSP-LPITPD-YGEPLVSYADGIFDPRFNRYVTVRED--RRQDALNSTTEIVAIALNGQNIQEP 236 (623)
Q Consensus 161 ~~~~~~l~~~d~~~g~~~~-~~Lt~~-~~~~~~~~~d~~~sPdG~~l~~v~~~--~~~~~~~~~~~L~~idl~~g~~~~~ 236 (623)
... .+++++++.+ .. +.++.. .+.+..|.+|...+|+|+.++-.+.. ...........||++|+.++. +
T Consensus 83 ~~~--g~~~~~~~~~--~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~---~ 155 (307)
T COG3386 83 CEH--GVRLLDPDTG--GKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGV---V 155 (307)
T ss_pred Ecc--ccEEEeccCC--ceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCE---E
Confidence 322 3777777655 34 555554 34556899999999999877665551 001112244689999986664 4
Q ss_pred eecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecC-CCceeee--EEEcCCCCCccccCcCceeCCCCc
Q 006979 237 KVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYKR--VCVAGFDPTIVESPTEPKWSSKGE 313 (623)
Q Consensus 237 ~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~ws~DG~ 313 (623)
+.+...-.+.++.+|||||+.|+++... ..+||.++++. .+.+..+ .+..... . +.+...+-..||.
T Consensus 156 ~l~~~~~~~~NGla~SpDg~tly~aDT~-------~~~i~r~~~d~~~g~~~~~~~~~~~~~~-~--G~PDG~~vDadG~ 225 (307)
T COG3386 156 RLLDDDLTIPNGLAFSPDGKTLYVADTP-------ANRIHRYDLDPATGPIGGRRGFVDFDEE-P--GLPDGMAVDADGN 225 (307)
T ss_pred EeecCcEEecCceEECCCCCEEEEEeCC-------CCeEEEEecCcccCccCCcceEEEccCC-C--CCCCceEEeCCCC
Confidence 4444446677889999999998888532 45699998873 2222222 2233222 1 5666777778885
Q ss_pred EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCe
Q 006979 314 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 380 (623)
Q Consensus 314 l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~ 380 (623)
++..+.. +.+.|.++++++.....+.-.......+. |- .++.+.||+++.+.+.
T Consensus 226 lw~~a~~--~g~~v~~~~pdG~l~~~i~lP~~~~t~~~---------Fg--G~~~~~L~iTs~~~~~ 279 (307)
T COG3386 226 LWVAAVW--GGGRVVRFNPDGKLLGEIKLPVKRPTNPA---------FG--GPDLNTLYITSARSGM 279 (307)
T ss_pred EEEeccc--CCceEEEECCCCcEEEEEECCCCCCccce---------Ee--CCCcCEEEEEecCCCC
Confidence 5443333 44689999998554444431111111111 11 0156788888876543
No 42
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.44 E-value=6e-13 Score=129.58 Aligned_cols=135 Identities=18% Similarity=0.145 Sum_probs=104.9
Q ss_pred EEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchh
Q 006979 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541 (623)
Q Consensus 462 ~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~ 541 (623)
+.+.++.+ +.++.+++..|+. ....|.||++|+- ....+.....++.|+++||.|++||+.+..+-...
T Consensus 3 ~~v~~~~~--~~~~~~~~a~P~~-------~~~~P~VIv~hei--~Gl~~~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~ 71 (236)
T COG0412 3 TDVTIPAP--DGELPAYLARPAG-------AGGFPGVIVLHEI--FGLNPHIRDVARRLAKAGYVVLAPDLYGRQGDPTD 71 (236)
T ss_pred cceEeeCC--CceEeEEEecCCc-------CCCCCEEEEEecc--cCCchHHHHHHHHHHhCCcEEEechhhccCCCCCc
Confidence 45777775 4889999999987 4445999999987 33445667789999999999999998763332111
Q ss_pred ------HHHhh---ccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCCceeEEEecccCC
Q 006979 542 ------FRERL---LGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVS 608 (623)
Q Consensus 542 ------~~~~~---~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v~~~g~~ 608 (623)
..... ...+ .....|+.++++||..++.+|++||+++|+|+||.+++.++.+...++|+|++||-.
T Consensus 72 ~~~~~~~~~~~~~~~~~~-~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~~v~a~v~fyg~~ 146 (236)
T COG0412 72 IEDEPAELETGLVERVDP-AEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAPEVKAAVAFYGGL 146 (236)
T ss_pred ccccHHHHhhhhhccCCH-HHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccCCccEEEEecCCC
Confidence 11110 1112 455789999999999999899999999999999999999996554899999999953
No 43
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.43 E-value=8.7e-13 Score=130.21 Aligned_cols=138 Identities=14% Similarity=0.211 Sum_probs=100.9
Q ss_pred EEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcc--cCcCCHHhHHHHcCceEEEEECCCCCCCCch
Q 006979 463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA--RGILNLSIQYWTSRGWAFVDVNYGGSTGYGR 540 (623)
Q Consensus 463 ~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~--~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~ 540 (623)
.+.++.. .| .+.++++.|.. .++.|+||++||...... ...+...+..|+++||.|+.+|+||.|....
T Consensus 2 ~~~l~~~-~g-~~~~~~~~p~~-------~~~~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g 72 (266)
T TIGR03101 2 PFFLDAP-HG-FRFCLYHPPVA-------VGPRGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYGCGDSAG 72 (266)
T ss_pred CEEecCC-CC-cEEEEEecCCC-------CCCceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
Confidence 3556664 44 47788888865 345689999999743211 1233456788999999999999999765533
Q ss_pred hHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHHhhhh
Q 006979 541 EFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVIISEE 616 (623)
Q Consensus 541 ~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~~~~ 616 (623)
.+.. ..+. ...+|+.++++++.+++ .++|.++|+|+||.+++.++ .+|+.++++|...|+.+-..+..+
T Consensus 73 ~~~~---~~~~-~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~~l~~ 142 (266)
T TIGR03101 73 DFAA---ARWD-VWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQLQQ 142 (266)
T ss_pred cccc---CCHH-HHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHHHHHH
Confidence 2211 1121 23689999999998774 46899999999999999888 789999999999999886665544
No 44
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=99.43 E-value=5.4e-13 Score=133.79 Aligned_cols=144 Identities=22% Similarity=0.210 Sum_probs=91.1
Q ss_pred CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCccc--------C----c----CCHHhHHHHcC
Q 006979 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR--------G----I----LNLSIQYWTSR 523 (623)
Q Consensus 460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~--------~----~----~~~~~~~~a~~ 523 (623)
+.|.+.|... ++..++++++.|++. .++.|.||.+||....... . . -.....+|+++
T Consensus 87 ~~EKv~f~~~-p~~~vpaylLvPd~~------~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~ 159 (390)
T PF12715_consen 87 TREKVEFNTT-PGSRVPAYLLVPDGA------KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKR 159 (390)
T ss_dssp EEEEEEE--S-TTB-EEEEEEEETT--------S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTT
T ss_pred EEEEEEEEcc-CCeeEEEEEEecCCC------CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhC
Confidence 6678888887 889999999999873 4778999999986322110 0 0 12357789999
Q ss_pred ceEEEEECCCCCCCCch----------hHHHh------hccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHH
Q 006979 524 GWAFVDVNYGGSTGYGR----------EFRER------LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT 587 (623)
Q Consensus 524 G~~v~~~d~rGs~~~g~----------~~~~~------~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~ 587 (623)
||+|+++|.+|-|+.+. ++... +-..+.....-|.+.+++||..++.||++||+++|+|+||+.
T Consensus 160 GYVvla~D~~g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~ 239 (390)
T PF12715_consen 160 GYVVLAPDALGFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYR 239 (390)
T ss_dssp TSEEEEE--TTSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHH
T ss_pred CCEEEEEccccccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHH
Confidence 99999999998665332 01100 111222333456667999999999999999999999999999
Q ss_pred HHHHhcCCCceeEEEecccCCCH
Q 006979 588 TLAALAFRDTFKAGASLYGVSIP 610 (623)
Q Consensus 588 ~~~~~~~~~~f~a~v~~~g~~d~ 610 (623)
+++++...++++|+|...=++-.
T Consensus 240 a~~LaALDdRIka~v~~~~l~~~ 262 (390)
T PF12715_consen 240 AWWLAALDDRIKATVANGYLCTT 262 (390)
T ss_dssp HHHHHHH-TT--EEEEES-B--H
T ss_pred HHHHHHcchhhHhHhhhhhhhcc
Confidence 99999877888888876555544
No 45
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.42 E-value=1.4e-12 Score=135.11 Aligned_cols=139 Identities=16% Similarity=0.123 Sum_probs=102.4
Q ss_pred CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (623)
Q Consensus 460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g 539 (623)
+++...+... +|..+++..+.|.+. +.+.|+||++||..... ...+...+..|+++||.|+.+|+||.|.+.
T Consensus 31 ~~~~~~~~~~-dg~~l~~~~~~~~~~------~~~~~~VvllHG~~~~~-~~~~~~~~~~L~~~Gy~V~~~D~rGhG~S~ 102 (330)
T PLN02298 31 KGSKSFFTSP-RGLSLFTRSWLPSSS------SPPRALIFMVHGYGNDI-SWTFQSTAIFLAQMGFACFALDLEGHGRSE 102 (330)
T ss_pred ccccceEEcC-CCCEEEEEEEecCCC------CCCceEEEEEcCCCCCc-ceehhHHHHHHHhCCCEEEEecCCCCCCCC
Confidence 4455667777 899999888877541 24568999999984322 224455677899999999999999976543
Q ss_pred hhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979 540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI 609 (623)
Q Consensus 540 ~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d 609 (623)
.. ......-....+|+.+++++|......+..+++|+||||||.+++.++ .+|++++++|+.+|..+
T Consensus 103 ~~---~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~ 170 (330)
T PLN02298 103 GL---RAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCK 170 (330)
T ss_pred Cc---cccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEeccccc
Confidence 21 000001122468999999999876545556899999999999999888 88999999999988754
No 46
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=99.41 E-value=5.2e-13 Score=136.41 Aligned_cols=134 Identities=23% Similarity=0.225 Sum_probs=93.6
Q ss_pred CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (623)
Q Consensus 460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g 539 (623)
..+.++++-. |..|.++++.|.. +++.|+||++-|- .+-....+.....+|+.+|++++.+|.+|.|...
T Consensus 164 ~i~~v~iP~e--g~~I~g~LhlP~~-------~~p~P~VIv~gGl-Ds~qeD~~~l~~~~l~~rGiA~LtvDmPG~G~s~ 233 (411)
T PF06500_consen 164 PIEEVEIPFE--GKTIPGYLHLPSG-------EKPYPTVIVCGGL-DSLQEDLYRLFRDYLAPRGIAMLTVDMPGQGESP 233 (411)
T ss_dssp EEEEEEEEET--TCEEEEEEEESSS-------SS-EEEEEEE--T-TS-GGGGHHHHHCCCHHCT-EEEEE--TTSGGGT
T ss_pred CcEEEEEeeC--CcEEEEEEEcCCC-------CCCCCEEEEeCCc-chhHHHHHHHHHHHHHhCCCEEEEEccCCCcccc
Confidence 4678888875 6899999999986 7888998877544 2222223334556789999999999999976432
Q ss_pred hhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC-CCH
Q 006979 540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV-SIP 610 (623)
Q Consensus 540 ~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~-~d~ 610 (623)
+ + .+..+. -.=..++++||.+.++||.+||+++|.|+|||.+..++ .++++++|+|+..|+ .++
T Consensus 234 ~-~--~l~~D~----~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~~ 299 (411)
T PF06500_consen 234 K-W--PLTQDS----SRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVHHF 299 (411)
T ss_dssp T-T---S-S-C----CHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---SCG
T ss_pred c-C--CCCcCH----HHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHhhh
Confidence 1 1 111111 12355889999999999999999999999999999998 788899999999886 444
No 47
>PRK10566 esterase; Provisional
Probab=99.40 E-value=1.6e-12 Score=128.92 Aligned_cols=124 Identities=19% Similarity=0.192 Sum_probs=86.3
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCC-chhHHHhhccCCc--
Q 006979 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY-GREFRERLLGRWG-- 551 (623)
Q Consensus 475 i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~-g~~~~~~~~~~~g-- 551 (623)
+..+.+.|.+. .+++.|+||++||.+... ..+...++.|+++||.|+++|+||.|.. +..........|.
T Consensus 12 ~~~~~~~p~~~-----~~~~~p~vv~~HG~~~~~--~~~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~ 84 (249)
T PRK10566 12 IEVLHAFPAGQ-----RDTPLPTVFFYHGFTSSK--LVYSYFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQIL 84 (249)
T ss_pred cceEEEcCCCC-----CCCCCCEEEEeCCCCccc--chHHHHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHHHH
Confidence 34455667541 135679999999985433 3566789999999999999999996532 1110011111111
Q ss_pred cchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEeccc
Q 006979 552 IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYG 606 (623)
Q Consensus 552 ~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g 606 (623)
....+|+.++++++.+++.+|++||+++|+|+||++++.++ .+|+ +++++...+
T Consensus 85 ~~~~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~-~~~~~~~~~ 139 (249)
T PRK10566 85 LQNMQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPW-VKCVASLMG 139 (249)
T ss_pred HHHHHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCC-eeEEEEeeC
Confidence 13467888999999999889999999999999999999998 6665 445444433
No 48
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=99.37 E-value=2.1e-12 Score=123.05 Aligned_cols=126 Identities=21% Similarity=0.176 Sum_probs=89.5
Q ss_pred EEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHH-cCceEEEEECCCCCCCCchhH--HHhhccCCcc
Q 006979 476 YAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWT-SRGWAFVDVNYGGSTGYGREF--RERLLGRWGI 552 (623)
Q Consensus 476 ~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a-~~G~~v~~~d~rGs~~~g~~~--~~~~~~~~g~ 552 (623)
...+|.|++.. ..+.|+||.+||.........-......++ ++||+|+.|+-.........| .. .....+.
T Consensus 2 ~Y~lYvP~~~~-----~~~~PLVv~LHG~~~~a~~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~-~~~~~g~ 75 (220)
T PF10503_consen 2 SYRLYVPPGAP-----RGPVPLVVVLHGCGQSAEDFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFS-DDQQRGG 75 (220)
T ss_pred cEEEecCCCCC-----CCCCCEEEEeCCCCCCHHHHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccc-cccccCc
Confidence 45788887621 347899999999954332111111223455 479999999854322222222 22 2233455
Q ss_pred chHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979 553 VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV 607 (623)
Q Consensus 553 ~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~ 607 (623)
.+...+.+.++++.++..||++||.+.|+|.||+|+..++ .+||+|+|+..++|+
T Consensus 76 ~d~~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~ 131 (220)
T PF10503_consen 76 GDVAFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGV 131 (220)
T ss_pred cchhhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeeccc
Confidence 6777888999999999999999999999999999999999 899999999998886
No 49
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.35 E-value=6.1e-11 Score=118.72 Aligned_cols=241 Identities=19% Similarity=0.181 Sum_probs=156.3
Q ss_pred CCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 006979 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (623)
Q Consensus 154 ~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~ 233 (623)
+|.|+|+...+ ||.+++.+| ++++||.. -.-.+.+.++|||++++|.+--.... ....+||+++.++|+
T Consensus 50 GD~IiFt~~Dd--lWe~slk~g--~~~ritS~----lGVvnn~kf~pdGrkvaf~rv~~~ss--~~taDly~v~~e~Ge- 118 (668)
T COG4946 50 GDRIIFTCCDD--LWEYSLKDG--KPLRITSG----LGVVNNPKFSPDGRKVAFSRVMLGSS--LQTADLYVVPSEDGE- 118 (668)
T ss_pred CcEEEEEechH--HHHhhhccC--CeeEEecc----cceeccccCCCCCcEEEEEEEEecCC--CccccEEEEeCCCCc-
Confidence 46899986544 999999988 89999986 45678899999999999965422111 123789999999998
Q ss_pred ccceeccc-CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCC
Q 006979 234 QEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 312 (623)
Q Consensus 234 ~~~~~l~~-~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG 312 (623)
+++++- +..|..-.-|+|||+-|+......|-.. -.+||.+..++.. ...+-.+.. ... --.||
T Consensus 119 --~kRiTyfGr~fT~VaG~~~dg~iiV~TD~~tPF~q--~~~lYkv~~dg~~---~e~LnlGpa-------thi-v~~dg 183 (668)
T COG4946 119 --AKRITYFGRRFTRVAGWIPDGEIIVSTDFHTPFSQ--WTELYKVNVDGIK---TEPLNLGPA-------THI-VIKDG 183 (668)
T ss_pred --EEEEEEeccccceeeccCCCCCEEEEeccCCCccc--ceeeeEEccCCce---eeeccCCce-------eeE-EEeCC
Confidence 777753 4445444469999998876654433222 3568888887652 112211111 111 12455
Q ss_pred cEEEEEeC---------CCC-eeeEEEEecCCC-eEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeE
Q 006979 313 ELFFVTDR---------KNG-FWNLHKWIESNN-EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS 381 (623)
Q Consensus 313 ~l~~~~~~---------~~g-~~~L~~~d~~~~-~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~ 381 (623)
.++.-.+. +.| ...||.-. +++ ..+.+...+..+..|.- -+.++||.+..+|..
T Consensus 184 ~ivigRntydLP~WK~YkGGtrGklWis~-d~g~tFeK~vdl~~~vS~PmI--------------V~~RvYFlsD~eG~G 248 (668)
T COG4946 184 IIVIGRNTYDLPHWKGYKGGTRGKLWISS-DGGKTFEKFVDLDGNVSSPMI--------------VGERVYFLSDHEGVG 248 (668)
T ss_pred EEEEccCcccCcccccccCCccceEEEEe-cCCcceeeeeecCCCcCCceE--------------EcceEEEEecccCcc
Confidence 33322221 011 12455332 333 44555544444444422 357899999999999
Q ss_pred EEEEEeCCCCceeecccCCc-ceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCcceeee
Q 006979 382 YLGILDDFGHSLSLLDIPFT-DIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 440 (623)
Q Consensus 382 ~L~~~d~~~~~~~~lt~~~~-~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~lt 440 (623)
+||..|++++.+++-|.-.. -...++.|+++++|... ..||.+|+++..++.|.
T Consensus 249 nlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~~-----GdIylydP~td~lekld 303 (668)
T COG4946 249 NLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQNA-----GDIYLYDPETDSLEKLD 303 (668)
T ss_pred ceEEeccCCchhhhcCCchhccccccCCCCcEEEEecC-----CcEEEeCCCcCcceeee
Confidence 99999999999887765321 12344889999999876 57999999888766654
No 50
>PLN02442 S-formylglutathione hydrolase
Probab=99.34 E-value=1e-11 Score=125.31 Aligned_cols=147 Identities=19% Similarity=0.230 Sum_probs=94.0
Q ss_pred CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcC-CHHhHHHHcCceEEEEECCCCCC--
Q 006979 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWTSRGWAFVDVNYGGST-- 536 (623)
Q Consensus 460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~-~~~~~~~a~~G~~v~~~d~rGs~-- 536 (623)
..+.+.+.++.-+..+...+|.|... +++++|+|+++||.+........ ....+.++.+||+|+.||..+.|
T Consensus 17 ~~~~~~~~s~~l~~~~~~~vy~P~~~-----~~~~~Pvv~~lHG~~~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~ 91 (283)
T PLN02442 17 FNRRYKHFSSTLGCSMTFSVYFPPAS-----DSGKVPVLYWLSGLTCTDENFIQKSGAQRAAAARGIALVAPDTSPRGLN 91 (283)
T ss_pred EEEEEEEeccccCCceEEEEEcCCcc-----cCCCCCEEEEecCCCcChHHHHHhhhHHHHHhhcCeEEEecCCCCCCCC
Confidence 44566666653577899999999741 15689999999998544322111 12345567789999999975433
Q ss_pred ----------CCchh-HHHhhccCCccchHHH-HH-HHHHHHHhC-CCCCCCceEEEEcChHHHHHHHHh-cCCCceeEE
Q 006979 537 ----------GYGRE-FRERLLGRWGIVDVND-CC-SCATFLVGS-GKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAG 601 (623)
Q Consensus 537 ----------~~g~~-~~~~~~~~~g~~~~~D-~~-~~~~~l~~~-~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~ 601 (623)
+++.. |.+.....|+.....+ +. +..+++.+. ..+|++|++|+|+||||++++.++ .+|++|+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~ 171 (283)
T PLN02442 92 VEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSDNFDQLDTSRASIFGHSMGGHGALTIYLKNPDKYKSV 171 (283)
T ss_pred CCCCccccccCCCcceeeccccCCCcccchhhhHHHHHHHHHHHHHHhcCCCceEEEEEChhHHHHHHHHHhCchhEEEE
Confidence 11111 1111122222111112 22 222233332 236899999999999999999988 889999999
Q ss_pred EecccCCCHH
Q 006979 602 ASLYGVSIPV 611 (623)
Q Consensus 602 v~~~g~~d~~ 611 (623)
++.+|+.|+.
T Consensus 172 ~~~~~~~~~~ 181 (283)
T PLN02442 172 SAFAPIANPI 181 (283)
T ss_pred EEECCccCcc
Confidence 9999998753
No 51
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.33 E-value=3.5e-10 Score=114.30 Aligned_cols=301 Identities=13% Similarity=0.146 Sum_probs=158.3
Q ss_pred cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCCCCcEEE
Q 006979 91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYK 169 (623)
Q Consensus 91 ~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~~~~l~~ 169 (623)
+.+.+|.+ |.++.|...+ +|+..||.++..++ +..+|+..+-. ...++..+..++.++|.... .+|+.
T Consensus 38 F~~~~ft~dG~kllF~s~~---dg~~nly~lDL~t~-~i~QLTdg~g~------~~~g~~~s~~~~~~~Yv~~~-~~l~~ 106 (386)
T PF14583_consen 38 FYQNCFTDDGRKLLFASDF---DGNRNLYLLDLATG-EITQLTDGPGD------NTFGGFLSPDDRALYYVKNG-RSLRR 106 (386)
T ss_dssp TTS--B-TTS-EEEEEE-T---TSS-EEEEEETTT--EEEE---SS-B-------TTT-EE-TTSSEEEEEETT-TEEEE
T ss_pred ecCCCcCCCCCEEEEEecc---CCCcceEEEEcccC-EEEECccCCCC------CccceEEecCCCeEEEEECC-CeEEE
Confidence 45778877 7778776554 47888999998865 77888864300 11133444344477776533 35999
Q ss_pred EeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCC---C----------CCceeEEEEEEcCCCCcccc
Q 006979 170 HSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD---A----------LNSTTEIVAIALNGQNIQEP 236 (623)
Q Consensus 170 ~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~---~----------~~~~~~L~~idl~~g~~~~~ 236 (623)
+|++++ +.+.|-..++ ...-+.....+.|++.++.+....... + ..+...|+.||+.+|+ .
T Consensus 107 vdL~T~--e~~~vy~~p~-~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~---~ 180 (386)
T PF14583_consen 107 VDLDTL--EERVVYEVPD-DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE---R 180 (386)
T ss_dssp EETTT----EEEEEE--T-TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-----E
T ss_pred EECCcC--cEEEEEECCc-ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc---e
Confidence 999987 5555544310 011233344467899988876543221 1 2357899999999998 7
Q ss_pred eecccCCCcccceeeCC-CCCEEEEEEecCCCCCCCc--eEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc
Q 006979 237 KVLVSGSDFYAFPRMDP-RGERMAWIEWHHPNMPWDK--AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 313 (623)
Q Consensus 237 ~~l~~~~~~~~~p~wSP-DG~~la~~~~~~~~~p~~~--~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~ 313 (623)
+.+.....+...+-+|| |...|.|.- .. ||+. .+||+++.++.+ .+.+....+. +.+..--|++||+
T Consensus 181 ~~v~~~~~wlgH~~fsP~dp~li~fCH-EG---pw~~Vd~RiW~i~~dg~~----~~~v~~~~~~--e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 181 KVVFEDTDWLGHVQFSPTDPTLIMFCH-EG---PWDLVDQRIWTINTDGSN----VKKVHRRMEG--ESVGHEFWVPDGS 250 (386)
T ss_dssp EEEEEESS-EEEEEEETTEEEEEEEEE--S----TTTSS-SEEEEETTS-------EESS---TT--EEEEEEEE-TTSS
T ss_pred eEEEecCccccCcccCCCCCCEEEEec-cC---CcceeceEEEEEEcCCCc----ceeeecCCCC--cccccccccCCCC
Confidence 88888888888898998 566777763 22 4664 479999988763 2333222222 5667788999999
Q ss_pred -EEEEEeCCCC-eeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEE-------------EC
Q 006979 314 -LFFVTDRKNG-FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR-------------QN 378 (623)
Q Consensus 314 -l~~~~~~~~g-~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~-------------~~ 378 (623)
++|......+ ...|+.+|+.+++.+.+...+... .+.. ++|++.++=-.. -.
T Consensus 251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~----------H~~s---s~Dg~L~vGDG~d~p~~v~~~~~~~~~ 317 (386)
T PF14583_consen 251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCS----------HFMS---SPDGKLFVGDGGDAPVDVADAGGYKIE 317 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-TTT--EEEEEEE-SEE----------EEEE----TTSSEEEEEE----------------
T ss_pred EEEEEeecCCCCceEEEeeCCCCCCceEEEeCCcee----------eeEE---cCCCCEEEecCCCCCccccccccceec
Confidence 8887764233 356889999998877665332110 0111 113322211000 01
Q ss_pred CeEEEEEEeCCCCceeecccCCc-------------ceEeeeecCCEEEEEEecCCCCCeEEEEEcC
Q 006979 379 GRSYLGILDDFGHSLSLLDIPFT-------------DIDNITLGNDCLFVEGASGVEPSSVAKVTLD 432 (623)
Q Consensus 379 g~~~L~~~d~~~~~~~~lt~~~~-------------~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~ 432 (623)
...-||++++..+....|..... ..-.+++|++.|+|.+. ...++.||.+++.
T Consensus 318 ~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd-~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 318 NDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSD-MEGPPAVYLVEIP 383 (386)
T ss_dssp ---EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE--TTSS-EEEEEE--
T ss_pred CCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECC-CCCCccEEEEeCc
Confidence 23468888888776654443210 11234889999988764 4667899998864
No 52
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.33 E-value=1.9e-11 Score=123.03 Aligned_cols=147 Identities=19% Similarity=0.191 Sum_probs=94.9
Q ss_pred CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHH-HcCceEEEEECC--CCCC
Q 006979 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYW-TSRGWAFVDVNY--GGST 536 (623)
Q Consensus 460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~-a~~G~~v~~~d~--rGs~ 536 (623)
+.+.+++.+...+.++...+|.|++ +. .++.|+|+++||.+............+.+ ++.||.|++||. ||.+
T Consensus 12 ~~~~~~~~s~~~~~~~~~~v~~P~~--~~---~~~~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~ 86 (275)
T TIGR02821 12 TQGFYRHKSETCGVPMTFGVFLPPQ--AA---AGPVPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTG 86 (275)
T ss_pred EEEEEEEeccccCCceEEEEEcCCC--cc---CCCCCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCC
Confidence 3445566655356778889999976 22 34689999999986443322222233445 457999999997 6654
Q ss_pred CCch--h---------HHHhhccCCc--cchHHHHHHHHHHHHhC-CCCCCCceEEEEcChHHHHHHHHh-cCCCceeEE
Q 006979 537 GYGR--E---------FRERLLGRWG--IVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAG 601 (623)
Q Consensus 537 ~~g~--~---------~~~~~~~~~g--~~~~~D~~~~~~~l~~~-~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~ 601 (623)
..+. . |.+.....+. ......+...+..++++ ..+|++|++|+|+||||++++.++ .+|+.|+++
T Consensus 87 ~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~ 166 (275)
T TIGR02821 87 IAGEDDAWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSV 166 (275)
T ss_pred CCCCcccccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEE
Confidence 3221 1 1111011111 11233334444444443 448899999999999999999999 889999999
Q ss_pred EecccCCCHH
Q 006979 602 ASLYGVSIPV 611 (623)
Q Consensus 602 v~~~g~~d~~ 611 (623)
++.+|+.++.
T Consensus 167 ~~~~~~~~~~ 176 (275)
T TIGR02821 167 SAFAPIVAPS 176 (275)
T ss_pred EEECCccCcc
Confidence 9999997653
No 53
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=99.32 E-value=6.4e-12 Score=122.01 Aligned_cols=123 Identities=17% Similarity=0.142 Sum_probs=88.7
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCC-CchhHH--Hhhcc---
Q 006979 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG-YGREFR--ERLLG--- 548 (623)
Q Consensus 475 i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~-~g~~~~--~~~~~--- 548 (623)
+.+++..|++ .++.|.||++|+..+ ..+.....+..|+++||.|++||+.+..+ ...... .....
T Consensus 1 ~~ay~~~P~~-------~~~~~~Vvv~~d~~G--~~~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~ 71 (218)
T PF01738_consen 1 IDAYVARPEG-------GGPRPAVVVIHDIFG--LNPNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELF 71 (218)
T ss_dssp EEEEEEEETT-------SSSEEEEEEE-BTTB--S-HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCH
T ss_pred CeEEEEeCCC-------CCCCCEEEEEcCCCC--CchHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHH
Confidence 4678888986 457899999998732 33444567899999999999999876544 111111 11111
Q ss_pred -CCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCCceeEEEeccc
Q 006979 549 -RWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYG 606 (623)
Q Consensus 549 -~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v~~~g 606 (623)
........|+.+++++|.+++.++.+||+++|+|+||.+++.++...+.++|+|+.+|
T Consensus 72 ~~~~~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~~~~~a~v~~yg 130 (218)
T PF01738_consen 72 APRPEQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARDPRVDAAVSFYG 130 (218)
T ss_dssp HHSHHHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCTTTSSEEEEES-
T ss_pred hhhHHHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhccccceEEEEcC
Confidence 1122346888999999999998999999999999999999999955578999999999
No 54
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=99.30 E-value=1e-11 Score=131.25 Aligned_cols=135 Identities=21% Similarity=0.257 Sum_probs=109.9
Q ss_pred EEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcC----CH--HhHHHHcCceEEEEECCCCC
Q 006979 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL----NL--SIQYWTSRGWAFVDVNYGGS 535 (623)
Q Consensus 462 ~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~----~~--~~~~~a~~G~~v~~~d~rGs 535 (623)
..+.++.. ||..|+.-+|.|++ .++.|+|+..+=.|.......+ .. ..++|+.+||+|+.+|.||+
T Consensus 20 ~~v~V~MR-DGvrL~~dIy~Pa~-------~g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~ 91 (563)
T COG2936 20 RDVMVPMR-DGVRLAADIYRPAG-------AGPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGR 91 (563)
T ss_pred eeeeEEec-CCeEEEEEEEccCC-------CCCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEeccccc
Confidence 45778888 99999999999998 7889999998844433332111 11 12379999999999999999
Q ss_pred CCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979 536 TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP 610 (623)
Q Consensus 536 ~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~ 610 (623)
+++...+.. +...+.+|-.+.|+||++|++.+ .+|+++|.||+|+..+++| .+|.-.||++...+..|+
T Consensus 92 ~~SeG~~~~-----~~~~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D~ 161 (563)
T COG2936 92 GGSEGVFDP-----ESSREAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVDR 161 (563)
T ss_pred ccCCcccce-----eccccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeeccccccccc
Confidence 988776543 22258899999999999999996 7999999999999999999 666778999999999996
No 55
>PRK10162 acetyl esterase; Provisional
Probab=99.28 E-value=3.1e-11 Score=123.91 Aligned_cols=130 Identities=17% Similarity=0.205 Sum_probs=99.5
Q ss_pred cEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCccc-CcCCHHhHHHHc-CceEEEEECCCCCCCC
Q 006979 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GILNLSIQYWTS-RGWAFVDVNYGGSTGY 538 (623)
Q Consensus 461 ~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~-~~~~~~~~~~a~-~G~~v~~~d~rGs~~~ 538 (623)
.+.+.++.. +| .+.+.+|.|.. ...|+||++|||.+.... ..+......++. .|+.|+.+|||.+.++
T Consensus 57 ~~~~~i~~~-~g-~i~~~~y~P~~--------~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~ 126 (318)
T PRK10162 57 TRAYMVPTP-YG-QVETRLYYPQP--------DSQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEA 126 (318)
T ss_pred EEEEEEecC-CC-ceEEEEECCCC--------CCCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCC
Confidence 567778776 56 58999999954 235899999999754333 244556777877 5999999999986542
Q ss_pred chhHHHhhccCCccchHHHHHHHHHHHHhC---CCCCCCceEEEEcChHHHHHHHHh-cC------CCceeEEEecccCC
Q 006979 539 GREFRERLLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAAL-AF------RDTFKAGASLYGVS 608 (623)
Q Consensus 539 g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~---~~~d~~rv~i~G~S~GG~~~~~~~-~~------~~~f~a~v~~~g~~ 608 (623)
. + ....+|+.++++|+.++ -.+|++||+|+|+|+||.+++.++ .. +..++++|.++|+.
T Consensus 127 ~----------~-p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~ 195 (318)
T PRK10162 127 R----------F-PQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLY 195 (318)
T ss_pred C----------C-CCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCcc
Confidence 1 1 22479999999999764 247999999999999999999877 31 35789999999998
Q ss_pred CHH
Q 006979 609 IPV 611 (623)
Q Consensus 609 d~~ 611 (623)
|+.
T Consensus 196 ~~~ 198 (318)
T PRK10162 196 GLR 198 (318)
T ss_pred CCC
Confidence 763
No 56
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.28 E-value=3.4e-10 Score=112.03 Aligned_cols=214 Identities=15% Similarity=0.151 Sum_probs=129.4
Q ss_pred CceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEE-eCCEEEEEeCCCCcEEE
Q 006979 92 GGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRI-FGDTVIFSNYKDQRLYK 169 (623)
Q Consensus 92 ~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~-s~d~l~f~~~~~~~l~~ 169 (623)
++|.|++ ++.+||++.... .|++++..+ ....+...+ . . .+.... .++.+++... +.+.+
T Consensus 3 Egp~~d~~~g~l~~~D~~~~-----~i~~~~~~~--~~~~~~~~~-~-------~-~G~~~~~~~g~l~v~~~--~~~~~ 64 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGG-----RIYRVDPDT--GEVEVIDLP-G-------P-NGMAFDRPDGRLYVADS--GGIAV 64 (246)
T ss_dssp EEEEEETTTTEEEEEETTTT-----EEEEEETTT--TEEEEEESS-S-------E-EEEEEECTTSEEEEEET--TCEEE
T ss_pred cceEEECCCCEEEEEEcCCC-----EEEEEECCC--CeEEEEecC-C-------C-ceEEEEccCCEEEEEEc--CceEE
Confidence 5789998 999999997643 388887763 232222211 0 0 122222 2346666643 33666
Q ss_pred EeCCCCCCCceecCCC-CCC-CCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCccc
Q 006979 170 HSIDSKDSSPLPITPD-YGE-PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYA 247 (623)
Q Consensus 170 ~d~~~g~~~~~~Lt~~-~~~-~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~ 247 (623)
+|++++ ..+.+... .+. +..+.+|..++|+|+ |++...............||+++.+ ++ ++.+..+..+.+
T Consensus 65 ~d~~~g--~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~---~~~~~~~~~~pN 137 (246)
T PF08450_consen 65 VDPDTG--KVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GK---VTVVADGLGFPN 137 (246)
T ss_dssp EETTTT--EEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE---EEEEEEEESSEE
T ss_pred EecCCC--cEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-Ce---EEEEecCccccc
Confidence 788876 55555443 112 467889999999998 4444332221111112789999998 65 566666666677
Q ss_pred ceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCc-eeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeee
Q 006979 248 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWN 326 (623)
Q Consensus 248 ~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~ 326 (623)
+.+|||||+.|++.... ..+|+.++++..+. +..++++...... ...+.......+|.|| ++.. +...
T Consensus 138 Gi~~s~dg~~lyv~ds~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~g~pDG~~vD~~G~l~-va~~--~~~~ 206 (246)
T PF08450_consen 138 GIAFSPDGKTLYVADSF-------NGRIWRFDLDADGGELSNRRVFIDFPGG-PGYPDGLAVDSDGNLW-VADW--GGGR 206 (246)
T ss_dssp EEEEETTSSEEEEEETT-------TTEEEEEEEETTTCCEEEEEEEEE-SSS-SCEEEEEEEBTTS-EE-EEEE--TTTE
T ss_pred ceEECCcchheeecccc-------cceeEEEeccccccceeeeeeEEEcCCC-CcCCCcceEcCCCCEE-EEEc--CCCE
Confidence 88999999999877532 45699999986543 4555555332211 0236678899999654 4554 4457
Q ss_pred EEEEecCCCeEEEEe
Q 006979 327 LHKWIESNNEVLAIY 341 (623)
Q Consensus 327 L~~~d~~~~~~~~l~ 341 (623)
|+++|+++.....+.
T Consensus 207 I~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 207 IVVFDPDGKLLREIE 221 (246)
T ss_dssp EEEEETTSCEEEEEE
T ss_pred EEEECCCccEEEEEc
Confidence 999999844444444
No 57
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.28 E-value=2.1e-11 Score=127.37 Aligned_cols=135 Identities=13% Similarity=0.078 Sum_probs=97.3
Q ss_pred EEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhH
Q 006979 463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREF 542 (623)
Q Consensus 463 ~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~ 542 (623)
+..+.+. +|.++.+..+.|.+ +++.|+||++||.+... ...+...+..|+++||.|+.+|+||.|.+....
T Consensus 63 ~~~~~~~-~g~~l~~~~~~p~~-------~~~~~~iv~lHG~~~~~-~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~ 133 (349)
T PLN02385 63 ESYEVNS-RGVEIFSKSWLPEN-------SRPKAAVCFCHGYGDTC-TFFFEGIARKIASSGYGVFAMDYPGFGLSEGLH 133 (349)
T ss_pred eeeEEcC-CCCEEEEEEEecCC-------CCCCeEEEEECCCCCcc-chHHHHHHHHHHhCCCEEEEecCCCCCCCCCCC
Confidence 3344445 89999998888865 45568999999984321 112345678899999999999999976543210
Q ss_pred HHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979 543 RERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI 609 (623)
Q Consensus 543 ~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d 609 (623)
.....+ ...++|+.+.++++..+...+..++.++||||||.+++.++ .+|+.++++|..+|...
T Consensus 134 --~~~~~~-~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~ 198 (349)
T PLN02385 134 --GYIPSF-DDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCK 198 (349)
T ss_pred --CCcCCH-HHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEeccccc
Confidence 000011 12367788888888765455667899999999999999988 88999999999988653
No 58
>PLN00021 chlorophyllase
Probab=99.25 E-value=5.2e-11 Score=120.95 Aligned_cols=118 Identities=22% Similarity=0.224 Sum_probs=90.6
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCcc
Q 006979 473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI 552 (623)
Q Consensus 473 ~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~ 552 (623)
..+++.++.|.. .+++|+||++||+.. ....|...++.++++||.|+++|++|..+.+ ..
T Consensus 37 ~~~p~~v~~P~~-------~g~~PvVv~lHG~~~--~~~~y~~l~~~Las~G~~VvapD~~g~~~~~-----------~~ 96 (313)
T PLN00021 37 PPKPLLVATPSE-------AGTYPVLLFLHGYLL--YNSFYSQLLQHIASHGFIVVAPQLYTLAGPD-----------GT 96 (313)
T ss_pred CCceEEEEeCCC-------CCCCCEEEEECCCCC--CcccHHHHHHHHHhCCCEEEEecCCCcCCCC-----------ch
Confidence 457888999976 677899999999843 3345667788899999999999998743211 12
Q ss_pred chHHHHHHHHHHHHhC--------CCCCCCceEEEEcChHHHHHHHHh-cCC-----CceeEEEecccCCCH
Q 006979 553 VDVNDCCSCATFLVGS--------GKADEKRLCITGGSAGGYTTLAAL-AFR-----DTFKAGASLYGVSIP 610 (623)
Q Consensus 553 ~~~~D~~~~~~~l~~~--------~~~d~~rv~i~G~S~GG~~~~~~~-~~~-----~~f~a~v~~~g~~d~ 610 (623)
.+.+|+.++++|+.+. ..+|.+|++|+|||+||++++.++ .++ ..|+++|...|+..+
T Consensus 97 ~~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~ 168 (313)
T PLN00021 97 DEIKDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGT 168 (313)
T ss_pred hhHHHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeecccccc
Confidence 3456777778887752 236789999999999999999998 665 368999999987654
No 59
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.25 E-value=2.5e-11 Score=116.53 Aligned_cols=127 Identities=25% Similarity=0.229 Sum_probs=94.5
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCc-CCHHhHHHHcCceEEEEECCCCCCCCchhHHHhh---
Q 006979 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERL--- 546 (623)
Q Consensus 471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~-~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~--- 546 (623)
+|...+++||.|... .+..|+||++||+........ ..-+-......||.|+.||- +.++|....
T Consensus 43 ~g~~r~y~l~vP~g~------~~~apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yPdg-----~~~~wn~~~~~~ 111 (312)
T COG3509 43 NGLKRSYRLYVPPGL------PSGAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYPDG-----YDRAWNANGCGN 111 (312)
T ss_pred CCCccceEEEcCCCC------CCCCCEEEEEecCCCChHHhhcccchhhhhcccCcEEECcCc-----cccccCCCcccc
Confidence 577888999999873 344599999999954433221 12223333457999999952 333331111
Q ss_pred -----ccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979 547 -----LGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608 (623)
Q Consensus 547 -----~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~ 608 (623)
...-+..|+..+.+.+..|+.+.-|||+||.|.|.|.||.|+..++ .+|++|+|+..++|..
T Consensus 112 ~~~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~ 179 (312)
T COG3509 112 WFGPADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLL 179 (312)
T ss_pred cCCcccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeeccc
Confidence 1234567788899999999999899999999999999999999999 8899999999888865
No 60
>PRK10985 putative hydrolase; Provisional
Probab=99.22 E-value=1.1e-10 Score=120.36 Aligned_cols=134 Identities=17% Similarity=0.142 Sum_probs=91.7
Q ss_pred EeecCCCCeEEEEEEE-cCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHH
Q 006979 465 EFPTEVPGQKAYAYYY-PPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR 543 (623)
Q Consensus 465 ~~~~~~dg~~i~~~l~-~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~ 543 (623)
.+... ||..+..... .|.. ....|+||++||.++..........+..++++||.|+.+|+||.++......
T Consensus 35 ~~~~~-dg~~~~l~w~~~~~~-------~~~~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~~ 106 (324)
T PRK10985 35 RLELP-DGDFVDLAWSEDPAQ-------ARHKPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGEPNRLH 106 (324)
T ss_pred EEECC-CCCEEEEecCCCCcc-------CCCCCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCCccCCc
Confidence 34555 7776654322 2321 3456899999998644333233456788999999999999999765432111
Q ss_pred HhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCC--ceeEEEecccCCCHHH
Q 006979 544 ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRD--TFKAGASLYGVSIPVI 612 (623)
Q Consensus 544 ~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~--~f~a~v~~~g~~d~~~ 612 (623)
..+.....+|+..+++++.++. ...++.++|||+||.+++.++ .+++ .++++|++++..|+..
T Consensus 107 ----~~~~~~~~~D~~~~i~~l~~~~--~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~ 172 (324)
T PRK10985 107 ----RIYHSGETEDARFFLRWLQREF--GHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEA 172 (324)
T ss_pred ----ceECCCchHHHHHHHHHHHHhC--CCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHH
Confidence 1112234789999999998863 246899999999999877666 5543 4889999999888653
No 61
>PHA02857 monoglyceride lipase; Provisional
Probab=99.22 E-value=6.1e-11 Score=119.58 Aligned_cols=124 Identities=19% Similarity=0.187 Sum_probs=94.1
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCC
Q 006979 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (623)
Q Consensus 471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~ 550 (623)
||..+++.+|.|.. .+.|+|+++||.. .....|...++.|+++||.|+++|+||.|.+.... .....+
T Consensus 9 ~g~~l~~~~~~~~~--------~~~~~v~llHG~~--~~~~~~~~~~~~l~~~g~~via~D~~G~G~S~~~~--~~~~~~ 76 (276)
T PHA02857 9 DNDYIYCKYWKPIT--------YPKALVFISHGAG--EHSGRYEELAENISSLGILVFSHDHIGHGRSNGEK--MMIDDF 76 (276)
T ss_pred CCCEEEEEeccCCC--------CCCEEEEEeCCCc--cccchHHHHHHHHHhCCCEEEEccCCCCCCCCCcc--CCcCCH
Confidence 79999999998842 3458999999983 34456777899999999999999999976543210 001111
Q ss_pred ccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979 551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI 609 (623)
Q Consensus 551 g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d 609 (623)
. ..++|+...++++.+. ...+++.++|||+||.+++.++ .+|++++++|..+|..+
T Consensus 77 ~-~~~~d~~~~l~~~~~~--~~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~ 133 (276)
T PHA02857 77 G-VYVRDVVQHVVTIKST--YPGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVN 133 (276)
T ss_pred H-HHHHHHHHHHHHHHhh--CCCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccc
Confidence 1 2367888888877654 2246899999999999999988 88999999999999765
No 62
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.18 E-value=8.9e-09 Score=104.22 Aligned_cols=279 Identities=11% Similarity=0.121 Sum_probs=142.6
Q ss_pred CCCCCCCcccCCCCC-ccceeeeecCCceEEEeCCEEEEEeCCCC--cEEEEeCCCCCCCceecCCCCCCCCeeecceee
Q 006979 122 AKAGDEPSDITPKEY-AVRTTAQEYGGGAFRIFGDTVIFSNYKDQ--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIF 198 (623)
Q Consensus 122 ~~~gg~~~~l~p~~~-~~r~~~~~~g~~~~~~s~d~l~f~~~~~~--~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~ 198 (623)
+.+|.+..+|++... +.+ .+= -..+|...+++++|....++ +||.+||+++ +.+|||.+. ........+
T Consensus 17 ~~TG~~VtrLT~~~~~~h~--~YF-~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~--~i~QLTdg~---g~~~~g~~~ 88 (386)
T PF14583_consen 17 PDTGHRVTRLTPPDGHSHR--LYF-YQNCFTDDGRKLLFASDFDGNRNLYLLDLATG--EITQLTDGP---GDNTFGGFL 88 (386)
T ss_dssp TTT--EEEE-S-TTS-EE-----T-TS--B-TTS-EEEEEE-TTSS-EEEEEETTT---EEEE---SS----B-TTT-EE
T ss_pred CCCCceEEEecCCCCcccc--eee-cCCCcCCCCCEEEEEeccCCCcceEEEEcccC--EEEECccCC---CCCccceEE
Confidence 444445566666542 112 111 12344444458888876665 5999999998 899999962 122235679
Q ss_pred CCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceeccc-CCCcccceee--CCCCCEEEEEEecCCCC-------
Q 006979 199 DPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-GSDFYAFPRM--DPRGERMAWIEWHHPNM------- 268 (623)
Q Consensus 199 sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~-~~~~~~~p~w--SPDG~~la~~~~~~~~~------- 268 (623)
+|+++.++|+... ..|+++|+++.+ .+.|.. ..++...-.| ..|+++++.++..+...
T Consensus 89 s~~~~~~~Yv~~~---------~~l~~vdL~T~e---~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~ 156 (386)
T PF14583_consen 89 SPDDRALYYVKNG---------RSLRRVDLDTLE---ERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWK 156 (386)
T ss_dssp -TTSSEEEEEETT---------TEEEEEETTT-----EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHH
T ss_pred ecCCCeEEEEECC---------CeEEEEECCcCc---EEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccH
Confidence 9999999998642 469999999987 556643 3445443455 56799988887543321
Q ss_pred -------CCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCC-c-EEEEEeCCCC--eeeEEEEecCCCeE
Q 006979 269 -------PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG-E-LFFVTDRKNG--FWNLHKWIESNNEV 337 (623)
Q Consensus 269 -------p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG-~-l~~~~~~~~g--~~~L~~~d~~~~~~ 337 (623)
....++|+.+|+.++. .+.++.. . ..+..+.++|.. . +.|+..-.-. ..+||.++.++...
T Consensus 157 ~f~e~~~a~p~~~i~~idl~tG~---~~~v~~~-~----~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~ 228 (386)
T PF14583_consen 157 GFREFYEARPHCRIFTIDLKTGE---RKVVFED-T----DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV 228 (386)
T ss_dssp HHHHHHHC---EEEEEEETTT-----EEEEEEE-S----S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---
T ss_pred HHHHHHhhCCCceEEEEECCCCc---eeEEEec-C----ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc
Confidence 1135789999999872 3444443 3 234467778753 3 4454432111 24899999988887
Q ss_pred EEEeec--ccccccccccccCcceeEEeecCCCCEEEEEEEE-CC-eEEEEEEeCCCCceeecccCCcceEee-eecCCE
Q 006979 338 LAIYSL--DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ-NG-RSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDC 412 (623)
Q Consensus 338 ~~l~~~--~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~-~g-~~~L~~~d~~~~~~~~lt~~~~~v~~~-~~~~~~ 412 (623)
+.+... ...++..-|.+ ||..|++.+.. .+ ...|+.+|+++++.+.+..-.+...-. +.+++.
T Consensus 229 ~~v~~~~~~e~~gHEfw~~------------DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~L 296 (386)
T PF14583_consen 229 KKVHRRMEGESVGHEFWVP------------DGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCSHFMSSPDGKL 296 (386)
T ss_dssp EESS---TTEEEEEEEE-T------------TSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-SEEEEEE-TTSSE
T ss_pred eeeecCCCCcccccccccC------------CCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCceeeeEEcCCCCE
Confidence 777632 22233344544 88888886653 33 446999999998877654332222222 455554
Q ss_pred EEEEEecCC------------CCCeEEEEEcCCCcceeee
Q 006979 413 LFVEGASGV------------EPSSVAKVTLDDHKLKAVD 440 (623)
Q Consensus 413 ~~~~~~s~~------------~~~~ly~~~l~~~~~~~lt 440 (623)
++-=+++.. .-+-||+++++.++.+.|.
T Consensus 297 ~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~ 336 (386)
T PF14583_consen 297 FVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLA 336 (386)
T ss_dssp EEEEE-------------------EEEEEETTTTEEEEEE
T ss_pred EEecCCCCCccccccccceecCCcEEEEeccccCceeeee
Confidence 443333211 1236788888877765554
No 63
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.17 E-value=1.2e-07 Score=93.18 Aligned_cols=283 Identities=13% Similarity=0.113 Sum_probs=156.5
Q ss_pred CCHHHHhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCC--ceEEEeCC
Q 006979 79 LTADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGG--GAFRIFGD 155 (623)
Q Consensus 79 ~t~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~--~~~~~s~d 155 (623)
+++-.+.....++.-+.++| ..++|-+ .++.+.|...-++.+..+| .... +... ...|- .-.+++.+
T Consensus 30 l~~~~~v~~~~nptyl~~~~~~~~LY~v-~~~~~~ggvaay~iD~~~G-~Lt~-ln~~-------~~~g~~p~yvsvd~~ 99 (346)
T COG2706 30 LSLLQLVAELGNPTYLAVNPDQRHLYVV-NEPGEEGGVAAYRIDPDDG-RLTF-LNRQ-------TLPGSPPCYVSVDED 99 (346)
T ss_pred cchhhhccccCCCceEEECCCCCEEEEE-EecCCcCcEEEEEEcCCCC-eEEE-eecc-------ccCCCCCeEEEECCC
Confidence 34444555556777889998 4455554 4555578887888876544 2222 1111 11111 22344444
Q ss_pred -EEEE-EeCCCCcEEEEeCCC-CCCCcee----cCCCCCCCCee-----ecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 006979 156 -TVIF-SNYKDQRLYKHSIDS-KDSSPLP----ITPDYGEPLVS-----YADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (623)
Q Consensus 156 -~l~f-~~~~~~~l~~~d~~~-g~~~~~~----Lt~~~~~~~~~-----~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L 223 (623)
+.+| .+...+.|-++.++. | .... +......+..| .-...++|+|++|+.+.--. .++
T Consensus 100 g~~vf~AnY~~g~v~v~p~~~dG--~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~--------Dri 169 (346)
T COG2706 100 GRFVFVANYHSGSVSVYPLQADG--SLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGT--------DRI 169 (346)
T ss_pred CCEEEEEEccCceEEEEEcccCC--ccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCC--------ceE
Confidence 3444 445556666666643 2 2211 11111111111 11234899999887654321 457
Q ss_pred EEEEcCCCCccccee--cccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCC-CceeeeEEEcCCCCCcc
Q 006979 224 VAIALNGQNIQEPKV--LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN-GDVYKRVCVAGFDPTIV 300 (623)
Q Consensus 224 ~~idl~~g~~~~~~~--l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~-~~~~~~~~~~~~~~~~~ 300 (623)
++++++.|..+...+ +..+.+ .....|.|+||..|.+. .- .++|-++..+.. +.+...+.+.-.+.++.
T Consensus 170 ~~y~~~dg~L~~~~~~~v~~G~G-PRHi~FHpn~k~aY~v~-EL------~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~ 241 (346)
T COG2706 170 FLYDLDDGKLTPADPAEVKPGAG-PRHIVFHPNGKYAYLVN-EL------NSTVDVLEYNPAVGKFEELQTIDTLPEDFT 241 (346)
T ss_pred EEEEcccCccccccccccCCCCC-cceEEEcCCCcEEEEEe-cc------CCEEEEEEEcCCCceEEEeeeeccCccccC
Confidence 777777776321111 112211 12345999999555443 32 345666666654 33333333222221110
Q ss_pred --ccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEEC
Q 006979 301 --ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN 378 (623)
Q Consensus 301 --~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~ 378 (623)
.....+.-++||+++|++++..+.-.++.+|+.+++++.+.....+-..| +.|.+.+ .++.|+.+..++
T Consensus 242 g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~P------R~F~i~~---~g~~Liaa~q~s 312 (346)
T COG2706 242 GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFP------RDFNINP---SGRFLIAANQKS 312 (346)
T ss_pred CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCC------ccceeCC---CCCEEEEEccCC
Confidence 23456778999998889998666667788999999877665322221111 3444543 677777777777
Q ss_pred CeEEEEEEeCCCCceeeccc
Q 006979 379 GRSYLGILDDFGHSLSLLDI 398 (623)
Q Consensus 379 g~~~L~~~d~~~~~~~~lt~ 398 (623)
..-.+|++|.++|.+..+..
T Consensus 313 d~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 313 DNITVFERDKETGRLTLLGR 332 (346)
T ss_pred CcEEEEEEcCCCceEEeccc
Confidence 88899999999999887654
No 64
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=99.17 E-value=5.4e-11 Score=130.35 Aligned_cols=129 Identities=25% Similarity=0.321 Sum_probs=94.0
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcC-c-eEEEEECCC-CCCCCchhHHHhhccC
Q 006979 473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSR-G-WAFVDVNYG-GSTGYGREFRERLLGR 549 (623)
Q Consensus 473 ~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~-G-~~v~~~d~r-Gs~~~g~~~~~~~~~~ 549 (623)
..++..+|.|.... ++++.|+||++|||+......... ....++.+ + ++|+.+||| |..|+.........++
T Consensus 77 dcl~l~i~~p~~~~----~~~~~pv~v~ihGG~~~~g~~~~~-~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~~~~~n 151 (493)
T cd00312 77 DCLYLNVYTPKNTK----PGNSLPVMVWIHGGGFMFGSGSLY-PGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPGN 151 (493)
T ss_pred cCCeEEEEeCCCCC----CCCCCCEEEEEcCCccccCCCCCC-ChHHHHhcCCCEEEEEecccccccccccCCCCCCCcc
Confidence 35777888887521 156789999999997544433332 23445543 3 999999999 8777755432223334
Q ss_pred CccchHHHHHHHHHHHHhC---CCCCCCceEEEEcChHHHHHHHHhcC---CCceeEEEecccCCC
Q 006979 550 WGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGVSI 609 (623)
Q Consensus 550 ~g~~~~~D~~~~~~~l~~~---~~~d~~rv~i~G~S~GG~~~~~~~~~---~~~f~a~v~~~g~~d 609 (623)
+| ..|+.+|++|+.++ --.||+||.|+|+|+||++++.++.. +.+|+++|+.+|...
T Consensus 152 ~g---~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 152 YG---LKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred hh---HHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 44 78999999999875 13799999999999999999988843 468999999988654
No 65
>PRK10749 lysophospholipase L2; Provisional
Probab=99.16 E-value=2e-10 Score=118.83 Aligned_cols=136 Identities=15% Similarity=0.021 Sum_probs=95.6
Q ss_pred CCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCC
Q 006979 459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY 538 (623)
Q Consensus 459 ~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~ 538 (623)
...+...+... +|..++...+.|.. +.|.||++||.. .....|...+..++++||.|+.+|+||.|.+
T Consensus 28 ~~~~~~~~~~~-~g~~l~~~~~~~~~---------~~~~vll~HG~~--~~~~~y~~~~~~l~~~g~~v~~~D~~G~G~S 95 (330)
T PRK10749 28 RQREEAEFTGV-DDIPIRFVRFRAPH---------HDRVVVICPGRI--ESYVKYAELAYDLFHLGYDVLIIDHRGQGRS 95 (330)
T ss_pred hhccceEEEcC-CCCEEEEEEccCCC---------CCcEEEEECCcc--chHHHHHHHHHHHHHCCCeEEEEcCCCCCCC
Confidence 45566667666 88889988776632 236899999973 3333455667788999999999999998766
Q ss_pred chhHHHhhccCC--ccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979 539 GREFRERLLGRW--GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608 (623)
Q Consensus 539 g~~~~~~~~~~~--g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~ 608 (623)
.+.......+.. -..-++|+.+.++.+.+. .+..++.++||||||.+++.++ .+|+.++++|..+|..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~ 166 (330)
T PRK10749 96 GRLLDDPHRGHVERFNDYVDDLAAFWQQEIQP--GPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMF 166 (330)
T ss_pred CCCCCCCCcCccccHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchh
Confidence 532211001111 012245677777766544 2457899999999999999877 8899999999998864
No 66
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.16 E-value=1.9e-10 Score=120.93 Aligned_cols=134 Identities=15% Similarity=0.073 Sum_probs=97.8
Q ss_pred EEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchh
Q 006979 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541 (623)
Q Consensus 462 ~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~ 541 (623)
....+... ++..++...|.|.. +++.|+||++||... ....|...+..|+++||.|+.+|+||.|...+.
T Consensus 111 ~~~~~~~~-~~~~l~~~~~~p~~-------~~~~~~Vl~lHG~~~--~~~~~~~~a~~L~~~Gy~V~~~D~rGhG~S~~~ 180 (395)
T PLN02652 111 ATSLFYGA-RRNALFCRSWAPAA-------GEMRGILIIIHGLNE--HSGRYLHFAKQLTSCGFGVYAMDWIGHGGSDGL 180 (395)
T ss_pred EEEEEECC-CCCEEEEEEecCCC-------CCCceEEEEECCchH--HHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCC
Confidence 44556666 78889999999964 445689999999843 333456778889999999999999997764332
Q ss_pred HHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCC---ceeEEEecccCCCH
Q 006979 542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRD---TFKAGASLYGVSIP 610 (623)
Q Consensus 542 ~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~---~f~a~v~~~g~~d~ 610 (623)
.. .........+|+.++++++..+. +..++.|+|||+||.+++.++.+|+ .++++|..+|..++
T Consensus 181 ~~---~~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~~p~~~~~v~glVL~sP~l~~ 247 (395)
T PLN02652 181 HG---YVPSLDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAASYPSIEDKLEGIVLTSPALRV 247 (395)
T ss_pred CC---CCcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHhccCcccccceEEEECccccc
Confidence 10 00011123578888999987652 2358999999999999998776654 78999999987644
No 67
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=99.15 E-value=1.7e-10 Score=103.72 Aligned_cols=132 Identities=17% Similarity=0.232 Sum_probs=92.8
Q ss_pred cEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCccc---CcCCHHhHHHHcCceEEEEECCCCCCC
Q 006979 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR---GILNLSIQYWTSRGWAFVDVNYGGSTG 537 (623)
Q Consensus 461 ~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~---~~~~~~~~~~a~~G~~v~~~d~rGs~~ 537 (623)
.+.+.++.+ -| .+.+.+. |.. ....|+.|.+|.-|..... ......+..|.++||+++.+||||-|+
T Consensus 4 ~~~v~i~Gp-~G-~le~~~~-~~~-------~~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~ 73 (210)
T COG2945 4 MPTVIINGP-AG-RLEGRYE-PAK-------TPAAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGR 73 (210)
T ss_pred CCcEEecCC-cc-cceeccC-CCC-------CCCCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeeccccccc
Confidence 345666664 33 4664433 332 4567899999977643221 122345777899999999999999888
Q ss_pred CchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979 538 YGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP 610 (623)
Q Consensus 538 ~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~ 610 (623)
+..+|. .|..+.+|+.++++|+.++.. +..-..+.|+|+|+++++.++ +.++ ....++..|..+.
T Consensus 74 S~G~fD------~GiGE~~Da~aaldW~~~~hp-~s~~~~l~GfSFGa~Ia~~la~r~~e-~~~~is~~p~~~~ 139 (210)
T COG2945 74 SQGEFD------NGIGELEDAAAALDWLQARHP-DSASCWLAGFSFGAYIAMQLAMRRPE-ILVFISILPPINA 139 (210)
T ss_pred ccCccc------CCcchHHHHHHHHHHHHhhCC-CchhhhhcccchHHHHHHHHHHhccc-ccceeeccCCCCc
Confidence 877665 488899999999999998732 222347899999999999999 5554 3455666776663
No 68
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.14 E-value=6.3e-10 Score=111.88 Aligned_cols=131 Identities=12% Similarity=0.072 Sum_probs=93.6
Q ss_pred EEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC--cCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG--ILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (623)
Q Consensus 462 ~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~--~~~~~~~~~a~~G~~v~~~d~rGs~~~g 539 (623)
+.+.|+. +|..+.++++.|.+ .+ .|.||++|||+...... .+...+..|+++||.|+.+|+||.|.+.
T Consensus 3 ~~~~~~~--~~~~l~g~~~~p~~-------~~-~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~ 72 (274)
T TIGR03100 3 RALTFSC--EGETLVGVLHIPGA-------SH-TTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMGDSE 72 (274)
T ss_pred eeEEEEc--CCcEEEEEEEcCCC-------CC-CCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCCCCC
Confidence 3577776 57889999999965 22 35677778775432221 2335678899999999999999976543
Q ss_pred hhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCCceeEEEecccCCC
Q 006979 540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVSI 609 (623)
Q Consensus 540 ~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v~~~g~~d 609 (623)
... ..+ ....+|+.++++++.++. ...++|.++|+|+||++++.++.++..++++|..+|...
T Consensus 73 ~~~-----~~~-~~~~~d~~~~~~~l~~~~-~g~~~i~l~G~S~Gg~~a~~~a~~~~~v~~lil~~p~~~ 135 (274)
T TIGR03100 73 GEN-----LGF-EGIDADIAAAIDAFREAA-PHLRRIVAWGLCDAASAALLYAPADLRVAGLVLLNPWVR 135 (274)
T ss_pred CCC-----CCH-HHHHHHHHHHHHHHHhhC-CCCCcEEEEEECHHHHHHHHHhhhCCCccEEEEECCccC
Confidence 211 111 123589999999998752 123689999999999999988855578999999998743
No 69
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=99.14 E-value=2.4e-10 Score=117.43 Aligned_cols=126 Identities=20% Similarity=0.180 Sum_probs=96.0
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCC--HHhHHHHcCceEEEEECCCCCCCCchhHHHhhcc
Q 006979 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN--LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLG 548 (623)
Q Consensus 471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~--~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~ 548 (623)
.+..+...+|.|... ...+.|+||++|||.+........ ......+..|+.|+.+|||-..++
T Consensus 60 ~~~~~~~~~y~p~~~-----~~~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~---------- 124 (312)
T COG0657 60 SGDGVPVRVYRPDRK-----AAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEH---------- 124 (312)
T ss_pred CCCceeEEEECCCCC-----CCCCCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCC----------
Confidence 455577889998211 155789999999997655544333 456666779999999999965433
Q ss_pred CCccchHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHh-c-CC---CceeEEEecccCCCHHH
Q 006979 549 RWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAAL-A-FR---DTFKAGASLYGVSIPVI 612 (623)
Q Consensus 549 ~~g~~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~-~-~~---~~f~a~v~~~g~~d~~~ 612 (623)
.-...++|+.++++|+.++. -+|++||+|+|+|+||++++.++ . .. ...++.+.++|..|+..
T Consensus 125 -~~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~ 195 (312)
T COG0657 125 -PFPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTS 195 (312)
T ss_pred -CCCchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcc
Confidence 12345899999999999874 48999999999999999999888 2 22 25789999999998765
No 70
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=99.13 E-value=7.3e-10 Score=125.33 Aligned_cols=95 Identities=17% Similarity=0.089 Sum_probs=81.0
Q ss_pred HHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHh---------------CCCCCCCceEEE
Q 006979 515 LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVG---------------SGKADEKRLCIT 579 (623)
Q Consensus 515 ~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~---------------~~~~d~~rv~i~ 579 (623)
...++|+.+||+|+.+|.||.++++..+. .++..+.+|+.++|+||.. ++|. ..|||++
T Consensus 270 ~~~~~~~~rGYaVV~~D~RGtg~SeG~~~-----~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~Ws-nGkVGm~ 343 (767)
T PRK05371 270 SLNDYFLPRGFAVVYVSGIGTRGSDGCPT-----TGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWS-NGKVAMT 343 (767)
T ss_pred hHHHHHHhCCeEEEEEcCCCCCCCCCcCc-----cCCHHHHHHHHHHHHHHhhCCccccccccccccccCCC-CCeeEEE
Confidence 46789999999999999999988777542 2456789999999999984 4555 4799999
Q ss_pred EcChHHHHHHHHh-cCCCceeEEEecccCCCHHHhhh
Q 006979 580 GGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVIISE 615 (623)
Q Consensus 580 G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~~~ 615 (623)
|.||||+++++++ +.++.++|+|+.+|++|+..++.
T Consensus 344 G~SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr 380 (767)
T PRK05371 344 GKSYLGTLPNAVATTGVEGLETIIPEAAISSWYDYYR 380 (767)
T ss_pred EEcHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhh
Confidence 9999999999888 67889999999999999977653
No 71
>COG4099 Predicted peptidase [General function prediction only]
Probab=99.13 E-value=2.9e-10 Score=108.38 Aligned_cols=134 Identities=22% Similarity=0.320 Sum_probs=90.9
Q ss_pred EEeecCCCCeEEEEEEEcCCCCCCCCCCCCCC-CEEEEecCCCCCcccCcCC----HHhHHHH--cCceEEEEECCCCCC
Q 006979 464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKP-PLLVKSHGGPTSEARGILN----LSIQYWT--SRGWAFVDVNYGGST 536 (623)
Q Consensus 464 i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~-Pliv~~hGg~~~~~~~~~~----~~~~~~a--~~G~~v~~~d~rGs~ 536 (623)
++|.....|.++...+|.|++ |.+ ++++ |++|++||+.......... .-+-.|+ +-++-|++|.|--
T Consensus 163 ~~f~d~~tgneLkYrly~Pkd--y~p--dkky~PLvlfLHgagq~g~dn~~~l~sg~gaiawa~pedqcfVlAPQy~~-- 236 (387)
T COG4099 163 VEFYDESTGNELKYRLYTPKD--YAP--DKKYYPLVLFLHGAGQGGSDNDKVLSSGIGAIAWAGPEDQCFVLAPQYNP-- 236 (387)
T ss_pred eEeeccccCceeeEEEecccc--cCC--CCccccEEEEEecCCCCCchhhhhhhcCccceeeecccCceEEEcccccc--
Confidence 334333257889999999988 665 7776 9999999995444332111 1111222 3457778777431
Q ss_pred CCchhHHHhhccCCccchHHHHHHHHH-HHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979 537 GYGREFRERLLGRWGIVDVNDCCSCAT-FLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI 609 (623)
Q Consensus 537 ~~g~~~~~~~~~~~g~~~~~D~~~~~~-~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d 609 (623)
-|.+ ..+--.......+.+++ -|.++..||.+||.++|.|+||+.+.+++ .+|+.|+|++.++|=-|
T Consensus 237 ----if~d--~e~~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d 305 (387)
T COG4099 237 ----IFAD--SEEKTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGD 305 (387)
T ss_pred ----cccc--cccccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCc
Confidence 1111 11111112334555555 78889999999999999999999999999 89999999999999887
No 72
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.10 E-value=6.1e-10 Score=107.64 Aligned_cols=135 Identities=15% Similarity=0.104 Sum_probs=101.5
Q ss_pred EEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhH
Q 006979 463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREF 542 (623)
Q Consensus 463 ~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~ 542 (623)
.-.+.+. .|..+....+.|.+. .++.-+|+++||.. ......|...+..|+..||.|+..|++|.|.+..-
T Consensus 29 ~~~~~n~-rG~~lft~~W~p~~~------~~pr~lv~~~HG~g-~~~s~~~~~~a~~l~~~g~~v~a~D~~GhG~SdGl- 99 (313)
T KOG1455|consen 29 ESFFTNP-RGAKLFTQSWLPLSG------TEPRGLVFLCHGYG-EHSSWRYQSTAKRLAKSGFAVYAIDYEGHGRSDGL- 99 (313)
T ss_pred eeeEEcC-CCCEeEEEecccCCC------CCCceEEEEEcCCc-ccchhhHHHHHHHHHhCCCeEEEeeccCCCcCCCC-
Confidence 3344555 799999999999761 36678999999982 33335677789999999999999999997654321
Q ss_pred HHhhccCCc--cchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979 543 RERLLGRWG--IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP 610 (623)
Q Consensus 543 ~~~~~~~~g--~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~ 610 (623)
..... ..-++|+.+-++.+..+..--.-..+++|+||||.++|.++ ++|+.+.++|..+|.+-+
T Consensus 100 ----~~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i 166 (313)
T KOG1455|consen 100 ----HAYVPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKI 166 (313)
T ss_pred ----cccCCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeeccccc
Confidence 11111 12367888888877776544445789999999999999999 799999999999997644
No 73
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.09 E-value=3.3e-10 Score=104.10 Aligned_cols=103 Identities=17% Similarity=0.194 Sum_probs=86.5
Q ss_pred CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575 (623)
Q Consensus 496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r 575 (623)
-.||++||.. +..........++.++||.|.+|+|+|.|--.+.+.+....+| .+|+.++.++|.++++ +.
T Consensus 16 ~AVLllHGFT--Gt~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW----~~~v~d~Y~~L~~~gy---~e 86 (243)
T COG1647 16 RAVLLLHGFT--GTPRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDW----WEDVEDGYRDLKEAGY---DE 86 (243)
T ss_pred EEEEEEeccC--CCcHHHHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHH----HHHHHHHHHHHHHcCC---Ce
Confidence 5789999983 3444677889999999999999999998888888887766667 7999999999999875 69
Q ss_pred eEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979 576 LCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI 609 (623)
Q Consensus 576 v~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d 609 (623)
|+|.|.||||-+++.++ ++| .+++|..++..+
T Consensus 87 I~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~ 119 (243)
T COG1647 87 IAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVN 119 (243)
T ss_pred EEEEeecchhHHHHHHHhhCC--ccceeeecCCcc
Confidence 99999999999999999 666 577776666544
No 74
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.09 E-value=1.9e-07 Score=94.64 Aligned_cols=236 Identities=8% Similarity=0.023 Sum_probs=128.2
Q ss_pred EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (623)
Q Consensus 156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~ 235 (623)
.+++....++.|+++|+.++ .....+... .....+.|+|+|+.+++..... ..|+++|+.+++.
T Consensus 44 ~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~-----~~~~~~~~~~~g~~l~~~~~~~--------~~l~~~d~~~~~~-- 107 (300)
T TIGR03866 44 LLYVCASDSDTIQVIDLATG-EVIGTLPSG-----PDPELFALHPNGKILYIANEDD--------NLVTVIDIETRKV-- 107 (300)
T ss_pred EEEEEECCCCeEEEEECCCC-cEEEeccCC-----CCccEEEECCCCCEEEEEcCCC--------CeEEEEECCCCeE--
Confidence 45566666778999999876 222334332 1123467999999876654322 5699999987641
Q ss_pred ceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEE
Q 006979 236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF 315 (623)
Q Consensus 236 ~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~ 315 (623)
+..+..+. ......|+|||+.+++...+ ...++.+|..++.. ......+ .......|++||+.+
T Consensus 108 ~~~~~~~~-~~~~~~~~~dg~~l~~~~~~-------~~~~~~~d~~~~~~--~~~~~~~------~~~~~~~~s~dg~~l 171 (300)
T TIGR03866 108 LAEIPVGV-EPEGMAVSPDGKIVVNTSET-------TNMAHFIDTKTYEI--VDNVLVD------QRPRFAEFTADGKEL 171 (300)
T ss_pred EeEeeCCC-CcceEEECCCCCEEEEEecC-------CCeEEEEeCCCCeE--EEEEEcC------CCccEEEECCCCCEE
Confidence 22232222 23457899999988876532 22356667665421 1111111 233467899999944
Q ss_pred EEEeCCCCeeeEEEEecCCCeE-EEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCcee
Q 006979 316 FVTDRKNGFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 394 (623)
Q Consensus 316 ~~~~~~~g~~~L~~~d~~~~~~-~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~ 394 (623)
+++....+ .++.+|+.+++. +.+........ +.. .....+.+. ++++.+++....+ .++.++|..+++..
T Consensus 172 ~~~~~~~~--~v~i~d~~~~~~~~~~~~~~~~~~-~~~-~~~~~i~~s---~dg~~~~~~~~~~--~~i~v~d~~~~~~~ 242 (300)
T TIGR03866 172 WVSSEIGG--TVSVIDVATRKVIKKITFEIPGVH-PEA-VQPVGIKLT---KDGKTAFVALGPA--NRVAVVDAKTYEVL 242 (300)
T ss_pred EEEcCCCC--EEEEEEcCcceeeeeeeecccccc-ccc-CCccceEEC---CCCCEEEEEcCCC--CeEEEEECCCCcEE
Confidence 44332123 577788877754 33321100000 000 000122232 3777766654323 35778898877664
Q ss_pred e-cccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979 395 L-LDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (623)
Q Consensus 395 ~-lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~ 436 (623)
. +..+. .+..+ +++++.++.... ....|.++|+++++.
T Consensus 243 ~~~~~~~-~~~~~~~~~~g~~l~~~~~---~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 243 DYLLVGQ-RVWQLAFTPDEKYLLTTNG---VSNDVSVIDVAALKV 283 (300)
T ss_pred EEEEeCC-CcceEEECCCCCEEEEEcC---CCCeEEEEECCCCcE
Confidence 3 32222 23233 667776654432 234688999888763
No 75
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.07 E-value=2.4e-07 Score=93.91 Aligned_cols=229 Identities=14% Similarity=0.075 Sum_probs=128.5
Q ss_pred EEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 006979 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP 236 (623)
Q Consensus 157 l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~ 236 (623)
++++...++.|+++|+.++ .....+... .......|+|||+.++.+.... ..|+++|+.+++. .
T Consensus 3 ~~~s~~~d~~v~~~d~~t~-~~~~~~~~~-----~~~~~l~~~~dg~~l~~~~~~~--------~~v~~~d~~~~~~--~ 66 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATL-EVTRTFPVG-----QRPRGITLSKDGKLLYVCASDS--------DTIQVIDLATGEV--I 66 (300)
T ss_pred EEEEecCCCEEEEEECCCC-ceEEEEECC-----CCCCceEECCCCCEEEEEECCC--------CeEEEEECCCCcE--E
Confidence 5666667888999999876 222333321 2234578999999776554322 5689999988762 2
Q ss_pred eecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEE
Q 006979 237 KVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF 316 (623)
Q Consensus 237 ~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~ 316 (623)
..+..+.+ .....|+|||+.|+....+ ...|+++|+.+.. ....+.. . ..+..+.|+|||++++
T Consensus 67 ~~~~~~~~-~~~~~~~~~g~~l~~~~~~-------~~~l~~~d~~~~~---~~~~~~~-~----~~~~~~~~~~dg~~l~ 130 (300)
T TIGR03866 67 GTLPSGPD-PELFALHPNGKILYIANED-------DNLVTVIDIETRK---VLAEIPV-G----VEPEGMAVSPDGKIVV 130 (300)
T ss_pred EeccCCCC-ccEEEECCCCCEEEEEcCC-------CCeEEEEECCCCe---EEeEeeC-C----CCcceEEECCCCCEEE
Confidence 33433332 2456799999977655322 2358999987652 1222221 1 2345789999999555
Q ss_pred EEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCce-ee
Q 006979 317 VTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SL 395 (623)
Q Consensus 317 ~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~-~~ 395 (623)
.... .+ ..++.+|..+++............ ...+. ++++.++++...++ .++++|+++++. +.
T Consensus 131 ~~~~-~~-~~~~~~d~~~~~~~~~~~~~~~~~---------~~~~s---~dg~~l~~~~~~~~--~v~i~d~~~~~~~~~ 194 (300)
T TIGR03866 131 NTSE-TT-NMAHFIDTKTYEIVDNVLVDQRPR---------FAEFT---ADGKELWVSSEIGG--TVSVIDVATRKVIKK 194 (300)
T ss_pred EEec-CC-CeEEEEeCCCCeEEEEEEcCCCcc---------EEEEC---CCCCEEEEEcCCCC--EEEEEEcCcceeeee
Confidence 5443 22 235556776665432222111111 12222 27777777654454 466778877654 33
Q ss_pred cccCC-----cce--Ee--eeecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979 396 LDIPF-----TDI--DN--ITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (623)
Q Consensus 396 lt~~~-----~~v--~~--~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~ 436 (623)
++... ... .. ++++++.+++...+. ..+.++++++++.
T Consensus 195 ~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~---~~i~v~d~~~~~~ 241 (300)
T TIGR03866 195 ITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA---NRVAVVDAKTYEV 241 (300)
T ss_pred eeecccccccccCCccceEECCCCCEEEEEcCCC---CeEEEEECCCCcE
Confidence 43211 011 11 266677665543322 3588888877654
No 76
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.07 E-value=1.5e-06 Score=85.71 Aligned_cols=247 Identities=15% Similarity=0.140 Sum_probs=144.5
Q ss_pred CCcEEEEeCCCCCCCc--eecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceeccc
Q 006979 164 DQRLYKHSIDSKDSSP--LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS 241 (623)
Q Consensus 164 ~~~l~~~d~~~g~~~~--~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~ 241 (623)
++.||++++++..... .++... .....-..|+|++++|+.+.++... -.-.-|.+|.++|+ .+.+..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~----~~nptyl~~~~~~~~LY~v~~~~~~----ggvaay~iD~~~G~---Lt~ln~ 83 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAE----LGNPTYLAVNPDQRHLYVVNEPGEE----GGVAAYRIDPDDGR---LTFLNR 83 (346)
T ss_pred CCceEEEEEeCcccccchhhhccc----cCCCceEEECCCCCEEEEEEecCCc----CcEEEEEEcCCCCe---EEEeec
Confidence 4568888877421111 122211 1222346799999999888775322 12456778877777 443321
Q ss_pred ---CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeee-EEE--cCCCCC-cc--ccCcCceeCCCC
Q 006979 242 ---GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR-VCV--AGFDPT-IV--ESPTEPKWSSKG 312 (623)
Q Consensus 242 ---~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~-~~~--~~~~~~-~~--~~~~~~~ws~DG 312 (623)
...-....+.++||+.|+... -+ ...|-+..+...|.+... .++ .+..+. .+ .......++|||
T Consensus 84 ~~~~g~~p~yvsvd~~g~~vf~An-Y~------~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~ 156 (346)
T COG2706 84 QTLPGSPPCYVSVDEDGRFVFVAN-YH------SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG 156 (346)
T ss_pred cccCCCCCeEEEECCCCCEEEEEE-cc------CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC
Confidence 112224567999999776554 22 345888888765543222 111 222111 00 113456789999
Q ss_pred cEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCc
Q 006979 313 ELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 392 (623)
Q Consensus 313 ~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~ 392 (623)
+++++.+- |.-+++.++++.|++....+-...- ..|.+.+.|.+ +++..|+..+-++.--+|.++...++
T Consensus 157 ~~l~v~DL--G~Dri~~y~~~dg~L~~~~~~~v~~-----G~GPRHi~FHp---n~k~aY~v~EL~stV~v~~y~~~~g~ 226 (346)
T COG2706 157 RYLVVPDL--GTDRIFLYDLDDGKLTPADPAEVKP-----GAGPRHIVFHP---NGKYAYLVNELNSTVDVLEYNPAVGK 226 (346)
T ss_pred CEEEEeec--CCceEEEEEcccCccccccccccCC-----CCCcceEEEcC---CCcEEEEEeccCCEEEEEEEcCCCce
Confidence 98888887 5556666666666655444322111 13567888875 88888888888899999999988787
Q ss_pred eeeccc----C--Cc---ceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcceee
Q 006979 393 LSLLDI----P--FT---DIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 439 (623)
Q Consensus 393 ~~~lt~----~--~~---~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~l 439 (623)
+++|.. + +. ....+ ++++..+|.... .-..=.+|.++..+++++.+
T Consensus 227 ~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR-g~dsI~~f~V~~~~g~L~~~ 283 (346)
T COG2706 227 FEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR-GHDSIAVFSVDPDGGKLELV 283 (346)
T ss_pred EEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC-CCCeEEEEEEcCCCCEEEEE
Confidence 776531 2 11 12233 556665554443 33345678888888875443
No 77
>PLN02511 hydrolase
Probab=99.06 E-value=2.1e-09 Score=113.42 Aligned_cols=138 Identities=14% Similarity=0.090 Sum_probs=93.5
Q ss_pred EEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchh
Q 006979 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541 (623)
Q Consensus 462 ~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~ 541 (623)
+...+... ||..+....+.+.... .....|+||++||..++.....+...+..+.++||.|+++|+||.|+....
T Consensus 72 ~re~l~~~-DG~~~~ldw~~~~~~~----~~~~~p~vvllHG~~g~s~~~y~~~~~~~~~~~g~~vv~~d~rG~G~s~~~ 146 (388)
T PLN02511 72 RRECLRTP-DGGAVALDWVSGDDRA----LPADAPVLILLPGLTGGSDDSYVRHMLLRARSKGWRVVVFNSRGCADSPVT 146 (388)
T ss_pred eEEEEECC-CCCEEEEEecCccccc----CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEecCCCCCCCCC
Confidence 44456666 7877775333321100 023358999999985543322223355666789999999999997765321
Q ss_pred HHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCc--eeEEEecccCCCH
Q 006979 542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDT--FKAGASLYGVSIP 610 (623)
Q Consensus 542 ~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~--f~a~v~~~g~~d~ 610 (623)
....+-....+|+.++++++..+. ...++.++|+|+||.+++.++ .+++. +++++++++..|+
T Consensus 147 ----~~~~~~~~~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~l 212 (388)
T PLN02511 147 ----TPQFYSASFTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFDL 212 (388)
T ss_pred ----CcCEEcCCchHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcCH
Confidence 111122345789999999998762 246899999999999999888 77776 7888888877776
No 78
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=99.06 E-value=8.3e-10 Score=111.72 Aligned_cols=129 Identities=19% Similarity=0.178 Sum_probs=98.1
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcc---cCcCCHHhHHH-HcCceEEEEECCCCCCCCchhHHHhh
Q 006979 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA---RGILNLSIQYW-TSRGWAFVDVNYGGSTGYGREFRERL 546 (623)
Q Consensus 471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~---~~~~~~~~~~~-a~~G~~v~~~d~rGs~~~g~~~~~~~ 546 (623)
....+..++|.|.... +..+.|+||++|||.+... ...+......+ .+.+.+|+.+|||=.
T Consensus 70 ~~~~l~vRly~P~~~~----~~~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLA----------- 134 (336)
T KOG1515|consen 70 PFTNLPVRLYRPTSSS----SETKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLA----------- 134 (336)
T ss_pred CCCCeEEEEEcCCCCC----cccCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccC-----------
Confidence 3456899999998732 1268999999999976544 33445555555 457999999999953
Q ss_pred ccCCccchHHHHHHHHHHHHhC----CCCCCCceEEEEcChHHHHHHHHh-c-C-----CCceeEEEecccCCCHHHhh
Q 006979 547 LGRWGIVDVNDCCSCATFLVGS----GKADEKRLCITGGSAGGYTTLAAL-A-F-----RDTFKAGASLYGVSIPVIIS 614 (623)
Q Consensus 547 ~~~~g~~~~~D~~~~~~~l~~~----~~~d~~rv~i~G~S~GG~~~~~~~-~-~-----~~~f~a~v~~~g~~d~~~~~ 614 (623)
.++.-...++|+.+|+.|+.++ ..+|++||+|+|-|+||.+|..++ + . +-.+++.|.++|+....+..
T Consensus 135 PEh~~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~~~~~ 213 (336)
T KOG1515|consen 135 PEHPFPAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQGTDRT 213 (336)
T ss_pred CCCCCCccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCCCCCC
Confidence 3333445689999999999886 348999999999999999998777 2 1 35789999999998765543
No 79
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.05 E-value=1e-09 Score=110.97 Aligned_cols=132 Identities=15% Similarity=0.091 Sum_probs=95.9
Q ss_pred EEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhH
Q 006979 463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREF 542 (623)
Q Consensus 463 ~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~ 542 (623)
+-.+.+. +|..+....+.+.. .+..+||++||. ......|...+..|+.+||.|+..|.||.|.+.+
T Consensus 11 ~~~~~~~-d~~~~~~~~~~~~~--------~~~g~Vvl~HG~--~Eh~~ry~~la~~l~~~G~~V~~~D~RGhG~S~r-- 77 (298)
T COG2267 11 EGYFTGA-DGTRLRYRTWAAPE--------PPKGVVVLVHGL--GEHSGRYEELADDLAARGFDVYALDLRGHGRSPR-- 77 (298)
T ss_pred cceeecC-CCceEEEEeecCCC--------CCCcEEEEecCc--hHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCC--
Confidence 3445555 89899888887764 122799999998 4555567778999999999999999999877654
Q ss_pred HHhhccCCcc--chHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHH
Q 006979 543 RERLLGRWGI--VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPV 611 (623)
Q Consensus 543 ~~~~~~~~g~--~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~ 611 (623)
...+.... .-..|+.+.++.+.+. .-..+++++||||||.+++..+ +++..++++|..+|...+.
T Consensus 78 --~~rg~~~~f~~~~~dl~~~~~~~~~~--~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~ 145 (298)
T COG2267 78 --GQRGHVDSFADYVDDLDAFVETIAEP--DPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLG 145 (298)
T ss_pred --CCcCCchhHHHHHHHHHHHHHHHhcc--CCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCC
Confidence 11222211 1134444444444443 1246999999999999999999 8889999999999987765
No 80
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.04 E-value=6.1e-08 Score=97.61 Aligned_cols=277 Identities=14% Similarity=0.079 Sum_probs=172.6
Q ss_pred CHHHHhccCCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEE
Q 006979 80 TADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIF 159 (623)
Q Consensus 80 t~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f 159 (623)
+.|-+.+-...+..|... ++++||+... +|-..||.-+.+ |...++-+. +++|-.....-++.+|+|
T Consensus 217 tFeK~vdl~~~vS~PmIV-~~RvYFlsD~---eG~GnlYSvdld-GkDlrrHTn--------FtdYY~R~~nsDGkrIvF 283 (668)
T COG4946 217 TFEKFVDLDGNVSSPMIV-GERVYFLSDH---EGVGNLYSVDLD-GKDLRRHTN--------FTDYYPRNANSDGKRIVF 283 (668)
T ss_pred ceeeeeecCCCcCCceEE-cceEEEEecc---cCccceEEeccC-CchhhhcCC--------chhccccccCCCCcEEEE
Confidence 344445445555566656 8999999755 366668887765 212233332 122211111112338999
Q ss_pred EeCCCCcEEEEeCCCCCCCceecCCC-C-C---------CCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 006979 160 SNYKDQRLYKHSIDSKDSSPLPITPD-Y-G---------EPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (623)
Q Consensus 160 ~~~~~~~l~~~d~~~g~~~~~~Lt~~-~-~---------~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl 228 (623)
.. .|.||++|+++. ..+.|.-+ + + .+.....+++.. +|.++++|+. ++.++++.
T Consensus 284 q~--~GdIylydP~td--~lekldI~lpl~rk~k~~k~~~pskyledfa~~-~Gd~ia~VSR----------GkaFi~~~ 348 (668)
T COG4946 284 QN--AGDIYLYDPETD--SLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVV-NGDYIALVSR----------GKAFIMRP 348 (668)
T ss_pred ec--CCcEEEeCCCcC--cceeeecCCccccccccccccCHHHhhhhhccC-CCcEEEEEec----------CcEEEECC
Confidence 84 556999999875 45554432 0 0 011112344443 6889999876 66888888
Q ss_pred CCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCcee
Q 006979 229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 308 (623)
Q Consensus 229 ~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 308 (623)
..+- ..++..... +..-+++-|++.++.-..+ +..|-++|.+++ ..++...+. +.+....-
T Consensus 349 ~~~~---~iqv~~~~~-VrY~r~~~~~e~~vigt~d-------gD~l~iyd~~~~---e~kr~e~~l-----g~I~av~v 409 (668)
T COG4946 349 WDGY---SIQVGKKGG-VRYRRIQVDPEGDVIGTND-------GDKLGIYDKDGG---EVKRIEKDL-----GNIEAVKV 409 (668)
T ss_pred CCCe---eEEcCCCCc-eEEEEEccCCcceEEeccC-------CceEEEEecCCc---eEEEeeCCc-----cceEEEEE
Confidence 7776 555654433 3344677788766544322 345888898877 234443332 45677889
Q ss_pred CCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeec-ccccccccccccCcceeEEeecCCCCEEEEEEEECC--eEEEEE
Q 006979 309 SSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG--RSYLGI 385 (623)
Q Consensus 309 s~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~-~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g--~~~L~~ 385 (623)
++||+.+.+++. ..+||.+|+++|+.+.+... ..-+....|++ +++++.+..- .| .++|-+
T Consensus 410 s~dGK~~vvaNd---r~el~vididngnv~~idkS~~~lItdf~~~~------------nsr~iAYafP-~gy~tq~Ikl 473 (668)
T COG4946 410 SPDGKKVVVAND---RFELWVIDIDNGNVRLIDKSEYGLITDFDWHP------------NSRWIAYAFP-EGYYTQSIKL 473 (668)
T ss_pred cCCCcEEEEEcC---ceEEEEEEecCCCeeEecccccceeEEEEEcC------------CceeEEEecC-cceeeeeEEE
Confidence 999995555543 56899999999999888753 33345556664 6666665543 44 467888
Q ss_pred EeCCCCceeecccCCc-ceEee-eecCCEEEEEEec
Q 006979 386 LDDFGHSLSLLDIPFT-DIDNI-TLGNDCLFVEGAS 419 (623)
Q Consensus 386 ~d~~~~~~~~lt~~~~-~v~~~-~~~~~~~~~~~~s 419 (623)
+|.+++++-.+|.+.. ++.+. +++++.+||++..
T Consensus 474 ydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~R 509 (668)
T COG4946 474 YDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSAR 509 (668)
T ss_pred EecCCCeEEEecCCcccccCcccCCCCcEEEEEecc
Confidence 9999999988888754 34443 8999999999863
No 81
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.04 E-value=1.1e-09 Score=105.81 Aligned_cols=113 Identities=21% Similarity=0.190 Sum_probs=88.1
Q ss_pred EEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHH
Q 006979 477 AYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVN 556 (623)
Q Consensus 477 ~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~ 556 (623)
..++.|+. .+.+|+||+.||.. .....|....+.+++.||+|+.+|+....+ .-...+.+
T Consensus 6 l~v~~P~~-------~g~yPVv~f~~G~~--~~~s~Ys~ll~hvAShGyIVV~~d~~~~~~-----------~~~~~~~~ 65 (259)
T PF12740_consen 6 LLVYYPSS-------AGTYPVVLFLHGFL--LINSWYSQLLEHVASHGYIVVAPDLYSIGG-----------PDDTDEVA 65 (259)
T ss_pred eEEEecCC-------CCCcCEEEEeCCcC--CCHHHHHHHHHHHHhCceEEEEecccccCC-----------CCcchhHH
Confidence 45677876 67899999999984 333346778888999999999999665222 12234678
Q ss_pred HHHHHHHHHHhC-----C---CCCCCceEEEEcChHHHHHHHHh-cC-----CCceeEEEecccCCC
Q 006979 557 DCCSCATFLVGS-----G---KADEKRLCITGGSAGGYTTLAAL-AF-----RDTFKAGASLYGVSI 609 (623)
Q Consensus 557 D~~~~~~~l~~~-----~---~~d~~rv~i~G~S~GG~~~~~~~-~~-----~~~f~a~v~~~g~~d 609 (623)
+..+.++|+.+. + .+|-+||+|+|||.||-++..++ .+ +..|++++.+.|+.-
T Consensus 66 ~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG 132 (259)
T PF12740_consen 66 SAAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDG 132 (259)
T ss_pred HHHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccc
Confidence 888999998762 1 25889999999999999999887 55 458999999999874
No 82
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.02 E-value=1.3e-07 Score=98.54 Aligned_cols=276 Identities=10% Similarity=0.094 Sum_probs=148.2
Q ss_pred cCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCC--ceEEEeCC--EEEEEe
Q 006979 87 ASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGG--GAFRIFGD--TVIFSN 161 (623)
Q Consensus 87 ~~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~--~~~~~s~d--~l~f~~ 161 (623)
....+..+.++| ++.||-+.....+.|....++.+.++| +... + .++...|. ...+++++ .++..+
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g-~L~~-~-------~~~~~~g~~p~~i~~~~~g~~l~van 105 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG-TLTL-L-------NSVPSGGSSPCHIAVDPDGRFLYVAN 105 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT-EEEE-E-------EEEEESSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc-eeEE-e-------eeeccCCCCcEEEEEecCCCEEEEEE
Confidence 455677888888 777777764432356666666654422 1111 1 11111222 23445444 677777
Q ss_pred CCCCcEEEEeCCCCCCCceec---C-C---CCC---CCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 006979 162 YKDQRLYKHSIDSKDSSPLPI---T-P---DYG---EPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ 231 (623)
Q Consensus 162 ~~~~~l~~~d~~~g~~~~~~L---t-~---~~~---~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g 231 (623)
..++.+.+++++.. ...... . . +.. ....+.-...++|||++++.... .. ..|++++++..
T Consensus 106 y~~g~v~v~~l~~~-g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl-G~-------D~v~~~~~~~~ 176 (345)
T PF10282_consen 106 YGGGSVSVFPLDDD-GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL-GA-------DRVYVYDIDDD 176 (345)
T ss_dssp TTTTEEEEEEECTT-SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET-TT-------TEEEEEEE-TT
T ss_pred ccCCeEEEEEccCC-cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec-CC-------CEEEEEEEeCC
Confidence 78888888887642 122211 1 0 000 00112224679999998865432 21 45777776554
Q ss_pred C--cccceec--ccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecC-CCceeeeEEEcCCCCCcc--ccCc
Q 006979 232 N--IQEPKVL--VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYKRVCVAGFDPTIV--ESPT 304 (623)
Q Consensus 232 ~--~~~~~~l--~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~-~~~~~~~~~~~~~~~~~~--~~~~ 304 (623)
. +.....+ ..+.. .....|+|||+++|.+. .. ...|.+++++. .+.+.....+.-.+..+. ....
T Consensus 177 ~~~l~~~~~~~~~~G~G-PRh~~f~pdg~~~Yv~~-e~------s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 248 (345)
T PF10282_consen 177 TGKLTPVDSIKVPPGSG-PRHLAFSPDGKYAYVVN-EL------SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPA 248 (345)
T ss_dssp S-TEEEEEEEECSTTSS-EEEEEE-TTSSEEEEEE-TT------TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEE
T ss_pred CceEEEeeccccccCCC-CcEEEEcCCcCEEEEec-CC------CCcEEEEeecccCCceeEEEEeeeccccccccCCce
Confidence 3 2111111 21211 22345999999877664 32 34588888873 333222222222110111 1356
Q ss_pred CceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEE
Q 006979 305 EPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 384 (623)
Q Consensus 305 ~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~ 384 (623)
....+|||+.+|++++..+.-.++.+|..+++++.+...... +. ..+.+.+. ++++.|+++...++.-.+|
T Consensus 249 ~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~-G~-----~Pr~~~~s---~~g~~l~Va~~~s~~v~vf 319 (345)
T PF10282_consen 249 EIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG-GK-----FPRHFAFS---PDGRYLYVANQDSNTVSVF 319 (345)
T ss_dssp EEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES-SS-----SEEEEEE----TTSSEEEEEETTTTEEEEE
T ss_pred eEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC-CC-----CccEEEEe---CCCCEEEEEecCCCeEEEE
Confidence 778999999888888855555666776677777665422111 11 11344554 4888888888788888999
Q ss_pred EEeCCCCceeecc
Q 006979 385 ILDDFGHSLSLLD 397 (623)
Q Consensus 385 ~~d~~~~~~~~lt 397 (623)
.+|.++|.++.+.
T Consensus 320 ~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 320 DIDPDTGKLTPVG 332 (345)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEeCCCCcEEEec
Confidence 9999999887654
No 83
>PRK13616 lipoprotein LpqB; Provisional
Probab=99.02 E-value=4.8e-08 Score=107.23 Aligned_cols=171 Identities=8% Similarity=0.000 Sum_probs=106.9
Q ss_pred eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCC---
Q 006979 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM--- 268 (623)
Q Consensus 192 ~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~--- 268 (623)
...++.+||||++++|+....... ......||+++.. +. .++++.+.. ...|+|||||++|+|+....+-.
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~-~d~~s~Lwv~~~g-g~---~~~lt~g~~-~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGA-PDPASSLWVGPLG-GV---AVQVLEGHS-LTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCC-CCcceEEEEEeCC-Cc---ceeeecCCC-CCCceECCCCCceEEEecCcceEEEe
Confidence 456789999999999998532211 1245789999974 44 466766654 67899999999999886221100
Q ss_pred -CCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEE---EecCCCeEEEE---
Q 006979 269 -PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHK---WIESNNEVLAI--- 340 (623)
Q Consensus 269 -p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~---~d~~~~~~~~l--- 340 (623)
.....+||+.+++++. ... ..+ ..+..++|||||+ ++|+.. + +|+. ...++|+ ..|
T Consensus 425 ~~~~~gql~~~~vd~ge---~~~---~~~----g~Issl~wSpDG~RiA~i~~---g--~v~Va~Vvr~~~G~-~~l~~~ 488 (591)
T PRK13616 425 RDPATGQLARTPVDASA---VAS---RVP----GPISELQLSRDGVRAAMIIG---G--KVYLAVVEQTEDGQ-YALTNP 488 (591)
T ss_pred ccCCCceEEEEeccCch---hhh---ccC----CCcCeEEECCCCCEEEEEEC---C--EEEEEEEEeCCCCc-eeeccc
Confidence 0124567777776552 111 222 4578999999999 888773 3 4554 4444554 333
Q ss_pred ---eecccc-cccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeeccc
Q 006979 341 ---YSLDAE-FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI 398 (623)
Q Consensus 341 ---~~~~~~-~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~ 398 (623)
.....+ .....|. ++..|++.. .++...+|++++++...+.+..
T Consensus 489 ~~l~~~l~~~~~~l~W~-------------~~~~L~V~~-~~~~~~v~~v~vDG~~~~~~~~ 536 (591)
T PRK13616 489 REVGPGLGDTAVSLDWR-------------TGDSLVVGR-SDPEHPVWYVNLDGSNSDALPS 536 (591)
T ss_pred EEeecccCCccccceEe-------------cCCEEEEEe-cCCCCceEEEecCCccccccCC
Confidence 332222 2344555 455566554 4566779999998766555333
No 84
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=99.02 E-value=3.3e-10 Score=109.30 Aligned_cols=102 Identities=20% Similarity=0.138 Sum_probs=75.2
Q ss_pred EEEecCCCCCcccCcC-CHHhHHHHc-CceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhC---CCCC
Q 006979 498 LVKSHGGPTSEARGIL-NLSIQYWTS-RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS---GKAD 572 (623)
Q Consensus 498 iv~~hGg~~~~~~~~~-~~~~~~~a~-~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~---~~~d 572 (623)
||++|||.+....... ......+++ +|++|+.+|||=... ......++|+.++++|+.++ -.+|
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~-----------~~~p~~~~D~~~a~~~l~~~~~~~~~d 69 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPE-----------APFPAALEDVKAAYRWLLKNADKLGID 69 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTT-----------SSTTHHHHHHHHHHHHHHHTHHHHTEE
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeecccccc-----------ccccccccccccceeeecccccccccc
Confidence 7899999765444332 345666665 999999999995332 22235689999999999987 2488
Q ss_pred CCceEEEEcChHHHHHHHHh-cC--C--CceeEEEecccCCCH
Q 006979 573 EKRLCITGGSAGGYTTLAAL-AF--R--DTFKAGASLYGVSIP 610 (623)
Q Consensus 573 ~~rv~i~G~S~GG~~~~~~~-~~--~--~~f~a~v~~~g~~d~ 610 (623)
++||+|+|.|+||++++.++ .. . ..+++++..+|+.|+
T Consensus 70 ~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~ 112 (211)
T PF07859_consen 70 PERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDL 112 (211)
T ss_dssp EEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSST
T ss_pred ccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccc
Confidence 99999999999999999888 32 2 258999999999988
No 85
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.00 E-value=1.4e-09 Score=98.01 Aligned_cols=96 Identities=19% Similarity=0.157 Sum_probs=73.7
Q ss_pred EEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCce
Q 006979 497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL 576 (623)
Q Consensus 497 liv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv 576 (623)
+||++||... ....+...++.|+++||.|+.+|+|+.+.... ..++..+++++.+.. .|+++|
T Consensus 1 ~vv~~HG~~~--~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~-~~~~~i 63 (145)
T PF12695_consen 1 VVVLLHGWGG--SRRDYQPLAEALAEQGYAVVAFDYPGHGDSDG--------------ADAVERVLADIRAGY-PDPDRI 63 (145)
T ss_dssp EEEEECTTTT--TTHHHHHHHHHHHHTTEEEEEESCTTSTTSHH--------------SHHHHHHHHHHHHHH-CTCCEE
T ss_pred CEEEECCCCC--CHHHHHHHHHHHHHCCCEEEEEecCCCCccch--------------hHHHHHHHHHHHhhc-CCCCcE
Confidence 5899999944 34456788999999999999999998665411 125555555553321 288999
Q ss_pred EEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979 577 CITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP 610 (623)
Q Consensus 577 ~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~ 610 (623)
+++|+|+||.+++.++ .+ ..++++|.+.|..+.
T Consensus 64 ~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~~~~ 97 (145)
T PF12695_consen 64 ILIGHSMGGAIAANLAARN-PRVKAVVLLSPYPDS 97 (145)
T ss_dssp EEEEETHHHHHHHHHHHHS-TTESEEEEESESSGC
T ss_pred EEEEEccCcHHHHHHhhhc-cceeEEEEecCccch
Confidence 9999999999999999 56 789999999996553
No 86
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=98.96 E-value=1.8e-09 Score=98.33 Aligned_cols=134 Identities=18% Similarity=0.135 Sum_probs=102.7
Q ss_pred CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (623)
Q Consensus 460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g 539 (623)
.-+.+++.++ |..++++|+.... ...|+++++|+..+ ..........-++...+..|+.++|||-|.+.
T Consensus 53 pye~i~l~T~-D~vtL~a~~~~~E---------~S~pTlLyfh~NAG-NmGhr~~i~~~fy~~l~mnv~ivsYRGYG~S~ 121 (300)
T KOG4391|consen 53 PYERIELRTR-DKVTLDAYLMLSE---------SSRPTLLYFHANAG-NMGHRLPIARVFYVNLKMNVLIVSYRGYGKSE 121 (300)
T ss_pred CceEEEEEcC-cceeEeeeeeccc---------CCCceEEEEccCCC-cccchhhHHHHHHHHcCceEEEEEeeccccCC
Confidence 4578899998 9999999998732 35799999998732 22223333445567889999999999955432
Q ss_pred hhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHH
Q 006979 540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPV 611 (623)
Q Consensus 540 ~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~ 611 (623)
.+-.+ . | -.-|..++++||..++..|..+|.++|.|.||..++.++ .+.++..|+|...-+..+.
T Consensus 122 GspsE---~--G--L~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp 187 (300)
T KOG4391|consen 122 GSPSE---E--G--LKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIP 187 (300)
T ss_pred CCccc---c--c--eeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccch
Confidence 22111 1 1 246899999999999999999999999999999999988 7788999999887776663
No 87
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.94 E-value=8.3e-07 Score=91.96 Aligned_cols=257 Identities=13% Similarity=0.084 Sum_probs=130.2
Q ss_pred EEEeCC--EEEEEeCCCCcEEEEeCC-CCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 006979 150 FRIFGD--TVIFSNYKDQRLYKHSID-SKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (623)
Q Consensus 150 ~~~s~d--~l~f~~~~~~~l~~~d~~-~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i 226 (623)
.+++++ .++.....++.|..++++ .+ ..+.+.... . ........++|+|++++...... +.|.++
T Consensus 40 l~~spd~~~lyv~~~~~~~i~~~~~~~~g--~l~~~~~~~-~-~~~p~~i~~~~~g~~l~v~~~~~--------~~v~v~ 107 (330)
T PRK11028 40 MVISPDKRHLYVGVRPEFRVLSYRIADDG--ALTFAAESP-L-PGSPTHISTDHQGRFLFSASYNA--------NCVSVS 107 (330)
T ss_pred EEECCCCCEEEEEECCCCcEEEEEECCCC--ceEEeeeec-C-CCCceEEEECCCCCEEEEEEcCC--------CeEEEE
Confidence 444444 566665666778777765 23 222222110 0 11223577999999887765432 567788
Q ss_pred EcCC-CCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceee---eEEEcCCCCCcccc
Q 006979 227 ALNG-QNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK---RVCVAGFDPTIVES 302 (623)
Q Consensus 227 dl~~-g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~---~~~~~~~~~~~~~~ 302 (623)
+++. +..........+........++|||++|+..... ...|+++|++..+.+.. ........ ..
T Consensus 108 ~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~-------~~~v~v~d~~~~g~l~~~~~~~~~~~~g----~~ 176 (330)
T PRK11028 108 PLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK-------EDRIRLFTLSDDGHLVAQEPAEVTTVEG----AG 176 (330)
T ss_pred EECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC-------CCEEEEEEECCCCcccccCCCceecCCC----CC
Confidence 7763 3211111111121122334699999988765422 34589999976443211 00011111 34
Q ss_pred CcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeec---ccccccccccccCcceeEEeecCCCCEEEEEEEECC
Q 006979 303 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL---DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG 379 (623)
Q Consensus 303 ~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~---~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g 379 (623)
+....|+|||+.+|+.+...+.-.+|.++..+++.+.+..- ......+.|. ..+.+. |+++.+|...+..+
T Consensus 177 p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~---~~i~~~---pdg~~lyv~~~~~~ 250 (330)
T PRK11028 177 PRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWA---ADIHIT---PDGRHLYACDRTAS 250 (330)
T ss_pred CceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccc---eeEEEC---CCCCEEEEecCCCC
Confidence 55789999999776776534554555555434554433211 1111222332 123343 37777777644455
Q ss_pred eEEEEEEeCCCCceeecc---cCCc-ceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979 380 RSYLGILDDFGHSLSLLD---IPFT-DIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (623)
Q Consensus 380 ~~~L~~~d~~~~~~~~lt---~~~~-~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~ 436 (623)
.-.++.++.+++..+.+. .+.. .--.++++++++|+.... ...-.+|.++.+++.+
T Consensus 251 ~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~-~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 251 LISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQK-SHHISVYEIDGETGLL 310 (330)
T ss_pred eEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEcc-CCcEEEEEEcCCCCcE
Confidence 556666665554443222 1111 111337777777776532 2333466666555654
No 88
>PRK00870 haloalkane dehalogenase; Provisional
Probab=98.93 E-value=1.6e-08 Score=103.38 Aligned_cols=128 Identities=13% Similarity=0.091 Sum_probs=83.3
Q ss_pred CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (623)
Q Consensus 460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g 539 (623)
....+++... +|..+... |...+ ....|.||++||.+. ....|...+..|.++||.|+++|.||.|...
T Consensus 20 ~~~~~~~~~~-~~~~~~i~-y~~~G-------~~~~~~lvliHG~~~--~~~~w~~~~~~L~~~gy~vi~~Dl~G~G~S~ 88 (302)
T PRK00870 20 APHYVDVDDG-DGGPLRMH-YVDEG-------PADGPPVLLLHGEPS--WSYLYRKMIPILAAAGHRVIAPDLIGFGRSD 88 (302)
T ss_pred CceeEeecCC-CCceEEEE-EEecC-------CCCCCEEEEECCCCC--chhhHHHHHHHHHhCCCEEEEECCCCCCCCC
Confidence 4556777664 55544422 32322 112367899999843 3345667788888889999999999966542
Q ss_pred hhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEeccc
Q 006979 540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYG 606 (623)
Q Consensus 540 ~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g 606 (623)
.. .. ......++..+.+..++++ .+.+++.++|||+||.+++.++ .+|+.++++|...+
T Consensus 89 ~~-----~~-~~~~~~~~~a~~l~~~l~~--l~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 148 (302)
T PRK00870 89 KP-----TR-REDYTYARHVEWMRSWFEQ--LDLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANT 148 (302)
T ss_pred CC-----CC-cccCCHHHHHHHHHHHHHH--cCCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCC
Confidence 21 00 0112234444444433333 2346899999999999999999 88999999998865
No 89
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.93 E-value=7.9e-09 Score=98.09 Aligned_cols=136 Identities=18% Similarity=0.189 Sum_probs=100.3
Q ss_pred CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHc-CceEEEEECCCCCCCC
Q 006979 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGSTGY 538 (623)
Q Consensus 460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~-~G~~v~~~d~rGs~~~ 538 (623)
..+.+..++. .|..+.+.++.|.. ...++|++.||. +............+.. ..+.|+.+||+|.|..
T Consensus 34 ~v~v~~~~t~-rgn~~~~~y~~~~~--------~~~~~lly~hGN--a~Dlgq~~~~~~~l~~~ln~nv~~~DYSGyG~S 102 (258)
T KOG1552|consen 34 FVEVFKVKTS-RGNEIVCMYVRPPE--------AAHPTLLYSHGN--AADLGQMVELFKELSIFLNCNVVSYDYSGYGRS 102 (258)
T ss_pred ccceEEeecC-CCCEEEEEEEcCcc--------ccceEEEEcCCc--ccchHHHHHHHHHHhhcccceEEEEeccccccc
Confidence 3344555555 67778888887753 346899999997 3332222222222333 4899999999998776
Q ss_pred chhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHHhhhh
Q 006979 539 GREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVIISEE 616 (623)
Q Consensus 539 g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~~~~ 616 (623)
+....+. ...+|+.++.+||.+... .+++|+++|+|+|...++.++ +.| .+|+|..+|+.+..+.+-.
T Consensus 103 ~G~psE~-------n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~~rv~~~ 171 (258)
T KOG1552|consen 103 SGKPSER-------NLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSGMRVAFP 171 (258)
T ss_pred CCCcccc-------cchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhhhhhhcc
Confidence 5544331 458999999999999865 679999999999999999999 666 8999999999998876543
No 90
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=98.92 E-value=4.4e-09 Score=105.20 Aligned_cols=131 Identities=19% Similarity=0.118 Sum_probs=91.7
Q ss_pred EEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchh
Q 006979 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541 (623)
Q Consensus 462 ~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~ 541 (623)
..+++.....+.++..+++.|....... ...+.|+||+.||. +.....|.+.++.+++.||+|..+++.|+..-+..
T Consensus 39 ~~i~~~~~~r~~~~~v~~~~p~~~~~~~-~~~~~PlvvlshG~--Gs~~~~f~~~A~~lAs~Gf~Va~~~hpgs~~~~~~ 115 (365)
T COG4188 39 VTITLNDPQRDRERPVDLRLPQGGTGTV-ALYLLPLVVLSHGS--GSYVTGFAWLAEHLASYGFVVAAPDHPGSNAGGAP 115 (365)
T ss_pred EEEeccCcccCCccccceeccCCCcccc-ccCcCCeEEecCCC--CCCccchhhhHHHHhhCceEEEeccCCCcccccCC
Confidence 3455554423667888889887622000 01489999999998 55577888999999999999999999996532221
Q ss_pred HHHhhccCC----ccchHHHHHHHHHHHHhC---C----CCCCCceEEEEcChHHHHHHHHh-cCC
Q 006979 542 FRERLLGRW----GIVDVNDCCSCATFLVGS---G----KADEKRLCITGGSAGGYTTLAAL-AFR 595 (623)
Q Consensus 542 ~~~~~~~~~----g~~~~~D~~~~~~~l~~~---~----~~d~~rv~i~G~S~GG~~~~~~~-~~~ 595 (623)
-.......+ ......|+...+++|.+. + .+|+.||+++|||+|||++|.++ .+.
T Consensus 116 ~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~ 181 (365)
T COG4188 116 AAYAGPGSYAPAEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAEL 181 (365)
T ss_pred hhhcCCcccchhhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhccccc
Confidence 111110001 112357888888988876 4 58999999999999999999988 553
No 91
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=98.89 E-value=2.6e-09 Score=110.28 Aligned_cols=128 Identities=23% Similarity=0.318 Sum_probs=90.0
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC-cCCHHhHHHHcCc-eEEEEECCCC-CCCC--chhHH--Hh
Q 006979 473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYWTSRG-WAFVDVNYGG-STGY--GREFR--ER 545 (623)
Q Consensus 473 ~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~-~~~~~~~~~a~~G-~~v~~~d~rG-s~~~--g~~~~--~~ 545 (623)
..++.-++.|.. +.++.|+||++|||....... .....-+.|+++| ++|+.+|||= --|| ...+. +.
T Consensus 78 DCL~LNIwaP~~------~a~~~PVmV~IHGG~y~~Gs~s~~~ydgs~La~~g~vVvVSvNYRLG~lGfL~~~~~~~~~~ 151 (491)
T COG2272 78 DCLYLNIWAPEV------PAEKLPVMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALGFLDLSSLDTEDA 151 (491)
T ss_pred cceeEEeeccCC------CCCCCcEEEEEeccccccCCCcccccChHHHHhcCCEEEEEeCcccccceeeehhhcccccc
Confidence 357888888972 157789999999995322211 2224456789988 9999999993 2222 11111 11
Q ss_pred hccCCccchHHHHHHHHHHHHhC---CCCCCCceEEEEcChHHHHHHHHhcCC---CceeEEEecccCCC
Q 006979 546 LLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALAFR---DTFKAGASLYGVSI 609 (623)
Q Consensus 546 ~~~~~g~~~~~D~~~~~~~l~~~---~~~d~~rv~i~G~S~GG~~~~~~~~~~---~~f~a~v~~~g~~d 609 (623)
...+ .-..|++.|++|+.++ ---||++|-|+|.|+|++.++.++..| .+|+-+|+.+|..-
T Consensus 152 ~~~n---~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 152 FASN---LGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSGAAS 218 (491)
T ss_pred cccc---ccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcCccchHHHHHHHHhCCCCC
Confidence 1112 2378999999999875 226999999999999999999888654 48888888888764
No 92
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=98.87 E-value=9.5e-09 Score=99.09 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=73.7
Q ss_pred EEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceE
Q 006979 498 LVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLC 577 (623)
Q Consensus 498 iv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~ 577 (623)
||++||.+... ..|...+..| ++||.|+.+|+||.|...... .......++..+.+..++++ +..+++.
T Consensus 1 vv~~hG~~~~~--~~~~~~~~~l-~~~~~v~~~d~~G~G~s~~~~------~~~~~~~~~~~~~l~~~l~~--~~~~~~~ 69 (228)
T PF12697_consen 1 VVFLHGFGGSS--ESWDPLAEAL-ARGYRVIAFDLPGHGRSDPPP------DYSPYSIEDYAEDLAELLDA--LGIKKVI 69 (228)
T ss_dssp EEEE-STTTTG--GGGHHHHHHH-HTTSEEEEEECTTSTTSSSHS------SGSGGSHHHHHHHHHHHHHH--TTTSSEE
T ss_pred eEEECCCCCCH--HHHHHHHHHH-hCCCEEEEEecCCcccccccc------ccCCcchhhhhhhhhhcccc--ccccccc
Confidence 78999995443 5677778888 489999999999976544321 11223344444444444333 1227999
Q ss_pred EEEcChHHHHHHHHh-cCCCceeEEEecccCCCHH
Q 006979 578 ITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPV 611 (623)
Q Consensus 578 i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~ 611 (623)
++|||+||.+++.++ .+|+.++++|...|.....
T Consensus 70 lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~ 104 (228)
T PF12697_consen 70 LVGHSMGGMIALRLAARYPDRVKGLVLLSPPPPLP 104 (228)
T ss_dssp EEEETHHHHHHHHHHHHSGGGEEEEEEESESSSHH
T ss_pred ccccccccccccccccccccccccceeeccccccc
Confidence 999999999999999 7899999999999998754
No 93
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=98.86 E-value=3.5e-09 Score=110.36 Aligned_cols=115 Identities=23% Similarity=0.191 Sum_probs=69.2
Q ss_pred CCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCC------chhH-HHh------hc-------c---
Q 006979 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY------GREF-RER------LL-------G--- 548 (623)
Q Consensus 492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~------g~~~-~~~------~~-------~--- 548 (623)
.+++|+|||.||- +.....++..+..||++||+|+++|+|..... ...- ... .. .
T Consensus 97 ~~~~PvvIFSHGl--gg~R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T PF03403_consen 97 PGKFPVVIFSHGL--GGSRTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFDP 174 (379)
T ss_dssp SS-EEEEEEE--T--T--TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----G
T ss_pred CCCCCEEEEeCCC--CcchhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccccccc
Confidence 3679999999998 55666788999999999999999999953321 1110 000 00 0
Q ss_pred --------CCccchHHHHHHHHHHHHh--------------------CCCCCCCceEEEEcChHHHHHHHHhcCCCceeE
Q 006979 549 --------RWGIVDVNDCCSCATFLVG--------------------SGKADEKRLCITGGSAGGYTTLAALAFRDTFKA 600 (623)
Q Consensus 549 --------~~g~~~~~D~~~~~~~l~~--------------------~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a 600 (623)
.+-..-..|+..+++.|.+ ++.+|.+||+++|||+||.+++.++....+|+|
T Consensus 175 ~~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d~r~~~ 254 (379)
T PF03403_consen 175 EEEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQDTRFKA 254 (379)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH-TT--E
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhccCcce
Confidence 0000114567777777753 145788999999999999999999966688999
Q ss_pred EEecccCC
Q 006979 601 GASLYGVS 608 (623)
Q Consensus 601 ~v~~~g~~ 608 (623)
+|...|..
T Consensus 255 ~I~LD~W~ 262 (379)
T PF03403_consen 255 GILLDPWM 262 (379)
T ss_dssp EEEES---
T ss_pred EEEeCCcc
Confidence 99987753
No 94
>PLN02872 triacylglycerol lipase
Probab=98.85 E-value=5.1e-09 Score=109.77 Aligned_cols=145 Identities=19% Similarity=0.148 Sum_probs=97.4
Q ss_pred CCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcC----CHHhHHHHcCceEEEEECCCC
Q 006979 459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL----NLSIQYWTSRGWAFVDVNYGG 534 (623)
Q Consensus 459 ~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~----~~~~~~~a~~G~~v~~~d~rG 534 (623)
-..|+..+++. ||..+...-+.+.+.. . ...+.|.||++||...+...... ...+..|+++||.|+.+|.||
T Consensus 42 y~~e~h~v~T~-DGy~L~l~ri~~~~~~-~--~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG 117 (395)
T PLN02872 42 YSCTEHTIQTK-DGYLLALQRVSSRNPR-L--GSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRG 117 (395)
T ss_pred CCceEEEEECC-CCcEEEEEEcCCCCCC-C--CCCCCCeEEEeCcccccccceeecCcccchHHHHHhCCCCcccccccc
Confidence 36788888888 9998887666443211 0 02335789999998544433211 235556899999999999999
Q ss_pred CCC-CchhHHHhh-c----cCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCC---ceeEEEecc
Q 006979 535 STG-YGREFRERL-L----GRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRD---TFKAGASLY 605 (623)
Q Consensus 535 s~~-~g~~~~~~~-~----~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~---~f~a~v~~~ 605 (623)
.+. +|....... . ..|......|+.++++++.+.. .+++.++|||+||.+++.++.+|+ .++++++.+
T Consensus 118 ~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~~~p~~~~~v~~~~~l~ 194 (395)
T PLN02872 118 TRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAALTQPNVVEMVEAAALLC 194 (395)
T ss_pred cccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHhhChHHHHHHHHHHHhc
Confidence 653 232211111 1 1122233479999999998653 479999999999999997767765 678888888
Q ss_pred cCCCH
Q 006979 606 GVSIP 610 (623)
Q Consensus 606 g~~d~ 610 (623)
|+.-+
T Consensus 195 P~~~~ 199 (395)
T PLN02872 195 PISYL 199 (395)
T ss_pred chhhh
Confidence 87543
No 95
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=98.85 E-value=1.3e-08 Score=102.90 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=69.7
Q ss_pred CEEEEecCCCCCcccC-cCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCC
Q 006979 496 PLLVKSHGGPTSEARG-ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (623)
Q Consensus 496 Pliv~~hGg~~~~~~~-~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~ 574 (623)
|.||++||.+...... .+......+++.||.|+++|+||.|....... .........+|+.+.++.+ +.+
T Consensus 31 ~~ivllHG~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~---~~~~~~~~~~~l~~~l~~l------~~~ 101 (282)
T TIGR03343 31 EAVIMLHGGGPGAGGWSNYYRNIGPFVDAGYRVILKDSPGFNKSDAVVM---DEQRGLVNARAVKGLMDAL------DIE 101 (282)
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHHHhCCCEEEEECCCCCCCCCCCcC---cccccchhHHHHHHHHHHc------CCC
Confidence 5689999974333211 11123456778899999999999765432110 0111112345655555554 457
Q ss_pred ceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979 575 RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV 607 (623)
Q Consensus 575 rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~ 607 (623)
++.++|||+||++++.++ .+|++++++|+..|.
T Consensus 102 ~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~ 135 (282)
T TIGR03343 102 KAHLVGNSMGGATALNFALEYPDRIGKLILMGPG 135 (282)
T ss_pred CeeEEEECchHHHHHHHHHhChHhhceEEEECCC
Confidence 999999999999999998 789999999998764
No 96
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=98.84 E-value=2.8e-09 Score=105.84 Aligned_cols=135 Identities=20% Similarity=0.258 Sum_probs=86.1
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCC-CCCcccCcCCHHhHHHHcCc----eEEEEECCCCCCCCchhHHH-
Q 006979 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGG-PTSEARGILNLSIQYWTSRG----WAFVDVNYGGSTGYGREFRE- 544 (623)
Q Consensus 471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg-~~~~~~~~~~~~~~~~a~~G----~~v~~~d~rGs~~~g~~~~~- 544 (623)
-|.....++|.|.+ |.. .+++|+|++.||. .+... .......+.+...| .+++.++..+.......|..
T Consensus 4 Lg~~~~~~VylP~~--y~~--~~~~PvlylldG~~~~~~~-~~~~~~~~~~~~~~~~~~~iiV~i~~~~~~~~~~~~~~~ 78 (251)
T PF00756_consen 4 LGRDRRVWVYLPPG--YDP--SKPYPVLYLLDGQSGWFRN-GNAQEALDRLIAEGKIPPMIIVVIPNGDNSRFYTSWYLP 78 (251)
T ss_dssp TTEEEEEEEEECTT--GGT--TTTEEEEEEESHTTHHHHH-HHHHHHHHHHHHHHTSEEEEEEEEESSSTSSTTSBTTSS
T ss_pred cCCeEEEEEEECCC--CCC--CCCCEEEEEccCCcccccc-chHHHHHHHHHHhCCCCceEEEEEecccccccccccccc
Confidence 47788999999988 533 8899999999995 11110 01112233334444 55565555443311111110
Q ss_pred -----hhccCCccchHHHHH--HHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979 545 -----RLLGRWGIVDVNDCC--SCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP 610 (623)
Q Consensus 545 -----~~~~~~g~~~~~D~~--~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~ 610 (623)
......+...+++.+ +.+.++.++-.+++++.+|+|+|+||+.++.++ +||+.|.++++++|..+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~ 152 (251)
T PF00756_consen 79 AGSSRRADDSGGGDAYETFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDP 152 (251)
T ss_dssp BCTTCBCTSTTTHHHHHHHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESET
T ss_pred cccccccccCCCCcccceehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCccccc
Confidence 011112222334433 667788887777777799999999999999999 999999999999988554
No 97
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=98.83 E-value=3.1e-08 Score=97.26 Aligned_cols=137 Identities=19% Similarity=0.146 Sum_probs=96.3
Q ss_pred CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (623)
Q Consensus 460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g 539 (623)
..|.+.++. .|.....|...|.+ .+.|+||.+||-.++...+........+.++||.|+++|.||+++.-
T Consensus 50 ~re~v~~pd--g~~~~ldw~~~p~~--------~~~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~ 119 (345)
T COG0429 50 TRERLETPD--GGFIDLDWSEDPRA--------AKKPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEA 119 (345)
T ss_pred ceEEEEcCC--CCEEEEeeccCccc--------cCCceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCc
Confidence 334444433 34555567666654 45599999999866666665556778888999999999999987643
Q ss_pred hhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHH-HHHHHHhcC--CCceeEEEecccCCCHHH
Q 006979 540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGG-YTTLAALAF--RDTFKAGASLYGVSIPVI 612 (623)
Q Consensus 540 ~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG-~~~~~~~~~--~~~f~a~v~~~g~~d~~~ 612 (623)
.. ...-+-..+.+|+..+++++.+++ -+.++.++|+|+|| .++.+++.. .-...|++..+-+.|+..
T Consensus 120 n~----~p~~yh~G~t~D~~~~l~~l~~~~--~~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl~~ 189 (345)
T COG0429 120 NT----SPRLYHSGETEDIRFFLDWLKARF--PPRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDLEA 189 (345)
T ss_pred cc----CcceecccchhHHHHHHHHHHHhC--CCCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHHHHH
Confidence 32 112222334699999999999864 26799999999999 666666633 335677888877778743
No 98
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=98.81 E-value=3.5e-08 Score=103.00 Aligned_cols=134 Identities=13% Similarity=0.102 Sum_probs=88.2
Q ss_pred CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcc---cCcCCHHhHHHHcCceEEEEECCCCCC
Q 006979 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA---RGILNLSIQYWTSRGWAFVDVNYGGST 536 (623)
Q Consensus 460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~---~~~~~~~~~~~a~~G~~v~~~d~rGs~ 536 (623)
+|..+.+.. +. +..+.|.|.... ..+.| ||++||-..... .......+.+|+++||.|+.+|+||.+
T Consensus 37 ~~~~~v~~~--~~--~~l~~~~~~~~~-----~~~~p-vl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~g 106 (350)
T TIGR01836 37 TPKEVVYRE--DK--VVLYRYTPVKDN-----THKTP-LLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGYPD 106 (350)
T ss_pred CCCceEEEc--Cc--EEEEEecCCCCc-----CCCCc-EEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCCCC
Confidence 445555544 34 344445565311 22345 777887421111 112356899999999999999999854
Q ss_pred CCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHH
Q 006979 537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPV 611 (623)
Q Consensus 537 ~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~ 611 (623)
. .-. ...+.....+|+.++++++.++. ..++|.++|||+||.+++.++ .+++.++++|..+++.|+.
T Consensus 107 ~---s~~---~~~~~d~~~~~~~~~v~~l~~~~--~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~~ 174 (350)
T TIGR01836 107 R---ADR---YLTLDDYINGYIDKCVDYICRTS--KLDQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDFE 174 (350)
T ss_pred H---HHh---cCCHHHHHHHHHHHHHHHHHHHh--CCCcccEEEECHHHHHHHHHHHhCchheeeEEEeccccccC
Confidence 2 111 11111222356888999998763 346999999999999999887 7899999999999988753
No 99
>PRK11460 putative hydrolase; Provisional
Probab=98.80 E-value=2e-08 Score=98.14 Aligned_cols=113 Identities=16% Similarity=0.098 Sum_probs=76.9
Q ss_pred CCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCC----CCchhHHHhhccCCccc-------hHHHHHH
Q 006979 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST----GYGREFRERLLGRWGIV-------DVNDCCS 560 (623)
Q Consensus 492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~----~~g~~~~~~~~~~~g~~-------~~~D~~~ 560 (623)
....|+||++||.+ .....+...+..|+.+++.+..+.++|.. +.|+.|... .+..... ..+.+.+
T Consensus 13 ~~~~~~vIlLHG~G--~~~~~~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~-~~~~~~~~~~~~~~~~~~l~~ 89 (232)
T PRK11460 13 KPAQQLLLLFHGVG--DNPVAMGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSV-QGITEDNRQARVAAIMPTFIE 89 (232)
T ss_pred CCCCcEEEEEeCCC--CChHHHHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccC-CCCCccchHHHHHHHHHHHHH
Confidence 34568999999983 34446677888888877666666666532 123444321 1111111 1233445
Q ss_pred HHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979 561 CATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV 607 (623)
Q Consensus 561 ~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~ 607 (623)
.++++.++..++++||+++|+|+||.+++.++ .+|++++++|+++|.
T Consensus 90 ~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~ 137 (232)
T PRK11460 90 TVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGR 137 (232)
T ss_pred HHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEeccc
Confidence 66777777678999999999999999999988 789989988888775
No 100
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.80 E-value=3.5e-06 Score=90.21 Aligned_cols=216 Identities=10% Similarity=0.018 Sum_probs=130.3
Q ss_pred ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCC---C
Q 006979 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM---P 269 (623)
Q Consensus 193 ~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~---p 269 (623)
.....+||||++++|.....+. ....|+++|+++|+. +........+ ....|++||+.++|+..+.... .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~----e~~~l~v~Dl~tg~~--l~d~i~~~~~-~~~~W~~d~~~~~y~~~~~~~~~~~~ 198 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGS----EWYTLRVFDLETGKF--LPDGIENPKF-SSVSWSDDGKGFFYTRFDEDQRTSDS 198 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTS----SEEEEEEEETTTTEE--EEEEEEEEES-EEEEECTTSSEEEEEECSTTTSS-CC
T ss_pred eeeeeECCCCCEEEEEecCCCC----ceEEEEEEECCCCcC--cCCccccccc-ceEEEeCCCCEEEEEEeCcccccccC
Confidence 3467899999999998776543 247899999999862 1111122222 2278999999999999877532 0
Q ss_pred CCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCC-----eEEEEeec
Q 006979 270 WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN-----EVLAIYSL 343 (623)
Q Consensus 270 ~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~-----~~~~l~~~ 343 (623)
....+||+..+.+... ....++.+.+.. .....+.+++||+ +++.+........+|.++...+ +.+.|.+.
T Consensus 199 ~~~~~v~~~~~gt~~~-~d~lvfe~~~~~--~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~ 275 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQS-EDELVFEEPDEP--FWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPR 275 (414)
T ss_dssp GCCEEEEEEETTS-GG-G-EEEEC-TTCT--TSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEES
T ss_pred CCCcEEEEEECCCChH-hCeeEEeecCCC--cEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCC
Confidence 0145799998876632 123455544422 1134678899999 5544554222378999998775 56777653
Q ss_pred ccccccccccccCcceeEEeecCCCCEEEEEEEECC-eEEEEEEeCCCCc---ee-ecccCCc--ceEeeeecCCEEEEE
Q 006979 344 DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG-RSYLGILDDFGHS---LS-LLDIPFT--DIDNITLGNDCLFVE 416 (623)
Q Consensus 344 ~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g-~~~L~~~d~~~~~---~~-~lt~~~~--~v~~~~~~~~~~~~~ 416 (623)
..... .+.-. .++.+|+.++.+. ..+|+.++++... ++ .+..+.. .+..+...++.+++.
T Consensus 276 ~~~~~---------~~v~~----~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~ 342 (414)
T PF02897_consen 276 EDGVE---------YYVDH----HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLS 342 (414)
T ss_dssp SSS-E---------EEEEE----ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEE
T ss_pred CCceE---------EEEEc----cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEE
Confidence 21111 01111 4667777776543 5689999988765 33 3433333 355666778888777
Q ss_pred EecCCCCCeEEEEEcC
Q 006979 417 GASGVEPSSVAKVTLD 432 (623)
Q Consensus 417 ~~s~~~~~~ly~~~l~ 432 (623)
..... .++|.++++.
T Consensus 343 ~~~~~-~~~l~v~~~~ 357 (414)
T PF02897_consen 343 YRENG-SSRLRVYDLD 357 (414)
T ss_dssp EEETT-EEEEEEEETT
T ss_pred EEECC-ccEEEEEECC
Confidence 65433 4589999988
No 101
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=98.79 E-value=2.5e-08 Score=97.74 Aligned_cols=102 Identities=15% Similarity=0.136 Sum_probs=73.2
Q ss_pred CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHH-HHHHHhCCCCCCC
Q 006979 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSC-ATFLVGSGKADEK 574 (623)
Q Consensus 496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~-~~~l~~~~~~d~~ 574 (623)
|.||++||.+. ....|......|+ +||.|+.+|+||.|..... ......+.+++... +..+.+. .+.+
T Consensus 2 ~~vv~~hG~~~--~~~~~~~~~~~L~-~~~~v~~~d~~g~G~s~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~ 70 (251)
T TIGR03695 2 PVLVFLHGFLG--SGADWQALIELLG-PHFRCLAIDLPGHGSSQSP------DEIERYDFEEAAQDILATLLDQ--LGIE 70 (251)
T ss_pred CEEEEEcCCCC--chhhHHHHHHHhc-ccCeEEEEcCCCCCCCCCC------CccChhhHHHHHHHHHHHHHHH--cCCC
Confidence 67999999843 3335667777887 8999999999996654221 11112334555544 5555443 2457
Q ss_pred ceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979 575 RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608 (623)
Q Consensus 575 rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~ 608 (623)
++.++|||+||++++.++ .+|+.+++++...+..
T Consensus 71 ~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~ 105 (251)
T TIGR03695 71 PFFLVGYSMGGRIALYYALQYPERVQGLILESGSP 105 (251)
T ss_pred eEEEEEeccHHHHHHHHHHhCchheeeeEEecCCC
Confidence 999999999999999998 7899999999887654
No 102
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=98.79 E-value=2.7e-09 Score=118.29 Aligned_cols=127 Identities=21% Similarity=0.214 Sum_probs=81.6
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC--cCCHHhHHHHcCceEEEEECCCC-CCCCchhHHHhh-cc
Q 006979 473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG--ILNLSIQYWTSRGWAFVDVNYGG-STGYGREFRERL-LG 548 (623)
Q Consensus 473 ~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~--~~~~~~~~~a~~G~~v~~~d~rG-s~~~g~~~~~~~-~~ 548 (623)
..++.-+|.|.+.. ...++|++|++|||....... ........+++++++|+.+|||= .-|+-..-.... .+
T Consensus 107 DCL~LnI~~P~~~~----~~~~lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~~Gfl~~~~~~~~~g 182 (535)
T PF00135_consen 107 DCLYLNIYTPSNAS----SNSKLPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGAFGFLSLGDLDAPSG 182 (535)
T ss_dssp ---EEEEEEETSSS----STTSEEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HHHHH-BSSSTTSHBS
T ss_pred hHHHHhhhhccccc----cccccceEEEeecccccCCCcccccccccccccCCCEEEEEecccccccccccccccccCch
Confidence 35888889998732 133789999999996443333 22334556778999999999992 111100000001 23
Q ss_pred CCccchHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHh-c--CCCceeEEEeccc
Q 006979 549 RWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAAL-A--FRDTFKAGASLYG 606 (623)
Q Consensus 549 ~~g~~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~-~--~~~~f~a~v~~~g 606 (623)
++ -..|++.|++|+.++- --||+||-|+|+|+||..+..++ . ...+|+.+|+.+|
T Consensus 183 N~---Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SG 243 (535)
T PF00135_consen 183 NY---GLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSG 243 (535)
T ss_dssp TH---HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES-
T ss_pred hh---hhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeecccccccccccccccc
Confidence 44 4789999999998852 26999999999999999999887 3 2569999999999
No 103
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.77 E-value=1.6e-05 Score=82.34 Aligned_cols=219 Identities=11% Similarity=0.047 Sum_probs=115.1
Q ss_pred EEEeCC--EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 006979 150 FRIFGD--TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (623)
Q Consensus 150 ~~~s~d--~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~id 227 (623)
.+++++ .++.....++.|.+++++..+...+.+..... ...-....++|||++++...... +.|+++|
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~~p~g~~l~v~~~~~--------~~v~v~d 154 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG--LEGCHSANIDPDNRTLWVPCLKE--------DRIRLFT 154 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC--CCcccEeEeCCCCCEEEEeeCCC--------CEEEEEE
Confidence 444444 56666666777888887632011111111000 01112356899999887655432 5688888
Q ss_pred cCC-CCccc----ceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCC-CceeeeEEEcCCCCC--c
Q 006979 228 LNG-QNIQE----PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN-GDVYKRVCVAGFDPT--I 299 (623)
Q Consensus 228 l~~-g~~~~----~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~-~~~~~~~~~~~~~~~--~ 299 (623)
+++ +.... ...+..+ .......|+|||++|+..... ...|.+++++.. +.+.....+...+.. .
T Consensus 155 ~~~~g~l~~~~~~~~~~~~g-~~p~~~~~~pdg~~lyv~~~~-------~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~ 226 (330)
T PRK11028 155 LSDDGHLVAQEPAEVTTVEG-AGPRHMVFHPNQQYAYCVNEL-------NSSVDVWQLKDPHGEIECVQTLDMMPADFSD 226 (330)
T ss_pred ECCCCcccccCCCceecCCC-CCCceEEECCCCCEEEEEecC-------CCEEEEEEEeCCCCCEEEEEEEecCCCcCCC
Confidence 876 33110 0111122 222346799999988766421 345888888743 222111111111100 0
Q ss_pred cccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECC
Q 006979 300 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG 379 (623)
Q Consensus 300 ~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g 379 (623)
........++|||+.+|++++..+...++.++.+++..+.+..... + .....+.+. ++++.||.+...++
T Consensus 227 ~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~-----~~p~~~~~~---~dg~~l~va~~~~~ 296 (330)
T PRK11028 227 TRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT--E-----TQPRGFNID---HSGKYLIAAGQKSH 296 (330)
T ss_pred CccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--c-----ccCCceEEC---CCCCEEEEEEccCC
Confidence 0122346789999977777764455566666555444333221110 1 012234444 38888888776677
Q ss_pred eEEEEEEeCCCCceeec
Q 006979 380 RSYLGILDDFGHSLSLL 396 (623)
Q Consensus 380 ~~~L~~~d~~~~~~~~l 396 (623)
.-.+|.+|.+++.++.+
T Consensus 297 ~v~v~~~~~~~g~l~~~ 313 (330)
T PRK11028 297 HISVYEIDGETGLLTEL 313 (330)
T ss_pred cEEEEEEcCCCCcEEEc
Confidence 78888888777766544
No 104
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.77 E-value=8.2e-07 Score=87.83 Aligned_cols=218 Identities=14% Similarity=0.122 Sum_probs=124.9
Q ss_pred CCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeC-CCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 006979 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFD-PRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (623)
Q Consensus 154 ~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~s-PdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~ 232 (623)
.+.++|++...++||+++++++ ..+.+... . .....++ ++|+ +++... ..+.++|+.+++
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~--~~~~~~~~----~--~~G~~~~~~~g~-l~v~~~----------~~~~~~d~~~g~ 71 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTG--EVEVIDLP----G--PNGMAFDRPDGR-LYVADS----------GGIAVVDPDTGK 71 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTT--EEEEEESS----S--EEEEEEECTTSE-EEEEET----------TCEEEEETTTTE
T ss_pred CCEEEEEEcCCCEEEEEECCCC--eEEEEecC----C--CceEEEEccCCE-EEEEEc----------CceEEEecCCCc
Confidence 4589999988899999999876 44444432 1 3345566 6764 444333 235666999887
Q ss_pred cccceecccC---C---CcccceeeCCCCCEEEEEEecCCCCCCCc--eEEEEEEecCCCceeeeEEEcCCCCCccccCc
Q 006979 233 IQEPKVLVSG---S---DFYAFPRMDPRGERMAWIEWHHPNMPWDK--AELWVGYISENGDVYKRVCVAGFDPTIVESPT 304 (623)
Q Consensus 233 ~~~~~~l~~~---~---~~~~~p~wSPDG~~la~~~~~~~~~p~~~--~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (623)
.+.+... . ...+...++|||+ |++........ ... ..||+++.+ + ....+..+. ....
T Consensus 72 ---~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~-~~~~~g~v~~~~~~-~---~~~~~~~~~-----~~pN 137 (246)
T PF08450_consen 72 ---VTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGA-SGIDPGSVYRIDPD-G---KVTVVADGL-----GFPN 137 (246)
T ss_dssp ---EEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCT-TCGGSEEEEEEETT-S---EEEEEEEEE-----SSEE
T ss_pred ---EEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCcc-ccccccceEEECCC-C---eEEEEecCc-----cccc
Confidence 4544332 2 2245567999998 77776443221 112 679999887 3 133333332 3456
Q ss_pred CceeCCCCcEEEEEeCCCCeeeEEEEecCC--CeE---EEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECC
Q 006979 305 EPKWSSKGELFFVTDRKNGFWNLHKWIESN--NEV---LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG 379 (623)
Q Consensus 305 ~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~--~~~---~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g 379 (623)
...|+|||+.+|+++. ...+|++++++. .+. +.+.......+. .+.+.+- ..+.||++.. +
T Consensus 138 Gi~~s~dg~~lyv~ds--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~------pDG~~vD----~~G~l~va~~--~ 203 (246)
T PF08450_consen 138 GIAFSPDGKTLYVADS--FNGRIWRFDLDADGGELSNRRVFIDFPGGPGY------PDGLAVD----SDGNLWVADW--G 203 (246)
T ss_dssp EEEEETTSSEEEEEET--TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCE------EEEEEEB----TTS-EEEEEE--T
T ss_pred ceEECCcchheeeccc--ccceeEEEeccccccceeeeeeEEEcCCCCcC------CCcceEc----CCCCEEEEEc--C
Confidence 8999999996666665 444688888753 311 222221111111 1334443 3445666543 4
Q ss_pred eEEEEEEeCCCCceeecccCCcceEee---eecCCEEEEEEe
Q 006979 380 RSYLGILDDFGHSLSLLDIPFTDIDNI---TLGNDCLFVEGA 418 (623)
Q Consensus 380 ~~~L~~~d~~~~~~~~lt~~~~~v~~~---~~~~~~~~~~~~ 418 (623)
..+|+++++++..+..+..+......+ -++.+++|++.+
T Consensus 204 ~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 204 GGRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp TTEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred CCEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 457889999976677777774444444 245667776653
No 105
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=98.76 E-value=4.9e-08 Score=98.06 Aligned_cols=104 Identities=14% Similarity=0.184 Sum_probs=72.3
Q ss_pred CCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHH-HHHhCCCC
Q 006979 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCAT-FLVGSGKA 571 (623)
Q Consensus 493 ~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~-~l~~~~~~ 571 (623)
+..|.||++||... ....|......|.++||.|+.+|+||.|..... . -.....++....+. ++.+.+
T Consensus 16 ~~~p~vvliHG~~~--~~~~w~~~~~~L~~~g~~vi~~dl~g~G~s~~~-----~--~~~~~~~~~~~~l~~~i~~l~-- 84 (273)
T PLN02211 16 RQPPHFVLIHGISG--GSWCWYKIRCLMENSGYKVTCIDLKSAGIDQSD-----A--DSVTTFDEYNKPLIDFLSSLP-- 84 (273)
T ss_pred CCCCeEEEECCCCC--CcCcHHHHHHHHHhCCCEEEEecccCCCCCCCC-----c--ccCCCHHHHHHHHHHHHHhcC--
Confidence 34588999999843 334667778888889999999999996542110 0 01123444443333 333332
Q ss_pred CCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979 572 DEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV 607 (623)
Q Consensus 572 d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~ 607 (623)
+.+++.++||||||.+++.++ .+|++++++|...+.
T Consensus 85 ~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~ 121 (273)
T PLN02211 85 ENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAAT 121 (273)
T ss_pred CCCCEEEEEECchHHHHHHHHHhChhheeEEEEeccc
Confidence 237999999999999999888 789999999988553
No 106
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=98.76 E-value=7e-08 Score=97.06 Aligned_cols=107 Identities=12% Similarity=0.037 Sum_probs=71.8
Q ss_pred CCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCC
Q 006979 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (623)
Q Consensus 495 ~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~ 574 (623)
.|.||++||++++.. ..+......+.+.||.|+.+|+||.|..... .........++..+.+..+.++ .+.+
T Consensus 25 ~~~vl~~hG~~g~~~-~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~ 96 (288)
T TIGR01250 25 KIKLLLLHGGPGMSH-EYLENLRELLKEEGREVIMYDQLGCGYSDQP-----DDSDELWTIDYFVDELEEVREK--LGLD 96 (288)
T ss_pred CCeEEEEcCCCCccH-HHHHHHHHHHHhcCCEEEEEcCCCCCCCCCC-----CcccccccHHHHHHHHHHHHHH--cCCC
Confidence 467888999865432 2333445555556999999999996653221 0000012345555555555554 2346
Q ss_pred ceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979 575 RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI 609 (623)
Q Consensus 575 rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d 609 (623)
++.++|||+||.+++.++ .+|+.++++|...++..
T Consensus 97 ~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 132 (288)
T TIGR01250 97 KFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLDS 132 (288)
T ss_pred cEEEEEeehHHHHHHHHHHhCccccceeeEeccccc
Confidence 799999999999999988 88999999998877643
No 107
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.76 E-value=9.1e-06 Score=83.14 Aligned_cols=243 Identities=10% Similarity=0.059 Sum_probs=125.2
Q ss_pred EEEEEeC---------CCCcEEEEeCCCCCCCceecCCCCCCCC----eeecceeeCCCCCEEEEEEeccCCCCCCceeE
Q 006979 156 TVIFSNY---------KDQRLYKHSIDSKDSSPLPITPDYGEPL----VSYADGIFDPRFNRYVTVREDRRQDALNSTTE 222 (623)
Q Consensus 156 ~l~f~~~---------~~~~l~~~d~~~g~~~~~~Lt~~~~~~~----~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~ 222 (623)
.+|.... .+..|-++|+.+. .....|.-+. .|. ..-..+.+||||+++++..++. .+.
T Consensus 59 ~lyva~~~~~R~~~G~~~d~V~v~D~~t~-~~~~~i~~p~-~p~~~~~~~~~~~~ls~dgk~l~V~n~~p-------~~~ 129 (352)
T TIGR02658 59 FFAHASTVYSRIARGKRTDYVEVIDPQTH-LPIADIELPE-GPRFLVGTYPWMTSLTPDNKTLLFYQFSP-------SPA 129 (352)
T ss_pred EEEEEeccccccccCCCCCEEEEEECccC-cEEeEEccCC-CchhhccCccceEEECCCCCEEEEecCCC-------CCE
Confidence 5666555 4566999999886 2333444321 111 1123578999999887765542 267
Q ss_pred EEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCC-CCCceEEEEEEecCCCc--eeeeEEEcCCCCCc
Q 006979 223 IVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM-PWDKAELWVGYISENGD--VYKRVCVAGFDPTI 299 (623)
Q Consensus 223 L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~-p~~~~~L~v~d~~~~~~--~~~~~~~~~~~~~~ 299 (623)
+-++|+.+++. +..+.- ||++.++-.. +...| -+....+..+.+++.+. .....++.+.+ +
T Consensus 130 V~VvD~~~~kv--v~ei~v-----------p~~~~vy~t~-e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~-~- 193 (352)
T TIGR02658 130 VGVVDLEGKAF--VRMMDV-----------PDCYHIFPTA-NDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPED-E- 193 (352)
T ss_pred EEEEECCCCcE--EEEEeC-----------CCCcEEEEec-CCccEEEeecCceEEEEecCCCceEEeeeeeecCCc-c-
Confidence 99999999873 222322 3333222111 11110 00001122222222221 11122222211 1
Q ss_pred cccCcCceeCC-CCcEEEEEeCCCCeeeEEEEecCCCeEEEEeec---ccccccccccccCc-ceeEEeecCCCCEEEEE
Q 006979 300 VESPTEPKWSS-KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL---DAEFSRPLWVFGIN-SYEIIQSHGEKNLIACS 374 (623)
Q Consensus 300 ~~~~~~~~ws~-DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~---~~~~~~~~w~~~~~-~~~~l~~s~~~~~l~~~ 374 (623)
.-...|.+++ ||+.+|++.. ..++.+|+.+.+......- ........|.++.- .+.+ +++++++|+.
T Consensus 194 -~v~~rP~~~~~dg~~~~vs~e----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~---~~dg~~lyV~ 265 (352)
T TIGR02658 194 -YLINHPAYSNKSGRLVWPTYT----GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAY---HRARDRIYLL 265 (352)
T ss_pred -ccccCCceEcCCCcEEEEecC----CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEE---cCCCCEEEEE
Confidence 2223555566 8888888876 5788888766543332211 11111225665432 2333 3488888885
Q ss_pred EE-------ECCeEEEEEEeCCCCcee-ecccCCcceEe--eeecCC-EEEEEEecCCCCCeEEEEEcCCCc
Q 006979 375 YR-------QNGRSYLGILDDFGHSLS-LLDIPFTDIDN--ITLGND-CLFVEGASGVEPSSVAKVTLDDHK 435 (623)
Q Consensus 375 ~~-------~~g~~~L~~~d~~~~~~~-~lt~~~~~v~~--~~~~~~-~~~~~~~s~~~~~~ly~~~l~~~~ 435 (623)
.. .++..+++.+|..+++.. ++..+.. ..+ ++++++ .+|.+... ...|..+|.++++
T Consensus 266 ~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~-~~~iavS~Dgkp~lyvtn~~---s~~VsViD~~t~k 333 (352)
T TIGR02658 266 ADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHE-IDSINVSQDAKPLLYALSTG---DKTLYIFDAETGK 333 (352)
T ss_pred ecCCccccccCCCCEEEEEECCCCeEEEEEeCCCc-eeeEEECCCCCeEEEEeCCC---CCcEEEEECcCCe
Confidence 43 223468999999888764 4554432 223 378888 54444322 2458899988875
No 108
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=98.75 E-value=2.3e-08 Score=98.11 Aligned_cols=101 Identities=16% Similarity=0.081 Sum_probs=70.6
Q ss_pred CCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCC
Q 006979 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (623)
Q Consensus 494 ~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~ 573 (623)
..|+||++||.+.. ...|...++.+. +||.|+.+|+||.|..... ......++..+.+..+++. .+.
T Consensus 12 ~~~~li~~hg~~~~--~~~~~~~~~~l~-~~~~v~~~d~~G~G~s~~~--------~~~~~~~~~~~~~~~~i~~--~~~ 78 (251)
T TIGR02427 12 GAPVLVFINSLGTD--LRMWDPVLPALT-PDFRVLRYDKRGHGLSDAP--------EGPYSIEDLADDVLALLDH--LGI 78 (251)
T ss_pred CCCeEEEEcCcccc--hhhHHHHHHHhh-cccEEEEecCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHH--hCC
Confidence 45899999997433 334555666664 6899999999997654221 1122455555555554443 234
Q ss_pred CceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979 574 KRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV 607 (623)
Q Consensus 574 ~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~ 607 (623)
+++.++|||+||++++.++ .+|+.++++|...+.
T Consensus 79 ~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~ 113 (251)
T TIGR02427 79 ERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTA 113 (251)
T ss_pred CceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCc
Confidence 6899999999999999888 778999988877654
No 109
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=98.73 E-value=4.2e-08 Score=101.39 Aligned_cols=132 Identities=20% Similarity=0.171 Sum_probs=85.3
Q ss_pred eecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC--------------------cC----CHHhHHHH
Q 006979 466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG--------------------IL----NLSIQYWT 521 (623)
Q Consensus 466 ~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~--------------------~~----~~~~~~~a 521 (623)
|.+. +|..|+.+.+.|.+ +..+|+++||-....... .| ...++.|+
T Consensus 2 ~~~~-~g~~l~~~~~~~~~---------~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~ 71 (332)
T TIGR01607 2 FRNK-DGLLLKTYSWIVKN---------AIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFN 71 (332)
T ss_pred ccCC-CCCeEEEeeeeccC---------CeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHH
Confidence 3455 88889988888753 236999999963222111 11 24688999
Q ss_pred cCceEEEEECCCCCCCCchhHHHhhc-cCCccchHHHHHHHHHHHHhC------------------CCCCCCceEEEEcC
Q 006979 522 SRGWAFVDVNYGGSTGYGREFRERLL-GRWGIVDVNDCCSCATFLVGS------------------GKADEKRLCITGGS 582 (623)
Q Consensus 522 ~~G~~v~~~d~rGs~~~g~~~~~~~~-~~~g~~~~~D~~~~~~~l~~~------------------~~~d~~rv~i~G~S 582 (623)
++||.|+.+|.||.|.....-..... ..| ..-++|+...++.+.++ ..-+...+.|+|||
T Consensus 72 ~~G~~V~~~D~rGHG~S~~~~~~~g~~~~~-~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhS 150 (332)
T TIGR01607 72 KNGYSVYGLDLQGHGESDGLQNLRGHINCF-DDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLS 150 (332)
T ss_pred HCCCcEEEecccccCCCccccccccchhhH-HHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeecc
Confidence 99999999999997754321000000 111 12246777777776542 01113579999999
Q ss_pred hHHHHHHHHh-cCCC--------ceeEEEecccCC
Q 006979 583 AGGYTTLAAL-AFRD--------TFKAGASLYGVS 608 (623)
Q Consensus 583 ~GG~~~~~~~-~~~~--------~f~a~v~~~g~~ 608 (623)
|||.+++..+ .+++ .++++|+.+|..
T Consensus 151 mGg~i~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~ 185 (332)
T TIGR01607 151 MGGNIALRLLELLGKSNENNDKLNIKGCISLSGMI 185 (332)
T ss_pred CccHHHHHHHHHhccccccccccccceEEEeccce
Confidence 9999999877 4432 588999888764
No 110
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=98.72 E-value=3.8e-08 Score=97.30 Aligned_cols=104 Identities=15% Similarity=0.152 Sum_probs=70.2
Q ss_pred CCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCC
Q 006979 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (623)
Q Consensus 494 ~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~ 573 (623)
..|.||++||.+.. ...|...+..+. +||.|+++|+||.|...... .. ....+|....+..++++ .+.
T Consensus 12 ~~~~iv~lhG~~~~--~~~~~~~~~~l~-~~~~vi~~D~~G~G~S~~~~----~~---~~~~~~~~~~~~~~i~~--~~~ 79 (257)
T TIGR03611 12 DAPVVVLSSGLGGS--GSYWAPQLDVLT-QRFHVVTYDHRGTGRSPGEL----PP---GYSIAHMADDVLQLLDA--LNI 79 (257)
T ss_pred CCCEEEEEcCCCcc--hhHHHHHHHHHH-hccEEEEEcCCCCCCCCCCC----cc---cCCHHHHHHHHHHHHHH--hCC
Confidence 45789999998543 234444555554 57999999999977654321 11 12234443333333332 235
Q ss_pred CceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979 574 KRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI 609 (623)
Q Consensus 574 ~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d 609 (623)
+++.++|+|+||++++.++ .+|+.++++|...+..+
T Consensus 80 ~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~ 116 (257)
T TIGR03611 80 ERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSR 116 (257)
T ss_pred CcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCC
Confidence 7899999999999999998 78889999998887543
No 111
>PLN02965 Probable pheophorbidase
Probab=98.71 E-value=6.3e-08 Score=96.40 Aligned_cols=100 Identities=15% Similarity=0.136 Sum_probs=70.0
Q ss_pred EEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCC-Cc
Q 006979 497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE-KR 575 (623)
Q Consensus 497 liv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~-~r 575 (623)
.||++||.+. ....|...+..|+++||.|+++|+||.|.+... .. .....+++.+-+..+++. .+. ++
T Consensus 5 ~vvllHG~~~--~~~~w~~~~~~L~~~~~~via~Dl~G~G~S~~~-----~~--~~~~~~~~a~dl~~~l~~--l~~~~~ 73 (255)
T PLN02965 5 HFVFVHGASH--GAWCWYKLATLLDAAGFKSTCVDLTGAGISLTD-----SN--TVSSSDQYNRPLFALLSD--LPPDHK 73 (255)
T ss_pred EEEEECCCCC--CcCcHHHHHHHHhhCCceEEEecCCcCCCCCCC-----cc--ccCCHHHHHHHHHHHHHh--cCCCCC
Confidence 4899999853 334566778888899999999999997654321 00 112234444433333332 112 59
Q ss_pred eEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979 576 LCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV 607 (623)
Q Consensus 576 v~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~ 607 (623)
+.++||||||.+++.++ .+|++++.+|...+.
T Consensus 74 ~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~ 106 (255)
T PLN02965 74 VILVGHSIGGGSVTEALCKFTDKISMAIYVAAA 106 (255)
T ss_pred EEEEecCcchHHHHHHHHhCchheeEEEEEccc
Confidence 99999999999999988 889999998877654
No 112
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.71 E-value=5.9e-07 Score=98.73 Aligned_cols=158 Identities=11% Similarity=0.092 Sum_probs=98.9
Q ss_pred CCEEEEEe-------CCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCC---CCCCceeEE
Q 006979 154 GDTVIFSN-------YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQ---DALNSTTEI 223 (623)
Q Consensus 154 ~d~l~f~~-------~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~---~~~~~~~~L 223 (623)
++.++|+. ....+||+.+.. + ..++++.+ .....|+|||||++|+++...... .......+|
T Consensus 361 G~~vA~v~~~~~~~~d~~s~Lwv~~~g-g--~~~~lt~g-----~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql 432 (591)
T PRK13616 361 GRQVAAVVTLGRGAPDPASSLWVGPLG-G--VAVQVLEG-----HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQL 432 (591)
T ss_pred CCEEEEEEeecCCCCCcceEEEEEeCC-C--cceeeecC-----CCCCCceECCCCCceEEEecCcceEEEeccCCCceE
Confidence 34777776 223469999874 3 45788765 236789999999999988643110 001123689
Q ss_pred EEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEec--CCCc--eeeeEEE-cCCCCC
Q 006979 224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS--ENGD--VYKRVCV-AGFDPT 298 (623)
Q Consensus 224 ~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~--~~~~--~~~~~~~-~~~~~~ 298 (623)
|++++++++ .++ .-..-+..++|||||++|+|+. . .+|++.-+. ++|. +...+.+ .+..
T Consensus 433 ~~~~vd~ge---~~~--~~~g~Issl~wSpDG~RiA~i~-~--------g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~-- 496 (591)
T PRK13616 433 ARTPVDASA---VAS--RVPGPISELQLSRDGVRAAMII-G--------GKVYLAVVEQTEDGQYALTNPREVGPGLG-- 496 (591)
T ss_pred EEEeccCch---hhh--ccCCCcCeEEECCCCCEEEEEE-C--------CEEEEEEEEeCCCCceeecccEEeecccC--
Confidence 999998886 443 2122367789999999999997 2 257774332 2332 2222223 2222
Q ss_pred ccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEE
Q 006979 299 IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA 339 (623)
Q Consensus 299 ~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~ 339 (623)
.......|..|++|+.... .+...+|.+++++...+.
T Consensus 497 --~~~~~l~W~~~~~L~V~~~--~~~~~v~~v~vDG~~~~~ 533 (591)
T PRK13616 497 --DTAVSLDWRTGDSLVVGRS--DPEHPVWYVNLDGSNSDA 533 (591)
T ss_pred --CccccceEecCCEEEEEec--CCCCceEEEecCCccccc
Confidence 2346789999998765544 355678999887665443
No 113
>PRK10673 acyl-CoA esterase; Provisional
Probab=98.71 E-value=6.1e-08 Score=96.26 Aligned_cols=98 Identities=15% Similarity=0.082 Sum_probs=68.3
Q ss_pred CCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCc-cchHHHHHHHHHHHHhCCCC
Q 006979 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWG-IVDVNDCCSCATFLVGSGKA 571 (623)
Q Consensus 493 ~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g-~~~~~D~~~~~~~l~~~~~~ 571 (623)
...|.||++||.+... ..|...+..|+ .+|.|+.+|+||.|..... ..+. ....+|+.+.++++
T Consensus 14 ~~~~~iv~lhG~~~~~--~~~~~~~~~l~-~~~~vi~~D~~G~G~s~~~------~~~~~~~~~~d~~~~l~~l------ 78 (255)
T PRK10673 14 HNNSPIVLVHGLFGSL--DNLGVLARDLV-NDHDIIQVDMRNHGLSPRD------PVMNYPAMAQDLLDTLDAL------ 78 (255)
T ss_pred CCCCCEEEECCCCCch--hHHHHHHHHHh-hCCeEEEECCCCCCCCCCC------CCCCHHHHHHHHHHHHHHc------
Confidence 4457899999985433 34555566665 4799999999996654321 1111 12245566655554
Q ss_pred CCCceEEEEcChHHHHHHHHh-cCCCceeEEEecc
Q 006979 572 DEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLY 605 (623)
Q Consensus 572 d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~ 605 (623)
..+++.++|||+||.+++.++ .+|++++++|...
T Consensus 79 ~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~ 113 (255)
T PRK10673 79 QIEKATFIGHSMGGKAVMALTALAPDRIDKLVAID 113 (255)
T ss_pred CCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEe
Confidence 346899999999999999998 7899999988763
No 114
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.70 E-value=6.9e-06 Score=85.50 Aligned_cols=226 Identities=15% Similarity=0.115 Sum_probs=120.4
Q ss_pred ceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceE
Q 006979 195 DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE 274 (623)
Q Consensus 195 d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~ 274 (623)
-..++|++++|+.+.+..... ..-..|.++.++++.+.+...............+|||++|+..... ...
T Consensus 41 ~l~~~~~~~~LY~~~e~~~~~---g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~-------~g~ 110 (345)
T PF10282_consen 41 WLAVSPDGRRLYVVNEGSGDS---GGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYG-------GGS 110 (345)
T ss_dssp CEEE-TTSSEEEEEETTSSTT---TEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETT-------TTE
T ss_pred eEEEEeCCCEEEEEEccccCC---CCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEcc-------CCe
Confidence 467899999998887753111 1234555555546522222222223333456799999988766422 445
Q ss_pred EEEEEecCCCceeeeE-EEc----CCCC--CccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeeccccc
Q 006979 275 LWVGYISENGDVYKRV-CVA----GFDP--TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEF 347 (623)
Q Consensus 275 L~v~d~~~~~~~~~~~-~~~----~~~~--~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~ 347 (623)
+.+++++..+.+.... +.. +..+ ..........++|||+.+|+.+...+.-.+|.++..++++.....-...
T Consensus 111 v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~- 189 (345)
T PF10282_consen 111 VSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVP- 189 (345)
T ss_dssp EEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECS-
T ss_pred EEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccc-
Confidence 8899998766533322 121 1110 0012345678999999778888744444444444444434432211111
Q ss_pred ccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecc----cCC-c----ceEee--eecCCEEEEE
Q 006979 348 SRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD----IPF-T----DIDNI--TLGNDCLFVE 416 (623)
Q Consensus 348 ~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt----~~~-~----~v~~~--~~~~~~~~~~ 416 (623)
.-.+.+.+.|.+ +++.+|+..+..+.-.++.++..++.++.+. .+. . .-..+ +++++.+|+.
T Consensus 190 ----~G~GPRh~~f~p---dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvs 262 (345)
T PF10282_consen 190 ----PGSGPRHLAFSP---DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVS 262 (345)
T ss_dssp ----TTSSEEEEEE-T---TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEE
T ss_pred ----cCCCCcEEEEcC---CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEE
Confidence 112445666664 8888999888788888888886666654332 111 0 12233 7778777776
Q ss_pred EecCCCCCeEEEEEcCCCcceee
Q 006979 417 GASGVEPSSVAKVTLDDHKLKAV 439 (623)
Q Consensus 417 ~~s~~~~~~ly~~~l~~~~~~~l 439 (623)
... ...=.+|.++.++++++.+
T Consensus 263 nr~-~~sI~vf~~d~~~g~l~~~ 284 (345)
T PF10282_consen 263 NRG-SNSISVFDLDPATGTLTLV 284 (345)
T ss_dssp ECT-TTEEEEEEECTTTTTEEEE
T ss_pred ecc-CCEEEEEEEecCCCceEEE
Confidence 544 2222344444456666544
No 115
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=98.70 E-value=1.4e-07 Score=96.07 Aligned_cols=106 Identities=10% Similarity=-0.012 Sum_probs=72.4
Q ss_pred CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575 (623)
Q Consensus 496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r 575 (623)
|.||++||.+.+ ...|...+..|+++ |.|+++|+||.|.+...-....... .....+|....+..++++-. .++
T Consensus 30 ~~vlllHG~~~~--~~~w~~~~~~L~~~-~~vi~~DlpG~G~S~~~~~~~~~~~-~~~~~~~~a~~l~~~l~~l~--~~~ 103 (294)
T PLN02824 30 PALVLVHGFGGN--ADHWRKNTPVLAKS-HRVYAIDLLGYGYSDKPNPRSAPPN-SFYTFETWGEQLNDFCSDVV--GDP 103 (294)
T ss_pred CeEEEECCCCCC--hhHHHHHHHHHHhC-CeEEEEcCCCCCCCCCCcccccccc-ccCCHHHHHHHHHHHHHHhc--CCC
Confidence 678999998544 34677778888877 6999999999776543110000000 12334554444444433211 378
Q ss_pred eEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979 576 LCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV 607 (623)
Q Consensus 576 v~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~ 607 (623)
+.++|||+||++++.++ .+|++++++|...+.
T Consensus 104 ~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~ 136 (294)
T PLN02824 104 AFVICNSVGGVVGLQAAVDAPELVRGVMLINIS 136 (294)
T ss_pred eEEEEeCHHHHHHHHHHHhChhheeEEEEECCC
Confidence 99999999999999988 889999999998764
No 116
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.69 E-value=5.8e-06 Score=83.38 Aligned_cols=225 Identities=11% Similarity=0.067 Sum_probs=127.0
Q ss_pred CCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 006979 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (623)
Q Consensus 154 ~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~ 233 (623)
.+.++|++-..++|+++++.++ ..+..... ....+....+.+|.. ++++ ..+++++++.+.
T Consensus 36 ~~~L~w~DI~~~~i~r~~~~~g--~~~~~~~p----~~~~~~~~~d~~g~L--v~~~----------~g~~~~~~~~~~- 96 (307)
T COG3386 36 RGALLWVDILGGRIHRLDPETG--KKRVFPSP----GGFSSGALIDAGGRL--IACE----------HGVRLLDPDTGG- 96 (307)
T ss_pred CCEEEEEeCCCCeEEEecCCcC--ceEEEECC----CCcccceeecCCCeE--EEEc----------cccEEEeccCCc-
Confidence 3468999988899999999876 45554432 233334446666643 3333 336667766554
Q ss_pred ccc-eecccCC-----CcccceeeCCCCCEEEEEEec-----CCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCcccc
Q 006979 234 QEP-KVLVSGS-----DFYAFPRMDPRGERMAWIEWH-----HPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 302 (623)
Q Consensus 234 ~~~-~~l~~~~-----~~~~~p~wSPDG~~la~~~~~-----~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~ 302 (623)
. +.++... ...+.-...|||+ ++|.... .+. .-....||+++..+. ..+++.+.- ..
T Consensus 97 --~~t~~~~~~~~~~~~r~ND~~v~pdG~-~wfgt~~~~~~~~~~-~~~~G~lyr~~p~g~----~~~l~~~~~----~~ 164 (307)
T COG3386 97 --KITLLAEPEDGLPLNRPNDGVVDPDGR-IWFGDMGYFDLGKSE-ERPTGSLYRVDPDGG----VVRLLDDDL----TI 164 (307)
T ss_pred --eeEEeccccCCCCcCCCCceeEcCCCC-EEEeCCCccccCccc-cCCcceEEEEcCCCC----EEEeecCcE----Ee
Confidence 3 3333211 1234456899998 6666544 111 112447888886433 444544422 45
Q ss_pred CcCceeCCCCcEEEEEeCCCCeeeEEEEecCC--Ce---EEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEE
Q 006979 303 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESN--NE---VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ 377 (623)
Q Consensus 303 ~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~--~~---~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~ 377 (623)
...++|||||+.+|+++. ...+|++++.+. +. .+.......+-+.|. .+.. |.+..+|....
T Consensus 165 ~NGla~SpDg~tly~aDT--~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PD------G~~v-----DadG~lw~~a~ 231 (307)
T COG3386 165 PNGLAFSPDGKTLYVADT--PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPD------GMAV-----DADGNLWVAAV 231 (307)
T ss_pred cCceEECCCCCEEEEEeC--CCCeEEEEecCcccCccCCcceEEEccCCCCCCC------ceEE-----eCCCCEEEecc
Confidence 578999999996666775 455788776642 11 111111111223332 2233 33333443434
Q ss_pred CCeEEEEEEeCCCCceeecccCCcceEee---eecCCEEEEEEecCCC
Q 006979 378 NGRSYLGILDDFGHSLSLLDIPFTDIDNI---TLGNDCLFVEGASGVE 422 (623)
Q Consensus 378 ~g~~~L~~~d~~~~~~~~lt~~~~~v~~~---~~~~~~~~~~~~s~~~ 422 (623)
.+...|.+++++++.+..+..|....... .++.+++|++++....
T Consensus 232 ~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~~~ 279 (307)
T COG3386 232 WGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARSGM 279 (307)
T ss_pred cCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecCCCC
Confidence 44467888999977777777774433322 5567888888765533
No 117
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=98.69 E-value=1.3e-07 Score=95.10 Aligned_cols=102 Identities=15% Similarity=0.038 Sum_probs=70.4
Q ss_pred CCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCC
Q 006979 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (623)
Q Consensus 495 ~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~ 574 (623)
.|.||++||.+. ....|....+.+++ +|.|+.+|+||.|...... . .....++..+.+..++++ .+.+
T Consensus 28 ~~~vv~~hG~~~--~~~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~-----~--~~~~~~~~~~~l~~~i~~--~~~~ 95 (278)
T TIGR03056 28 GPLLLLLHGTGA--STHSWRDLMPPLAR-SFRVVAPDLPGHGFTRAPF-----R--FRFTLPSMAEDLSALCAA--EGLS 95 (278)
T ss_pred CCeEEEEcCCCC--CHHHHHHHHHHHhh-CcEEEeecCCCCCCCCCcc-----c--cCCCHHHHHHHHHHHHHH--cCCC
Confidence 478999999843 33345566666654 6999999999965432211 0 122345555555555544 2236
Q ss_pred ceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979 575 RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608 (623)
Q Consensus 575 rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~ 608 (623)
++.|+|||+||.+++.++ .+|++++++|...+..
T Consensus 96 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~ 130 (278)
T TIGR03056 96 PDGVIGHSAGAAIALRLALDGPVTPRMVVGINAAL 130 (278)
T ss_pred CceEEEECccHHHHHHHHHhCCcccceEEEEcCcc
Confidence 889999999999999999 7898888888877643
No 118
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=98.68 E-value=5.6e-08 Score=91.79 Aligned_cols=116 Identities=19% Similarity=0.186 Sum_probs=89.0
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccch
Q 006979 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVD 554 (623)
Q Consensus 475 i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~ 554 (623)
.+..++.|.. .+.+|+|+++||. ......|.-..+..+++||+|++|+..... ..-+..+
T Consensus 33 kpLlI~tP~~-------~G~yPVilF~HG~--~l~ns~Ys~lL~HIASHGfIVVAPQl~~~~-----------~p~~~~E 92 (307)
T PF07224_consen 33 KPLLIVTPSE-------AGTYPVILFLHGF--NLYNSFYSQLLAHIASHGFIVVAPQLYTLF-----------PPDGQDE 92 (307)
T ss_pred CCeEEecCCc-------CCCccEEEEeech--hhhhHHHHHHHHHHhhcCeEEEechhhccc-----------CCCchHH
Confidence 4556777876 7889999999998 344445566788889999999999976421 1234567
Q ss_pred HHHHHHHHHHHHhC--------CCCCCCceEEEEcChHHHHHHHHh-cC--CCceeEEEecccCCCH
Q 006979 555 VNDCCSCATFLVGS--------GKADEKRLCITGGSAGGYTTLAAL-AF--RDTFKAGASLYGVSIP 610 (623)
Q Consensus 555 ~~D~~~~~~~l~~~--------~~~d~~rv~i~G~S~GG~~~~~~~-~~--~~~f~a~v~~~g~~d~ 610 (623)
+++..++++||.+. -..+.++++++|||.||.++.+++ .+ .-.|.|.|-+.|+.-.
T Consensus 93 i~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G~ 159 (307)
T PF07224_consen 93 IKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAGT 159 (307)
T ss_pred HHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCCC
Confidence 88999999999752 125778999999999999999888 55 3468999988887644
No 119
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=98.67 E-value=5.2e-08 Score=93.85 Aligned_cols=113 Identities=19% Similarity=0.299 Sum_probs=78.8
Q ss_pred CCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc--------------hhHHHh--hccC---Cc-
Q 006979 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG--------------REFRER--LLGR---WG- 551 (623)
Q Consensus 492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g--------------~~~~~~--~~~~---~g- 551 (623)
+.++|+||+.||- +..+.-|+.....+|++||+|+++.+|-..-.- +.|++- ...+ .-
T Consensus 115 ~~k~PvvvFSHGL--ggsRt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ekef~i 192 (399)
T KOG3847|consen 115 NDKYPVVVFSHGL--GGSRTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKEFHI 192 (399)
T ss_pred CCCccEEEEeccc--ccchhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCceeEEe
Confidence 7899999999998 556667888899999999999999999753211 111110 0000 00
Q ss_pred -----cchHHHHHHHHHHHHh---------------------CCCCCCCceEEEEcChHHHHHHHHhcCCCceeEEEecc
Q 006979 552 -----IVDVNDCCSCATFLVG---------------------SGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLY 605 (623)
Q Consensus 552 -----~~~~~D~~~~~~~l~~---------------------~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v~~~ 605 (623)
..-++.|..|+.-|.+ ++.+|..+++|+|||+||.+++........|+|+|+..
T Consensus 193 rNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~t~FrcaI~lD 272 (399)
T KOG3847|consen 193 RNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSHTDFRCAIALD 272 (399)
T ss_pred eCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhccccceeeeeeee
Confidence 0113455555554432 34578899999999999999999886556799999875
Q ss_pred c
Q 006979 606 G 606 (623)
Q Consensus 606 g 606 (623)
+
T Consensus 273 ~ 273 (399)
T KOG3847|consen 273 A 273 (399)
T ss_pred e
Confidence 5
No 120
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=98.67 E-value=1.8e-07 Score=95.83 Aligned_cols=101 Identities=17% Similarity=0.062 Sum_probs=67.9
Q ss_pred CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575 (623)
Q Consensus 496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r 575 (623)
+.||++||++..... ......+...+|.|+.+|+||.|..... ........+|+.+.+..+.++- +.++
T Consensus 28 ~~lvllHG~~~~~~~---~~~~~~~~~~~~~vi~~D~~G~G~S~~~------~~~~~~~~~~~~~dl~~l~~~l--~~~~ 96 (306)
T TIGR01249 28 KPVVFLHGGPGSGTD---PGCRRFFDPETYRIVLFDQRGCGKSTPH------ACLEENTTWDLVADIEKLREKL--GIKN 96 (306)
T ss_pred CEEEEECCCCCCCCC---HHHHhccCccCCEEEEECCCCCCCCCCC------CCcccCCHHHHHHHHHHHHHHc--CCCC
Confidence 457889998655332 1233445567999999999996543211 0011123456666666665542 3468
Q ss_pred eEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979 576 LCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV 607 (623)
Q Consensus 576 v~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~ 607 (623)
+.++|+||||++++.++ .+|+.++++|...+.
T Consensus 97 ~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~ 129 (306)
T TIGR01249 97 WLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIF 129 (306)
T ss_pred EEEEEECHHHHHHHHHHHHChHhhhhheeeccc
Confidence 99999999999999998 889988888876543
No 121
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=98.66 E-value=1.2e-07 Score=100.66 Aligned_cols=103 Identities=16% Similarity=0.140 Sum_probs=68.0
Q ss_pred CCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCcc-chHH-HHHHH-HHHHHhCCC
Q 006979 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVN-DCCSC-ATFLVGSGK 570 (623)
Q Consensus 494 ~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~-~~~~-D~~~~-~~~l~~~~~ 570 (623)
..|.||++||.+... ..|...+..|++ +|.|+.+|+||.|...+.. ..... .+.+ .+.+. .+|+.+.
T Consensus 104 ~~p~vvllHG~~~~~--~~~~~~~~~L~~-~~~vi~~D~rG~G~S~~~~-----~~~~~~~~~~~~~~~~i~~~~~~l-- 173 (402)
T PLN02894 104 DAPTLVMVHGYGASQ--GFFFRNFDALAS-RFRVIAIDQLGWGGSSRPD-----FTCKSTEETEAWFIDSFEEWRKAK-- 173 (402)
T ss_pred CCCEEEEECCCCcch--hHHHHHHHHHHh-CCEEEEECCCCCCCCCCCC-----cccccHHHHHHHHHHHHHHHHHHc--
Confidence 347899999985432 234445566665 5999999999977654321 01110 1112 22323 3344333
Q ss_pred CCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979 571 ADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV 607 (623)
Q Consensus 571 ~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~ 607 (623)
+.+++.++|||+||++++.++ .+|+.++++|...|.
T Consensus 174 -~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~ 210 (402)
T PLN02894 174 -NLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPA 210 (402)
T ss_pred -CCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCc
Confidence 346899999999999999888 889999998888664
No 122
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=98.66 E-value=2.2e-07 Score=98.06 Aligned_cols=135 Identities=19% Similarity=0.186 Sum_probs=87.6
Q ss_pred cEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCc----eEEEEECCCCCC
Q 006979 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRG----WAFVDVNYGGST 536 (623)
Q Consensus 461 ~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G----~~v~~~d~rGs~ 536 (623)
.+.+.+.+..-|.....++|.|.+ |. .+++|+|+++||..+..... .......+.++| .+++.+|.....
T Consensus 180 ~~~~~~~S~~Lg~~r~v~VY~P~~--y~---~~~~PvlyllDG~~w~~~~~-~~~~ld~li~~g~i~P~ivV~id~~~~~ 253 (411)
T PRK10439 180 AKEIIWKSERLGNSRRVWIYTTGD--AA---PEERPLAILLDGQFWAESMP-VWPALDSLTHRGQLPPAVYLLIDAIDTT 253 (411)
T ss_pred eEEEEEEccccCCceEEEEEECCC--CC---CCCCCEEEEEECHHhhhcCC-HHHHHHHHHHcCCCCceEEEEECCCCcc
Confidence 355666664356778889999987 43 35799999999986543322 223344566666 456788753221
Q ss_pred CCchhHHHhhccCCccchHHH-H-HHHHHHHHhCCC--CCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979 537 GYGREFRERLLGRWGIVDVND-C-CSCATFLVGSGK--ADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608 (623)
Q Consensus 537 ~~g~~~~~~~~~~~g~~~~~D-~-~~~~~~l~~~~~--~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~ 608 (623)
....++. ....+.+ + .+.+.++.++.. .|+++.+|.|.||||+.++.++ .+|++|.++++++|-.
T Consensus 254 ~R~~el~-------~~~~f~~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ 323 (411)
T PRK10439 254 HRSQELP-------CNADFWLAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSF 323 (411)
T ss_pred cccccCC-------chHHHHHHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccce
Confidence 1111110 0111222 2 244456655533 5889999999999999999998 9999999999999853
No 123
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=98.65 E-value=1.9e-07 Score=99.84 Aligned_cols=120 Identities=12% Similarity=0.056 Sum_probs=79.3
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCH-HhHHHH---cCceEEEEECCCCCCCCchhHHHhh
Q 006979 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-SIQYWT---SRGWAFVDVNYGGSTGYGREFRERL 546 (623)
Q Consensus 471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~-~~~~~a---~~G~~v~~~d~rGs~~~g~~~~~~~ 546 (623)
++..++.....|.+ +...|.||++||.+... ..|.. ....|+ +++|.|+++|+||.|.+... .
T Consensus 184 ~~~~l~~~~~gp~~-------~~~k~~VVLlHG~~~s~--~~W~~~~~~~L~~~~~~~yrVia~Dl~G~G~S~~p----~ 250 (481)
T PLN03087 184 SNESLFVHVQQPKD-------NKAKEDVLFIHGFISSS--AFWTETLFPNFSDAAKSTYRLFAVDLLGFGRSPKP----A 250 (481)
T ss_pred CCeEEEEEEecCCC-------CCCCCeEEEECCCCccH--HHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCcCC----C
Confidence 56778877777764 22236789999995433 23332 224444 47999999999996654321 0
Q ss_pred ccCCccchHHHHHHHH-HHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979 547 LGRWGIVDVNDCCSCA-TFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608 (623)
Q Consensus 547 ~~~~g~~~~~D~~~~~-~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~ 608 (623)
... ...++..+.+ +.+++. .+.+++.++||||||++++.++ .+|++++++|...+..
T Consensus 251 ~~~---ytl~~~a~~l~~~ll~~--lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~ 309 (481)
T PLN03087 251 DSL---YTLREHLEMIERSVLER--YKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPY 309 (481)
T ss_pred CCc---CCHHHHHHHHHHHHHHH--cCCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCc
Confidence 111 2344444444 234443 2346899999999999999988 8999999999887643
No 124
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=98.65 E-value=1.2e-07 Score=95.44 Aligned_cols=115 Identities=14% Similarity=0.063 Sum_probs=76.0
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCC
Q 006979 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (623)
Q Consensus 471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~ 550 (623)
+|.+++.+.... +...|.||++||.+.. ...|......|.+ +|.|+++|+||.|.+... ...+
T Consensus 10 ~~~~~~~~~~~~---------~~~~~plvllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~~-----~~~~ 72 (276)
T TIGR02240 10 DGQSIRTAVRPG---------KEGLTPLLIFNGIGAN--LELVFPFIEALDP-DLEVIAFDVPGVGGSSTP-----RHPY 72 (276)
T ss_pred CCcEEEEEEecC---------CCCCCcEEEEeCCCcc--hHHHHHHHHHhcc-CceEEEECCCCCCCCCCC-----CCcC
Confidence 577777655421 1122467889997433 3356666777655 699999999996654321 1111
Q ss_pred cc-chHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979 551 GI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608 (623)
Q Consensus 551 g~-~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~ 608 (623)
.. ...+|+.+.++++ +.+++.++|||+||++++.++ .+|+++++.|..++..
T Consensus 73 ~~~~~~~~~~~~i~~l------~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~ 126 (276)
T TIGR02240 73 RFPGLAKLAARMLDYL------DYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAA 126 (276)
T ss_pred cHHHHHHHHHHHHHHh------CcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCC
Confidence 11 1134444444443 346899999999999999999 7899999999988764
No 125
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.63 E-value=3.4e-06 Score=88.00 Aligned_cols=252 Identities=12% Similarity=0.131 Sum_probs=123.5
Q ss_pred EEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 006979 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP 236 (623)
Q Consensus 157 l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~ 236 (623)
++++...++.|.++|.++. .....+..+ ........++|||++++....+ +.|.++|+.+++. +
T Consensus 8 ~~V~~~~~~~v~viD~~t~-~~~~~i~~~----~~~h~~~~~s~Dgr~~yv~~rd---------g~vsviD~~~~~~--v 71 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATN-KVVARIPTG----GAPHAGLKFSPDGRYLYVANRD---------GTVSVIDLATGKV--V 71 (369)
T ss_dssp EEEEEGGGTEEEEEETTT--SEEEEEE-S----TTEEEEEE-TT-SSEEEEEETT---------SEEEEEETTSSSE--E
T ss_pred EEEEecCCCEEEEEECCCC-eEEEEEcCC----CCceeEEEecCCCCEEEEEcCC---------CeEEEEECCcccE--E
Confidence 4455556788999998875 223445433 1224456789999987665322 5699999999873 4
Q ss_pred eecccCCCcccceeeCCCCCEEEEEEecCCCC-------------------C------------------------CCce
Q 006979 237 KVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM-------------------P------------------------WDKA 273 (623)
Q Consensus 237 ~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~-------------------p------------------------~~~~ 273 (623)
..+..+.. ..+.++|||||+|+...+..+.+ + .+..
T Consensus 72 ~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~ 150 (369)
T PF02239_consen 72 ATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTG 150 (369)
T ss_dssp EEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTT
T ss_pred EEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCC
Confidence 44544433 34577999999987665332210 0 0112
Q ss_pred EEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecc-cc------
Q 006979 274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLD-AE------ 346 (623)
Q Consensus 274 ~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~-~~------ 346 (623)
++|++|......+....+-. . ..+.+..|+|||+.++++.. +...|..+|..+++...+.... ..
T Consensus 151 ~I~vVdy~d~~~~~~~~i~~--g----~~~~D~~~dpdgry~~va~~--~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~ 222 (369)
T PF02239_consen 151 EIWVVDYSDPKNLKVTTIKV--G----RFPHDGGFDPDGRYFLVAAN--GSNKIAVIDTKTGKLVALIDTGKKPHPGPGA 222 (369)
T ss_dssp EEEEEETTTSSCEEEEEEE--------TTEEEEEE-TTSSEEEEEEG--GGTEEEEEETTTTEEEEEEE-SSSBEETTEE
T ss_pred eEEEEEeccccccceeeecc--c----ccccccccCcccceeeeccc--ccceeEEEeeccceEEEEeeccccccccccc
Confidence 22333322211100011111 1 23456789999995555433 2236667777666544332110 00
Q ss_pred -----cccccccccCcce-------------------------------eEEeecCCCCEEEEEE-EECCeEEEEEEeCC
Q 006979 347 -----FSRPLWVFGINSY-------------------------------EIIQSHGEKNLIACSY-RQNGRSYLGILDDF 389 (623)
Q Consensus 347 -----~~~~~w~~~~~~~-------------------------------~~l~~s~~~~~l~~~~-~~~g~~~L~~~d~~ 389 (623)
..++.|....... .|+..+|+++++++.. .......|.++|.+
T Consensus 223 ~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~ 302 (369)
T PF02239_consen 223 NFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKK 302 (369)
T ss_dssp EEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECC
T ss_pred cccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECc
Confidence 0111232111100 1222366777777651 12336678899987
Q ss_pred CCce-eecccCCc--ce-EeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979 390 GHSL-SLLDIPFT--DI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (623)
Q Consensus 390 ~~~~-~~lt~~~~--~v-~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~ 435 (623)
+-+. ..+..... .+ -.++.+|+++++....... +|..+|.++.+
T Consensus 303 tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~--~i~v~D~~Tl~ 350 (369)
T PF02239_consen 303 TLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNG--AIVVYDAKTLK 350 (369)
T ss_dssp GTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TT--EEEEEETTTTE
T ss_pred CcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCC--EEEEEECCCcE
Confidence 7543 44543222 22 2348899999987764443 89999987765
No 126
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=98.63 E-value=1.4e-07 Score=94.52 Aligned_cols=111 Identities=14% Similarity=0.097 Sum_probs=76.0
Q ss_pred CCCCEEEEecCCCCCcccCcCC-HHhHHH-HcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCC
Q 006979 493 EKPPLLVKSHGGPTSEARGILN-LSIQYW-TSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 570 (623)
Q Consensus 493 ~~~Pliv~~hGg~~~~~~~~~~-~~~~~~-a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~ 570 (623)
...|++|++||...... ..+. .....+ ...+|.|+.+|+++... ..|..... +. ....+++...+++|.++..
T Consensus 34 ~~~p~vilIHG~~~~~~-~~~~~~l~~~ll~~~~~nVi~vD~~~~~~--~~y~~a~~-~~-~~v~~~la~~l~~L~~~~g 108 (275)
T cd00707 34 PSRPTRFIIHGWTSSGE-ESWISDLRKAYLSRGDYNVIVVDWGRGAN--PNYPQAVN-NT-RVVGAELAKFLDFLVDNTG 108 (275)
T ss_pred CCCCcEEEEcCCCCCCC-CcHHHHHHHHHHhcCCCEEEEEECccccc--cChHHHHH-hH-HHHHHHHHHHHHHHHHhcC
Confidence 34588999999854331 2222 334434 44689999999997522 12221111 01 1123577888888888755
Q ss_pred CCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979 571 ADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608 (623)
Q Consensus 571 ~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~ 608 (623)
++.++|.++|||+||++++.++ .++++++.++.+.|..
T Consensus 109 ~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~ 147 (275)
T cd00707 109 LSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAG 147 (275)
T ss_pred CChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCc
Confidence 6789999999999999999999 7788999999887753
No 127
>KOG3101 consensus Esterase D [General function prediction only]
Probab=98.61 E-value=8.5e-08 Score=87.21 Aligned_cols=133 Identities=17% Similarity=0.170 Sum_probs=83.5
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCC--HHhHHH-HcCceEEEEEC--CCCCCCCchh------
Q 006979 473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN--LSIQYW-TSRGWAFVDVN--YGGSTGYGRE------ 541 (623)
Q Consensus 473 ~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~--~~~~~~-a~~G~~v~~~d--~rGs~~~g~~------ 541 (623)
..+..-+|.|... +.+++.|++.++-|-. .....|. ...|.. .++|++|+.|| .||..--|.+
T Consensus 26 c~Mtf~vylPp~a----~~~k~~P~lf~LSGLT--CT~~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG 99 (283)
T KOG3101|consen 26 CSMTFGVYLPPDA----PRGKRCPVLFYLSGLT--CTHENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFG 99 (283)
T ss_pred cceEEEEecCCCc----ccCCcCceEEEecCCc--ccchhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCccccccc
Confidence 3444455666442 2377799999998873 2222222 234444 46899999998 6764321111
Q ss_pred -----HHHhhccCCcc-c-hHHHHHHHHHHHHh--CCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHH
Q 006979 542 -----FRERLLGRWGI-V-DVNDCCSCATFLVG--SGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPV 611 (623)
Q Consensus 542 -----~~~~~~~~~g~-~-~~~D~~~~~~~l~~--~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~ 611 (623)
|.++..+.|.. . +++-+..-+-.++. .-.+|+.|++|+||||||+-++... +.+.+++.+.+++||+|..
T Consensus 100 ~GAGFYvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP~ 179 (283)
T KOG3101|consen 100 QGAGFYVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNPI 179 (283)
T ss_pred CCceeEEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCcc
Confidence 23333344433 1 12222222222332 2248999999999999999999887 8899999999999999864
No 128
>PRK03592 haloalkane dehalogenase; Provisional
Probab=98.60 E-value=5.8e-07 Score=91.52 Aligned_cols=99 Identities=14% Similarity=0.091 Sum_probs=69.8
Q ss_pred CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575 (623)
Q Consensus 496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r 575 (623)
|.||++||.+.+ ...|...++.|++++ .|+++|.||.|.+... ...+ ..++..+.+..++++ .+.++
T Consensus 28 ~~vvllHG~~~~--~~~w~~~~~~L~~~~-~via~D~~G~G~S~~~-----~~~~---~~~~~a~dl~~ll~~--l~~~~ 94 (295)
T PRK03592 28 DPIVFLHGNPTS--SYLWRNIIPHLAGLG-RCLAPDLIGMGASDKP-----DIDY---TFADHARYLDAWFDA--LGLDD 94 (295)
T ss_pred CEEEEECCCCCC--HHHHHHHHHHHhhCC-EEEEEcCCCCCCCCCC-----CCCC---CHHHHHHHHHHHHHH--hCCCC
Confidence 578889998543 345667788888886 9999999997654332 1111 233333333333332 12368
Q ss_pred eEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979 576 LCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV 607 (623)
Q Consensus 576 v~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~ 607 (623)
+.++|||+||.+++.++ .+|++++++|...++
T Consensus 95 ~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~ 127 (295)
T PRK03592 95 VVLVGHDWGSALGFDWAARHPDRVRGIAFMEAI 127 (295)
T ss_pred eEEEEECHHHHHHHHHHHhChhheeEEEEECCC
Confidence 99999999999999999 899999999988863
No 129
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.59 E-value=4.7e-05 Score=75.39 Aligned_cols=202 Identities=13% Similarity=0.083 Sum_probs=112.8
Q ss_pred CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCCC
Q 006979 88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQ 165 (623)
Q Consensus 88 ~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~ 165 (623)
...+..+.++| ++.++... . +|...+|..... +....+.. +........+.++ ..++....++
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~-~---~g~i~i~~~~~~---~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~~~ 73 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGS-G---DGTIKVWDLETG---ELLRTLKG--------HTGPVRDVAASADGTYLASGSSDK 73 (289)
T ss_pred CCCEEEEEEcCCCCEEEEee-c---CcEEEEEEeeCC---CcEEEEec--------CCcceeEEEECCCCCEEEEEcCCC
Confidence 44567888888 45444332 2 467667765432 21111111 1111223444444 3445555678
Q ss_pred cEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCc
Q 006979 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF 245 (623)
Q Consensus 166 ~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~ 245 (623)
.|+++++.++ .....+... ........|+|+++.++....+ ..|.++|+.+++. ...+......
T Consensus 74 ~i~i~~~~~~-~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~--~~~~~~~~~~ 137 (289)
T cd00200 74 TIRLWDLETG-ECVRTLTGH----TSYVSSVAFSPDGRILSSSSRD---------KTIKVWDVETGKC--LTTLRGHTDW 137 (289)
T ss_pred eEEEEEcCcc-cceEEEecc----CCcEEEEEEcCCCCEEEEecCC---------CeEEEEECCCcEE--EEEeccCCCc
Confidence 8999999864 233444432 2245667899997766554322 5688899886541 2333333344
Q ss_pred ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCee
Q 006979 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFW 325 (623)
Q Consensus 246 ~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~ 325 (623)
.....|+|+++.|+... . ...|+++|+..+. ....+.... ..+....|+++++.+++... ++
T Consensus 138 i~~~~~~~~~~~l~~~~-~-------~~~i~i~d~~~~~---~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~-~~-- 199 (289)
T cd00200 138 VNSVAFSPDGTFVASSS-Q-------DGTIKLWDLRTGK---CVATLTGHT----GEVNSVAFSPDGEKLLSSSS-DG-- 199 (289)
T ss_pred EEEEEEcCcCCEEEEEc-C-------CCcEEEEEccccc---cceeEecCc----cccceEEECCCcCEEEEecC-CC--
Confidence 56678999988766543 1 2248888887553 222333332 45678999999974434333 34
Q ss_pred eEEEEecCCCeEE
Q 006979 326 NLHKWIESNNEVL 338 (623)
Q Consensus 326 ~L~~~d~~~~~~~ 338 (623)
.+..+|...++..
T Consensus 200 ~i~i~d~~~~~~~ 212 (289)
T cd00200 200 TIKLWDLSTGKCL 212 (289)
T ss_pred cEEEEECCCCcee
Confidence 4666676655433
No 130
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=98.58 E-value=2e-07 Score=97.45 Aligned_cols=129 Identities=15% Similarity=0.153 Sum_probs=79.7
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC---------cCCHHh---HHHHcCceEEEEECCCC--CC
Q 006979 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG---------ILNLSI---QYWTSRGWAFVDVNYGG--ST 536 (623)
Q Consensus 471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~---------~~~~~~---~~~a~~G~~v~~~d~rG--s~ 536 (623)
+|..++...+-+.+ ....|.||++||-..+.... .|.... ..+...+|.|+++|+|| .|
T Consensus 14 ~~~~~~y~~~g~~~-------~~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g 86 (351)
T TIGR01392 14 SDVRVAYETYGTLN-------AERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYG 86 (351)
T ss_pred CCceEEEEeccccC-------CCCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCC
Confidence 45667665554432 12236899999975543221 122222 25557899999999999 23
Q ss_pred CCchh-HHHh---hccCCccchHHHHHHHHHHHHhCCCCCCCc-eEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979 537 GYGRE-FRER---LLGRWGIVDVNDCCSCATFLVGSGKADEKR-LCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608 (623)
Q Consensus 537 ~~g~~-~~~~---~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r-v~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~ 608 (623)
..+.. +... ...+.....++|..+.+..++++- ..++ +.++||||||.+++.++ .+|++++++|...+..
T Consensus 87 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 162 (351)
T TIGR01392 87 STGPSSINPGGRPYGSDFPLITIRDDVKAQKLLLDHL--GIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSA 162 (351)
T ss_pred CCCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCC
Confidence 22221 0000 000111244667666665555442 2357 99999999999999888 8999999999887754
No 131
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=98.55 E-value=5.6e-07 Score=94.78 Aligned_cols=101 Identities=12% Similarity=0.110 Sum_probs=73.4
Q ss_pred CCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCC
Q 006979 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (623)
Q Consensus 495 ~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~ 574 (623)
.|.||++||.+. ....|......|.. +|.|+.+|+||.|..... ....+.+++.+.+..+.++ ++..
T Consensus 131 ~~~vl~~HG~~~--~~~~~~~~~~~l~~-~~~v~~~d~~g~G~s~~~--------~~~~~~~~~~~~~~~~~~~--~~~~ 197 (371)
T PRK14875 131 GTPVVLIHGFGG--DLNNWLFNHAALAA-GRPVIALDLPGHGASSKA--------VGAGSLDELAAAVLAFLDA--LGIE 197 (371)
T ss_pred CCeEEEECCCCC--ccchHHHHHHHHhc-CCEEEEEcCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHh--cCCc
Confidence 478999998743 33345555666654 599999999997654321 1223466776666666654 4567
Q ss_pred ceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979 575 RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608 (623)
Q Consensus 575 rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~ 608 (623)
++.++|||+||++++.++ .+|+.++++|..+|..
T Consensus 198 ~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~~ 232 (371)
T PRK14875 198 RAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAG 232 (371)
T ss_pred cEEEEeechHHHHHHHHHHhCchheeEEEEECcCC
Confidence 999999999999999888 7888999999887753
No 132
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=98.55 E-value=5.6e-07 Score=88.82 Aligned_cols=105 Identities=17% Similarity=0.136 Sum_probs=77.1
Q ss_pred CCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCcc-chHHHHHHHHHHHHhCCCCC
Q 006979 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGKAD 572 (623)
Q Consensus 494 ~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~-~~~~D~~~~~~~l~~~~~~d 572 (623)
..|+|+++||.|..-. .|+.....|+++||.|+++|+||.|..... .....+-. ....|+.+.++.|-
T Consensus 43 ~gP~illlHGfPe~wy--swr~q~~~la~~~~rviA~DlrGyG~Sd~P---~~~~~Yt~~~l~~di~~lld~Lg------ 111 (322)
T KOG4178|consen 43 DGPIVLLLHGFPESWY--SWRHQIPGLASRGYRVIAPDLRGYGFSDAP---PHISEYTIDELVGDIVALLDHLG------ 111 (322)
T ss_pred CCCEEEEEccCCccch--hhhhhhhhhhhcceEEEecCCCCCCCCCCC---CCcceeeHHHHHHHHHHHHHHhc------
Confidence 4599999999986544 556677789999999999999995543221 11111211 22456666666664
Q ss_pred CCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979 573 EKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI 609 (623)
Q Consensus 573 ~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d 609 (623)
-+|+.+.||+||+.++..++ .+|++.++.|+.....-
T Consensus 112 ~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~ 149 (322)
T KOG4178|consen 112 LKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFP 149 (322)
T ss_pred cceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCC
Confidence 47999999999999999998 89999999998866543
No 133
>PRK03204 haloalkane dehalogenase; Provisional
Probab=98.54 E-value=2.6e-07 Score=93.62 Aligned_cols=100 Identities=17% Similarity=0.083 Sum_probs=72.5
Q ss_pred CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575 (623)
Q Consensus 496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r 575 (623)
|.||++||.+. ....|......|.+ +|.|+++|+||.|.....- . .....+++.+.+..++++ .+.++
T Consensus 35 ~~iv~lHG~~~--~~~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~------~-~~~~~~~~~~~~~~~~~~--~~~~~ 102 (286)
T PRK03204 35 PPILLCHGNPT--WSFLYRDIIVALRD-RFRCVAPDYLGFGLSERPS------G-FGYQIDEHARVIGEFVDH--LGLDR 102 (286)
T ss_pred CEEEEECCCCc--cHHHHHHHHHHHhC-CcEEEEECCCCCCCCCCCC------c-cccCHHHHHHHHHHHHHH--hCCCC
Confidence 67899999853 22345555666654 6999999999976543310 0 113467777777777765 24478
Q ss_pred eEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979 576 LCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV 607 (623)
Q Consensus 576 v~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~ 607 (623)
+.++|||+||.+++.++ .+|++++++|...+.
T Consensus 103 ~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~ 135 (286)
T PRK03204 103 YLSMGQDWGGPISMAVAVERADRVRGVVLGNTW 135 (286)
T ss_pred EEEEEECccHHHHHHHHHhChhheeEEEEECcc
Confidence 99999999999999888 889999999876553
No 134
>PRK10349 carboxylesterase BioH; Provisional
Probab=98.54 E-value=3.7e-07 Score=90.80 Aligned_cols=95 Identities=15% Similarity=0.114 Sum_probs=67.3
Q ss_pred CCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCC
Q 006979 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (623)
Q Consensus 494 ~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~ 573 (623)
..|.||++||.+ .....|......|.+. |.|+.+|+||.|.... +.....+++.. .+.+. ..
T Consensus 12 g~~~ivllHG~~--~~~~~w~~~~~~L~~~-~~vi~~Dl~G~G~S~~---------~~~~~~~~~~~---~l~~~---~~ 73 (256)
T PRK10349 12 GNVHLVLLHGWG--LNAEVWRCIDEELSSH-FTLHLVDLPGFGRSRG---------FGALSLADMAE---AVLQQ---AP 73 (256)
T ss_pred CCCeEEEECCCC--CChhHHHHHHHHHhcC-CEEEEecCCCCCCCCC---------CCCCCHHHHHH---HHHhc---CC
Confidence 345689999974 3334666777778654 9999999999665421 11123344433 33333 24
Q ss_pred CceEEEEcChHHHHHHHHh-cCCCceeEEEeccc
Q 006979 574 KRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYG 606 (623)
Q Consensus 574 ~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g 606 (623)
+++.++|||+||++++.++ .+|++++++|...+
T Consensus 74 ~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~ 107 (256)
T PRK10349 74 DKAIWLGWSLGGLVASQIALTHPERVQALVTVAS 107 (256)
T ss_pred CCeEEEEECHHHHHHHHHHHhChHhhheEEEecC
Confidence 7999999999999999998 78999999987765
No 135
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=98.53 E-value=1.4e-06 Score=88.95 Aligned_cols=140 Identities=14% Similarity=0.050 Sum_probs=94.3
Q ss_pred EEEEeecCCCCeEEEE-EEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCch
Q 006979 462 ELIEFPTEVPGQKAYA-YYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR 540 (623)
Q Consensus 462 ~~i~~~~~~dg~~i~~-~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~ 540 (623)
+..-++.+ ||..+.. |+..|....+ ++....|+||++||-.++..............++||.|+++|.||.+|..-
T Consensus 94 ~Reii~~~-DGG~~~lDW~~~~~~~~~--~~~~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~L 170 (409)
T KOG1838|consen 94 TREIIKTS-DGGTVTLDWVENPDSRCR--TDDGTDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKL 170 (409)
T ss_pred eeEEEEeC-CCCEEEEeeccCcccccC--CCCCCCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCcc
Confidence 34445555 6766665 4444443111 123567999999998766665555566777788999999999999766432
Q ss_pred hHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cC--CCceeEEEecccCCCH
Q 006979 541 EFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AF--RDTFKAGASLYGVSIP 610 (623)
Q Consensus 541 ~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~--~~~f~a~v~~~g~~d~ 610 (623)
.- ..-+-...-+|+.++++++.++- ...++.++|+|+||.+....+ .. ...+.|+++++-..|+
T Consensus 171 tT----pr~f~ag~t~Dl~~~v~~i~~~~--P~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd~ 237 (409)
T KOG1838|consen 171 TT----PRLFTAGWTEDLREVVNHIKKRY--PQAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWDL 237 (409)
T ss_pred CC----CceeecCCHHHHHHHHHHHHHhC--CCCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccchh
Confidence 11 12233345799999999999873 234899999999999999887 32 2345566666655564
No 136
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=98.52 E-value=2.8e-07 Score=90.11 Aligned_cols=94 Identities=17% Similarity=0.124 Sum_probs=65.8
Q ss_pred CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575 (623)
Q Consensus 496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r 575 (623)
|.||++||.+ .....|...+..|+ .+|.|+.+|+||.|..... ...+.+++. +.+.+. . .++
T Consensus 5 ~~iv~~HG~~--~~~~~~~~~~~~l~-~~~~vi~~d~~G~G~s~~~---------~~~~~~~~~---~~~~~~--~-~~~ 66 (245)
T TIGR01738 5 VHLVLIHGWG--MNAEVFRCLDEELS-AHFTLHLVDLPGHGRSRGF---------GPLSLADAA---EAIAAQ--A-PDP 66 (245)
T ss_pred ceEEEEcCCC--CchhhHHHHHHhhc-cCeEEEEecCCcCccCCCC---------CCcCHHHHH---HHHHHh--C-CCC
Confidence 6789999974 33345666666775 4799999999996653211 112344443 334333 2 269
Q ss_pred eEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979 576 LCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV 607 (623)
Q Consensus 576 v~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~ 607 (623)
+.++|||+||++++.++ .+|++++++|...+.
T Consensus 67 ~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~ 99 (245)
T TIGR01738 67 AIWLGWSLGGLVALHIAATHPDRVRALVTVASS 99 (245)
T ss_pred eEEEEEcHHHHHHHHHHHHCHHhhheeeEecCC
Confidence 99999999999999988 789989998877554
No 137
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=98.51 E-value=4.4e-07 Score=89.30 Aligned_cols=97 Identities=15% Similarity=0.003 Sum_probs=66.1
Q ss_pred CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575 (623)
Q Consensus 496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r 575 (623)
|.||++||.+... ..|...+..+ .+|.|+++|+||.|.....- ...+++..+-+..+++.- +.++
T Consensus 3 p~vvllHG~~~~~--~~w~~~~~~l--~~~~vi~~D~~G~G~S~~~~---------~~~~~~~~~~l~~~l~~~--~~~~ 67 (242)
T PRK11126 3 PWLVFLHGLLGSG--QDWQPVGEAL--PDYPRLYIDLPGHGGSAAIS---------VDGFADVSRLLSQTLQSY--NILP 67 (242)
T ss_pred CEEEEECCCCCCh--HHHHHHHHHc--CCCCEEEecCCCCCCCCCcc---------ccCHHHHHHHHHHHHHHc--CCCC
Confidence 6799999985443 3666666666 37999999999976653311 113344333333333321 2479
Q ss_pred eEEEEcChHHHHHHHHh-cCCC-ceeEEEecccC
Q 006979 576 LCITGGSAGGYTTLAAL-AFRD-TFKAGASLYGV 607 (623)
Q Consensus 576 v~i~G~S~GG~~~~~~~-~~~~-~f~a~v~~~g~ 607 (623)
+.++|||+||.+++.++ .+++ ++++++...+.
T Consensus 68 ~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~ 101 (242)
T PRK11126 68 YWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGN 101 (242)
T ss_pred eEEEEECHHHHHHHHHHHhCCcccccEEEEeCCC
Confidence 99999999999999998 7754 48988877654
No 138
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.51 E-value=5.8e-05 Score=74.72 Aligned_cols=236 Identities=11% Similarity=0.108 Sum_probs=130.8
Q ss_pred CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979 147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (623)
Q Consensus 147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~ 225 (623)
+.+..++++ .+++....++.++++++.++ .....+... ........|+|+++.++....+ ..|++
T Consensus 12 i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~-~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~~---------~~i~i 77 (289)
T cd00200 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETG-ELLRTLKGH----TGPVRDVAASADGTYLASGSSD---------KTIRL 77 (289)
T ss_pred EEEEEEcCCCCEEEEeecCcEEEEEEeeCC-CcEEEEecC----CcceeEEEECCCCCEEEEEcCC---------CeEEE
Confidence 345555554 44445445788999998765 222333322 2234467899999888776543 56888
Q ss_pred EEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcC
Q 006979 226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE 305 (623)
Q Consensus 226 idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (623)
+++.+++. ...+...........|+|+++.|+ .... ...|.++++..+. ....+.... ..+..
T Consensus 78 ~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~-~~~~-------~~~i~~~~~~~~~---~~~~~~~~~----~~i~~ 140 (289)
T cd00200 78 WDLETGEC--VRTLTGHTSYVSSVAFSPDGRILS-SSSR-------DKTIKVWDVETGK---CLTTLRGHT----DWVNS 140 (289)
T ss_pred EEcCcccc--eEEEeccCCcEEEEEEcCCCCEEE-EecC-------CCeEEEEECCCcE---EEEEeccCC----CcEEE
Confidence 89887541 344443333455678999977554 4321 2358888887552 233333333 45678
Q ss_pred ceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEee-cccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEE
Q 006979 306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 384 (623)
Q Consensus 306 ~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~-~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~ 384 (623)
..|+|++++++.... ++ .|..+|..+++...... ....+....|.+ +++.+++... ++ .+.
T Consensus 141 ~~~~~~~~~l~~~~~-~~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~------------~~~~l~~~~~-~~--~i~ 202 (289)
T cd00200 141 VAFSPDGTFVASSSQ-DG--TIKLWDLRTGKCVATLTGHTGEVNSVAFSP------------DGEKLLSSSS-DG--TIK 202 (289)
T ss_pred EEEcCcCCEEEEEcC-CC--cEEEEEccccccceeEecCccccceEEECC------------CcCEEEEecC-CC--cEE
Confidence 899999876655543 23 46667776554333222 221222233332 6656666554 44 455
Q ss_pred EEeCCCCcee-ecccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979 385 ILDDFGHSLS-LLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (623)
Q Consensus 385 ~~d~~~~~~~-~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~ 435 (623)
++|...++.. .+......+..+ +++ +.+++.+. ....++.+++..++
T Consensus 203 i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~---~~~~i~i~~~~~~~ 252 (289)
T cd00200 203 LWDLSTGKCLGTLRGHENGVNSVAFSPD-GYLLASGS---EDGTIRVWDLRTGE 252 (289)
T ss_pred EEECCCCceecchhhcCCceEEEEEcCC-CcEEEEEc---CCCcEEEEEcCCce
Confidence 6676655443 332323334444 333 44554443 23467777776544
No 139
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.49 E-value=2.6e-05 Score=72.99 Aligned_cols=204 Identities=9% Similarity=0.013 Sum_probs=121.9
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccC--CCCCccceeeeecCCceEEEeCC-EEEEEeCCC
Q 006979 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDIT--PKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKD 164 (623)
Q Consensus 89 ~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~--p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~ 164 (623)
+++..+.+-. |...| . +.|+|...||.+..- .-++.+ +++ ..+..+.+. .=+|+...+
T Consensus 84 kNVtaVgF~~dgrWMy-T---gseDgt~kIWdlR~~---~~qR~~~~~sp-----------Vn~vvlhpnQteLis~dqs 145 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMY-T---GSEDGTVKIWDLRSL---SCQRNYQHNSP-----------VNTVVLHPNQTELISGDQS 145 (311)
T ss_pred CceEEEEEeecCeEEE-e---cCCCceEEEEeccCc---ccchhccCCCC-----------cceEEecCCcceEEeecCC
Confidence 4555666643 33333 2 345788889877643 122222 222 345555555 446677788
Q ss_pred CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc-ccceeccc--
Q 006979 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-QEPKVLVS-- 241 (623)
Q Consensus 165 ~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~-~~~~~l~~-- 241 (623)
|.|+++|+... .-..+|.++ +..........|||+.++.+... +..|+.++-++.. ....++..
T Consensus 146 g~irvWDl~~~-~c~~~liPe---~~~~i~sl~v~~dgsml~a~nnk---------G~cyvW~l~~~~~~s~l~P~~k~~ 212 (311)
T KOG0315|consen 146 GNIRVWDLGEN-SCTHELIPE---DDTSIQSLTVMPDGSMLAAANNK---------GNCYVWRLLNHQTASELEPVHKFQ 212 (311)
T ss_pred CcEEEEEccCC-ccccccCCC---CCcceeeEEEcCCCcEEEEecCC---------ccEEEEEccCCCccccceEhhhee
Confidence 89999999754 234556554 13556778899999999886432 5688888766431 11222221
Q ss_pred -CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeC
Q 006979 242 -GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR 320 (623)
Q Consensus 242 -~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~ 320 (623)
.........+|||+|+||-.+.|. .+++.+.++- +.....+.+.. ..+-+-.||.||+.++....
T Consensus 213 ah~~~il~C~lSPd~k~lat~ssdk--------tv~iwn~~~~--~kle~~l~gh~----rWvWdc~FS~dg~YlvTass 278 (311)
T KOG0315|consen 213 AHNGHILRCLLSPDVKYLATCSSDK--------TVKIWNTDDF--FKLELVLTGHQ----RWVWDCAFSADGEYLVTASS 278 (311)
T ss_pred cccceEEEEEECCCCcEEEeecCCc--------eEEEEecCCc--eeeEEEeecCC----ceEEeeeeccCccEEEecCC
Confidence 223344567999999999776553 2566665543 22344556655 44557788999986666555
Q ss_pred CCCeeeEEEEecCCCeEEEE
Q 006979 321 KNGFWNLHKWIESNNEVLAI 340 (623)
Q Consensus 321 ~~g~~~L~~~d~~~~~~~~l 340 (623)
++..+|| ++..++....
T Consensus 279 -d~~~rlW--~~~~~k~v~q 295 (311)
T KOG0315|consen 279 -DHTARLW--DLSAGKEVRQ 295 (311)
T ss_pred -CCceeec--ccccCceeee
Confidence 5666666 4455554333
No 140
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=98.49 E-value=3.1e-07 Score=83.38 Aligned_cols=135 Identities=18% Similarity=0.143 Sum_probs=94.0
Q ss_pred CCCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCC-HHhHHHHcCceEEEEECCCCCC
Q 006979 458 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-LSIQYWTSRGWAFVDVNYGGST 536 (623)
Q Consensus 458 ~~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~-~~~~~~a~~G~~v~~~d~rGs~ 536 (623)
....+.+.+-. .|. -..-++.|.+ .-|++|++|||.+.......- ....-...+||.|+.++|-=+.
T Consensus 42 i~r~e~l~Yg~--~g~-q~VDIwg~~~---------~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasvgY~l~~ 109 (270)
T KOG4627|consen 42 IIRVEHLRYGE--GGR-QLVDIWGSTN---------QAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASVGYNLCP 109 (270)
T ss_pred ccchhccccCC--CCc-eEEEEecCCC---------CccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEeccCcCc
Confidence 45556666644 232 2234455533 347999999998765543322 3455667899999999985432
Q ss_pred CCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh--cCCCceeEEEecccCCCHHHhh
Q 006979 537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL--AFRDTFKAGASLYGVSIPVIIS 614 (623)
Q Consensus 537 ~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~--~~~~~f~a~v~~~g~~d~~~~~ 614 (623)
. ..--...+.|+...++|+.+.- -+.++|.+-|||+|+++++.++ .+..++.+++..+|+.|++.+.
T Consensus 110 q----------~htL~qt~~~~~~gv~filk~~-~n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l~EL~ 178 (270)
T KOG4627|consen 110 Q----------VHTLEQTMTQFTHGVNFILKYT-ENTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDLRELS 178 (270)
T ss_pred c----------cccHHHHHHHHHHHHHHHHHhc-ccceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhHHHHh
Confidence 1 1122345788999999998752 2346799999999999999888 4577899999999999998874
Q ss_pred h
Q 006979 615 E 615 (623)
Q Consensus 615 ~ 615 (623)
.
T Consensus 179 ~ 179 (270)
T KOG4627|consen 179 N 179 (270)
T ss_pred C
Confidence 3
No 141
>PLN02578 hydrolase
Probab=98.49 E-value=2.8e-07 Score=96.44 Aligned_cols=98 Identities=14% Similarity=0.156 Sum_probs=67.1
Q ss_pred CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccc-hHHHHHHHHHHHHhCCCCCCC
Q 006979 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV-DVNDCCSCATFLVGSGKADEK 574 (623)
Q Consensus 496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~-~~~D~~~~~~~l~~~~~~d~~ 574 (623)
|.||++||.+. ....|......|++ +|.|+++|+||.|.+.+... .+... ..+|+.+.++.+. .+
T Consensus 87 ~~vvliHG~~~--~~~~w~~~~~~l~~-~~~v~~~D~~G~G~S~~~~~-----~~~~~~~a~~l~~~i~~~~------~~ 152 (354)
T PLN02578 87 LPIVLIHGFGA--SAFHWRYNIPELAK-KYKVYALDLLGFGWSDKALI-----EYDAMVWRDQVADFVKEVV------KE 152 (354)
T ss_pred CeEEEECCCCC--CHHHHHHHHHHHhc-CCEEEEECCCCCCCCCCccc-----ccCHHHHHHHHHHHHHHhc------cC
Confidence 34788999743 23345455666654 69999999999776654321 12111 1234444444442 36
Q ss_pred ceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979 575 RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV 607 (623)
Q Consensus 575 rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~ 607 (623)
++.++|||+||++++.++ .+|++++++|...+.
T Consensus 153 ~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~~ 186 (354)
T PLN02578 153 PAVLVGNSLGGFTALSTAVGYPELVAGVALLNSA 186 (354)
T ss_pred CeEEEEECHHHHHHHHHHHhChHhcceEEEECCC
Confidence 899999999999999999 889999999987653
No 142
>PRK06489 hypothetical protein; Provisional
Probab=98.48 E-value=1.2e-06 Score=91.79 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=66.8
Q ss_pred CCEEEEecCCCCCcccCcCCHHhHHH-------HcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHH-HHHH
Q 006979 495 PPLLVKSHGGPTSEARGILNLSIQYW-------TSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCA-TFLV 566 (623)
Q Consensus 495 ~Pliv~~hGg~~~~~~~~~~~~~~~~-------a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~-~~l~ 566 (623)
.|.||++||.+.+.....-......+ ..++|.|+++|+||.|.....- ...........++|+.+.+ ..+.
T Consensus 69 gpplvllHG~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~GhG~S~~p~-~~~~~~~~~~~~~~~a~~~~~~l~ 147 (360)
T PRK06489 69 DNAVLVLHGTGGSGKSFLSPTFAGELFGPGQPLDASKYFIILPDGIGHGKSSKPS-DGLRAAFPRYDYDDMVEAQYRLVT 147 (360)
T ss_pred CCeEEEeCCCCCchhhhccchhHHHhcCCCCcccccCCEEEEeCCCCCCCCCCCC-cCCCCCCCcccHHHHHHHHHHHHH
Confidence 46799999986543221101222222 2578999999999976542110 0000011123456665443 3343
Q ss_pred hCCCCCCCceE-EEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979 567 GSGKADEKRLC-ITGGSAGGYTTLAAL-AFRDTFKAGASLYGV 607 (623)
Q Consensus 567 ~~~~~d~~rv~-i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~ 607 (623)
++ .+-+++. |+|+||||++++.++ .+|++++++|...+.
T Consensus 148 ~~--lgi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~ 188 (360)
T PRK06489 148 EG--LGVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQ 188 (360)
T ss_pred Hh--cCCCceeEEEEECHHHHHHHHHHHhCchhhheeeeeccC
Confidence 43 2235774 899999999999998 899999999987654
No 143
>PRK10115 protease 2; Provisional
Probab=98.47 E-value=2.4e-05 Score=88.37 Aligned_cols=220 Identities=10% Similarity=0.016 Sum_probs=127.4
Q ss_pred eeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCC
Q 006979 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW 270 (623)
Q Consensus 191 ~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~ 270 (623)
.......|||||++|+|..+..+. ...+|+++|+.+|... ...+. +.. ....|++||+.|+|...++.. .
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~----E~~~l~v~d~~tg~~l-~~~i~-~~~--~~~~w~~D~~~~~y~~~~~~~--~ 196 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSR----RQYGIRFRNLETGNWY-PELLD-NVE--PSFVWANDSWTFYYVRKHPVT--L 196 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCc----EEEEEEEEECCCCCCC-Ccccc-Ccc--eEEEEeeCCCEEEEEEecCCC--C
Confidence 456678899999999998664433 3488999999988621 12222 222 347899999999999864311 0
Q ss_pred CceEEEEEEecCCCceeeeEEEcCCCCCccccCcCcee-CCCCc-EEEEEeCCCCeeeEEEEe--cCCCeEEEEeecccc
Q 006979 271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW-SSKGE-LFFVTDRKNGFWNLHKWI--ESNNEVLAIYSLDAE 346 (623)
Q Consensus 271 ~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~w-s~DG~-l~~~~~~~~g~~~L~~~d--~~~~~~~~l~~~~~~ 346 (623)
...+||+.++.++.. ....++.+.+.. ..-..| +.|++ +++.+.. .....++.++ ..+++.+.+.+...+
T Consensus 197 ~~~~v~~h~lgt~~~-~d~lv~~e~~~~----~~~~~~~s~d~~~l~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~ 270 (686)
T PRK10115 197 LPYQVWRHTIGTPAS-QDELVYEEKDDT----FYVSLHKTTSKHYVVIHLAS-ATTSEVLLLDAELADAEPFVFLPRRKD 270 (686)
T ss_pred CCCEEEEEECCCChh-HCeEEEeeCCCC----EEEEEEEcCCCCEEEEEEEC-CccccEEEEECcCCCCCceEEEECCCC
Confidence 236799999987621 123444443311 111234 34888 5543333 3334566555 333444444432211
Q ss_pred cccccccccCcceeEEeecCCCCEEEEEEEEC-CeEEEEEEeCC-CCceeecccC--CcceEeeeecCCEEEEEEecCCC
Q 006979 347 FSRPLWVFGINSYEIIQSHGEKNLIACSYRQN-GRSYLGILDDF-GHSLSLLDIP--FTDIDNITLGNDCLFVEGASGVE 422 (623)
Q Consensus 347 ~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~-g~~~L~~~d~~-~~~~~~lt~~--~~~v~~~~~~~~~~~~~~~s~~~ 422 (623)
. .+.+.. .++.+|+.++.+ ...+|+.+++. .++++.|-.+ ...+..+...++.+++..... .
T Consensus 271 ~----------~~~~~~---~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~-g 336 (686)
T PRK10115 271 H----------EYSLDH---YQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQR-G 336 (686)
T ss_pred C----------EEEEEe---CCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeC-C
Confidence 1 111111 456777777653 46678888887 4566666554 234666655577777766543 3
Q ss_pred CCeEEEEEcCCCcceeee
Q 006979 423 PSSVAKVTLDDHKLKAVD 440 (623)
Q Consensus 423 ~~~ly~~~l~~~~~~~lt 440 (623)
..+++.+++.+++.+.|+
T Consensus 337 ~~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 337 LTSLRQINRKTREVIGIA 354 (686)
T ss_pred EEEEEEEcCCCCceEEec
Confidence 346888887766655544
No 144
>PRK07581 hypothetical protein; Validated
Probab=98.45 E-value=6.2e-07 Score=93.28 Aligned_cols=109 Identities=16% Similarity=0.113 Sum_probs=67.7
Q ss_pred CCCEEEEecCCCCCcccCcCCHHh---HHHHcCceEEEEECCCCCCCCchhHHH---hhccCCccchH-HHHHHHHHHHH
Q 006979 494 KPPLLVKSHGGPTSEARGILNLSI---QYWTSRGWAFVDVNYGGSTGYGREFRE---RLLGRWGIVDV-NDCCSCATFLV 566 (623)
Q Consensus 494 ~~Pliv~~hGg~~~~~~~~~~~~~---~~~a~~G~~v~~~d~rGs~~~g~~~~~---~~~~~~g~~~~-~D~~~~~~~l~ 566 (623)
..|+||++||.++.... +.... ..|...+|.|+++|+||.|.+...... .....+..... +|+.+....+.
T Consensus 40 ~~~~vll~~~~~~~~~~--~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 117 (339)
T PRK07581 40 KDNAILYPTWYSGTHQD--NEWLIGPGRALDPEKYFIIIPNMFGNGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHRLLT 117 (339)
T ss_pred CCCEEEEeCCCCCCccc--chhhccCCCccCcCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHHHHH
Confidence 45778888877433222 22221 356667999999999997654322100 00011111123 45554444454
Q ss_pred h-CCCCCCCce-EEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979 567 G-SGKADEKRL-CITGGSAGGYTTLAAL-AFRDTFKAGASLYGV 607 (623)
Q Consensus 567 ~-~~~~d~~rv-~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~ 607 (623)
+ .+ .+++ .|+|+||||++++.++ .||++++..|..++.
T Consensus 118 ~~lg---i~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~~ 158 (339)
T PRK07581 118 EKFG---IERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAGT 158 (339)
T ss_pred HHhC---CCceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeecC
Confidence 4 33 3684 7899999999999999 899999999988654
No 145
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.44 E-value=0.00026 Score=72.96 Aligned_cols=148 Identities=14% Similarity=0.093 Sum_probs=83.9
Q ss_pred CCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCC--CCc------
Q 006979 162 YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG--QNI------ 233 (623)
Q Consensus 162 ~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~--g~~------ 233 (623)
+..|.+.++|... +...|..+...-..+..|..|++|+++|+++-|-... ....+..|..+ |+.
T Consensus 78 D~sG~vRIWdtt~---~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrer-----fg~~F~~DSG~SvGei~GhSr~ 149 (603)
T KOG0318|consen 78 DVSGKVRIWDTTQ---KEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRER-----FGHVFLWDSGNSVGEITGHSRR 149 (603)
T ss_pred CCcCcEEEEeccC---cceeeeeeeeecccccccceeCCCCcEEEEEecCccc-----eeEEEEecCCCccceeecccee
Confidence 3456688887642 2333333211113567899999999999998764321 23344444322 110
Q ss_pred ---------ccceecccC----------------------CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecC
Q 006979 234 ---------QEPKVLVSG----------------------SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE 282 (623)
Q Consensus 234 ---------~~~~~l~~~----------------------~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~ 282 (623)
.+-|.++.+ ..|+...++||||++.+-+..|. .++++|=.+
T Consensus 150 ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDg--------ki~iyDGkt 221 (603)
T KOG0318|consen 150 INSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDG--------KIYIYDGKT 221 (603)
T ss_pred EeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCc--------cEEEEcCCC
Confidence 001111211 23566778999999887666443 488888666
Q ss_pred CCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEe
Q 006979 283 NGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWI 331 (623)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d 331 (623)
++ ..-.+.+.+ .-.+++....|+||++ ++-++.. ...+||-+.
T Consensus 222 ge---~vg~l~~~~-aHkGsIfalsWsPDs~~~~T~SaD--kt~KIWdVs 265 (603)
T KOG0318|consen 222 GE---KVGELEDSD-AHKGSIFALSWSPDSTQFLTVSAD--KTIKIWDVS 265 (603)
T ss_pred cc---EEEEecCCC-CccccEEEEEECCCCceEEEecCC--ceEEEEEee
Confidence 53 223333322 3337888999999999 5544433 455666443
No 146
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=98.41 E-value=5.1e-07 Score=94.59 Aligned_cols=100 Identities=15% Similarity=0.146 Sum_probs=66.0
Q ss_pred CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575 (623)
Q Consensus 496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r 575 (623)
|.||++||.+.. ...|...+..|++ +|.|+.+|+||.|..... .. . ....++..+.+..++++ ...++
T Consensus 89 p~lvllHG~~~~--~~~w~~~~~~L~~-~~~via~Dl~G~G~S~~~-----~~-~-~~~~~~~a~~l~~~l~~--l~~~~ 156 (360)
T PLN02679 89 PPVLLVHGFGAS--IPHWRRNIGVLAK-NYTVYAIDLLGFGASDKP-----PG-F-SYTMETWAELILDFLEE--VVQKP 156 (360)
T ss_pred CeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEECCCCCCCCCCC-----CC-c-cccHHHHHHHHHHHHHH--hcCCC
Confidence 678999998543 3356666777765 799999999996654321 00 0 11233333333222222 12369
Q ss_pred eEEEEcChHHHHHHHHh-c-CCCceeEEEecccC
Q 006979 576 LCITGGSAGGYTTLAAL-A-FRDTFKAGASLYGV 607 (623)
Q Consensus 576 v~i~G~S~GG~~~~~~~-~-~~~~f~a~v~~~g~ 607 (623)
+.++|||+||++++.++ . +|++++++|...+.
T Consensus 157 ~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~ 190 (360)
T PLN02679 157 TVLIGNSVGSLACVIAASESTRDLVRGLVLLNCA 190 (360)
T ss_pred eEEEEECHHHHHHHHHHHhcChhhcCEEEEECCc
Confidence 99999999999998766 3 69999999988754
No 147
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.41 E-value=1.1e-05 Score=76.26 Aligned_cols=119 Identities=11% Similarity=0.114 Sum_probs=73.5
Q ss_pred cEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCc
Q 006979 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF 245 (623)
Q Consensus 166 ~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~ 245 (623)
.||.++.... ....+.-.. .....+++|+|+|++++.+....+ ..+.++|+++.. +..+. ...
T Consensus 40 ~l~~~~~~~~--~~~~i~l~~---~~~I~~~~WsP~g~~favi~g~~~-------~~v~lyd~~~~~---i~~~~--~~~ 102 (194)
T PF08662_consen 40 ELFYLNEKNI--PVESIELKK---EGPIHDVAWSPNGNEFAVIYGSMP-------AKVTLYDVKGKK---IFSFG--TQP 102 (194)
T ss_pred EEEEEecCCC--ccceeeccC---CCceEEEEECcCCCEEEEEEccCC-------cccEEEcCcccE---eEeec--CCC
Confidence 4888877654 344443220 223778999999999887754321 346666776433 33332 333
Q ss_pred ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEE
Q 006979 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF 315 (623)
Q Consensus 246 ~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~ 315 (623)
.+...|||+|++|+...... ..+.|.++|.... ..+..... .......|+|||+.+
T Consensus 103 ~n~i~wsP~G~~l~~~g~~n-----~~G~l~~wd~~~~-----~~i~~~~~----~~~t~~~WsPdGr~~ 158 (194)
T PF08662_consen 103 RNTISWSPDGRFLVLAGFGN-----LNGDLEFWDVRKK-----KKISTFEH----SDATDVEWSPDGRYL 158 (194)
T ss_pred ceEEEECCCCCEEEEEEccC-----CCcEEEEEECCCC-----EEeecccc----CcEEEEEEcCCCCEE
Confidence 45678999999999876432 2456888898754 22222222 345688999999933
No 148
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.41 E-value=2.3e-05 Score=74.18 Aligned_cols=150 Identities=13% Similarity=0.138 Sum_probs=88.3
Q ss_pred cceeeCCCCCEEEEEEecc-CCC--CCCceeEEEEEEcCCCCcccceeccc-CCCcccceeeCCCCCEEEEEEecCCCCC
Q 006979 194 ADGIFDPRFNRYVTVREDR-RQD--ALNSTTEIVAIALNGQNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMP 269 (623)
Q Consensus 194 ~d~~~sPdG~~l~~v~~~~-~~~--~~~~~~~L~~idl~~g~~~~~~~l~~-~~~~~~~p~wSPDG~~la~~~~~~~~~p 269 (623)
.++.|+|+|++|++..... ... .......||.++..+.. ...+.- ....+...+|||+|++++.+....+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~---~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~--- 82 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP---VESIELKKEGPIHDVAWSPNGNEFAVIYGSMP--- 82 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc---cceeeccCCCceEEEEECcCCCEEEEEEccCC---
Confidence 3577999999998876622 211 11235789999887765 444432 2223667899999999998864332
Q ss_pred CCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEee-cccccc
Q 006979 270 WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFS 348 (623)
Q Consensus 270 ~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~-~~~~~~ 348 (623)
..+.++|++.. ....+.. .....+.|+|+|++++++..++-...|..+|..+.+ .+.. +.....
T Consensus 83 ---~~v~lyd~~~~----~i~~~~~------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~--~i~~~~~~~~t 147 (194)
T PF08662_consen 83 ---AKVTLYDVKGK----KIFSFGT------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK--KISTFEHSDAT 147 (194)
T ss_pred ---cccEEEcCccc----EeEeecC------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE--EeeccccCcEE
Confidence 14666677532 2222221 234578999999955555432223456777776443 2322 222233
Q ss_pred cccccccCcceeEEeecCCCCEEEEEEE
Q 006979 349 RPLWVFGINSYEIIQSHGEKNLIACSYR 376 (623)
Q Consensus 349 ~~~w~~~~~~~~~l~~s~~~~~l~~~~~ 376 (623)
...|++ +|+.++....
T Consensus 148 ~~~WsP------------dGr~~~ta~t 163 (194)
T PF08662_consen 148 DVEWSP------------DGRYLATATT 163 (194)
T ss_pred EEEEcC------------CCCEEEEEEe
Confidence 445554 8888776654
No 149
>PRK11071 esterase YqiA; Provisional
Probab=98.39 E-value=1.3e-06 Score=82.42 Aligned_cols=91 Identities=18% Similarity=0.120 Sum_probs=62.2
Q ss_pred CEEEEecCCCCCcccCcCCHHhHHHHc--CceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCC
Q 006979 496 PLLVKSHGGPTSEARGILNLSIQYWTS--RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (623)
Q Consensus 496 Pliv~~hGg~~~~~~~~~~~~~~~~a~--~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~ 573 (623)
|.||++||.+.+...........++.+ .+|.|+++|.+|. + ++..+.++.+.++. +.
T Consensus 2 p~illlHGf~ss~~~~~~~~~~~~l~~~~~~~~v~~~dl~g~---~----------------~~~~~~l~~l~~~~--~~ 60 (190)
T PRK11071 2 STLLYLHGFNSSPRSAKATLLKNWLAQHHPDIEMIVPQLPPY---P----------------ADAAELLESLVLEH--GG 60 (190)
T ss_pred CeEEEECCCCCCcchHHHHHHHHHHHHhCCCCeEEeCCCCCC---H----------------HHHHHHHHHHHHHc--CC
Confidence 679999998544443222234455655 3799999999973 2 23444555555442 23
Q ss_pred CceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979 574 KRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP 610 (623)
Q Consensus 574 ~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~ 610 (623)
+++.++|+|+||++++.++ .+|. + +|..+|..+.
T Consensus 61 ~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~~~~~~~ 95 (190)
T PRK11071 61 DPLGLVGSSLGGYYATWLSQCFML--P-AVVVNPAVRP 95 (190)
T ss_pred CCeEEEEECHHHHHHHHHHHHcCC--C-EEEECCCCCH
Confidence 6899999999999999999 7773 3 4677777774
No 150
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.38 E-value=1.7e-06 Score=85.71 Aligned_cols=103 Identities=13% Similarity=0.093 Sum_probs=70.9
Q ss_pred CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHH-HHHhCCCCCCC
Q 006979 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCAT-FLVGSGKADEK 574 (623)
Q Consensus 496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~-~l~~~~~~d~~ 574 (623)
+-||++||.. .....|.....-+++ ...|.++|..|.|. +.+....-+.-.. ..-+++.++ |-.+++ + +
T Consensus 91 ~plVliHGyG--Ag~g~f~~Nf~~La~-~~~vyaiDllG~G~---SSRP~F~~d~~~~-e~~fvesiE~WR~~~~-L--~ 160 (365)
T KOG4409|consen 91 TPLVLIHGYG--AGLGLFFRNFDDLAK-IRNVYAIDLLGFGR---SSRPKFSIDPTTA-EKEFVESIEQWRKKMG-L--E 160 (365)
T ss_pred CcEEEEeccc--hhHHHHHHhhhhhhh-cCceEEecccCCCC---CCCCCCCCCcccc-hHHHHHHHHHHHHHcC-C--c
Confidence 4466799973 333344455666766 89999999999554 4333333222222 234555555 555565 3 5
Q ss_pred ceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979 575 RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608 (623)
Q Consensus 575 rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~ 608 (623)
++.|+|||+|||++...+ .||++++-.|...|..
T Consensus 161 KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~G 195 (365)
T KOG4409|consen 161 KMILVGHSFGGYLAAKYALKYPERVEKLILVSPWG 195 (365)
T ss_pred ceeEeeccchHHHHHHHHHhChHhhceEEEecccc
Confidence 999999999999999888 9999999999888864
No 151
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=98.37 E-value=1.9e-06 Score=90.28 Aligned_cols=105 Identities=11% Similarity=0.022 Sum_probs=72.3
Q ss_pred CCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCC
Q 006979 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (623)
Q Consensus 495 ~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~ 574 (623)
.|.||++||.+.. ...|...+..|++ +|.|+++|++|.|....... ........+++...+..++++- ..+
T Consensus 127 ~~~ivllHG~~~~--~~~w~~~~~~L~~-~~~Via~DlpG~G~S~~p~~----~~~~~ys~~~~a~~l~~~i~~l--~~~ 197 (383)
T PLN03084 127 NPPVLLIHGFPSQ--AYSYRKVLPVLSK-NYHAIAFDWLGFGFSDKPQP----GYGFNYTLDEYVSSLESLIDEL--KSD 197 (383)
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEECCCCCCCCCCCcc----cccccCCHHHHHHHHHHHHHHh--CCC
Confidence 3689999998543 3356666777765 79999999999665433210 0001223455555444444431 236
Q ss_pred ceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979 575 RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608 (623)
Q Consensus 575 rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~ 608 (623)
++.|+|+|+||.+++.++ .+|++++++|...+..
T Consensus 198 ~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~ 232 (383)
T PLN03084 198 KVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPL 232 (383)
T ss_pred CceEEEECHHHHHHHHHHHhChHhhcEEEEECCCC
Confidence 899999999999999888 8899999999998764
No 152
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=98.35 E-value=2e-06 Score=90.42 Aligned_cols=110 Identities=8% Similarity=-0.026 Sum_probs=73.6
Q ss_pred CCCEEEEecCCCCCcccCcCCH-HhHHHHc--CceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCC
Q 006979 494 KPPLLVKSHGGPTSEARGILNL-SIQYWTS--RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 570 (623)
Q Consensus 494 ~~Pliv~~hGg~~~~~~~~~~~-~~~~~a~--~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~ 570 (623)
..|++|++||.........|.. ..+.|.. ..|.|+++|.+|.+... |..+.. .-....+++.+.+++|.++..
T Consensus 40 ~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~g~s~--y~~a~~--~t~~vg~~la~lI~~L~~~~g 115 (442)
T TIGR03230 40 ETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSRAQQH--YPTSAA--YTKLVGKDVAKFVNWMQEEFN 115 (442)
T ss_pred CCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCcCCCC--Cccccc--cHHHHHHHHHHHHHHHHHhhC
Confidence 3578999999854322223332 3334432 36999999999854321 111111 111223567778888876534
Q ss_pred CCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979 571 ADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV 607 (623)
Q Consensus 571 ~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~ 607 (623)
++.++|.++|||+||+++..++ .++.++..++...|.
T Consensus 116 l~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPA 153 (442)
T TIGR03230 116 YPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPA 153 (442)
T ss_pred CCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCC
Confidence 6789999999999999999988 678889999988775
No 153
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=98.32 E-value=2.4e-06 Score=89.03 Aligned_cols=78 Identities=14% Similarity=0.138 Sum_probs=51.3
Q ss_pred HHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc-eEEEEcChHHHHHHHHh-cCCC
Q 006979 519 YWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR-LCITGGSAGGYTTLAAL-AFRD 596 (623)
Q Consensus 519 ~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r-v~i~G~S~GG~~~~~~~-~~~~ 596 (623)
.|...+|.|+.+|+||.|+.. ...+ ..+|..+.+..+++. .+-++ +.++||||||++++.++ .+|+
T Consensus 94 ~L~~~~~~Vi~~Dl~G~g~s~-------~~~~---~~~~~a~dl~~ll~~--l~l~~~~~lvG~SmGG~vA~~~A~~~P~ 161 (343)
T PRK08775 94 ALDPARFRLLAFDFIGADGSL-------DVPI---DTADQADAIALLLDA--LGIARLHAFVGYSYGALVGLQFASRHPA 161 (343)
T ss_pred ccCccccEEEEEeCCCCCCCC-------CCCC---CHHHHHHHHHHHHHH--cCCCcceEEEEECHHHHHHHHHHHHChH
Confidence 354568999999999854321 1111 123333333333332 12235 57999999999999998 8999
Q ss_pred ceeEEEecccCC
Q 006979 597 TFKAGASLYGVS 608 (623)
Q Consensus 597 ~f~a~v~~~g~~ 608 (623)
++++.|...+..
T Consensus 162 ~V~~LvLi~s~~ 173 (343)
T PRK08775 162 RVRTLVVVSGAH 173 (343)
T ss_pred hhheEEEECccc
Confidence 999999887653
No 154
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=98.30 E-value=1.1e-06 Score=85.13 Aligned_cols=116 Identities=19% Similarity=0.155 Sum_probs=60.8
Q ss_pred CCCCCEEEEecCCCCCcccCcCCHHhH-HHHcCceEEEEECCCC---CCCCch---hHHHhhccCC-ccchHHHHH----
Q 006979 492 EEKPPLLVKSHGGPTSEARGILNLSIQ-YWTSRGWAFVDVNYGG---STGYGR---EFRERLLGRW-GIVDVNDCC---- 559 (623)
Q Consensus 492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~-~~a~~G~~v~~~d~rG---s~~~g~---~~~~~~~~~~-g~~~~~D~~---- 559 (623)
++..|+||++||..... ..+..... ........++.++-+- ....|. .|.+...... ...+.+++.
T Consensus 11 ~~~~~lvi~LHG~G~~~--~~~~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~~ 88 (216)
T PF02230_consen 11 GKAKPLVILLHGYGDSE--DLFALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESAE 88 (216)
T ss_dssp ST-SEEEEEE--TTS-H--HHHHHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHHH
T ss_pred CCCceEEEEECCCCCCc--chhHHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHHH
Confidence 56789999999984332 22222222 2234567777776432 001122 4433211111 112233333
Q ss_pred ---HHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979 560 ---SCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP 610 (623)
Q Consensus 560 ---~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~ 610 (623)
+.++...+.+ +|++||++.|+|.||.+++.++ ++|..|+++|+++|..-.
T Consensus 89 ~l~~li~~~~~~~-i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~ 142 (216)
T PF02230_consen 89 RLDELIDEEVAYG-IDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPP 142 (216)
T ss_dssp HHHHHHHHHHHTT---GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TT
T ss_pred HHHHHHHHHHHcC-CChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeeccccc
Confidence 3333334455 8999999999999999999999 899999999999997543
No 155
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.28 E-value=0.00069 Score=80.26 Aligned_cols=263 Identities=14% Similarity=0.108 Sum_probs=134.9
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCC-C-Ccc------ceeeeecCCceEEEe--CCEE
Q 006979 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPK-E-YAV------RTTAQEYGGGAFRIF--GDTV 157 (623)
Q Consensus 89 ~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~-~-~~~------r~~~~~~g~~~~~~s--~d~l 157 (623)
..++.+.+++ ++.+|..+.. .+| +++++.. +.....+.. . .+. ...+.. -...+++ ++.|
T Consensus 568 ~~P~gvavd~~~g~lyVaDs~---n~r--I~v~d~~--G~~i~~ig~~g~~G~~dG~~~~a~f~~--P~GIavd~~gn~L 638 (1057)
T PLN02919 568 KFPGKLAIDLLNNRLFISDSN---HNR--IVVTDLD--GNFIVQIGSTGEEGLRDGSFEDATFNR--PQGLAYNAKKNLL 638 (1057)
T ss_pred CCCceEEEECCCCeEEEEECC---CCe--EEEEeCC--CCEEEEEccCCCcCCCCCchhccccCC--CcEEEEeCCCCEE
Confidence 3456788887 7888887743 244 4555544 222211111 0 000 001111 1223444 3457
Q ss_pred EEEeCCCCcEEEEeCCCCCCCceecCCCC-------CC-C-----CeeecceeeCCCCCEEEEEEeccCCCCCCceeEEE
Q 006979 158 IFSNYKDQRLYKHSIDSKDSSPLPITPDY-------GE-P-----LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (623)
Q Consensus 158 ~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~-------~~-~-----~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~ 224 (623)
|+.+...++|.++|+.++ ..+.+.... +. . ...-.+.+++|++..+++..... +.|+
T Consensus 639 YVaDt~n~~Ir~id~~~~--~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~--------~~I~ 708 (1057)
T PLN02919 639 YVADTENHALREIDFVNE--TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ--------HQIW 708 (1057)
T ss_pred EEEeCCCceEEEEecCCC--EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC--------CeEE
Confidence 777666667888998765 444443210 00 0 01123567899666665544322 6689
Q ss_pred EEEcCCCCcccceecccCC---------------CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeee
Q 006979 225 AIALNGQNIQEPKVLVSGS---------------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR 289 (623)
Q Consensus 225 ~idl~~g~~~~~~~l~~~~---------------~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~ 289 (623)
++|..++. ...+.... ....+.+++|||++|++.... ..+|.++|+++++.
T Consensus 709 v~d~~~g~---v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-------n~~Irv~D~~tg~~---- 774 (1057)
T PLN02919 709 EYNISDGV---TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-------SSSIRALDLKTGGS---- 774 (1057)
T ss_pred EEECCCCe---EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-------CCeEEEEECCCCcE----
Confidence 99987765 33322110 112235699999988776432 34689999876531
Q ss_pred EEEcCCCC------------------CccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecc-cccc-c
Q 006979 290 VCVAGFDP------------------TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLD-AEFS-R 349 (623)
Q Consensus 290 ~~~~~~~~------------------~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~-~~~~-~ 349 (623)
.++.+.++ .....+..+.+++||+ +|+++. +..+|.++|++++....+.... ..+. +
T Consensus 775 ~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs--~N~rIrviD~~tg~v~tiaG~G~~G~~dG 851 (1057)
T PLN02919 775 RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADS--YNHKIKKLDPATKRVTTLAGTGKAGFKDG 851 (1057)
T ss_pred EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEEC--CCCEEEEEECCCCeEEEEeccCCcCCCCC
Confidence 11111000 0001345677899996 456665 5667889999888766554211 0000 0
Q ss_pred cc---ccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCce
Q 006979 350 PL---WVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL 393 (623)
Q Consensus 350 ~~---w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~ 393 (623)
.. -......+.+. ++| .+|++. .+...|.++|+++++.
T Consensus 852 ~~~~a~l~~P~GIavd---~dG-~lyVaD--t~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 852 KALKAQLSEPAGLALG---ENG-RLFVAD--TNNSLIRYLDLNKGEA 892 (1057)
T ss_pred cccccccCCceEEEEe---CCC-CEEEEE--CCCCEEEEEECCCCcc
Confidence 00 00011233443 244 466654 3344577778877654
No 156
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=98.27 E-value=3.4e-06 Score=89.06 Aligned_cols=112 Identities=13% Similarity=0.176 Sum_probs=70.0
Q ss_pred CCEEEEecCCCCCcccCc-----------CCHHh---HHHHcCceEEEEECCCCC-CCC-chhHHHh-----hccCCccc
Q 006979 495 PPLLVKSHGGPTSEARGI-----------LNLSI---QYWTSRGWAFVDVNYGGS-TGY-GREFRER-----LLGRWGIV 553 (623)
Q Consensus 495 ~Pliv~~hGg~~~~~~~~-----------~~~~~---~~~a~~G~~v~~~d~rGs-~~~-g~~~~~~-----~~~~~g~~ 553 (623)
.|.||++||.+....... |...+ ..+...+|.|+++|++|. ++. +...... ...++...
T Consensus 48 ~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s~~~~~~~~~~~~~~~~~~~~~ 127 (379)
T PRK00175 48 SNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGSTGPSSINPDTGKPYGSDFPVI 127 (379)
T ss_pred CCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCCCCCCCCCCCCCCcccCCCCcC
Confidence 478999999965543211 22221 123356899999999983 221 2110000 00011234
Q ss_pred hHHHHHHHHHHHHhCCCCCCCc-eEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979 554 DVNDCCSCATFLVGSGKADEKR-LCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608 (623)
Q Consensus 554 ~~~D~~~~~~~l~~~~~~d~~r-v~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~ 608 (623)
.++|..+.+..+++.- +.++ +.++|+||||.+++.++ .+|++++++|...+..
T Consensus 128 ~~~~~~~~~~~~l~~l--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 182 (379)
T PRK00175 128 TIRDWVRAQARLLDAL--GITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSA 182 (379)
T ss_pred CHHHHHHHHHHHHHHh--CCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCc
Confidence 5667666666655542 2357 48999999999999988 8999999999887653
No 157
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=98.26 E-value=3.2e-06 Score=80.69 Aligned_cols=119 Identities=18% Similarity=0.200 Sum_probs=79.7
Q ss_pred CCCCCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcC-ceEEEEECCCC
Q 006979 456 SYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSR-GWAFVDVNYGG 534 (623)
Q Consensus 456 ~~~~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~-G~~v~~~d~rG 534 (623)
.++.+.+.+.++.. ++ ++..++-.|.. ..-|++++.|||.. ..-.|...++.+.++ -..|+++|.||
T Consensus 45 ~yFdekedv~i~~~-~~-t~n~Y~t~~~~--------t~gpil~l~HG~G~--S~LSfA~~a~el~s~~~~r~~a~DlRg 112 (343)
T KOG2564|consen 45 DYFDEKEDVSIDGS-DL-TFNVYLTLPSA--------TEGPILLLLHGGGS--SALSFAIFASELKSKIRCRCLALDLRG 112 (343)
T ss_pred HhhccccccccCCC-cc-eEEEEEecCCC--------CCccEEEEeecCcc--cchhHHHHHHHHHhhcceeEEEeeccc
Confidence 44556677777664 33 56666666642 33589999999943 334666677777653 56779999999
Q ss_pred CCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh
Q 006979 535 STGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL 592 (623)
Q Consensus 535 s~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~ 592 (623)
.|+.--+-...+. ......|+.+.++++... ++..|.++||||||.++...+
T Consensus 113 HGeTk~~~e~dlS---~eT~~KD~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a 164 (343)
T KOG2564|consen 113 HGETKVENEDDLS---LETMSKDFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTA 164 (343)
T ss_pred cCccccCChhhcC---HHHHHHHHHHHHHHHhcc---CCCceEEEeccccchhhhhhh
Confidence 6653222111111 123467888888888744 246799999999999998777
No 158
>PRK05855 short chain dehydrogenase; Validated
Probab=98.23 E-value=5.7e-06 Score=92.75 Aligned_cols=113 Identities=12% Similarity=0.134 Sum_probs=68.9
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCC
Q 006979 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (623)
Q Consensus 471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~ 550 (623)
+|..++.+.+.+ ...|.||++||.+.. ...|......| .+||.|+.+|+||.|.+.... ....+
T Consensus 11 ~g~~l~~~~~g~----------~~~~~ivllHG~~~~--~~~w~~~~~~L-~~~~~Vi~~D~~G~G~S~~~~---~~~~~ 74 (582)
T PRK05855 11 DGVRLAVYEWGD----------PDRPTVVLVHGYPDN--HEVWDGVAPLL-ADRFRVVAYDVRGAGRSSAPK---RTAAY 74 (582)
T ss_pred CCEEEEEEEcCC----------CCCCeEEEEcCCCch--HHHHHHHHHHh-hcceEEEEecCCCCCCCCCCC---ccccc
Confidence 788888665532 124789999998533 34566677777 678999999999976543211 00111
Q ss_pred c-cchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcC---CCceeEEEec
Q 006979 551 G-IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASL 604 (623)
Q Consensus 551 g-~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~---~~~f~a~v~~ 604 (623)
. ....+|+.+.++.+. . ..++.++|||+||.+++.++.. ++.+...+..
T Consensus 75 ~~~~~a~dl~~~i~~l~----~-~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~ 127 (582)
T PRK05855 75 TLARLADDFAAVIDAVS----P-DRPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSV 127 (582)
T ss_pred CHHHHHHHHHHHHHHhC----C-CCcEEEEecChHHHHHHHHHhCccchhhhhhheec
Confidence 1 112344555554431 1 2349999999999999877733 3444444433
No 159
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=98.22 E-value=6e-06 Score=75.81 Aligned_cols=138 Identities=16% Similarity=0.163 Sum_probs=99.0
Q ss_pred CCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCC
Q 006979 459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY 538 (623)
Q Consensus 459 ~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~ 538 (623)
..++.|.++.. .+..+.+.+..-. ..-++|++||.-.....-.+...+..+++.||.++.+|++|.|++
T Consensus 8 ~~~~~ivi~n~-~ne~lvg~lh~tg----------s~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS 76 (269)
T KOG4667|consen 8 QIAQKIVIPNS-RNEKLVGLLHETG----------STEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGES 76 (269)
T ss_pred eeeeEEEeccC-CCchhhcceeccC----------CceEEEEeeccccccchHHHHHHHHHHHhcCceEEEEEecCCCCc
Confidence 35667777776 6666666555332 235899999983222222334678889999999999999998887
Q ss_pred chhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHHhhh
Q 006979 539 GREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVIISE 615 (623)
Q Consensus 539 g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~~~ 615 (623)
...|.- + .+..+.+|+..+++++.....+ --+|+|||-||-+++..+ .+++ ..-+|..+|-.|+.....
T Consensus 77 ~gsf~~---G-n~~~eadDL~sV~q~~s~~nr~---v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I~ 146 (269)
T KOG4667|consen 77 EGSFYY---G-NYNTEADDLHSVIQYFSNSNRV---VPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGIN 146 (269)
T ss_pred CCcccc---C-cccchHHHHHHHHHHhccCceE---EEEEEeecCccHHHHHHHHhhcC-chheEEcccccchhcchh
Confidence 665542 2 2234679999999999875322 237999999999999888 6665 677788899888876654
No 160
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.22 E-value=0.00011 Score=74.52 Aligned_cols=202 Identities=12% Similarity=0.099 Sum_probs=117.6
Q ss_pred CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCC--ceEEEeCCEEEEEeCCCCc
Q 006979 89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGG--GAFRIFGDTVIFSNYKDQR 166 (623)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~--~~~~~s~d~l~f~~~~~~~ 166 (623)
..+..+.+.|...+.-+.+. +++..|+..+- +.-..+..- .+..+.+ ..|.+.+..++|+.....-
T Consensus 214 ~~I~sv~FHp~~plllvaG~---d~~lrifqvDG----k~N~~lqS~-----~l~~fPi~~a~f~p~G~~~i~~s~rrky 281 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGL---DGTLRIFQVDG----KVNPKLQSI-----HLEKFPIQKAEFAPNGHSVIFTSGRRKY 281 (514)
T ss_pred CCceEEEecCCCceEEEecC---CCcEEEEEecC----ccChhheee-----eeccCccceeeecCCCceEEEecccceE
Confidence 34567777775556656544 47777776652 221122110 0001112 2344444457777666666
Q ss_pred EEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcc
Q 006979 167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFY 246 (623)
Q Consensus 167 l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~ 246 (623)
+|.+|+.+. +..+|.+..+.+......+..||++++|+..-.+ +.|+++...+++. +.. ..-.+.+
T Consensus 282 ~ysyDle~a--k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~---------G~I~lLhakT~el--i~s-~KieG~v 347 (514)
T KOG2055|consen 282 LYSYDLETA--KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN---------GHIHLLHAKTKEL--ITS-FKIEGVV 347 (514)
T ss_pred EEEeecccc--ccccccCCCCcccchhheeEecCCCCeEEEcccC---------ceEEeehhhhhhh--hhe-eeeccEE
Confidence 999999876 6777766533333345568899999988875322 6789888877762 111 1222345
Q ss_pred cceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeee
Q 006979 247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWN 326 (623)
Q Consensus 247 ~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~ 326 (623)
....||.||+.|+... ..+++|++|+..... ..+.+..|. ..-...+-|.+|+++.+... .|.-+
T Consensus 348 ~~~~fsSdsk~l~~~~--------~~GeV~v~nl~~~~~-~~rf~D~G~-----v~gts~~~S~ng~ylA~GS~-~GiVN 412 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASG--------GTGEVYVWNLRQNSC-LHRFVDDGS-----VHGTSLCISLNGSYLATGSD-SGIVN 412 (514)
T ss_pred eeEEEecCCcEEEEEc--------CCceEEEEecCCcce-EEEEeecCc-----cceeeeeecCCCceEEeccC-cceEE
Confidence 6678999998776553 234799999987632 112222221 23346677889973333333 68888
Q ss_pred EEEEe
Q 006979 327 LHKWI 331 (623)
Q Consensus 327 L~~~d 331 (623)
||-.+
T Consensus 413 IYd~~ 417 (514)
T KOG2055|consen 413 IYDGN 417 (514)
T ss_pred Eeccc
Confidence 88643
No 161
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.21 E-value=1.3e-05 Score=86.83 Aligned_cols=134 Identities=13% Similarity=0.074 Sum_probs=86.2
Q ss_pred CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcC---CHHhHHHHcCceEEEEECCCCCC
Q 006979 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL---NLSIQYWTSRGWAFVDVNYGGST 536 (623)
Q Consensus 460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~---~~~~~~~a~~G~~v~~~d~rGs~ 536 (623)
+|-.+.+... .+..+-|.|.... ..+.| ||++||.-....-..+ +....+|+++||.|+++|+||-+
T Consensus 163 Tpg~VV~~~~----~~eLi~Y~P~t~~-----~~~~P-lLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg 232 (532)
T TIGR01838 163 TPGAVVFENE----LFQLIQYEPTTET-----VHKTP-LLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPD 232 (532)
T ss_pred CCCeEEEECC----cEEEEEeCCCCCc-----CCCCc-EEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCCCC
Confidence 4546666543 3555667776521 12344 5668876322221122 36899999999999999999854
Q ss_pred CCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHH-----HHhcC-CCceeEEEecccCCCH
Q 006979 537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTL-----AALAF-RDTFKAGASLYGVSIP 610 (623)
Q Consensus 537 ~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~-----~~~~~-~~~f~a~v~~~g~~d~ 610 (623)
...+.+ .+.....+++.++++++.+. .+.++|.++|||+||.++. +++.+ ++++++++.+....|+
T Consensus 233 ~s~~~~------~~ddY~~~~i~~al~~v~~~--~g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df 304 (532)
T TIGR01838 233 ASQADK------TFDDYIRDGVIAALEVVEAI--TGEKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDF 304 (532)
T ss_pred cccccC------ChhhhHHHHHHHHHHHHHHh--cCCCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCC
Confidence 332211 12223345688889998865 3468999999999999852 23344 7789998888877775
Q ss_pred H
Q 006979 611 V 611 (623)
Q Consensus 611 ~ 611 (623)
.
T Consensus 305 ~ 305 (532)
T TIGR01838 305 S 305 (532)
T ss_pred C
Confidence 4
No 162
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=98.19 E-value=3.1e-05 Score=74.91 Aligned_cols=104 Identities=15% Similarity=0.085 Sum_probs=72.8
Q ss_pred CCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCC
Q 006979 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 571 (623)
Q Consensus 492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~ 571 (623)
+.+..+||-+||.|++.. .|.+..+.|.+.|+.++.+||+|.+-..... ...+.. .+-..-+..|.++=.+
T Consensus 32 gs~~gTVv~~hGsPGSH~--DFkYi~~~l~~~~iR~I~iN~PGf~~t~~~~----~~~~~n---~er~~~~~~ll~~l~i 102 (297)
T PF06342_consen 32 GSPLGTVVAFHGSPGSHN--DFKYIRPPLDEAGIRFIGINYPGFGFTPGYP----DQQYTN---EERQNFVNALLDELGI 102 (297)
T ss_pred CCCceeEEEecCCCCCcc--chhhhhhHHHHcCeEEEEeCCCCCCCCCCCc----ccccCh---HHHHHHHHHHHHHcCC
Confidence 555679999999997765 7888899999999999999999966432211 111222 2233334444444345
Q ss_pred CCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979 572 DEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV 607 (623)
Q Consensus 572 d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~ 607 (623)
+ +++..+|||.|+-.++.++ ++| ..+.+.+.|+
T Consensus 103 ~-~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~ 136 (297)
T PF06342_consen 103 K-GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPP 136 (297)
T ss_pred C-CceEEEEeccchHHHHHHHhcCc--cceEEEecCC
Confidence 4 8999999999999999999 776 3466665553
No 163
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.18 E-value=0.0017 Score=66.63 Aligned_cols=111 Identities=7% Similarity=-0.109 Sum_probs=67.4
Q ss_pred eEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCC--CceEEEEEEecCCCceeeeEEEcCCCCC
Q 006979 221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW--DKAELWVGYISENGDVYKRVCVAGFDPT 298 (623)
Q Consensus 221 ~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~--~~~~L~v~d~~~~~~~~~~~~~~~~~~~ 298 (623)
++++++|.++++. ...+..+. .-.. ..||||+.||....-.+...+ ....|-++|..+... ...+..+.++.
T Consensus 27 ~~v~ViD~~~~~v--~g~i~~G~-~P~~-~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~--~~~i~~p~~p~ 100 (352)
T TIGR02658 27 TQVYTIDGEAGRV--LGMTDGGF-LPNP-VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP--IADIELPEGPR 100 (352)
T ss_pred ceEEEEECCCCEE--EEEEEccC-CCce-eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE--EeEEccCCCch
Confidence 7899999998872 23333332 2222 499999999877641111111 134588889888743 22222222111
Q ss_pred c--cccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEE
Q 006979 299 I--VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL 338 (623)
Q Consensus 299 ~--~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~ 338 (623)
. .........+|||+.+|+++. +....+-++|+.+++..
T Consensus 101 ~~~~~~~~~~~ls~dgk~l~V~n~-~p~~~V~VvD~~~~kvv 141 (352)
T TIGR02658 101 FLVGTYPWMTSLTPDNKTLLFYQF-SPSPAVGVVDLEGKAFV 141 (352)
T ss_pred hhccCccceEEECCCCCEEEEecC-CCCCEEEEEECCCCcEE
Confidence 0 023457889999997777776 45667889999888744
No 164
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=98.17 E-value=5.6e-06 Score=83.54 Aligned_cols=96 Identities=23% Similarity=0.262 Sum_probs=67.2
Q ss_pred HHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHh-CCCCCCCceEEEEcChHHHHHHHHh-
Q 006979 515 LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVG-SGKADEKRLCITGGSAGGYTTLAAL- 592 (623)
Q Consensus 515 ~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~-~~~~d~~rv~i~G~S~GG~~~~~~~- 592 (623)
...+.|.++||+|+++||-|-+. .|.. +.-....+-|.+.|++.+.. .+.-...+|+++|+|.||+.+++++
T Consensus 17 ~~l~~~L~~GyaVv~pDY~Glg~---~y~~---~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~ 90 (290)
T PF03583_consen 17 PFLAAWLARGYAVVAPDYEGLGT---PYLN---GRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAE 90 (290)
T ss_pred HHHHHHHHCCCEEEecCCCCCCC---cccC---cHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHH
Confidence 45677889999999999998554 4422 11112234455555554444 2433347999999999999999877
Q ss_pred c---C-CCc---eeEEEecccCCCHHHhhhh
Q 006979 593 A---F-RDT---FKAGASLYGVSIPVIISEE 616 (623)
Q Consensus 593 ~---~-~~~---f~a~v~~~g~~d~~~~~~~ 616 (623)
. + |++ +.++++..++.|+..++..
T Consensus 91 l~~~YApeL~~~l~Gaa~gg~~~dl~~~~~~ 121 (290)
T PF03583_consen 91 LAPSYAPELNRDLVGAAAGGPPADLAALLRA 121 (290)
T ss_pred HhHHhCcccccceeEEeccCCccCHHHHHhc
Confidence 2 2 665 7999999999999887654
No 165
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=98.16 E-value=4.2e-05 Score=71.92 Aligned_cols=136 Identities=11% Similarity=0.070 Sum_probs=83.1
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCC
Q 006979 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (623)
Q Consensus 471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~ 550 (623)
+|+.|+.|--.|++.. .++.|.||+.-|. +.....|...+.|++..||.|+.+|.-..-| .+-.. +..-.
T Consensus 11 ~~~~I~vwet~P~~~~-----~~~~~tiliA~Gf--~rrmdh~agLA~YL~~NGFhViRyDsl~HvG--lSsG~-I~eft 80 (294)
T PF02273_consen 11 DGRQIRVWETRPKNNE-----PKRNNTILIAPGF--ARRMDHFAGLAEYLSANGFHVIRYDSLNHVG--LSSGD-INEFT 80 (294)
T ss_dssp TTEEEEEEEE---TTS--------S-EEEEE-TT---GGGGGGHHHHHHHHTTT--EEEE---B----------------
T ss_pred CCCEEEEeccCCCCCC-----cccCCeEEEecch--hHHHHHHHHHHHHHhhCCeEEEecccccccc--CCCCC-hhhcc
Confidence 7999999999998743 4567999999887 4445577789999999999999998543111 11000 11111
Q ss_pred ccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCCceeEEEecccCCCHHHhhhhcccc
Q 006979 551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVSIPVIISEELWSI 620 (623)
Q Consensus 551 g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v~~~g~~d~~~~~~~~~~~ 620 (623)
-..-.+|+..+++||.+.| ..+++++-.|.-|-+++..+...+ ..-.|...|++|+..-++..+++
T Consensus 81 ms~g~~sL~~V~dwl~~~g---~~~~GLIAaSLSaRIAy~Va~~i~-lsfLitaVGVVnlr~TLe~al~~ 146 (294)
T PF02273_consen 81 MSIGKASLLTVIDWLATRG---IRRIGLIAASLSARIAYEVAADIN-LSFLITAVGVVNLRDTLEKALGY 146 (294)
T ss_dssp HHHHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTTS---SEEEEES--S-HHHHHHHHHSS
T ss_pred hHHhHHHHHHHHHHHHhcC---CCcchhhhhhhhHHHHHHHhhccC-cceEEEEeeeeeHHHHHHHHhcc
Confidence 1123578999999999887 468999999999999999996654 67778888999998877766554
No 166
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.16 E-value=3.8e-06 Score=78.01 Aligned_cols=120 Identities=13% Similarity=0.037 Sum_probs=79.2
Q ss_pred EEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHH
Q 006979 464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR 543 (623)
Q Consensus 464 i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~ 543 (623)
..++.+ ||..+.+..|+..+ +.+-.+.+-|++ +.....+...++..+.+||.|+..||||.++.-..-.
T Consensus 8 ~~l~~~-DG~~l~~~~~pA~~---------~~~g~~~va~a~-Gv~~~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~ 76 (281)
T COG4757 8 AHLPAP-DGYSLPGQRFPADG---------KASGRLVVAGAT-GVGQYFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASL 76 (281)
T ss_pred cccccC-CCccCccccccCCC---------CCCCcEEecccC-CcchhHhHHHHHHhhccCceEEEEecccccCCCcccc
Confidence 667777 89988887775433 122223334443 2333356678888999999999999999877543322
Q ss_pred HhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCC
Q 006979 544 ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRD 596 (623)
Q Consensus 544 ~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~ 596 (623)
....-.+-.....|+-++++++.+.- ..-....+|||+||.+...+..++.
T Consensus 77 ~~~~~~~~DwA~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL~~~~~k 127 (281)
T COG4757 77 SGSQWRYLDWARLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGLLGQHPK 127 (281)
T ss_pred ccCccchhhhhhcchHHHHHHHHhhC--CCCceEEeeccccceeecccccCcc
Confidence 21111122223678999999998742 2346788999999999888777773
No 167
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=98.15 E-value=1.4e-05 Score=98.63 Aligned_cols=109 Identities=12% Similarity=0.089 Sum_probs=72.3
Q ss_pred CCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCC
Q 006979 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (623)
Q Consensus 494 ~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~ 573 (623)
..|.||++||.+... ..|......|.+ +|.|+.+|+||.|.+...-.............+++.+.+..++++ .+.
T Consensus 1370 ~~~~vVllHG~~~s~--~~w~~~~~~L~~-~~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~--l~~ 1444 (1655)
T PLN02980 1370 EGSVVLFLHGFLGTG--EDWIPIMKAISG-SARCISIDLPGHGGSKIQNHAKETQTEPTLSVELVADLLYKLIEH--ITP 1444 (1655)
T ss_pred CCCeEEEECCCCCCH--HHHHHHHHHHhC-CCEEEEEcCCCCCCCCCccccccccccccCCHHHHHHHHHHHHHH--hCC
Confidence 357899999985443 356666677755 599999999996654321000000001122345555555544443 234
Q ss_pred CceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979 574 KRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV 607 (623)
Q Consensus 574 ~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~ 607 (623)
+++.++||||||.+++.++ .+|++++++|...+.
T Consensus 1445 ~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~ 1479 (1655)
T PLN02980 1445 GKVTLVGYSMGARIALYMALRFSDKIEGAVIISGS 1479 (1655)
T ss_pred CCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCC
Confidence 7999999999999999988 899999999887654
No 168
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.15 E-value=0.0014 Score=64.98 Aligned_cols=224 Identities=13% Similarity=-0.005 Sum_probs=120.7
Q ss_pred EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (623)
Q Consensus 156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~ 235 (623)
.++|......-++++|..++ .....+... ....+|....|||||++|+ +.|+..+. ....|-++|...+
T Consensus 19 avafaRRPG~~~~v~D~~~g-~~~~~~~a~--~gRHFyGHg~fs~dG~~Ly-tTEnd~~~---g~G~IgVyd~~~~---- 87 (305)
T PF07433_consen 19 AVAFARRPGTFALVFDCRTG-QLLQRLWAP--PGRHFYGHGVFSPDGRLLY-TTENDYET---GRGVIGVYDAARG---- 87 (305)
T ss_pred EEEEEeCCCcEEEEEEcCCC-ceeeEEcCC--CCCEEecCEEEcCCCCEEE-EeccccCC---CcEEEEEEECcCC----
Confidence 45665543445889999887 344455543 2346778899999998665 55544221 3478999999843
Q ss_pred ceecccCCCccc---ceeeCCCCCEEEEEEe---cCCC-----C--CCCceEEEEEEecCCCceeeeEEEcCCCCCcccc
Q 006979 236 PKVLVSGSDFYA---FPRMDPRGERMAWIEW---HHPN-----M--PWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 302 (623)
Q Consensus 236 ~~~l~~~~~~~~---~p~wSPDG~~la~~~~---~~~~-----~--p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~ 302 (623)
.+.+.+-..+-. ...|.|||+.|+...- .+|+ + +-=...|..+|..++..+++. .+.... -..+
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~-~Lp~~~--~~lS 164 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQV-ELPPDL--HQLS 164 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeee-ecCccc--cccc
Confidence 333432222212 2469999999986631 1211 0 000234666776666433332 232222 1157
Q ss_pred CcCceeCCCCcEEEEEeCCCCe----ee-EEEEecCCCeEEEEeecccccccccccccC---cceeEEeecCCCCEEEEE
Q 006979 303 PTEPKWSSKGELFFVTDRKNGF----WN-LHKWIESNNEVLAIYSLDAEFSRPLWVFGI---NSYEIIQSHGEKNLIACS 374 (623)
Q Consensus 303 ~~~~~ws~DG~l~~~~~~~~g~----~~-L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~---~~~~~l~~s~~~~~l~~~ 374 (623)
+...+|.+||.++|..+. .|. .- |...+. ++..+.+... ...|.... .+..+. .+++.++++
T Consensus 165 iRHLa~~~~G~V~~a~Q~-qg~~~~~~PLva~~~~-g~~~~~~~~p-----~~~~~~l~~Y~gSIa~~---~~g~~ia~t 234 (305)
T PF07433_consen 165 IRHLAVDGDGTVAFAMQY-QGDPGDAPPLVALHRR-GGALRLLPAP-----EEQWRRLNGYIGSIAAD---RDGRLIAVT 234 (305)
T ss_pred eeeEEecCCCcEEEEEec-CCCCCccCCeEEEEcC-CCcceeccCC-----hHHHHhhCCceEEEEEe---CCCCEEEEE
Confidence 889999999986666655 332 12 233332 2223333211 11121110 123333 266678888
Q ss_pred EEECCeEEEEEEeCCCCceeecccCCcceEee
Q 006979 375 YRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI 406 (623)
Q Consensus 375 ~~~~g~~~L~~~d~~~~~~~~lt~~~~~v~~~ 406 (623)
+-+.+...+| |.+++.+..... ..++..+
T Consensus 235 sPrGg~~~~~--d~~tg~~~~~~~-l~D~cGv 263 (305)
T PF07433_consen 235 SPRGGRVAVW--DAATGRLLGSVP-LPDACGV 263 (305)
T ss_pred CCCCCEEEEE--ECCCCCEeeccc-cCceeee
Confidence 8777766655 877887754322 2345555
No 169
>COG0400 Predicted esterase [General function prediction only]
Probab=98.14 E-value=7.9e-06 Score=77.33 Aligned_cols=113 Identities=18% Similarity=0.088 Sum_probs=71.6
Q ss_pred CCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHH-------HHHHHHHH
Q 006979 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVN-------DCCSCATF 564 (623)
Q Consensus 492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~-------D~~~~~~~ 564 (623)
+...|+||++||-+ .....+....+...-+ +.++.++-+=.-..+..|.. ...-+..+.+ .+.+.++.
T Consensus 15 ~p~~~~iilLHG~G--gde~~~~~~~~~~~P~-~~~is~rG~v~~~g~~~~f~--~~~~~~~d~edl~~~~~~~~~~l~~ 89 (207)
T COG0400 15 DPAAPLLILLHGLG--GDELDLVPLPELILPN-ATLVSPRGPVAENGGPRFFR--RYDEGSFDQEDLDLETEKLAEFLEE 89 (207)
T ss_pred CCCCcEEEEEecCC--CChhhhhhhhhhcCCC-CeEEcCCCCccccCccccee--ecCCCccchhhHHHHHHHHHHHHHH
Confidence 45678999999983 4444444433333333 55555543322111111111 1112222333 34455666
Q ss_pred HHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979 565 LVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI 609 (623)
Q Consensus 565 l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d 609 (623)
+.++..+|++|+.+.|+|.|+.+++.++ ++++.|+++|.+.|..=
T Consensus 90 ~~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~ 135 (207)
T COG0400 90 LAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLP 135 (207)
T ss_pred HHHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCC
Confidence 6667779999999999999999999999 89999999999988653
No 170
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=98.11 E-value=1.4e-05 Score=89.30 Aligned_cols=99 Identities=14% Similarity=0.050 Sum_probs=68.2
Q ss_pred CCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchh-HHHh----hc--------------cCCccch
Q 006979 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE-FRER----LL--------------GRWGIVD 554 (623)
Q Consensus 494 ~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~-~~~~----~~--------------~~~g~~~ 554 (623)
..|+||++||-. .....|...+..|+++||.|+++|+||.|..... .... .. ++--.+.
T Consensus 448 g~P~VVllHG~~--g~~~~~~~lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~rQ~ 525 (792)
T TIGR03502 448 GWPVVIYQHGIT--GAKENALAFAGTLAAAGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARDNLRQS 525 (792)
T ss_pred CCcEEEEeCCCC--CCHHHHHHHHHHHHhCCcEEEEeCCCCCCccccccccccccccccCccceeccccccccccCHHHH
Confidence 468999999973 3334567788899999999999999997654221 0000 00 0011234
Q ss_pred HHHHHHHHHHHH------hC----CCCCCCceEEEEcChHHHHHHHHhcC
Q 006979 555 VNDCCSCATFLV------GS----GKADEKRLCITGGSAGGYTTLAALAF 594 (623)
Q Consensus 555 ~~D~~~~~~~l~------~~----~~~d~~rv~i~G~S~GG~~~~~~~~~ 594 (623)
+.|+......+. ++ +..+..+|.++||||||.+.+..+.+
T Consensus 526 v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~ 575 (792)
T TIGR03502 526 ILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAY 575 (792)
T ss_pred HHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHh
Confidence 678887777776 21 23667899999999999999988843
No 171
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.10 E-value=0.002 Score=61.39 Aligned_cols=192 Identities=13% Similarity=0.148 Sum_probs=110.3
Q ss_pred EEEEeCCCCcEEEEeCCCCCC--CceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc
Q 006979 157 VIFSNYKDQRLYKHSIDSKDS--SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (623)
Q Consensus 157 l~f~~~~~~~l~~~d~~~g~~--~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~ 234 (623)
++.+...+..|.++++.+++. -...|... -.-.....+|||.|++|+..+.|.. ..||. -.+++.+
T Consensus 29 ilAscg~Dk~vriw~~~~~~s~~ck~vld~~---hkrsVRsvAwsp~g~~La~aSFD~t-------~~Iw~--k~~~efe 96 (312)
T KOG0645|consen 29 ILASCGTDKAVRIWSTSSGDSWTCKTVLDDG---HKRSVRSVAWSPHGRYLASASFDAT-------VVIWK--KEDGEFE 96 (312)
T ss_pred EEEeecCCceEEEEecCCCCcEEEEEecccc---chheeeeeeecCCCcEEEEeeccce-------EEEee--cCCCcee
Confidence 555555565677777654311 01122221 1123456889999998888776532 23332 2334322
Q ss_pred cceecccCCC-cccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc
Q 006979 235 EPKVLVSGSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 313 (623)
Q Consensus 235 ~~~~l~~~~~-~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~ 313 (623)
-+..| +|.+ -+-..+||++|.+||-.+.+.+ +|+..++++++..-.-++.+.. +.+....|.|--.
T Consensus 97 cv~~l-EGHEnEVK~Vaws~sG~~LATCSRDKS--------VWiWe~deddEfec~aVL~~Ht----qDVK~V~WHPt~d 163 (312)
T KOG0645|consen 97 CVATL-EGHENEVKCVAWSASGNYLATCSRDKS--------VWIWEIDEDDEFECIAVLQEHT----QDVKHVIWHPTED 163 (312)
T ss_pred EEeee-eccccceeEEEEcCCCCEEEEeeCCCe--------EEEEEecCCCcEEEEeeecccc----ccccEEEEcCCcc
Confidence 22223 3433 2345689999999998875554 8888888776544455566655 5678899999655
Q ss_pred EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEE
Q 006979 314 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI 385 (623)
Q Consensus 314 l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~ 385 (623)
|+|.... ++.-++|+-++ .+....+..-+.. ..-.|.. .|- +.|.+++-.+ +++...||+
T Consensus 164 lL~S~SY-DnTIk~~~~~~-dddW~c~~tl~g~-~~TVW~~-----~F~---~~G~rl~s~s-dD~tv~Iw~ 223 (312)
T KOG0645|consen 164 LLFSCSY-DNTIKVYRDED-DDDWECVQTLDGH-ENTVWSL-----AFD---NIGSRLVSCS-DDGTVSIWR 223 (312)
T ss_pred eeEEecc-CCeEEEEeecC-CCCeeEEEEecCc-cceEEEE-----Eec---CCCceEEEec-CCcceEeee
Confidence 8877766 56677887665 4444433322111 1134442 222 1455555444 577778887
No 172
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=98.09 E-value=0.00042 Score=69.71 Aligned_cols=208 Identities=10% Similarity=0.010 Sum_probs=119.8
Q ss_pred EEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccce
Q 006979 158 IFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK 237 (623)
Q Consensus 158 ~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~ 237 (623)
+.+...||.+-++++++. .....|+.. ..|+...+|+|+|++|.-.+-|+. .+|| |+.++. .-
T Consensus 234 lat~s~Dgtvklw~~~~e-~~l~~l~gH----~~RVs~VafHPsG~~L~TasfD~t-------WRlW--D~~tk~---El 296 (459)
T KOG0272|consen 234 LATASADGTVKLWKLSQE-TPLQDLEGH----LARVSRVAFHPSGKFLGTASFDST-------WRLW--DLETKS---EL 296 (459)
T ss_pred eeeeccCCceeeeccCCC-cchhhhhcc----hhhheeeeecCCCceeeecccccc-------hhhc--ccccch---hh
Confidence 445556777666666542 234555543 578889999999999988877653 3344 787775 33
Q ss_pred ecccCC-CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEE
Q 006979 238 VLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF 316 (623)
Q Consensus 238 ~l~~~~-~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~ 316 (623)
.+.+|. .-+...+|-|||.-++--..|. -.+ +.|+.++. ....+.+.- ..+..+.|+|+|..+.
T Consensus 297 L~QEGHs~~v~~iaf~~DGSL~~tGGlD~------~~R--vWDlRtgr---~im~L~gH~----k~I~~V~fsPNGy~lA 361 (459)
T KOG0272|consen 297 LLQEGHSKGVFSIAFQPDGSLAATGGLDS------LGR--VWDLRTGR---CIMFLAGHI----KEILSVAFSPNGYHLA 361 (459)
T ss_pred HhhcccccccceeEecCCCceeeccCccc------hhh--eeecccCc---EEEEecccc----cceeeEeECCCceEEe
Confidence 333443 3355688999999444222222 233 44777762 344555554 4567899999997443
Q ss_pred EEeCCCCeeeEEEEecCCCe-EEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceee
Q 006979 317 VTDRKNGFWNLHKWIESNNE-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSL 395 (623)
Q Consensus 317 ~~~~~~g~~~L~~~d~~~~~-~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~ 395 (623)
.... ++..++|.+. ... ...+......+....+++ ..+.++++..-++..+||.- .....++.
T Consensus 362 Tgs~-Dnt~kVWDLR--~r~~ly~ipAH~nlVS~Vk~~p------------~~g~fL~TasyD~t~kiWs~-~~~~~~ks 425 (459)
T KOG0272|consen 362 TGSS-DNTCKVWDLR--MRSELYTIPAHSNLVSQVKYSP------------QEGYFLVTASYDNTVKIWST-RTWSPLKS 425 (459)
T ss_pred ecCC-CCcEEEeeec--ccccceecccccchhhheEecc------------cCCeEEEEcccCcceeeecC-CCcccchh
Confidence 3333 4666766443 222 222222222223332222 56778888888888888743 22233455
Q ss_pred cccCCcceEee--eecCCEE
Q 006979 396 LDIPFTDIDNI--TLGNDCL 413 (623)
Q Consensus 396 lt~~~~~v~~~--~~~~~~~ 413 (623)
|.....-|-++ ++++..+
T Consensus 426 LaGHe~kV~s~Dis~d~~~i 445 (459)
T KOG0272|consen 426 LAGHEGKVISLDISPDSQAI 445 (459)
T ss_pred hcCCccceEEEEeccCCceE
Confidence 65555556555 4444433
No 173
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=98.08 E-value=4e-06 Score=93.18 Aligned_cols=128 Identities=20% Similarity=0.228 Sum_probs=87.9
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC---cCCHHhHHHHcCceEEEEECCC-CCCCCchhHHHhhcc
Q 006979 473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG---ILNLSIQYWTSRGWAFVDVNYG-GSTGYGREFRERLLG 548 (623)
Q Consensus 473 ~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~---~~~~~~~~~a~~G~~v~~~d~r-Gs~~~g~~~~~~~~~ 548 (623)
..++.-+|.|.... ..+ .|++|++|||....... ........+..+..+|+.++|| |.-|+...-.+...+
T Consensus 95 DCLylNV~tp~~~~----~~~-~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d~~~~g 169 (545)
T KOG1516|consen 95 DCLYLNVYTPQGCS----ESK-LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGPLGFLSTGDSAAPG 169 (545)
T ss_pred CCceEEEeccCCCc----cCC-CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEecccceeceeeecCCCCCCC
Confidence 45888889997621 012 89999999995332221 1223344456678999999999 322322221122245
Q ss_pred CCccchHHHHHHHHHHHHhC---CCCCCCceEEEEcChHHHHHHHHhcC---CCceeEEEecccCC
Q 006979 549 RWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGVS 608 (623)
Q Consensus 549 ~~g~~~~~D~~~~~~~l~~~---~~~d~~rv~i~G~S~GG~~~~~~~~~---~~~f~a~v~~~g~~ 608 (623)
++| ..|++.|++|+.++ -.-||++|-|+|+|+||..+..++.- ..+|+.+|+.+|..
T Consensus 170 N~g---l~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~~ 232 (545)
T KOG1516|consen 170 NLG---LFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGNA 232 (545)
T ss_pred ccc---HHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhcccc
Confidence 555 66999999999874 12699999999999999999877732 46899999888863
No 174
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=98.07 E-value=0.0008 Score=66.58 Aligned_cols=167 Identities=14% Similarity=0.084 Sum_probs=91.4
Q ss_pred CceEEEeCC--EEEEEe--CCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeE
Q 006979 147 GGAFRIFGD--TVIFSN--YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE 222 (623)
Q Consensus 147 ~~~~~~s~d--~l~f~~--~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~ 222 (623)
..+.+++.| .++++. .....||+...++. .+.+.. ...+..|+|+++|..+++...+. . ..
T Consensus 26 ~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~---~~~~~~-----g~~l~~PS~d~~g~~W~v~~~~~-~------~~ 90 (253)
T PF10647_consen 26 VTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP---VRPVLT-----GGSLTRPSWDPDGWVWTVDDGSG-G------VR 90 (253)
T ss_pred ccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc---ceeecc-----CCccccccccCCCCEEEEEcCCC-c------eE
Confidence 344555544 677776 44556998876543 444433 23577899999976554433221 1 22
Q ss_pred EEEEEcCCCCcccceecccC-CC-cccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCC--C-c--ee-eeEEEcC
Q 006979 223 IVAIALNGQNIQEPKVLVSG-SD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN--G-D--VY-KRVCVAG 294 (623)
Q Consensus 223 L~~idl~~g~~~~~~~l~~~-~~-~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~--~-~--~~-~~~~~~~ 294 (623)
+++ +..++... ...+... .. .+...++||||.++|++..+. ...+|++.-+..+ + . +. ...+...
T Consensus 91 ~~~-~~~~g~~~-~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~-----~~~~v~va~V~r~~~g~~~~l~~~~~~~~~ 163 (253)
T PF10647_consen 91 VVR-DSASGTGE-PVEVDWPGLRGRITALRVSPDGTRVAVVVEDG-----GGGRVYVAGVVRDGDGVPRRLTGPRRVAPP 163 (253)
T ss_pred EEE-ecCCCcce-eEEecccccCCceEEEEECCCCcEEEEEEecC-----CCCeEEEEEEEeCCCCCcceeccceEeccc
Confidence 332 33333311 2222211 11 456688999999999998554 2566888766533 3 1 11 1122222
Q ss_pred CCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEE
Q 006979 295 FDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAI 340 (623)
Q Consensus 295 ~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l 340 (623)
.. ..+....|.++++|+++.....+.... .+..+++..+.+
T Consensus 164 ~~----~~v~~v~W~~~~~L~V~~~~~~~~~~~-~v~~dG~~~~~l 204 (253)
T PF10647_consen 164 LL----SDVTDVAWSDDSTLVVLGRSAGGPVVR-LVSVDGGPSTPL 204 (253)
T ss_pred cc----CcceeeeecCCCEEEEEeCCCCCceeE-EEEccCCccccc
Confidence 12 355689999999977776652222222 355556655555
No 175
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=98.07 E-value=0.001 Score=65.80 Aligned_cols=194 Identities=13% Similarity=0.076 Sum_probs=102.1
Q ss_pred CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCC
Q 006979 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD 244 (623)
Q Consensus 165 ~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~ 244 (623)
|+|++++- + ..+++.............+++||||+.++++..... ...|++...++.. +.+..+.
T Consensus 2 G~l~~~~~--~--~~~pv~g~~~~~~~~~~s~AvS~dg~~~A~v~~~~~------~~~L~~~~~~~~~----~~~~~g~- 66 (253)
T PF10647_consen 2 GQLVRVSG--G--GVTPVPGALGEGGYDVTSPAVSPDGSRVAAVSEGDG------GRSLYVGPAGGPV----RPVLTGG- 66 (253)
T ss_pred CcEEEecC--C--ceeECCCCcCcCCccccceEECCCCCeEEEEEEcCC------CCEEEEEcCCCcc----eeeccCC-
Confidence 45655432 2 344554432111234667899999999999983222 2779999876553 4443443
Q ss_pred cccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCC
Q 006979 245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNG 323 (623)
Q Consensus 245 ~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g 323 (623)
-...|.|++||. +.... +.. ....+.. +...+.. ....+..... . ..+..+++||||. ++++... .+
T Consensus 67 ~l~~PS~d~~g~-~W~v~-~~~----~~~~~~~-~~~~g~~-~~~~v~~~~~-~--~~I~~l~vSpDG~RvA~v~~~-~~ 134 (253)
T PF10647_consen 67 SLTRPSWDPDGW-VWTVD-DGS----GGVRVVR-DSASGTG-EPVEVDWPGL-R--GRITALRVSPDGTRVAVVVED-GG 134 (253)
T ss_pred ccccccccCCCC-EEEEE-cCC----CceEEEE-ecCCCcc-eeEEeccccc-C--CceEEEEECCCCcEEEEEEec-CC
Confidence 456799999976 44343 222 1222332 2222211 1222222111 0 2577899999999 8877765 34
Q ss_pred eeeEEEEe--cC-CCeEEEEe-------ecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCce
Q 006979 324 FWNLHKWI--ES-NNEVLAIY-------SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL 393 (623)
Q Consensus 324 ~~~L~~~d--~~-~~~~~~l~-------~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~ 393 (623)
..+|+..- .+ .+..+.+. .....+....|. ++..|++.....+......+..+++..
T Consensus 135 ~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~-------------~~~~L~V~~~~~~~~~~~~v~~dG~~~ 201 (253)
T PF10647_consen 135 GGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS-------------DDSTLVVLGRSAGGPVVRLVSVDGGPS 201 (253)
T ss_pred CCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec-------------CCCEEEEEeCCCCCceeEEEEccCCcc
Confidence 45666432 22 23122222 112234445665 445555555444433332566777777
Q ss_pred eeccc
Q 006979 394 SLLDI 398 (623)
Q Consensus 394 ~~lt~ 398 (623)
+.++.
T Consensus 202 ~~l~~ 206 (253)
T PF10647_consen 202 TPLPS 206 (253)
T ss_pred cccCC
Confidence 77643
No 176
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.07 E-value=0.0026 Score=75.44 Aligned_cols=247 Identities=12% Similarity=0.099 Sum_probs=130.2
Q ss_pred CCEEEEEeCCCCcEEEEeCCCCCCCceecCC-CC-CC--------CCeeecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 006979 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITP-DY-GE--------PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (623)
Q Consensus 154 ~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~-~~-~~--------~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L 223 (623)
++.+++++...++|+++|+++. ....+.. +. +. ...+-...+++++++.|++....+ ..|
T Consensus 579 ~g~lyVaDs~n~rI~v~d~~G~--~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n--------~~I 648 (1057)
T PLN02919 579 NNRLFISDSNHNRIVVTDLDGN--FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN--------HAL 648 (1057)
T ss_pred CCeEEEEECCCCeEEEEeCCCC--EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC--------ceE
Confidence 4578888888888999998753 2222221 10 00 001223566888887665443221 568
Q ss_pred EEEEcCCCCcccceecccCC--------------Cccc---ceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCce
Q 006979 224 VAIALNGQNIQEPKVLVSGS--------------DFYA---FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV 286 (623)
Q Consensus 224 ~~idl~~g~~~~~~~l~~~~--------------~~~~---~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~ 286 (623)
.++|+.++. ++.+.... .... ..+++|++..|++.... ..+|++++..++.
T Consensus 649 r~id~~~~~---V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-------~~~I~v~d~~~g~-- 716 (1057)
T PLN02919 649 REIDFVNET---VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-------QHQIWEYNISDGV-- 716 (1057)
T ss_pred EEEecCCCE---EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-------CCeEEEEECCCCe--
Confidence 889988876 55553210 0112 34699977777665422 3458888876551
Q ss_pred eeeEEEcCCC---------C--CccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeeccc-------ccc
Q 006979 287 YKRVCVAGFD---------P--TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA-------EFS 348 (623)
Q Consensus 287 ~~~~~~~~~~---------~--~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~-------~~~ 348 (623)
...+.+.. . .-...+..+.++|||+.+|+++. +..+|.++|++++..+.+..... .++
T Consensus 717 --v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs--~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG 792 (1057)
T PLN02919 717 --TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS--ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFG 792 (1057)
T ss_pred --EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC--CCCeEEEEECCCCcEEEEEecccccCccccccc
Confidence 11221110 0 00023456789999985666776 45678899988776544432110 011
Q ss_pred c---c---cccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCC--------------cceEee--
Q 006979 349 R---P---LWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF--------------TDIDNI-- 406 (623)
Q Consensus 349 ~---~---~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~--------------~~v~~~-- 406 (623)
. + ........+.+. ++| .+|++. .+..+|.++|.+++.+..+.... ..-.++
T Consensus 793 ~~dG~g~~~~l~~P~Gvavd---~dG-~LYVAD--s~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIav 866 (1057)
T PLN02919 793 DHDGVGSEVLLQHPLGVLCA---KDG-QIYVAD--SYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLAL 866 (1057)
T ss_pred CCCCchhhhhccCCceeeEe---CCC-cEEEEE--CCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEE
Confidence 0 0 000111233343 244 466654 34456888898888776543210 011223
Q ss_pred eecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979 407 TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (623)
Q Consensus 407 ~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~ 436 (623)
++++ ++|+.-. ....|.++++++++.
T Consensus 867 d~dG-~lyVaDt---~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 867 GENG-RLFVADT---NNSLIRYLDLNKGEA 892 (1057)
T ss_pred eCCC-CEEEEEC---CCCEEEEEECCCCcc
Confidence 4444 4544322 223677888877754
No 177
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.03 E-value=0.0042 Score=59.54 Aligned_cols=228 Identities=11% Similarity=0.056 Sum_probs=123.4
Q ss_pred EEEEEeCCCCcEEEEeCCCCC----CCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 006979 156 TVIFSNYKDQRLYKHSIDSKD----SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ 231 (623)
Q Consensus 156 ~l~f~~~~~~~l~~~d~~~g~----~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g 231 (623)
.++++...|..+.++++...+ ...+.++.. ..+..+..+++||++.+-..+| ..|.+.|+.+|
T Consensus 29 ~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GH----sH~v~dv~~s~dg~~alS~swD---------~~lrlWDl~~g 95 (315)
T KOG0279|consen 29 DILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGH----SHFVSDVVLSSDGNFALSASWD---------GTLRLWDLATG 95 (315)
T ss_pred ceEEEcccceEEEEEEeccCccccCceeeeeecc----ceEecceEEccCCceEEecccc---------ceEEEEEecCC
Confidence 456666666666666665321 123555543 5678899999999987766665 56888899998
Q ss_pred Ccccceec-ccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCC
Q 006979 232 NIQEPKVL-VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS 310 (623)
Q Consensus 232 ~~~~~~~l-~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~ 310 (623)
+ .++. .....-+...++|||.++|+--+.|. .|.+++.-++. ...+..+.+. ..+.-++|+|
T Consensus 96 ~---~t~~f~GH~~dVlsva~s~dn~qivSGSrDk--------Tiklwnt~g~c---k~t~~~~~~~---~WVscvrfsP 158 (315)
T KOG0279|consen 96 E---STRRFVGHTKDVLSVAFSTDNRQIVSGSRDK--------TIKLWNTLGVC---KYTIHEDSHR---EWVSCVRFSP 158 (315)
T ss_pred c---EEEEEEecCCceEEEEecCCCceeecCCCcc--------eeeeeeecccE---EEEEecCCCc---CcEEEEEEcC
Confidence 6 4444 43334456688999999987443332 36677766552 2222233211 4567889999
Q ss_pred CCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecc-cccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeC
Q 006979 311 KGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLD-AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (623)
Q Consensus 311 DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~-~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~ 388 (623)
... .++++...++. +-.+|+++-+.+.-..+. ..+ +...+. ||| .+..+..++|..- +.|+
T Consensus 159 ~~~~p~Ivs~s~Dkt--vKvWnl~~~~l~~~~~gh~~~v---------~t~~vS---pDG-slcasGgkdg~~~--LwdL 221 (315)
T KOG0279|consen 159 NESNPIIVSASWDKT--VKVWNLRNCQLRTTFIGHSGYV---------NTVTVS---PDG-SLCASGGKDGEAM--LWDL 221 (315)
T ss_pred CCCCcEEEEccCCce--EEEEccCCcchhhccccccccE---------EEEEEC---CCC-CEEecCCCCceEE--EEEc
Confidence 864 44444331333 444566665544333221 111 122232 355 4554554555544 4565
Q ss_pred CCCce-eecccCCcceEee-eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979 389 FGHSL-SLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (623)
Q Consensus 389 ~~~~~-~~lt~~~~~v~~~-~~~~~~~~~~~~s~~~~~~ly~~~l~~~~ 435 (623)
+.++- ..+.. ...+.++ .....+.++.+.. ..|-..+++++.
T Consensus 222 ~~~k~lysl~a-~~~v~sl~fspnrywL~~at~----~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 222 NEGKNLYSLEA-FDIVNSLCFSPNRYWLCAATA----TSIKIWDLESKA 265 (315)
T ss_pred cCCceeEeccC-CCeEeeEEecCCceeEeeccC----CceEEEeccchh
Confidence 54433 33322 2335555 3333333333322 236666777664
No 178
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.02 E-value=9.1e-05 Score=74.07 Aligned_cols=198 Identities=11% Similarity=0.020 Sum_probs=109.9
Q ss_pred ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCc
Q 006979 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 272 (623)
Q Consensus 193 ~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~ 272 (623)
+.-..||++|++|+-.+.+.. .-+|.+..++. .+-...+......+....||||.++|.-...++
T Consensus 227 VWfl~FS~nGkyLAsaSkD~T-------aiiw~v~~d~~-~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e------- 291 (519)
T KOG0293|consen 227 VWFLQFSHNGKYLASASKDST-------AIIWIVVYDVH-FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE------- 291 (519)
T ss_pred EEEEEEcCCCeeEeeccCCce-------EEEEEEecCcc-eeeeeeeecccCceEEEEECCCCCeEEecCchH-------
Confidence 334679999999987665532 34666665554 111344555556677789999999997665333
Q ss_pred eEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccc
Q 006979 273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLW 352 (623)
Q Consensus 273 ~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w 352 (623)
.+++.|++++. ........- + .++..-+|-|||.-+++... ...++.+|.++.....-. .+..|.
T Consensus 292 -~~~lwDv~tgd---~~~~y~~~~-~--~S~~sc~W~pDg~~~V~Gs~---dr~i~~wdlDgn~~~~W~----gvr~~~- 356 (519)
T KOG0293|consen 292 -VLSLWDVDTGD---LRHLYPSGL-G--FSVSSCAWCPDGFRFVTGSP---DRTIIMWDLDGNILGNWE----GVRDPK- 356 (519)
T ss_pred -heeeccCCcch---hhhhcccCc-C--CCcceeEEccCCceeEecCC---CCcEEEecCCcchhhccc----ccccce-
Confidence 27888888873 222222221 2 57788999999973322222 246777887665421111 001110
Q ss_pred cccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCcceEee--eecCCEEEEEEecCCCCCeEEEEE
Q 006979 353 VFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVT 430 (623)
Q Consensus 353 ~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~ 430 (623)
...+.. ++||++++.... ..++..++.++..-+-+-.....+.++ +.+++.+++.-. +..+...|
T Consensus 357 ---v~dlai---t~Dgk~vl~v~~---d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~----~qei~LWD 423 (519)
T KOG0293|consen 357 ---VHDLAI---TYDGKYVLLVTV---DKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQ----DQEIHLWD 423 (519)
T ss_pred ---eEEEEE---cCCCcEEEEEec---ccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcc----cCeeEEee
Confidence 112222 338888776652 345666676655444233333345544 555554444332 24566667
Q ss_pred cCC
Q 006979 431 LDD 433 (623)
Q Consensus 431 l~~ 433 (623)
++.
T Consensus 424 l~e 426 (519)
T KOG0293|consen 424 LEE 426 (519)
T ss_pred cch
Confidence 664
No 179
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.02 E-value=0.00027 Score=71.77 Aligned_cols=201 Identities=11% Similarity=0.062 Sum_probs=117.1
Q ss_pred CCceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEE
Q 006979 146 GGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (623)
Q Consensus 146 g~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~ 224 (623)
++.+..+.+. .++.+...++.+-++.+++. .-..|+.-. ..........|.|+|+..+++.... -.+|
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk--~N~~lqS~~-l~~fPi~~a~f~p~G~~~i~~s~rr--------ky~y 283 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGK--VNPKLQSIH-LEKFPIQKAEFAPNGHSVIFTSGRR--------KYLY 283 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCc--cChhheeee-eccCccceeeecCCCceEEEecccc--------eEEE
Confidence 4566666666 67778777876555555543 223444320 0011123456999999777765532 6799
Q ss_pred EEEcCCCCcccceecccC-CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccC
Q 006979 225 AIALNGQNIQEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP 303 (623)
Q Consensus 225 ~idl~~g~~~~~~~l~~~-~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 303 (623)
.+|+.+.+++++.++..- ..+.-..+.|||++.|++... .+-|+++...++.- +.... ..+.+
T Consensus 284 syDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~--------~G~I~lLhakT~el------i~s~K--ieG~v 347 (514)
T KOG2055|consen 284 SYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN--------NGHIHLLHAKTKEL------ITSFK--IEGVV 347 (514)
T ss_pred EeeccccccccccCCCCcccchhheeEecCCCCeEEEccc--------CceEEeehhhhhhh------hheee--eccEE
Confidence 999999884333333221 123444568999999887752 34588887766522 11111 11567
Q ss_pred cCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEE
Q 006979 304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL 383 (623)
Q Consensus 304 ~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L 383 (623)
..+.|+.||+.++++.. .| ++|.+|+...........+..+.+ .++... .++. ++.+....|..+|
T Consensus 348 ~~~~fsSdsk~l~~~~~-~G--eV~v~nl~~~~~~~rf~D~G~v~g-------ts~~~S---~ng~-ylA~GS~~GiVNI 413 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASGG-TG--EVYVWNLRQNSCLHRFVDDGSVHG-------TSLCIS---LNGS-YLATGSDSGIVNI 413 (514)
T ss_pred eeEEEecCCcEEEEEcC-Cc--eEEEEecCCcceEEEEeecCccce-------eeeeec---CCCc-eEEeccCcceEEE
Confidence 78999999995555543 34 899999877653333222222222 223322 1444 4445557888888
Q ss_pred EEEe
Q 006979 384 GILD 387 (623)
Q Consensus 384 ~~~d 387 (623)
|-.+
T Consensus 414 Yd~~ 417 (514)
T KOG2055|consen 414 YDGN 417 (514)
T ss_pred eccc
Confidence 8654
No 180
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.02 E-value=0.0027 Score=60.82 Aligned_cols=253 Identities=11% Similarity=0.038 Sum_probs=130.9
Q ss_pred cCCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCCC
Q 006979 87 ASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQ 165 (623)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~ 165 (623)
.+..+..+..+|++.|||.. ++...|=+.++.+|...+.-++.+... ..+.+.+| ...|.+ ...
T Consensus 60 ~G~ap~dvapapdG~VWft~-----qg~gaiGhLdP~tGev~~ypLg~Ga~P---------hgiv~gpdg~~Witd-~~~ 124 (353)
T COG4257 60 NGSAPFDVAPAPDGAVWFTA-----QGTGAIGHLDPATGEVETYPLGSGASP---------HGIVVGPDGSAWITD-TGL 124 (353)
T ss_pred CCCCccccccCCCCceEEec-----CccccceecCCCCCceEEEecCCCCCC---------ceEEECCCCCeeEec-Ccc
Confidence 44555666766677788876 455567778877652222223332111 12333344 333443 333
Q ss_pred cEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCc
Q 006979 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF 245 (623)
Q Consensus 166 ~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~ 245 (623)
.|-++|.++. +.+..+-..+......+...|+++|+ |.|+.... .--++|...+. +++......+
T Consensus 125 aI~R~dpkt~--evt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q~G---------~yGrLdPa~~~---i~vfpaPqG~ 189 (353)
T COG4257 125 AIGRLDPKTL--EVTRFPLPLEHADANLETAVFDPWGN-LWFTGQIG---------AYGRLDPARNV---ISVFPAPQGG 189 (353)
T ss_pred eeEEecCccc--ceEEeecccccCCCcccceeeCCCcc-EEEeeccc---------cceecCcccCc---eeeeccCCCC
Confidence 5888888776 45444332223345567788999996 55554422 11255665554 3333221111
Q ss_pred -ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeC-CCCcEEEEEeCCCC
Q 006979 246 -YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS-SKGELFFVTDRKNG 323 (623)
Q Consensus 246 -~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws-~DG~l~~~~~~~~g 323 (623)
-.+.+-.|||. +.|.+.- .+.|-++|...+. ..++...++. ..-.+-.|+ |.| -++++.. +
T Consensus 190 gpyGi~atpdGs-vwyasla-------gnaiaridp~~~~----aev~p~P~~~--~~gsRriwsdpig-~~wittw--g 252 (353)
T COG4257 190 GPYGICATPDGS-VWYASLA-------GNAIARIDPFAGH----AEVVPQPNAL--KAGSRRIWSDPIG-RAWITTW--G 252 (353)
T ss_pred CCcceEECCCCc-EEEEecc-------ccceEEcccccCC----cceecCCCcc--cccccccccCccC-cEEEecc--C
Confidence 23467899998 7776532 2336666655441 2222222210 111233454 334 5667765 6
Q ss_pred eeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccC
Q 006979 324 FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP 399 (623)
Q Consensus 324 ~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~ 399 (623)
...|+++|++...++...-.... + ...++.+ |....+|.++. +...|.++|..+.+.+.+..+
T Consensus 253 ~g~l~rfdPs~~sW~eypLPgs~---a----rpys~rV-----D~~grVW~sea-~agai~rfdpeta~ftv~p~p 315 (353)
T COG4257 253 TGSLHRFDPSVTSWIEYPLPGSK---A----RPYSMRV-----DRHGRVWLSEA-DAGAIGRFDPETARFTVLPIP 315 (353)
T ss_pred CceeeEeCcccccceeeeCCCCC---C----Ccceeee-----ccCCcEEeecc-ccCceeecCcccceEEEecCC
Confidence 77899999988766554311100 0 0011122 44555555542 334577888877777666554
No 181
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=98.01 E-value=3.4e-05 Score=75.57 Aligned_cols=138 Identities=14% Similarity=0.153 Sum_probs=93.8
Q ss_pred CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (623)
Q Consensus 460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g 539 (623)
..+...+++. ||.+|...+...... +. +...-+|+++.|..+.-...-++ .=++.||.|+-.|.+|-+|+.
T Consensus 213 NG~R~kiks~-dgneiDtmF~d~r~n--~~--~ngq~LvIC~EGNAGFYEvG~m~----tP~~lgYsvLGwNhPGFagST 283 (517)
T KOG1553|consen 213 NGQRLKIKSS-DGNEIDTMFLDGRPN--QS--GNGQDLVICFEGNAGFYEVGVMN----TPAQLGYSVLGWNHPGFAGST 283 (517)
T ss_pred CCeEEEEeec-CCcchhheeecCCCC--CC--CCCceEEEEecCCccceEeeeec----ChHHhCceeeccCCCCccccC
Confidence 3456677776 888888766644320 01 22234777777763222222222 225679999999999865532
Q ss_pred hhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHHhh
Q 006979 540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVIIS 614 (623)
Q Consensus 540 ~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~~ 614 (623)
.- -+...+...+.+++++.++.=...++.|.+.|+|.|||.+++++ .+|| ++|+|..+-+.|+.-++
T Consensus 284 G~-------P~p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDDllpLA 351 (517)
T KOG1553|consen 284 GL-------PYPVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDDLLPLA 351 (517)
T ss_pred CC-------CCcccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhhhhhHH
Confidence 21 13345566777888888875445689999999999999999999 7887 79999999999986553
No 182
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.98 E-value=0.0025 Score=68.73 Aligned_cols=144 Identities=17% Similarity=0.170 Sum_probs=92.9
Q ss_pred CCceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEE
Q 006979 146 GGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (623)
Q Consensus 146 g~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~ 224 (623)
|...+.+... .++++...||.+..+|+.-. ..-|.+|.+ .+.++.-.+.+|.|..+.+-..++ .+|+
T Consensus 394 ~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-rNfRTft~P---~p~QfscvavD~sGelV~AG~~d~--------F~If 461 (893)
T KOG0291|consen 394 GVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-RNFRTFTSP---EPIQFSCVAVDPSGELVCAGAQDS--------FEIF 461 (893)
T ss_pred ceEEEEEEecCCEEEEeecCCeEEeeeeccc-ceeeeecCC---CceeeeEEEEcCCCCEEEeeccce--------EEEE
Confidence 4444555433 67777778999999999754 234556553 256777888899997655544443 7899
Q ss_pred EEEcCCCCcccceecccCC-CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCC-CceeeeEEEcCCCCCcccc
Q 006979 225 AIALNGQNIQEPKVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN-GDVYKRVCVAGFDPTIVES 302 (623)
Q Consensus 225 ~idl~~g~~~~~~~l~~~~-~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~-~~~~~~~~~~~~~~~~~~~ 302 (623)
++++.+|+ ...+..|. .-+....+||+|..||-.+||.. .++| ++=+. +.++... ... .
T Consensus 462 vWS~qTGq---llDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT------VRiW--~if~s~~~vEtl~--i~s------d 522 (893)
T KOG0291|consen 462 VWSVQTGQ---LLDILSGHEGPVSGLSFSPDGSLLASGSWDKT------VRIW--DIFSSSGTVETLE--IRS------D 522 (893)
T ss_pred EEEeecCe---eeehhcCCCCcceeeEEccccCeEEeccccce------EEEE--EeeccCceeeeEe--ecc------c
Confidence 99999998 44444444 44666789999999998888863 3444 43322 2212211 111 2
Q ss_pred CcCceeCCCCc-EEEEEeC
Q 006979 303 PTEPKWSSKGE-LFFVTDR 320 (623)
Q Consensus 303 ~~~~~ws~DG~-l~~~~~~ 320 (623)
+..+.+.|||+ +...+-.
T Consensus 523 vl~vsfrPdG~elaVaTld 541 (893)
T KOG0291|consen 523 VLAVSFRPDGKELAVATLD 541 (893)
T ss_pred eeEEEEcCCCCeEEEEEec
Confidence 35788999999 6655543
No 183
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.98 E-value=0.0035 Score=62.25 Aligned_cols=215 Identities=15% Similarity=0.111 Sum_probs=117.2
Q ss_pred eeecceeeCCCCCE-EEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc--cCCCcccceeeCCCCCEEEEEEecCCC
Q 006979 191 VSYADGIFDPRFNR-YVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV--SGSDFYAFPRMDPRGERMAWIEWHHPN 267 (623)
Q Consensus 191 ~~~~d~~~sPdG~~-l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~--~~~~~~~~p~wSPDG~~la~~~~~~~~ 267 (623)
.|--++..+|+... ++|.+... ..++++|..+++. ...+. .+..||..-.|||||++|+-.+.+...
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG--------~~~~v~D~~~g~~--~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~ 74 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPG--------TFALVFDCRTGQL--LQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYET 74 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCC--------cEEEEEEcCCCce--eeEEcCCCCCEEecCEEEcCCCCEEEEeccccCC
Confidence 34456788994444 44444422 6799999999873 23343 344688889999999999877755432
Q ss_pred CCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeC------CCCe---------eeEEEEec
Q 006979 268 MPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR------KNGF---------WNLHKWIE 332 (623)
Q Consensus 268 ~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~------~~g~---------~~L~~~d~ 332 (623)
....|-++|...+- ...--+.... ..+.+..|.|||+.+++++- +.|. -.|..+|.
T Consensus 75 ---g~G~IgVyd~~~~~--~ri~E~~s~G----IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~ 145 (305)
T PF07433_consen 75 ---GRGVIGVYDAARGY--RRIGEFPSHG----IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDA 145 (305)
T ss_pred ---CcEEEEEEECcCCc--EEEeEecCCC----cChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEec
Confidence 46779999988431 1111122222 55678999999984445542 1222 24556766
Q ss_pred CCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECC-----eEEEEEEeCCCCceeecccCCc------
Q 006979 333 SNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG-----RSYLGILDDFGHSLSLLDIPFT------ 401 (623)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g-----~~~L~~~d~~~~~~~~lt~~~~------ 401 (623)
.+|++..-.....+.. ..+.+.+.+- .++.+++.....| ..-|.+++.. +..+.+..+..
T Consensus 146 ~sG~ll~q~~Lp~~~~----~lSiRHLa~~----~~G~V~~a~Q~qg~~~~~~PLva~~~~g-~~~~~~~~p~~~~~~l~ 216 (305)
T PF07433_consen 146 RSGALLEQVELPPDLH----QLSIRHLAVD----GDGTVAFAMQYQGDPGDAPPLVALHRRG-GALRLLPAPEEQWRRLN 216 (305)
T ss_pred CCCceeeeeecCcccc----ccceeeEEec----CCCcEEEEEecCCCCCccCCeEEEEcCC-CcceeccCChHHHHhhC
Confidence 6776332111000000 1223344443 3344444443333 3345555543 33555544321
Q ss_pred -ceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979 402 -DIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (623)
Q Consensus 402 -~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~ 436 (623)
.+.++ +.+++.+++++ .....+.+.|.++++.
T Consensus 217 ~Y~gSIa~~~~g~~ia~ts---PrGg~~~~~d~~tg~~ 251 (305)
T PF07433_consen 217 GYIGSIAADRDGRLIAVTS---PRGGRVAVWDAATGRL 251 (305)
T ss_pred CceEEEEEeCCCCEEEEEC---CCCCEEEEEECCCCCE
Confidence 24455 44555555432 3334566778888874
No 184
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.97 E-value=0.0039 Score=62.69 Aligned_cols=246 Identities=14% Similarity=0.083 Sum_probs=122.2
Q ss_pred CcEEEEeCCCCCCCce-ecCCCCCCCCeeecceeeCCCCCEEEEEEecc-CCCCCCceeEEEEEEcCCCCcccceecccC
Q 006979 165 QRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDR-RQDALNSTTEIVAIALNGQNIQEPKVLVSG 242 (623)
Q Consensus 165 ~~l~~~d~~~g~~~~~-~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~-~~~~~~~~~~L~~idl~~g~~~~~~~l~~~ 242 (623)
+++|++|.+++ +.. ++. ......+..||||+.++...--. +..-.+....|-++|..+-.......|...
T Consensus 17 ~rv~viD~d~~--k~lGmi~------~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k 88 (342)
T PF06433_consen 17 SRVYVIDADSG--KLLGMID------TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPK 88 (342)
T ss_dssp EEEEEEETTTT--EEEEEEE------EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS
T ss_pred ceEEEEECCCC--cEEEEee------cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCc
Confidence 57999998765 221 222 23455678999999887543211 111011334566778877432112334433
Q ss_pred CC-----cccceeeCCCCCEEEEEEecCCCCCCCceEEEEEE--------------------------------------
Q 006979 243 SD-----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGY-------------------------------------- 279 (623)
Q Consensus 243 ~~-----~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d-------------------------------------- 279 (623)
.. .......|.|||++++.... | ...+-++|
T Consensus 89 ~R~~~~~~~~~~~ls~dgk~~~V~N~T-P-----a~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v 162 (342)
T PF06433_consen 89 PRAQVVPYKNMFALSADGKFLYVQNFT-P-----ATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTV 162 (342)
T ss_dssp -B--BS--GGGEEE-TTSSEEEEEEES-S-----SEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEE
T ss_pred chheecccccceEEccCCcEEEEEccC-C-----CCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEE
Confidence 12 22345699999999876532 2 22233333
Q ss_pred -ecCCCceeeeE-EEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeeccc---cccccccc
Q 006979 280 -ISENGDVYKRV-CVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA---EFSRPLWV 353 (623)
Q Consensus 280 -~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~---~~~~~~w~ 353 (623)
++..|....+. .+...+.+ .-...+.++.++. ++|++-. | ++|.+|..+.+.+...+-.. .-....|.
T Consensus 163 ~Ld~~Gk~~~~~t~~F~~~~d--p~f~~~~~~~~~~~~~F~Sy~--G--~v~~~dlsg~~~~~~~~~~~~t~~e~~~~Wr 236 (342)
T PF06433_consen 163 TLDADGKEAQKSTKVFDPDDD--PLFEHPAYSRDGGRLYFVSYE--G--NVYSADLSGDSAKFGKPWSLLTDAEKADGWR 236 (342)
T ss_dssp EETSTSSEEEEEEEESSTTTS---B-S--EEETTTTEEEEEBTT--S--EEEEEEETTSSEEEEEEEESS-HHHHHTTEE
T ss_pred EECCCCCEeEeeccccCCCCc--ccccccceECCCCeEEEEecC--C--EEEEEeccCCcccccCcccccCccccccCcC
Confidence 33222211100 01111101 2234556655443 7776654 3 68888887766544432111 11235788
Q ss_pred ccCcc-eeEEeecCCCCEEEEEEEE-------CCeEEEEEEeCCCCce-eecccCCcceEe--eeecCCEEEEEEecCCC
Q 006979 354 FGINS-YEIIQSHGEKNLIACSYRQ-------NGRSYLGILDDFGHSL-SLLDIPFTDIDN--ITLGNDCLFVEGASGVE 422 (623)
Q Consensus 354 ~~~~~-~~~l~~s~~~~~l~~~~~~-------~g~~~L~~~d~~~~~~-~~lt~~~~~v~~--~~~~~~~~~~~~~s~~~ 422 (623)
+|.-. +.+. +..++||+.-.. ++...||.+|+.+++. .++..+.. +.+ ++.+++-++|..+. .
T Consensus 237 PGG~Q~~A~~---~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~-~~Si~Vsqd~~P~L~~~~~--~ 310 (342)
T PF06433_consen 237 PGGWQLIAYH---AASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP-IDSIAVSQDDKPLLYALSA--G 310 (342)
T ss_dssp E-SSS-EEEE---TTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE-ESEEEEESSSS-EEEEEET--T
T ss_pred Ccceeeeeec---cccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc-cceEEEccCCCcEEEEEcC--C
Confidence 76543 3443 256677765543 3467899999998764 45654322 323 35566655554432 2
Q ss_pred CCeEEEEEcCCCcc
Q 006979 423 PSSVAKVTLDDHKL 436 (623)
Q Consensus 423 ~~~ly~~~l~~~~~ 436 (623)
...|+.+|..+|++
T Consensus 311 ~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 311 DGTLDVYDAATGKL 324 (342)
T ss_dssp TTEEEEEETTT--E
T ss_pred CCeEEEEeCcCCcE
Confidence 35799999998874
No 185
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.97 E-value=0.00069 Score=70.80 Aligned_cols=186 Identities=11% Similarity=0.062 Sum_probs=95.8
Q ss_pred eEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCcc
Q 006979 221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 300 (623)
Q Consensus 221 ~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~ 300 (623)
+.+.++|.++.+. +..+..+........+|||||+++... . ...|.++|+.+... ..++-.+.
T Consensus 16 ~~v~viD~~t~~~--~~~i~~~~~~h~~~~~s~Dgr~~yv~~-r-------dg~vsviD~~~~~~--v~~i~~G~----- 78 (369)
T PF02239_consen 16 GSVAVIDGATNKV--VARIPTGGAPHAGLKFSPDGRYLYVAN-R-------DGTVSVIDLATGKV--VATIKVGG----- 78 (369)
T ss_dssp TEEEEEETTT-SE--EEEEE-STTEEEEEE-TT-SSEEEEEE-T-------TSEEEEEETTSSSE--EEEEE-SS-----
T ss_pred CEEEEEECCCCeE--EEEEcCCCCceeEEEecCCCCEEEEEc-C-------CCeEEEEECCcccE--EEEEecCC-----
Confidence 6799999988763 345554444455577999999987664 2 13599999988743 23333333
Q ss_pred ccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEE-EeecccccccccccccCcceeEEeecCCCCEEEEEEEECC
Q 006979 301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG 379 (623)
Q Consensus 301 ~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~-l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g 379 (623)
.......|+||+++++++. ....+..+|..+.+... +......... ...+-..+. .++....+++...+.+
T Consensus 79 -~~~~i~~s~DG~~~~v~n~--~~~~v~v~D~~tle~v~~I~~~~~~~~~----~~~Rv~aIv-~s~~~~~fVv~lkd~~ 150 (369)
T PF02239_consen 79 -NPRGIAVSPDGKYVYVANY--EPGTVSVIDAETLEPVKTIPTGGMPVDG----PESRVAAIV-ASPGRPEFVVNLKDTG 150 (369)
T ss_dssp -EEEEEEE--TTTEEEEEEE--ETTEEEEEETTT--EEEEEE--EE-TTT----S---EEEEE-E-SSSSEEEEEETTTT
T ss_pred -CcceEEEcCCCCEEEEEec--CCCceeEeccccccceeecccccccccc----cCCCceeEE-ecCCCCEEEEEEccCC
Confidence 3457899999997777765 23367778987766443 3322111100 001111111 1225555555554433
Q ss_pred eEEEEEEeCCCCce---eecccCCcceEee-eecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979 380 RSYLGILDDFGHSL---SLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (623)
Q Consensus 380 ~~~L~~~d~~~~~~---~~lt~~~~~v~~~-~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~ 436 (623)
+++.+|...... +.+..+....+.. ++++.+++..... ...+-.+|+++++.
T Consensus 151 --~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~---sn~i~viD~~~~k~ 206 (369)
T PF02239_consen 151 --EIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANG---SNKIAVIDTKTGKL 206 (369)
T ss_dssp --EEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGG---GTEEEEEETTTTEE
T ss_pred --eEEEEEeccccccceeeecccccccccccCcccceeeecccc---cceeEEEeeccceE
Confidence 678888665422 2333332223333 6666666554332 23788888877654
No 186
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.97 E-value=0.00091 Score=62.49 Aligned_cols=133 Identities=14% Similarity=0.085 Sum_probs=79.2
Q ss_pred CeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCC
Q 006979 190 LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP 269 (623)
Q Consensus 190 ~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p 269 (623)
..|.+|...+|+|++....+.+.+..-......||+.-+ +++ +..+...-+..++..|+-|-|+++|+...
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~-~h~---v~~i~~~v~IsNgl~Wd~d~K~fY~iDsl----- 178 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA-GHQ---VELIWNCVGISNGLAWDSDAKKFYYIDSL----- 178 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEecc-CCC---ceeeehhccCCccccccccCcEEEEEccC-----
Confidence 578999999999999888887654321223456776544 455 66666666677788999999999999532
Q ss_pred CCceEE--EEEEecCCCceeeeEEEcCCCC---CccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeE
Q 006979 270 WDKAEL--WVGYISENGDVYKRVCVAGFDP---TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEV 337 (623)
Q Consensus 270 ~~~~~L--~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~ 337 (623)
..++ |-+|..++.. .+++.+-.... .-...+....-..+|.|| ++-. ....++++|+.+|+.
T Consensus 179 --n~~V~a~dyd~~tG~~-snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~-Va~~--ng~~V~~~dp~tGK~ 245 (310)
T KOG4499|consen 179 --NYEVDAYDYDCPTGDL-SNRKVIFDLRKSQPFESLEPDGMTIDTEGNLY-VATF--NGGTVQKVDPTTGKI 245 (310)
T ss_pred --ceEEeeeecCCCcccc-cCcceeEEeccCCCcCCCCCCcceEccCCcEE-EEEe--cCcEEEEECCCCCcE
Confidence 2345 5555665532 23333221110 000122333444445444 4444 234688999999974
No 187
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=97.96 E-value=0.00011 Score=71.00 Aligned_cols=53 Identities=23% Similarity=0.251 Sum_probs=43.5
Q ss_pred HHHHHHHH-HHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979 556 NDCCSCAT-FLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608 (623)
Q Consensus 556 ~D~~~~~~-~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~ 608 (623)
+.+..-+. |+.++..+|.+|.+|+|||+||.+++.++ ++|+.|.+.++.+|-.
T Consensus 118 ~fL~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSl 172 (264)
T COG2819 118 EFLTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSL 172 (264)
T ss_pred HHHHHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchh
Confidence 34444455 44555679999999999999999999999 9999999999999854
No 188
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=97.96 E-value=9.4e-06 Score=64.31 Aligned_cols=58 Identities=21% Similarity=0.323 Sum_probs=47.7
Q ss_pred CeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979 472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (623)
Q Consensus 472 g~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g 539 (623)
|.+|+...+.|++ . +..+|+++||- ......|...++.|+++||.|+.+|+||.|.+.
T Consensus 1 G~~L~~~~w~p~~-------~-~k~~v~i~HG~--~eh~~ry~~~a~~L~~~G~~V~~~D~rGhG~S~ 58 (79)
T PF12146_consen 1 GTKLFYRRWKPEN-------P-PKAVVVIVHGF--GEHSGRYAHLAEFLAEQGYAVFAYDHRGHGRSE 58 (79)
T ss_pred CcEEEEEEecCCC-------C-CCEEEEEeCCc--HHHHHHHHHHHHHHHhCCCEEEEECCCcCCCCC
Confidence 5678888898976 3 56899999998 444457788999999999999999999977654
No 189
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=97.95 E-value=4.9e-05 Score=75.23 Aligned_cols=112 Identities=20% Similarity=0.240 Sum_probs=70.1
Q ss_pred CCCEEEEecCCCCCcccC-cCCHHhHHHHcCceEEEEECCCCC-CCCchhHHHhhccCCccchHHHHHHHHHHHHhC--C
Q 006979 494 KPPLLVKSHGGPTSEARG-ILNLSIQYWTSRGWAFVDVNYGGS-TGYGREFRERLLGRWGIVDVNDCCSCATFLVGS--G 569 (623)
Q Consensus 494 ~~Pliv~~hGg~~~~~~~-~~~~~~~~~a~~G~~v~~~d~rGs-~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~--~ 569 (623)
++-+||++-|-..+.... .....++.+.+.||.|+.+..+.| .|+|-.-.+ .|++|+.++|+||++. |
T Consensus 32 ~~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~SL~--------~D~~eI~~~v~ylr~~~~g 103 (303)
T PF08538_consen 32 APNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTSSLD--------RDVEEIAQLVEYLRSEKGG 103 (303)
T ss_dssp SSSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S--HH--------HHHHHHHHHHHHHHHHS--
T ss_pred CCcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcchhh--------hHHHHHHHHHHHHHHhhcc
Confidence 345888886654333332 334567777778999999998863 345543332 5789999999999886 2
Q ss_pred CCCCCceEEEEcChHHHHHHHHh-c-CC----CceeEEEecccCCCHHHh
Q 006979 570 KADEKRLCITGGSAGGYTTLAAL-A-FR----DTFKAGASLYGVSIPVII 613 (623)
Q Consensus 570 ~~d~~rv~i~G~S~GG~~~~~~~-~-~~----~~f~a~v~~~g~~d~~~~ 613 (623)
.-..+||+|||||-|..-++..+ . .+ ..+.++|..+||+|-+.+
T Consensus 104 ~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~ 153 (303)
T PF08538_consen 104 HFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAI 153 (303)
T ss_dssp ----S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTST
T ss_pred ccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHh
Confidence 23578999999999999999888 3 22 679999999999997654
No 190
>PTZ00420 coronin; Provisional
Probab=97.95 E-value=0.0017 Score=71.19 Aligned_cols=207 Identities=11% Similarity=0.016 Sum_probs=111.3
Q ss_pred CceEEEeC--CEEEEEeCCCCcEEEEeCCCCCCCce-------ecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCC
Q 006979 147 GGAFRIFG--DTVIFSNYKDQRLYKHSIDSKDSSPL-------PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDAL 217 (623)
Q Consensus 147 ~~~~~~s~--d~l~f~~~~~~~l~~~d~~~g~~~~~-------~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~ 217 (623)
+.+..+++ +.++++...++.|.++++.++..... .+... ........|+|++..++++....
T Consensus 77 V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH----~~~V~sVaf~P~g~~iLaSgS~D----- 147 (568)
T PTZ00420 77 ILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH----KKKISIIDWNPMNYYIMCSSGFD----- 147 (568)
T ss_pred EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC----CCcEEEEEECCCCCeEEEEEeCC-----
Confidence 44555654 35777777888899999875311111 12211 23466788999998876554322
Q ss_pred CceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCC
Q 006979 218 NSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP 297 (623)
Q Consensus 218 ~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~ 297 (623)
..|.++|+.+++. ...+. ..+.+....|+|||+.|+....+ ..|.++|+..+.. ...+.+..
T Consensus 148 ---gtIrIWDl~tg~~--~~~i~-~~~~V~SlswspdG~lLat~s~D--------~~IrIwD~Rsg~~---i~tl~gH~- 209 (568)
T PTZ00420 148 ---SFVNIWDIENEKR--AFQIN-MPKKLSSLKWNIKGNLLSGTCVG--------KHMHIIDPRKQEI---ASSFHIHD- 209 (568)
T ss_pred ---CeEEEEECCCCcE--EEEEe-cCCcEEEEEECCCCCEEEEEecC--------CEEEEEECCCCcE---EEEEeccc-
Confidence 5688889988752 22332 23345567899999988755422 2488889887632 22233332
Q ss_pred CccccC-cCce----eCCCCcEEEEEe-CCCCeeeEEEEecCC-CeEEEEeeccccccc--ccccccCcceeEEeecCCC
Q 006979 298 TIVESP-TEPK----WSSKGELFFVTD-RKNGFWNLHKWIESN-NEVLAIYSLDAEFSR--PLWVFGINSYEIIQSHGEK 368 (623)
Q Consensus 298 ~~~~~~-~~~~----ws~DG~l~~~~~-~~~g~~~L~~~d~~~-~~~~~l~~~~~~~~~--~~w~~~~~~~~~l~~s~~~ 368 (623)
... .... |++|++.++... .+.....|..+|+.. ++.......+...+. |.|. ++.
T Consensus 210 ---g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D------------~~t 274 (568)
T PTZ00420 210 ---GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYD------------EST 274 (568)
T ss_pred ---CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeee------------CCC
Confidence 111 1222 458877444433 312234677778764 332222111111111 1221 145
Q ss_pred CEEEEEEEECCeEEEEEEeCCCCceeecc
Q 006979 369 NLIACSYRQNGRSYLGILDDFGHSLSLLD 397 (623)
Q Consensus 369 ~~l~~~~~~~g~~~L~~~d~~~~~~~~lt 397 (623)
+.+|++...++.-++|-+ ..+....|.
T Consensus 275 g~l~lsGkGD~tIr~~e~--~~~~~~~l~ 301 (568)
T PTZ00420 275 GLIYLIGKGDGNCRYYQH--SLGSIRKVN 301 (568)
T ss_pred CCEEEEEECCCeEEEEEc--cCCcEEeec
Confidence 566666655666555544 445555554
No 191
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=97.94 E-value=2e-05 Score=76.41 Aligned_cols=77 Identities=13% Similarity=0.076 Sum_probs=60.6
Q ss_pred eEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEe
Q 006979 525 WAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGAS 603 (623)
Q Consensus 525 ~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~ 603 (623)
|.|+++|.||.|..... ....+.....+|+.+.++++++.-.+ +++.++||||||.+++.++ .+|++++++|+
T Consensus 1 f~vi~~d~rG~g~S~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl 74 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPH----WDPDFPDYTTDDLAADLEALREALGI--KKINLVGHSMGGMLALEYAAQYPERVKKLVL 74 (230)
T ss_dssp EEEEEEECTTSTTSSSC----CGSGSCTHCHHHHHHHHHHHHHHHTT--SSEEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred CEEEEEeCCCCCCCCCC----ccCCcccccHHHHHHHHHHHHHHhCC--CCeEEEEECCChHHHHHHHHHCchhhcCcEE
Confidence 68999999997654421 11223345578999999998886333 4599999999999999998 89999999999
Q ss_pred cccC
Q 006979 604 LYGV 607 (623)
Q Consensus 604 ~~g~ 607 (623)
..++
T Consensus 75 ~~~~ 78 (230)
T PF00561_consen 75 ISPP 78 (230)
T ss_dssp ESES
T ss_pred Eeee
Confidence 9986
No 192
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.93 E-value=0.001 Score=71.96 Aligned_cols=158 Identities=13% Similarity=0.135 Sum_probs=100.7
Q ss_pred ecCCceEEEeCC-EEEEEeCCCCcEEEEeCC-CCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCcee
Q 006979 144 EYGGGAFRIFGD-TVIFSNYKDQRLYKHSID-SKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTT 221 (623)
Q Consensus 144 ~~g~~~~~~s~d-~l~f~~~~~~~l~~~d~~-~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~ 221 (623)
..++....+++| ..+.....|.+|.++|+. .+ ...+.+... ........|+|+|+.++..+.| .
T Consensus 203 ~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~-~~~~~l~gH----~~~v~~~~f~p~g~~i~Sgs~D---------~ 268 (456)
T KOG0266|consen 203 TRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG-RNLKTLKGH----STYVTSVAFSPDGNLLVSGSDD---------G 268 (456)
T ss_pred ccceeeeEECCCCcEEEEecCCceEEEeeccCCC-eEEEEecCC----CCceEEEEecCCCCEEEEecCC---------C
Confidence 345666777766 466677778889999983 32 223444432 3455778899999766665554 4
Q ss_pred EEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccc
Q 006979 222 EIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE 301 (623)
Q Consensus 222 ~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~ 301 (623)
.+.+.|+.+++. .+.|....+.+....+++||+.|+-.+.| ..|.++|+.++... ....+.+.. . .
T Consensus 269 tvriWd~~~~~~--~~~l~~hs~~is~~~f~~d~~~l~s~s~d--------~~i~vwd~~~~~~~-~~~~~~~~~-~--~ 334 (456)
T KOG0266|consen 269 TVRIWDVRTGEC--VRKLKGHSDGISGLAFSPDGNLLVSASYD--------GTIRVWDLETGSKL-CLKLLSGAE-N--S 334 (456)
T ss_pred cEEEEeccCCeE--EEeeeccCCceEEEEECCCCCEEEEcCCC--------ccEEEEECCCCcee-eeecccCCC-C--C
Confidence 578888888762 45565556677788999999988765432 24888898877210 012333332 1 1
Q ss_pred -cCcCceeCCCCcEEEEEeCCCCeeeEEEE
Q 006979 302 -SPTEPKWSSKGELFFVTDRKNGFWNLHKW 330 (623)
Q Consensus 302 -~~~~~~ws~DG~l~~~~~~~~g~~~L~~~ 330 (623)
.+....|+|+|+.+++... ++...+|.+
T Consensus 335 ~~~~~~~fsp~~~~ll~~~~-d~~~~~w~l 363 (456)
T KOG0266|consen 335 APVTSVQFSPNGKYLLSASL-DRTLKLWDL 363 (456)
T ss_pred CceeEEEECCCCcEEEEecC-CCeEEEEEc
Confidence 3577899999985555544 455566544
No 193
>PTZ00421 coronin; Provisional
Probab=97.92 E-value=0.0017 Score=70.55 Aligned_cols=161 Identities=9% Similarity=0.042 Sum_probs=92.3
Q ss_pred CceEEEeC--CEEEEEeCCCCcEEEEeCCCCCC------CceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCC
Q 006979 147 GGAFRIFG--DTVIFSNYKDQRLYKHSIDSKDS------SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALN 218 (623)
Q Consensus 147 ~~~~~~s~--d~l~f~~~~~~~l~~~d~~~g~~------~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~ 218 (623)
+.++.+++ +.++++...|+.|.++|+.++.. ....|... ...+....|+|++..++++....
T Consensus 78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH----~~~V~~l~f~P~~~~iLaSgs~D------ 147 (493)
T PTZ00421 78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGH----TKKVGIVSFHPSAMNVLASAGAD------ 147 (493)
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCC----CCcEEEEEeCcCCCCEEEEEeCC------
Confidence 34555554 35667777788899999865310 01122221 23466788999875444433321
Q ss_pred ceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCC
Q 006979 219 STTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT 298 (623)
Q Consensus 219 ~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~ 298 (623)
..|.++|+.+++. ...+....+.+....|+|||+.|+....| ..|.++|+..+.. ...+.+.. .
T Consensus 148 --gtVrIWDl~tg~~--~~~l~~h~~~V~sla~spdG~lLatgs~D--------g~IrIwD~rsg~~---v~tl~~H~-~ 211 (493)
T PTZ00421 148 --MVVNVWDVERGKA--VEVIKCHSDQITSLEWNLDGSLLCTTSKD--------KKLNIIDPRDGTI---VSSVEAHA-S 211 (493)
T ss_pred --CEEEEEECCCCeE--EEEEcCCCCceEEEEEECCCCEEEEecCC--------CEEEEEECCCCcE---EEEEecCC-C
Confidence 5688889988752 33344344556678899999988766533 2488889876632 22233322 1
Q ss_pred ccccCcCceeCCCCcEEEEEe-CCCCeeeEEEEecCCC
Q 006979 299 IVESPTEPKWSSKGELFFVTD-RKNGFWNLHKWIESNN 335 (623)
Q Consensus 299 ~~~~~~~~~ws~DG~l~~~~~-~~~g~~~L~~~d~~~~ 335 (623)
.......|.+++..++... .......|..+|+...
T Consensus 212 --~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 212 --AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred --CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence 1234678999877444332 2122345666776543
No 194
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=97.91 E-value=1.4e-05 Score=74.26 Aligned_cols=97 Identities=16% Similarity=0.119 Sum_probs=70.6
Q ss_pred CHHhHHHHcCceEEEEECCCCCC----C-CchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHH
Q 006979 514 NLSIQYWTSRGWAFVDVNYGGST----G-YGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTT 588 (623)
Q Consensus 514 ~~~~~~~a~~G~~v~~~d~rGs~----~-~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~ 588 (623)
...+..++..||.|+.||+..+. + --.++..-..+.-......|+.+.++||..+| +..+||++|+||||-.+
T Consensus 57 r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGak~v 134 (242)
T KOG3043|consen 57 REGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNHG--DSKKIGVVGFCWGAKVV 134 (242)
T ss_pred HHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHcC--CcceeeEEEEeecceEE
Confidence 45677888999999999976531 1 11122222333334455789999999999775 46899999999999988
Q ss_pred HHHh-cCCCceeEEEecccC-CCHHHh
Q 006979 589 LAAL-AFRDTFKAGASLYGV-SIPVII 613 (623)
Q Consensus 589 ~~~~-~~~~~f~a~v~~~g~-~d~~~~ 613 (623)
..+. ..+ .|.|+|+.+|. .|..+.
T Consensus 135 v~~~~~~~-~f~a~v~~hps~~d~~D~ 160 (242)
T KOG3043|consen 135 VTLSAKDP-EFDAGVSFHPSFVDSADI 160 (242)
T ss_pred EEeeccch-hheeeeEecCCcCChhHH
Confidence 8777 555 89999999995 565443
No 195
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.0019 Score=62.91 Aligned_cols=156 Identities=10% Similarity=0.129 Sum_probs=84.7
Q ss_pred EEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 006979 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP 236 (623)
Q Consensus 157 l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~ 236 (623)
.+.+...|..|.+||+... .-+-+... .. -.-.+++|.| |+|+...+. ..|-++|+..=...+-
T Consensus 114 ~FlS~S~D~tvrLWDlR~~--~cqg~l~~----~~-~pi~AfDp~G--LifA~~~~~-------~~IkLyD~Rs~dkgPF 177 (311)
T KOG1446|consen 114 TFLSSSLDKTVRLWDLRVK--KCQGLLNL----SG-RPIAAFDPEG--LIFALANGS-------ELIKLYDLRSFDKGPF 177 (311)
T ss_pred eEEecccCCeEEeeEecCC--CCceEEec----CC-CcceeECCCC--cEEEEecCC-------CeEEEEEecccCCCCc
Confidence 4455556777999998854 22222221 00 1125699999 444443322 2577778754110001
Q ss_pred ee--cc-cCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc
Q 006979 237 KV--LV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 313 (623)
Q Consensus 237 ~~--l~-~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~ 313 (623)
+. +. ....-....+||||||.|.... + .+.++++|.=.|. ....+.+.... ........++|||+
T Consensus 178 ~tf~i~~~~~~ew~~l~FS~dGK~iLlsT-~-------~s~~~~lDAf~G~---~~~tfs~~~~~-~~~~~~a~ftPds~ 245 (311)
T KOG1446|consen 178 TTFSITDNDEAEWTDLEFSPDGKSILLST-N-------ASFIYLLDAFDGT---VKSTFSGYPNA-GNLPLSATFTPDSK 245 (311)
T ss_pred eeEccCCCCccceeeeEEcCCCCEEEEEe-C-------CCcEEEEEccCCc---EeeeEeeccCC-CCcceeEEECCCCc
Confidence 22 22 1122356788999999998654 3 3458999876663 22222222201 02335788999999
Q ss_pred EEEEEeCCCCeeeEEEEecCCCeEEEEeec
Q 006979 314 LFFVTDRKNGFWNLHKWIESNNEVLAIYSL 343 (623)
Q Consensus 314 l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~ 343 (623)
+++.... +|. |+.++.+++.....+.+
T Consensus 246 Fvl~gs~-dg~--i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 246 FVLSGSD-DGT--IHVWNLETGKKVAVLRG 272 (311)
T ss_pred EEEEecC-CCc--EEEEEcCCCcEeeEecC
Confidence 6655544 454 45555677765554433
No 196
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=97.89 E-value=0.00063 Score=75.98 Aligned_cols=98 Identities=11% Similarity=0.205 Sum_probs=66.0
Q ss_pred CEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceec-ccCCCcccceeeCCCCCEEEE-EEecCCCCCCCceEEEEEEe
Q 006979 203 NRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL-VSGSDFYAFPRMDPRGERMAW-IEWHHPNMPWDKAELWVGYI 280 (623)
Q Consensus 203 ~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l-~~~~~~~~~p~wSPDG~~la~-~~~~~~~~p~~~~~L~v~d~ 280 (623)
.+|+|+.... .+|.++|.++.. ++.+ .........|+|||||++|+| ++...-. ....||+.++
T Consensus 319 tkiAfv~~~~--------~~L~~~D~dG~n---~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~---g~s~vYv~~L 384 (912)
T TIGR02171 319 AKLAFRNDVT--------GNLAYIDYTKGA---SRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLP---GKSSVYVRNL 384 (912)
T ss_pred eeEEEEEcCC--------CeEEEEecCCCC---ceEEEecCCCceecCcCCCCCCEEEEEEeecCCC---CCceEEEEeh
Confidence 3688876522 379999999987 7777 666666778999999999999 6544310 1566999999
Q ss_pred cCCCceeeeEEEcCCCCCccccCcCceeCCCCc--EEEEEeC
Q 006979 281 SENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE--LFFVTDR 320 (623)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~--l~~~~~~ 320 (623)
.+.+. ...++..+ . ..+.+.+-..+|. |+|+++.
T Consensus 385 ~t~~~-~~vkl~ve-~----aaiprwrv~e~gdt~ivyv~~a 420 (912)
T TIGR02171 385 NASGS-GLVKLPVE-N----AAIPRWRVLENGDTVIVYVSDA 420 (912)
T ss_pred hccCC-CceEeecc-c----ccccceEecCCCCeEEEEEcCC
Confidence 98754 12222222 2 3444555567776 7888775
No 197
>PTZ00421 coronin; Provisional
Probab=97.89 E-value=0.013 Score=63.69 Aligned_cols=120 Identities=14% Similarity=0.151 Sum_probs=73.1
Q ss_pred eeecceeeCC-CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc-----ccceecccCCCcccceeeCCCCC-EEEEEEe
Q 006979 191 VSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-----QEPKVLVSGSDFYAFPRMDPRGE-RMAWIEW 263 (623)
Q Consensus 191 ~~~~d~~~sP-dG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~-----~~~~~l~~~~~~~~~p~wSPDG~-~la~~~~ 263 (623)
..+.+..|+| +++.|+...+| ..|.++|+.++.. ..+..+......+....|+|++. .|+-...
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~D---------gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~ 146 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASED---------GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA 146 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCC---------CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC
Confidence 4567889999 88877665554 4567777755321 01223333334456678999975 4544443
Q ss_pred cCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeE
Q 006979 264 HHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEV 337 (623)
Q Consensus 264 ~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~ 337 (623)
| ..|.++|+..+. ....+.+.. ..+....|+|||++++.... ++. |..+|+.+++.
T Consensus 147 D--------gtVrIWDl~tg~---~~~~l~~h~----~~V~sla~spdG~lLatgs~-Dg~--IrIwD~rsg~~ 202 (493)
T PTZ00421 147 D--------MVVNVWDVERGK---AVEVIKCHS----DQITSLEWNLDGSLLCTTSK-DKK--LNIIDPRDGTI 202 (493)
T ss_pred C--------CEEEEEECCCCe---EEEEEcCCC----CceEEEEEECCCCEEEEecC-CCE--EEEEECCCCcE
Confidence 3 237888988762 333444443 45778999999986655544 344 55667777653
No 198
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.88 E-value=0.004 Score=67.38 Aligned_cols=157 Identities=11% Similarity=0.103 Sum_probs=96.5
Q ss_pred CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCC--CceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 006979 147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDS--SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (623)
Q Consensus 147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~--~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L 223 (623)
+.+..++++ ..+.....++.+..+++.+. . ..+.+.. ......+..|+|||++++-...| ..|
T Consensus 162 v~~~~fs~~g~~l~~~~~~~~i~~~~~~~~-~~~~~~~l~~----h~~~v~~~~fs~d~~~l~s~s~D---------~ti 227 (456)
T KOG0266|consen 162 VTCVDFSPDGRALAAASSDGLIRIWKLEGI-KSNLLRELSG----HTRGVSDVAFSPDGSYLLSGSDD---------KTL 227 (456)
T ss_pred eEEEEEcCCCCeEEEccCCCcEEEeecccc-cchhhccccc----cccceeeeEECCCCcEEEEecCC---------ceE
Confidence 334444544 22333334455666666443 1 1222211 13456789999999977765554 567
Q ss_pred EEEEc-CCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCcccc
Q 006979 224 VAIAL-NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 302 (623)
Q Consensus 224 ~~idl-~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~ 302 (623)
.+.|+ +.+.. ++.+.....++....|+|+|+.|+-.+.|+ .+.+.|+.++ ...+.+.+.. ..
T Consensus 228 riwd~~~~~~~--~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~--------tvriWd~~~~---~~~~~l~~hs----~~ 290 (456)
T KOG0266|consen 228 RIWDLKDDGRN--LKTLKGHSTYVTSVAFSPDGNLLVSGSDDG--------TVRIWDVRTG---ECVRKLKGHS----DG 290 (456)
T ss_pred EEeeccCCCeE--EEEecCCCCceEEEEecCCCCEEEEecCCC--------cEEEEeccCC---eEEEeeeccC----Cc
Confidence 88888 44331 455655556677789999997776665443 2777788775 2456666665 56
Q ss_pred CcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeE
Q 006979 303 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEV 337 (623)
Q Consensus 303 ~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~ 337 (623)
+....+++||.++..+.. ++ .|..+|..++..
T Consensus 291 is~~~f~~d~~~l~s~s~-d~--~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 291 ISGLAFSPDGNLLVSASY-DG--TIRVWDLETGSK 322 (456)
T ss_pred eEEEEECCCCCEEEEcCC-Cc--cEEEEECCCCce
Confidence 778899999986665543 34 456678777774
No 199
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.87 E-value=0.0039 Score=60.13 Aligned_cols=151 Identities=13% Similarity=0.078 Sum_probs=86.7
Q ss_pred EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (623)
Q Consensus 156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~ 235 (623)
.++|......--+++|..+. .++..+... ....+|....|||||++|+.+..+... .+..|-++|...+
T Consensus 82 avafARrPGtf~~vfD~~~~-~~pv~~~s~--~~RHfyGHGvfs~dG~~LYATEndfd~----~rGViGvYd~r~~---- 150 (366)
T COG3490 82 AVAFARRPGTFAMVFDPNGA-QEPVTLVSQ--EGRHFYGHGVFSPDGRLLYATENDFDP----NRGVIGVYDAREG---- 150 (366)
T ss_pred eEEEEecCCceEEEECCCCC-cCcEEEecc--cCceeecccccCCCCcEEEeecCCCCC----CCceEEEEecccc----
Confidence 56776544444778888875 445555443 224678889999999877664433321 3467778887644
Q ss_pred ceecccCCCccc---ceeeCCCCCEEEEEEe---cCCCC---CC--C--ceEEEEEEecCCCceeeeEEEcCCCCCcccc
Q 006979 236 PKVLVSGSDFYA---FPRMDPRGERMAWIEW---HHPNM---PW--D--KAELWVGYISENGDVYKRVCVAGFDPTIVES 302 (623)
Q Consensus 236 ~~~l~~~~~~~~---~p~wSPDG~~la~~~~---~~~~~---p~--~--~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~ 302 (623)
...+.+-..+-. ...|.+||+.|+...- .+|.. +- + ...|.++|..++..++ +..++... ...+
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~lie-kh~Lp~~l--~~lS 227 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE-KHTLPASL--RQLS 227 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhh-hccCchhh--hhcc
Confidence 223322222222 2469999999987653 23221 00 0 2346677755554333 33333222 1156
Q ss_pred CcCceeCCCCcEEEEEeC
Q 006979 303 PTEPKWSSKGELFFVTDR 320 (623)
Q Consensus 303 ~~~~~ws~DG~l~~~~~~ 320 (623)
+....-.+||+++|-.+.
T Consensus 228 iRHld~g~dgtvwfgcQy 245 (366)
T COG3490 228 IRHLDIGRDGTVWFGCQY 245 (366)
T ss_pred eeeeeeCCCCcEEEEEEe
Confidence 677788899997777665
No 200
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.87 E-value=0.00034 Score=70.35 Aligned_cols=215 Identities=8% Similarity=0.029 Sum_probs=122.8
Q ss_pred EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCC--CCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 006979 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (623)
Q Consensus 156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPd--G~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~ 233 (623)
.++.+..-+|.+-+++.... .....+-.. ..+..+..|+|. +..++-...|.. -.|| ++++...
T Consensus 188 ~~laT~swsG~~kvW~~~~~-~~~~~l~gH----~~~v~~~~fhP~~~~~~lat~s~Dgt-------vklw--~~~~e~~ 253 (459)
T KOG0272|consen 188 KHLATGSWSGLVKVWSVPQC-NLLQTLRGH----TSRVGAAVFHPVDSDLNLATASADGT-------VKLW--KLSQETP 253 (459)
T ss_pred CeEEEeecCCceeEeecCCc-ceeEEEecc----ccceeeEEEccCCCccceeeeccCCc-------eeee--ccCCCcc
Confidence 45555556676666666554 122333322 356778889997 444444333321 3355 4444221
Q ss_pred ccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc
Q 006979 234 QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 313 (623)
Q Consensus 234 ~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~ 313 (623)
+..|.....-++..+|.|+|++|.-.+.|+. | .+.|+.++. +.....|.. ..+...+|.+||.
T Consensus 254 --l~~l~gH~~RVs~VafHPsG~~L~TasfD~t---W-----RlWD~~tk~---ElL~QEGHs----~~v~~iaf~~DGS 316 (459)
T KOG0272|consen 254 --LQDLEGHLARVSRVAFHPSGKFLGTASFDST---W-----RLWDLETKS---ELLLQEGHS----KGVFSIAFQPDGS 316 (459)
T ss_pred --hhhhhcchhhheeeeecCCCceeeecccccc---h-----hhcccccch---hhHhhcccc----cccceeEecCCCc
Confidence 4556655556777899999999988776654 2 244777662 233445555 6788999999998
Q ss_pred EEEEEeCCCCeeeEEEEecCCCeEEEEee-cccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCc
Q 006979 314 LFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 392 (623)
Q Consensus 314 l~~~~~~~~g~~~L~~~d~~~~~~~~l~~-~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~ 392 (623)
|+..... +...+|| |+.+|.-.-+.. .-.++-...|++ +++.+.+...++.-+||.+... ..
T Consensus 317 L~~tGGl-D~~~RvW--DlRtgr~im~L~gH~k~I~~V~fsP-------------NGy~lATgs~Dnt~kVWDLR~r-~~ 379 (459)
T KOG0272|consen 317 LAATGGL-DSLGRVW--DLRTGRCIMFLAGHIKEILSVAFSP-------------NGYHLATGSSDNTCKVWDLRMR-SE 379 (459)
T ss_pred eeeccCc-cchhhee--ecccCcEEEEecccccceeeEeECC-------------CceEEeecCCCCcEEEeeeccc-cc
Confidence 7765443 3445554 666665433332 222334445553 4556666666777788766432 22
Q ss_pred eeecccCCcceEee--eecCCEEEEEEe
Q 006979 393 LSLLDIPFTDIDNI--TLGNDCLFVEGA 418 (623)
Q Consensus 393 ~~~lt~~~~~v~~~--~~~~~~~~~~~~ 418 (623)
+-.+......|..+ ++..+.++++++
T Consensus 380 ly~ipAH~nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 380 LYTIPAHSNLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred ceecccccchhhheEecccCCeEEEEcc
Confidence 33343333335555 556777777664
No 201
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=97.87 E-value=0.00013 Score=76.51 Aligned_cols=206 Identities=14% Similarity=0.115 Sum_probs=118.2
Q ss_pred CccCceEEcC--CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeC--CEEEEEeCCC
Q 006979 89 KRLGGTAVDG--HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG--DTVIFSNYKD 164 (623)
Q Consensus 89 ~~~~~~~~~~--~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~--d~l~f~~~~~ 164 (623)
..+..+.|+| .+++.- ..|+|+..||+...++. ..-..+|+.. -..|.--+.++.+.+ ..++.+..-+
T Consensus 628 t~vtDl~WdPFD~~rLAV----a~ddg~i~lWr~~a~gl-~e~~~tPe~~---lt~h~eKI~slRfHPLAadvLa~asyd 699 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAV----ATDDGQINLWRLTANGL-PENEMTPEKI---LTIHGEKITSLRFHPLAADVLAVASYD 699 (1012)
T ss_pred ceeeecccCCCChHHeee----cccCceEEEEEeccCCC-CcccCCccee---eecccceEEEEEecchhhhHhhhhhcc
Confidence 4456788888 444432 33579999999976622 3333345431 001111112222211 1122333345
Q ss_pred CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCC
Q 006979 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD 244 (623)
Q Consensus 165 ~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~ 244 (623)
..|-++|+.++ ..--.|... .....+++|||||++++-|+.| ..|.++...+++ +.+.++..
T Consensus 700 ~Ti~lWDl~~~-~~~~~l~gH----tdqIf~~AWSpdGr~~AtVcKD---------g~~rVy~Prs~e----~pv~Eg~g 761 (1012)
T KOG1445|consen 700 STIELWDLANA-KLYSRLVGH----TDQIFGIAWSPDGRRIATVCKD---------GTLRVYEPRSRE----QPVYEGKG 761 (1012)
T ss_pred ceeeeeehhhh-hhhheeccC----cCceeEEEECCCCcceeeeecC---------ceEEEeCCCCCC----CccccCCC
Confidence 56888899865 222233332 3456679999999999999876 568999988774 45554433
Q ss_pred c----ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCC--ceeeeEEEcCCCCCccccCcCceeCCCCcEEEEE
Q 006979 245 F----YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENG--DVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVT 318 (623)
Q Consensus 245 ~----~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~ 318 (623)
- -+...|.=||+.|..+..+.. ...+|-+++...-. .+... .+ +.. -++--|.+.+|..++|++
T Consensus 762 pvgtRgARi~wacdgr~viv~Gfdk~----SeRQv~~Y~Aq~l~~~pl~t~-~l-Dva----ps~LvP~YD~Ds~~lflt 831 (1012)
T KOG1445|consen 762 PVGTRGARILWACDGRIVIVVGFDKS----SERQVQMYDAQTLDLRPLYTQ-VL-DVA----PSPLVPHYDYDSNVLFLT 831 (1012)
T ss_pred CccCcceeEEEEecCcEEEEeccccc----chhhhhhhhhhhccCCcceee-ee-ccc----CccccccccCCCceEEEe
Confidence 2 233459999999988877654 34556666655431 11111 11 111 244567788898888888
Q ss_pred eCCCCeeeEEEEec
Q 006979 319 DRKNGFWNLHKWIE 332 (623)
Q Consensus 319 ~~~~g~~~L~~~d~ 332 (623)
.. |...++.|..
T Consensus 832 GK--GD~~v~~yEv 843 (1012)
T KOG1445|consen 832 GK--GDRFVNMYEV 843 (1012)
T ss_pred cC--CCceEEEEEe
Confidence 76 5555665543
No 202
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.028 Score=54.92 Aligned_cols=248 Identities=12% Similarity=0.036 Sum_probs=128.0
Q ss_pred CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEE--eCCEEEEEeC-C
Q 006979 88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRI--FGDTVIFSNY-K 163 (623)
Q Consensus 88 ~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~--s~d~l~f~~~-~ 163 (623)
...+.++-+++ |..+.-. .++...+||-...+ .....++.. .||...+.. .+..++.+.. .
T Consensus 14 ~~~i~sl~fs~~G~~lits----s~dDsl~LYd~~~g---~~~~ti~sk--------kyG~~~~~Fth~~~~~i~sStk~ 78 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITS----SEDDSLRLYDSLSG---KQVKTINSK--------KYGVDLACFTHHSNTVIHSSTKE 78 (311)
T ss_pred CCceeEEEecCCCCEEEEe----cCCCeEEEEEcCCC---ceeeEeecc--------cccccEEEEecCCceEEEccCCC
Confidence 45677888886 5544431 12345556654332 444444432 456544333 3335555433 3
Q ss_pred CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCC
Q 006979 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS 243 (623)
Q Consensus 164 ~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~ 243 (623)
+..|..+++.+. .-.|..... ..++.....+|-+...+-...| ..+..+|+...+ .+-+..-.
T Consensus 79 d~tIryLsl~dN-kylRYF~GH----~~~V~sL~~sP~~d~FlS~S~D---------~tvrLWDlR~~~---cqg~l~~~ 141 (311)
T KOG1446|consen 79 DDTIRYLSLHDN-KYLRYFPGH----KKRVNSLSVSPKDDTFLSSSLD---------KTVRLWDLRVKK---CQGLLNLS 141 (311)
T ss_pred CCceEEEEeecC-ceEEEcCCC----CceEEEEEecCCCCeEEecccC---------CeEEeeEecCCC---CceEEecC
Confidence 556888888765 344544433 5678889999988655444443 357777887554 33222111
Q ss_pred CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCC--CceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCC
Q 006979 244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN--GDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK 321 (623)
Q Consensus 244 ~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~ 321 (623)
.- .-+++.|.|= +|....+. ..|.++|+..- |+.....+..+.. .......|||||+.+.++..
T Consensus 142 ~~-pi~AfDp~GL--ifA~~~~~------~~IkLyD~Rs~dkgPF~tf~i~~~~~----~ew~~l~FS~dGK~iLlsT~- 207 (311)
T KOG1446|consen 142 GR-PIAAFDPEGL--IFALANGS------ELIKLYDLRSFDKGPFTTFSITDNDE----AEWTDLEFSPDGKSILLSTN- 207 (311)
T ss_pred CC-cceeECCCCc--EEEEecCC------CeEEEEEecccCCCCceeEccCCCCc----cceeeeEEcCCCCEEEEEeC-
Confidence 11 1257999995 44443432 25777887642 3211111111112 34467899999994444543
Q ss_pred CCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCcee
Q 006979 322 NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 394 (623)
Q Consensus 322 ~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~ 394 (623)
.+ .++.+|.=+|....=..+...-... + -+-.+. ||++ +++....+|.-++|.+ +++...
T Consensus 208 ~s--~~~~lDAf~G~~~~tfs~~~~~~~~---~--~~a~ft---Pds~-Fvl~gs~dg~i~vw~~--~tg~~v 267 (311)
T KOG1446|consen 208 AS--FIYLLDAFDGTVKSTFSGYPNAGNL---P--LSATFT---PDSK-FVLSGSDDGTIHVWNL--ETGKKV 267 (311)
T ss_pred CC--cEEEEEccCCcEeeeEeeccCCCCc---c--eeEEEC---CCCc-EEEEecCCCcEEEEEc--CCCcEe
Confidence 23 4666776666533222111110100 0 012232 2654 5666667787777765 455443
No 203
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=97.80 E-value=3.4e-05 Score=74.20 Aligned_cols=53 Identities=19% Similarity=0.183 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979 555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608 (623)
Q Consensus 555 ~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~ 608 (623)
.+-+..|++||.+++.++++||+|+|.|.||.++|.++ .++ .++|+|+.+|-.
T Consensus 3 LEyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~ 56 (213)
T PF08840_consen 3 LEYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSS 56 (213)
T ss_dssp CHHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--S
T ss_pred hHHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCce
Confidence 45678999999999999999999999999999999999 666 799999998854
No 204
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=97.80 E-value=0.03 Score=60.60 Aligned_cols=221 Identities=8% Similarity=-0.014 Sum_probs=126.2
Q ss_pred eeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCC
Q 006979 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW 270 (623)
Q Consensus 191 ~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~ 270 (623)
...+.+..|||++.++++.+..+. ..-.|.+.|+.+|+... ..+. .......|.+|++.++|++.++..
T Consensus 129 ~~Lg~~~~s~D~~~la~s~D~~G~----e~y~lr~kdL~tg~~~~-d~i~---~~~~~~~Wa~d~~~lfYt~~d~~~--- 197 (682)
T COG1770 129 FSLGAASISPDHNLLAYSVDVLGD----EQYTLRFKDLATGEELP-DEIT---NTSGSFAWAADGKTLFYTRLDENH--- 197 (682)
T ss_pred eeeeeeeeCCCCceEEEEEecccc----cEEEEEEEecccccccc-hhhc---ccccceEEecCCCeEEEEEEcCCC---
Confidence 455678899999999997665433 24778899999986211 1121 123456799999999999977654
Q ss_pred CceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCC--eEEEEeecccccc
Q 006979 271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNN--EVLAIYSLDAEFS 348 (623)
Q Consensus 271 ~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~--~~~~l~~~~~~~~ 348 (623)
.-.+||.-.+.+... ..+.+....++. ..-...=+...+.+++...+....+++.++.+.. +.+.+.+....+
T Consensus 198 rp~kv~~h~~gt~~~-~d~lvyeE~d~~---f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~- 272 (682)
T COG1770 198 RPDKVWRHRLGTPGS-SDELVYEEKDDR---FFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGV- 272 (682)
T ss_pred CcceEEEEecCCCCC-cceEEEEcCCCc---EEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCc-
Confidence 245688888776321 234455544422 2222233444454444433244556666665543 455665542211
Q ss_pred cccccccCcceeEEeecCCCCEEEEEEEECC-eEEEEEEeC--CCCceeecccCCcc--eEeeeecCCEEEEEEecCCCC
Q 006979 349 RPLWVFGINSYEIIQSHGEKNLIACSYRQNG-RSYLGILDD--FGHSLSLLDIPFTD--IDNITLGNDCLFVEGASGVEP 423 (623)
Q Consensus 349 ~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g-~~~L~~~d~--~~~~~~~lt~~~~~--v~~~~~~~~~~~~~~~s~~~~ 423 (623)
.. ..- ..++.+|+.++.+| ..+|++... ....++.+...... +.+++.-.+.+++...... -
T Consensus 273 --eY-------~~e---h~~d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~g-l 339 (682)
T COG1770 273 --EY-------SVE---HGGDRFYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEG-L 339 (682)
T ss_pred --EE-------eee---ecCcEEEEEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccC-C
Confidence 11 111 14677888888777 556776655 22344443333222 4455555666666654443 4
Q ss_pred CeEEEEEcCCCcceeee
Q 006979 424 SSVAKVTLDDHKLKAVD 440 (623)
Q Consensus 424 ~~ly~~~l~~~~~~~lt 440 (623)
+.++..+..+++.+.|.
T Consensus 340 p~v~v~~~~~~~~~~i~ 356 (682)
T COG1770 340 PRVVVRDRKTGEERGIA 356 (682)
T ss_pred ceEEEEecCCCceeeEE
Confidence 57888888777655544
No 205
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.80 E-value=0.00072 Score=67.81 Aligned_cols=241 Identities=12% Similarity=0.032 Sum_probs=127.8
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCE-EEEEeCCCCcEE
Q 006979 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDT-VIFSNYKDQRLY 168 (623)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~-l~f~~~~~~~l~ 168 (623)
.+..+.|||+++.. +.-..+| .++.++..+| ..+...+.. ++....+-+|-+|. -++....+.+++
T Consensus 271 ~V~yi~wSPDdryL-laCg~~e----~~~lwDv~tg-d~~~~y~~~-------~~~S~~sc~W~pDg~~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 271 PVSYIMWSPDDRYL-LACGFDE----VLSLWDVDTG-DLRHLYPSG-------LGFSVSSCAWCPDGFRFVTGSPDRTII 337 (519)
T ss_pred ceEEEEECCCCCeE-EecCchH----heeeccCCcc-hhhhhcccC-------cCCCcceeEEccCCceeEecCCCCcEE
Confidence 34567788744322 2222322 2556666544 445555543 12234455566663 234445567799
Q ss_pred EEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccc
Q 006979 169 KHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAF 248 (623)
Q Consensus 169 ~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~ 248 (623)
.+|+++. ....-.. ....+..|.+.++||++++.+..+ ..+..++..+.. .+.+.....-...
T Consensus 338 ~wdlDgn--~~~~W~g---vr~~~v~dlait~Dgk~vl~v~~d---------~~i~l~~~e~~~---dr~lise~~~its 400 (519)
T KOG0293|consen 338 MWDLDGN--ILGNWEG---VRDPKVHDLAITYDGKYVLLVTVD---------KKIRLYNREARV---DRGLISEEQPITS 400 (519)
T ss_pred EecCCcc--hhhcccc---cccceeEEEEEcCCCcEEEEEecc---------cceeeechhhhh---hhccccccCceeE
Confidence 9999864 2111111 112347789999999999988765 346777776653 3334444444455
Q ss_pred eeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEE
Q 006979 249 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLH 328 (623)
Q Consensus 249 p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~ 328 (623)
...|-||+++...- . ..++++.|+++.. ..+...|.... .++-+-.|.--..-+..+.. ...++|
T Consensus 401 ~~iS~d~k~~LvnL-~-------~qei~LWDl~e~~---lv~kY~Ghkq~--~fiIrSCFgg~~~~fiaSGS--ED~kvy 465 (519)
T KOG0293|consen 401 FSISKDGKLALVNL-Q-------DQEIHLWDLEENK---LVRKYFGHKQG--HFIIRSCFGGGNDKFIASGS--EDSKVY 465 (519)
T ss_pred EEEcCCCcEEEEEc-c-------cCeeEEeecchhh---HHHHhhccccc--ceEEEeccCCCCcceEEecC--CCceEE
Confidence 78999999654432 1 2347888887541 11122222211 12222233221112223322 334677
Q ss_pred EEecCCCeEEEEeec-ccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEe
Q 006979 329 KWIESNNEVLAIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 387 (623)
Q Consensus 329 ~~d~~~~~~~~l~~~-~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d 387 (623)
.++..++++..+..+ ...+.-.+|.+ .+...+.++.++|.-+||-.+
T Consensus 466 IWhr~sgkll~~LsGHs~~vNcVswNP------------~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 466 IWHRISGKLLAVLSGHSKTVNCVSWNP------------ADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred EEEccCCceeEeecCCcceeeEEecCC------------CCHHHhhccCCCCeEEEecCC
Confidence 777777775554433 22222234543 666777777788888887554
No 206
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=97.79 E-value=0.00061 Score=67.70 Aligned_cols=115 Identities=10% Similarity=0.095 Sum_probs=68.4
Q ss_pred eEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCcc
Q 006979 221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 300 (623)
Q Consensus 221 ~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~ 300 (623)
.+|++.+..-.+ +.+.+++.....+++..|||||++||-.+.|.+ +.+.+-.++. ....+.+.-
T Consensus 346 ~tlflW~p~~~k-kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS--------VkLW~g~tGk---~lasfRGHv---- 409 (480)
T KOG0271|consen 346 FTLFLWNPFKSK-KPITRMTGHQALVNHVSFSPDGRYIASASFDKS--------VKLWDGRTGK---FLASFRGHV---- 409 (480)
T ss_pred ceEEEecccccc-cchhhhhchhhheeeEEECCCccEEEEeecccc--------eeeeeCCCcc---hhhhhhhcc----
Confidence 568888764322 113455665667888999999999998887764 4444555552 222334433
Q ss_pred ccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEee-cccccccccccc
Q 006979 301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWVF 354 (623)
Q Consensus 301 ~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~-~~~~~~~~~w~~ 354 (623)
..+.+.+|+.|.+|++.... +. .|-.++..+.++..=.+ ...++-...|++
T Consensus 410 ~~VYqvawsaDsRLlVS~Sk-Ds--TLKvw~V~tkKl~~DLpGh~DEVf~vDwsp 461 (480)
T KOG0271|consen 410 AAVYQVAWSADSRLLVSGSK-DS--TLKVWDVRTKKLKQDLPGHADEVFAVDWSP 461 (480)
T ss_pred ceeEEEEeccCccEEEEcCC-Cc--eEEEEEeeeeeecccCCCCCceEEEEEecC
Confidence 56789999999986655443 33 34445555555443223 233444455654
No 207
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.79 E-value=0.001 Score=68.67 Aligned_cols=256 Identities=12% Similarity=0.041 Sum_probs=129.4
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccC-------CCCCccceeeeecCCceEEEeCCEEEEE
Q 006979 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDIT-------PKEYAVRTTAQEYGGGAFRIFGDTVIFS 160 (623)
Q Consensus 89 ~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~-------p~~~~~r~~~~~~g~~~~~~s~d~l~f~ 160 (623)
..++.+++++ ++.+.-+....+ .-.++.+ |....-+ -+-.+-...+.+.--++|.+.....+.+
T Consensus 215 h~i~sl~ys~Tg~~iLvvsg~aq------akl~DRd--G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT 286 (641)
T KOG0772|consen 215 HQINSLQYSVTGDQILVVSGSAQ------AKLLDRD--GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLT 286 (641)
T ss_pred cccceeeecCCCCeEEEEecCcc------eeEEccC--CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEE
Confidence 3457888888 777776663322 2222222 1110001 0111223333444455666655556666
Q ss_pred eCCCCcEEEEeCCCCCCCceecCCC-CCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceec
Q 006979 161 NYKDQRLYKHSIDSKDSSPLPITPD-YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL 239 (623)
Q Consensus 161 ~~~~~~l~~~d~~~g~~~~~~Lt~~-~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l 239 (623)
...|+.|.+|++.......+.+... .+........-+|+|||++|+..+.|. .|-.++..+-.+. +.-.
T Consensus 287 ~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG---------SIQ~W~~~~~~v~-p~~~ 356 (641)
T KOG0772|consen 287 CSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG---------SIQIWDKGSRTVR-PVMK 356 (641)
T ss_pred ecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCC---------ceeeeecCCcccc-cceE
Confidence 6678878888876431222233221 111122344567999999988877653 3445554332210 1111
Q ss_pred ccC----CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEE
Q 006979 240 VSG----SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF 315 (623)
Q Consensus 240 ~~~----~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~ 315 (623)
... ..-.....||+||++|+--..|+ .|-+.|+..-.. ...+..+.... ..-.+..||||.+|+
T Consensus 357 vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~--------tLKvWDLrq~kk--pL~~~tgL~t~--~~~tdc~FSPd~kli 424 (641)
T KOG0772|consen 357 VKDAHLPGQDITSISFSYDGNYLLSRGFDD--------TLKVWDLRQFKK--PLNVRTGLPTP--FPGTDCCFSPDDKLI 424 (641)
T ss_pred eeeccCCCCceeEEEeccccchhhhccCCC--------ceeeeecccccc--chhhhcCCCcc--CCCCccccCCCceEE
Confidence 111 11245578999999987544333 377778765421 11111222211 223578999999977
Q ss_pred EEEeC---CCCeeeEEEEecCCCe-EEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeC
Q 006979 316 FVTDR---KNGFWNLHKWIESNNE-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (623)
Q Consensus 316 ~~~~~---~~g~~~L~~~d~~~~~-~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~ 388 (623)
+.... +.....|+.+|..+-+ ...|.-....+....|.+ .-+.|++.+ .+|..++| ||.
T Consensus 425 ~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whp------------kLNQi~~gs-gdG~~~vy-Ydp 487 (641)
T KOG0772|consen 425 LTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHP------------KLNQIFAGS-GDGTAHVY-YDP 487 (641)
T ss_pred EecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecc------------hhhheeeec-CCCceEEE-ECc
Confidence 65432 1223478888876533 223332334444556665 444555443 35666665 443
No 208
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=97.79 E-value=0.00026 Score=71.30 Aligned_cols=125 Identities=16% Similarity=0.016 Sum_probs=81.1
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchh--HHHhhc----
Q 006979 474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE--FRERLL---- 547 (623)
Q Consensus 474 ~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~--~~~~~~---- 547 (623)
..+..+..|+..+ ....|++|++.|.+..........++.-+.+.|++.+.+..+-.|..-.. .+..+.
T Consensus 76 ~a~~~~~~P~~~~-----~~~rp~~IhLagTGDh~f~rR~~l~a~pLl~~gi~s~~le~Pyyg~RkP~~Q~~s~l~~VsD 150 (348)
T PF09752_consen 76 TARFQLLLPKRWD-----SPYRPVCIHLAGTGDHGFWRRRRLMARPLLKEGIASLILENPYYGQRKPKDQRRSSLRNVSD 150 (348)
T ss_pred heEEEEEECCccc-----cCCCceEEEecCCCccchhhhhhhhhhHHHHcCcceEEEecccccccChhHhhcccccchhH
Confidence 3555666677521 34579999888874433333344557778888999999875532211000 000000
Q ss_pred -cCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEeccc
Q 006979 548 -GRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYG 606 (623)
Q Consensus 548 -~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g 606 (623)
-..|...+.++...++|+.++|+ .+++|.|.||||+++.+++ ..|..+.++-+.++
T Consensus 151 l~~~g~~~i~E~~~Ll~Wl~~~G~---~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~ 208 (348)
T PF09752_consen 151 LFVMGRATILESRALLHWLEREGY---GPLGLTGISMGGHMAALAASNWPRPVALVPCLSW 208 (348)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCC---CceEEEEechhHhhHHhhhhcCCCceeEEEeecc
Confidence 01344557788899999999975 5999999999999999988 67776665555544
No 209
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=97.77 E-value=0.00011 Score=71.95 Aligned_cols=136 Identities=18% Similarity=0.119 Sum_probs=82.6
Q ss_pred EEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHc----CceEEEEECCCCCCC
Q 006979 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS----RGWAFVDVNYGGSTG 537 (623)
Q Consensus 462 ~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~----~G~~v~~~d~rGs~~ 537 (623)
+.+.+.+. -..+....+|.|.+ |.+ ..++|++++.||--+.....-. .....+.. ..-+++.+|+--...
T Consensus 70 ~~~~~~~~-l~~~~~~vv~lppg--y~~--~~k~pvl~~~DG~~~~~~g~i~-~~~dsli~~g~i~pai~vgid~~d~~~ 143 (299)
T COG2382 70 EEILYSSE-LLSERRRVVYLPPG--YNP--LEKYPVLYLQDGQDWFRSGRIP-RILDSLIAAGEIPPAILVGIDYIDVKK 143 (299)
T ss_pred hhhhhhhh-hccceeEEEEeCCC--CCc--cccccEEEEeccHHHHhcCChH-HHHHHHHHcCCCCCceEEecCCCCHHH
Confidence 34444433 22345556677766 554 7899999999986333222221 12233333 356788888642111
Q ss_pred CchhHHHhhccCCccc-hH-HH-HHHHHHHHHhCCC--CCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHH
Q 006979 538 YGREFRERLLGRWGIV-DV-ND-CCSCATFLVGSGK--ADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPV 611 (623)
Q Consensus 538 ~g~~~~~~~~~~~g~~-~~-~D-~~~~~~~l~~~~~--~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~ 611 (623)
..+ .++.. +. +. ..+.+-++.+.-. -++++-+++|.|+||.++++++ .||+.|-++++++|..++.
T Consensus 144 R~~--------~~~~n~~~~~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~ 215 (299)
T COG2382 144 RRE--------ELHCNEAYWRFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWT 215 (299)
T ss_pred HHH--------HhcccHHHHHHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCccccC
Confidence 111 11111 11 11 2234445655422 4677889999999999999999 8999999999999988764
No 210
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=97.76 E-value=0.0011 Score=63.37 Aligned_cols=155 Identities=14% Similarity=0.135 Sum_probs=97.0
Q ss_pred CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979 147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (623)
Q Consensus 147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~ 225 (623)
+...+.+.| ..+++...|+.+.++|+.+| ...+++... ...+...++|||.++|+--+.| ..|-+
T Consensus 66 v~dv~~s~dg~~alS~swD~~lrlWDl~~g-~~t~~f~GH----~~dVlsva~s~dn~qivSGSrD---------kTikl 131 (315)
T KOG0279|consen 66 VSDVVLSSDGNFALSASWDGTLRLWDLATG-ESTRRFVGH----TKDVLSVAFSTDNRQIVSGSRD---------KTIKL 131 (315)
T ss_pred ecceEEccCCceEEeccccceEEEEEecCC-cEEEEEEec----CCceEEEEecCCCceeecCCCc---------ceeee
Confidence 334445545 67778778888999999987 233444332 3345678899999998765443 45677
Q ss_pred EEcCCCCcccceecccC--CCcccceeeCCCCCEEEEE--EecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccc
Q 006979 226 IALNGQNIQEPKVLVSG--SDFYAFPRMDPRGERMAWI--EWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE 301 (623)
Q Consensus 226 idl~~g~~~~~~~l~~~--~~~~~~p~wSPDG~~la~~--~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~ 301 (623)
++.-++- .-.+.++ .+.+...+|||...-...+ +||. .+-+.|+++- ..+..+.+.. .
T Consensus 132 wnt~g~c---k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dk--------tvKvWnl~~~---~l~~~~~gh~----~ 193 (315)
T KOG0279|consen 132 WNTLGVC---KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDK--------TVKVWNLRNC---QLRTTFIGHS----G 193 (315)
T ss_pred eeecccE---EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCc--------eEEEEccCCc---chhhcccccc----c
Confidence 7776654 3334433 5788889999995434444 3443 2667777654 2344455555 7
Q ss_pred cCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCe
Q 006979 302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNE 336 (623)
Q Consensus 302 ~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~ 336 (623)
++.....||||.+.. +..+.| .++.+|++.++
T Consensus 194 ~v~t~~vSpDGslca-sGgkdg--~~~LwdL~~~k 225 (315)
T KOG0279|consen 194 YVNTVTVSPDGSLCA-SGGKDG--EAMLWDLNEGK 225 (315)
T ss_pred cEEEEEECCCCCEEe-cCCCCc--eEEEEEccCCc
Confidence 888999999997443 322234 45555665554
No 211
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=97.75 E-value=0.00015 Score=74.20 Aligned_cols=116 Identities=18% Similarity=0.256 Sum_probs=76.4
Q ss_pred EEEEc-CCCCCCCCCCCCCCCEEEEecCCCCCcccCcCC-----HHhHHHHcCceEEEEECCCCCC--CCchhHHHhhcc
Q 006979 477 AYYYP-PSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-----LSIQYWTSRGWAFVDVNYGGST--GYGREFRERLLG 548 (623)
Q Consensus 477 ~~l~~-P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~-----~~~~~~a~~G~~v~~~d~rGs~--~~g~~~~~~~~~ 548 (623)
.|+.. |.. ++ .+.-|+||++|||+......... .....+ + ..++++.||.-.. ..|..|
T Consensus 108 ~Wlvk~P~~--~~---pk~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l-~-~~SILvLDYsLt~~~~~~~~y------ 174 (374)
T PF10340_consen 108 YWLVKAPNR--FK---PKSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLL-P-EVSILVLDYSLTSSDEHGHKY------ 174 (374)
T ss_pred EEEEeCCcc--cC---CCCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHc-C-CCeEEEEeccccccccCCCcC------
Confidence 47776 654 11 23349999999995332221111 122222 2 4589999987543 222222
Q ss_pred CCccchHHHHHHHHHHHH-hCCCCCCCceEEEEcChHHHHHHHHhc---CC---CceeEEEecccCCCHH
Q 006979 549 RWGIVDVNDCCSCATFLV-GSGKADEKRLCITGGSAGGYTTLAALA---FR---DTFKAGASLYGVSIPV 611 (623)
Q Consensus 549 ~~g~~~~~D~~~~~~~l~-~~~~~d~~rv~i~G~S~GG~~~~~~~~---~~---~~f~a~v~~~g~~d~~ 611 (623)
.....+++++.++|+ ++| .++|.+||-|+||.+++.++. +. ..-+.+|+++|-+++.
T Consensus 175 ---PtQL~qlv~~Y~~Lv~~~G---~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~ 238 (374)
T PF10340_consen 175 ---PTQLRQLVATYDYLVESEG---NKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLV 238 (374)
T ss_pred ---chHHHHHHHHHHHHHhccC---CCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCc
Confidence 234778999999999 555 479999999999999997773 21 2347999999998886
No 212
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=97.75 E-value=0.00011 Score=76.27 Aligned_cols=141 Identities=20% Similarity=0.226 Sum_probs=101.8
Q ss_pred CCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcC----CHHhHHHHcCceEEEEECCCC
Q 006979 459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL----NLSIQYWTSRGWAFVDVNYGG 534 (623)
Q Consensus 459 ~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~----~~~~~~~a~~G~~v~~~d~rG 534 (623)
-..|...+.+. ||..+. +--.|.. .++.|+|++.||--.+....-. ...+-.|+++||-|-.=|.||
T Consensus 46 y~~E~h~V~T~-DgYiL~-lhRIp~~-------~~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RG 116 (403)
T KOG2624|consen 46 YPVEEHEVTTE-DGYILT-LHRIPRG-------KKKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRG 116 (403)
T ss_pred CceEEEEEEcc-CCeEEE-EeeecCC-------CCCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcC
Confidence 36788888887 998444 4445654 3678999999997544433221 245667899999999999999
Q ss_pred CCCCchhHHHhhcc--------CCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCC---ceeEEE
Q 006979 535 STGYGREFRERLLG--------RWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRD---TFKAGA 602 (623)
Q Consensus 535 s~~~g~~~~~~~~~--------~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~---~f~a~v 602 (623)
..|.+........ .|-+....|+-+.++|+.+. ...+++..+|||.|+.....++ .+|+ .++..+
T Consensus 117 -n~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~--T~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~ 193 (403)
T KOG2624|consen 117 -NTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEK--TGQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFI 193 (403)
T ss_pred -cccchhhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHh--ccccceEEEEEEccchhheehhcccchhhhhhheee
Confidence 5666654332221 13344567999999999876 3468999999999999998888 5543 788999
Q ss_pred ecccCCCHH
Q 006979 603 SLYGVSIPV 611 (623)
Q Consensus 603 ~~~g~~d~~ 611 (623)
+.+|++-+.
T Consensus 194 aLAP~~~~k 202 (403)
T KOG2624|consen 194 ALAPAAFPK 202 (403)
T ss_pred eecchhhhc
Confidence 999988443
No 213
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=97.74 E-value=0.00061 Score=67.81 Aligned_cols=141 Identities=16% Similarity=0.122 Sum_probs=89.3
Q ss_pred CCCCCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCc----C-CHHhHHHHcCceEEEEE
Q 006979 456 SYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI----L-NLSIQYWTSRGWAFVDV 530 (623)
Q Consensus 456 ~~~~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~----~-~~~~~~~a~~G~~v~~~ 530 (623)
.......++.+.. |+..|..+...-.+ .++.-.||+.-|......... . .......-+.|..|+.+
T Consensus 107 ~~~~~~kRv~Iq~--D~~~IDt~~I~~~~-------a~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~f 177 (365)
T PF05677_consen 107 DEVSSVKRVPIQY--DGVKIDTMAIHQPE-------AKPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVF 177 (365)
T ss_pred ccccceeeEEEee--CCEEEEEEEeeCCC-------CCCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEE
Confidence 3345666777776 78888877664222 233457888877632222111 1 23334444579999999
Q ss_pred CCCCCCCC-chhHHHhhccCCccchHHHHHHHHHHHHhCC-CCCCCceEEEEcChHHHHHHHHhc-C----CCcee-EEE
Q 006979 531 NYGGSTGY-GREFRERLLGRWGIVDVNDCCSCATFLVGSG-KADEKRLCITGGSAGGYTTLAALA-F----RDTFK-AGA 602 (623)
Q Consensus 531 d~rGs~~~-g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~-~~d~~rv~i~G~S~GG~~~~~~~~-~----~~~f~-a~v 602 (623)
||||-|.+ |..- ...-+.|..++++||.++. -+.+++|.+.|||.||.++..++. + .|-.+ .+|
T Consensus 178 NYpGVg~S~G~~s--------~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~~~~~~dgi~~~~i 249 (365)
T PF05677_consen 178 NYPGVGSSTGPPS--------RKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKEVLKGSDGIRWFLI 249 (365)
T ss_pred CCCccccCCCCCC--------HHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhcccccCCCeeEEEE
Confidence 99995542 2111 1234789999999999754 367899999999999999888773 3 22222 345
Q ss_pred ecccCCCHHHh
Q 006979 603 SLYGVSIPVII 613 (623)
Q Consensus 603 ~~~g~~d~~~~ 613 (623)
..-+++++...
T Consensus 250 kDRsfssl~~v 260 (365)
T PF05677_consen 250 KDRSFSSLAAV 260 (365)
T ss_pred ecCCcchHHHH
Confidence 55666666543
No 214
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.73 E-value=0.0089 Score=64.67 Aligned_cols=220 Identities=12% Similarity=0.047 Sum_probs=133.0
Q ss_pred CCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 006979 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (623)
Q Consensus 154 ~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~ 233 (623)
+|.|+|-...-|+|.+++..+. .-.|... .-..+.+...+||||++|+.-.+| +.+-++|..+|-
T Consensus 319 GDWiA~g~~klgQLlVweWqsE---sYVlKQQ--gH~~~i~~l~YSpDgq~iaTG~eD---------gKVKvWn~~Sgf- 383 (893)
T KOG0291|consen 319 GDWIAFGCSKLGQLLVWEWQSE---SYVLKQQ--GHSDRITSLAYSPDGQLIATGAED---------GKVKVWNTQSGF- 383 (893)
T ss_pred CCEEEEcCCccceEEEEEeecc---ceeeecc--ccccceeeEEECCCCcEEEeccCC---------CcEEEEeccCce-
Confidence 5667776555678888877643 2223221 013456678899999988776655 456677877764
Q ss_pred ccce-ecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCC
Q 006979 234 QEPK-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 312 (623)
Q Consensus 234 ~~~~-~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG 312 (623)
.. ..++...-+....|+.+|+-|+-.+.|. .+...|+.-.. .-+.++...+ ....-.+-.|.|
T Consensus 384 --C~vTFteHts~Vt~v~f~~~g~~llssSLDG--------tVRAwDlkRYr---NfRTft~P~p---~QfscvavD~sG 447 (893)
T KOG0291|consen 384 --CFVTFTEHTSGVTAVQFTARGNVLLSSSLDG--------TVRAWDLKRYR---NFRTFTSPEP---IQFSCVAVDPSG 447 (893)
T ss_pred --EEEEeccCCCceEEEEEEecCCEEEEeecCC--------eEEeeeecccc---eeeeecCCCc---eeeeEEEEcCCC
Confidence 22 2333333456678999999776555443 25566665442 3344443331 333445556668
Q ss_pred cEEEEEeCCCCeeeEEEEecCCCeEEEEeec-ccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCC
Q 006979 313 ELFFVTDRKNGFWNLHKWIESNNEVLAIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH 391 (623)
Q Consensus 313 ~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~-~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~ 391 (623)
.+++.... +...|+.++.++|++..+..+ +..+....+.+ .+. ++++...+...++|-+=-..+
T Consensus 448 elV~AG~~--d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~------------~~~-~LaS~SWDkTVRiW~if~s~~ 512 (893)
T KOG0291|consen 448 ELVCAGAQ--DSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP------------DGS-LLASGSWDKTVRIWDIFSSSG 512 (893)
T ss_pred CEEEeecc--ceEEEEEEEeecCeeeehhcCCCCcceeeEEcc------------ccC-eEEeccccceEEEEEeeccCc
Confidence 77776654 778999999999987776643 33333322221 444 566666777778876655566
Q ss_pred ceeecccCCcceE-eeeecCCEEEEEEec
Q 006979 392 SLSLLDIPFTDID-NITLGNDCLFVEGAS 419 (623)
Q Consensus 392 ~~~~lt~~~~~v~-~~~~~~~~~~~~~~s 419 (623)
+++.|........ .+.++|+++.+...+
T Consensus 513 ~vEtl~i~sdvl~vsfrPdG~elaVaTld 541 (893)
T KOG0291|consen 513 TVETLEIRSDVLAVSFRPDGKELAVATLD 541 (893)
T ss_pred eeeeEeeccceeEEEEcCCCCeEEEEEec
Confidence 7777665432221 237888888776543
No 215
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=97.71 E-value=0.00016 Score=67.49 Aligned_cols=94 Identities=14% Similarity=0.148 Sum_probs=63.9
Q ss_pred EEEEecCCCCCcccCcCCHHhHHHHcCc--eEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCC
Q 006979 497 LLVKSHGGPTSEARGILNLSIQYWTSRG--WAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (623)
Q Consensus 497 liv~~hGg~~~~~~~~~~~~~~~~a~~G--~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~ 574 (623)
+|+++||.-.+..+.......++++++| ..+..+|++- ..++..+.++.++++. .++
T Consensus 1 ~ilYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~~-------------------~p~~a~~~l~~~i~~~--~~~ 59 (187)
T PF05728_consen 1 MILYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLPP-------------------FPEEAIAQLEQLIEEL--KPE 59 (187)
T ss_pred CeEEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCCc-------------------CHHHHHHHHHHHHHhC--CCC
Confidence 3899999854444444456677788776 4456666542 2455666666666653 234
Q ss_pred ceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHHhh
Q 006979 575 RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVIIS 614 (623)
Q Consensus 575 rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~~ 614 (623)
.+.|+|.|+|||.+.+++ .++ +++ |.+.|..+....+
T Consensus 60 ~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l 97 (187)
T PF05728_consen 60 NVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELL 97 (187)
T ss_pred CeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHH
Confidence 599999999999999998 554 445 8888887765443
No 216
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.70 E-value=0.065 Score=55.94 Aligned_cols=208 Identities=14% Similarity=0.093 Sum_probs=109.2
Q ss_pred HHHHhccCCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEE
Q 006979 81 ADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFS 160 (623)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~ 160 (623)
+..+....+.+..+.++|++...+...- +|...-| +.++| ..-.+.+.. |..-+..++.+...-+|+
T Consensus 313 ~~~i~GHnK~ITaLtv~~d~~~i~Sgsy---DG~I~~W--~~~~g-~~~~~~g~~-------h~nqI~~~~~~~~~~~~t 379 (603)
T KOG0318|consen 313 LKVISGHNKSITALTVSPDGKTIYSGSY---DGHINSW--DSGSG-TSDRLAGKG-------HTNQIKGMAASESGELFT 379 (603)
T ss_pred hheecccccceeEEEEcCCCCEEEeecc---CceEEEE--ecCCc-ccccccccc-------ccceEEEEeecCCCcEEE
Confidence 4445556778888999983333333222 3664444 44433 444454433 222244555554222334
Q ss_pred eCCCCcEEEEeCCCCCC-CceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceec
Q 006979 161 NYKDQRLYKHSIDSKDS-SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL 239 (623)
Q Consensus 161 ~~~~~~l~~~d~~~g~~-~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l 239 (623)
-.-|..|.++++..+.- ....+.-+ .+--..+.++||..++.+.. .+|.++.-.++ +..+
T Consensus 380 ~g~Dd~l~~~~~~~~~~t~~~~~~lg-----~QP~~lav~~d~~~avv~~~----------~~iv~l~~~~~----~~~~ 440 (603)
T KOG0318|consen 380 IGWDDTLRVISLKDNGYTKSEVVKLG-----SQPKGLAVLSDGGTAVVACI----------SDIVLLQDQTK----VSSI 440 (603)
T ss_pred EecCCeEEEEecccCcccccceeecC-----CCceeEEEcCCCCEEEEEec----------CcEEEEecCCc----ceee
Confidence 33455699888854310 11111111 11123556777766666665 33555542222 2222
Q ss_pred ccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEe
Q 006979 240 VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTD 319 (623)
Q Consensus 240 ~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~ 319 (623)
.-+.. ....+.+||++.++.-. . ...|+++.+.+++..++. ++.... ..+...++||||+.+...|
T Consensus 441 ~~~y~-~s~vAv~~~~~~vaVGG-~-------Dgkvhvysl~g~~l~ee~-~~~~h~----a~iT~vaySpd~~yla~~D 506 (603)
T KOG0318|consen 441 PIGYE-SSAVAVSPDGSEVAVGG-Q-------DGKVHVYSLSGDELKEEA-KLLEHR----AAITDVAYSPDGAYLAAGD 506 (603)
T ss_pred ccccc-cceEEEcCCCCEEEEec-c-------cceEEEEEecCCccccee-eeeccc----CCceEEEECCCCcEEEEec
Confidence 21111 23356999999887554 2 234899999876432222 233333 5678899999998555555
Q ss_pred CCCCeeeEEEEecCCCeE
Q 006979 320 RKNGFWNLHKWIESNNEV 337 (623)
Q Consensus 320 ~~~g~~~L~~~d~~~~~~ 337 (623)
. . ..+..+|..+.+.
T Consensus 507 a-~--rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 507 A-S--RKVVLYDVASREV 521 (603)
T ss_pred c-C--CcEEEEEcccCce
Confidence 5 3 3566677766654
No 217
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=97.69 E-value=9.9e-05 Score=75.67 Aligned_cols=100 Identities=16% Similarity=0.229 Sum_probs=67.6
Q ss_pred CCCCEEEEecCCCCCcccCcCCHHhHHHHcC-ceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCC
Q 006979 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 571 (623)
Q Consensus 493 ~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~-G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~ 571 (623)
...|-||++||... ....|+.....+... |+.|+++|..|. |+... .+ .+ ......+....+..+......
T Consensus 56 ~~~~pvlllHGF~~--~~~~w~~~~~~L~~~~~~~v~aiDl~G~-g~~s~-~~--~~--~~y~~~~~v~~i~~~~~~~~~ 127 (326)
T KOG1454|consen 56 KDKPPVLLLHGFGA--SSFSWRRVVPLLSKAKGLRVLAIDLPGH-GYSSP-LP--RG--PLYTLRELVELIRRFVKEVFV 127 (326)
T ss_pred CCCCcEEEeccccC--CcccHhhhccccccccceEEEEEecCCC-CcCCC-CC--CC--CceehhHHHHHHHHHHHhhcC
Confidence 44577888999843 444555444445443 799999999993 32111 11 11 114566666666655544322
Q ss_pred CCCceEEEEcChHHHHHHHHh-cCCCceeEEE
Q 006979 572 DEKRLCITGGSAGGYTTLAAL-AFRDTFKAGA 602 (623)
Q Consensus 572 d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v 602 (623)
+++.++|||+||++++.++ .+|+.++..|
T Consensus 128 --~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv 157 (326)
T KOG1454|consen 128 --EPVSLVGHSLGGIVALKAAAYYPETVDSLV 157 (326)
T ss_pred --cceEEEEeCcHHHHHHHHHHhCccccccee
Confidence 4599999999999999999 8999999999
No 218
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=97.69 E-value=0.0014 Score=63.68 Aligned_cols=259 Identities=11% Similarity=-0.011 Sum_probs=142.8
Q ss_pred CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccee--eeecCCceEEEeCC-EEEEEeCC
Q 006979 88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTT--AQEYGGGAFRIFGD-TVIFSNYK 163 (623)
Q Consensus 88 ~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~--~~~~g~~~~~~s~d-~l~f~~~~ 163 (623)
...++..++|| |+.+ +. +.-+|-..+|.+..+ +.++-+- +.+... .++-...++.++.| .++.+...
T Consensus 213 KSh~EcA~FSPDgqyL--vs--gSvDGFiEVWny~~G---KlrKDLk--YQAqd~fMMmd~aVlci~FSRDsEMlAsGsq 283 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYL--VS--GSVDGFIEVWNYTTG---KLRKDLK--YQAQDNFMMMDDAVLCISFSRDSEMLASGSQ 283 (508)
T ss_pred ccchhheeeCCCCceE--ee--ccccceeeeehhccc---hhhhhhh--hhhhcceeecccceEEEeecccHHHhhccCc
Confidence 44567788898 5533 22 222577778877544 4433221 111100 01112334445544 44445556
Q ss_pred CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCC
Q 006979 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS 243 (623)
Q Consensus 164 ~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~ 243 (623)
||.|-++...+| .-.++.... -...+...+||.|+.+|+-...| ..+.+.-+.+|+. .+.+....
T Consensus 284 DGkIKvWri~tG-~ClRrFdrA---HtkGvt~l~FSrD~SqiLS~sfD---------~tvRiHGlKSGK~--LKEfrGHs 348 (508)
T KOG0275|consen 284 DGKIKVWRIETG-QCLRRFDRA---HTKGVTCLSFSRDNSQILSASFD---------QTVRIHGLKSGKC--LKEFRGHS 348 (508)
T ss_pred CCcEEEEEEecc-hHHHHhhhh---hccCeeEEEEccCcchhhccccc---------ceEEEeccccchh--HHHhcCcc
Confidence 777777777766 233443321 01224567799999888765554 3455556777762 23344445
Q ss_pred CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCC
Q 006979 244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN 322 (623)
Q Consensus 244 ~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~ 322 (623)
.+++...|++||.+|.-.+.|. .+-+.+..+.+.+...+. .+.+ ..+..+--.|.+- .+.+.++
T Consensus 349 Syvn~a~ft~dG~~iisaSsDg--------tvkvW~~KtteC~~Tfk~-~~~d----~~vnsv~~~PKnpeh~iVCNr-- 413 (508)
T KOG0275|consen 349 SYVNEATFTDDGHHIISASSDG--------TVKVWHGKTTECLSTFKP-LGTD----YPVNSVILLPKNPEHFIVCNR-- 413 (508)
T ss_pred ccccceEEcCCCCeEEEecCCc--------cEEEecCcchhhhhhccC-CCCc----ccceeEEEcCCCCceEEEEcC--
Confidence 6778888999999998666443 255556555433211111 1122 4555666667665 6667766
Q ss_pred CeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCcee-eccc
Q 006979 323 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDI 398 (623)
Q Consensus 323 g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~-~lt~ 398 (623)
...+|.++..+.-.+....+..+-+. |.--..+|.|.++|+..++ ..||.+...+|.++ .++.
T Consensus 414 -sntv~imn~qGQvVrsfsSGkREgGd---------Fi~~~lSpkGewiYcigED---~vlYCF~~~sG~LE~tl~V 477 (508)
T KOG0275|consen 414 -SNTVYIMNMQGQVVRSFSSGKREGGD---------FINAILSPKGEWIYCIGED---GVLYCFSVLSGKLERTLPV 477 (508)
T ss_pred -CCeEEEEeccceEEeeeccCCccCCc---------eEEEEecCCCcEEEEEccC---cEEEEEEeecCceeeeeec
Confidence 23588888877666666654333221 2111235588888887643 45788877777665 3443
No 219
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=97.66 E-value=0.00038 Score=69.11 Aligned_cols=179 Identities=14% Similarity=0.075 Sum_probs=103.8
Q ss_pred ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCc
Q 006979 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 272 (623)
Q Consensus 193 ~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~ 272 (623)
+-...|||+|++|+--..| +.+...|+++..- .........++...+|||||++||--.. .
T Consensus 118 Vl~~~fsp~g~~l~tGsGD---------~TvR~WD~~TeTp--~~t~KgH~~WVlcvawsPDgk~iASG~~--------d 178 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGSGD---------TTVRLWDLDTETP--LFTCKGHKNWVLCVAWSPDGKKIASGSK--------D 178 (480)
T ss_pred EEEEEecCCCceEEecCCC---------ceEEeeccCCCCc--ceeecCCccEEEEEEECCCcchhhcccc--------C
Confidence 3456799999988764433 3455567776540 2233344456777889999999985543 3
Q ss_pred eEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCC-----CCcEEEEEeCCCCeeeEEEEecCCCe-EEEEeecccc
Q 006979 273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS-----KGELFFVTDRKNGFWNLHKWIESNNE-VLAIYSLDAE 346 (623)
Q Consensus 273 ~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~-----DG~l~~~~~~~~g~~~L~~~d~~~~~-~~~l~~~~~~ 346 (623)
.+|.+.|..+++. .-+.+.+.. ..+...+|-| +.+++ .+..++|.-+|| |...+. .+.+......
T Consensus 179 g~I~lwdpktg~~--~g~~l~gH~----K~It~Lawep~hl~p~~r~l-as~skDg~vrIW--d~~~~~~~~~lsgHT~~ 249 (480)
T KOG0271|consen 179 GSIRLWDPKTGQQ--IGRALRGHK----KWITALAWEPLHLVPPCRRL-ASSSKDGSVRIW--DTKLGTCVRTLSGHTAS 249 (480)
T ss_pred CeEEEecCCCCCc--ccccccCcc----cceeEEeecccccCCCccce-ecccCCCCEEEE--EccCceEEEEeccCccc
Confidence 4588888877753 233445544 3445556644 44433 333335665665 433343 3333333333
Q ss_pred cccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCcceEeeeecCCEEE
Q 006979 347 FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLF 414 (623)
Q Consensus 347 ~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~~v~~~~~~~~~~~ 414 (623)
++-..| .|..++++...++.-++|+.. ++.-.+.|.....++..++-..++++
T Consensus 250 VTCvrw--------------GG~gliySgS~DrtIkvw~a~-dG~~~r~lkGHahwvN~lalsTdy~L 302 (480)
T KOG0271|consen 250 VTCVRW--------------GGEGLIYSGSQDRTIKVWRAL-DGKLCRELKGHAHWVNHLALSTDYVL 302 (480)
T ss_pred eEEEEE--------------cCCceEEecCCCceEEEEEcc-chhHHHhhcccchheeeeeccchhhh
Confidence 333344 566788888888888888764 34455666665555665544444433
No 220
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.66 E-value=0.0038 Score=61.06 Aligned_cols=90 Identities=13% Similarity=0.078 Sum_probs=54.0
Q ss_pred ccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCe
Q 006979 301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 380 (623)
Q Consensus 301 ~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~ 380 (623)
.++.-.+|++|...+...++ +=-..||.+|++.-+...+.-....+....|.++ -..|++. .|.
T Consensus 319 ~g~g~lafs~Ds~y~aTrnd-~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~------------~prL~vc---tg~ 382 (447)
T KOG4497|consen 319 CGAGKLAFSCDSTYAATRND-KYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPG------------RPRLVVC---TGK 382 (447)
T ss_pred cccceeeecCCceEEeeecC-CCCceEEEEechhhhhhhhhhhccceeEEEeCCC------------CceEEEE---cCC
Confidence 44566789999854444444 3345789999877765555544445566677763 2334433 366
Q ss_pred EEEEEEeCCCCceeecccCCcceEee
Q 006979 381 SYLGILDDFGHSLSLLDIPFTDIDNI 406 (623)
Q Consensus 381 ~~L~~~d~~~~~~~~lt~~~~~v~~~ 406 (623)
+|||...+.+-....++.+.-.+..+
T Consensus 383 srLY~W~psg~~~V~vP~~GF~i~~l 408 (447)
T KOG4497|consen 383 SRLYFWAPSGPRVVGVPKKGFNIQKL 408 (447)
T ss_pred ceEEEEcCCCceEEecCCCCceeeeE
Confidence 78998888775444554443334444
No 221
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=97.65 E-value=0.00039 Score=74.79 Aligned_cols=130 Identities=17% Similarity=0.180 Sum_probs=84.6
Q ss_pred CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcC-----CHHhHHHHcCceEEEEECCCC
Q 006979 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-----NLSIQYWTSRGWAFVDVNYGG 534 (623)
Q Consensus 460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~-----~~~~~~~a~~G~~v~~~d~rG 534 (623)
+|-.+.|... .+..+-|.|...+ ..+.|++|+ +.- ......+ +.+.++++++||-|+.++.+.
T Consensus 190 TPg~VV~~n~----l~eLiqY~P~te~-----v~~~PLLIV-Pp~--INK~YIlDL~P~~SlVr~lv~qG~~VflIsW~n 257 (560)
T TIGR01839 190 TEGAVVFRNE----VLELIQYKPITEQ-----QHARPLLVV-PPQ--INKFYIFDLSPEKSFVQYCLKNQLQVFIISWRN 257 (560)
T ss_pred CCCceeEECC----ceEEEEeCCCCCC-----cCCCcEEEe-chh--hhhhheeecCCcchHHHHHHHcCCeEEEEeCCC
Confidence 4556666542 3555667775421 344576664 433 2111112 468999999999999999987
Q ss_pred CCCCchhHHHhhccCCccch-HHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHH----Hh-cCCC-ceeEEEecccC
Q 006979 535 STGYGREFRERLLGRWGIVD-VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLA----AL-AFRD-TFKAGASLYGV 607 (623)
Q Consensus 535 s~~~g~~~~~~~~~~~g~~~-~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~----~~-~~~~-~f~a~v~~~g~ 607 (623)
-+ .+ ..+++..+ ++.+.+|++.+.+. ...++|-++|+|+||.+++. ++ .+++ +++.++.+..+
T Consensus 258 P~---~~-----~r~~~ldDYv~~i~~Ald~V~~~--tG~~~vnl~GyC~GGtl~a~~~a~~aA~~~~~~V~sltllatp 327 (560)
T TIGR01839 258 PD---KA-----HREWGLSTYVDALKEAVDAVRAI--TGSRDLNLLGACAGGLTCAALVGHLQALGQLRKVNSLTYLVSL 327 (560)
T ss_pred CC---hh-----hcCCCHHHHHHHHHHHHHHHHHh--cCCCCeeEEEECcchHHHHHHHHHHHhcCCCCceeeEEeeecc
Confidence 32 21 23344332 24677788888765 34579999999999999985 34 5675 79999988887
Q ss_pred CCHH
Q 006979 608 SIPV 611 (623)
Q Consensus 608 ~d~~ 611 (623)
.|..
T Consensus 328 lDf~ 331 (560)
T TIGR01839 328 LDST 331 (560)
T ss_pred cccC
Confidence 7753
No 222
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=97.64 E-value=0.027 Score=54.01 Aligned_cols=166 Identities=12% Similarity=0.128 Sum_probs=96.2
Q ss_pred eeecceeeCCC-CCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccce-ecccCC-CcccceeeCCCCCEEEEEEecCCC
Q 006979 191 VSYADGIFDPR-FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK-VLVSGS-DFYAFPRMDPRGERMAWIEWHHPN 267 (623)
Q Consensus 191 ~~~~d~~~sPd-G~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~-~l~~~~-~~~~~p~wSPDG~~la~~~~~~~~ 267 (623)
.|.-..+|+|- |. +++..... ..|.+.+..++..-..+ .|..+. ..+...+|||.|++|+-.+.|..
T Consensus 15 ~r~W~~awhp~~g~-ilAscg~D--------k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t- 84 (312)
T KOG0645|consen 15 DRVWSVAWHPGKGV-ILASCGTD--------KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT- 84 (312)
T ss_pred CcEEEEEeccCCce-EEEeecCC--------ceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce-
Confidence 46777889998 65 55655432 44666666643211122 233322 23556789999999998876642
Q ss_pred CCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEE---EEeecc
Q 006979 268 MPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL---AIYSLD 344 (623)
Q Consensus 268 ~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~---~l~~~~ 344 (623)
..||- +.++..+-...+.|.+ ..+..++|+++|.++....+ ...--||.+| .+++.. .|.+..
T Consensus 85 -----~~Iw~---k~~~efecv~~lEGHE----nEVK~Vaws~sG~~LATCSR-DKSVWiWe~d-eddEfec~aVL~~Ht 150 (312)
T KOG0645|consen 85 -----VVIWK---KEDGEFECVATLEGHE----NEVKCVAWSASGNYLATCSR-DKSVWIWEID-EDDEFECIAVLQEHT 150 (312)
T ss_pred -----EEEee---cCCCceeEEeeeeccc----cceeEEEEcCCCCEEEEeeC-CCeEEEEEec-CCCcEEEEeeecccc
Confidence 22332 1222223344566665 56778999999996555555 2333456665 334433 333444
Q ss_pred cccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCcee
Q 006979 345 AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 394 (623)
Q Consensus 345 ~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~ 394 (623)
.++....|.+ -.-|+++..-+..-++|+-+. +..+.
T Consensus 151 qDVK~V~WHP-------------t~dlL~S~SYDnTIk~~~~~~-dddW~ 186 (312)
T KOG0645|consen 151 QDVKHVIWHP-------------TEDLLFSCSYDNTIKVYRDED-DDDWE 186 (312)
T ss_pred ccccEEEEcC-------------CcceeEEeccCCeEEEEeecC-CCCee
Confidence 5666666664 345777777777788887765 44443
No 223
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=97.64 E-value=0.00018 Score=75.60 Aligned_cols=113 Identities=13% Similarity=0.087 Sum_probs=72.2
Q ss_pred CCCCEEEEecCCCCCcccC-----cC--CHHhHHH-------HcCceEEEEECCCCCCC--------CchhHHHhhcc--
Q 006979 493 EKPPLLVKSHGGPTSEARG-----IL--NLSIQYW-------TSRGWAFVDVNYGGSTG--------YGREFRERLLG-- 548 (623)
Q Consensus 493 ~~~Pliv~~hGg~~~~~~~-----~~--~~~~~~~-------a~~G~~v~~~d~rGs~~--------~g~~~~~~~~~-- 548 (623)
.+-++||++|+-.+..... .. ..+...+ =..-|-|+++|.-|++. .|....+...+
T Consensus 54 ~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p~~g~tgp~s~~p~tg~~ 133 (389)
T PRK06765 54 AKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDPNVITTGPASINPKTGKP 133 (389)
T ss_pred CCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCCCCCCCCCCCCCcCCCCc
Confidence 3458999999874322110 00 0111222 22459999999998642 22211111111
Q ss_pred ---CCccchHHHHHHHHHHHHhCCCCCCCceE-EEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979 549 ---RWGIVDVNDCCSCATFLVGSGKADEKRLC-ITGGSAGGYTTLAAL-AFRDTFKAGASLYGV 607 (623)
Q Consensus 549 ---~~g~~~~~D~~~~~~~l~~~~~~d~~rv~-i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~ 607 (623)
++....++|+.+++..++++-.+ +++. ++|+||||.+++..+ .+|++++.+|.+++-
T Consensus 134 ~~~~fP~~t~~d~~~~~~~ll~~lgi--~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~~ 195 (389)
T PRK06765 134 YGMDFPVVTILDFVRVQKELIKSLGI--ARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIGN 195 (389)
T ss_pred cCCCCCcCcHHHHHHHHHHHHHHcCC--CCceEEEEECHHHHHHHHHHHHChHhhheEEEEecC
Confidence 34456788988888877765333 6775 999999999999988 899999999988653
No 224
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.64 E-value=0.014 Score=56.35 Aligned_cols=227 Identities=12% Similarity=0.060 Sum_probs=128.3
Q ss_pred ceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 006979 148 GAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (623)
Q Consensus 148 ~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i 226 (623)
-+..|+.| +.+++...+|.|.++|.-+. .+...++-. ..-+..-+++|.|+++++---|+ .-.||-+
T Consensus 59 ~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt-nK~haipl~----s~WVMtCA~sPSg~~VAcGGLdN-------~Csiy~l 126 (343)
T KOG0286|consen 59 YAMDWSTDSRRIVSASQDGKLIVWDSFTT-NKVHAIPLP----SSWVMTCAYSPSGNFVACGGLDN-------KCSIYPL 126 (343)
T ss_pred eeeEecCCcCeEEeeccCCeEEEEEcccc-cceeEEecC----ceeEEEEEECCCCCeEEecCcCc-------eeEEEec
Confidence 34556666 66777778999999998775 234444432 34455678999999999864432 1345544
Q ss_pred EcC--CCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCc
Q 006979 227 ALN--GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT 304 (623)
Q Consensus 227 dl~--~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (623)
... .+.....+.|.....+..--+|-+|+. |.--+. .....+.|++++ .....+.+.. +.+.
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~dD~~-ilT~SG--------D~TCalWDie~g---~~~~~f~GH~----gDV~ 190 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLDDNH-ILTGSG--------DMTCALWDIETG---QQTQVFHGHT----GDVM 190 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcCCCc-eEecCC--------CceEEEEEcccc---eEEEEecCCc----ccEE
Confidence 433 222222344555556777777888876 443322 223566788877 3455666665 5566
Q ss_pred CceeCC-CCcEEEEEeCCCCeeeEEEEecCCCeEEEEee-cccccccccccccCcceeEEeecCCCCEEEEEEEECCeEE
Q 006979 305 EPKWSS-KGELFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY 382 (623)
Q Consensus 305 ~~~ws~-DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~-~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~ 382 (623)
....+| |++.+....- +....|| |...+.-++-.. .+.++ ++..|+| +|. -+.+-.+++.-+
T Consensus 191 slsl~p~~~ntFvSg~c-D~~aklW--D~R~~~c~qtF~ghesDI---------Nsv~ffP---~G~-afatGSDD~tcR 254 (343)
T KOG0286|consen 191 SLSLSPSDGNTFVSGGC-DKSAKLW--DVRSGQCVQTFEGHESDI---------NSVRFFP---SGD-AFATGSDDATCR 254 (343)
T ss_pred EEecCCCCCCeEEeccc-ccceeee--eccCcceeEeeccccccc---------ceEEEcc---CCC-eeeecCCCceeE
Confidence 777888 7754443322 3444554 555554444332 22233 4556663 544 445566788888
Q ss_pred EEEEeCCCCceeecccC--CcceEee-eecCCEEEEEEec
Q 006979 383 LGILDDFGHSLSLLDIP--FTDIDNI-TLGNDCLFVEGAS 419 (623)
Q Consensus 383 L~~~d~~~~~~~~lt~~--~~~v~~~-~~~~~~~~~~~~s 419 (623)
||-+..+ .++.....+ ...+.++ ....++++|.+.+
T Consensus 255 lyDlRaD-~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~ 293 (343)
T KOG0286|consen 255 LYDLRAD-QELAVYSHDSIICGITSVAFSKSGRLLFAGYD 293 (343)
T ss_pred EEeecCC-cEEeeeccCcccCCceeEEEcccccEEEeeec
Confidence 8755432 333332222 1224444 4556777777643
No 225
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=97.60 E-value=0.035 Score=55.35 Aligned_cols=248 Identities=13% Similarity=0.038 Sum_probs=121.5
Q ss_pred ceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 006979 148 GAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (623)
Q Consensus 148 ~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i 226 (623)
.+..++.| .++.+...+|.|.++...+| .....+... -....-..|+|.+..|++-..+ ..+|.+
T Consensus 110 t~~~FshdgtlLATGdmsG~v~v~~~stg-~~~~~~~~e----~~dieWl~WHp~a~illAG~~D---------GsvWmw 175 (399)
T KOG0296|consen 110 TCCSFSHDGTLLATGDMSGKVLVFKVSTG-GEQWKLDQE----VEDIEWLKWHPRAHILLAGSTD---------GSVWMW 175 (399)
T ss_pred EEEEEccCceEEEecCCCccEEEEEcccC-ceEEEeecc----cCceEEEEecccccEEEeecCC---------CcEEEE
Confidence 34555555 56666677888888888876 344455422 1112236799998877775544 568888
Q ss_pred EcCCCCcccceecccCC-CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcC
Q 006979 227 ALNGQNIQEPKVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE 305 (623)
Q Consensus 227 dl~~g~~~~~~~l~~~~-~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (623)
.+.++. .-++..|. .....-+|.||||+|+-... ...|.+.+..++.. ...+.+.+ . ....-
T Consensus 176 ~ip~~~---~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~--------dgti~~Wn~ktg~p---~~~~~~~e-~--~~~~~ 238 (399)
T KOG0296|consen 176 QIPSQA---LCKVMSGHNSPCTCGEFIPDGKRILTGYD--------DGTIIVWNPKTGQP---LHKITQAE-G--LELPC 238 (399)
T ss_pred ECCCcc---eeeEecCCCCCcccccccCCCceEEEEec--------CceEEEEecCCCce---eEEecccc-c--CcCCc
Confidence 887754 34444443 33444569999999976642 23478888887732 22222221 1 11223
Q ss_pred ceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEE
Q 006979 306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI 385 (623)
Q Consensus 306 ~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~ 385 (623)
...+.+|.+++..+. .+ ..+.++..+|+...........-.+.-..+.....+++.+.+= .|.....-+| .|.+
T Consensus 239 ~~~~~~~~~~~~g~~-e~--~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~l-pL~A~G~vdG--~i~i 312 (399)
T KOG0296|consen 239 ISLNLAGSTLTKGNS-EG--VACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKL-PLAACGSVDG--TIAI 312 (399)
T ss_pred cccccccceeEeccC-Cc--cEEEEccccceEEEecCCCCccccccchhhhhhhhhccccccc-chhhcccccc--eEEE
Confidence 334445555544444 23 2333444445444333210000000000011111222111111 1222222344 3555
Q ss_pred EeCCCCceeecccCCcceEee-eecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979 386 LDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (623)
Q Consensus 386 ~d~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~ 436 (623)
+|+....+|.+-.....|..+ ..+..+++.... ...++..|..+|+.
T Consensus 313 yD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~----~g~v~~wDaRtG~l 360 (399)
T KOG0296|consen 313 YDLAASTLRHICEHEDGVTKLKWLNTDYLLTACA----NGKVRQWDARTGQL 360 (399)
T ss_pred EecccchhheeccCCCceEEEEEcCcchheeecc----CceEEeeeccccce
Confidence 677776666554433345555 222233332222 24677777777753
No 226
>PTZ00420 coronin; Provisional
Probab=97.58 E-value=0.018 Score=63.24 Aligned_cols=220 Identities=10% Similarity=0.038 Sum_probs=115.6
Q ss_pred CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC--EEEEEeCCC
Q 006979 88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD--TVIFSNYKD 164 (623)
Q Consensus 88 ~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d--~l~f~~~~~ 164 (623)
...+..+.|+| .+.+...-. ++|...||..... +.....+.... ..-..|...+.+..++++ .++.+...+
T Consensus 74 ~~~V~~lafsP~~~~lLASgS---~DgtIrIWDi~t~--~~~~~~i~~p~-~~L~gH~~~V~sVaf~P~g~~iLaSgS~D 147 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGS---EDLTIRVWEIPHN--DESVKEIKDPQ-CILKGHKKKISIIDWNPMNYYIMCSSGFD 147 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEe---CCCeEEEEECCCC--Cccccccccce-EEeecCCCcEEEEEECCCCCeEEEEEeCC
Confidence 44567888888 455554432 3577777866432 11111000000 000012222445566654 456666678
Q ss_pred CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCC
Q 006979 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD 244 (623)
Q Consensus 165 ~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~ 244 (623)
+.|.++|+.++ .....+.. ........|+|+|+.|+....+ ..|.++|+.+++. +..+.....
T Consensus 148 gtIrIWDl~tg-~~~~~i~~-----~~~V~SlswspdG~lLat~s~D---------~~IrIwD~Rsg~~--i~tl~gH~g 210 (568)
T PTZ00420 148 SFVNIWDIENE-KRAFQINM-----PKKLSSLKWNIKGNLLSGTCVG---------KHMHIIDPRKQEI--ASSFHIHDG 210 (568)
T ss_pred CeEEEEECCCC-cEEEEEec-----CCcEEEEEECCCCCEEEEEecC---------CEEEEEECCCCcE--EEEEecccC
Confidence 88999999876 22233332 2345678899999988765543 4688899988762 223322111
Q ss_pred cc-c----ceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEe
Q 006979 245 FY-A----FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTD 319 (623)
Q Consensus 245 ~~-~----~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~ 319 (623)
.. . .-.||+|+++|+-...+.. ...+|.++|+...+. ..... ..+.. ...-.|.|.++..++|++-
T Consensus 211 ~~~s~~v~~~~fs~d~~~IlTtG~d~~----~~R~VkLWDlr~~~~--pl~~~-~ld~~--~~~L~p~~D~~tg~l~lsG 281 (568)
T PTZ00420 211 GKNTKNIWIDGLGGDDNYILSTGFSKN----NMREMKLWDLKNTTS--ALVTM-SIDNA--SAPLIPHYDESTGLIYLIG 281 (568)
T ss_pred CceeEEEEeeeEcCCCCEEEEEEcCCC----CccEEEEEECCCCCC--ceEEE-EecCC--ccceEEeeeCCCCCEEEEE
Confidence 11 1 1235799998887765542 234688889875321 11111 11100 2223467776644444444
Q ss_pred CCCCeeeEEEEecCCCeEEEEe
Q 006979 320 RKNGFWNLHKWIESNNEVLAIY 341 (623)
Q Consensus 320 ~~~g~~~L~~~d~~~~~~~~l~ 341 (623)
. |...|+.++...+....|.
T Consensus 282 k--GD~tIr~~e~~~~~~~~l~ 301 (568)
T PTZ00420 282 K--GDGNCRYYQHSLGSIRKVN 301 (568)
T ss_pred E--CCCeEEEEEccCCcEEeec
Confidence 3 3334555555555555554
No 227
>COG0627 Predicted esterase [General function prediction only]
Probab=97.58 E-value=0.00021 Score=72.35 Aligned_cols=120 Identities=23% Similarity=0.293 Sum_probs=71.9
Q ss_pred CCCCCEEEEecCCCCCc-ccCcCCHHhHHHHcCceEEEEECCC--CC----------CCCchhHHHhhccCCc--cchHH
Q 006979 492 EEKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYG--GS----------TGYGREFRERLLGRWG--IVDVN 556 (623)
Q Consensus 492 ~~~~Pliv~~hGg~~~~-~~~~~~~~~~~~a~~G~~v~~~d~r--Gs----------~~~g~~~~~~~~~~~g--~~~~~ 556 (623)
+.+.|++++.||-.... ....+...-....+.|++++.+|-. +. |+...-|.+.....|. ....+
T Consensus 51 ~~~ipV~~~l~G~t~~~~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~~~~~~q~~ 130 (316)
T COG0627 51 GRDIPVLYLLSGLTCNEPNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPWASGPYQWE 130 (316)
T ss_pred CCCCCEEEEeCCCCCCCCceEeccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCccccCccchh
Confidence 57788888888863221 1112233444456678888887322 10 0101112222222121 23345
Q ss_pred HHHH--HHHHHHhCCCCCCC--ceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHH
Q 006979 557 DCCS--CATFLVGSGKADEK--RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPV 611 (623)
Q Consensus 557 D~~~--~~~~l~~~~~~d~~--rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~ 611 (623)
+++. .-..+.+...++.+ +.+|.|+||||+-++.++ .||++|+.+.+++|+.+..
T Consensus 131 tfl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s 190 (316)
T COG0627 131 TFLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPS 190 (316)
T ss_pred HHHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceecccccccccc
Confidence 5442 22234445555553 899999999999999999 8899999999999998876
No 228
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=97.58 E-value=0.015 Score=55.96 Aligned_cols=226 Identities=10% Similarity=0.027 Sum_probs=128.9
Q ss_pred EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (623)
Q Consensus 156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~ 235 (623)
.|.|.....+.|=.+|..+| +.++..-+. ..+-......|||..+++ +.. ..|.++|.++.+
T Consensus 74 ~VWft~qg~gaiGhLdP~tG--ev~~ypLg~---Ga~Phgiv~gpdg~~Wit--d~~--------~aI~R~dpkt~e--- 135 (353)
T COG4257 74 AVWFTAQGTGAIGHLDPATG--EVETYPLGS---GASPHGIVVGPDGSAWIT--DTG--------LAIGRLDPKTLE--- 135 (353)
T ss_pred ceEEecCccccceecCCCCC--ceEEEecCC---CCCCceEEECCCCCeeEe--cCc--------ceeEEecCcccc---
Confidence 58888777777889999998 555544431 122223567899986654 211 468999988876
Q ss_pred ceec--c--cCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCC
Q 006979 236 PKVL--V--SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 311 (623)
Q Consensus 236 ~~~l--~--~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~D 311 (623)
++.. . .......++.|.|+|. |.|+....- .. .+|...+ ..+++.... . .....+.-.||
T Consensus 136 vt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q~G~-----yG---rLdPa~~----~i~vfpaPq-G--~gpyGi~atpd 199 (353)
T COG4257 136 VTRFPLPLEHADANLETAVFDPWGN-LWFTGQIGA-----YG---RLDPARN----VISVFPAPQ-G--GGPYGICATPD 199 (353)
T ss_pred eEEeecccccCCCcccceeeCCCcc-EEEeecccc-----ce---ecCcccC----ceeeeccCC-C--CCCcceEECCC
Confidence 4433 2 2334566788999997 777764321 11 2222222 222222211 1 34567888999
Q ss_pred CcEEEEEeCCCCeeeEEEEecCCCeEEEEeeccc--ccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCC
Q 006979 312 GELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA--EFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF 389 (623)
Q Consensus 312 G~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~--~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~ 389 (623)
|+++|.+-. + ..|.++|+.++..+++...+. .-..-.|+. .-+++.++ .-+...|+++|+.
T Consensus 200 Gsvwyasla--g-naiaridp~~~~aev~p~P~~~~~gsRriwsd------------pig~~wit--twg~g~l~rfdPs 262 (353)
T COG4257 200 GSVWYASLA--G-NAIARIDPFAGHAEVVPQPNALKAGSRRIWSD------------PIGRAWIT--TWGTGSLHRFDPS 262 (353)
T ss_pred CcEEEEecc--c-cceEEcccccCCcceecCCCcccccccccccC------------ccCcEEEe--ccCCceeeEeCcc
Confidence 998887654 2 258889988886666653222 112234542 12334433 3566789999999
Q ss_pred CCceeecccCCc--ceEee-eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979 390 GHSLSLLDIPFT--DIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (623)
Q Consensus 390 ~~~~~~lt~~~~--~v~~~-~~~~~~~~~~~~s~~~~~~ly~~~l~~~~ 435 (623)
...+.....+.. .-.++ ..+.+++.+.-.+ ...|.++|..+.+
T Consensus 263 ~~sW~eypLPgs~arpys~rVD~~grVW~sea~---agai~rfdpeta~ 308 (353)
T COG4257 263 VTSWIEYPLPGSKARPYSMRVDRHGRVWLSEAD---AGAIGRFDPETAR 308 (353)
T ss_pred cccceeeeCCCCCCCcceeeeccCCcEEeeccc---cCceeecCcccce
Confidence 888875544422 22223 3344555543222 2356666655554
No 229
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.57 E-value=0.017 Score=54.66 Aligned_cols=226 Identities=12% Similarity=0.028 Sum_probs=117.6
Q ss_pred CCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccC
Q 006979 163 KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG 242 (623)
Q Consensus 163 ~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~ 242 (623)
..+.|.++|+.++ .+.++..- +.....+....|.-||++.+-..+| ..+-+.|+..-. .+++...
T Consensus 59 ~~qhvRlyD~~S~--np~Pv~t~-e~h~kNVtaVgF~~dgrWMyTgseD---------gt~kIWdlR~~~---~qR~~~~ 123 (311)
T KOG0315|consen 59 GNQHVRLYDLNSN--NPNPVATF-EGHTKNVTAVGFQCDGRWMYTGSED---------GTVKIWDLRSLS---CQRNYQH 123 (311)
T ss_pred cCCeeEEEEccCC--CCCceeEE-eccCCceEEEEEeecCeEEEecCCC---------ceEEEEeccCcc---cchhccC
Confidence 4566889999887 44333221 1222445667788899876554443 446666776643 4444433
Q ss_pred CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCC
Q 006979 243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN 322 (623)
Q Consensus 243 ~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~ 322 (623)
..-++.....|+...|..- +.+ ..|++.|+...-. ...++++.+ ..+....-.|||+.+...+. .
T Consensus 124 ~spVn~vvlhpnQteLis~--dqs------g~irvWDl~~~~c--~~~liPe~~----~~i~sl~v~~dgsml~a~nn-k 188 (311)
T KOG0315|consen 124 NSPVNTVVLHPNQTELISG--DQS------GNIRVWDLGENSC--THELIPEDD----TSIQSLTVMPDGSMLAAANN-K 188 (311)
T ss_pred CCCcceEEecCCcceEEee--cCC------CcEEEEEccCCcc--ccccCCCCC----cceeeEEEcCCCcEEEEecC-C
Confidence 3445556788887777533 332 3489999876622 344555544 67888899999994444444 4
Q ss_pred CeeeEEEEecCCCe-EEEEeecccccccccccccCcceeEE-eecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCC
Q 006979 323 GFWNLHKWIESNNE-VLAIYSLDAEFSRPLWVFGINSYEII-QSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF 400 (623)
Q Consensus 323 g~~~L~~~d~~~~~-~~~l~~~~~~~~~~~w~~~~~~~~~l-~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~ 400 (623)
|...+| ++-++. ..++.+-.. +. -...+.+- -.|||+++|+-.+ .+....|+..+---+...+|+.++
T Consensus 189 G~cyvW--~l~~~~~~s~l~P~~k-~~------ah~~~il~C~lSPd~k~lat~s-sdktv~iwn~~~~~kle~~l~gh~ 258 (311)
T KOG0315|consen 189 GNCYVW--RLLNHQTASELEPVHK-FQ------AHNGHILRCLLSPDVKYLATCS-SDKTVKIWNTDDFFKLELVLTGHQ 258 (311)
T ss_pred ccEEEE--EccCCCccccceEhhh-ee------cccceEEEEEECCCCcEEEeec-CCceEEEEecCCceeeEEEeecCC
Confidence 654444 333322 222222100 00 00111100 0245777665444 455556665543212334566655
Q ss_pred cceEee-eecCCEEEEEEecCCCCCeEEEE
Q 006979 401 TDIDNI-TLGNDCLFVEGASGVEPSSVAKV 429 (623)
Q Consensus 401 ~~v~~~-~~~~~~~~~~~~s~~~~~~ly~~ 429 (623)
.++..- .+.+++.++++++. ...++|-+
T Consensus 259 rWvWdc~FS~dg~YlvTassd-~~~rlW~~ 287 (311)
T KOG0315|consen 259 RWVWDCAFSADGEYLVTASSD-HTARLWDL 287 (311)
T ss_pred ceEEeeeeccCccEEEecCCC-Cceeeccc
Confidence 454433 33344455555544 33455543
No 230
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=97.55 E-value=0.044 Score=53.69 Aligned_cols=296 Identities=17% Similarity=0.174 Sum_probs=140.0
Q ss_pred CcCCHHHHhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecC-CceEEEeC
Q 006979 77 SPLTADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYG-GGAFRIFG 154 (623)
Q Consensus 77 s~~t~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g-~~~~~~s~ 154 (623)
-|+.+..+-+-+..+..+.++. |..+.-.. +++...||..+.-.-.+- ...|+.+ +|+ .....+++
T Consensus 75 Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~----~Dr~Ir~w~~~DF~~~eH-------r~~R~nv-e~dhpT~V~Fap 142 (420)
T KOG2096|consen 75 HPLNVSVLKGHKKEVTDVAFSSDGKKLATIS----GDRSIRLWDVRDFENKEH-------RCIRQNV-EYDHPTRVVFAP 142 (420)
T ss_pred cchhhhhhhccCCceeeeEEcCCCceeEEEe----CCceEEEEecchhhhhhh-------hHhhccc-cCCCceEEEECC
Confidence 3566777777777888999976 55554443 235556665543210011 1122222 232 22334455
Q ss_pred C--EEEEEeCCCCcEEEEeCCCC--CCCceecCCCC-----CCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979 155 D--TVIFSNYKDQRLYKHSIDSK--DSSPLPITPDY-----GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (623)
Q Consensus 155 d--~l~f~~~~~~~l~~~d~~~g--~~~~~~Lt~~~-----~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~ 225 (623)
| .+++.-...+.|+++.+... +..+-..+... ..-.....+.-..-.+++|.-..++ +.|++
T Consensus 143 Dc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~d---------t~i~l 213 (420)
T KOG2096|consen 143 DCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLD---------TKICL 213 (420)
T ss_pred CcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCC---------CcEEE
Confidence 5 45555444555777765321 01111111110 0000001122233344444433332 56889
Q ss_pred EEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceee-eE--EEcCCCCCcccc
Q 006979 226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK-RV--CVAGFDPTIVES 302 (623)
Q Consensus 226 idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~-~~--~~~~~~~~~~~~ 302 (623)
+++.+.. +..+....-.....+.|||||.|+..... | ...+|-.-....|+..+ .+ .+.|.. ..
T Consensus 214 w~lkGq~---L~~idtnq~~n~~aavSP~GRFia~~gFT-p-----DVkVwE~~f~kdG~fqev~rvf~LkGH~----sa 280 (420)
T KOG2096|consen 214 WDLKGQL---LQSIDTNQSSNYDAAVSPDGRFIAVSGFT-P-----DVKVWEPIFTKDGTFQEVKRVFSLKGHQ----SA 280 (420)
T ss_pred EecCCce---eeeeccccccccceeeCCCCcEEEEecCC-C-----CceEEEEEeccCcchhhhhhhheeccch----hh
Confidence 9998544 34443333233456899999999866532 2 23345444444443221 22 234443 56
Q ss_pred CcCceeCCCCc-EEEEEeCCCCeeeEEEEecC---CCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEEC
Q 006979 303 PTEPKWSSKGE-LFFVTDRKNGFWNLHKWIES---NNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN 378 (623)
Q Consensus 303 ~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~---~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~ 378 (623)
+...+|+++.+ ++-++. +|.|+||-.|.. +...+.|..+ ..|.-..+.... -|..+|.++.|.++.
T Consensus 281 V~~~aFsn~S~r~vtvSk--DG~wriwdtdVrY~~~qDpk~Lk~g----~~pl~aag~~p~-RL~lsP~g~~lA~s~--- 350 (420)
T KOG2096|consen 281 VLAAAFSNSSTRAVTVSK--DGKWRIWDTDVRYEAGQDPKILKEG----SAPLHAAGSEPV-RLELSPSGDSLAVSF--- 350 (420)
T ss_pred eeeeeeCCCcceeEEEec--CCcEEEeeccceEecCCCchHhhcC----CcchhhcCCCce-EEEeCCCCcEEEeec---
Confidence 77889999998 554444 599999955532 1112222111 011111111111 233456777776654
Q ss_pred CeEEEEEEeCCCCcee-ecccC-CcceEee--eecCCEEEEEE
Q 006979 379 GRSYLGILDDFGHSLS-LLDIP-FTDIDNI--TLGNDCLFVEG 417 (623)
Q Consensus 379 g~~~L~~~d~~~~~~~-~lt~~-~~~v~~~--~~~~~~~~~~~ 417 (623)
.+.|-++..++|+.. .+..- .+.+..+ +++|.+++-.+
T Consensus 351 -gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 351 -GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG 392 (420)
T ss_pred -CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec
Confidence 234555555555432 22221 2335444 55566554443
No 231
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=97.52 E-value=0.00052 Score=60.28 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=71.0
Q ss_pred CCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhh-ccCCccchH-HHHHHHHHHHHhCC
Q 006979 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERL-LGRWGIVDV-NDCCSCATFLVGSG 569 (623)
Q Consensus 492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~-~~~~g~~~~-~D~~~~~~~l~~~~ 569 (623)
+..+-+||+.||...+..++.+...+..|+.+|+.|+.+|++-. ..-+..- ....+.... ...+.++..|.+.
T Consensus 11 g~~~~tilLaHGAGasmdSt~m~~~a~~la~~G~~vaRfefpYm----a~Rrtg~rkPp~~~~t~~~~~~~~~aql~~~- 85 (213)
T COG3571 11 GPAPVTILLAHGAGASMDSTSMTAVAAALARRGWLVARFEFPYM----AARRTGRRKPPPGSGTLNPEYIVAIAQLRAG- 85 (213)
T ss_pred CCCCEEEEEecCCCCCCCCHHHHHHHHHHHhCceeEEEeecchh----hhccccCCCCcCccccCCHHHHHHHHHHHhc-
Confidence 34456799999997777777777889999999999999997621 1000000 000111112 3345556666666
Q ss_pred CCCCCceEEEEcChHHHHHHHHh-c-CCCceeEEEec-ccC
Q 006979 570 KADEKRLCITGGSAGGYTTLAAL-A-FRDTFKAGASL-YGV 607 (623)
Q Consensus 570 ~~d~~rv~i~G~S~GG~~~~~~~-~-~~~~f~a~v~~-~g~ 607 (623)
.+...+.|-|+||||-++.+++ . +.+ +.+.+|+ ||+
T Consensus 86 -l~~gpLi~GGkSmGGR~aSmvade~~A~-i~~L~clgYPf 124 (213)
T COG3571 86 -LAEGPLIIGGKSMGGRVASMVADELQAP-IDGLVCLGYPF 124 (213)
T ss_pred -ccCCceeeccccccchHHHHHHHhhcCC-cceEEEecCcc
Confidence 3457899999999999999888 3 333 5565554 554
No 232
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.52 E-value=0.0028 Score=69.88 Aligned_cols=137 Identities=12% Similarity=0.070 Sum_probs=80.4
Q ss_pred CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc-ceecccC
Q 006979 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE-PKVLVSG 242 (623)
Q Consensus 164 ~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~-~~~l~~~ 242 (623)
|-.|-++++++. ...+.+... ...+....++|+|++|+.++-+ +.+++++++++.... ..-+...
T Consensus 117 D~~vK~~~~~D~-s~~~~lrgh----~apVl~l~~~p~~~fLAvss~d---------G~v~iw~~~~~~~~~tl~~v~k~ 182 (933)
T KOG1274|consen 117 DTAVKLLNLDDS-SQEKVLRGH----DAPVLQLSYDPKGNFLAVSSCD---------GKVQIWDLQDGILSKTLTGVDKD 182 (933)
T ss_pred ceeEEEEecccc-chheeeccc----CCceeeeeEcCCCCEEEEEecC---------ceEEEEEcccchhhhhcccCCcc
Confidence 334667776654 233333322 2345668899999999887664 678999998875310 1112222
Q ss_pred CC-----cccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEE
Q 006979 243 SD-----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFV 317 (623)
Q Consensus 243 ~~-----~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~ 317 (623)
.+ .+..|+|+|||.++++...++ .+-+++..+... .-.+.+..-. ..+....|+|.|+.+..
T Consensus 183 n~~~~s~i~~~~aW~Pk~g~la~~~~d~--------~Vkvy~r~~we~---~f~Lr~~~~s--s~~~~~~wsPnG~YiAA 249 (933)
T KOG1274|consen 183 NEFILSRICTRLAWHPKGGTLAVPPVDN--------TVKVYSRKGWEL---QFKLRDKLSS--SKFSDLQWSPNGKYIAA 249 (933)
T ss_pred ccccccceeeeeeecCCCCeEEeeccCC--------eEEEEccCCcee---heeecccccc--cceEEEEEcCCCcEEee
Confidence 23 356789999988888876554 377777776521 1122222101 22567899999984444
Q ss_pred EeCCCCeeeEE
Q 006979 318 TDRKNGFWNLH 328 (623)
Q Consensus 318 ~~~~~g~~~L~ 328 (623)
+.- +|.--||
T Consensus 250 s~~-~g~I~vW 259 (933)
T KOG1274|consen 250 STL-DGQILVW 259 (933)
T ss_pred ecc-CCcEEEE
Confidence 443 4543333
No 233
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.50 E-value=0.037 Score=53.62 Aligned_cols=199 Identities=11% Similarity=0.062 Sum_probs=118.9
Q ss_pred eeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCC
Q 006979 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW 270 (623)
Q Consensus 191 ~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~ 270 (623)
....+..|++|+++|+-.+.| ..|.+.|.-+..- +..++-...++..-++||.|+.+|--..|
T Consensus 56 ~Ki~~~~ws~Dsr~ivSaSqD---------GklIvWDs~TtnK--~haipl~s~WVMtCA~sPSg~~VAcGGLd------ 118 (343)
T KOG0286|consen 56 NKIYAMDWSTDSRRIVSASQD---------GKLIVWDSFTTNK--VHAIPLPSSWVMTCAYSPSGNFVACGGLD------ 118 (343)
T ss_pred cceeeeEecCCcCeEEeeccC---------CeEEEEEcccccc--eeEEecCceeEEEEEECCCCCeEEecCcC------
Confidence 346678899999998776554 5688899876531 45555556677888999999988866544
Q ss_pred CceEEEEEEecCC-CceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeec-ccccc
Q 006979 271 DKAELWVGYISEN-GDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL-DAEFS 348 (623)
Q Consensus 271 ~~~~L~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~-~~~~~ 348 (623)
+...||-+..... +.+...+.+.+.. .+++--.|.+|+.|+-. .|......+|.++++......+ ..++-
T Consensus 119 N~Csiy~ls~~d~~g~~~v~r~l~gHt----gylScC~f~dD~~ilT~----SGD~TCalWDie~g~~~~~f~GH~gDV~ 190 (343)
T KOG0286|consen 119 NKCSIYPLSTRDAEGNVRVSRELAGHT----GYLSCCRFLDDNHILTG----SGDMTCALWDIETGQQTQVFHGHTGDVM 190 (343)
T ss_pred ceeEEEecccccccccceeeeeecCcc----ceeEEEEEcCCCceEec----CCCceEEEEEcccceEEEEecCCcccEE
Confidence 3556665543322 2234566677776 78888899998865532 2444556678888876665532 22222
Q ss_pred cccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCc-eeecccCCcceEee-eecCCEEEEEEecCCCCCeE
Q 006979 349 RPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSV 426 (623)
Q Consensus 349 ~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~-~~~lt~~~~~v~~~-~~~~~~~~~~~~s~~~~~~l 426 (623)
... .+|.+...+++..-++...|| |...+. ++.....+.++..+ .-..+.-+.++++ ...-++
T Consensus 191 sls------------l~p~~~ntFvSg~cD~~aklW--D~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD-D~tcRl 255 (343)
T KOG0286|consen 191 SLS------------LSPSDGNTFVSGGCDKSAKLW--DVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD-DATCRL 255 (343)
T ss_pred EEe------------cCCCCCCeEEecccccceeee--eccCcceeEeecccccccceEEEccCCCeeeecCC-CceeEE
Confidence 221 223334455555556666666 444444 44455556667776 2333334444443 333345
Q ss_pred EEE
Q 006979 427 AKV 429 (623)
Q Consensus 427 y~~ 429 (623)
|-+
T Consensus 256 yDl 258 (343)
T KOG0286|consen 256 YDL 258 (343)
T ss_pred Eee
Confidence 543
No 234
>PRK07868 acyl-CoA synthetase; Validated
Probab=97.49 E-value=0.00087 Score=79.77 Aligned_cols=137 Identities=11% Similarity=-0.032 Sum_probs=79.5
Q ss_pred CCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCC---HHhHHHHcCceEEEEECCCCC
Q 006979 459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN---LSIQYWTSRGWAFVDVNYGGS 535 (623)
Q Consensus 459 ~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~---~~~~~~a~~G~~v~~~d~rGs 535 (623)
.+|.++.+... .+..+-|.|....-.. ...-|.||++||.+......... ....+|+++||.|+++|+..
T Consensus 37 ~tp~~vv~~~~----~~~l~~y~~~~~~~~~--~~~~~plllvhg~~~~~~~~d~~~~~s~v~~L~~~g~~v~~~d~G~- 109 (994)
T PRK07868 37 PSPFQIVESVP----MYRLRRYFPPDNRPGQ--PPVGPPVLMVHPMMMSADMWDVTRDDGAVGILHRAGLDPWVIDFGS- 109 (994)
T ss_pred CCCCcEEEEcC----cEEEEEeCCCCccccc--cCCCCcEEEECCCCCCccceecCCcccHHHHHHHCCCEEEEEcCCC-
Confidence 35556666542 2455556665421100 11236688899985544433322 24788999999999999632
Q ss_pred CCCchhHHHhhccCCcc-chHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cC-CCceeEEEecccCCCH
Q 006979 536 TGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AF-RDTFKAGASLYGVSIP 610 (623)
Q Consensus 536 ~~~g~~~~~~~~~~~g~-~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~-~~~f~a~v~~~g~~d~ 610 (623)
. ++.. ....+.. ..+.++.++++.+.+.. .+++.++|+|+||.+++.++ .+ +++++..|.+....|+
T Consensus 110 ~--~~~~---~~~~~~l~~~i~~l~~~l~~v~~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~ 179 (994)
T PRK07868 110 P--DKVE---GGMERNLADHVVALSEAIDTVKDVT---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDT 179 (994)
T ss_pred C--ChhH---cCccCCHHHHHHHHHHHHHHHHHhh---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEeccccc
Confidence 2 1110 0001111 11233455555555443 25899999999999998766 44 5688988876666554
No 235
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.47 E-value=0.016 Score=56.00 Aligned_cols=111 Identities=22% Similarity=0.234 Sum_probs=71.1
Q ss_pred eeecceeeCCCCC-EEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc--cCCCcccceeeCCCCCEEEEEEecCCC
Q 006979 191 VSYADGIFDPRFN-RYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV--SGSDFYAFPRMDPRGERMAWIEWHHPN 267 (623)
Q Consensus 191 ~~~~d~~~sPdG~-~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~--~~~~~~~~p~wSPDG~~la~~~~~~~~ 267 (623)
.|--+..++|--. -++|.+... +..+++|++++.. +..+. ++..||..-.|||||++||-.+.|...
T Consensus 68 aR~Hgi~~~p~~~ravafARrPG--------tf~~vfD~~~~~~--pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~ 137 (366)
T COG3490 68 ARGHGIAFHPALPRAVAFARRPG--------TFAMVFDPNGAQE--PVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDP 137 (366)
T ss_pred cccCCeecCCCCcceEEEEecCC--------ceEEEECCCCCcC--cEEEecccCceeecccccCCCCcEEEeecCCCCC
Confidence 3445677787554 455555432 6688999988763 34443 455688888999999999877755432
Q ss_pred CCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeC
Q 006979 268 MPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR 320 (623)
Q Consensus 268 ~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~ 320 (623)
+..-|-++|...+ ..+ +.+.+ ..-....+..|.+||+++.+.+-
T Consensus 138 ---~rGViGvYd~r~~----fqr-vgE~~-t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 138 ---NRGVIGVYDAREG----FQR-VGEFS-THGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred ---CCceEEEEecccc----cce-ecccc-cCCcCcceeEEecCCcEEEEeCC
Confidence 4667888888754 111 11111 11145678999999996666653
No 236
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=97.47 E-value=0.00043 Score=67.58 Aligned_cols=99 Identities=17% Similarity=0.193 Sum_probs=61.7
Q ss_pred CEEEEecCCCCCcccCcCCHHhHHHHc---CceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCC
Q 006979 496 PLLVKSHGGPTSEARGILNLSIQYWTS---RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 572 (623)
Q Consensus 496 Pliv~~hGg~~~~~~~~~~~~~~~~a~---~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d 572 (623)
|.|+++||.+.... .+......+.. + |.++.+|.||.|... .. ..........+..+.++-..
T Consensus 22 ~~i~~~hg~~~~~~--~~~~~~~~~~~~~~~-~~~~~~d~~g~g~s~----~~------~~~~~~~~~~~~~~~~~~~~- 87 (282)
T COG0596 22 PPLVLLHGFPGSSS--VWRPVFKVLPALAAR-YRVIAPDLRGHGRSD----PA------GYSLSAYADDLAALLDALGL- 87 (282)
T ss_pred CeEEEeCCCCCchh--hhHHHHHHhhccccc-eEEEEecccCCCCCC----cc------cccHHHHHHHHHHHHHHhCC-
Confidence 58999999964433 22222222222 3 999999999866544 00 01111112223333322112
Q ss_pred CCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979 573 EKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI 609 (623)
Q Consensus 573 ~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d 609 (623)
.++.++|||+||.+++.++ .+|+.++++|...+...
T Consensus 88 -~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~~~ 124 (282)
T COG0596 88 -EKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAPP 124 (282)
T ss_pred -CceEEEEecccHHHHHHHHHhcchhhheeeEecCCCC
Confidence 3499999999999999998 88999999998886543
No 237
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=97.40 E-value=0.00081 Score=67.83 Aligned_cols=113 Identities=17% Similarity=0.195 Sum_probs=74.0
Q ss_pred CCCCEEEEecCCCCCcccCcCC-----HHhHHHHcCc-------eEEEEECCCCCC-C-CchhHHHhhc----cCCccch
Q 006979 493 EKPPLLVKSHGGPTSEARGILN-----LSIQYWTSRG-------WAFVDVNYGGST-G-YGREFRERLL----GRWGIVD 554 (623)
Q Consensus 493 ~~~Pliv~~hGg~~~~~~~~~~-----~~~~~~a~~G-------~~v~~~d~rGs~-~-~g~~~~~~~~----~~~g~~~ 554 (623)
.+-.+||++|+-.+.+...... .+.+.+..-| |-|+++|.-|+. | .|..-....- .++....
T Consensus 49 ~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~t 128 (368)
T COG2021 49 EKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVIT 128 (368)
T ss_pred cCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCccc
Confidence 4456899999874433322211 2344444433 999999998865 2 2222221111 1344567
Q ss_pred HHHHHHHHHHHHhCCCCCCCceE-EEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979 555 VNDCCSCATFLVGSGKADEKRLC-ITGGSAGGYTTLAAL-AFRDTFKAGASLYGV 607 (623)
Q Consensus 555 ~~D~~~~~~~l~~~~~~d~~rv~-i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~ 607 (623)
++|.+.+-+.|++.=-| +|+. |+|+||||+.++.-+ .+|+++..+|.++.-
T Consensus 129 i~D~V~aq~~ll~~LGI--~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~ 181 (368)
T COG2021 129 IRDMVRAQRLLLDALGI--KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATA 181 (368)
T ss_pred HHHHHHHHHHHHHhcCc--ceEeeeeccChHHHHHHHHHHhChHHHhhhheeccc
Confidence 89999998888775334 5665 999999999999777 999988888877664
No 238
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=97.39 E-value=0.0014 Score=69.08 Aligned_cols=106 Identities=17% Similarity=0.172 Sum_probs=63.6
Q ss_pred eEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCcc
Q 006979 221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 300 (623)
Q Consensus 221 ~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~ 300 (623)
..|-+.|+.+++. .-.|....+-+...+|||||+++|-+.-| ..|.++....+. ..+..+..+ ..
T Consensus 700 ~Ti~lWDl~~~~~--~~~l~gHtdqIf~~AWSpdGr~~AtVcKD--------g~~rVy~Prs~e----~pv~Eg~gp-vg 764 (1012)
T KOG1445|consen 700 STIELWDLANAKL--YSRLVGHTDQIFGIAWSPDGRRIATVCKD--------GTLRVYEPRSRE----QPVYEGKGP-VG 764 (1012)
T ss_pred ceeeeeehhhhhh--hheeccCcCceeEEEECCCCcceeeeecC--------ceEEEeCCCCCC----CccccCCCC-cc
Confidence 5577779888762 22344445556678999999999988744 348888766552 223333221 00
Q ss_pred ccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEe
Q 006979 301 ESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY 341 (623)
Q Consensus 301 ~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~ 341 (623)
..-.++.|.-||+ ++++.-.+....+|-.||.++-..+.|.
T Consensus 765 tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~ 806 (1012)
T KOG1445|consen 765 TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLY 806 (1012)
T ss_pred CcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcce
Confidence 3345788999999 4444433344556777776554434443
No 239
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.37 E-value=0.085 Score=52.65 Aligned_cols=112 Identities=13% Similarity=0.151 Sum_probs=66.3
Q ss_pred ceEEEeCC--EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979 148 GAFRIFGD--TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (623)
Q Consensus 148 ~~~~~s~d--~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~ 225 (623)
.+..+.+| .++=....+..|.++|++++ .-.+|... ....+.-..|||||.++++.+-|.. ..||-
T Consensus 199 tsmqwn~dgt~l~tAS~gsssi~iWdpdtg--~~~pL~~~---glgg~slLkwSPdgd~lfaAt~dav-------frlw~ 266 (445)
T KOG2139|consen 199 TSMQWNEDGTILVTASFGSSSIMIWDPDTG--QKIPLIPK---GLGGFSLLKWSPDGDVLFAATCDAV-------FRLWQ 266 (445)
T ss_pred eEEEEcCCCCEEeecccCcceEEEEcCCCC--Cccccccc---CCCceeeEEEcCCCCEEEEecccce-------eeeeh
Confidence 34455555 33333445667999999987 55555532 0234556889999999988776531 33441
Q ss_pred EEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecC
Q 006979 226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE 282 (623)
Q Consensus 226 idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~ 282 (623)
.. ..+...+.+.. .+.+....|||+|+.|.|...-++ .||.+..++
T Consensus 267 --e~-q~wt~erw~lg-sgrvqtacWspcGsfLLf~~sgsp-------~lysl~f~~ 312 (445)
T KOG2139|consen 267 --EN-QSWTKERWILG-SGRVQTACWSPCGSFLLFACSGSP-------RLYSLTFDG 312 (445)
T ss_pred --hc-ccceecceecc-CCceeeeeecCCCCEEEEEEcCCc-------eEEEEeecC
Confidence 11 11111233322 225666789999999999985543 366665554
No 240
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.35 E-value=0.1 Score=54.86 Aligned_cols=133 Identities=13% Similarity=0.113 Sum_probs=71.5
Q ss_pred CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCC
Q 006979 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS 243 (623)
Q Consensus 164 ~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~ 243 (623)
.++|.++|..+| ...+-... .+.+...+.-++||-|+++++....+ .|-+++..+=..-..+.|- .
T Consensus 281 ~~~l~IWDI~tG-~lkrsF~~-~~~~~~~WP~frWS~DdKy~Arm~~~----------sisIyEtpsf~lld~Kslk--i 346 (698)
T KOG2314|consen 281 GQQLIIWDIATG-LLKRSFPV-IKSPYLKWPIFRWSHDDKYFARMTGN----------SISIYETPSFMLLDKKSLK--I 346 (698)
T ss_pred CceEEEEEcccc-chhcceec-cCCCccccceEEeccCCceeEEeccc----------eEEEEecCceeeecccccC--C
Confidence 356999999988 21111111 01112334457899999999887653 3444443221000001110 0
Q ss_pred CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeC
Q 006979 244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDR 320 (623)
Q Consensus 244 ~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~ 320 (623)
+-+.+.+|||-+.-|||-.-...+. ..++-++.+.....+..+.++. .+.....|-..|. |.+-.++
T Consensus 347 ~gIr~FswsP~~~llAYwtpe~~~~---parvtL~evPs~~~iRt~nlfn-------VsDckLhWQk~gdyLcvkvdR 414 (698)
T KOG2314|consen 347 SGIRDFSWSPTSNLLAYWTPETNNI---PARVTLMEVPSKREIRTKNLFN-------VSDCKLHWQKSGDYLCVKVDR 414 (698)
T ss_pred ccccCcccCCCcceEEEEcccccCC---cceEEEEecCccceeeecccee-------eeccEEEeccCCcEEEEEEEe
Confidence 1123457999999999987443332 3456666666553322222222 3335778999998 5555554
No 241
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.29 E-value=0.26 Score=57.57 Aligned_cols=141 Identities=5% Similarity=-0.000 Sum_probs=81.2
Q ss_pred EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCC-CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc
Q 006979 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (623)
Q Consensus 156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sP-dG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~ 234 (623)
..+++...++.|.++|+.++ .....+... ........|+| +++.|+....+ ..+.++|+.++..
T Consensus 546 ~~las~~~Dg~v~lWd~~~~-~~~~~~~~H----~~~V~~l~~~p~~~~~L~Sgs~D---------g~v~iWd~~~~~~- 610 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVARS-QLVTEMKEH----EKRVWSIDYSSADPTLLASGSDD---------GSVKLWSINQGVS- 610 (793)
T ss_pred CEEEEEeCCCeEEEEECCCC-eEEEEecCC----CCCEEEEEEcCCCCCEEEEEcCC---------CEEEEEECCCCcE-
Confidence 45666667888999999865 222333322 23466788997 67766554433 5688889887652
Q ss_pred cceecccCCCcccceee-CCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc
Q 006979 235 EPKVLVSGSDFYAFPRM-DPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 313 (623)
Q Consensus 235 ~~~~l~~~~~~~~~p~w-SPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~ 313 (623)
...+.. ........| +++|+.|+....+ ..|+++|+..... ....+.+.. ..+....|. |+.
T Consensus 611 -~~~~~~-~~~v~~v~~~~~~g~~latgs~d--------g~I~iwD~~~~~~--~~~~~~~h~----~~V~~v~f~-~~~ 673 (793)
T PLN00181 611 -IGTIKT-KANICCVQFPSESGRSLAFGSAD--------HKVYYYDLRNPKL--PLCTMIGHS----KTVSYVRFV-DSS 673 (793)
T ss_pred -EEEEec-CCCeEEEEEeCCCCCEEEEEeCC--------CeEEEEECCCCCc--cceEecCCC----CCEEEEEEe-CCC
Confidence 223322 223334567 5679988876533 3488889875421 122333433 355677886 566
Q ss_pred EEEEEeCCCCeeeEEE
Q 006979 314 LFFVTDRKNGFWNLHK 329 (623)
Q Consensus 314 l~~~~~~~~g~~~L~~ 329 (623)
.++.... ++.-+||-
T Consensus 674 ~lvs~s~-D~~ikiWd 688 (793)
T PLN00181 674 TLVSSST-DNTLKLWD 688 (793)
T ss_pred EEEEEEC-CCEEEEEe
Confidence 4444443 45555553
No 242
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=97.26 E-value=0.018 Score=64.72 Aligned_cols=115 Identities=13% Similarity=0.118 Sum_probs=68.6
Q ss_pred EEEEEeCCCCcEEEEeCCCCCCCceec-CCCCCCCCeeecceeeCCCCCEEEE-EEeccCCCCCCceeEEEEEEcCCCCc
Q 006979 156 TVIFSNYKDQRLYKHSIDSKDSSPLPI-TPDYGEPLVSYADGIFDPRFNRYVT-VREDRRQDALNSTTEIVAIALNGQNI 233 (623)
Q Consensus 156 ~l~f~~~~~~~l~~~d~~~g~~~~~~L-t~~~~~~~~~~~d~~~sPdG~~l~~-v~~~~~~~~~~~~~~L~~idl~~g~~ 233 (623)
+|+|+....++|.++|.++. .++.+ ... ......|.|||||++|+| +.-..-. ....||+.+|++...
T Consensus 320 kiAfv~~~~~~L~~~D~dG~--n~~~ve~~~----~~~i~sP~~SPDG~~vAY~ts~e~~~----g~s~vYv~~L~t~~~ 389 (912)
T TIGR02171 320 KLAFRNDVTGNLAYIDYTKG--ASRAVEIED----TISVYHPDISPDGKKVAFCTGIEGLP----GKSSVYVRNLNASGS 389 (912)
T ss_pred eEEEEEcCCCeEEEEecCCC--CceEEEecC----CCceecCcCCCCCCEEEEEEeecCCC----CCceEEEEehhccCC
Confidence 68998876668999999876 66666 443 334557899999999999 6443300 125699999987431
Q ss_pred ccceecccCCCcccceee--CCCCCE-EEEEEecCCC---CCCCceEEEEEEecCC
Q 006979 234 QEPKVLVSGSDFYAFPRM--DPRGER-MAWIEWHHPN---MPWDKAELWVGYISEN 283 (623)
Q Consensus 234 ~~~~~l~~~~~~~~~p~w--SPDG~~-la~~~~~~~~---~p~~~~~L~v~d~~~~ 283 (623)
. +..|.- +..+-|+| .+.|.+ |+|++.-..+ -.|....-|.+....|
T Consensus 390 ~-~vkl~v--e~aaiprwrv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~~g 442 (912)
T TIGR02171 390 G-LVKLPV--ENAAIPRWRVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFANG 442 (912)
T ss_pred C-ceEeec--ccccccceEecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEecCC
Confidence 1 222321 22344665 566655 5666521111 1233334566666543
No 243
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=97.25 E-value=0.00063 Score=45.73 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=24.8
Q ss_pred eecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEE
Q 006979 237 KVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWV 277 (623)
Q Consensus 237 ~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v 277 (623)
++++........|.|||||++|+|++.... ....+||+
T Consensus 2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~---~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRND---RGSFDIYV 39 (39)
T ss_dssp EEES-SSSSEEEEEE-TTSSEEEEEEECT-----SSEEEEE
T ss_pred cCcccCCccccCEEEecCCCEEEEEecCCC---CCCcCEEC
Confidence 456666666778999999999999985441 12455664
No 244
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.22 E-value=0.37 Score=52.06 Aligned_cols=168 Identities=13% Similarity=0.161 Sum_probs=94.1
Q ss_pred ccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEE
Q 006979 240 VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT 318 (623)
Q Consensus 240 ~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~ 318 (623)
+.+.++...-+.||||.+|++-.-. ...||....+.. +.... +.... ..........++-|+. +++++
T Consensus 379 ~k~~~nIs~~aiSPdg~~Ia~st~~-------~~~iy~L~~~~~--vk~~~-v~~~~-~~~~~a~~i~ftid~~k~~~~s 447 (691)
T KOG2048|consen 379 TKEKENISCAAISPDGNLIAISTVS-------RTKIYRLQPDPN--VKVIN-VDDVP-LALLDASAISFTIDKNKLFLVS 447 (691)
T ss_pred cCCccceeeeccCCCCCEEEEeecc-------ceEEEEeccCcc--eeEEE-eccch-hhhccceeeEEEecCceEEEEe
Confidence 4556666767899999999987633 344666655442 12222 22111 1113456778888888 55555
Q ss_pred eCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeeccc
Q 006979 319 DRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI 398 (623)
Q Consensus 319 ~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~ 398 (623)
. ....|..+++++...+.+...... .-.+....+.. +++|+++...+ +...|+.+++++++.+.|..
T Consensus 448 ~---~~~~le~~el~~ps~kel~~~~~~----~~~~~I~~l~~---SsdG~yiaa~~---t~g~I~v~nl~~~~~~~l~~ 514 (691)
T KOG2048|consen 448 K---NIFSLEEFELETPSFKELKSIQSQ----AKCPSISRLVV---SSDGNYIAAIS---TRGQIFVYNLETLESHLLKV 514 (691)
T ss_pred c---ccceeEEEEecCcchhhhhccccc----cCCCcceeEEE---cCCCCEEEEEe---ccceEEEEEcccceeecchh
Confidence 2 234455566656554444322111 11122233333 34899888776 56679999999988876652
Q ss_pred -CCcceEee--e-ecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979 399 -PFTDIDNI--T-LGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (623)
Q Consensus 399 -~~~~v~~~--~-~~~~~~~~~~~s~~~~~~ly~~~l~~~~ 435 (623)
..-.+... . .+.+++++..++ .++|.++++..+
T Consensus 515 rln~~vTa~~~~~~~~~~lvvats~----nQv~efdi~~~~ 551 (691)
T KOG2048|consen 515 RLNIDVTAAAFSPFVRNRLVVATSN----NQVFEFDIEARN 551 (691)
T ss_pred ccCcceeeeeccccccCcEEEEecC----CeEEEEecchhh
Confidence 22233322 3 445556555443 578999885444
No 245
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=97.22 E-value=0.0016 Score=63.15 Aligned_cols=100 Identities=17% Similarity=0.220 Sum_probs=59.2
Q ss_pred CEEEEecCCCCCcccCcCCHHhHHH--------HcCceEEEEECCCCCCC--CchhHHHhhccCCccchHHHHHHHHHHH
Q 006979 496 PLLVKSHGGPTSEARGILNLSIQYW--------TSRGWAFVDVNYGGSTG--YGREFRERLLGRWGIVDVNDCCSCATFL 565 (623)
Q Consensus 496 Pliv~~hGg~~~~~~~~~~~~~~~~--------a~~G~~v~~~d~rGs~~--~g~~~~~~~~~~~g~~~~~D~~~~~~~l 565 (623)
.-|||+||..++ ...+......+ ....+.++.+||..... +|... ....+-+..+++++
T Consensus 5 ~pVlFIhG~~Gs--~~q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~s~~~g~~l---------~~q~~~~~~~i~~i 73 (225)
T PF07819_consen 5 IPVLFIHGNAGS--YKQVRSLASELQRKALLNDNSSHFDFFTVDFNEELSAFHGRTL---------QRQAEFLAEAIKYI 73 (225)
T ss_pred CEEEEECcCCCC--HhHHHHHHHHHhhhhhhccCccceeEEEeccCccccccccccH---------HHHHHHHHHHHHHH
Confidence 358889996333 22222222222 23458889999875221 12211 11234455666666
Q ss_pred HhCC---CCCCCceEEEEcChHHHHHHHHhcC----CCceeEEEeccc
Q 006979 566 VGSG---KADEKRLCITGGSAGGYTTLAALAF----RDTFKAGASLYG 606 (623)
Q Consensus 566 ~~~~---~~d~~rv~i~G~S~GG~~~~~~~~~----~~~f~a~v~~~g 606 (623)
.+.. ...+++|.++||||||.++-.++.. ++.++.+|...-
T Consensus 74 ~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~t 121 (225)
T PF07819_consen 74 LELYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGT 121 (225)
T ss_pred HHhhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcC
Confidence 5542 4567899999999999999888733 346777776643
No 246
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.20 E-value=0.0037 Score=61.92 Aligned_cols=113 Identities=16% Similarity=0.147 Sum_probs=70.9
Q ss_pred eeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc-cCCCcccceeeCCCCCEEEEEEecCCCCC
Q 006979 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMP 269 (623)
Q Consensus 191 ~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~-~~~~~~~~p~wSPDG~~la~~~~~~~~~p 269 (623)
.-+....|.+||..++-..-.. ..|.+.|++++. ..+|. .+..-.....|||||.+|+-.+-|.
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~gs--------ssi~iWdpdtg~---~~pL~~~glgg~slLkwSPdgd~lfaAt~da---- 260 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASFGS--------SSIMIWDPDTGQ---KIPLIPKGLGGFSLLKWSPDGDVLFAATCDA---- 260 (445)
T ss_pred ceeeEEEEcCCCCEEeecccCc--------ceEEEEcCCCCC---cccccccCCCceeeEEEcCCCCEEEEecccc----
Confidence 4456788999998776554332 678888999887 45554 4444455689999999887665442
Q ss_pred CCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEec
Q 006979 270 WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE 332 (623)
Q Consensus 270 ~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~ 332 (623)
..+||-..- .-. .+++.+ +. +++....|+|+|+ |+|... |...||.+.-
T Consensus 261 --vfrlw~e~q-~wt--~erw~l-gs-----grvqtacWspcGsfLLf~~s---gsp~lysl~f 310 (445)
T KOG2139|consen 261 --VFRLWQENQ-SWT--KERWIL-GS-----GRVQTACWSPCGSFLLFACS---GSPRLYSLTF 310 (445)
T ss_pred --eeeeehhcc-cce--ecceec-cC-----CceeeeeecCCCCEEEEEEc---CCceEEEEee
Confidence 334442110 110 123332 22 4678899999999 666653 4556776543
No 247
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=97.20 E-value=0.0019 Score=69.65 Aligned_cols=129 Identities=16% Similarity=0.224 Sum_probs=80.2
Q ss_pred CeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCc----------------CCHHhHHHHcCceEEEEEC-CCC
Q 006979 472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI----------------LNLSIQYWTSRGWAFVDVN-YGG 534 (623)
Q Consensus 472 g~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~----------------~~~~~~~~a~~G~~v~~~d-~rG 534 (623)
+..+..|++...+. .+..|+||+++|||+...... +.....-|.+.+ .++.+| .+|
T Consensus 60 ~~~lFyw~~~s~~~------~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~~-~~l~iDqP~G 132 (462)
T PTZ00472 60 DKHYFYWAFGPRNG------NPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNEA-YVIYVDQPAG 132 (462)
T ss_pred CceEEEEEEEcCCC------CCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCccccccc-CeEEEeCCCC
Confidence 56788888877652 456799999999997543221 111233466664 555566 556
Q ss_pred CCCCchhHHHhhccCCc---cchHHHHHHHHHHHH-hCCCCCCCceEEEEcChHHHHHHHHh-c---CC-------Ccee
Q 006979 535 STGYGREFRERLLGRWG---IVDVNDCCSCATFLV-GSGKADEKRLCITGGSAGGYTTLAAL-A---FR-------DTFK 599 (623)
Q Consensus 535 s~~~g~~~~~~~~~~~g---~~~~~D~~~~~~~l~-~~~~~d~~rv~i~G~S~GG~~~~~~~-~---~~-------~~f~ 599 (623)
.| +... +. ..+. ....+|+...++... +.+.....++.|+|+||||..+-.++ . +. =-++
T Consensus 133 ~G-~S~~--~~--~~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLk 207 (462)
T PTZ00472 133 VG-FSYA--DK--ADYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLA 207 (462)
T ss_pred cC-cccC--CC--CCCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeE
Confidence 43 3221 11 1111 223577777777544 34445568999999999999886665 2 11 1378
Q ss_pred EEEecccCCCHHH
Q 006979 600 AGASLYGVSIPVI 612 (623)
Q Consensus 600 a~v~~~g~~d~~~ 612 (623)
+++...|.+|...
T Consensus 208 Gi~IGNg~~dp~~ 220 (462)
T PTZ00472 208 GLAVGNGLTDPYT 220 (462)
T ss_pred EEEEeccccChhh
Confidence 9999999888753
No 248
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.18 E-value=0.0044 Score=60.64 Aligned_cols=142 Identities=11% Similarity=0.132 Sum_probs=84.6
Q ss_pred eeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEE
Q 006979 196 GIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAEL 275 (623)
Q Consensus 196 ~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L 275 (623)
-.+||+|++|+.... .+|.+-|..+=+ +.+|..--+.+....|+.|.-+|......++ .+
T Consensus 14 c~fSp~g~yiAs~~~----------yrlviRd~~tlq---~~qlf~cldki~yieW~ads~~ilC~~yk~~-------~v 73 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSR----------YRLVIRDSETLQ---LHQLFLCLDKIVYIEWKADSCHILCVAYKDP-------KV 73 (447)
T ss_pred eeECCCCCeeeeeee----------eEEEEeccchhh---HHHHHHHHHHhhheeeeccceeeeeeeeccc-------eE
Confidence 359999999987644 567777776655 4455443445566789999998887765544 26
Q ss_pred EEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccc
Q 006979 276 WVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF 354 (623)
Q Consensus 276 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~ 354 (623)
.+.++...+ -.-.+.... ..+....|||||+ ++..+.. .-+|-++.+.+.+-..+.......
T Consensus 74 qvwsl~Qpe---w~ckIdeg~----agls~~~WSPdgrhiL~tseF---~lriTVWSL~t~~~~~~~~pK~~~------- 136 (447)
T KOG4497|consen 74 QVWSLVQPE---WYCKIDEGQ----AGLSSISWSPDGRHILLTSEF---DLRITVWSLNTQKGYLLPHPKTNV------- 136 (447)
T ss_pred EEEEeecce---eEEEeccCC----CcceeeeECCCcceEeeeecc---eeEEEEEEeccceeEEecccccCc-------
Confidence 666765441 111222222 4677899999998 6666554 234444444454433333222122
Q ss_pred cCcceeEEeecCCCCEEEEEEEECC
Q 006979 355 GINSYEIIQSHGEKNLIACSYRQNG 379 (623)
Q Consensus 355 ~~~~~~~l~~s~~~~~l~~~~~~~g 379 (623)
..+.|.+ ||+...+.++++-
T Consensus 137 --kg~~f~~---dg~f~ai~sRrDC 156 (447)
T KOG4497|consen 137 --KGYAFHP---DGQFCAILSRRDC 156 (447)
T ss_pred --eeEEECC---CCceeeeeecccH
Confidence 2344443 7777777776653
No 249
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=97.14 E-value=0.0013 Score=62.94 Aligned_cols=88 Identities=16% Similarity=0.218 Sum_probs=50.7
Q ss_pred EEEecCCCCCcccCcCCHHhHHHHcCceE---EEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCC
Q 006979 498 LVKSHGGPTSEARGILNLSIQYWTSRGWA---FVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (623)
Q Consensus 498 iv~~hGg~~~~~~~~~~~~~~~~a~~G~~---v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~ 574 (623)
||++||-. ......|...+++|.++||. |+.++|..... ........ ........+.+.|+.+++. .-.
T Consensus 4 VVlVHG~~-~~~~~~w~~~~~~l~~~GY~~~~vya~tyg~~~~--~~~~~~~~--~~~~~~~~l~~fI~~Vl~~--TGa- 75 (219)
T PF01674_consen 4 VVLVHGTG-GNAYSNWSTLAPYLKAAGYCDSEVYALTYGSGNG--SPSVQNAH--MSCESAKQLRAFIDAVLAY--TGA- 75 (219)
T ss_dssp EEEE--TT-TTTCGGCCHHHHHHHHTT--CCCEEEE--S-CCH--HTHHHHHH--B-HHHHHHHHHHHHHHHHH--HT--
T ss_pred EEEECCCC-cchhhCHHHHHHHHHHcCCCcceeEeccCCCCCC--CCcccccc--cchhhHHHHHHHHHHHHHh--hCC-
Confidence 56699983 22556788999999999999 79999854322 11111111 1122335566666666543 225
Q ss_pred ceEEEEcChHHHHHHHHhc
Q 006979 575 RLCITGGSAGGYTTLAALA 593 (623)
Q Consensus 575 rv~i~G~S~GG~~~~~~~~ 593 (623)
||=|+|||+||.++-+++.
T Consensus 76 kVDIVgHS~G~~iaR~yi~ 94 (219)
T PF01674_consen 76 KVDIVGHSMGGTIARYYIK 94 (219)
T ss_dssp -EEEEEETCHHHHHHHHHH
T ss_pred EEEEEEcCCcCHHHHHHHH
Confidence 9999999999999988873
No 250
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=97.13 E-value=0.0011 Score=67.99 Aligned_cols=112 Identities=12% Similarity=0.138 Sum_probs=61.1
Q ss_pred CCCCCEEEEecCCCCCc-ccCcCCHHhHHH-Hc--CceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHh
Q 006979 492 EEKPPLLVKSHGGPTSE-ARGILNLSIQYW-TS--RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVG 567 (623)
Q Consensus 492 ~~~~Pliv~~hGg~~~~-~~~~~~~~~~~~-a~--~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~ 567 (623)
+...|++|++||..... ...........+ .. +.+.|+++|+..... ..|..+.... ...-+.+...++.|.+
T Consensus 68 n~~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~--~~Y~~a~~n~--~~vg~~la~~l~~L~~ 143 (331)
T PF00151_consen 68 NPSKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGAS--NNYPQAVANT--RLVGRQLAKFLSFLIN 143 (331)
T ss_dssp -TTSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHS--S-HHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhcc--ccccchhhhH--HHHHHHHHHHHHHHHh
Confidence 34679999999985554 222233344434 34 589999999763211 1232221110 0112334455667775
Q ss_pred CCCCCCCceEEEEcChHHHHHHHHh-cCCC--ceeEEEecccC
Q 006979 568 SGKADEKRLCITGGSAGGYTTLAAL-AFRD--TFKAGASLYGV 607 (623)
Q Consensus 568 ~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~--~f~a~v~~~g~ 607 (623)
...+++++|-|+|||+|++++..+. .... .+..+..+.|.
T Consensus 144 ~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPA 186 (331)
T PF00151_consen 144 NFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPA 186 (331)
T ss_dssp HH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B
T ss_pred hcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCcc
Confidence 5458899999999999999999998 4444 56666666554
No 251
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.25 Score=52.12 Aligned_cols=204 Identities=14% Similarity=0.126 Sum_probs=119.9
Q ss_pred cceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCce
Q 006979 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 273 (623)
Q Consensus 194 ~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~ 273 (623)
.....+++|++++....+. +.+.++|..+.+. ...+.-+. ......++|||++++...... ...
T Consensus 77 ~~i~v~~~~~~vyv~~~~~--------~~v~vid~~~~~~--~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~-----~~~ 140 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDS--------NTVSVIDTATNTV--LGSIPVGL-GPVGLAVDPDGKYVYVANAGN-----GNN 140 (381)
T ss_pred cceeeCCCCCeEEEecCCC--------CeEEEEcCcccce--eeEeeecc-CCceEEECCCCCEEEEEeccc-----CCc
Confidence 3456888998877665432 6688999766542 12222222 233467999999998775321 145
Q ss_pred EEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecc--ccccccc
Q 006979 274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLD--AEFSRPL 351 (623)
Q Consensus 274 ~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~--~~~~~~~ 351 (623)
.+.++|-.+... ......+. .......+|+|+.+|+.+. +...|..+|.++....+ .... .....
T Consensus 141 ~vsvid~~t~~~--~~~~~vG~------~P~~~a~~p~g~~vyv~~~--~~~~v~vi~~~~~~v~~-~~~~~~~~~~~-- 207 (381)
T COG3391 141 TVSVIDAATNKV--TATIPVGN------TPTGVAVDPDGNKVYVTNS--DDNTVSVIDTSGNSVVR-GSVGSLVGVGT-- 207 (381)
T ss_pred eEEEEeCCCCeE--EEEEecCC------CcceEEECCCCCeEEEEec--CCCeEEEEeCCCcceec-cccccccccCC--
Confidence 688888776632 11122222 2357889999996666664 45578888877665543 2110 11111
Q ss_pred ccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCcc---eE-eeeecCCEEEEEEecCCCCCeEE
Q 006979 352 WVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTD---ID-NITLGNDCLFVEGASGVEPSSVA 427 (623)
Q Consensus 352 w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~~---v~-~~~~~~~~~~~~~~s~~~~~~ly 427 (623)
......+ +++++.+|+....+....+..+|..++.+.....+... .. .+.++++.+|+.... ...++
T Consensus 208 ---~P~~i~v---~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~---~~~V~ 278 (381)
T COG3391 208 ---GPAGIAV---DPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ---GGTVS 278 (381)
T ss_pred ---CCceEEE---CCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC---CCeEE
Confidence 1111222 23788888877655556888999988877655322111 11 226777777666443 56788
Q ss_pred EEEcCCCc
Q 006979 428 KVTLDDHK 435 (623)
Q Consensus 428 ~~~l~~~~ 435 (623)
.++..+..
T Consensus 279 vid~~~~~ 286 (381)
T COG3391 279 VIDGATDR 286 (381)
T ss_pred EEeCCCCc
Confidence 88876655
No 252
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=97.08 E-value=0.0036 Score=64.39 Aligned_cols=62 Identities=16% Similarity=0.073 Sum_probs=50.1
Q ss_pred cCCccchHHHHHHHHHHHHhCCC--CCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979 548 GRWGIVDVNDCCSCATFLVGSGK--ADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI 609 (623)
Q Consensus 548 ~~~g~~~~~D~~~~~~~l~~~~~--~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d 609 (623)
.++|.....|++.|+.++.+.-. -+.-++.+.|+|+|||++.+++ -.|..|.+++-.++.+-
T Consensus 156 QN~GIMqAiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~ 220 (403)
T PF11144_consen 156 QNFGIMQAIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYAL 220 (403)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCcccc
Confidence 35777778899999999988622 2234899999999999999999 56999999998877653
No 253
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=97.08 E-value=0.0025 Score=63.57 Aligned_cols=112 Identities=15% Similarity=0.171 Sum_probs=70.9
Q ss_pred CCEEEEecCCCCCcccCcCCHHhHHHH---cCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHH----HHHHHHHh
Q 006979 495 PPLLVKSHGGPTSEARGILNLSIQYWT---SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCC----SCATFLVG 567 (623)
Q Consensus 495 ~Pliv~~hGg~~~~~~~~~~~~~~~~a---~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~----~~~~~l~~ 567 (623)
.++||++.|.|+... .|....+.+. ...|.|+.+.+.|.......-. ...+......+|.+ +.++.+..
T Consensus 2 ~~li~~IPGNPGlv~--fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~~~--~~~~~~~~sL~~QI~hk~~~i~~~~~ 77 (266)
T PF10230_consen 2 RPLIVFIPGNPGLVE--FYEEFLSALYEKLNPQFEILGISHAGHSTSPSNSK--FSPNGRLFSLQDQIEHKIDFIKELIP 77 (266)
T ss_pred cEEEEEECCCCChHH--HHHHHHHHHHHhCCCCCeeEEecCCCCcCCccccc--ccCCCCccCHHHHHHHHHHHHHHHhh
Confidence 478999999986443 3333444444 4589999999998654333200 00122233455544 34444444
Q ss_pred CCCCCCCceEEEEcChHHHHHHHHh-cCC---CceeEEEecccC-CCH
Q 006979 568 SGKADEKRLCITGGSAGGYTTLAAL-AFR---DTFKAGASLYGV-SIP 610 (623)
Q Consensus 568 ~~~~d~~rv~i~G~S~GG~~~~~~~-~~~---~~f~a~v~~~g~-~d~ 610 (623)
+..-...++.++|||.|+|+++.++ +++ ..++.++...|. .|+
T Consensus 78 ~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi~~i 125 (266)
T PF10230_consen 78 QKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTIEDI 125 (266)
T ss_pred hhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCccccc
Confidence 3221357999999999999999999 667 577888888885 444
No 254
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.054 Score=57.58 Aligned_cols=176 Identities=7% Similarity=0.046 Sum_probs=101.1
Q ss_pred CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979 147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (623)
Q Consensus 147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~ 225 (623)
..++.++++ ..+.+...+|.+.++|.... ...+.+... ...|....+|.. ..+.....+ ..|..
T Consensus 220 vtSv~ws~~G~~LavG~~~g~v~iwD~~~~-k~~~~~~~~---h~~rvg~laW~~--~~lssGsr~---------~~I~~ 284 (484)
T KOG0305|consen 220 VTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ-KKTRTLRGS---HASRVGSLAWNS--SVLSSGSRD---------GKILN 284 (484)
T ss_pred eEEEEECCCCCEEEEeecCCeEEEEehhhc-cccccccCC---cCceeEEEeccC--ceEEEecCC---------CcEEE
Confidence 556666655 44555557788999998754 233344331 146777888872 223332222 45777
Q ss_pred EEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcC
Q 006979 226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE 305 (623)
Q Consensus 226 idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (623)
.|+...+.. .+.+.....-+.+..|++||+++|=-. +...+++.|..... ....+.+.. ..+-.
T Consensus 285 ~dvR~~~~~-~~~~~~H~qeVCgLkws~d~~~lASGg--------nDN~~~Iwd~~~~~---p~~~~~~H~----aAVKA 348 (484)
T KOG0305|consen 285 HDVRISQHV-VSTLQGHRQEVCGLKWSPDGNQLASGG--------NDNVVFIWDGLSPE---PKFTFTEHT----AAVKA 348 (484)
T ss_pred EEEecchhh-hhhhhcccceeeeeEECCCCCeeccCC--------CccceEeccCCCcc---ccEEEeccc----eeeeE
Confidence 777665311 122333334466789999999887332 23457777774442 344445544 45667
Q ss_pred ceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccc
Q 006979 306 PKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF 354 (623)
Q Consensus 306 ~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~ 354 (623)
.+|+|=-+ |+..... .....|..+|..+++...-......+....|+.
T Consensus 349 ~awcP~q~~lLAsGGG-s~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk 397 (484)
T KOG0305|consen 349 LAWCPWQSGLLATGGG-SADRCIKFWNTNTGARIDSVDTGSQVCSLIWSK 397 (484)
T ss_pred eeeCCCccCceEEcCC-CcccEEEEEEcCCCcEecccccCCceeeEEEcC
Confidence 88998544 6655433 344567777777776544444445566666764
No 255
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.11 Score=54.75 Aligned_cols=210 Identities=10% Similarity=0.026 Sum_probs=109.2
Q ss_pred eeeCCCCCEEEEEEeccC--CCCCCceeEEEEEEcCCCCcccceeccc---C-CCcccceeeCCCCCEEEEEEecCCCCC
Q 006979 196 GIFDPRFNRYVTVREDRR--QDALNSTTEIVAIALNGQNIQEPKVLVS---G-SDFYAFPRMDPRGERMAWIEWHHPNMP 269 (623)
Q Consensus 196 ~~~sPdG~~l~~v~~~~~--~~~~~~~~~L~~idl~~g~~~~~~~l~~---~-~~~~~~p~wSPDG~~la~~~~~~~~~p 269 (623)
..|||..++|+-..-... .+.......|.+.|+.+|. ...-.. + .-.....+||-|+|++|-+..
T Consensus 255 idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~---lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~------ 325 (698)
T KOG2314|consen 255 IDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGL---LKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG------ 325 (698)
T ss_pred eecCCccceEEEecCCccccCcccCCCceEEEEEccccc---hhcceeccCCCccccceEEeccCCceeEEecc------
Confidence 448999998876543221 1112234789999999997 322211 1 111223579999999887753
Q ss_pred CCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCC-eeeEEEEecCCC-eEEEEeecccc
Q 006979 270 WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNG-FWNLHKWIESNN-EVLAIYSLDAE 346 (623)
Q Consensus 270 ~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g-~~~L~~~d~~~~-~~~~l~~~~~~ 346 (623)
..|.+++...- .++.... -....+.++.|+|-+. |+|-+...+. -.++-.+..-++ +.+...-.+..
T Consensus 326 ---~sisIyEtpsf------~lld~Ks-lki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVs 395 (698)
T KOG2314|consen 326 ---NSISIYETPSF------MLLDKKS-LKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVS 395 (698)
T ss_pred ---ceEEEEecCce------eeecccc-cCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeee
Confidence 23666654322 1122111 1114567899999998 6555443122 123333333232 23322212222
Q ss_pred cccccccccCcceeEEeecCCCCEEEEEEEECC-------eE--EEEEEeCCCCceeecccCCcceEe-eeecCCEEEEE
Q 006979 347 FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG-------RS--YLGILDDFGHSLSLLDIPFTDIDN-ITLGNDCLFVE 416 (623)
Q Consensus 347 ~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g-------~~--~L~~~d~~~~~~~~lt~~~~~v~~-~~~~~~~~~~~ 416 (623)
.....|.. .|+.|.+-.++.. .+ .|++++-..--+..+......+.- ..+.|+++.++
T Consensus 396 DckLhWQk------------~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi 463 (698)
T KOG2314|consen 396 DCKLHWQK------------SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVI 463 (698)
T ss_pred ccEEEecc------------CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEE
Confidence 23346664 6677776665432 22 355554332222333332222221 26788888777
Q ss_pred Ee-cCCCCCeEEEEEcCCCcc
Q 006979 417 GA-SGVEPSSVAKVTLDDHKL 436 (623)
Q Consensus 417 ~~-s~~~~~~ly~~~l~~~~~ 436 (623)
.. ......+.|.+....+++
T Consensus 464 ~g~~~k~tvsfY~~e~~~~~~ 484 (698)
T KOG2314|consen 464 SGNTVKNTVSFYAVETNIKKP 484 (698)
T ss_pred EccccccceeEEEeecCCCch
Confidence 64 555566788887655554
No 256
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=97.07 E-value=0.0016 Score=70.07 Aligned_cols=111 Identities=15% Similarity=0.084 Sum_probs=66.1
Q ss_pred CCEEEEecCCCCCcccC-cCCHHhHHHH-cCceEEEEECCCCCCCCchhH--HHhhccCC----ccchHHHHHHHHHHHH
Q 006979 495 PPLLVKSHGGPTSEARG-ILNLSIQYWT-SRGWAFVDVNYGGSTGYGREF--RERLLGRW----GIVDVNDCCSCATFLV 566 (623)
Q Consensus 495 ~Pliv~~hGg~~~~~~~-~~~~~~~~~a-~~G~~v~~~d~rGs~~~g~~~--~~~~~~~~----g~~~~~D~~~~~~~l~ 566 (623)
-|++|++ ||-+..... ........+| +.|-.++.+.+|- ||++. .+....+. -.+.++|+..-++++.
T Consensus 29 gpifl~~-ggE~~~~~~~~~~~~~~~lA~~~~a~~v~lEHRy---YG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~ 104 (434)
T PF05577_consen 29 GPIFLYI-GGEGPIEPFWINNGFMWELAKEFGALVVALEHRY---YGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVK 104 (434)
T ss_dssp SEEEEEE---SS-HHHHHHH-HHHHHHHHHHTEEEEEE--TT---STTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHH
T ss_pred CCEEEEE-CCCCccchhhhcCChHHHHHHHcCCcEEEeehhh---hcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHH
Confidence 6888888 442222111 1112333444 4699999999997 44443 11112222 2355789999999988
Q ss_pred hCC-CCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979 567 GSG-KADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI 609 (623)
Q Consensus 567 ~~~-~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d 609 (623)
++- ..+..++.++|+||||.++.++- .+|++|.++++.++++.
T Consensus 105 ~~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 105 KKYNTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp HHTTTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CC
T ss_pred HhhcCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceee
Confidence 643 34556999999999999999988 89999999998888754
No 257
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=97.04 E-value=0.068 Score=55.02 Aligned_cols=226 Identities=12% Similarity=0.035 Sum_probs=123.5
Q ss_pred CCceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEE
Q 006979 146 GGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (623)
Q Consensus 146 g~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~ 224 (623)
+..+.+|+.+ .++.....+|.+..++.+++ ....|... ........|+-+|++|+-...| ..+.
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~--l~~tl~~H----kgPI~slKWnk~G~yilS~~vD---------~tti 301 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGN--LISTLGQH----KGPIFSLKWNKKGTYILSGGVD---------GTTI 301 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCch--hhhhhhcc----CCceEEEEEcCCCCEEEeccCC---------ccEE
Confidence 3566777755 56666667888888887754 44444443 2334567899999999875443 4577
Q ss_pred EEEcCCCCcccceecccCCCcc-cceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccC
Q 006979 225 AIALNGQNIQEPKVLVSGSDFY-AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP 303 (623)
Q Consensus 225 ~idl~~g~~~~~~~l~~~~~~~-~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 303 (623)
++|.-+|+ ..+...-.... -...|=-+.+ |+... ....|+++-++... +...+.+.. ..+
T Consensus 302 lwd~~~g~---~~q~f~~~s~~~lDVdW~~~~~---F~ts~------td~~i~V~kv~~~~---P~~t~~GH~----g~V 362 (524)
T KOG0273|consen 302 LWDAHTGT---VKQQFEFHSAPALDVDWQSNDE---FATSS------TDGCIHVCKVGEDR---PVKTFIGHH----GEV 362 (524)
T ss_pred EEeccCce---EEEeeeeccCCccceEEecCce---EeecC------CCceEEEEEecCCC---cceeeeccc----Cce
Confidence 88988887 44433221111 1234544433 23212 23458888887764 344555655 678
Q ss_pred cCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEE
Q 006979 304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL 383 (623)
Q Consensus 304 ~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L 383 (623)
....|.|.|+|+..+.. ++.-.||...- ++....+.....++-...|++.... . ..|..+..+.+..-++...+
T Consensus 363 ~alk~n~tg~LLaS~Sd-D~TlkiWs~~~-~~~~~~l~~Hskei~t~~wsp~g~v-~---~n~~~~~~l~sas~dstV~l 436 (524)
T KOG0273|consen 363 NALKWNPTGSLLASCSD-DGTLKIWSMGQ-SNSVHDLQAHSKEIYTIKWSPTGPV-T---SNPNMNLMLASASFDSTVKL 436 (524)
T ss_pred EEEEECCCCceEEEecC-CCeeEeeecCC-CcchhhhhhhccceeeEeecCCCCc-c---CCCcCCceEEEeecCCeEEE
Confidence 89999999986655544 57777875421 1112222222222222234331100 0 00133344444445565555
Q ss_pred EEEeCCCCc-eeecccCCcceEee--eecCCEE
Q 006979 384 GILDDFGHS-LSLLDIPFTDIDNI--TLGNDCL 413 (623)
Q Consensus 384 ~~~d~~~~~-~~~lt~~~~~v~~~--~~~~~~~ 413 (623)
| |...+. +..+......|..+ ++++.++
T Consensus 437 w--dv~~gv~i~~f~kH~~pVysvafS~~g~yl 467 (524)
T KOG0273|consen 437 W--DVESGVPIHTLMKHQEPVYSVAFSPNGRYL 467 (524)
T ss_pred E--EccCCceeEeeccCCCceEEEEecCCCcEE
Confidence 5 555554 44566666667776 5555544
No 258
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=97.04 E-value=0.0063 Score=61.33 Aligned_cols=140 Identities=14% Similarity=0.097 Sum_probs=87.5
Q ss_pred EEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 006979 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP 236 (623)
Q Consensus 157 l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~ 236 (623)
.+++.-.++.|..+|..++ ..+.-.+. ..+......+++|..|+....+ ..|-++|+.+.+ +
T Consensus 314 ~~~SgH~DkkvRfwD~Rs~--~~~~sv~~----gg~vtSl~ls~~g~~lLsssRD---------dtl~viDlRt~e---I 375 (459)
T KOG0288|consen 314 DVISGHFDKKVRFWDIRSA--DKTRSVPL----GGRVTSLDLSMDGLELLSSSRD---------DTLKVIDLRTKE---I 375 (459)
T ss_pred eeeecccccceEEEeccCC--ceeeEeec----CcceeeEeeccCCeEEeeecCC---------Cceeeeeccccc---E
Confidence 3444445666888887765 33333332 4578888999999988776433 458889998877 5
Q ss_pred eecccCCCc-----ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCC
Q 006979 237 KVLVSGSDF-----YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 311 (623)
Q Consensus 237 ~~l~~~~~~-----~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~D 311 (623)
++......| .+...|||||+|++--+.|. .||+.++.++.. +........+ ..+....|+|-
T Consensus 376 ~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dg--------sv~iW~v~tgKl-E~~l~~s~s~----~aI~s~~W~~s 442 (459)
T KOG0288|consen 376 RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADG--------SVYIWSVFTGKL-EKVLSLSTSN----AAITSLSWNPS 442 (459)
T ss_pred EEEeeccccccccccceeEECCCCceeeeccCCC--------cEEEEEccCceE-EEEeccCCCC----cceEEEEEcCC
Confidence 555443322 34467999999988655443 499999987732 1222222222 35678899999
Q ss_pred CcEEEEEeCCCCeeeEE
Q 006979 312 GELFFVTDRKNGFWNLH 328 (623)
Q Consensus 312 G~l~~~~~~~~g~~~L~ 328 (623)
|+-+..++. +....||
T Consensus 443 G~~Llsadk-~~~v~lW 458 (459)
T KOG0288|consen 443 GSGLLSADK-QKAVTLW 458 (459)
T ss_pred CchhhcccC-CcceEec
Confidence 983333444 4444444
No 259
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.04 E-value=0.15 Score=53.16 Aligned_cols=149 Identities=10% Similarity=0.022 Sum_probs=84.3
Q ss_pred EEEEeCCCCcEEEEeCCCCC---CCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 006979 157 VIFSNYKDQRLYKHSIDSKD---SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (623)
Q Consensus 157 l~f~~~~~~~l~~~d~~~g~---~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~ 233 (623)
-+++...|-.+..+|+.+-+ ..-++|.+.. ....+..+|||.|..|+++... .+.-++|.++-+
T Consensus 181 R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E---~h~i~sl~ys~Tg~~iLvvsg~---------aqakl~DRdG~~- 247 (641)
T KOG0772|consen 181 RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCE---THQINSLQYSVTGDQILVVSGS---------AQAKLLDRDGFE- 247 (641)
T ss_pred eeeeccccceEEEEecccccccchhhhccCccc---ccccceeeecCCCCeEEEEecC---------cceeEEccCCce-
Confidence 44455556668888887531 1245665541 3456778999999999998753 345666776654
Q ss_pred ccceecccCC----------Ccc---cceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCC-Cc
Q 006979 234 QEPKVLVSGS----------DFY---AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP-TI 299 (623)
Q Consensus 234 ~~~~~l~~~~----------~~~---~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~-~~ 299 (623)
......|. +.. ..-+|.|+.+..+....++. .|.+.+++.... ...++..... ..
T Consensus 248 --~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dg-------tlRiWdv~~~k~--q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 248 --IVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDG-------TLRIWDVNNTKS--QLQVIKTKPAGGK 316 (641)
T ss_pred --eeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCC-------cEEEEecCCchh--heeEEeeccCCCc
Confidence 22222221 111 22469999998876654432 255556554321 2333322110 11
Q ss_pred cccCcCceeCCCCcEEEEEeCCCCeeeEEEE
Q 006979 300 VESPTEPKWSSKGELFFVTDRKNGFWNLHKW 330 (623)
Q Consensus 300 ~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~ 330 (623)
...+..-.|++||+++...-. +|.-++|.+
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~-DGSIQ~W~~ 346 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCL-DGSIQIWDK 346 (641)
T ss_pred ccCceeeecCCCcchhhhccc-CCceeeeec
Confidence 145567789999995433333 577777754
No 260
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=96.92 E-value=0.047 Score=61.60 Aligned_cols=106 Identities=19% Similarity=0.156 Sum_probs=66.6
Q ss_pred eeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCC
Q 006979 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW 270 (623)
Q Consensus 191 ~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~ 270 (623)
..+.|..||||+.+++-+.-| +.+.+++..+.+. .+++-.....+-+..|.|-||++|-.+.|+.
T Consensus 130 ~DV~Dv~Wsp~~~~lvS~s~D---------nsViiwn~~tF~~--~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrt---- 194 (942)
T KOG0973|consen 130 SDVLDVNWSPDDSLLVSVSLD---------NSVIIWNAKTFEL--LKVLRGHQSLVKGVSWDPIGKYFASQSDDRT---- 194 (942)
T ss_pred CccceeccCCCccEEEEeccc---------ceEEEEcccccee--eeeeecccccccceEECCccCeeeeecCCce----
Confidence 346789999999888776554 5678888777542 4555555567778899999999997775442
Q ss_pred CceEEEEEEecCCCceeeeEEEcCCCC-CccccCcCceeCCCCcEEEE
Q 006979 271 DKAELWVGYISENGDVYKRVCVAGFDP-TIVESPTEPKWSSKGELFFV 317 (623)
Q Consensus 271 ~~~~L~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ws~DG~l~~~ 317 (623)
|-+.+...-+. ++.+....+. .......++.|||||+++..
T Consensus 195 ----ikvwrt~dw~i--~k~It~pf~~~~~~T~f~RlSWSPDG~~las 236 (942)
T KOG0973|consen 195 ----LKVWRTSDWGI--EKSITKPFEESPLTTFFLRLSWSPDGHHLAS 236 (942)
T ss_pred ----EEEEEccccee--eEeeccchhhCCCcceeeecccCCCcCeecc
Confidence 44555433221 2222221110 00135678999999984433
No 261
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=96.91 E-value=0.092 Score=50.20 Aligned_cols=174 Identities=14% Similarity=0.120 Sum_probs=93.9
Q ss_pred ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceec--ccCCCcccceeeCCCCCEEEEEEecCCCCCC
Q 006979 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL--VSGSDFYAFPRMDPRGERMAWIEWHHPNMPW 270 (623)
Q Consensus 193 ~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l--~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~ 270 (623)
+-+..|+|...-++++.... ..+.++|...++ ...- ..+..+ ...|||||+++++...++
T Consensus 67 vdql~w~~~~~d~~atas~d--------k~ir~wd~r~~k---~~~~i~~~~eni--~i~wsp~g~~~~~~~kdD----- 128 (313)
T KOG1407|consen 67 VDQLCWDPKHPDLFATASGD--------KTIRIWDIRSGK---CTARIETKGENI--NITWSPDGEYIAVGNKDD----- 128 (313)
T ss_pred hhhheeCCCCCcceEEecCC--------ceEEEEEeccCc---EEEEeeccCcce--EEEEcCCCCEEEEecCcc-----
Confidence 44677887665555554322 457788888776 3332 233333 358999999999885332
Q ss_pred CceEEEEEEecCCCceeeeEEEc-CCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeeccccccc
Q 006979 271 DKAELWVGYISENGDVYKRVCVA-GFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSR 349 (623)
Q Consensus 271 ~~~~L~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~ 349 (623)
.|-.+|.... +.+.. ... .......|.-++.++|+.+- .|.-+|..+. .++++..-......
T Consensus 129 ---~it~id~r~~-----~~~~~~~~~----~e~ne~~w~~~nd~Fflt~G-lG~v~ILsyp----sLkpv~si~AH~sn 191 (313)
T KOG1407|consen 129 ---RITFIDARTY-----KIVNEEQFK----FEVNEISWNNSNDLFFLTNG-LGCVEILSYP----SLKPVQSIKAHPSN 191 (313)
T ss_pred ---cEEEEEeccc-----ceeehhccc----ceeeeeeecCCCCEEEEecC-CceEEEEecc----ccccccccccCCcc
Confidence 3666676543 11111 111 34567889877778888876 6777887774 33333321111000
Q ss_pred ccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCC-CceeecccCCcceEee--eecCCEE
Q 006979 350 PLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG-HSLSLLDIPFTDIDNI--TLGNDCL 413 (623)
Q Consensus 350 ~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~-~~~~~lt~~~~~v~~~--~~~~~~~ 413 (623)
- --..| +|+|+++..-+ .+....|| |++. --++.++.-+|.+..+ +.++..+
T Consensus 192 C------icI~f---~p~GryfA~Gs-ADAlvSLW--D~~ELiC~R~isRldwpVRTlSFS~dg~~l 246 (313)
T KOG1407|consen 192 C------ICIEF---DPDGRYFATGS-ADALVSLW--DVDELICERCISRLDWPVRTLSFSHDGRML 246 (313)
T ss_pred e------EEEEE---CCCCceEeecc-ccceeecc--ChhHhhhheeeccccCceEEEEeccCccee
Confidence 0 00112 34777766544 33444444 4432 1234566666777766 4444433
No 262
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.88 E-value=0.18 Score=51.52 Aligned_cols=191 Identities=14% Similarity=0.126 Sum_probs=105.6
Q ss_pred EEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 006979 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP 236 (623)
Q Consensus 157 l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~ 236 (623)
.++++..+..|+++..... ..+..+... ...+......|.|.+++....+ ......|..+|.. .
T Consensus 275 ~v~~aSad~~i~vws~~~~-s~~~~~~~h----~~~V~~ls~h~tgeYllsAs~d---------~~w~Fsd~~~g~~--l 338 (506)
T KOG0289|consen 275 TVITASADEIIRVWSVPLS-SEPTSSRPH----EEPVTGLSLHPTGEYLLSASND---------GTWAFSDISSGSQ--L 338 (506)
T ss_pred heeecCCcceEEeeccccc-cCccccccc----cccceeeeeccCCcEEEEecCC---------ceEEEEEccCCcE--E
Confidence 3445445556777776543 222222222 2345667889999998886554 3355566666641 2
Q ss_pred eeccc-CCC-cccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-
Q 006979 237 KVLVS-GSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE- 313 (623)
Q Consensus 237 ~~l~~-~~~-~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~- 313 (623)
.++.. ..+ -+....|.||| |.|.... ..+.|-++|+..+. +...+.+.. .-+....|+.+|-
T Consensus 339 t~vs~~~s~v~~ts~~fHpDg--Lifgtgt------~d~~vkiwdlks~~---~~a~Fpght----~~vk~i~FsENGY~ 403 (506)
T KOG0289|consen 339 TVVSDETSDVEYTSAAFHPDG--LIFGTGT------PDGVVKIWDLKSQT---NVAKFPGHT----GPVKAISFSENGYW 403 (506)
T ss_pred EEEeeccccceeEEeeEcCCc--eEEeccC------CCceEEEEEcCCcc---ccccCCCCC----CceeEEEeccCceE
Confidence 22222 122 25567899999 4455422 14568888988773 333455544 5677889999994
Q ss_pred EEEEEeCCCCeeeEEEEecCCCe-EEEEe-ecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCC
Q 006979 314 LFFVTDRKNGFWNLHKWIESNNE-VLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH 391 (623)
Q Consensus 314 l~~~~~~~~g~~~L~~~d~~~~~-~~~l~-~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~ 391 (623)
|+..+++ +. +..+|+..-+ .+.+. ++..++ .++.|-+ .|..+... ...-++|.++..++
T Consensus 404 Lat~add--~~--V~lwDLRKl~n~kt~~l~~~~~v---------~s~~fD~---SGt~L~~~---g~~l~Vy~~~k~~k 464 (506)
T KOG0289|consen 404 LATAADD--GS--VKLWDLRKLKNFKTIQLDEKKEV---------NSLSFDQ---SGTYLGIA---GSDLQVYICKKKTK 464 (506)
T ss_pred EEEEecC--Ce--EEEEEehhhcccceeeccccccc---------eeEEEcC---CCCeEEee---cceeEEEEEecccc
Confidence 3323332 33 5666765433 22222 221122 2333431 44444443 44567888888888
Q ss_pred ceeecc
Q 006979 392 SLSLLD 397 (623)
Q Consensus 392 ~~~~lt 397 (623)
+|+.+.
T Consensus 465 ~W~~~~ 470 (506)
T KOG0289|consen 465 SWTEIK 470 (506)
T ss_pred cceeee
Confidence 887654
No 263
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=96.88 E-value=0.36 Score=48.40 Aligned_cols=152 Identities=11% Similarity=0.112 Sum_probs=96.8
Q ss_pred eCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 006979 153 FGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ 231 (623)
Q Consensus 153 s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g 231 (623)
.++ .++.+...|..-|+++..+| ..+-.|+.. ...+....||-||.+|+-- . ..+.|.+....+|
T Consensus 73 ~P~~~l~aTGGgDD~AflW~~~~g-e~~~eltgH----KDSVt~~~FshdgtlLATG-d--------msG~v~v~~~stg 138 (399)
T KOG0296|consen 73 HPNNNLVATGGGDDLAFLWDISTG-EFAGELTGH----KDSVTCCSFSHDGTLLATG-D--------MSGKVLVFKVSTG 138 (399)
T ss_pred CCCCceEEecCCCceEEEEEccCC-cceeEecCC----CCceEEEEEccCceEEEec-C--------CCccEEEEEcccC
Confidence 344 67777767777788888877 345566654 3456667799999876542 1 1256778888777
Q ss_pred CcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCC
Q 006979 232 NIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 311 (623)
Q Consensus 232 ~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~D 311 (623)
.. ...+....+-..-..|.|-+..|++-.. ...||++.+..++ ..+++.|.. ....--.+.||
T Consensus 139 ~~--~~~~~~e~~dieWl~WHp~a~illAG~~--------DGsvWmw~ip~~~---~~kv~~Gh~----~~ct~G~f~pd 201 (399)
T KOG0296|consen 139 GE--QWKLDQEVEDIEWLKWHPRAHILLAGST--------DGSVWMWQIPSQA---LCKVMSGHN----SPCTCGEFIPD 201 (399)
T ss_pred ce--EEEeecccCceEEEEecccccEEEeecC--------CCcEEEEECCCcc---eeeEecCCC----CCcccccccCC
Confidence 62 2334422222334679998876655442 2349999988752 566777765 45556678999
Q ss_pred CcEEEEEeCCCCeeeEEEEecCCCeEE
Q 006979 312 GELFFVTDRKNGFWNLHKWIESNNEVL 338 (623)
Q Consensus 312 G~l~~~~~~~~g~~~L~~~d~~~~~~~ 338 (623)
|+.++.... +| .|..+|+.++...
T Consensus 202 GKr~~tgy~-dg--ti~~Wn~ktg~p~ 225 (399)
T KOG0296|consen 202 GKRILTGYD-DG--TIIVWNPKTGQPL 225 (399)
T ss_pred CceEEEEec-Cc--eEEEEecCCCcee
Confidence 995544443 34 4566788888643
No 264
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.061 Score=57.14 Aligned_cols=225 Identities=10% Similarity=0.009 Sum_probs=126.7
Q ss_pred EEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 006979 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP 236 (623)
Q Consensus 157 l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~ 236 (623)
++.+. ....+|+++..++ ...+|.... ...+....|+++|++|+.-..+ ..+.++|....+. +
T Consensus 190 ~laVa-lg~~vylW~~~s~--~v~~l~~~~---~~~vtSv~ws~~G~~LavG~~~---------g~v~iwD~~~~k~--~ 252 (484)
T KOG0305|consen 190 VLAVA-LGQSVYLWSASSG--SVTELCSFG---EELVTSVKWSPDGSHLAVGTSD---------GTVQIWDVKEQKK--T 252 (484)
T ss_pred eEEEE-ecceEEEEecCCC--ceEEeEecC---CCceEEEEECCCCCEEEEeecC---------CeEEEEehhhccc--c
Confidence 44443 3345999998887 667777641 3456778899999999887654 5688888876431 3
Q ss_pred eeccc-CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEE
Q 006979 237 KVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF 315 (623)
Q Consensus 237 ~~l~~-~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~ 315 (623)
+.+.. ....+...+|. +.-+ ..... ...|...|+...... ...+.+.. ..+....|++|++.+
T Consensus 253 ~~~~~~h~~rvg~laW~--~~~l--ssGsr------~~~I~~~dvR~~~~~--~~~~~~H~----qeVCgLkws~d~~~l 316 (484)
T KOG0305|consen 253 RTLRGSHASRVGSLAWN--SSVL--SSGSR------DGKILNHDVRISQHV--VSTLQGHR----QEVCGLKWSPDGNQL 316 (484)
T ss_pred ccccCCcCceeEEEecc--CceE--EEecC------CCcEEEEEEecchhh--hhhhhccc----ceeeeeEECCCCCee
Confidence 44444 33345556787 2222 22122 223666666654321 11234444 567889999999633
Q ss_pred EEEeCCCCeeeEEEEecCCCe-EEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCcee
Q 006979 316 FVTDRKNGFWNLHKWIESNNE-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 394 (623)
Q Consensus 316 ~~~~~~~g~~~L~~~d~~~~~-~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~ 394 (623)
.+.. ....++.+|....+ ...++.....+....|.+-. ..|+.+........|...|..+|+..
T Consensus 317 -ASGg--nDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q------------~~lLAsGGGs~D~~i~fwn~~~g~~i 381 (484)
T KOG0305|consen 317 -ASGG--NDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQ------------SGLLATGGGSADRCIKFWNTNTGARI 381 (484)
T ss_pred -ccCC--CccceEeccCCCccccEEEeccceeeeEeeeCCCc------------cCceEEcCCCcccEEEEEEcCCCcEe
Confidence 3322 12345556653332 44555566666667777632 23444433333456666777666554
Q ss_pred ecccCCcceEee--eecCCEEEEEEecCCCCCeEEEE
Q 006979 395 LLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKV 429 (623)
Q Consensus 395 ~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~ 429 (623)
.--.....|..+ +...+.++.........-.||.+
T Consensus 382 ~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ 418 (484)
T KOG0305|consen 382 DSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKY 418 (484)
T ss_pred cccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEec
Confidence 322223456666 66677777666544444455555
No 265
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.86 E-value=0.16 Score=49.66 Aligned_cols=177 Identities=16% Similarity=0.167 Sum_probs=83.4
Q ss_pred ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc-cCCCcccceeeCCCCCEEEEEEecCCCCCCC
Q 006979 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 271 (623)
Q Consensus 193 ~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~-~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~ 271 (623)
....+|+||.+.|++|.... ..|+.+++++.- ++.+. .+.+-+-+.++.-+|++ +..+ .+
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~--------~~i~els~~G~v---lr~i~l~g~~D~EgI~y~g~~~~-vl~~-Er------ 84 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEP--------GEIYELSLDGKV---LRRIPLDGFGDYEGITYLGNGRY-VLSE-ER------ 84 (248)
T ss_dssp EEEEEEETTTTEEEEEETTT--------TEEEEEETT--E---EEEEE-SS-SSEEEEEE-STTEE-EEEE-TT------
T ss_pred ccccEEcCCCCeEEEEECCC--------CEEEEEcCCCCE---EEEEeCCCCCCceeEEEECCCEE-EEEE-cC------
Confidence 56789999999999987653 569999987543 44442 22222344667777753 3332 32
Q ss_pred ceEEEEEEecCCCc-e--ee-eEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEec--CCCeEEEEeecc
Q 006979 272 KAELWVGYISENGD-V--YK-RVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE--SNNEVLAIYSLD 344 (623)
Q Consensus 272 ~~~L~v~d~~~~~~-~--~~-~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~--~~~~~~~l~~~~ 344 (623)
..+|++++++..+. + .. .....+....-...+-..+|++.++ |+++..+ .-..||.++. ............
T Consensus 85 ~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~--~P~~l~~~~~~~~~~~~~~~~~~~ 162 (248)
T PF06977_consen 85 DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER--KPKRLYEVNGFPGGFDLFVSDDQD 162 (248)
T ss_dssp TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES--SSEEEEEEESTT-SS--EEEE-HH
T ss_pred CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC--CChhhEEEccccCccceeeccccc
Confidence 34688888854422 1 11 1121121100003467899999877 6655444 4556888775 222222222110
Q ss_pred cccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeec
Q 006979 345 AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL 396 (623)
Q Consensus 345 ~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~l 396 (623)
.. .........+.+.+. |..+++++.+.+ ...|..+|.++..+..+
T Consensus 163 ~~-~~~~~~~d~S~l~~~---p~t~~lliLS~e--s~~l~~~d~~G~~~~~~ 208 (248)
T PF06977_consen 163 LD-DDKLFVRDLSGLSYD---PRTGHLLILSDE--SRLLLELDRQGRVVSSL 208 (248)
T ss_dssp HH--HT--SS---EEEEE---TTTTEEEEEETT--TTEEEEE-TT--EEEEE
T ss_pred cc-cccceeccccceEEc---CCCCeEEEEECC--CCeEEEECCCCCEEEEE
Confidence 00 001111122344443 266677777743 34567778665544433
No 266
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=96.83 E-value=0.27 Score=50.82 Aligned_cols=205 Identities=7% Similarity=-0.028 Sum_probs=98.5
Q ss_pred CceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCCCCcEEEEe
Q 006979 92 GGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHS 171 (623)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~~~~l~~~d 171 (623)
-.++|+ +..-|-+...- +++..||-...+ +..+.++. |+..+....|.++.-+.....++.|+++.
T Consensus 280 ~slKWn-k~G~yilS~~v--D~ttilwd~~~g---~~~q~f~~--------~s~~~lDVdW~~~~~F~ts~td~~i~V~k 345 (524)
T KOG0273|consen 280 FSLKWN-KKGTYILSGGV--DGTTILWDAHTG---TVKQQFEF--------HSAPALDVDWQSNDEFATSSTDGCIHVCK 345 (524)
T ss_pred EEEEEc-CCCCEEEeccC--CccEEEEeccCc---eEEEeeee--------ccCCccceEEecCceEeecCCCceEEEEE
Confidence 466776 44444443222 366666643322 33333321 22223344554442233334567788877
Q ss_pred CCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceee
Q 006979 172 IDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRM 251 (623)
Q Consensus 172 ~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~w 251 (623)
++.. .....+... ...++...|.|.|..|+-.+.|.. -.||.+.-++ . ...|.....-.....|
T Consensus 346 v~~~-~P~~t~~GH----~g~V~alk~n~tg~LLaS~SdD~T-------lkiWs~~~~~-~---~~~l~~Hskei~t~~w 409 (524)
T KOG0273|consen 346 VGED-RPVKTFIGH----HGEVNALKWNPTGSLLASCSDDGT-------LKIWSMGQSN-S---VHDLQAHSKEIYTIKW 409 (524)
T ss_pred ecCC-Ccceeeecc----cCceEEEEECCCCceEEEecCCCe-------eEeeecCCCc-c---hhhhhhhccceeeEee
Confidence 7643 223333332 345677889999986665444421 3455443222 1 2333322222334789
Q ss_pred CCCCCEEEEEEecCCCCCC--CceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEE
Q 006979 252 DPRGERMAWIEWHHPNMPW--DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHK 329 (623)
Q Consensus 252 SPDG~~la~~~~~~~~~p~--~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~ 329 (623)
||+|. +-...+......| ..+.|-++|+..+- ....+.... ..+...+++|||+.+...+. .|.-+||
T Consensus 410 sp~g~-v~~n~~~~~~l~sas~dstV~lwdv~~gv---~i~~f~kH~----~pVysvafS~~g~ylAsGs~-dg~V~iw- 479 (524)
T KOG0273|consen 410 SPTGP-VTSNPNMNLMLASASFDSTVKLWDVESGV---PIHTLMKHQ----EPVYSVAFSPNGRYLASGSL-DGCVHIW- 479 (524)
T ss_pred cCCCC-ccCCCcCCceEEEeecCCeEEEEEccCCc---eeEeeccCC----CceEEEEecCCCcEEEecCC-CCeeEec-
Confidence 99986 2111111000000 12335666776652 222233333 46778999999984444444 4554544
Q ss_pred EecCCCeE
Q 006979 330 WIESNNEV 337 (623)
Q Consensus 330 ~d~~~~~~ 337 (623)
+..+++.
T Consensus 480 -s~~~~~l 486 (524)
T KOG0273|consen 480 -STKTGKL 486 (524)
T ss_pred -cccchhe
Confidence 4445543
No 267
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.83 E-value=0.89 Score=48.24 Aligned_cols=228 Identities=10% Similarity=0.050 Sum_probs=110.2
Q ss_pred EEEeCCEEEEEeCCCCcEEEEeCCCCCCCce-ecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 006979 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (623)
Q Consensus 150 ~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~-~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl 228 (623)
....++.|++.. .++.||.+|.++| +.. +.... ......|... ++ .+++... .+.|+.+|+
T Consensus 116 ~~v~~~~v~v~~-~~g~l~ald~~tG--~~~W~~~~~----~~~~ssP~v~-~~-~v~v~~~---------~g~l~ald~ 177 (394)
T PRK11138 116 VTVAGGKVYIGS-EKGQVYALNAEDG--EVAWQTKVA----GEALSRPVVS-DG-LVLVHTS---------NGMLQALNE 177 (394)
T ss_pred cEEECCEEEEEc-CCCEEEEEECCCC--CCcccccCC----CceecCCEEE-CC-EEEEECC---------CCEEEEEEc
Confidence 344566776653 5677999999887 321 11111 1223344443 33 4443221 157999999
Q ss_pred CCCCcccceecccCCC----cccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEc-CCCC-Cc---
Q 006979 229 NGQNIQEPKVLVSGSD----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA-GFDP-TI--- 299 (623)
Q Consensus 229 ~~g~~~~~~~l~~~~~----~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~-~~~~-~~--- 299 (623)
++|+........ ... ....|... + ..+++.. . ...|+.+|.+++.. .+... .... ..
T Consensus 178 ~tG~~~W~~~~~-~~~~~~~~~~sP~v~-~-~~v~~~~-~-------~g~v~a~d~~~G~~---~W~~~~~~~~~~~~~~ 243 (394)
T PRK11138 178 SDGAVKWTVNLD-VPSLTLRGESAPATA-F-GGAIVGG-D-------NGRVSAVLMEQGQL---IWQQRISQPTGATEID 243 (394)
T ss_pred cCCCEeeeecCC-CCcccccCCCCCEEE-C-CEEEEEc-C-------CCEEEEEEccCChh---hheeccccCCCccchh
Confidence 998732111111 111 12345443 2 3354432 2 23578888776632 11111 1000 00
Q ss_pred --cccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEE
Q 006979 300 --VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ 377 (623)
Q Consensus 300 --~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~ 377 (623)
......|.. .|+.+|+.... | .|+.+|+.+|+.. ...+ +..+ ..... .++.+|+...
T Consensus 244 ~~~~~~~sP~v-~~~~vy~~~~~--g--~l~ald~~tG~~~--W~~~--~~~~------~~~~~-----~~~~vy~~~~- 302 (394)
T PRK11138 244 RLVDVDTTPVV-VGGVVYALAYN--G--NLVALDLRSGQIV--WKRE--YGSV------NDFAV-----DGGRIYLVDQ- 302 (394)
T ss_pred cccccCCCcEE-ECCEEEEEEcC--C--eEEEEECCCCCEE--Eeec--CCCc------cCcEE-----ECCEEEEEcC-
Confidence 001123333 24545554432 3 6889999888632 1111 1111 01111 5677777653
Q ss_pred CCeEEEEEEeCCCCceee-cc-cCCcceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979 378 NGRSYLGILDDFGHSLSL-LD-IPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (623)
Q Consensus 378 ~g~~~L~~~d~~~~~~~~-lt-~~~~~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~ 436 (623)
..+|+.+|..+|+..- .. ............++++|+... ...|+.++.++|+.
T Consensus 303 --~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~----~G~l~~ld~~tG~~ 357 (394)
T PRK11138 303 --NDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDS----EGYLHWINREDGRF 357 (394)
T ss_pred --CCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeC----CCEEEEEECCCCCE
Confidence 2468899998886431 11 111112222234677765432 25799999988874
No 268
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.82 E-value=0.43 Score=46.36 Aligned_cols=184 Identities=14% Similarity=0.103 Sum_probs=90.6
Q ss_pred eEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEE-EcCC-CCC
Q 006979 221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC-VAGF-DPT 298 (623)
Q Consensus 221 ~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~-~~~~-~~~ 298 (623)
..|+.+|..+|+......+ ...+...| ..++..|++... ...|+.+|..++. ..+. .... +..
T Consensus 46 ~~l~~~d~~tG~~~W~~~~--~~~~~~~~--~~~~~~v~v~~~--------~~~l~~~d~~tG~---~~W~~~~~~~~~~ 110 (238)
T PF13360_consen 46 GNLYALDAKTGKVLWRFDL--PGPISGAP--VVDGGRVYVGTS--------DGSLYALDAKTGK---VLWSIYLTSSPPA 110 (238)
T ss_dssp SEEEEEETTTSEEEEEEEC--SSCGGSGE--EEETTEEEEEET--------TSEEEEEETTTSC---EEEEEEE-SSCTC
T ss_pred CEEEEEECCCCCEEEEeec--ccccccee--eecccccccccc--------eeeeEecccCCcc---eeeeecccccccc
Confidence 6799999988873222222 23333334 335566766652 2269999977764 2222 1211 101
Q ss_pred ccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccc-ccc-CcceeEEeecCCCCEEEEEEE
Q 006979 299 IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLW-VFG-INSYEIIQSHGEKNLIACSYR 376 (623)
Q Consensus 299 ~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w-~~~-~~~~~~l~~s~~~~~l~~~~~ 376 (623)
..........++..+++... ...|+.+|+.+|+..--.+.......... ... ...-..+ .++.+++..
T Consensus 111 --~~~~~~~~~~~~~~~~~~~~---~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~- 180 (238)
T PF13360_consen 111 --GVRSSSSPAVDGDRLYVGTS---SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI----SDGRVYVSS- 180 (238)
T ss_dssp --STB--SEEEEETTEEEEEET---CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC----CTTEEEEEC-
T ss_pred --ccccccCceEecCEEEEEec---cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE----ECCEEEEEc-
Confidence 11122233334553444432 24689999999875322221110000000 000 0011122 334555544
Q ss_pred ECCeEEEEEEeCCCCceeecccCCcceEe-eeecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979 377 QNGRSYLGILDDFGHSLSLLDIPFTDIDN-ITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (623)
Q Consensus 377 ~~g~~~L~~~d~~~~~~~~lt~~~~~v~~-~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~ 436 (623)
.++. ++.+|..+++..- ......... ...+++.+++... ...|+.+|+++|+.
T Consensus 181 ~~g~--~~~~d~~tg~~~w-~~~~~~~~~~~~~~~~~l~~~~~----~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 181 GDGR--VVAVDLATGEKLW-SKPISGIYSLPSVDGGTLYVTSS----DGRLYALDLKTGKV 234 (238)
T ss_dssp CTSS--EEEEETTTTEEEE-EECSS-ECECEECCCTEEEEEET----TTEEEEEETTTTEE
T ss_pred CCCe--EEEEECCCCCEEE-EecCCCccCCceeeCCEEEEEeC----CCEEEEEECCCCCE
Confidence 3443 6666998887432 222223333 3667777777652 37899999999973
No 269
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=96.82 E-value=0.22 Score=55.49 Aligned_cols=146 Identities=14% Similarity=0.102 Sum_probs=86.9
Q ss_pred EeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceec
Q 006979 160 SNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL 239 (623)
Q Consensus 160 ~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l 239 (623)
+...++.+.++..+.+ .....|+.- .....+.+++-+|+++++..+| ..|-+++..+... .+.+
T Consensus 71 ~~s~~~tv~~y~fps~-~~~~iL~Rf----tlp~r~~~v~g~g~~iaagsdD---------~~vK~~~~~D~s~--~~~l 134 (933)
T KOG1274|consen 71 TGSEQNTVLRYKFPSG-EEDTILARF----TLPIRDLAVSGSGKMIAAGSDD---------TAVKLLNLDDSSQ--EKVL 134 (933)
T ss_pred EeeccceEEEeeCCCC-Cccceeeee----eccceEEEEecCCcEEEeecCc---------eeEEEEeccccch--heee
Confidence 3334566777777665 222244432 2334567899999999987665 5577788776541 3344
Q ss_pred ccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCC--Cc--cccCcCceeCCCCc-E
Q 006979 240 VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP--TI--VESPTEPKWSSKGE-L 314 (623)
Q Consensus 240 ~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~ws~DG~-l 314 (623)
-....-+.+..++|.|..||....+. .|++++++++.. ...+.+-.+ +. ......++|+|+|. +
T Consensus 135 rgh~apVl~l~~~p~~~fLAvss~dG--------~v~iw~~~~~~~---~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~l 203 (933)
T KOG1274|consen 135 RGHDAPVLQLSYDPKGNFLAVSSCDG--------KVQIWDLQDGIL---SKTLTGVDKDNEFILSRICTRLAWHPKGGTL 203 (933)
T ss_pred cccCCceeeeeEcCCCCEEEEEecCc--------eEEEEEcccchh---hhhcccCCccccccccceeeeeeecCCCCeE
Confidence 33334566788999999999886443 488889987632 111221111 00 13457899999965 6
Q ss_pred EEEEeCCCCeeeEEEEecCCCe
Q 006979 315 FFVTDRKNGFWNLHKWIESNNE 336 (623)
Q Consensus 315 ~~~~~~~~g~~~L~~~d~~~~~ 336 (623)
++..-+ +. +..|+..+.+
T Consensus 204 a~~~~d--~~--Vkvy~r~~we 221 (933)
T KOG1274|consen 204 AVPPVD--NT--VKVYSRKGWE 221 (933)
T ss_pred EeeccC--Ce--EEEEccCCce
Confidence 665544 32 3444444543
No 270
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=96.81 E-value=0.12 Score=49.34 Aligned_cols=214 Identities=8% Similarity=-0.054 Sum_probs=104.9
Q ss_pred EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (623)
Q Consensus 156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~ 235 (623)
-++++...+..|.++|...+ +...-+.. ..--....|+|+|+++++...+ ..|-.+|..+-+
T Consensus 78 d~~atas~dk~ir~wd~r~~--k~~~~i~~----~~eni~i~wsp~g~~~~~~~kd---------D~it~id~r~~~--- 139 (313)
T KOG1407|consen 78 DLFATASGDKTIRIWDIRSG--KCTARIET----KGENINITWSPDGEYIAVGNKD---------DRITFIDARTYK--- 139 (313)
T ss_pred cceEEecCCceEEEEEeccC--cEEEEeec----cCcceEEEEcCCCCEEEEecCc---------ccEEEEEecccc---
Confidence 35555556666888888766 44333322 1111236799999999887554 457778876654
Q ss_pred ceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEE
Q 006979 236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF 315 (623)
Q Consensus 236 ~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~ 315 (623)
+..-..-.-+.....|+-++. ++|+. +. .+.+-++....-. ...-+...+ ....-+.++|+|+.+
T Consensus 140 ~~~~~~~~~e~ne~~w~~~nd-~Fflt-~G------lG~v~ILsypsLk---pv~si~AH~----snCicI~f~p~Gryf 204 (313)
T KOG1407|consen 140 IVNEEQFKFEVNEISWNNSND-LFFLT-NG------LGCVEILSYPSLK---PVQSIKAHP----SNCICIEFDPDGRYF 204 (313)
T ss_pred eeehhcccceeeeeeecCCCC-EEEEe-cC------CceEEEEeccccc---cccccccCC----cceEEEEECCCCceE
Confidence 211112223455567886655 77776 22 2335555544331 222233333 234457899999833
Q ss_pred EEEeCCCCeeeEEEEecCCC-eEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCC-ce
Q 006979 316 FVTDRKNGFWNLHKWIESNN-EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH-SL 393 (623)
Q Consensus 316 ~~~~~~~g~~~L~~~d~~~~-~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~-~~ 393 (623)
.+... +..-.| +|++.- -.|.++..+..+... .|.. +|+.|. +..++-.-.|. +.++| ++
T Consensus 205 A~GsA-DAlvSL--WD~~ELiC~R~isRldwpVRTl---------SFS~---dg~~lA-SaSEDh~IDIA--~vetGd~~ 266 (313)
T KOG1407|consen 205 ATGSA-DALVSL--WDVDELICERCISRLDWPVRTL---------SFSH---DGRMLA-SASEDHFIDIA--EVETGDRV 266 (313)
T ss_pred eeccc-cceeec--cChhHhhhheeeccccCceEEE---------Eecc---Ccceee-ccCccceEEeE--ecccCCeE
Confidence 33222 223333 343221 134454444444333 3331 655444 33344443333 33333 34
Q ss_pred eecccCCcceEe-eeecCCEEEEEEecC
Q 006979 394 SLLDIPFTDIDN-ITLGNDCLFVEGASG 420 (623)
Q Consensus 394 ~~lt~~~~~v~~-~~~~~~~~~~~~~s~ 420 (623)
.++......+.- ..+....++|...+.
T Consensus 267 ~eI~~~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 267 WEIPCEGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred EEeeccCCceeEEecCCCceeeEEecCC
Confidence 455443222221 145555566655543
No 271
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.81 E-value=0.16 Score=51.28 Aligned_cols=194 Identities=10% Similarity=0.028 Sum_probs=103.1
Q ss_pred eEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCC-Cc-eEEEEEEecCCCceeeeEEEcCCCCC
Q 006979 221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW-DK-AELWVGYISENGDVYKRVCVAGFDPT 298 (623)
Q Consensus 221 ~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~-~~-~~L~v~d~~~~~~~~~~~~~~~~~~~ 298 (623)
.++|++|.++++ ..=.. ...+..+...||||+.+|..+.--+..-+ .. --|-++|..+-.. .....++.....
T Consensus 17 ~rv~viD~d~~k---~lGmi-~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~-~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGK---LLGMI-DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP-TGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTE---EEEEE-EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE-EEEEEETTS-B-
T ss_pred ceEEEEECCCCc---EEEEe-ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcc-cceEecCCcchh
Confidence 689999998876 32222 12355567799999999865521110000 11 1245556555422 223334433101
Q ss_pred -ccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEE
Q 006979 299 -IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ 377 (623)
Q Consensus 299 -~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~ 377 (623)
-..+......+.||+.+++.+. .....+-++|++.++...-.+...+.....+ .++. +.+...
T Consensus 92 ~~~~~~~~~~ls~dgk~~~V~N~-TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~--------------~~~~-F~~lC~ 155 (342)
T PF06433_consen 92 QVVPYKNMFALSADGKFLYVQNF-TPATSVTVVDLAAKKVVGEIDTPGCWLIYPS--------------GNRG-FSMLCG 155 (342)
T ss_dssp -BS--GGGEEE-TTSSEEEEEEE-SSSEEEEEEETTTTEEEEEEEGTSEEEEEEE--------------ETTE-EEEEET
T ss_pred eecccccceEEccCCcEEEEEcc-CCCCeEEEEECCCCceeeeecCCCEEEEEec--------------CCCc-eEEEec
Confidence 0123456688999996666666 6777888999998875443332222111111 2233 335556
Q ss_pred CCeEEEEEEeCCCCceeecccCCc---c--e-Eee-eecCCEEEEEEecCCCCCeEEEEEcCCCcceee
Q 006979 378 NGRSYLGILDDFGHSLSLLDIPFT---D--I-DNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 439 (623)
Q Consensus 378 ~g~~~L~~~d~~~~~~~~lt~~~~---~--v-~~~-~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~l 439 (623)
+|.-.-+.+|.+++..+..+..+. + + .+. +..+++++|+.- ...+|.+++.+.+.+.+
T Consensus 156 DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy----~G~v~~~dlsg~~~~~~ 220 (342)
T PF06433_consen 156 DGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSY----EGNVYSADLSGDSAKFG 220 (342)
T ss_dssp TSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBT----TSEEEEEEETTSSEEEE
T ss_pred CCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEec----CCEEEEEeccCCccccc
Confidence 777777777776665543322111 1 1 111 345677887643 26899999888765443
No 272
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=96.80 E-value=0.074 Score=51.50 Aligned_cols=227 Identities=13% Similarity=0.109 Sum_probs=112.5
Q ss_pred CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccC-CCCCCceeEEEEEEcCCCC-----cccce
Q 006979 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRR-QDALNSTTEIVAIALNGQN-----IQEPK 237 (623)
Q Consensus 164 ~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~-~~~~~~~~~L~~idl~~g~-----~~~~~ 237 (623)
++++.+++++.+ ..+.+......+.+-+.+.+-+|-.++|+.+.-+.. .........||.++-.-+. ++.+.
T Consensus 39 dNqVhll~~d~e--~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~ 116 (370)
T KOG1007|consen 39 DNQVHLLRLDSE--GSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVA 116 (370)
T ss_pred cceeEEEEecCc--cchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhh
Confidence 466877777654 233333221122334556677887777877765432 1111123457777543332 11122
Q ss_pred ecc-cCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCC--CCc-
Q 006979 238 VLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS--KGE- 313 (623)
Q Consensus 238 ~l~-~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~--DG~- 313 (623)
.|. ..-....-..|-|++.+|+-+. ++ .|.+++++.+..+. ..+..............-+|+| ||.
T Consensus 117 ~Ldteavg~i~cvew~Pns~klasm~--dn-------~i~l~~l~ess~~v-aev~ss~s~e~~~~ftsg~WspHHdgnq 186 (370)
T KOG1007|consen 117 SLDTEAVGKINCVEWEPNSDKLASMD--DN-------NIVLWSLDESSKIV-AEVLSSESAEMRHSFTSGAWSPHHDGNQ 186 (370)
T ss_pred cCCHHHhCceeeEEEcCCCCeeEEec--cC-------ceEEEEcccCcchh-eeecccccccccceecccccCCCCccce
Confidence 222 1122345578999999998775 22 27777877663321 1121111111124567789998 676
Q ss_pred EEEEEeCCCCeeeEEEEecCCCeE-EEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCc
Q 006979 314 LFFVTDRKNGFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 392 (623)
Q Consensus 314 l~~~~~~~~g~~~L~~~d~~~~~~-~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~ 392 (623)
+....+. .|..+|..+.+. -.| ++.. +. -.+++.|. |+.+.++++-.++|.-+||-....+--
T Consensus 187 v~tt~d~-----tl~~~D~RT~~~~~sI--~dAH-gq-----~vrdlDfN---pnkq~~lvt~gDdgyvriWD~R~tk~p 250 (370)
T KOG1007|consen 187 VATTSDS-----TLQFWDLRTMKKNNSI--EDAH-GQ-----RVRDLDFN---PNKQHILVTCGDDGYVRIWDTRKTKFP 250 (370)
T ss_pred EEEeCCC-----cEEEEEccchhhhcch--hhhh-cc-----eeeeccCC---CCceEEEEEcCCCccEEEEeccCCCcc
Confidence 4433332 466666554321 111 1110 00 00122222 155667777778888888754433333
Q ss_pred eeecccCCcceEee--eecCCEEEEEEe
Q 006979 393 LSLLDIPFTDIDNI--TLGNDCLFVEGA 418 (623)
Q Consensus 393 ~~~lt~~~~~v~~~--~~~~~~~~~~~~ 418 (623)
++.|.....++..+ .+.-+.+++.++
T Consensus 251 v~el~~HsHWvW~VRfn~~hdqLiLs~~ 278 (370)
T KOG1007|consen 251 VQELPGHSHWVWAVRFNPEHDQLILSGG 278 (370)
T ss_pred ccccCCCceEEEEEEecCccceEEEecC
Confidence 44554444445554 455555555554
No 273
>PLN00181 protein SPA1-RELATED; Provisional
Probab=96.79 E-value=0.37 Score=56.26 Aligned_cols=154 Identities=5% Similarity=-0.068 Sum_probs=83.4
Q ss_pred ceEEEeCC-EEEEEeCCCCcEEEEeCCCCC---CC----ceecCCCCCCCCeeecceeeCCC-CCEEEEEEeccCCCCCC
Q 006979 148 GAFRIFGD-TVIFSNYKDQRLYKHSIDSKD---SS----PLPITPDYGEPLVSYADGIFDPR-FNRYVTVREDRRQDALN 218 (623)
Q Consensus 148 ~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~---~~----~~~Lt~~~~~~~~~~~d~~~sPd-G~~l~~v~~~~~~~~~~ 218 (623)
.+..++++ .++++...++.|.++++.... .. ...+.. ........|+|. +++|+....+
T Consensus 487 ~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-----~~~v~~l~~~~~~~~~las~~~D------- 554 (793)
T PLN00181 487 CAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-----RSKLSGICWNSYIKSQVASSNFE------- 554 (793)
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-----cCceeeEEeccCCCCEEEEEeCC-------
Confidence 34555544 455666678888888875310 00 001111 123456778875 5555544332
Q ss_pred ceeEEEEEEcCCCCcccceecccCCCcccceeeCC-CCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCC
Q 006979 219 STTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP 297 (623)
Q Consensus 219 ~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSP-DG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~ 297 (623)
..|.++|+.+++. ...+....+.+....|+| ||..|+-...| ..|.++|+..+.. ...+.. .
T Consensus 555 --g~v~lWd~~~~~~--~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D--------g~v~iWd~~~~~~---~~~~~~-~- 617 (793)
T PLN00181 555 --GVVQVWDVARSQL--VTEMKEHEKRVWSIDYSSADPTLLASGSDD--------GSVKLWSINQGVS---IGTIKT-K- 617 (793)
T ss_pred --CeEEEEECCCCeE--EEEecCCCCCEEEEEEcCCCCCEEEEEcCC--------CEEEEEECCCCcE---EEEEec-C-
Confidence 5688889887652 333433344566678997 77766644422 3478888876532 112222 1
Q ss_pred CccccCcCceeC-CCCcEEEEEeCCCCeeeEEEEecCCCe
Q 006979 298 TIVESPTEPKWS-SKGELFFVTDRKNGFWNLHKWIESNNE 336 (623)
Q Consensus 298 ~~~~~~~~~~ws-~DG~l~~~~~~~~g~~~L~~~d~~~~~ 336 (623)
..+....|. ++|.+++.... ++ .|+.+|....+
T Consensus 618 ---~~v~~v~~~~~~g~~latgs~-dg--~I~iwD~~~~~ 651 (793)
T PLN00181 618 ---ANICCVQFPSESGRSLAFGSA-DH--KVYYYDLRNPK 651 (793)
T ss_pred ---CCeEEEEEeCCCCCEEEEEeC-CC--eEEEEECCCCC
Confidence 234456774 56775544443 34 46666765543
No 274
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.78 E-value=0.02 Score=62.34 Aligned_cols=143 Identities=16% Similarity=0.137 Sum_probs=83.2
Q ss_pred EEeCCEEEEEeCC-CC--cEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 006979 151 RIFGDTVIFSNYK-DQ--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (623)
Q Consensus 151 ~~s~d~l~f~~~~-~~--~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~id 227 (623)
.+++-..||.... |+ +||..|-. .+.++-.+. -..+.-..|+|+.++++--+.| ..+-++|
T Consensus 500 ~F~P~GyYFatas~D~tArLWs~d~~----~PlRifagh---lsDV~cv~FHPNs~Y~aTGSsD---------~tVRlWD 563 (707)
T KOG0263|consen 500 QFAPRGYYFATASHDQTARLWSTDHN----KPLRIFAGH---LSDVDCVSFHPNSNYVATGSSD---------RTVRLWD 563 (707)
T ss_pred EecCCceEEEecCCCceeeeeecccC----Cchhhhccc---ccccceEEECCcccccccCCCC---------ceEEEEE
Confidence 3345566776432 22 46666542 333333220 1112226699999987765443 3455567
Q ss_pred cCCCCcccceecccC-CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCc
Q 006979 228 LNGQNIQEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 306 (623)
Q Consensus 228 l~~g~~~~~~~l~~~-~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (623)
..+|. ..++..| ...+...++||+|++|+-... ...|.++|+..+.. ...+.+.. ..+...
T Consensus 564 v~~G~---~VRiF~GH~~~V~al~~Sp~Gr~LaSg~e--------d~~I~iWDl~~~~~---v~~l~~Ht----~ti~Sl 625 (707)
T KOG0263|consen 564 VSTGN---SVRIFTGHKGPVTALAFSPCGRYLASGDE--------DGLIKIWDLANGSL---VKQLKGHT----GTIYSL 625 (707)
T ss_pred cCCCc---EEEEecCCCCceEEEEEcCCCceEeeccc--------CCcEEEEEcCCCcc---hhhhhccc----CceeEE
Confidence 77776 4455544 455667889999999985542 23488889987632 22233333 567789
Q ss_pred eeCCCCcEEEEEeCCCCeeeEE
Q 006979 307 KWSSKGELFFVTDRKNGFWNLH 328 (623)
Q Consensus 307 ~ws~DG~l~~~~~~~~g~~~L~ 328 (623)
.|+.||.++..... +..-+||
T Consensus 626 sFS~dg~vLasgg~-DnsV~lW 646 (707)
T KOG0263|consen 626 SFSRDGNVLASGGA-DNSVRLW 646 (707)
T ss_pred EEecCCCEEEecCC-CCeEEEE
Confidence 99999985554433 3444555
No 275
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=96.75 E-value=0.0019 Score=68.65 Aligned_cols=88 Identities=14% Similarity=0.103 Sum_probs=61.8
Q ss_pred CcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHH
Q 006979 511 GILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLA 590 (623)
Q Consensus 511 ~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~ 590 (623)
..|...++.|.+.||.+ ..|.+| +|.+|+... .....++++.+.++.+.++. ..++|.|+||||||.+++.
T Consensus 108 ~~~~~li~~L~~~GY~~-~~dL~g---~gYDwR~~~---~~~~~~~~Lk~lIe~~~~~~--g~~kV~LVGHSMGGlva~~ 178 (440)
T PLN02733 108 YYFHDMIEQLIKWGYKE-GKTLFG---FGYDFRQSN---RLPETMDGLKKKLETVYKAS--GGKKVNIISHSMGGLLVKC 178 (440)
T ss_pred HHHHHHHHHHHHcCCcc-CCCccc---CCCCccccc---cHHHHHHHHHHHHHHHHHHc--CCCCEEEEEECHhHHHHHH
Confidence 45667889999999876 788888 555555321 11223567777777776542 2369999999999999998
Q ss_pred Hh-cCCC----ceeEEEecccC
Q 006979 591 AL-AFRD----TFKAGASLYGV 607 (623)
Q Consensus 591 ~~-~~~~----~f~a~v~~~g~ 607 (623)
.+ .+++ .++..|++++.
T Consensus 179 fl~~~p~~~~k~I~~~I~la~P 200 (440)
T PLN02733 179 FMSLHSDVFEKYVNSWIAIAAP 200 (440)
T ss_pred HHHHCCHhHHhHhccEEEECCC
Confidence 77 6665 35666766654
No 276
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.74 E-value=0.053 Score=54.20 Aligned_cols=160 Identities=10% Similarity=0.020 Sum_probs=93.1
Q ss_pred CceEEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 006979 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (623)
Q Consensus 147 ~~~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i 226 (623)
+.+..+..+++++. ...+||++|+.+- .-...+...+ +.+....+++.++.+.+++|=... ..++++++
T Consensus 90 IL~VrmNr~RLvV~--Lee~IyIydI~~M-klLhTI~t~~-~n~~gl~AlS~n~~n~ylAyp~s~-------t~GdV~l~ 158 (391)
T KOG2110|consen 90 ILAVRMNRKRLVVC--LEESIYIYDIKDM-KLLHTIETTP-PNPKGLCALSPNNANCYLAYPGST-------TSGDVVLF 158 (391)
T ss_pred eEEEEEccceEEEE--EcccEEEEecccc-eeehhhhccC-CCccceEeeccCCCCceEEecCCC-------CCceEEEE
Confidence 44555556666555 2334999999753 1111111110 112234455566666788884221 23789999
Q ss_pred EcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCc
Q 006979 227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 306 (623)
Q Consensus 227 dl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (623)
|+.+-+ .+..+....+..+..+|||||..||-.+ +. ++-|.|+.+..+..+.+ +..+- ....+.+.
T Consensus 159 d~~nl~--~v~~I~aH~~~lAalafs~~G~llATAS-eK------GTVIRVf~v~~G~kl~e---FRRG~--~~~~IySL 224 (391)
T KOG2110|consen 159 DTINLQ--PVNTINAHKGPLAALAFSPDGTLLATAS-EK------GTVIRVFSVPEGQKLYE---FRRGT--YPVSIYSL 224 (391)
T ss_pred Ecccce--eeeEEEecCCceeEEEECCCCCEEEEec-cC------ceEEEEEEcCCccEeee---eeCCc--eeeEEEEE
Confidence 987643 1333443344566788999999998664 32 56688888877632111 11111 11456788
Q ss_pred eeCCCCcEEEEEeCCCCeeeEEEEec
Q 006979 307 KWSSKGELFFVTDRKNGFWNLHKWIE 332 (623)
Q Consensus 307 ~ws~DG~l~~~~~~~~g~~~L~~~d~ 332 (623)
.|++|++++..+.. .+.-++++++.
T Consensus 225 ~Fs~ds~~L~~sS~-TeTVHiFKL~~ 249 (391)
T KOG2110|consen 225 SFSPDSQFLAASSN-TETVHIFKLEK 249 (391)
T ss_pred EECCCCCeEEEecC-CCeEEEEEecc
Confidence 99999995544444 58888888764
No 277
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=96.74 E-value=0.084 Score=59.49 Aligned_cols=103 Identities=15% Similarity=0.160 Sum_probs=64.6
Q ss_pred eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCC
Q 006979 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 271 (623)
Q Consensus 192 ~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~ 271 (623)
++.++..+|+++.++++...-........+.+|+.|... ++.++.+ .....+.|||||+.+++...+.. .
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~-~~~~~~~~spdg~~~~~~~~~~~----~ 83 (620)
T COG1506 14 RVSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT-----VRLLTFG-GGVSELRWSPDGSVLAFVSTDGG----R 83 (620)
T ss_pred cccCcccCCCCceeEEeeccccccccccccceEEEeccc-----ccccccC-CcccccccCCCCCEEEEEeccCC----C
Confidence 466788999999999987642222223446788866433 2233333 33456899999999999983332 2
Q ss_pred ceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEE
Q 006979 272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFF 316 (623)
Q Consensus 272 ~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~ 316 (623)
..++|+++.. + . ..... ..+..+.|+++|+ +.+
T Consensus 84 ~~~l~l~~~~-g-~------~~~~~----~~v~~~~~~~~g~~~~~ 117 (620)
T COG1506 84 VAQLYLVDVG-G-L------ITKTA----FGVSDARWSPDGDRIAF 117 (620)
T ss_pred cceEEEEecC-C-c------eeeee----cccccceeCCCCCeEEE
Confidence 5678998876 3 1 11111 3345778888887 555
No 278
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=96.70 E-value=0.002 Score=66.73 Aligned_cols=128 Identities=18% Similarity=0.174 Sum_probs=83.4
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCC-HHhHHHHc-CceEEEEECCCCCCCCchhHHHhhccCCc
Q 006979 474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-LSIQYWTS-RGWAFVDVNYGGSTGYGREFRERLLGRWG 551 (623)
Q Consensus 474 ~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~-~~~~~~a~-~G~~v~~~d~rGs~~~g~~~~~~~~~~~g 551 (623)
.++.-++.|.. + ..+.-++|+++||+.-...+.++ .....|+. ...+|+.+|||= |-+|-=+......-.|
T Consensus 120 CLYlNVW~P~~-~-----p~n~tVlVWiyGGGF~sGt~SLdvYdGk~la~~envIvVs~NYRv-G~FGFL~l~~~~eaPG 192 (601)
T KOG4389|consen 120 CLYLNVWAPAA-D-----PYNLTVLVWIYGGGFYSGTPSLDVYDGKFLAAVENVIVVSMNYRV-GAFGFLYLPGHPEAPG 192 (601)
T ss_pred ceEEEEeccCC-C-----CCCceEEEEEEcCccccCCcceeeeccceeeeeccEEEEEeeeee-ccceEEecCCCCCCCC
Confidence 47777888842 1 22334899999996544444444 23445555 457888899993 2233322211222334
Q ss_pred cchHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHh-c--CCCceeEEEecccCC
Q 006979 552 IVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAAL-A--FRDTFKAGASLYGVS 608 (623)
Q Consensus 552 ~~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~-~--~~~~f~a~v~~~g~~ 608 (623)
..-.-|..-|++|+.++- --||+||.++|-|+|..-+.+.+ . -..+|+-+|..+|-.
T Consensus 193 NmGl~DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~ 255 (601)
T KOG4389|consen 193 NMGLLDQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSL 255 (601)
T ss_pred ccchHHHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCC
Confidence 444779999999998862 25899999999999988776555 2 234888888888753
No 279
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=96.70 E-value=0.025 Score=63.74 Aligned_cols=114 Identities=11% Similarity=0.032 Sum_probs=65.5
Q ss_pred ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEc--------CCCCc------ccceecccCCCcccceeeCCCCCEE
Q 006979 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL--------NGQNI------QEPKVLVSGSDFYAFPRMDPRGERM 258 (623)
Q Consensus 193 ~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl--------~~g~~------~~~~~l~~~~~~~~~p~wSPDG~~l 258 (623)
.+-.+|||||++|+.-.+|. .-.+|..+. .+|.. .....+.....-+....||||+++|
T Consensus 72 v~CVR~S~dG~~lAsGSDD~-------~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~l 144 (942)
T KOG0973|consen 72 VNCVRFSPDGSYLASGSDDR-------LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLL 144 (942)
T ss_pred eeEEEECCCCCeEeeccCcc-------eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEE
Confidence 45577999999998866642 123344331 00110 0111222222224567899999999
Q ss_pred EEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEE
Q 006979 259 AWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKW 330 (623)
Q Consensus 259 a~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~ 330 (623)
+-.+.|. .+.+++..+.+ ...++.+.. .-+-...|.|=|+ +.-++++ ..-.+|+.
T Consensus 145 vS~s~Dn--------sViiwn~~tF~---~~~vl~~H~----s~VKGvs~DP~Gky~ASqsdD--rtikvwrt 200 (942)
T KOG0973|consen 145 VSVSLDN--------SVIIWNAKTFE---LLKVLRGHQ----SLVKGVSWDPIGKYFASQSDD--RTLKVWRT 200 (942)
T ss_pred EEecccc--------eEEEEccccce---eeeeeeccc----ccccceEECCccCeeeeecCC--ceEEEEEc
Confidence 8777554 36677766552 344555554 5567899999997 4444433 44556653
No 280
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.69 E-value=1.1 Score=47.49 Aligned_cols=230 Identities=11% Similarity=0.059 Sum_probs=107.3
Q ss_pred eEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCCCCcEEEEeCC
Q 006979 94 TAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSID 173 (623)
Q Consensus 94 ~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~~~~l~~~d~~ 173 (623)
+.+. ++++|.... +| .|+.++..+| +..+-.+..-. + ..+-.+.++.+++ ...++.|+.+|.+
T Consensus 116 ~~v~-~~~v~v~~~----~g--~l~ald~~tG-~~~W~~~~~~~----~----~ssP~v~~~~v~v-~~~~g~l~ald~~ 178 (394)
T PRK11138 116 VTVA-GGKVYIGSE----KG--QVYALNAEDG-EVAWQTKVAGE----A----LSRPVVSDGLVLV-HTSNGMLQALNES 178 (394)
T ss_pred cEEE-CCEEEEEcC----CC--EEEEEECCCC-CCcccccCCCc----e----ecCCEEECCEEEE-ECCCCEEEEEEcc
Confidence 3444 667765431 12 3677776554 55554432200 0 1122334555555 4456779999998
Q ss_pred CCCCCce-ecCCCCCCCCe---eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCC------
Q 006979 174 SKDSSPL-PITPDYGEPLV---SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS------ 243 (623)
Q Consensus 174 ~g~~~~~-~Lt~~~~~~~~---~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~------ 243 (623)
+| +.. ..... .+.. ....|... ++ .+++...+ +.++.+|+.+|+......+....
T Consensus 179 tG--~~~W~~~~~--~~~~~~~~~~sP~v~-~~-~v~~~~~~---------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~ 243 (394)
T PRK11138 179 DG--AVKWTVNLD--VPSLTLRGESAPATA-FG-GAIVGGDN---------GRVSAVLMEQGQLIWQQRISQPTGATEID 243 (394)
T ss_pred CC--CEeeeecCC--CCcccccCCCCCEEE-CC-EEEEEcCC---------CEEEEEEccCChhhheeccccCCCccchh
Confidence 87 321 22111 0010 11233333 23 34443221 56899999888632222221110
Q ss_pred ---CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeC
Q 006979 244 ---DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR 320 (623)
Q Consensus 244 ---~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~ 320 (623)
+....|.. .+..|++... ...|+.+|..++. ..+... . .....+.. .++++|+....
T Consensus 244 ~~~~~~~sP~v--~~~~vy~~~~--------~g~l~ald~~tG~---~~W~~~-~-----~~~~~~~~-~~~~vy~~~~~ 303 (394)
T PRK11138 244 RLVDVDTTPVV--VGGVVYALAY--------NGNLVALDLRSGQ---IVWKRE-Y-----GSVNDFAV-DGGRIYLVDQN 303 (394)
T ss_pred cccccCCCcEE--ECCEEEEEEc--------CCeEEEEECCCCC---EEEeec-C-----CCccCcEE-ECCEEEEEcCC
Confidence 11233443 3445665542 2358999988773 222111 1 11122322 24446665433
Q ss_pred CCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCcee
Q 006979 321 KNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 394 (623)
Q Consensus 321 ~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~ 394 (623)
.+|+.+|+.+|+.. ...+. .....+. +..+ .++.+|+.. .+| .|+.+|.++|++.
T Consensus 304 ----g~l~ald~~tG~~~--W~~~~-~~~~~~~----sp~v-----~~g~l~v~~-~~G--~l~~ld~~tG~~~ 358 (394)
T PRK11138 304 ----DRVYALDTRGGVEL--WSQSD-LLHRLLT----APVL-----YNGYLVVGD-SEG--YLHWINREDGRFV 358 (394)
T ss_pred ----CeEEEEECCCCcEE--Ecccc-cCCCccc----CCEE-----ECCEEEEEe-CCC--EEEEEECCCCCEE
Confidence 36889998887532 11100 0000111 1111 345666543 344 5888898888754
No 281
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=96.65 E-value=0.0095 Score=59.35 Aligned_cols=102 Identities=16% Similarity=0.046 Sum_probs=63.0
Q ss_pred CCCCCEEEEecCCCCCcccCcCCHHhHHHHc-CceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCC
Q 006979 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 570 (623)
Q Consensus 492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~-~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~ 570 (623)
.++.|.++++||--++. ..|......++. .|--|+.+|.|-.|.+... ...-+....+|+...++....+..
T Consensus 49 ~~~~Pp~i~lHGl~GS~--~Nw~sv~k~Ls~~l~~~v~~vd~RnHG~Sp~~-----~~h~~~~ma~dv~~Fi~~v~~~~~ 121 (315)
T KOG2382|consen 49 LERAPPAIILHGLLGSK--ENWRSVAKNLSRKLGRDVYAVDVRNHGSSPKI-----TVHNYEAMAEDVKLFIDGVGGSTR 121 (315)
T ss_pred cCCCCceEEecccccCC--CCHHHHHHHhcccccCceEEEecccCCCCccc-----cccCHHHHHHHHHHHHHHcccccc
Confidence 56678888999984443 455556666654 4778999998875443221 111133445666666666654433
Q ss_pred CCCCceEEEEcChHH-HHHHHHh-cCCCceeEEE
Q 006979 571 ADEKRLCITGGSAGG-YTTLAAL-AFRDTFKAGA 602 (623)
Q Consensus 571 ~d~~rv~i~G~S~GG-~~~~~~~-~~~~~f~a~v 602 (623)
. .++.|+|||||| -++++.. +.|+...-+|
T Consensus 122 ~--~~~~l~GHsmGG~~~~m~~t~~~p~~~~rli 153 (315)
T KOG2382|consen 122 L--DPVVLLGHSMGGVKVAMAETLKKPDLIERLI 153 (315)
T ss_pred c--CCceecccCcchHHHHHHHHHhcCcccceeE
Confidence 3 589999999999 4444444 5676544333
No 282
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=96.64 E-value=0.0075 Score=56.08 Aligned_cols=107 Identities=19% Similarity=0.120 Sum_probs=78.4
Q ss_pred CCEEEEecCCCCCcc-cCcCCHHhHHHHcCceEEEEECCCCCC-CCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCC
Q 006979 495 PPLLVKSHGGPTSEA-RGILNLSIQYWTSRGWAFVDVNYGGST-GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 572 (623)
Q Consensus 495 ~Pliv~~hGg~~~~~-~~~~~~~~~~~a~~G~~v~~~d~rGs~-~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d 572 (623)
.-.|||+-|-..+-- .........++-+.+|..+.+-.|.+- |||.... ..+.+|+..+++++...++-
T Consensus 36 ~~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~sl--------k~D~edl~~l~~Hi~~~~fS- 106 (299)
T KOG4840|consen 36 SVKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTFSL--------KDDVEDLKCLLEHIQLCGFS- 106 (299)
T ss_pred EEEEEEEcccCCCccccccHHHHHHHHhhccceeeeeeccccccccccccc--------cccHHHHHHHHHHhhccCcc-
Confidence 345666644322111 122345677888999999999988653 3554322 35789999999999877654
Q ss_pred CCceEEEEcChHHHHHHHHhc---CCCceeEEEecccCCCHH
Q 006979 573 EKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGVSIPV 611 (623)
Q Consensus 573 ~~rv~i~G~S~GG~~~~~~~~---~~~~f~a~v~~~g~~d~~ 611 (623)
..|.++|||-|..-.++.++ .+..+.|+|..+|++|-+
T Consensus 107 -t~vVL~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 107 -TDVVLVGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDRE 147 (299)
T ss_pred -cceEEEecCccchHHHHHHHhccchHHHHHHHHhCccchhh
Confidence 49999999999999888873 477899999999999987
No 283
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.37 Score=50.85 Aligned_cols=197 Identities=13% Similarity=0.118 Sum_probs=113.1
Q ss_pred EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (623)
Q Consensus 156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~ 235 (623)
.++.....++.+.++|..+. .....+..+ ..-....++|+++.++....... .+.+.++|..++..
T Consensus 87 ~vyv~~~~~~~v~vid~~~~-~~~~~~~vG-----~~P~~~~~~~~~~~vYV~n~~~~------~~~vsvid~~t~~~-- 152 (381)
T COG3391 87 KVYVTTGDSNTVSVIDTATN-TVLGSIPVG-----LGPVGLAVDPDGKYVYVANAGNG------NNTVSVIDAATNKV-- 152 (381)
T ss_pred eEEEecCCCCeEEEEcCccc-ceeeEeeec-----cCCceEEECCCCCEEEEEecccC------CceEEEEeCCCCeE--
Confidence 56666656677999986543 111222221 12345779999998877654321 16799999988763
Q ss_pred ceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEE----EcCCCCCccccCcCceeCCC
Q 006979 236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC----VAGFDPTIVESPTEPKWSSK 311 (623)
Q Consensus 236 ~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ws~D 311 (623)
...+..+.. .....++|||++++... . ....|.++|.+... ..+- .-... .......+++|
T Consensus 153 ~~~~~vG~~-P~~~a~~p~g~~vyv~~-~------~~~~v~vi~~~~~~---v~~~~~~~~~~~~----~~P~~i~v~~~ 217 (381)
T COG3391 153 TATIPVGNT-PTGVAVDPDGNKVYVTN-S------DDNTVSVIDTSGNS---VVRGSVGSLVGVG----TGPAGIAVDPD 217 (381)
T ss_pred EEEEecCCC-cceEEECCCCCeEEEEe-c------CCCeEEEEeCCCcc---eeccccccccccC----CCCceEEECCC
Confidence 122222221 24567999999887664 2 24568888865541 1110 01111 35568899999
Q ss_pred CcEEEEEeCCCCeeeEEEEecCCCeEEEEe-ecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCC
Q 006979 312 GELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG 390 (623)
Q Consensus 312 G~l~~~~~~~~g~~~L~~~d~~~~~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~ 390 (623)
|+.+|+.+..+....+.++|..++...... +.... .+ ..... +|+++.+|..... ...++.+|..+
T Consensus 218 g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~--~~------~~v~~---~p~g~~~yv~~~~--~~~V~vid~~~ 284 (381)
T COG3391 218 GNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG--AP------RGVAV---DPAGKAAYVANSQ--GGTVSVIDGAT 284 (381)
T ss_pred CCEEEEEeccCCCceEEEEeCCCceEEEeccccccC--CC------CceeE---CCCCCEEEEEecC--CCeEEEEeCCC
Confidence 995556655243467888998887655431 11110 00 01112 2377777776543 45677787666
Q ss_pred Ccee
Q 006979 391 HSLS 394 (623)
Q Consensus 391 ~~~~ 394 (623)
..+.
T Consensus 285 ~~v~ 288 (381)
T COG3391 285 DRVV 288 (381)
T ss_pred Ccee
Confidence 5443
No 284
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.52 E-value=1.1 Score=47.19 Aligned_cols=235 Identities=10% Similarity=0.043 Sum_probs=109.8
Q ss_pred EEeCCEEEEEeCCCCcEEEEeCCCCCCCce-ecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 006979 151 RIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (623)
Q Consensus 151 ~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~-~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~ 229 (623)
.+.++.+++.. .++.|+.+|..+| +.. +.... ......+.. +++.+++...+ ..|+.+|.+
T Consensus 62 ~v~~~~v~v~~-~~g~v~a~d~~tG--~~~W~~~~~----~~~~~~p~v--~~~~v~v~~~~---------g~l~ald~~ 123 (377)
T TIGR03300 62 AVAGGKVYAAD-ADGTVVALDAETG--KRLWRVDLD----ERLSGGVGA--DGGLVFVGTEK---------GEVIALDAE 123 (377)
T ss_pred EEECCEEEEEC-CCCeEEEEEccCC--cEeeeecCC----CCcccceEE--cCCEEEEEcCC---------CEEEEEECC
Confidence 33455555543 5567999998877 321 11111 111223333 45556554332 579999998
Q ss_pred CCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCc-cccCcCcee
Q 006979 230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI-VESPTEPKW 308 (623)
Q Consensus 230 ~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~w 308 (623)
+|+... ....+......|.. ++.++++.. . ...|+.+|.+++. ..+......+.. ......|..
T Consensus 124 tG~~~W--~~~~~~~~~~~p~v--~~~~v~v~~-~-------~g~l~a~d~~tG~---~~W~~~~~~~~~~~~~~~sp~~ 188 (377)
T TIGR03300 124 DGKELW--RAKLSSEVLSPPLV--ANGLVVVRT-N-------DGRLTALDAATGE---RLWTYSRVTPALTLRGSASPVI 188 (377)
T ss_pred CCcEee--eeccCceeecCCEE--ECCEEEEEC-C-------CCeEEEEEcCCCc---eeeEEccCCCceeecCCCCCEE
Confidence 887311 11222233344544 344555442 1 3459999987763 222222111000 001123333
Q ss_pred CCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccc--cccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEE
Q 006979 309 SSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFS--RPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 386 (623)
Q Consensus 309 s~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~--~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~ 386 (623)
. ++.+++ ... .+ .++.+|+.+|+..--.......+ ..........-..+ .++.+|+... +| .|+.+
T Consensus 189 ~-~~~v~~-~~~-~g--~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~----~~~~vy~~~~-~g--~l~a~ 256 (377)
T TIGR03300 189 A-DGGVLV-GFA-GG--KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV----DGGQVYAVSY-QG--RVAAL 256 (377)
T ss_pred E-CCEEEE-ECC-CC--EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE----ECCEEEEEEc-CC--EEEEE
Confidence 2 343443 332 23 68889988876321111000000 00000000000111 4556666543 33 58889
Q ss_pred eCCCCceeecccCCcceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979 387 DDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (623)
Q Consensus 387 d~~~~~~~~lt~~~~~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~ 435 (623)
|.++|+..--.. ..........++++|+... ...++.++.++|+
T Consensus 257 d~~tG~~~W~~~-~~~~~~p~~~~~~vyv~~~----~G~l~~~d~~tG~ 300 (377)
T TIGR03300 257 DLRSGRVLWKRD-ASSYQGPAVDDNRLYVTDA----DGVVVALDRRSGS 300 (377)
T ss_pred ECCCCcEEEeec-cCCccCceEeCCEEEEECC----CCeEEEEECCCCc
Confidence 988876532111 1111122345777776542 3579999998886
No 285
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=96.48 E-value=0.17 Score=49.74 Aligned_cols=119 Identities=7% Similarity=-0.087 Sum_probs=68.1
Q ss_pred ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCc
Q 006979 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 272 (623)
Q Consensus 193 ~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~ 272 (623)
..-..|++-|.+|+.-..+ +.++++|..+-.. .+.|...-.-+...+||+||++|.-.+.|
T Consensus 26 a~~~~Fs~~G~~lAvGc~n---------G~vvI~D~~T~~i--ar~lsaH~~pi~sl~WS~dgr~LltsS~D-------- 86 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCAN---------GRVVIYDFDTFRI--ARMLSAHVRPITSLCWSRDGRKLLTSSRD-------- 86 (405)
T ss_pred cceEEeccCcceeeeeccC---------CcEEEEEccccch--hhhhhccccceeEEEecCCCCEeeeecCC--------
Confidence 3446799999988876654 6688999988651 23333333445678899999998755433
Q ss_pred eEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEe
Q 006979 273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY 341 (623)
Q Consensus 273 ~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~ 341 (623)
..+-+.|+..+..+ .++.... -+....|.|-.+ ...+..- +.... .++...++.+.|.
T Consensus 87 ~si~lwDl~~gs~l--~rirf~s------pv~~~q~hp~k~n~~va~~~-~~sp~--vi~~s~~~h~~Lp 145 (405)
T KOG1273|consen 87 WSIKLWDLLKGSPL--KRIRFDS------PVWGAQWHPRKRNKCVATIM-EESPV--VIDFSDPKHSVLP 145 (405)
T ss_pred ceeEEEeccCCCce--eEEEccC------ccceeeeccccCCeEEEEEe-cCCcE--EEEecCCceeecc
Confidence 23677788776432 2222221 234566777554 4444433 22223 3344344444443
No 286
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.47 E-value=0.035 Score=60.52 Aligned_cols=152 Identities=11% Similarity=0.019 Sum_probs=93.1
Q ss_pred ceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCE-EEEEeCCCCcEEEEe
Q 006979 93 GTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDT-VIFSNYKDQRLYKHS 171 (623)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~-l~f~~~~~~~l~~~d 171 (623)
.++++| ..+||... ..+....||..+.. .+.+++.... ....++.+.++. .++....|..+.+||
T Consensus 498 dV~F~P-~GyYFata--s~D~tArLWs~d~~---~PlRifaghl--------sDV~cv~FHPNs~Y~aTGSsD~tVRlWD 563 (707)
T KOG0263|consen 498 DVQFAP-RGYYFATA--SHDQTARLWSTDHN---KPLRIFAGHL--------SDVDCVSFHPNSNYVATGSSDRTVRLWD 563 (707)
T ss_pred eEEecC-CceEEEec--CCCceeeeeecccC---Cchhhhcccc--------cccceEEECCcccccccCCCCceEEEEE
Confidence 355564 34666654 22466677766543 4444443221 124556666663 333444455688888
Q ss_pred CCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceee
Q 006979 172 IDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRM 251 (623)
Q Consensus 172 ~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~w 251 (623)
..+| ..+|..+.. .......++||+|++|+-..++ +.|.++|+.+|.. +.++.+..+.....+|
T Consensus 564 v~~G-~~VRiF~GH----~~~V~al~~Sp~Gr~LaSg~ed---------~~I~iWDl~~~~~--v~~l~~Ht~ti~SlsF 627 (707)
T KOG0263|consen 564 VSTG-NSVRIFTGH----KGPVTALAFSPCGRYLASGDED---------GLIKIWDLANGSL--VKQLKGHTGTIYSLSF 627 (707)
T ss_pred cCCC-cEEEEecCC----CCceEEEEEcCCCceEeecccC---------CcEEEEEcCCCcc--hhhhhcccCceeEEEE
Confidence 8877 445555543 3456778999999998775554 5688889998863 3444444556677899
Q ss_pred CCCCCEEEEEEecCCCCCCCceEEEEEEecC
Q 006979 252 DPRGERMAWIEWHHPNMPWDKAELWVGYISE 282 (623)
Q Consensus 252 SPDG~~la~~~~~~~~~p~~~~~L~v~d~~~ 282 (623)
|.||.-|+.-..| +.|.+.|+..
T Consensus 628 S~dg~vLasgg~D--------nsV~lWD~~~ 650 (707)
T KOG0263|consen 628 SRDGNVLASGGAD--------NSVRLWDLTK 650 (707)
T ss_pred ecCCCEEEecCCC--------CeEEEEEchh
Confidence 9999977755433 2355557653
No 287
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=96.42 E-value=0.031 Score=61.27 Aligned_cols=90 Identities=8% Similarity=0.085 Sum_probs=60.2
Q ss_pred eEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCcc
Q 006979 221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 300 (623)
Q Consensus 221 ~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~ 300 (623)
..|.++|..+.++ +|.+-+..+-.+...||||||||+-.+.|. .|.++|+.++..+.- +..+
T Consensus 556 f~I~vvD~~t~kv--vR~f~gh~nritd~~FS~DgrWlisasmD~--------tIr~wDlpt~~lID~--~~vd------ 617 (910)
T KOG1539|consen 556 FSIRVVDVVTRKV--VREFWGHGNRITDMTFSPDGRWLISASMDS--------TIRTWDLPTGTLIDG--LLVD------ 617 (910)
T ss_pred eeEEEEEchhhhh--hHHhhccccceeeeEeCCCCcEEEEeecCC--------cEEEEeccCcceeee--EecC------
Confidence 6799999988763 444544455667789999999999887554 388999988743221 1122
Q ss_pred ccCcCceeCCCCcEEEEEeCCCCeeeEEEE
Q 006979 301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKW 330 (623)
Q Consensus 301 ~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~ 330 (623)
.-.....++|+|.++.+... +...||.+
T Consensus 618 ~~~~sls~SPngD~LAT~Hv--d~~gIylW 645 (910)
T KOG1539|consen 618 SPCTSLSFSPNGDFLATVHV--DQNGIYLW 645 (910)
T ss_pred CcceeeEECCCCCEEEEEEe--cCceEEEE
Confidence 12357889999996666655 33445544
No 288
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=96.38 E-value=0.072 Score=55.24 Aligned_cols=143 Identities=15% Similarity=0.063 Sum_probs=84.9
Q ss_pred EEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 006979 151 RIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (623)
Q Consensus 151 ~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~ 229 (623)
+.++| .|.|+-..+|.|.++|+... ..++++... ..-..-..+|+||..|+---- .+.+.-+|+.
T Consensus 516 a~spDakvcFsccsdGnI~vwDLhnq-~~VrqfqGh----tDGascIdis~dGtklWTGGl---------DntvRcWDlr 581 (705)
T KOG0639|consen 516 AISPDAKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGH----TDGASCIDISKDGTKLWTGGL---------DNTVRCWDLR 581 (705)
T ss_pred hcCCccceeeeeccCCcEEEEEcccc-eeeecccCC----CCCceeEEecCCCceeecCCC---------ccceeehhhh
Confidence 34566 89999999999999999854 345666543 112234568899987754221 1567788887
Q ss_pred CCCcccceecccCCCc---ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCc
Q 006979 230 GQNIQEPKVLVSGSDF---YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 306 (623)
Q Consensus 230 ~g~~~~~~~l~~~~~~---~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (623)
.+. ++. ..+| +.....+|.|.||+.- +. .+.+++....+. .+-.+.-.+ --+-..
T Consensus 582 egr-----qlq-qhdF~SQIfSLg~cP~~dWlavG-Me-------ns~vevlh~skp----~kyqlhlhe----ScVLSl 639 (705)
T KOG0639|consen 582 EGR-----QLQ-QHDFSSQIFSLGYCPTGDWLAVG-ME-------NSNVEVLHTSKP----EKYQLHLHE----SCVLSL 639 (705)
T ss_pred hhh-----hhh-hhhhhhhheecccCCCccceeee-cc-------cCcEEEEecCCc----cceeecccc----cEEEEE
Confidence 764 222 1233 2234579999999843 22 334677665544 333333333 334567
Q ss_pred eeCCCCcEEEEEeCCCCeeeEEEE
Q 006979 307 KWSSKGELFFVTDRKNGFWNLHKW 330 (623)
Q Consensus 307 ~ws~DG~l~~~~~~~~g~~~L~~~ 330 (623)
.|++=|+.+..... ++.-+.|+.
T Consensus 640 KFa~cGkwfvStGk-DnlLnawrt 662 (705)
T KOG0639|consen 640 KFAYCGKWFVSTGK-DNLLNAWRT 662 (705)
T ss_pred EecccCceeeecCc-hhhhhhccC
Confidence 88888864433332 444555554
No 289
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.36 E-value=0.0079 Score=53.55 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=46.1
Q ss_pred HHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHHhhhh
Q 006979 560 SCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVIISEE 616 (623)
Q Consensus 560 ~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~~~~ 616 (623)
+--+|++++-. |.+..+.|.|+|||.++... +||++|..+|+.+|+.|..++...
T Consensus 89 AyerYv~eEal--pgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardffg~ 144 (227)
T COG4947 89 AYERYVIEEAL--PGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFFGG 144 (227)
T ss_pred HHHHHHHHhhc--CCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhccc
Confidence 34457777632 57788899999999999998 999999999999999999887553
No 290
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=96.35 E-value=0.016 Score=59.58 Aligned_cols=170 Identities=14% Similarity=0.191 Sum_probs=96.2
Q ss_pred EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (623)
Q Consensus 156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~ 235 (623)
.++++...++.|..+|..++ + +...++..-....+..|-|+|++.+-..++. .+.+.+-..+-
T Consensus 313 n~fl~G~sd~ki~~wDiRs~--k---vvqeYd~hLg~i~~i~F~~~g~rFissSDdk---------s~riWe~~~~v--- 375 (503)
T KOG0282|consen 313 NIFLVGGSDKKIRQWDIRSG--K---VVQEYDRHLGAILDITFVDEGRRFISSSDDK---------SVRIWENRIPV--- 375 (503)
T ss_pred cEEEEecCCCcEEEEeccch--H---HHHHHHhhhhheeeeEEccCCceEeeeccCc---------cEEEEEcCCCc---
Confidence 67778778888999998876 2 2222211123466788889999887766543 34455554443
Q ss_pred ceecccCCCcccce--eeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc
Q 006979 236 PKVLVSGSDFYAFP--RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 313 (623)
Q Consensus 236 ~~~l~~~~~~~~~p--~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~ 313 (623)
+..+.....-.+.| ..+|.|++++-.+.+ ..|+++.+...-....++.+.+..-. ++..+..+||||+
T Consensus 376 ~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~d--------N~i~ifs~~~~~r~nkkK~feGh~va--Gys~~v~fSpDG~ 445 (503)
T KOG0282|consen 376 PIKNIADPEMHTMPCLTLHPNGKWFAAQSMD--------NYIAIFSTVPPFRLNKKKRFEGHSVA--GYSCQVDFSPDGR 445 (503)
T ss_pred cchhhcchhhccCcceecCCCCCeehhhccC--------ceEEEEecccccccCHhhhhcceecc--CceeeEEEcCCCC
Confidence 22222222233334 489999987755432 24666654433222234445554322 5667899999998
Q ss_pred EEEEEeCCCCeeeEEEEecCCCeE-EEEeeccccccccccccc
Q 006979 314 LFFVTDRKNGFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVFG 355 (623)
Q Consensus 314 l~~~~~~~~g~~~L~~~d~~~~~~-~~l~~~~~~~~~~~w~~~ 355 (623)
.++..+. .| .++.+|-.+-++ ..+...+..+.+..|.+.
T Consensus 446 ~l~SGds-dG--~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~ 485 (503)
T KOG0282|consen 446 TLCSGDS-DG--KVNFWDWKTTKLVSKLKAHDQPCIGVDWHPV 485 (503)
T ss_pred eEEeecC-Cc--cEEEeechhhhhhhccccCCcceEEEEecCC
Confidence 6665554 45 455555544332 233333344555677763
No 291
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.34 E-value=0.15 Score=53.60 Aligned_cols=137 Identities=12% Similarity=0.093 Sum_probs=73.4
Q ss_pred ceeeCCCCCEEEEEEeccCCCC---CCceeEEEEEEcCC--CCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCC
Q 006979 195 DGIFDPRFNRYVTVREDRRQDA---LNSTTEIVAIALNG--QNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP 269 (623)
Q Consensus 195 d~~~sPdG~~l~~v~~~~~~~~---~~~~~~L~~idl~~--g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p 269 (623)
..+|+++|+.++..+.+..... .....+|++++-.+ |.....+++..+.....+..+.+|| |++. +.
T Consensus 18 ~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~--~~---- 89 (367)
T TIGR02604 18 AVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVA--TP---- 89 (367)
T ss_pred eeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEe--CC----
Confidence 3678899975444332211110 01123677776532 3322235566666666778899998 5544 22
Q ss_pred CCceEEEEE-EecCCCcee--eeEEEcCCCCC---ccccCcCceeCCCCcEEEEEeCCC----------------CeeeE
Q 006979 270 WDKAELWVG-YISENGDVY--KRVCVAGFDPT---IVESPTEPKWSSKGELFFVTDRKN----------------GFWNL 327 (623)
Q Consensus 270 ~~~~~L~v~-d~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~ws~DG~l~~~~~~~~----------------g~~~L 327 (623)
.+|+.+ +.++.+... ...++.+.... .......+.|.|||+||+...... ....+
T Consensus 90 ---~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i 166 (367)
T TIGR02604 90 ---PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGL 166 (367)
T ss_pred ---CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceE
Confidence 247766 444332211 22333333211 013466899999998887543200 01368
Q ss_pred EEEecCCCeEEEEee
Q 006979 328 HKWIESNNEVLAIYS 342 (623)
Q Consensus 328 ~~~d~~~~~~~~l~~ 342 (623)
+++++++++.+.+..
T Consensus 167 ~r~~pdg~~~e~~a~ 181 (367)
T TIGR02604 167 FRYNPDGGKLRVVAH 181 (367)
T ss_pred EEEecCCCeEEEEec
Confidence 999998887766543
No 292
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=96.34 E-value=0.54 Score=46.48 Aligned_cols=148 Identities=11% Similarity=0.085 Sum_probs=79.4
Q ss_pred EEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCC--eeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEc-CCCCc
Q 006979 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPL--VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL-NGQNI 233 (623)
Q Consensus 157 l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~--~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl-~~g~~ 233 (623)
++.+..+++-|.++|.-+| +.+.-=..++... .-.-...|||||.+|++-- .+.|.++|+ ..|..
T Consensus 125 l~a~ssr~~PIh~wdaftG--~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy----------krcirvFdt~RpGr~ 192 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTG--KLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY----------KRCIRVFDTSRPGRD 192 (406)
T ss_pred eeeeccccCceeeeecccc--ccccchhhhhhHHhhhhheeEEecCCCCeEeecc----------cceEEEeeccCCCCC
Confidence 4444445566999998777 3221111111000 0112467999999998742 256888887 33432
Q ss_pred cc-ceecccC----CCcccceeeCCCC-CEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCce
Q 006979 234 QE-PKVLVSG----SDFYAFPRMDPRG-ERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 307 (623)
Q Consensus 234 ~~-~~~l~~~----~~~~~~p~wSPDG-~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (623)
-. ...++.+ ....+..++||-. +.+++-+.-. .+-++..++.+ .-.++-+.. +.+....
T Consensus 193 c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q--------~~giy~~~~~~---pl~llggh~----gGvThL~ 257 (406)
T KOG2919|consen 193 CPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQ--------RVGIYNDDGRR---PLQLLGGHG----GGVTHLQ 257 (406)
T ss_pred CcchhhhhcccccccceeeeeeccCCCCcceeeecccc--------eeeeEecCCCC---ceeeecccC----CCeeeEE
Confidence 11 1223332 2345566789954 4666654321 24444444442 333444544 7899999
Q ss_pred eCCCCcEEEEEeCCCCeeeEEEEecC
Q 006979 308 WSSKGELFFVTDRKNGFWNLHKWIES 333 (623)
Q Consensus 308 ws~DG~l~~~~~~~~g~~~L~~~d~~ 333 (623)
|.+||.-+|...+... .|..+|+.
T Consensus 258 ~~edGn~lfsGaRk~d--kIl~WDiR 281 (406)
T KOG2919|consen 258 WCEDGNKLFSGARKDD--KILCWDIR 281 (406)
T ss_pred eccCcCeecccccCCC--eEEEEeeh
Confidence 9999995555544222 45555553
No 293
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=96.32 E-value=0.027 Score=60.20 Aligned_cols=141 Identities=18% Similarity=0.185 Sum_probs=81.6
Q ss_pred EEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCc-----------------CCHHhHHHHcCceE
Q 006979 464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-----------------LNLSIQYWTSRGWA 526 (623)
Q Consensus 464 i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~-----------------~~~~~~~~a~~G~~ 526 (623)
+.+... .+..+..|++...+. .+..|+||++.|||+...... +.....-|.+. ..
T Consensus 16 l~~~~~-~~~~lfyw~~~s~~~------~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~~-an 87 (415)
T PF00450_consen 16 LPVNDN-ENAHLFYWFFESRND------PEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNKF-AN 87 (415)
T ss_dssp EEECTT-TTEEEEEEEEE-SSG------GCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGGT-SE
T ss_pred EecCCC-CCcEEEEEEEEeCCC------CCCccEEEEecCCceeccccccccccCceEEeecccccccccccccccc-cc
Confidence 444443 577888888877651 466799999999997544210 11233345555 68
Q ss_pred EEEECCCCCCCCchhHHHhhccCCc-cchHHHHHHHHH-HHHhCCCCCCCceEEEEcChHHHHHHHHh-----cC-----
Q 006979 527 FVDVNYGGSTGYGREFRERLLGRWG-IVDVNDCCSCAT-FLVGSGKADEKRLCITGGSAGGYTTLAAL-----AF----- 594 (623)
Q Consensus 527 v~~~d~rGs~~~g~~~~~~~~~~~g-~~~~~D~~~~~~-~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-----~~----- 594 (623)
+|.+|.+-++||...-.... ..+. ....+|+..+++ |+.+.+......+.|.|-||||..+-.++ ..
T Consensus 88 ~l~iD~PvGtGfS~~~~~~~-~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~ 166 (415)
T PF00450_consen 88 LLFIDQPVGTGFSYGNDPSD-YVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQ 166 (415)
T ss_dssp EEEE--STTSTT-EESSGGG-GS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--S
T ss_pred eEEEeecCceEEeecccccc-ccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccc
Confidence 88899775555544321111 1112 223456665555 45556666667999999999998765444 12
Q ss_pred -CCceeEEEecccCCCHHHh
Q 006979 595 -RDTFKAGASLYGVSIPVII 613 (623)
Q Consensus 595 -~~~f~a~v~~~g~~d~~~~ 613 (623)
.=-+++++...|.+|....
T Consensus 167 ~~inLkGi~IGng~~dp~~~ 186 (415)
T PF00450_consen 167 PKINLKGIAIGNGWIDPRIQ 186 (415)
T ss_dssp TTSEEEEEEEESE-SBHHHH
T ss_pred cccccccceecCcccccccc
Confidence 2348999999999998643
No 294
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=96.30 E-value=0.8 Score=45.15 Aligned_cols=147 Identities=12% Similarity=0.033 Sum_probs=80.3
Q ss_pred EEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 006979 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP 236 (623)
Q Consensus 157 l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~ 236 (623)
++-+.-.+|++..+|+.|- .-.+.|+.. -......+||+||++|+-.+.| +.+-..|+..|.. .
T Consensus 37 ~lAvGc~nG~vvI~D~~T~-~iar~lsaH----~~pi~sl~WS~dgr~LltsS~D---------~si~lwDl~~gs~--l 100 (405)
T KOG1273|consen 37 YLAVGCANGRVVIYDFDTF-RIARMLSAH----VRPITSLCWSRDGRKLLTSSRD---------WSIKLWDLLKGSP--L 100 (405)
T ss_pred eeeeeccCCcEEEEEcccc-chhhhhhcc----ccceeEEEecCCCCEeeeecCC---------ceeEEEeccCCCc--e
Confidence 3444556888999999874 233445432 1235678999999999876654 5677888877752 3
Q ss_pred eecccCCCcccceeeCCCCCEEEEEE-ecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCC-CccccCcCceeCCCCcE
Q 006979 237 KVLVSGSDFYAFPRMDPRGERMAWIE-WHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP-TIVESPTEPKWSSKGEL 314 (623)
Q Consensus 237 ~~l~~~~~~~~~p~wSPDG~~la~~~-~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ws~DG~l 314 (623)
.++.... -+....|.|-.+..+.+. .+.. -+++++... ...+++..++ +-....+...+.+-|+.
T Consensus 101 ~rirf~s-pv~~~q~hp~k~n~~va~~~~~s--------p~vi~~s~~----~h~~Lp~d~d~dln~sas~~~fdr~g~y 167 (405)
T KOG1273|consen 101 KRIRFDS-PVWGAQWHPRKRNKCVATIMEES--------PVVIDFSDP----KHSVLPKDDDGDLNSSASHGVFDRRGKY 167 (405)
T ss_pred eEEEccC-ccceeeeccccCCeEEEEEecCC--------cEEEEecCC----ceeeccCCCccccccccccccccCCCCE
Confidence 3333221 122345777655444443 2322 355666653 3444443321 11122233347788885
Q ss_pred EEEEeCCCCeeeEEEEecCCC
Q 006979 315 FFVTDRKNGFWNLHKWIESNN 335 (623)
Q Consensus 315 ~~~~~~~~g~~~L~~~d~~~~ 335 (623)
++.... .|+ |..++.++-
T Consensus 168 IitGts-KGk--llv~~a~t~ 185 (405)
T KOG1273|consen 168 IITGTS-KGK--LLVYDAETL 185 (405)
T ss_pred EEEecC-cce--EEEEecchh
Confidence 555544 454 445555554
No 295
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=96.30 E-value=0.013 Score=56.94 Aligned_cols=95 Identities=11% Similarity=-0.008 Sum_probs=60.0
Q ss_pred EEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHH-HHHHHhCCCCCCCc
Q 006979 497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSC-ATFLVGSGKADEKR 575 (623)
Q Consensus 497 liv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~-~~~l~~~~~~d~~r 575 (623)
.|+++|++ +.....|...++.+...++.|..++++|-.... .....++++.+. ++.+.+.. ....
T Consensus 2 ~lf~~p~~--gG~~~~y~~la~~l~~~~~~v~~i~~~~~~~~~----------~~~~si~~la~~y~~~I~~~~--~~gp 67 (229)
T PF00975_consen 2 PLFCFPPA--GGSASSYRPLARALPDDVIGVYGIEYPGRGDDE----------PPPDSIEELASRYAEAIRARQ--PEGP 67 (229)
T ss_dssp EEEEESST--TCSGGGGHHHHHHHTTTEEEEEEECSTTSCTTS----------HEESSHHHHHHHHHHHHHHHT--SSSS
T ss_pred eEEEEcCC--ccCHHHHHHHHHhCCCCeEEEEEEecCCCCCCC----------CCCCCHHHHHHHHHHHhhhhC--CCCC
Confidence 46778887 335557778888887777999999999854111 112234443322 33333321 1238
Q ss_pred eEEEEcChHHHHHHHHhc----CCCceeEEEecc
Q 006979 576 LCITGGSAGGYTTLAALA----FRDTFKAGASLY 605 (623)
Q Consensus 576 v~i~G~S~GG~~~~~~~~----~~~~f~a~v~~~ 605 (623)
+.++|||+||.++..+++ .......++.+.
T Consensus 68 ~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD 101 (229)
T PF00975_consen 68 YVLAGWSFGGILAFEMARQLEEAGEEVSRLILID 101 (229)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHTT-SESEEEEES
T ss_pred eeehccCccHHHHHHHHHHHHHhhhccCceEEec
Confidence 999999999999998872 234466666665
No 296
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.031 Score=51.66 Aligned_cols=108 Identities=20% Similarity=0.182 Sum_probs=64.4
Q ss_pred CCEEEEecCCCCCccc---------CcC-----CHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHH
Q 006979 495 PPLLVKSHGGPTSEAR---------GIL-----NLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCS 560 (623)
Q Consensus 495 ~Pliv~~hGg~~~~~~---------~~~-----~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~ 560 (623)
.-++|++||.+-.... ..+ -+.+..-.+.||.|++.|.--...+-..+++.. .+-...++.+.-
T Consensus 101 ~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N~~~kfye~k~np~--kyirt~veh~~y 178 (297)
T KOG3967|consen 101 QKLLVLIHGSGVVRAGQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPNRERKFYEKKRNPQ--KYIRTPVEHAKY 178 (297)
T ss_pred cceEEEEecCceEecchHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCchhhhhhhcccCcc--hhccchHHHHHH
Confidence 3489999997422111 111 145666678899999998652222111111111 122244666666
Q ss_pred HHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCC---ceeEEEeccc
Q 006979 561 CATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRD---TFKAGASLYG 606 (623)
Q Consensus 561 ~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~---~f~a~v~~~g 606 (623)
+..+++.. ..++.|+++-||+||+.++-++ ++++ +|+-+...++
T Consensus 179 vw~~~v~p--a~~~sv~vvahsyGG~~t~~l~~~f~~d~~v~aialTDs~ 226 (297)
T KOG3967|consen 179 VWKNIVLP--AKAESVFVVAHSYGGSLTLDLVERFPDDESVFAIALTDSA 226 (297)
T ss_pred HHHHHhcc--cCcceEEEEEeccCChhHHHHHHhcCCccceEEEEeeccc
Confidence 66666654 4468999999999999999999 6653 4444443333
No 297
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=96.28 E-value=0.19 Score=50.79 Aligned_cols=208 Identities=9% Similarity=0.029 Sum_probs=110.4
Q ss_pred cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCCCCcEEE
Q 006979 91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYK 169 (623)
Q Consensus 91 ~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~~~~l~~ 169 (623)
.-.+.|+| .+.+.-. ..|+-..-+|..... +-.+.++..-.........-|.-.|-+....++++...++.+.+
T Consensus 84 vLDi~w~PfnD~vIAS---gSeD~~v~vW~IPe~--~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~i 158 (472)
T KOG0303|consen 84 VLDIDWCPFNDCVIAS---GSEDTKVMVWQIPEN--GLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSI 158 (472)
T ss_pred ccccccCccCCceeec---CCCCceEEEEECCCc--ccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEE
Confidence 34678888 6655322 234566667766543 44444441110000000011222333333467888888888999
Q ss_pred EeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCC--Cccc
Q 006979 170 HSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS--DFYA 247 (623)
Q Consensus 170 ~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~--~~~~ 247 (623)
+++.+| .....|.. +.......|+-||.+++-++.| -.|.++|...++ +..-..+. ....
T Consensus 159 Wnv~tg-eali~l~h-----pd~i~S~sfn~dGs~l~TtckD---------KkvRv~dpr~~~---~v~e~~~heG~k~~ 220 (472)
T KOG0303|consen 159 WNVGTG-EALITLDH-----PDMVYSMSFNRDGSLLCTTCKD---------KKVRVIDPRRGT---VVSEGVAHEGAKPA 220 (472)
T ss_pred EeccCC-ceeeecCC-----CCeEEEEEeccCCceeeeeccc---------ceeEEEcCCCCc---EeeecccccCCCcc
Confidence 999988 23334443 3556678899999998887765 458889998886 22111111 1122
Q ss_pred ceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeE
Q 006979 248 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNL 327 (623)
Q Consensus 248 ~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L 327 (623)
...|--||+ |+-+... .| ...++-+.|.+.-. +...+...+.. -.+--|-|.+|.+++|+...+++.-+-
T Consensus 221 Raifl~~g~-i~tTGfs--r~--seRq~aLwdp~nl~---eP~~~~elDtS--nGvl~PFyD~dt~ivYl~GKGD~~IRY 290 (472)
T KOG0303|consen 221 RAIFLASGK-IFTTGFS--RM--SERQIALWDPNNLE---EPIALQELDTS--NGVLLPFYDPDTSIVYLCGKGDSSIRY 290 (472)
T ss_pred eeEEeccCc-eeeeccc--cc--cccceeccCccccc---CcceeEEeccC--CceEEeeecCCCCEEEEEecCCcceEE
Confidence 334778887 5433322 22 23344444433221 11122211211 345678899998877777663444444
Q ss_pred EEEe
Q 006979 328 HKWI 331 (623)
Q Consensus 328 ~~~d 331 (623)
|.+.
T Consensus 291 yEit 294 (472)
T KOG0303|consen 291 FEIT 294 (472)
T ss_pred EEec
Confidence 4443
No 298
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=96.16 E-value=0.063 Score=54.58 Aligned_cols=146 Identities=16% Similarity=0.087 Sum_probs=93.7
Q ss_pred eEEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCC-CCCeeecceeeCCCCCEEEEEEeccCC---------CCCC
Q 006979 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYG-EPLVSYADGIFDPRFNRYVTVREDRRQ---------DALN 218 (623)
Q Consensus 149 ~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~-~~~~~~~d~~~sPdG~~l~~v~~~~~~---------~~~~ 218 (623)
+|....+.+++.+.--| |+.++..++ ..+.++...+ .+....++..++|+| -|+|+.....- -...
T Consensus 121 ~f~~~ggdL~VaDAYlG-L~~V~p~g~--~a~~l~~~~~G~~~kf~N~ldI~~~g-~vyFTDSSsk~~~rd~~~a~l~g~ 196 (376)
T KOG1520|consen 121 RFDKKGGDLYVADAYLG-LLKVGPEGG--LAELLADEAEGKPFKFLNDLDIDPEG-VVYFTDSSSKYDRRDFVFAALEGD 196 (376)
T ss_pred EeccCCCeEEEEeccee-eEEECCCCC--cceeccccccCeeeeecCceeEcCCC-eEEEeccccccchhheEEeeecCC
Confidence 34444445555543333 999999877 6777777633 333455678899966 45555332211 1234
Q ss_pred ceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcC-CCC
Q 006979 219 STTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG-FDP 297 (623)
Q Consensus 219 ~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~-~~~ 297 (623)
+.++|+++|..+.. .++|.++--|.++.+.|||+..+.|.+.. ..+|..+=+.+.. +....++.. .+
T Consensus 197 ~~GRl~~YD~~tK~---~~VLld~L~F~NGlaLS~d~sfvl~~Et~-------~~ri~rywi~g~k-~gt~EvFa~~LP- 264 (376)
T KOG1520|consen 197 PTGRLFRYDPSTKV---TKVLLDGLYFPNGLALSPDGSFVLVAETT-------TARIKRYWIKGPK-AGTSEVFAEGLP- 264 (376)
T ss_pred CccceEEecCcccc---hhhhhhcccccccccCCCCCCEEEEEeec-------cceeeeeEecCCc-cCchhhHhhcCC-
Confidence 56889999998887 77888888899999999999999988743 2345555554431 112344444 44
Q ss_pred CccccCcCceeCCCCc
Q 006979 298 TIVESPTEPKWSSKGE 313 (623)
Q Consensus 298 ~~~~~~~~~~ws~DG~ 313 (623)
+++..++-+++|.
T Consensus 265 ---G~PDNIR~~~~G~ 277 (376)
T KOG1520|consen 265 ---GYPDNIRRDSTGH 277 (376)
T ss_pred ---CCCcceeECCCCC
Confidence 5677888888885
No 299
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=96.16 E-value=0.084 Score=53.43 Aligned_cols=187 Identities=11% Similarity=-0.019 Sum_probs=113.1
Q ss_pred CCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCCCc
Q 006979 88 SKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQR 166 (623)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~~ 166 (623)
...++.+++||.+..|-..+ |+|+..||-.... .+.+.|.. |.+...+..|.+. .++++...++-
T Consensus 180 ~eaIRdlafSpnDskF~t~S---dDg~ikiWdf~~~--kee~vL~G---------HgwdVksvdWHP~kgLiasgskDnl 245 (464)
T KOG0284|consen 180 AEAIRDLAFSPNDSKFLTCS---DDGTIKIWDFRMP--KEERVLRG---------HGWDVKSVDWHPTKGLIASGSKDNL 245 (464)
T ss_pred hhhhheeccCCCCceeEEec---CCCeEEEEeccCC--chhheecc---------CCCCcceeccCCccceeEEccCCce
Confidence 35788999998555554443 3689888866544 23344432 3444567777766 67888777876
Q ss_pred EEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcc
Q 006979 167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFY 246 (623)
Q Consensus 167 l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~ 246 (623)
+-++|..+| ...-.|... ..-+....|+|+|++|+-..+| ..+-++|+.+-+ ++..+-...+++
T Consensus 246 VKlWDprSg-~cl~tlh~H----KntVl~~~f~~n~N~Llt~skD---------~~~kv~DiR~mk--El~~~r~Hkkdv 309 (464)
T KOG0284|consen 246 VKLWDPRSG-SCLATLHGH----KNTVLAVKFNPNGNWLLTGSKD---------QSCKVFDIRTMK--ELFTYRGHKKDV 309 (464)
T ss_pred eEeecCCCc-chhhhhhhc----cceEEEEEEcCCCCeeEEccCC---------ceEEEEehhHhH--HHHHhhcchhhh
Confidence 778899877 222222221 3446678899999999988776 457888887432 144444455677
Q ss_pred cceeeCCCCCEEEEEE-ecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEE
Q 006979 247 AFPRMDPRGERMAWIE-WHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVT 318 (623)
Q Consensus 247 ~~p~wSPDG~~la~~~-~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~ 318 (623)
....|+|=-.-|+-.. +|.+ |+...+....+ ...+-...+ ..+-...|.|=|.|+...
T Consensus 310 ~~~~WhP~~~~lftsgg~Dgs--------vvh~~v~~~~p--~~~i~~AHd----~~iwsl~~hPlGhil~tg 368 (464)
T KOG0284|consen 310 TSLTWHPLNESLFTSGGSDGS--------VVHWVVGLEEP--LGEIPPAHD----GEIWSLAYHPLGHILATG 368 (464)
T ss_pred eeeccccccccceeeccCCCc--------eEEEecccccc--ccCCCcccc----cceeeeeccccceeEeec
Confidence 7888999776665443 2221 33333332211 111111222 567788899988655543
No 300
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=96.16 E-value=0.032 Score=51.52 Aligned_cols=90 Identities=11% Similarity=0.046 Sum_probs=56.4
Q ss_pred EEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceE
Q 006979 498 LVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLC 577 (623)
Q Consensus 498 iv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~ 577 (623)
|+++||...+....-+.+..+.+.+. +.|-.+|.- ..+.++-...++..+.. +| +.+.
T Consensus 1 v~IvhG~~~s~~~HW~~wl~~~l~~~-~~V~~~~~~------------------~P~~~~W~~~l~~~i~~--~~-~~~i 58 (171)
T PF06821_consen 1 VLIVHGYGGSPPDHWQPWLERQLENS-VRVEQPDWD------------------NPDLDEWVQALDQAIDA--ID-EPTI 58 (171)
T ss_dssp EEEE--TTSSTTTSTHHHHHHHHTTS-EEEEEC--T------------------S--HHHHHHHHHHCCHC---T-TTEE
T ss_pred CEEeCCCCCCCccHHHHHHHHhCCCC-eEEeccccC------------------CCCHHHHHHHHHHHHhh--cC-CCeE
Confidence 57789886555544455667777777 777777641 11234444444443333 33 4699
Q ss_pred EEEcChHHHHHHHHh-c-CCCceeEEEecccCCC
Q 006979 578 ITGGSAGGYTTLAAL-A-FRDTFKAGASLYGVSI 609 (623)
Q Consensus 578 i~G~S~GG~~~~~~~-~-~~~~f~a~v~~~g~~d 609 (623)
++|||.|..+++..+ . ....+++++.++|...
T Consensus 59 lVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~ 92 (171)
T PF06821_consen 59 LVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDP 92 (171)
T ss_dssp EEEETHHHHHHHHHHHHTCCSSEEEEEEES--SC
T ss_pred EEEeCHHHHHHHHHHhhcccccccEEEEEcCCCc
Confidence 999999999999888 4 5779999999999854
No 301
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.14 E-value=1.3 Score=46.43 Aligned_cols=192 Identities=12% Similarity=0.067 Sum_probs=102.6
Q ss_pred ceeeCCCCCEEEEEEeccC---C---CCCCceeEEEEEEcCCCCcccceecccCC--Cccc--ceeeCCCCCEEEEEEec
Q 006979 195 DGIFDPRFNRYVTVREDRR---Q---DALNSTTEIVAIALNGQNIQEPKVLVSGS--DFYA--FPRMDPRGERMAWIEWH 264 (623)
Q Consensus 195 d~~~sPdG~~l~~v~~~~~---~---~~~~~~~~L~~idl~~g~~~~~~~l~~~~--~~~~--~p~wSPDG~~la~~~~~ 264 (623)
+..+||.|++|.--+.... + .+.+..+.+++.|..+|. +..-.... .... ...||-|.+++|.+.
T Consensus 76 ~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~---iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-- 150 (561)
T COG5354 76 YLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGM---IVFSFNGISQPYLGWPVLKFSIDDKYVARVV-- 150 (561)
T ss_pred ecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCce---eEeeccccCCcccccceeeeeecchhhhhhc--
Confidence 4558999998876544322 1 223344579999999986 22111111 0011 236899999988874
Q ss_pred CCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc---EEEEEeCCCC---eeeEEEEecCCCeEE
Q 006979 265 HPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE---LFFVTDRKNG---FWNLHKWIESNNEVL 338 (623)
Q Consensus 265 ~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~---l~~~~~~~~g---~~~L~~~d~~~~~~~ 338 (623)
...|+++++...-.......+. . .++..+.|+|.|. |.|..-...+ ...|+.+. .+..+.
T Consensus 151 -------~~sl~i~e~t~n~~~~p~~~lr--~----~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp-~~s~l~ 216 (561)
T COG5354 151 -------GSSLYIHEITDNIEEHPFKNLR--P----VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIP-KNSVLV 216 (561)
T ss_pred -------cCeEEEEecCCccccCchhhcc--c----cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEcc-CCCeee
Confidence 3348999873321101111111 1 4667889999753 4544433233 34566664 222222
Q ss_pred EEeecccccccccccccCcceeEEeecCCCCEEEEEEEEC--------CeEEEEEEeCCCCceeecccCCcceEee--ee
Q 006979 339 AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN--------GRSYLGILDDFGHSLSLLDIPFTDIDNI--TL 408 (623)
Q Consensus 339 ~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~--------g~~~L~~~d~~~~~~~~lt~~~~~v~~~--~~ 408 (623)
..+-.+.+-....|.. .|+.+++...++ |.+.||++++....++..-.-.+.|..+ .+
T Consensus 217 tk~lfk~~~~qLkW~~------------~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p 284 (561)
T COG5354 217 TKNLFKVSGVQLKWQV------------LGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEP 284 (561)
T ss_pred eeeeEeecccEEEEec------------CCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecc
Confidence 2222222333456665 455555544322 4588999998755544321213334444 66
Q ss_pred cCCEEEEEE
Q 006979 409 GNDCLFVEG 417 (623)
Q Consensus 409 ~~~~~~~~~ 417 (623)
.++++.++.
T Consensus 285 ~S~~F~vi~ 293 (561)
T COG5354 285 LSSRFAVIS 293 (561)
T ss_pred cCCceeEEe
Confidence 777777765
No 302
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=96.13 E-value=1.2 Score=45.84 Aligned_cols=197 Identities=11% Similarity=0.113 Sum_probs=110.3
Q ss_pred EEEEEeCCCCcEEEEeCCCCCCCceecCCC--CCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 006979 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPD--YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (623)
Q Consensus 156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~--~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~ 233 (623)
..+.+...++.+-++|+.......+.+.+. ...-...+.|.+|+|-...+++...+. +.|.+.|+.+++.
T Consensus 191 g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd--------~~L~iwD~R~~~~ 262 (422)
T KOG0264|consen 191 GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDD--------GKLMIWDTRSNTS 262 (422)
T ss_pred eeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCC--------CeEEEEEcCCCCC
Confidence 455566667778888887531111122211 111134577899999888887766554 6799999985321
Q ss_pred ccceecccC-CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCC
Q 006979 234 QEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 312 (623)
Q Consensus 234 ~~~~~l~~~-~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG 312 (623)
+++..... ..-+...+|+|=+..|.-.... ...|.+.|+..-.. ....+.+.+ ..+.++.|||.-
T Consensus 263 -~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~-------D~tV~LwDlRnL~~--~lh~~e~H~----dev~~V~WSPh~ 328 (422)
T KOG0264|consen 263 -KPSHSVKAHSAEVNCVAFNPFNEFILATGSA-------DKTVALWDLRNLNK--PLHTFEGHE----DEVFQVEWSPHN 328 (422)
T ss_pred -CCcccccccCCceeEEEeCCCCCceEEeccC-------CCcEEEeechhccc--CceeccCCC----cceEEEEeCCCC
Confidence 12222222 2224457899988777655422 23488888865421 233344544 567899999998
Q ss_pred c-EEEEEeCCCCeeeEEEEecCCCe----------EEEEeec---ccccccccccccCcceeEEeecCCCCEEEEEEEEC
Q 006979 313 E-LFFVTDRKNGFWNLHKWIESNNE----------VLAIYSL---DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN 378 (623)
Q Consensus 313 ~-l~~~~~~~~g~~~L~~~d~~~~~----------~~~l~~~---~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~ 378 (623)
. ++..+.. ++.-++|-++-.+.+ .+.|... ...+....|.+ ...+++.+..++
T Consensus 329 etvLASSg~-D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp------------~ePW~I~SvaeD 395 (422)
T KOG0264|consen 329 ETVLASSGT-DRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNP------------NEPWTIASVAED 395 (422)
T ss_pred CceeEeccc-CCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCC------------CCCeEEEEecCC
Confidence 7 6655543 454444433221211 1112211 11122233332 677888888888
Q ss_pred CeEEEEEEe
Q 006979 379 GRSYLGILD 387 (623)
Q Consensus 379 g~~~L~~~d 387 (623)
+.-+||...
T Consensus 396 N~LqIW~~s 404 (422)
T KOG0264|consen 396 NILQIWQMA 404 (422)
T ss_pred ceEEEeecc
Confidence 888888664
No 303
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=96.12 E-value=0.018 Score=56.14 Aligned_cols=114 Identities=16% Similarity=0.028 Sum_probs=70.4
Q ss_pred CCCEEEEecCCCCCcccCcCCHHhHHHHcCce--EEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCC
Q 006979 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGW--AFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 571 (623)
Q Consensus 494 ~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~--~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~ 571 (623)
...++|++||.-.. ........+|.....|| .++.+..+..+. -..|...- .-......++...++.|.+. .
T Consensus 17 ~~~vlvfVHGyn~~-f~~a~~r~aql~~~~~~~~~~i~FsWPS~g~-~~~Y~~d~--~~a~~s~~~l~~~L~~L~~~--~ 90 (233)
T PF05990_consen 17 DKEVLVFVHGYNNS-FEDALRRAAQLAHDLGFPGVVILFSWPSDGS-LLGYFYDR--ESARFSGPALARFLRDLARA--P 90 (233)
T ss_pred CCeEEEEEeCCCCC-HHHHHHHHHHHHHHhCCCceEEEEEcCCCCC-hhhhhhhh--hhHHHHHHHHHHHHHHHHhc--c
Confidence 45699999998322 22233344555444444 788899886543 22222111 11112344555666666655 2
Q ss_pred CCCceEEEEcChHHHHHHHHh-c----CC-----CceeEEEecccCCCHHHh
Q 006979 572 DEKRLCITGGSAGGYTTLAAL-A----FR-----DTFKAGASLYGVSIPVII 613 (623)
Q Consensus 572 d~~rv~i~G~S~GG~~~~~~~-~----~~-----~~f~a~v~~~g~~d~~~~ 613 (623)
...+|-|++||||+++++.++ . .. ..|.-+|..+|=.|...+
T Consensus 91 ~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~d~f 142 (233)
T PF05990_consen 91 GIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDNDVF 142 (233)
T ss_pred CCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCHHHH
Confidence 357999999999999999887 2 11 267788888888877554
No 304
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=96.09 E-value=0.19 Score=49.29 Aligned_cols=198 Identities=12% Similarity=0.059 Sum_probs=101.8
Q ss_pred eeecCCceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCce
Q 006979 142 AQEYGGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNST 220 (623)
Q Consensus 142 ~~~~g~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~ 220 (623)
.|..|..+..++.| .-+.+...|..+.+--+++| .-.+..... ...+++..|++||++|+-.+.|
T Consensus 304 AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG-K~LKEfrGH----sSyvn~a~ft~dG~~iisaSsD--------- 369 (508)
T KOG0275|consen 304 AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG-KCLKEFRGH----SSYVNEATFTDDGHHIISASSD--------- 369 (508)
T ss_pred hhccCeeEEEEccCcchhhcccccceEEEeccccc-hhHHHhcCc----cccccceEEcCCCCeEEEecCC---------
Confidence 35667777777766 33344444555656666665 222222221 3456788899999999876654
Q ss_pred eEEEEEEcCCCCc-ccceecccCCCcccceeeCCC-CCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCC
Q 006979 221 TEIVAIALNGQNI-QEPKVLVSGSDFYAFPRMDPR-GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT 298 (623)
Q Consensus 221 ~~L~~idl~~g~~-~~~~~l~~~~~~~~~p~wSPD-G~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~ 298 (623)
..+-+.+..+++- ..-+.+..+.. ++..-.-|- -..+... ++ .+.+|++++.+. ..+.+.....+
T Consensus 370 gtvkvW~~KtteC~~Tfk~~~~d~~-vnsv~~~PKnpeh~iVC--Nr------sntv~imn~qGQ----vVrsfsSGkRE 436 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKPLGTDYP-VNSVILLPKNPEHFIVC--NR------SNTVYIMNMQGQ----VVRSFSSGKRE 436 (508)
T ss_pred ccEEEecCcchhhhhhccCCCCccc-ceeEEEcCCCCceEEEE--cC------CCeEEEEeccce----EEeeeccCCcc
Confidence 3456666665531 00111111111 111111121 1233322 33 235999999865 33333332211
Q ss_pred ccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEE-EeecccccccccccccCcceeEEeecCCCCEEEEEEE
Q 006979 299 IVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR 376 (623)
Q Consensus 299 ~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~-l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~ 376 (623)
.+..-....||.|. +|++..+ ..||.+...+|+.+. +.-.+.++-+..-. ..+.++.++.
T Consensus 437 -gGdFi~~~lSpkGewiYcigED----~vlYCF~~~sG~LE~tl~VhEkdvIGl~HH-------------PHqNllAsYs 498 (508)
T KOG0275|consen 437 -GGDFINAILSPKGEWIYCIGED----GVLYCFSVLSGKLERTLPVHEKDVIGLTHH-------------PHQNLLASYS 498 (508)
T ss_pred -CCceEEEEecCCCcEEEEEccC----cEEEEEEeecCceeeeeecccccccccccC-------------cccchhhhhc
Confidence 13344567899999 6666544 468888877777544 43333333222211 2345666666
Q ss_pred ECCeEEEE
Q 006979 377 QNGRSYLG 384 (623)
Q Consensus 377 ~~g~~~L~ 384 (623)
++|.-.||
T Consensus 499 EDgllKLW 506 (508)
T KOG0275|consen 499 EDGLLKLW 506 (508)
T ss_pred ccchhhhc
Confidence 66655444
No 305
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.08 E-value=2.3 Score=44.66 Aligned_cols=229 Identities=11% Similarity=0.036 Sum_probs=106.5
Q ss_pred EEeCCEEEEEeCCCCcEEEEeCCCCCCCce-ecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 006979 151 RIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (623)
Q Consensus 151 ~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~-~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~ 229 (623)
...++.+++ ...++.||.+|.++| +.. +.... ......+.. .++.+++...+ ..|+.+|+.
T Consensus 102 ~v~~~~v~v-~~~~g~l~ald~~tG--~~~W~~~~~----~~~~~~p~v--~~~~v~v~~~~---------g~l~a~d~~ 163 (377)
T TIGR03300 102 GADGGLVFV-GTEKGEVIALDAEDG--KELWRAKLS----SEVLSPPLV--ANGLVVVRTND---------GRLTALDAA 163 (377)
T ss_pred EEcCCEEEE-EcCCCEEEEEECCCC--cEeeeeccC----ceeecCCEE--ECCEEEEECCC---------CeEEEEEcC
Confidence 344455554 445678999999877 321 11111 122233333 23445443221 569999998
Q ss_pred CCCcccceecccCC---CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCC-----c-c
Q 006979 230 GQNIQEPKVLVSGS---DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT-----I-V 300 (623)
Q Consensus 230 ~g~~~~~~~l~~~~---~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~-----~-~ 300 (623)
+|+........... .....|... ++ .+++.. . ...|+.+|+.++.. ........... . .
T Consensus 164 tG~~~W~~~~~~~~~~~~~~~sp~~~-~~-~v~~~~-~-------~g~v~ald~~tG~~--~W~~~~~~~~g~~~~~~~~ 231 (377)
T TIGR03300 164 TGERLWTYSRVTPALTLRGSASPVIA-DG-GVLVGF-A-------GGKLVALDLQTGQP--LWEQRVALPKGRTELERLV 231 (377)
T ss_pred CCceeeEEccCCCceeecCCCCCEEE-CC-EEEEEC-C-------CCEEEEEEccCCCE--eeeeccccCCCCCchhhhh
Confidence 88731111111110 012334433 33 444332 2 23588888876632 11111110000 0 0
Q ss_pred ccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCe
Q 006979 301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 380 (623)
Q Consensus 301 ~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~ 380 (623)
.....|.. .++.+|+.... | .|+.+|+.+|+..--.. ... + ..... .++.+|+.. ..
T Consensus 232 ~~~~~p~~-~~~~vy~~~~~--g--~l~a~d~~tG~~~W~~~----~~~--~----~~p~~-----~~~~vyv~~---~~ 288 (377)
T TIGR03300 232 DVDGDPVV-DGGQVYAVSYQ--G--RVAALDLRSGRVLWKRD----ASS--Y----QGPAV-----DDNRLYVTD---AD 288 (377)
T ss_pred ccCCccEE-ECCEEEEEEcC--C--EEEEEECCCCcEEEeec----cCC--c----cCceE-----eCCEEEEEC---CC
Confidence 01123333 24435544332 3 58889988876331111 110 1 11122 566777664 23
Q ss_pred EEEEEEeCCCCcee-ec-ccCCcceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979 381 SYLGILDDFGHSLS-LL-DIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (623)
Q Consensus 381 ~~L~~~d~~~~~~~-~l-t~~~~~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~ 436 (623)
..|+.+|..+|+.. .. ..+..........++.+++... ...||.++.++|+.
T Consensus 289 G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~----~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 289 GVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDF----EGYLHWLSREDGSF 342 (377)
T ss_pred CeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeC----CCEEEEEECCCCCE
Confidence 46888998877643 12 1111112222335666665432 24799999888864
No 306
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=96.03 E-value=0.014 Score=57.43 Aligned_cols=111 Identities=15% Similarity=0.120 Sum_probs=64.7
Q ss_pred CCEEEEecCCCCCcccCcCCHHhHHHH-cCce----EEEEECCCCCCCCchhHHHhh-------ccCCcc-----chHHH
Q 006979 495 PPLLVKSHGGPTSEARGILNLSIQYWT-SRGW----AFVDVNYGGSTGYGREFRERL-------LGRWGI-----VDVND 557 (623)
Q Consensus 495 ~Pliv~~hGg~~~~~~~~~~~~~~~~a-~~G~----~v~~~d~rGs~~~g~~~~~~~-------~~~~g~-----~~~~D 557 (623)
.| .||+||. +.....+..+.+.+. ++|. .++.++.-|.-.+...+.... .-.... ....=
T Consensus 12 tP-TifihG~--~gt~~s~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~~~qa~w 88 (255)
T PF06028_consen 12 TP-TIFIHGY--GGTANSFNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANYKKQAKW 88 (255)
T ss_dssp EE-EEEE--T--TGGCCCCHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHHHHHHHH
T ss_pred Cc-EEEECCC--CCChhHHHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCHHHHHHH
Confidence 35 4568998 555668888888887 6553 355566555322222222110 001111 12344
Q ss_pred HHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cC---CC--ceeEEEecccCCCH
Q 006979 558 CCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AF---RD--TFKAGASLYGVSIP 610 (623)
Q Consensus 558 ~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~---~~--~f~a~v~~~g~~d~ 610 (623)
+..++.+|.++.-+ +++-++||||||...+..+ .+ ++ .+.-.|.+++..|-
T Consensus 89 l~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng 145 (255)
T PF06028_consen 89 LKKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNG 145 (255)
T ss_dssp HHHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTT
T ss_pred HHHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCc
Confidence 66888999988666 7999999999999999887 43 11 46777888776654
No 307
>PRK13614 lipoprotein LpqB; Provisional
Probab=96.02 E-value=0.8 Score=50.41 Aligned_cols=170 Identities=13% Similarity=0.137 Sum_probs=92.8
Q ss_pred ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCc
Q 006979 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 272 (623)
Q Consensus 193 ~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~ 272 (623)
...+..|++|+.++++..+. ..|++....+ . .+.+..+.. ...|.|+++| +| |+..+.. .
T Consensus 345 ~~s~avS~~g~~~A~~~~~~--------~~l~~~~~g~-~---~~~~~~g~~-Lt~PS~d~~g-~v-Wtv~~g~-----~ 404 (573)
T PRK13614 345 PASPAESPVSQTVAFLNGSR--------TTLYTVSPGQ-P---ARALTSGST-LTRPSFSPQD-WV-WTAGPGG-----N 404 (573)
T ss_pred ccceeecCCCceEEEecCCC--------cEEEEecCCC-c---ceeeecCCC-ccCCcccCCC-CE-EEeeCCC-----C
Confidence 44578999999999874321 4688777643 3 455555554 5669999999 55 5543321 2
Q ss_pred eEEEEEEecCCCceeeeEEEcCCCCCcc--ccCcCceeCCCCc-EEEEEeCCCCeeeEEE--E-ecCCCeEEEEeec---
Q 006979 273 AELWVGYISENGDVYKRVCVAGFDPTIV--ESPTEPKWSSKGE-LFFVTDRKNGFWNLHK--W-IESNNEVLAIYSL--- 343 (623)
Q Consensus 273 ~~L~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~--~-d~~~~~~~~l~~~--- 343 (623)
..|.++.-++.+.........-.. +|. ..+..++-|+||. ++++... .|..+|+. + ....|..+.|+..
T Consensus 405 ~~vv~~~~~g~~~~~~~~~~~v~~-~~l~g~~I~~lrvSrDG~R~Avi~~~-~g~~~V~va~V~R~~~G~P~~L~~~~~~ 482 (573)
T PRK13614 405 GRIVAYRPTGVAEGAQAPTVTLTA-DWLAGRTVKELRVSREGVRALVISEQ-NGKSRVQVAGIVRNEDGTPRELTAPITL 482 (573)
T ss_pred ceEEEEecCCCcccccccceeecc-cccCCCeeEEEEECCCccEEEEEEEe-CCccEEEEEEEEeCCCCCeEEccCceec
Confidence 355554433221101101110000 122 2378899999998 7766654 45544542 2 2345555666421
Q ss_pred --ccccccccccccCcceeEEeecCCCCEEEEEE-EECCeEEEEEEeCCCCceeecc
Q 006979 344 --DAEFSRPLWVFGINSYEIIQSHGEKNLIACSY-RQNGRSYLGILDDFGHSLSLLD 397 (623)
Q Consensus 344 --~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~-~~~g~~~L~~~d~~~~~~~~lt 397 (623)
........|. ++..|++.. ..++....+++.++++..+.+.
T Consensus 483 ~~~~~~~sl~W~-------------~~~sl~V~~~~~~~~~~~~~v~v~~g~~~~l~ 526 (573)
T PRK13614 483 AADSDADTGAWV-------------GDSTVVVTKASATSNVVPELLSVDAGQPQQLA 526 (573)
T ss_pred ccCCCcceeEEc-------------CCCEEEEEeccCCCcceEEEEEeCCCCcccCC
Confidence 1223334454 455665554 3455666777877666655443
No 308
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=96.02 E-value=1.6 Score=42.18 Aligned_cols=157 Identities=9% Similarity=0.014 Sum_probs=90.4
Q ss_pred CceEEEeCC---EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 006979 147 GGAFRIFGD---TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (623)
Q Consensus 147 ~~~~~~s~d---~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L 223 (623)
|.-|..+-| ..+.....|+.+-++|+.+| +..-++.. ...+....|+++|+.++++.++.-.. ...+
T Consensus 53 GavW~~Did~~s~~liTGSAD~t~kLWDv~tG-k~la~~k~-----~~~Vk~~~F~~~gn~~l~~tD~~mg~----~~~v 122 (327)
T KOG0643|consen 53 GAVWCCDIDWDSKHLITGSADQTAKLWDVETG-KQLATWKT-----NSPVKRVDFSFGGNLILASTDKQMGY----TCFV 122 (327)
T ss_pred ceEEEEEecCCcceeeeccccceeEEEEcCCC-cEEEEeec-----CCeeEEEeeccCCcEEEEEehhhcCc----ceEE
Confidence 344554422 45666667787889999988 22233332 12234456899999999988765322 2567
Q ss_pred EEEEcCCCC----c-ccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCC
Q 006979 224 VAIALNGQN----I-QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT 298 (623)
Q Consensus 224 ~~idl~~g~----~-~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~ 298 (623)
.++|+.... . +....+..........-|+|=|+.|..- ++ ...|-.+|+..+. ..+.....
T Consensus 123 ~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~G--he------~G~is~~da~~g~----~~v~s~~~-- 188 (327)
T KOG0643|consen 123 SVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAG--HE------DGSISIYDARTGK----ELVDSDEE-- 188 (327)
T ss_pred EEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEe--cC------CCcEEEEEcccCc----eeeechhh--
Confidence 777765321 0 1123333333444556799999988754 22 3348888988762 11211111
Q ss_pred ccccCcCceeCCCCcEEEEEeCCCCeeeEE
Q 006979 299 IVESPTEPKWSSKGELFFVTDRKNGFWNLH 328 (623)
Q Consensus 299 ~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~ 328 (623)
-...+.+.++++|...+..+.. +....|+
T Consensus 189 h~~~Ind~q~s~d~T~FiT~s~-Dttakl~ 217 (327)
T KOG0643|consen 189 HSSKINDLQFSRDRTYFITGSK-DTTAKLV 217 (327)
T ss_pred hccccccccccCCcceEEeccc-Cccceee
Confidence 1146788999999864444443 4444554
No 309
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=95.97 E-value=1.4 Score=46.70 Aligned_cols=159 Identities=10% Similarity=0.068 Sum_probs=89.0
Q ss_pred ceeeCCCCCEEEEEEecc---CCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCC
Q 006979 195 DGIFDPRFNRYVTVREDR---RQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 271 (623)
Q Consensus 195 d~~~sPdG~~l~~v~~~~---~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~ 271 (623)
...|.+-|+-|+++.... .+......+.||.++.++... ...|.... -+-...|||+|+..+.+- .-||-
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~--~V~L~k~G-PVhdv~W~~s~~EF~Vvy---GfMPA- 294 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV--SVPLLKEG-PVHDVTWSPSGREFAVVY---GFMPA- 294 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE--EEecCCCC-CceEEEECCCCCEEEEEE---ecccc-
Confidence 367999999888876432 222223458899999985431 23444222 233467999999988774 23432
Q ss_pred ceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeeccc-ccccc
Q 006979 272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA-EFSRP 350 (623)
Q Consensus 272 ~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~-~~~~~ 350 (623)
.+-++|+.+. .....+. +--....|+|-|.+++++..++=...+-.+|..+ .+.|...++ +.+-.
T Consensus 295 --kvtifnlr~~-----~v~df~e-----gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n--~K~i~~~~a~~tt~~ 360 (566)
T KOG2315|consen 295 --KVTIFNLRGK-----PVFDFPE-----GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN--RKLIAKFKAANTTVF 360 (566)
T ss_pred --eEEEEcCCCC-----EeEeCCC-----CCccceEECCCCCEEEEeecCCCCCceEEEeccc--hhhccccccCCceEE
Confidence 3666777654 2222222 2235788999999766665523234455566555 233432221 12223
Q ss_pred cccccCcceeEEeecCCCCEEEEEEEE-----CCeEEEEEE
Q 006979 351 LWVFGINSYEIIQSHGEKNLIACSYRQ-----NGRSYLGIL 386 (623)
Q Consensus 351 ~w~~~~~~~~~l~~s~~~~~l~~~~~~-----~g~~~L~~~ 386 (623)
.|.+ ||.+++.+... +....||.+
T Consensus 361 eW~P------------dGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 361 EWSP------------DGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred EEcC------------CCcEEEEEeccccEEecCCeEEEEe
Confidence 4543 88877765431 333455555
No 310
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=95.96 E-value=0.83 Score=45.09 Aligned_cols=163 Identities=14% Similarity=0.120 Sum_probs=79.2
Q ss_pred EEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE-E
Q 006979 150 FRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI-A 227 (623)
Q Consensus 150 ~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i-d 227 (623)
+...++ ..+.+...+..|.++++++. ....+... ...-.+.+.||+|++|+...... + -.+|-+ =
T Consensus 193 iGiA~~~k~imsas~dt~i~lw~lkGq--~L~~idtn----q~~n~~aavSP~GRFia~~gFTp-D------VkVwE~~f 259 (420)
T KOG2096|consen 193 IGIAGNAKYIMSASLDTKICLWDLKGQ--LLQSIDTN----QSSNYDAAVSPDGRFIAVSGFTP-D------VKVWEPIF 259 (420)
T ss_pred EeecCCceEEEEecCCCcEEEEecCCc--eeeeeccc----cccccceeeCCCCcEEEEecCCC-C------ceEEEEEe
Confidence 333344 45555666778999999843 32333221 22334678999999988754322 1 122211 1
Q ss_pred cCCCCcccceeccc--CC-CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCC-CC--Cccc
Q 006979 228 LNGQNIQEPKVLVS--GS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF-DP--TIVE 301 (623)
Q Consensus 228 l~~g~~~~~~~l~~--~~-~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~-~~--~~~~ 301 (623)
...|+.+++.++.. |. .-+...+||||.++++-++-|. .-+||-.|+.=... ....++... .+ +--.
T Consensus 260 ~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG------~wriwdtdVrY~~~-qDpk~Lk~g~~pl~aag~ 332 (420)
T KOG2096|consen 260 TKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG------KWRIWDTDVRYEAG-QDPKILKEGSAPLHAAGS 332 (420)
T ss_pred ccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCC------cEEEeeccceEecC-CCchHhhcCCcchhhcCC
Confidence 12344333333322 22 2244567999999998877443 23455444321100 011111111 00 0002
Q ss_pred cCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCe
Q 006979 302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNE 336 (623)
Q Consensus 302 ~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~ 336 (623)
...+...+|.|+.+.++.. ..|-.+..++|+
T Consensus 333 ~p~RL~lsP~g~~lA~s~g----s~l~~~~se~g~ 363 (420)
T KOG2096|consen 333 EPVRLELSPSGDSLAVSFG----SDLKVFASEDGK 363 (420)
T ss_pred CceEEEeCCCCcEEEeecC----CceEEEEcccCc
Confidence 3346788999995555543 134444444444
No 311
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.95 E-value=1.5 Score=43.20 Aligned_cols=118 Identities=11% Similarity=0.127 Sum_probs=69.5
Q ss_pred ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc--cCCCcccceeeCCCCCEEEEEEecCCCCCC
Q 006979 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV--SGSDFYAFPRMDPRGERMAWIEWHHPNMPW 270 (623)
Q Consensus 193 ~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~--~~~~~~~~p~wSPDG~~la~~~~~~~~~p~ 270 (623)
..+..|+|+.+.|+.+.... ..|+-++.+|.- ++.+. .-.|. ...+|.-+|++++ . ++.
T Consensus 88 vS~LTynp~~rtLFav~n~p--------~~iVElt~~Gdl---irtiPL~g~~Dp-E~Ieyig~n~fvi-~--dER---- 148 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKP--------AAIVELTKEGDL---IRTIPLTGFSDP-ETIEYIGGNQFVI-V--DER---- 148 (316)
T ss_pred ccceeeCCCcceEEEecCCC--------ceEEEEecCCce---EEEecccccCCh-hHeEEecCCEEEE-E--ehh----
Confidence 67899999999988776533 568888887654 44443 22232 2356888887443 2 332
Q ss_pred CceEEEEEEecCCCc-e--eeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEec
Q 006979 271 DKAELWVGYISENGD-V--YKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE 332 (623)
Q Consensus 271 ~~~~L~v~d~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~ 332 (623)
..+|+...++.+.. + ....+-.+............+|+|+.+ +++.-.+ .-..||.++.
T Consensus 149 -~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr--~P~~I~~~~~ 211 (316)
T COG3204 149 -DRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKER--NPIGIFEVTQ 211 (316)
T ss_pred -cceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEcc--CCcEEEEEec
Confidence 34577777776643 1 111111111101114567899999988 6555544 5567887763
No 312
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=95.94 E-value=0.049 Score=50.32 Aligned_cols=97 Identities=18% Similarity=0.050 Sum_probs=64.3
Q ss_pred EEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCce
Q 006979 497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL 576 (623)
Q Consensus 497 liv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv 576 (623)
++|++-|- +.....-...+..|+++|+.|+-+|-+ +-|- ...-......|+.+.+++..++ ...+||
T Consensus 4 ~~v~~SGD--gGw~~~d~~~a~~l~~~G~~VvGvdsl------~Yfw---~~rtP~~~a~Dl~~~i~~y~~~--w~~~~v 70 (192)
T PF06057_consen 4 LAVFFSGD--GGWRDLDKQIAEALAKQGVPVVGVDSL------RYFW---SERTPEQTAADLARIIRHYRAR--WGRKRV 70 (192)
T ss_pred EEEEEeCC--CCchhhhHHHHHHHHHCCCeEEEechH------HHHh---hhCCHHHHHHHHHHHHHHHHHH--hCCceE
Confidence 45555443 223322235788999999999999932 1111 2233345578899999887776 235899
Q ss_pred EEEEcChHHHHHHHHh-cCC----CceeEEEeccc
Q 006979 577 CITGGSAGGYTTLAAL-AFR----DTFKAGASLYG 606 (623)
Q Consensus 577 ~i~G~S~GG~~~~~~~-~~~----~~f~a~v~~~g 606 (623)
.++|+|+|+=+.-.+. +.| +.++.++.+.|
T Consensus 71 vLiGYSFGADvlP~~~nrLp~~~r~~v~~v~Ll~p 105 (192)
T PF06057_consen 71 VLIGYSFGADVLPFIYNRLPAALRARVAQVVLLSP 105 (192)
T ss_pred EEEeecCCchhHHHHHhhCCHHHHhheeEEEEecc
Confidence 9999999998887777 544 35666666665
No 313
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=95.93 E-value=0.42 Score=45.53 Aligned_cols=144 Identities=9% Similarity=0.003 Sum_probs=86.1
Q ss_pred CEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc
Q 006979 155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (623)
Q Consensus 155 d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~ 234 (623)
|.-+.+...++.+.++|..++ ...+.|-. ...+....+|+||+.|...-. ..+-..|..+=.
T Consensus 155 D~~iLSSadd~tVRLWD~rTg-t~v~sL~~-----~s~VtSlEvs~dG~ilTia~g----------ssV~Fwdaksf~-- 216 (334)
T KOG0278|consen 155 DKCILSSADDKTVRLWDHRTG-TEVQSLEF-----NSPVTSLEVSQDGRILTIAYG----------SSVKFWDAKSFG-- 216 (334)
T ss_pred CceEEeeccCCceEEEEeccC-cEEEEEec-----CCCCcceeeccCCCEEEEecC----------ceeEEecccccc--
Confidence 333344456677899999887 34444443 234566779999986654322 456666766532
Q ss_pred cceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEE-cCCCCCccccCcCceeCCCCc
Q 006979 235 EPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV-AGFDPTIVESPTEPKWSSKGE 313 (623)
Q Consensus 235 ~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ws~DG~ 313 (623)
+..-..-+-.+...+.+|+-. + |+...+ ...+|.+|..++.. .... .+.. ..+.-++|+|||.
T Consensus 217 -~lKs~k~P~nV~SASL~P~k~-~-fVaGge------d~~~~kfDy~TgeE---i~~~nkgh~----gpVhcVrFSPdGE 280 (334)
T KOG0278|consen 217 -LLKSYKMPCNVESASLHPKKE-F-FVAGGE------DFKVYKFDYNTGEE---IGSYNKGHF----GPVHCVRFSPDGE 280 (334)
T ss_pred -ceeeccCccccccccccCCCc-e-EEecCc------ceEEEEEeccCCce---eeecccCCC----CceEEEEECCCCc
Confidence 111112223345567899863 4 444232 34589999998843 2222 3333 4566789999997
Q ss_pred EEEEEeCCCCeeeEEEEecC
Q 006979 314 LFFVTDRKNGFWNLHKWIES 333 (623)
Q Consensus 314 l~~~~~~~~g~~~L~~~d~~ 333 (623)
+|..... +|.-+||...+.
T Consensus 281 ~yAsGSE-DGTirlWQt~~~ 299 (334)
T KOG0278|consen 281 LYASGSE-DGTIRLWQTTPG 299 (334)
T ss_pred eeeccCC-CceEEEEEecCC
Confidence 6655444 788899987653
No 314
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.85 E-value=1.3 Score=43.60 Aligned_cols=211 Identities=12% Similarity=0.178 Sum_probs=108.0
Q ss_pred CCHHHHhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeC-CE
Q 006979 79 LTADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG-DT 156 (623)
Q Consensus 79 ~t~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~-d~ 156 (623)
|.++.+.+....++++.|+| ...+|-+-..|. .|+.+... |+.....|-..-.. -..+...+ +.
T Consensus 76 i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~-----~iVElt~~--GdlirtiPL~g~~D-------pE~Ieyig~n~ 141 (316)
T COG3204 76 IDAKPILGETANVSSLTYNPDTRTLFAVTNKPA-----AIVELTKE--GDLIRTIPLTGFSD-------PETIEYIGGNQ 141 (316)
T ss_pred EeccccccccccccceeeCCCcceEEEecCCCc-----eEEEEecC--CceEEEecccccCC-------hhHeEEecCCE
Confidence 34444555556689999999 788888775554 47777765 45544444321000 01122222 24
Q ss_pred EEEEeCCCCcEEEEeCCCCCCCc-----eecCCC-CCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 006979 157 VIFSNYKDQRLYKHSIDSKDSSP-----LPITPD-YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (623)
Q Consensus 157 l~f~~~~~~~l~~~d~~~g~~~~-----~~Lt~~-~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~ 230 (623)
.+.+++++++||.+.++.+ ... .+++-+ ......-+...+|+|..++++++.|.++ ..||.++...
T Consensus 142 fvi~dER~~~l~~~~vd~~-t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P-------~~I~~~~~~~ 213 (316)
T COG3204 142 FVIVDERDRALYLFTVDAD-TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP-------IGIFEVTQSP 213 (316)
T ss_pred EEEEehhcceEEEEEEcCC-ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCC-------cEEEEEecCC
Confidence 5556667777777666532 111 122222 1111234667899999999999888654 5688887433
Q ss_pred CCcccceeccc--CCCc----ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCcc---c
Q 006979 231 QNIQEPKVLVS--GSDF----YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV---E 301 (623)
Q Consensus 231 g~~~~~~~l~~--~~~~----~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~---~ 301 (623)
........... ..++ .++..+.+.-..|...+ +++. .|..+|.++. .++...+..+.. .-. .
T Consensus 214 ~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS-~ESr------~l~Evd~~G~-~~~~lsL~~g~~-gL~~dip 284 (316)
T COG3204 214 SSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLS-DESR------RLLEVDLSGE-VIELLSLTKGNH-GLSSDIP 284 (316)
T ss_pred cccccccccCcccccceEeeccccceecCCCCcEEEEe-cCCc------eEEEEecCCC-eeeeEEeccCCC-CCcccCC
Confidence 21100000111 1111 34556776666677676 5543 2555555543 111222222211 000 1
Q ss_pred cCcCceeCCCCcEEEEEeC
Q 006979 302 SPTEPKWSSKGELFFVTDR 320 (623)
Q Consensus 302 ~~~~~~ws~DG~l~~~~~~ 320 (623)
....++-.++|.||.++..
T Consensus 285 qaEGiamDd~g~lYIvSEP 303 (316)
T COG3204 285 QAEGIAMDDDGNLYIVSEP 303 (316)
T ss_pred CcceeEECCCCCEEEEecC
Confidence 1234566677778888876
No 315
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=95.84 E-value=0.12 Score=52.43 Aligned_cols=213 Identities=11% Similarity=0.051 Sum_probs=119.6
Q ss_pred CCCCC-CcCCHHHHhcc-CCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCC--CccceeeeecCC
Q 006979 72 YGSWK-SPLTADVVSGA-SKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKE--YAVRTTAQEYGG 147 (623)
Q Consensus 72 ~g~w~-s~~t~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~--~~~r~~~~~~g~ 147 (623)
|-.|. ..+..|.+..+ +.-++.+.|+. +..|-+... .+|-.-+|..... -.+.+... ..+| .
T Consensus 120 FtLWNg~~fnFEtilQaHDs~Vr~m~ws~-~g~wmiSgD--~gG~iKyWqpnmn----nVk~~~ahh~eaIR-------d 185 (464)
T KOG0284|consen 120 FTLWNGTSFNFETILQAHDSPVRTMKWSH-NGTWMISGD--KGGMIKYWQPNMN----NVKIIQAHHAEAIR-------D 185 (464)
T ss_pred EEEecCceeeHHHHhhhhcccceeEEEcc-CCCEEEEcC--CCceEEecccchh----hhHHhhHhhhhhhh-------e
Confidence 33443 33567777665 44468889984 444555533 2455555544322 11122110 0122 2
Q ss_pred ceEEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 006979 148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (623)
Q Consensus 148 ~~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~id 227 (623)
.+|.+ .|..+.+...|+.|-++|..-. .+.++|... ...+....|+|.-..|+-...| +-+-.+|
T Consensus 186 lafSp-nDskF~t~SdDg~ikiWdf~~~-kee~vL~GH----gwdVksvdWHP~kgLiasgskD---------nlVKlWD 250 (464)
T KOG0284|consen 186 LAFSP-NDSKFLTCSDDGTIKIWDFRMP-KEERVLRGH----GWDVKSVDWHPTKGLIASGSKD---------NLVKLWD 250 (464)
T ss_pred eccCC-CCceeEEecCCCeEEEEeccCC-chhheeccC----CCCcceeccCCccceeEEccCC---------ceeEeec
Confidence 33443 3455666667888888887644 356677543 4556667899976544433332 3456679
Q ss_pred cCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCce
Q 006979 228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 307 (623)
Q Consensus 228 l~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (623)
..+|.- +-.|......+....|+|+|.+|+-.+.|. .+-++|+..-. +.....+.. -.+....
T Consensus 251 prSg~c--l~tlh~HKntVl~~~f~~n~N~Llt~skD~--------~~kv~DiR~mk---El~~~r~Hk----kdv~~~~ 313 (464)
T KOG0284|consen 251 PRSGSC--LATLHGHKNTVLAVKFNPNGNWLLTGSKDQ--------SCKVFDIRTMK---ELFTYRGHK----KDVTSLT 313 (464)
T ss_pred CCCcch--hhhhhhccceEEEEEEcCCCCeeEEccCCc--------eEEEEehhHhH---HHHHhhcch----hhheeec
Confidence 888751 222333344566788999999998776444 37788887432 233334433 3456788
Q ss_pred eCCCCc-EEEEEeCCCCeeeEEEEe
Q 006979 308 WSSKGE-LFFVTDRKNGFWNLHKWI 331 (623)
Q Consensus 308 ws~DG~-l~~~~~~~~g~~~L~~~d 331 (623)
|.|=.. |+..... +|.-..|.++
T Consensus 314 WhP~~~~lftsgg~-Dgsvvh~~v~ 337 (464)
T KOG0284|consen 314 WHPLNESLFTSGGS-DGSVVHWVVG 337 (464)
T ss_pred cccccccceeeccC-CCceEEEecc
Confidence 999766 5544433 4544444443
No 316
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=95.83 E-value=0.016 Score=55.92 Aligned_cols=76 Identities=18% Similarity=0.205 Sum_probs=49.2
Q ss_pred CCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cC----CCceeEEEeccc
Q 006979 532 YGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AF----RDTFKAGASLYG 606 (623)
Q Consensus 532 ~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~----~~~f~a~v~~~g 606 (623)
|||+......|.+...-.+.. ...-...|++|+.+.-.-.+++|.+.|||.||.+|.+++ .. .+++..+.++.|
T Consensus 43 FRGTd~t~~~W~ed~~~~~~~-~~~~q~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDg 121 (224)
T PF11187_consen 43 FRGTDDTLVDWKEDFNMSFQD-ETPQQKSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDG 121 (224)
T ss_pred EECCCCchhhHHHHHHhhcCC-CCHHHHHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeC
Confidence 566655555566554433331 233446777777653222245799999999999999988 32 457888888877
Q ss_pred CC
Q 006979 607 VS 608 (623)
Q Consensus 607 ~~ 608 (623)
+-
T Consensus 122 PG 123 (224)
T PF11187_consen 122 PG 123 (224)
T ss_pred CC
Confidence 63
No 317
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=95.80 E-value=0.021 Score=38.18 Aligned_cols=28 Identities=7% Similarity=-0.030 Sum_probs=19.7
Q ss_pred ecCCCCCCCCeeecceeeCCCCCEEEEEEecc
Q 006979 181 PITPDYGEPLVSYADGIFDPRFNRYVTVREDR 212 (623)
Q Consensus 181 ~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~ 212 (623)
+++.. ......+.|||||++|+|++...
T Consensus 3 ~~t~~----~~~~~~p~~SpDGk~i~f~s~~~ 30 (39)
T PF07676_consen 3 QLTNS----PGDDGSPAWSPDGKYIYFTSNRN 30 (39)
T ss_dssp EES-S----SSSEEEEEE-TTSSEEEEEEECT
T ss_pred CcccC----CccccCEEEecCCCEEEEEecCC
Confidence 45554 34556799999999999998755
No 318
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.76 E-value=1.3 Score=44.59 Aligned_cols=246 Identities=9% Similarity=-0.039 Sum_probs=127.5
Q ss_pred EeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 006979 152 IFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (623)
Q Consensus 152 ~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~ 230 (623)
..++ .+.++..+++.|+++|..+| .-.+-|... .....|..++..|+.++-...|- .+.+.|.++
T Consensus 116 ~hp~~~~v~~as~d~tikv~D~~tg-~~e~~LrGH----t~sv~di~~~a~Gk~l~tcSsDl---------~~~LWd~~~ 181 (406)
T KOG0295|consen 116 FHPSEALVVSASEDATIKVFDTETG-ELERSLRGH----TDSVFDISFDASGKYLATCSSDL---------SAKLWDFDT 181 (406)
T ss_pred eccCceEEEEecCCceEEEEEccch-hhhhhhhcc----ccceeEEEEecCccEEEecCCcc---------chhheeHHH
Confidence 3455 57777777888999999887 222333321 22377899999998776554432 134445544
Q ss_pred CCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCC
Q 006979 231 QNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS 310 (623)
Q Consensus 231 g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~ 310 (623)
-. +..+.+......+..+.+-|-|.+|+-...|+ .|...+++++- -...+.+.. +.+..++-..
T Consensus 182 ~~-~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~--------tik~We~~tg~---cv~t~~~h~----ewvr~v~v~~ 245 (406)
T KOG0295|consen 182 FF-RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDN--------TIKAWECDTGY---CVKTFPGHS----EWVRMVRVNQ 245 (406)
T ss_pred HH-HHHHHhcCcccceeeEEEEecCCeeeeccccc--------ceeEEecccce---eEEeccCch----HhEEEEEecC
Confidence 21 11233344444567788899998887655443 26777888772 344555555 3344556678
Q ss_pred CCcEEEEEeCCCCeeeEEEEecCCCeEEEEe-ecccccccccccccCc--ceeEEeecCCCCEEEEEEEECCeEEEEEEe
Q 006979 311 KGELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGIN--SYEIIQSHGEKNLIACSYRQNGRSYLGILD 387 (623)
Q Consensus 311 DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~-~~~~~~~~~~w~~~~~--~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d 387 (623)
||.|+..... +..-++|.+. +++-+.+. ..+..+--..|.+... +...-..+.++..+.....+++.-+++ |
T Consensus 246 DGti~As~s~-dqtl~vW~~~--t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~w--d 320 (406)
T KOG0295|consen 246 DGTIIASCSN-DQTLRVWVVA--TKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIW--D 320 (406)
T ss_pred CeeEEEecCC-CceEEEEEec--cchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEE--e
Confidence 8865443333 3445666553 33111111 0011111112222111 000000011445677777788877776 4
Q ss_pred CCCCce-eecccCCcceEee-eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979 388 DFGHSL-SLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (623)
Q Consensus 388 ~~~~~~-~~lt~~~~~v~~~-~~~~~~~~~~~~s~~~~~~ly~~~l~~~~ 435 (623)
..++.. -.|-....+|.++ ...+++.++..++.. .|-..|+..++
T Consensus 321 v~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDk---tlrvwdl~~~~ 367 (406)
T KOG0295|consen 321 VSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDK---TLRVWDLKNLQ 367 (406)
T ss_pred ccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCC---cEEEEEeccce
Confidence 445533 2343434456655 444555556555432 34445555553
No 319
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.70 E-value=0.53 Score=51.52 Aligned_cols=214 Identities=13% Similarity=0.079 Sum_probs=104.8
Q ss_pred CCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE---EEcCC
Q 006979 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA---IALNG 230 (623)
Q Consensus 154 ~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~---idl~~ 230 (623)
+|..++.....|.|-++|+.+. .....+... ..-..+.+.+||++..+-...|+. -.+|- ++-..
T Consensus 423 gd~~Iv~G~k~Gel~vfdlaS~-~l~Eti~AH----dgaIWsi~~~pD~~g~vT~saDkt-------VkfWdf~l~~~~~ 490 (888)
T KOG0306|consen 423 GDRYIVLGTKNGELQVFDLASA-SLVETIRAH----DGAIWSISLSPDNKGFVTGSADKT-------VKFWDFKLVVSVP 490 (888)
T ss_pred CCceEEEeccCCceEEEEeehh-hhhhhhhcc----ccceeeeeecCCCCceEEecCCcE-------EEEEeEEEEeccC
Confidence 4445555666777888888764 122222211 233556788999998877766542 12221 11122
Q ss_pred CCccc------ceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCc
Q 006979 231 QNIQE------PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT 304 (623)
Q Consensus 231 g~~~~------~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (623)
|.... .++|.-. +-+...+.||||++||..--| +...+|.+| +- ....-+-|.. .-+.
T Consensus 491 gt~~k~lsl~~~rtLel~-ddvL~v~~Spdgk~LaVsLLd------nTVkVyflD--tl---KFflsLYGHk----LPV~ 554 (888)
T KOG0306|consen 491 GTQKKVLSLKHTRTLELE-DDVLCVSVSPDGKLLAVSLLD------NTVKVYFLD--TL---KFFLSLYGHK----LPVL 554 (888)
T ss_pred cccceeeeeccceEEecc-ccEEEEEEcCCCcEEEEEecc------CeEEEEEec--ce---eeeeeecccc----ccee
Confidence 22100 1222212 223446799999999866533 244455544 32 1222333433 3345
Q ss_pred CceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEE
Q 006979 305 EPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 384 (623)
Q Consensus 305 ~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~ 384 (623)
...-|||++++..... +.+-.+|=+|-.. --+-+...+.. .....|+ ...+++|+..+++.-.-
T Consensus 555 smDIS~DSklivTgSA-DKnVKiWGLdFGD-CHKS~fAHdDS---------vm~V~F~----P~~~~FFt~gKD~kvKq- 618 (888)
T KOG0306|consen 555 SMDISPDSKLIVTGSA-DKNVKIWGLDFGD-CHKSFFAHDDS---------VMSVQFL----PKTHLFFTCGKDGKVKQ- 618 (888)
T ss_pred EEeccCCcCeEEeccC-CCceEEeccccch-hhhhhhcccCc---------eeEEEEc----ccceeEEEecCcceEEe-
Confidence 6677899996666544 3445566444311 11222211111 1234555 45678888877665443
Q ss_pred EEeCCC-CceeecccCCcceEee--eecCCE
Q 006979 385 ILDDFG-HSLSLLDIPFTDIDNI--TLGNDC 412 (623)
Q Consensus 385 ~~d~~~-~~~~~lt~~~~~v~~~--~~~~~~ 412 (623)
+|-+. ..++.|......+.-+ .++|+.
T Consensus 619 -WDg~kFe~iq~L~~H~~ev~cLav~~~G~~ 648 (888)
T KOG0306|consen 619 -WDGEKFEEIQKLDGHHSEVWCLAVSPNGSF 648 (888)
T ss_pred -echhhhhhheeeccchheeeeeEEcCCCCe
Confidence 33221 2233444433334433 555553
No 320
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=95.70 E-value=0.38 Score=50.19 Aligned_cols=92 Identities=18% Similarity=0.308 Sum_probs=56.2
Q ss_pred eEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCc-eeeeEEEcCCCCCc
Q 006979 221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGFDPTI 299 (623)
Q Consensus 221 ~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~-~~~~~~~~~~~~~~ 299 (623)
...+++|.++.. ..++-.+.+-.+-.++||||..||.-+.|. -||++.++.++. +.......+
T Consensus 428 G~w~V~d~e~~~---lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~--------~iyiy~Vs~~g~~y~r~~k~~g----- 491 (626)
T KOG2106|consen 428 GRWFVLDTETQD---LVTIHTDNEQLSVVRYSPDGAFLAVGSHDN--------HIYIYRVSANGRKYSRVGKCSG----- 491 (626)
T ss_pred ceEEEEecccce---eEEEEecCCceEEEEEcCCCCEEEEecCCC--------eEEEEEECCCCcEEEEeeeecC-----
Confidence 678889988765 444433455556678999999999776332 277777766653 111112222
Q ss_pred cccCcCceeCCCCcEEEEEeCCCCeeeEEEEec
Q 006979 300 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIE 332 (623)
Q Consensus 300 ~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~ 332 (623)
..+....||+|++ |++++. -++.-|| +.+
T Consensus 492 -s~ithLDwS~Ds~-~~~~~S-~d~eiLy-W~~ 520 (626)
T KOG2106|consen 492 -SPITHLDWSSDSQ-FLVSNS-GDYEILY-WKP 520 (626)
T ss_pred -ceeEEeeecCCCc-eEEecc-CceEEEE-Ecc
Confidence 2456789999996 445555 3444444 444
No 321
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=95.62 E-value=0.022 Score=59.52 Aligned_cols=57 Identities=14% Similarity=0.053 Sum_probs=37.9
Q ss_pred ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccC-CCcccceeeCCCCCEEEEE
Q 006979 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG-SDFYAFPRMDPRGERMAWI 261 (623)
Q Consensus 193 ~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~-~~~~~~p~wSPDG~~la~~ 261 (623)
.+.++|||||++|++|..| .-|.++|.++.+ +.-+... ..-..-.+||||||+|+--
T Consensus 293 in~f~FS~DG~~LA~VSqD---------GfLRvF~fdt~e---Llg~mkSYFGGLLCvcWSPDGKyIvtG 350 (636)
T KOG2394|consen 293 INEFAFSPDGKYLATVSQD---------GFLRIFDFDTQE---LLGVMKSYFGGLLCVCWSPDGKYIVTG 350 (636)
T ss_pred ccceeEcCCCceEEEEecC---------ceEEEeeccHHH---HHHHHHhhccceEEEEEcCCccEEEec
Confidence 3578899999999999886 457777877654 2222111 0111235799999998744
No 322
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=95.61 E-value=0.24 Score=51.94 Aligned_cols=85 Identities=14% Similarity=0.177 Sum_probs=51.5
Q ss_pred CCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceeccc
Q 006979 162 YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS 241 (623)
Q Consensus 162 ~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~ 241 (623)
..||++.+++-.+. ..+.+... ..-....+|+|||..|+-+-|| +.+-.... +|-. ...+..
T Consensus 82 s~DGkf~il~k~~r--VE~sv~AH----~~A~~~gRW~~dGtgLlt~GED---------G~iKiWSr-sGML--RStl~Q 143 (737)
T KOG1524|consen 82 SNDGRFVILNKSAR--VERSISAH----AAAISSGRWSPDGAGLLTAGED---------GVIKIWSR-SGML--RSTVVQ 143 (737)
T ss_pred cCCceEEEecccch--hhhhhhhh----hhhhhhcccCCCCceeeeecCC---------ceEEEEec-cchH--HHHHhh
Confidence 36787888765432 22333321 1234457899999999887665 33444443 3431 223444
Q ss_pred CCCcccceeeCCCCCEEEEEEec
Q 006979 242 GSDFYAFPRMDPRGERMAWIEWH 264 (623)
Q Consensus 242 ~~~~~~~p~wSPDG~~la~~~~~ 264 (623)
....+...+|.||...+.|...+
T Consensus 144 ~~~~v~c~~W~p~S~~vl~c~g~ 166 (737)
T KOG1524|consen 144 NEESIRCARWAPNSNSIVFCQGG 166 (737)
T ss_pred cCceeEEEEECCCCCceEEecCC
Confidence 44555567899999999999644
No 323
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=95.60 E-value=1.8 Score=42.52 Aligned_cols=150 Identities=12% Similarity=0.066 Sum_probs=89.1
Q ss_pred EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (623)
Q Consensus 156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~ 235 (623)
.++.+...|+++-++|.... ...++-+. ......+.|..++..+...--| ++|-+.|+..+..
T Consensus 146 ~lv~SgsdD~t~kl~D~R~k--~~~~t~~~----kyqltAv~f~d~s~qv~sggId---------n~ikvWd~r~~d~-- 208 (338)
T KOG0265|consen 146 QLVCSGSDDGTLKLWDIRKK--EAIKTFEN----KYQLTAVGFKDTSDQVISGGID---------NDIKVWDLRKNDG-- 208 (338)
T ss_pred eEEEecCCCceEEEEeeccc--chhhcccc----ceeEEEEEecccccceeecccc---------CceeeeccccCcc--
Confidence 57778888888999998765 33333322 3455667788888776653322 5577778865541
Q ss_pred ceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceee-eEEEcCCCCCccccCcCceeCCCCc-
Q 006979 236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK-RVCVAGFDPTIVESPTEPKWSSKGE- 313 (623)
Q Consensus 236 ~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ws~DG~- 313 (623)
.-.+....|.+.+...||+|.+|.=.+++. .|.+.|+..-..-.. ..+..+..-......-.-.|+|+++
T Consensus 209 ~~~lsGh~DtIt~lsls~~gs~llsnsMd~--------tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~ 280 (338)
T KOG0265|consen 209 LYTLSGHADTITGLSLSRYGSFLLSNSMDN--------TVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTK 280 (338)
T ss_pred eEEeecccCceeeEEeccCCCccccccccc--------eEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCc
Confidence 344555668888899999999887555443 256666554322011 2233333211123445678999987
Q ss_pred EEEEEeCCCCeeeEEEEecCC
Q 006979 314 LFFVTDRKNGFWNLHKWIESN 334 (623)
Q Consensus 314 l~~~~~~~~g~~~L~~~d~~~ 334 (623)
+-+.+.. ..+|.+|..+
T Consensus 281 i~ags~d----r~vyvwd~~~ 297 (338)
T KOG0265|consen 281 ITAGSAD----RFVYVWDTTS 297 (338)
T ss_pred ccccccc----ceEEEeeccc
Confidence 4443322 3577777544
No 324
>PRK04940 hypothetical protein; Provisional
Probab=95.56 E-value=0.044 Score=50.40 Aligned_cols=36 Identities=19% Similarity=0.142 Sum_probs=27.3
Q ss_pred CceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHH
Q 006979 574 KRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVI 612 (623)
Q Consensus 574 ~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~ 612 (623)
++++|+|.|+|||.+.+++ .+. .+| |.+.|.+....
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~~a-VLiNPAv~P~~ 96 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--IRQ-VIFNPNLFPEE 96 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--CCE-EEECCCCChHH
Confidence 4699999999999999999 554 344 66667665544
No 325
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=95.53 E-value=0.11 Score=50.02 Aligned_cols=97 Identities=19% Similarity=0.162 Sum_probs=64.7
Q ss_pred EEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC--cCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccch
Q 006979 477 AYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG--ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVD 554 (623)
Q Consensus 477 ~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~--~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~ 554 (623)
.|+..|+.+ -.||.+-||......+ .|+...+.++++||+|++.=|.-+-.+..-=. ..
T Consensus 8 ~wvl~P~~P----------~gvihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~tfDH~~~A~---------~~ 68 (250)
T PF07082_consen 8 SWVLIPPRP----------KGVIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVVTFDHQAIAR---------EV 68 (250)
T ss_pred cEEEeCCCC----------CEEEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCCCCcHHHHHH---------HH
Confidence 366667542 2577777886555555 45678888999999999998875333222111 12
Q ss_pred HHHHHHHHHHHHhCCCCCCC--ceEEEEcChHHHHHHHHh
Q 006979 555 VNDCCSCATFLVGSGKADEK--RLCITGGSAGGYTTLAAL 592 (623)
Q Consensus 555 ~~D~~~~~~~l~~~~~~d~~--rv~i~G~S~GG~~~~~~~ 592 (623)
.+....+++.|.+++..++. .+.=+|||+|.-+-+.+.
T Consensus 69 ~~~f~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~ 108 (250)
T PF07082_consen 69 WERFERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIG 108 (250)
T ss_pred HHHHHHHHHHHHHhcCCCcccCCeeeeecccchHHHHHHh
Confidence 34455677777776555443 577799999999888876
No 326
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=95.45 E-value=0.1 Score=54.67 Aligned_cols=72 Identities=10% Similarity=0.100 Sum_probs=46.0
Q ss_pred CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCC
Q 006979 243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN 322 (623)
Q Consensus 243 ~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~ 322 (623)
.+-....+|||||++||.++.|. -|.+++.++.. ++.... .+.+...=..|||||+++.+.-. +
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDG--------fLRvF~fdt~e------Llg~mk-SYFGGLLCvcWSPDGKyIvtGGE-D 353 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDG--------FLRIFDFDTQE------LLGVMK-SYFGGLLCVCWSPDGKYIVTGGE-D 353 (636)
T ss_pred cccccceeEcCCCceEEEEecCc--------eEEEeeccHHH------HHHHHH-hhccceEEEEEcCCccEEEecCC-c
Confidence 33456678999999999997443 48888887642 111111 11134456799999996666554 5
Q ss_pred CeeeEEEE
Q 006979 323 GFWNLHKW 330 (623)
Q Consensus 323 g~~~L~~~ 330 (623)
+--.+|.+
T Consensus 354 DLVtVwSf 361 (636)
T KOG2394|consen 354 DLVTVWSF 361 (636)
T ss_pred ceEEEEEe
Confidence 66667765
No 327
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.44 E-value=2 Score=41.64 Aligned_cols=191 Identities=14% Similarity=-0.025 Sum_probs=92.7
Q ss_pred eCCEEEEEeCCCCcEEEEeCCCCCCCce-ecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 006979 153 FGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ 231 (623)
Q Consensus 153 s~d~l~f~~~~~~~l~~~d~~~g~~~~~-~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g 231 (623)
.++.+++. ..++.|+.+|..+| +.. ..... ......+ ..++..+++...+ +.|+.+|..+|
T Consensus 35 ~~~~v~~~-~~~~~l~~~d~~tG--~~~W~~~~~----~~~~~~~--~~~~~~v~v~~~~---------~~l~~~d~~tG 96 (238)
T PF13360_consen 35 DGGRVYVA-SGDGNLYALDAKTG--KVLWRFDLP----GPISGAP--VVDGGRVYVGTSD---------GSLYALDAKTG 96 (238)
T ss_dssp ETTEEEEE-ETTSEEEEEETTTS--EEEEEEECS----SCGGSGE--EEETTEEEEEETT---------SEEEEEETTTS
T ss_pred eCCEEEEE-cCCCEEEEEECCCC--CEEEEeecc----cccccee--eecccccccccce---------eeeEecccCCc
Confidence 44455554 46777999998877 321 11111 1111122 2244556555432 47999998888
Q ss_pred Ccccceeccc--CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccc-------c
Q 006979 232 NIQEPKVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE-------S 302 (623)
Q Consensus 232 ~~~~~~~l~~--~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~-------~ 302 (623)
+......... .......+....+|..+++... ...|+.+|+.++. ..+......+.... .
T Consensus 97 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~g~l~~~d~~tG~---~~w~~~~~~~~~~~~~~~~~~~ 165 (238)
T PF13360_consen 97 KVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS--------SGKLVALDPKTGK---LLWKYPVGEPRGSSPISSFSDI 165 (238)
T ss_dssp CEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET--------CSEEEEEETTTTE---EEEEEESSTT-SS--EEEETTE
T ss_pred ceeeeeccccccccccccccCceEecCEEEEEec--------cCcEEEEecCCCc---EEEEeecCCCCCCcceeeeccc
Confidence 7422111111 1122233344445777766542 3458999988773 22222221101000 0
Q ss_pred CcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEE
Q 006979 303 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY 382 (623)
Q Consensus 303 ~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~ 382 (623)
...+.. .+| .+|+... .+. +..+|..+++.. ......... .. +. .+++.+|+.. .+ .+
T Consensus 166 ~~~~~~-~~~-~v~~~~~-~g~--~~~~d~~tg~~~-w~~~~~~~~---------~~-~~---~~~~~l~~~~-~~--~~ 223 (238)
T PF13360_consen 166 NGSPVI-SDG-RVYVSSG-DGR--VVAVDLATGEKL-WSKPISGIY---------SL-PS---VDGGTLYVTS-SD--GR 223 (238)
T ss_dssp EEEEEC-CTT-EEEEECC-TSS--EEEEETTTTEEE-EEECSS-EC---------EC-EE---CCCTEEEEEE-TT--TE
T ss_pred ccceEE-ECC-EEEEEcC-CCe--EEEEECCCCCEE-EEecCCCcc---------CC-ce---eeCCEEEEEe-CC--CE
Confidence 122222 245 4444443 232 666688888733 211111110 00 11 1677777766 33 57
Q ss_pred EEEEeCCCCcee
Q 006979 383 LGILDDFGHSLS 394 (623)
Q Consensus 383 L~~~d~~~~~~~ 394 (623)
|+.+|+.+|+..
T Consensus 224 l~~~d~~tG~~~ 235 (238)
T PF13360_consen 224 LYALDLKTGKVV 235 (238)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEECCCCCEE
Confidence 889999988753
No 328
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=95.38 E-value=0.74 Score=46.73 Aligned_cols=159 Identities=14% Similarity=0.097 Sum_probs=93.2
Q ss_pred eEEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCC---CCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPD---YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (623)
Q Consensus 149 ~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~---~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~ 225 (623)
.|.+-+|.++-+...|..|-++....+ ...+.|+.. ...-.-|++-..|+|--.-+++...-. +.+.+
T Consensus 88 ~w~PfnD~vIASgSeD~~v~vW~IPe~-~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D--------n~v~i 158 (472)
T KOG0303|consen 88 DWCPFNDCVIASGSEDTKVMVWQIPEN-GLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD--------NTVSI 158 (472)
T ss_pred ccCccCCceeecCCCCceEEEEECCCc-ccccCcccceEEEeecceeEEEEeecccchhhHhhccCC--------ceEEE
Confidence 466667777777667766666665432 133344421 001134666777888766666543321 67888
Q ss_pred EEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcC
Q 006979 226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE 305 (623)
Q Consensus 226 idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (623)
.++++|+. ...|. ..+.+....|+-||.+|+-...|. .|.++|...+..+.+...-.| .....
T Consensus 159 Wnv~tgea--li~l~-hpd~i~S~sfn~dGs~l~TtckDK--------kvRv~dpr~~~~v~e~~~heG------~k~~R 221 (472)
T KOG0303|consen 159 WNVGTGEA--LITLD-HPDMVYSMSFNRDGSLLCTTCKDK--------KVRVIDPRRGTVVSEGVAHEG------AKPAR 221 (472)
T ss_pred EeccCCce--eeecC-CCCeEEEEEeccCCceeeeecccc--------eeEEEcCCCCcEeeecccccC------CCcce
Confidence 89999862 33344 556667789999999888766443 378888776633222211122 34467
Q ss_pred ceeCCCCcEEEEEeC-CCCeeeEEEEecCC
Q 006979 306 PKWSSKGELFFVTDR-KNGFWNLHKWIESN 334 (623)
Q Consensus 306 ~~ws~DG~l~~~~~~-~~g~~~L~~~d~~~ 334 (623)
..|..+|+ ++.+.. .-...++-++|+..
T Consensus 222 aifl~~g~-i~tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 222 AIFLASGK-IFTTGFSRMSERQIALWDPNN 250 (472)
T ss_pred eEEeccCc-eeeeccccccccceeccCccc
Confidence 88999997 444322 12234555566543
No 329
>PRK13614 lipoprotein LpqB; Provisional
Probab=95.36 E-value=3 Score=46.05 Aligned_cols=167 Identities=17% Similarity=0.215 Sum_probs=95.0
Q ss_pred ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCee
Q 006979 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFW 325 (623)
Q Consensus 246 ~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~ 325 (623)
...+..|+||+.+|++.. +...|++...... ...++.+ ..+..|.|+++| .+|...+ ....
T Consensus 345 ~~s~avS~~g~~~A~~~~-------~~~~l~~~~~g~~----~~~~~~g------~~Lt~PS~d~~g-~vWtv~~-g~~~ 405 (573)
T PRK13614 345 PASPAESPVSQTVAFLNG-------SRTTLYTVSPGQP----ARALTSG------STLTRPSFSPQD-WVWTAGP-GGNG 405 (573)
T ss_pred ccceeecCCCceEEEecC-------CCcEEEEecCCCc----ceeeecC------CCccCCcccCCC-CEEEeeC-CCCc
Confidence 446789999999999842 2346777665321 3444544 346799999998 5666655 2333
Q ss_pred eEEEEecCC-CeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEE--Ee-CCCCceeecccCC-
Q 006979 326 NLHKWIESN-NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI--LD-DFGHSLSLLDIPF- 400 (623)
Q Consensus 326 ~L~~~d~~~-~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~--~d-~~~~~~~~lt~~~- 400 (623)
+|.++..++ ++..... .+.....|..+ ....-+..|.||-++.+..+.+|..+|++ +- ...|..+.|+.+.
T Consensus 406 ~vv~~~~~g~~~~~~~~---~~~v~~~~l~g-~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~ 481 (573)
T PRK13614 406 RIVAYRPTGVAEGAQAP---TVTLTADWLAG-RTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPIT 481 (573)
T ss_pred eEEEEecCCCccccccc---ceeecccccCC-CeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCcee
Confidence 666665432 1111100 01112235443 12333334559988888887788755554 32 2345555565432
Q ss_pred ----cceEee-eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979 401 ----TDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (623)
Q Consensus 401 ----~~v~~~-~~~~~~~~~~~~s~~~~~~ly~~~l~~~~ 435 (623)
..+..+ ..+++.+++...........+++.+..+.
T Consensus 482 ~~~~~~~~sl~W~~~~sl~V~~~~~~~~~~~~~v~v~~g~ 521 (573)
T PRK13614 482 LAADSDADTGAWVGDSTVVVTKASATSNVVPELLSVDAGQ 521 (573)
T ss_pred cccCCCcceeEEcCCCEEEEEeccCCCcceEEEEEeCCCC
Confidence 223344 45677777777666666678888886665
No 330
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=95.33 E-value=0.047 Score=59.97 Aligned_cols=84 Identities=11% Similarity=0.022 Sum_probs=56.1
Q ss_pred CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCC
Q 006979 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD 244 (623)
Q Consensus 165 ~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~ 244 (623)
-.|.++|..+. .-.|.+-.. ..+.+|+.|||||++|+-..-| +.|.++|+-++.. .-...-..
T Consensus 556 f~I~vvD~~t~-kvvR~f~gh----~nritd~~FS~DgrWlisasmD---------~tIr~wDlpt~~l---ID~~~vd~ 618 (910)
T KOG1539|consen 556 FSIRVVDVVTR-KVVREFWGH----GNRITDMTFSPDGRWLISASMD---------STIRTWDLPTGTL---IDGLLVDS 618 (910)
T ss_pred eeEEEEEchhh-hhhHHhhcc----ccceeeeEeCCCCcEEEEeecC---------CcEEEEeccCcce---eeeEecCC
Confidence 34777877654 123444322 5788999999999998876554 6799999988862 21111122
Q ss_pred cccceeeCCCCCEEEEEEecC
Q 006979 245 FYAFPRMDPRGERMAWIEWHH 265 (623)
Q Consensus 245 ~~~~p~wSPDG~~la~~~~~~ 265 (623)
.....++||+|.+||-+..++
T Consensus 619 ~~~sls~SPngD~LAT~Hvd~ 639 (910)
T KOG1539|consen 619 PCTSLSFSPNGDFLATVHVDQ 639 (910)
T ss_pred cceeeEECCCCCEEEEEEecC
Confidence 234567999999999876554
No 331
>PRK13613 lipoprotein LpqB; Provisional
Probab=95.31 E-value=2.8 Score=46.65 Aligned_cols=166 Identities=10% Similarity=0.162 Sum_probs=90.1
Q ss_pred eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc-c-cceecccCCCcccceeeCCCCCEEEEEEecCCCCC
Q 006979 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-Q-EPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP 269 (623)
Q Consensus 192 ~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~-~-~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p 269 (623)
....+..|++|+.++++..+. ..|++-++.++.. . ..+.+..+.. ...|.|.++| +| |+. +...
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~--------~~l~vg~~~~~~~~~~~~~~~~~~~~-Lt~PS~d~~g-~v-Wtv-d~~~-- 429 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADG--------DSVYVGSLTPGASIGVHSWGVTADGR-LTSPSWDGRG-DL-WVV-DRDP-- 429 (599)
T ss_pred CccceEEcCCCceEEEEcCCC--------cEEEEeccCCCCccccccceeeccCc-ccCCcCcCCC-CE-EEe-cCCC--
Confidence 345678999999999985422 5677766544431 0 0112333333 5679999999 54 454 3211
Q ss_pred CCceE-EEEEEecCCCceeeeEEEc-CCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEE--EEec-CCCeEEEEe--
Q 006979 270 WDKAE-LWVGYISENGDVYKRVCVA-GFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLH--KWIE-SNNEVLAIY-- 341 (623)
Q Consensus 270 ~~~~~-L~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~--~~d~-~~~~~~~l~-- 341 (623)
...+ |.+..- ++.. ..+.. ... . ..+..++-|+||. ++++.+. .+..+|+ .+-- ..+. +.|+
T Consensus 430 -~~~~vl~v~~~-~G~~---~~V~~~~l~-g--~~I~~lrvSrDG~RvAvv~~~-~g~~~v~va~V~R~~~G~-~~l~~~ 499 (599)
T PRK13613 430 -ADPRLLWLLQG-DGEP---VEVRTPELD-G--HRVVAVRVARDGVRVALIVEK-DGRRSLQIGRIVRDAKAV-VSVEEF 499 (599)
T ss_pred -CCceEEEEEcC-CCcE---EEeeccccC-C--CEeEEEEECCCccEEEEEEec-CCCcEEEEEEEEeCCCCc-EEeecc
Confidence 1223 444442 3321 11222 111 1 2578899999998 7777665 3444444 3332 2343 3333
Q ss_pred ----ecccccccccccccCcceeEEeecCCCCEEEEEE-EECCeEEEEEEeCCCCcee
Q 006979 342 ----SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSY-RQNGRSYLGILDDFGHSLS 394 (623)
Q Consensus 342 ----~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~-~~~g~~~L~~~d~~~~~~~ 394 (623)
.+..++....|. ++..|++.. ...+...++++++++....
T Consensus 500 ~~l~~~l~~v~~~~W~-------------~~~sL~Vlg~~~~~~~~v~~v~vdG~~~~ 544 (599)
T PRK13613 500 RSLAPELEDVTDMSWA-------------GDSQLVVLGREEGGVQQARYVQVDGSTPP 544 (599)
T ss_pred EEeccCCCccceeEEc-------------CCCEEEEEeccCCCCcceEEEecCCcCcc
Confidence 222233444555 556666643 3455777999999876554
No 332
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.30 E-value=2.1 Score=47.10 Aligned_cols=156 Identities=10% Similarity=0.062 Sum_probs=90.2
Q ss_pred CCceEEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979 146 GGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (623)
Q Consensus 146 g~~~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~ 225 (623)
...++.++.|.++......+.|-+++.++. ...+.++.+ . .-.-.|-|.+++|+.-+.+ +.|-+
T Consensus 375 dVRsl~vS~d~~~~~Sga~~SikiWn~~t~-kciRTi~~~-----y-~l~~~Fvpgd~~Iv~G~k~---------Gel~v 438 (888)
T KOG0306|consen 375 DVRSLCVSSDSILLASGAGESIKIWNRDTL-KCIRTITCG-----Y-ILASKFVPGDRYIVLGTKN---------GELQV 438 (888)
T ss_pred heeEEEeecCceeeeecCCCcEEEEEccCc-ceeEEeccc-----c-EEEEEecCCCceEEEeccC---------CceEE
Confidence 345788888855554444556777777765 467777764 1 1223578888877765442 66888
Q ss_pred EEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEec--CCCc------eeeeEEEcCCCC
Q 006979 226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS--ENGD------VYKRVCVAGFDP 297 (623)
Q Consensus 226 idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~--~~~~------~~~~~~~~~~~~ 297 (623)
+|+.+... +..+....+..-..+.+||++..+-.+.|+. ..+|-..+- .+++ +...+.+. .+
T Consensus 439 fdlaS~~l--~Eti~AHdgaIWsi~~~pD~~g~vT~saDkt------VkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~- 508 (888)
T KOG0306|consen 439 FDLASASL--VETIRAHDGAIWSISLSPDNKGFVTGSADKT------VKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LE- 508 (888)
T ss_pred EEeehhhh--hhhhhccccceeeeeecCCCCceEEecCCcE------EEEEeEEEEeccCcccceeeeeccceEEe-cc-
Confidence 99988752 2222212223344678999998876664542 233322221 1121 01111121 12
Q ss_pred CccccCcCceeCCCCcEEEEEeCCCCeeeEEEEe
Q 006979 298 TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWI 331 (623)
Q Consensus 298 ~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d 331 (623)
..+.-...||||+++.++-- +..-.+|.+|
T Consensus 509 ---ddvL~v~~Spdgk~LaVsLL-dnTVkVyflD 538 (888)
T KOG0306|consen 509 ---DDVLCVSVSPDGKLLAVSLL-DNTVKVYFLD 538 (888)
T ss_pred ---ccEEEEEEcCCCcEEEEEec-cCeEEEEEec
Confidence 24556789999997777765 5666777765
No 333
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.26 E-value=0.042 Score=54.76 Aligned_cols=145 Identities=10% Similarity=0.071 Sum_probs=86.8
Q ss_pred EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (623)
Q Consensus 156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~ 235 (623)
.|+-+...++.|+++|+..+ ...+.+.- ..+-+..+|+|.+ ..|+..+.. ..||.+|...-..
T Consensus 201 sILas~~sDrsIvLyD~R~~-~Pl~KVi~-----~mRTN~IswnPea--fnF~~a~ED-------~nlY~~DmR~l~~-- 263 (433)
T KOG0268|consen 201 SILASCASDRSIVLYDLRQA-SPLKKVIL-----TMRTNTICWNPEA--FNFVAANED-------HNLYTYDMRNLSR-- 263 (433)
T ss_pred hheeeeccCCceEEEecccC-Cccceeee-----eccccceecCccc--cceeecccc-------ccceehhhhhhcc--
Confidence 35555545667999999865 33344444 3677889999944 344443221 5699998754220
Q ss_pred ceecccCC-CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcE
Q 006979 236 PKVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 314 (623)
Q Consensus 236 ~~~l~~~~-~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l 314 (623)
+..+..+. .-+....|||-|+-++-.+.|.+ |.++....+. .+.+.-... . +.+..+.||.|.+.
T Consensus 264 p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks--------IRIf~~~~~~---SRdiYhtkR-M--q~V~~Vk~S~Dsky 329 (433)
T KOG0268|consen 264 PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS--------IRIFPVNHGH---SRDIYHTKR-M--QHVFCVKYSMDSKY 329 (433)
T ss_pred cchhhcccceeEEEeccCCCcchhccccccce--------EEEeecCCCc---chhhhhHhh-h--heeeEEEEeccccE
Confidence 22222222 12345679999998876665543 7777777662 122211111 1 56678899999984
Q ss_pred EEEEeCCCCeeeEEEEec
Q 006979 315 FFVTDRKNGFWNLHKWIE 332 (623)
Q Consensus 315 ~~~~~~~~g~~~L~~~d~ 332 (623)
++...+ ++.-+||+...
T Consensus 330 i~SGSd-d~nvRlWka~A 346 (433)
T KOG0268|consen 330 IISGSD-DGNVRLWKAKA 346 (433)
T ss_pred EEecCC-Ccceeeeecch
Confidence 444333 58889998654
No 334
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=95.25 E-value=0.87 Score=49.29 Aligned_cols=167 Identities=10% Similarity=-0.048 Sum_probs=97.0
Q ss_pred eeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCc---ccceeeCCCCCEEEEEEecCCC
Q 006979 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF---YAFPRMDPRGERMAWIEWHHPN 267 (623)
Q Consensus 191 ~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~---~~~p~wSPDG~~la~~~~~~~~ 267 (623)
......+.||||++|++.+-.. ..||++..+. .+ .++.+.....+ .....|+-|+.++++++.+
T Consensus 383 ~nIs~~aiSPdg~~Ia~st~~~--------~~iy~L~~~~-~v-k~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~--- 449 (691)
T KOG2048|consen 383 ENISCAAISPDGNLIAISTVSR--------TKIYRLQPDP-NV-KVINVDDVPLALLDASAISFTIDKNKLFLVSKN--- 449 (691)
T ss_pred cceeeeccCCCCCEEEEeeccc--------eEEEEeccCc-ce-eEEEeccchhhhccceeeEEEecCceEEEEecc---
Confidence 3445567999999999876532 6788888766 31 12222222221 2345689999999888733
Q ss_pred CCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEe-eccc
Q 006979 268 MPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDA 345 (623)
Q Consensus 268 ~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~-~~~~ 345 (623)
..+|..+++++... +.+..-.......++....-|+||+ +...+ ....|+.+++.+.+.+.+. ..+.
T Consensus 450 ----~~~le~~el~~ps~---kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~----t~g~I~v~nl~~~~~~~l~~rln~ 518 (691)
T KOG2048|consen 450 ----IFSLEEFELETPSF---KELKSIQSQAKCPSISRLVVSSDGNYIAAIS----TRGQIFVYNLETLESHLLKVRLNI 518 (691)
T ss_pred ----cceeEEEEecCcch---hhhhccccccCCCcceeEEEcCCCCEEEEEe----ccceEEEEEcccceeecchhccCc
Confidence 44578888776521 2221111111225788899999998 44443 2357899999998877765 2233
Q ss_pred ccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceee
Q 006979 346 EFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSL 395 (623)
Q Consensus 346 ~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~ 395 (623)
.++.....+ +.-+.+++.. ...++|-+|++..++.+
T Consensus 519 ~vTa~~~~~-----------~~~~~lvvat---s~nQv~efdi~~~~l~~ 554 (691)
T KOG2048|consen 519 DVTAAAFSP-----------FVRNRLVVAT---SNNQVFEFDIEARNLTR 554 (691)
T ss_pred ceeeeeccc-----------cccCcEEEEe---cCCeEEEEecchhhhhh
Confidence 333222211 0334455443 23568888886555443
No 335
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=95.24 E-value=3.8 Score=43.62 Aligned_cols=218 Identities=10% Similarity=0.032 Sum_probs=112.0
Q ss_pred CCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCC--EEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc
Q 006979 163 KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFN--RYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV 240 (623)
Q Consensus 163 ~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~--~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~ 240 (623)
..+.++.+++..-.....+|.. .+.+++.+||.+. +|++..-.....| ..-+||.+...+.. ..+.
T Consensus 144 v~nev~f~~~~~f~~~~~kl~~------~~i~~f~lSpgp~~~~vAvyvPe~kGaP--a~vri~~~~~~~~~----~~~a 211 (566)
T KOG2315|consen 144 VSNEVQFYDLGSFKTIQHKLSV------SGITMLSLSPGPEPPFVAVYVPEKKGAP--ASVRIYKYPEEGQH----QPVA 211 (566)
T ss_pred hcceEEEEecCCccceeeeeec------cceeeEEecCCCCCceEEEEccCCCCCC--cEEEEecccccccc----chhh
Confidence 3456788877642112233332 3567888888643 3333222112221 34567777633221 1121
Q ss_pred c----CCCcccceeeCCCCCEEEEEEe---cCCCCC-CCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCC
Q 006979 241 S----GSDFYAFPRMDPRGERMAWIEW---HHPNMP-WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 312 (623)
Q Consensus 241 ~----~~~~~~~p~wSPDG~~la~~~~---~~~~~p-~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG 312 (623)
. -.|. .+..|.+-|.-|..+.. |..+.. +....||++++++. ...+-.... +-+.++.|+++|
T Consensus 212 ~ksFFkadk-vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~----s~~V~L~k~----GPVhdv~W~~s~ 282 (566)
T KOG2315|consen 212 NKSFFKADK-VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE----SVSVPLLKE----GPVHDVTWSPSG 282 (566)
T ss_pred hccccccce-eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc----eEEEecCCC----CCceEEEECCCC
Confidence 1 1222 34679999998877653 443332 34678999999843 222222223 567899999999
Q ss_pred c-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCC
Q 006979 313 E-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH 391 (623)
Q Consensus 313 ~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~ 391 (623)
+ +.++... =-..+-.+|+...-.-.+..+.. +...|. |.|+.+++..-.+-...+-++|..+
T Consensus 283 ~EF~VvyGf--MPAkvtifnlr~~~v~df~egpR-----------N~~~fn---p~g~ii~lAGFGNL~G~mEvwDv~n- 345 (566)
T KOG2315|consen 283 REFAVVYGF--MPAKVTIFNLRGKPVFDFPEGPR-----------NTAFFN---PHGNIILLAGFGNLPGDMEVWDVPN- 345 (566)
T ss_pred CEEEEEEec--ccceEEEEcCCCCEeEeCCCCCc-----------cceEEC---CCCCEEEEeecCCCCCceEEEeccc-
Confidence 8 5555422 11245556665432222211110 122232 2677777766544445566667655
Q ss_pred ceeeccc---CCcceEeeeecCCEEEEEEec
Q 006979 392 SLSLLDI---PFTDIDNITLGNDCLFVEGAS 419 (623)
Q Consensus 392 ~~~~lt~---~~~~v~~~~~~~~~~~~~~~s 419 (623)
.+.|.. ....+..+++||..++....+
T Consensus 346 -~K~i~~~~a~~tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 346 -RKLIAKFKAANTTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred -hhhccccccCCceEEEEcCCCcEEEEEecc
Confidence 233333 233344557777766654433
No 336
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=2 Score=46.74 Aligned_cols=187 Identities=11% Similarity=0.034 Sum_probs=94.8
Q ss_pred CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCc------------------eeeeEEEcCCCCCccc--
Q 006979 242 GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD------------------VYKRVCVAGFDPTIVE-- 301 (623)
Q Consensus 242 ~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~------------------~~~~~~~~~~~~~~~~-- 301 (623)
+-+.....-|-|||+++...-.|+++ ...+|.+++.+..-. +....+.+.....|..
T Consensus 356 ~~EYI~Ragwtpdgkyvwvq~LdR~Q---~~l~iilip~~~f~~~~dn~~~~~~~~~~v~~~~~~~viyee~sd~winiH 432 (867)
T KOG2281|consen 356 DVEYIARAGWTPDGKYVWVQVLDRSQ---QRLQIILIPPTLFIPKEDNLQLRTDLNMGVPDDVSPEVIYEEPSDGWINIH 432 (867)
T ss_pred cceeeeeccccCCCcEEEEEEecCCc---ceeEEEEECHHHcCCccccHhhhhhhhhcCCcCCCcceEEecCCCceEEhh
Confidence 33455566799999987666667764 455666666543210 0111122222213321
Q ss_pred cCcCceeCC--CCc--EEEEEeCCCCeeeEEEEecCC---CeEEEE------------eecccccccccccccCcceeEE
Q 006979 302 SPTEPKWSS--KGE--LFFVTDRKNGFWNLHKWIESN---NEVLAI------------YSLDAEFSRPLWVFGINSYEII 362 (623)
Q Consensus 302 ~~~~~~ws~--DG~--l~~~~~~~~g~~~L~~~d~~~---~~~~~l------------~~~~~~~~~~~w~~~~~~~~~l 362 (623)
.+..+-|-. .+. ++|.+.. .++.+||.+.... |....+ ..++....+-.|....+.=.+.
T Consensus 433 d~f~~~~~~~~e~~~~fi~asE~-~~Frhly~its~lk~ng~~~s~~~~p~~~d~~c~i~ee~altSgeweVl~r~Gi~V 511 (867)
T KOG2281|consen 433 DIFHPLPQSTHEASYPFIWASEE-TGFRHLYLITSLLKPNGYCLSLGSAPLDQDFKCRIKEEIALTSGEWEVLARHGIWV 511 (867)
T ss_pred hcccccccCCccceeeEEEeccc-ccceEEEEEEeecccCCCcccccCCcccccccCcchhheeecccceeehhhcCeee
Confidence 123334433 233 5566666 7788888764321 100000 0111122233444322221222
Q ss_pred eecCCCCEEEEEEEECC--eEEEEEEeCC-CCceeecccCCcce-EeeeecCCEEEEEEecCCCCCeEEEEEcCCC
Q 006979 363 QSHGEKNLIACSYRQNG--RSYLGILDDF-GHSLSLLDIPFTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDH 434 (623)
Q Consensus 363 ~~s~~~~~l~~~~~~~g--~~~L~~~d~~-~~~~~~lt~~~~~v-~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~ 434 (623)
. ...+.+||...+++ ..|||+.... .|+..+||.+.... ..++.+-+.++...++-..|+.+-.+.+...
T Consensus 512 d--E~~~LVYf~gt~d~PlE~hLyvvsye~~g~~~rlt~~g~sh~~~l~~~~d~fv~~~~sv~sP~cv~~y~ls~~ 585 (867)
T KOG2281|consen 512 D--EVRKLVYFVGTKDTPLEHHLYVVSYENPGEIARLTEPGYSHSCELDQQCDHFVSYYSSVGSPPCVSLYSLSWP 585 (867)
T ss_pred c--ccceEEEEEccCCCCceeeEEEEEEecCCceeeccCCCcccchhhhhhhhhHhhhhhcCCCCceEEEEeccCC
Confidence 0 02345778777776 6789999987 78999998764322 2334444445555566666766555555443
No 337
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.16 E-value=1.1 Score=47.13 Aligned_cols=127 Identities=17% Similarity=0.106 Sum_probs=66.1
Q ss_pred cEEEEeCCCCCCC---ceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE-EcCCC-Ccc-cceec
Q 006979 166 RLYKHSIDSKDSS---PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI-ALNGQ-NIQ-EPKVL 239 (623)
Q Consensus 166 ~l~~~d~~~g~~~---~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i-dl~~g-~~~-~~~~l 239 (623)
+|++++...++.. .+.+... ......+.+.++| |++ ... ..|+++ |.++. ... ..+.|
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~~----l~~p~Gi~~~~~G--lyV-~~~---------~~i~~~~d~~gdg~ad~~~~~l 111 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAEE----LSMVTGLAVAVGG--VYV-ATP---------PDILFLRDKDGDDKADGEREVL 111 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeecC----CCCccceeEecCC--EEE-eCC---------CeEEEEeCCCCCCCCCCccEEE
Confidence 6777765332112 2333332 1223457788888 443 321 357766 44331 111 13334
Q ss_pred ccC--------CCcccceeeCCCCCEEEEEEecCCCC----C--------CCceEEEEEEecCCCceeeeEEEcCCCCCc
Q 006979 240 VSG--------SDFYAFPRMDPRGERMAWIEWHHPNM----P--------WDKAELWVGYISENGDVYKRVCVAGFDPTI 299 (623)
Q Consensus 240 ~~~--------~~~~~~p~wSPDG~~la~~~~~~~~~----p--------~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~ 299 (623)
..+ ......+.|.|||+ |++...+..+. | .....+++++.+++ ...++...-
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~----~~e~~a~G~--- 183 (367)
T TIGR02604 112 LSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG----KLRVVAHGF--- 183 (367)
T ss_pred EEccCCCCCcccccccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEecCCC----eEEEEecCc---
Confidence 322 12245688999996 87765321110 0 11346888887765 233444332
Q ss_pred cccCcCceeCCCCcEEEE
Q 006979 300 VESPTEPKWSSKGELFFV 317 (623)
Q Consensus 300 ~~~~~~~~ws~DG~l~~~ 317 (623)
.......|+++|++++.
T Consensus 184 -rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 184 -QNPYGHSVDSWGDVFFC 200 (367)
T ss_pred -CCCccceECCCCCEEEE
Confidence 45568899999987654
No 338
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.13 E-value=0.19 Score=57.35 Aligned_cols=219 Identities=12% Similarity=0.128 Sum_probs=111.1
Q ss_pred CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecC--CceEEEeCCEEEEEeCCC
Q 006979 88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYG--GGAFRIFGDTVIFSNYKD 164 (623)
Q Consensus 88 ~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g--~~~~~~s~d~l~f~~~~~ 164 (623)
..++..+.|.+ +..--=+=..+-|+|...||....-..+....++.. ...|.-. +-.|....+.++-+...+
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~-----~~~h~G~V~gLDfN~~q~nlLASGa~~ 138 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLAT-----KSKHTGPVLGLDFNPFQGNLLASGADD 138 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhh-----hcccCCceeeeeccccCCceeeccCCC
Confidence 34556777766 443111112234678877775443100122222211 1112111 233444444567777778
Q ss_pred CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCC-
Q 006979 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS- 243 (623)
Q Consensus 165 ~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~- 243 (623)
|.|+++|++. ..++.+.+.-.........+|...-.+|++... ..+...+.|+...+ .+..+....
T Consensus 139 geI~iWDlnn---~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s--------~sg~~~iWDlr~~~--pii~ls~~~~ 205 (1049)
T KOG0307|consen 139 GEILIWDLNK---PETPFTPGSQAPPSEIKCLSWNRKVSHILASGS--------PSGRAVIWDLRKKK--PIIKLSDTPG 205 (1049)
T ss_pred CcEEEeccCC---cCCCCCCCCCCCcccceEeccchhhhHHhhccC--------CCCCceeccccCCC--cccccccCCC
Confidence 8999999974 234444421011112222334443334443222 22456677887653 133333222
Q ss_pred -CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCC
Q 006979 244 -DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRK 321 (623)
Q Consensus 244 -~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~ 321 (623)
.......|.||+..-+++..++.+ ...|-+.|+.-... ..+++.+.. ..+-...|.+.+. +++.+-.
T Consensus 206 ~~~~S~l~WhP~~aTql~~As~dd~----~PviqlWDlR~ass--P~k~~~~H~----~GilslsWc~~D~~lllSsgk- 274 (1049)
T KOG0307|consen 206 RMHCSVLAWHPDHATQLLVASGDDS----APVIQLWDLRFASS--PLKILEGHQ----RGILSLSWCPQDPRLLLSSGK- 274 (1049)
T ss_pred ccceeeeeeCCCCceeeeeecCCCC----CceeEeecccccCC--chhhhcccc----cceeeeccCCCCchhhhcccC-
Confidence 235567899998777667655543 33355556543221 344445555 5677889999875 6555543
Q ss_pred CCeeeEEEEecCCCeE
Q 006979 322 NGFWNLHKWIESNNEV 337 (623)
Q Consensus 322 ~g~~~L~~~d~~~~~~ 337 (623)
..+++.+++.+++.
T Consensus 275 --D~~ii~wN~~tgEv 288 (1049)
T KOG0307|consen 275 --DNRIICWNPNTGEV 288 (1049)
T ss_pred --CCCeeEecCCCceE
Confidence 23677788888763
No 339
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=95.05 E-value=8.5 Score=45.46 Aligned_cols=61 Identities=8% Similarity=0.001 Sum_probs=39.0
Q ss_pred eeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE----EcCCCCcccceecccCCCcccceeeCCCCCEEEEEEe
Q 006979 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI----ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEW 263 (623)
Q Consensus 191 ~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i----dl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~ 263 (623)
...-++.+-+|...++++.++ ++|..+ +.++.. ...+..-..-....+||||+..|+++..
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~---------Gdi~~~~~~~~~~~~~---~E~VG~vd~GI~a~~WSPD~Ella~vT~ 140 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALAS---------GDIILVREDPDPDEDE---IEIVGSVDSGILAASWSPDEELLALVTG 140 (928)
T ss_pred CcEEEEEeccCCCcEEEEECC---------ceEEEEEccCCCCCce---eEEEEEEcCcEEEEEECCCcCEEEEEeC
Confidence 345556677787777777654 567877 555544 3333222222445789999999998873
No 340
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.02 E-value=1.1 Score=43.08 Aligned_cols=181 Identities=9% Similarity=0.060 Sum_probs=96.9
Q ss_pred CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCC
Q 006979 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS 243 (623)
Q Consensus 164 ~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~ 243 (623)
.|+|++++++.+ ...+.+..- +-.....|.+||+.-.-++++..-. +.|-+.|+.-.. .+++.+.+..
T Consensus 37 ~G~L~ile~~~~-~gi~e~~s~--d~~D~LfdV~Wse~~e~~~~~a~GD--------GSLrl~d~~~~s-~Pi~~~kEH~ 104 (311)
T KOG0277|consen 37 NGRLFILEVTDP-KGIQECQSY--DTEDGLFDVAWSENHENQVIAASGD--------GSLRLFDLTMPS-KPIHKFKEHK 104 (311)
T ss_pred CceEEEEecCCC-CCeEEEEee--ecccceeEeeecCCCcceEEEEecC--------ceEEEeccCCCC-cchhHHHhhh
Confidence 467888888532 122222111 0012345789999877777665432 557777743221 1122222222
Q ss_pred CcccceeeCCCCCEEEEEE-ecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCC
Q 006979 244 DFYAFPRMDPRGERMAWIE-WHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN 322 (623)
Q Consensus 244 ~~~~~p~wSPDG~~la~~~-~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~ 322 (623)
.-+....|++--+++..++ ||. ...||..+... ....+.+.. .-+.+..|+|--.-+|.+-..+
T Consensus 105 ~EV~Svdwn~~~r~~~ltsSWD~------TiKLW~~~r~~-----Sv~Tf~gh~----~~Iy~a~~sp~~~nlfas~Sgd 169 (311)
T KOG0277|consen 105 REVYSVDWNTVRRRIFLTSSWDG------TIKLWDPNRPN-----SVQTFNGHN----SCIYQAAFSPHIPNLFASASGD 169 (311)
T ss_pred hheEEeccccccceeEEeeccCC------ceEeecCCCCc-----ceEeecCCc----cEEEEEecCCCCCCeEEEccCC
Confidence 2344467988777766554 342 33455444322 234456655 5667899999755333444436
Q ss_pred CeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEE
Q 006979 323 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 384 (623)
Q Consensus 323 g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~ 384 (623)
+.-+||-++.. |+...+.....++-.-.|.. -+..++++...++.-+.|
T Consensus 170 ~~l~lwdvr~~-gk~~~i~ah~~Eil~cdw~k------------y~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 170 GTLRLWDVRSP-GKFMSIEAHNSEILCCDWSK------------YNHNVLATGGVDNLVRGW 218 (311)
T ss_pred ceEEEEEecCC-CceeEEEeccceeEeecccc------------cCCcEEEecCCCceEEEE
Confidence 77788877654 44444544444444456653 345577766555544443
No 341
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=94.99 E-value=5 Score=47.35 Aligned_cols=97 Identities=9% Similarity=-0.018 Sum_probs=52.1
Q ss_pred ceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeE
Q 006979 248 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNL 327 (623)
Q Consensus 248 ~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L 327 (623)
..+|-.||+++|....+...- ....|.+++-++. -.-..+.- + +--....|-|.|.++...++..+...|
T Consensus 214 ~ISWRGDG~yFAVss~~~~~~--~~R~iRVy~ReG~-----L~stSE~v-~--gLe~~l~WrPsG~lIA~~q~~~~~~~V 283 (928)
T PF04762_consen 214 RISWRGDGEYFAVSSVEPETG--SRRVIRVYSREGE-----LQSTSEPV-D--GLEGALSWRPSGNLIASSQRLPDRHDV 283 (928)
T ss_pred EEEECCCCcEEEEEEEEcCCC--ceeEEEEECCCce-----EEeccccC-C--CccCCccCCCCCCEEEEEEEcCCCcEE
Confidence 345999999988776533210 1355677766532 11111111 1 233578999999966666654555666
Q ss_pred EEEecCCCeEEEEe----ecccccccccccc
Q 006979 328 HKWIESNNEVLAIY----SLDAEFSRPLWVF 354 (623)
Q Consensus 328 ~~~d~~~~~~~~l~----~~~~~~~~~~w~~ 354 (623)
..+...+-+-.... +.+..+....|..
T Consensus 284 vFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ 314 (928)
T PF04762_consen 284 VFFERNGLRHGEFTLRFDPEEEKVIELAWNS 314 (928)
T ss_pred EEEecCCcEeeeEecCCCCCCceeeEEEECC
Confidence 66654442222221 2233445556665
No 342
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=94.95 E-value=0.17 Score=40.87 Aligned_cols=77 Identities=14% Similarity=0.078 Sum_probs=49.5
Q ss_pred ceeeCCCCCEEEEEEeccCCC---------CCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecC
Q 006979 195 DGIFDPRFNRYVTVREDRRQD---------ALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHH 265 (623)
Q Consensus 195 d~~~sPdG~~l~~v~~~~~~~---------~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~ 265 (623)
|..+++++..|+|+.....-. ...+.++|+.+|+.+++ .++|..+-.|.++.+.|||++.|++.+..
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~---~~vl~~~L~fpNGVals~d~~~vlv~Et~- 77 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKE---TTVLLDGLYFPNGVALSPDESFVLVAETG- 77 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTE---EEEEEEEESSEEEEEE-TTSSEEEEEEGG-
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCe---EEEehhCCCccCeEEEcCCCCEEEEEecc-
Confidence 456677755666664432111 12356899999999998 78888888898999999999999988743
Q ss_pred CCCCCCceEEEEEEec
Q 006979 266 PNMPWDKAELWVGYIS 281 (623)
Q Consensus 266 ~~~p~~~~~L~v~d~~ 281 (623)
..+|..+-++
T Consensus 78 ------~~Ri~rywl~ 87 (89)
T PF03088_consen 78 ------RYRILRYWLK 87 (89)
T ss_dssp ------GTEEEEEESS
T ss_pred ------CceEEEEEEe
Confidence 3456655544
No 343
>PRK13613 lipoprotein LpqB; Provisional
Probab=94.94 E-value=1.1 Score=49.68 Aligned_cols=163 Identities=15% Similarity=0.116 Sum_probs=87.4
Q ss_pred eEEEeCC--EEEEEeCCCCcEEEEeCCCCCCC----ceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeE
Q 006979 149 AFRIFGD--TVIFSNYKDQRLYKHSIDSKDSS----PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE 222 (623)
Q Consensus 149 ~~~~s~d--~l~f~~~~~~~l~~~d~~~g~~~----~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~ 222 (623)
+.+++.+ .+++.......||+-.+..+ .. .+.+.. ......|+|+++| +++.+ +..... ...
T Consensus 367 s~avS~~g~~~A~v~~~~~~l~vg~~~~~-~~~~~~~~~~~~-----~~~Lt~PS~d~~g-~vWtv-d~~~~~----~~v 434 (599)
T PRK13613 367 RVAVSRDESRAAGISADGDSVYVGSLTPG-ASIGVHSWGVTA-----DGRLTSPSWDGRG-DLWVV-DRDPAD----PRL 434 (599)
T ss_pred ceEEcCCCceEEEEcCCCcEEEEeccCCC-Cccccccceeec-----cCcccCCcCcCCC-CEEEe-cCCCCC----ceE
Confidence 4445444 56666544445776555433 12 122222 2356779999998 34433 211111 122
Q ss_pred EEEEEcCCCCcccceeccc-C--CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecC--CCc--eeeeEEEcCC
Q 006979 223 IVAIALNGQNIQEPKVLVS-G--SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE--NGD--VYKRVCVAGF 295 (623)
Q Consensus 223 L~~idl~~g~~~~~~~l~~-~--~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~--~~~--~~~~~~~~~~ 295 (623)
|.++.. +|+ ...+.. . ..-+...+.|+||.+++++.... ...+|++.-+.. .+. +...+.+...
T Consensus 435 l~v~~~-~G~---~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~-----g~~~v~va~V~R~~~G~~~l~~~~~l~~~ 505 (599)
T PRK13613 435 LWLLQG-DGE---PVEVRTPELDGHRVVAVRVARDGVRVALIVEKD-----GRRSLQIGRIVRDAKAVVSVEEFRSLAPE 505 (599)
T ss_pred EEEEcC-CCc---EEEeeccccCCCEeEEEEECCCccEEEEEEecC-----CCcEEEEEEEEeCCCCcEEeeccEEeccC
Confidence 444443 454 222211 1 11355678999999999987432 245677665543 332 2222222222
Q ss_pred CCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCe
Q 006979 296 DPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNE 336 (623)
Q Consensus 296 ~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~ 336 (623)
. ..+.+..|..+++|+.+.....+...++.++.++..
T Consensus 506 l----~~v~~~~W~~~~sL~Vlg~~~~~~~~v~~v~vdG~~ 542 (599)
T PRK13613 506 L----EDVTDMSWAGDSQLVVLGREEGGVQQARYVQVDGST 542 (599)
T ss_pred C----CccceeEEcCCCEEEEEeccCCCCcceEEEecCCcC
Confidence 2 346788999999877755432456778888887654
No 344
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.86 E-value=0.056 Score=51.70 Aligned_cols=86 Identities=16% Similarity=0.157 Sum_probs=56.2
Q ss_pred CCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCC-
Q 006979 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK- 570 (623)
Q Consensus 492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~- 570 (623)
+.+.-++.+.|.|..+ ..|+.+...+.. -+.++.+.|+|-+. +.+..-..|+.+.++.|...-.
T Consensus 5 ~~~~~L~cfP~AGGsa---~~fr~W~~~lp~-~iel~avqlPGR~~-----------r~~ep~~~di~~Lad~la~el~~ 69 (244)
T COG3208 5 GARLRLFCFPHAGGSA---SLFRSWSRRLPA-DIELLAVQLPGRGD-----------RFGEPLLTDIESLADELANELLP 69 (244)
T ss_pred CCCceEEEecCCCCCH---HHHHHHHhhCCc-hhheeeecCCCccc-----------ccCCcccccHHHHHHHHHHHhcc
Confidence 4455577778876322 245555554433 58899999998432 1233345677777777766422
Q ss_pred CCC-CceEEEEcChHHHHHHHHh
Q 006979 571 ADE-KRLCITGGSAGGYTTLAAL 592 (623)
Q Consensus 571 ~d~-~rv~i~G~S~GG~~~~~~~ 592 (623)
..+ .-.+++||||||.++.-++
T Consensus 70 ~~~d~P~alfGHSmGa~lAfEvA 92 (244)
T COG3208 70 PLLDAPFALFGHSMGAMLAFEVA 92 (244)
T ss_pred ccCCCCeeecccchhHHHHHHHH
Confidence 222 4799999999999998777
No 345
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=94.85 E-value=0.51 Score=48.99 Aligned_cols=146 Identities=8% Similarity=0.004 Sum_probs=89.6
Q ss_pred CCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 006979 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (623)
Q Consensus 154 ~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~ 233 (623)
...|+.+...|+.|+++++-+. .+.|..-. .-..-+.+..|+++|..++-+.-| ..|-..|+++|.
T Consensus 226 ~~hLlLS~gmD~~vklW~vy~~---~~~lrtf~-gH~k~Vrd~~~s~~g~~fLS~sfD---------~~lKlwDtETG~- 291 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVYDD---RRCLRTFK-GHRKPVRDASFNNCGTSFLSASFD---------RFLKLWDTETGQ- 291 (503)
T ss_pred eeeEEEecCCCceEEEEEEecC---cceehhhh-cchhhhhhhhccccCCeeeeeecc---------eeeeeeccccce-
Confidence 3478888888999999988642 22222110 002235678899999998877665 457788999997
Q ss_pred ccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc
Q 006979 234 QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 313 (623)
Q Consensus 234 ~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~ 313 (623)
+..-........-..+.||+..++++... ..+|..+|+..+.- +-..+ .-.+.+....|-++|+
T Consensus 292 --~~~~f~~~~~~~cvkf~pd~~n~fl~G~s-------d~ki~~wDiRs~kv------vqeYd-~hLg~i~~i~F~~~g~ 355 (503)
T KOG0282|consen 292 --VLSRFHLDKVPTCVKFHPDNQNIFLVGGS-------DKKIRQWDIRSGKV------VQEYD-RHLGAILDITFVDEGR 355 (503)
T ss_pred --EEEEEecCCCceeeecCCCCCcEEEEecC-------CCcEEEEeccchHH------HHHHH-hhhhheeeeEEccCCc
Confidence 43333333333446799999888877643 34588888877631 11111 0014556788889997
Q ss_pred -EEEEEeCCCCeeeEEEEe
Q 006979 314 -LFFVTDRKNGFWNLHKWI 331 (623)
Q Consensus 314 -l~~~~~~~~g~~~L~~~d 331 (623)
++-.++ .+..++|-+.
T Consensus 356 rFissSD--dks~riWe~~ 372 (503)
T KOG0282|consen 356 RFISSSD--DKSVRIWENR 372 (503)
T ss_pred eEeeecc--CccEEEEEcC
Confidence 443344 3566666554
No 346
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=94.84 E-value=4.1 Score=39.48 Aligned_cols=141 Identities=12% Similarity=0.037 Sum_probs=80.6
Q ss_pred eEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCc--e--eeeEEEcCCC
Q 006979 221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD--V--YKRVCVAGFD 296 (623)
Q Consensus 221 ~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~--~--~~~~~~~~~~ 296 (623)
+.+-+.|..+|+ ......-...+-...||++|..+++.. |+ .|- ..+.|.++|+..... . +....+.-.+
T Consensus 74 ~t~kLWDv~tGk---~la~~k~~~~Vk~~~F~~~gn~~l~~t-D~-~mg-~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ 147 (327)
T KOG0643|consen 74 QTAKLWDVETGK---QLATWKTNSPVKRVDFSFGGNLILAST-DK-QMG-YTCFVSVFDIRDDSSDIDSEEPYLKIPTPD 147 (327)
T ss_pred ceeEEEEcCCCc---EEEEeecCCeeEEEeeccCCcEEEEEe-hh-hcC-cceEEEEEEccCChhhhcccCceEEecCCc
Confidence 456667888887 332222222334567999999888776 33 232 356688888764311 0 1122233222
Q ss_pred CCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEE
Q 006979 297 PTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR 376 (623)
Q Consensus 297 ~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~ 376 (623)
-.+....|+|-|+.++..+. +| .|-.+|..+|+.. .....+.. ...+++.+. .++..+++..
T Consensus 148 ----skit~a~Wg~l~~~ii~Ghe-~G--~is~~da~~g~~~--v~s~~~h~-----~~Ind~q~s----~d~T~FiT~s 209 (327)
T KOG0643|consen 148 ----SKITSALWGPLGETIIAGHE-DG--SISIYDARTGKEL--VDSDEEHS-----SKINDLQFS----RDRTYFITGS 209 (327)
T ss_pred ----cceeeeeecccCCEEEEecC-CC--cEEEEEcccCcee--eechhhhc-----ccccccccc----CCcceEEecc
Confidence 35678899999985555554 45 4666787776422 11111111 133455555 5677888888
Q ss_pred ECCeEEEEE
Q 006979 377 QNGRSYLGI 385 (623)
Q Consensus 377 ~~g~~~L~~ 385 (623)
.+....|+-
T Consensus 210 ~Dttakl~D 218 (327)
T KOG0643|consen 210 KDTTAKLVD 218 (327)
T ss_pred cCccceeee
Confidence 888887753
No 347
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.77 E-value=0.43 Score=48.66 Aligned_cols=92 Identities=12% Similarity=-0.017 Sum_probs=52.8
Q ss_pred ceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE-cCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCce
Q 006979 195 DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA-LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 273 (623)
Q Consensus 195 d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~id-l~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~ 273 (623)
-.++++||..++....| ..|.+++ +.-.. +........-+....|||||+.|+++..+
T Consensus 149 ~vaf~~~gs~latgg~d---------g~lRv~~~Ps~~t---~l~e~~~~~eV~DL~FS~dgk~lasig~d--------- 207 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGGTD---------GTLRVWEWPSMLT---ILEEIAHHAEVKDLDFSPDGKFLASIGAD--------- 207 (398)
T ss_pred EEEEcCCCCEeeecccc---------ceEEEEecCcchh---hhhhHhhcCccccceeCCCCcEEEEecCC---------
Confidence 46688888877765443 4566777 32221 11111122234457799999999999744
Q ss_pred EEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCC
Q 006979 274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 312 (623)
Q Consensus 274 ~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG 312 (623)
...+++.+++.. ....++.+.+ +.....+|+.|+
T Consensus 208 ~~~VW~~~~g~~---~a~~t~~~k~--~~~~~cRF~~d~ 241 (398)
T KOG0771|consen 208 SARVWSVNTGAA---LARKTPFSKD--EMFSSCRFSVDN 241 (398)
T ss_pred ceEEEEeccCch---hhhcCCcccc--hhhhhceecccC
Confidence 255667776632 1112222223 566777888877
No 348
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=94.76 E-value=1.6 Score=48.52 Aligned_cols=198 Identities=13% Similarity=0.139 Sum_probs=104.3
Q ss_pred EEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCC-CCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 006979 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPD-YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (623)
Q Consensus 150 ~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~-~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl 228 (623)
|.-....|++++...-.|-+..|.++ +++.+-.. ...| ...+.+--++-++|... ....|-+.-|
T Consensus 1032 fDC~e~mvyWtDv~g~SI~rasL~G~--Ep~ti~n~~L~SP----EGiAVDh~~Rn~ywtDS--------~lD~IevA~L 1097 (1289)
T KOG1214|consen 1032 FDCRERMVYWTDVAGRSISRASLEGA--EPETIVNSGLISP----EGIAVDHIRRNMYWTDS--------VLDKIEVALL 1097 (1289)
T ss_pred cccccceEEEeecCCCccccccccCC--CCceeecccCCCc----cceeeeeccceeeeecc--------ccchhheeec
Confidence 33334467888766656777777755 44433321 0000 11222223344444322 1234555556
Q ss_pred CCCCcccceecccC-CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCce
Q 006979 229 NGQNIQEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 307 (623)
Q Consensus 229 ~~g~~~~~~~l~~~-~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (623)
++.. .+.|... --........|=++.|||..|++. +..|-..++++. +++++...+ - .-.....
T Consensus 1098 dG~~---rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRe-----nPkIets~mDG~----NrRilin~D-i--gLPNGLt 1162 (1289)
T KOG1214|consen 1098 DGSE---RKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRE-----NPKIETSSMDGE----NRRILINTD-I--GLPNGLT 1162 (1289)
T ss_pred CCce---eeEEEeecccCcceEEeecccCceeecccccc-----CCcceeeccCCc----cceEEeecc-c--CCCCCce
Confidence 6654 4445432 211223447788899999999885 445777788876 455555444 1 3445777
Q ss_pred eCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEe
Q 006979 308 WSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 387 (623)
Q Consensus 308 ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d 387 (623)
+.|..+++...|. |..+|-.+.+++...|.+... .. -.|.+.. +++.+|++..++ ..+..++
T Consensus 1163 fdpfs~~LCWvDA--Gt~rleC~~p~g~gRR~i~~~------Lq-----YPF~its---y~~~fY~TDWk~--n~vvsv~ 1224 (1289)
T KOG1214|consen 1163 FDPFSKLLCWVDA--GTKRLECTLPDGTGRRVIQNN------LQ-----YPFSITS---YADHFYHTDWKR--NGVVSVN 1224 (1289)
T ss_pred eCcccceeeEEec--CCcceeEecCCCCcchhhhhc------cc-----Cceeeee---ccccceeecccc--CceEEee
Confidence 8887775544554 666777666655444433311 11 1122222 556688876543 3455566
Q ss_pred CCCCcee
Q 006979 388 DFGHSLS 394 (623)
Q Consensus 388 ~~~~~~~ 394 (623)
..+++.+
T Consensus 1225 ~~~~~~t 1231 (1289)
T KOG1214|consen 1225 KHSGQFT 1231 (1289)
T ss_pred ccccccc
Confidence 6555443
No 349
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.71 E-value=1 Score=44.45 Aligned_cols=106 Identities=15% Similarity=0.118 Sum_probs=67.9
Q ss_pred EEEEEeCCCCcEEEEeCCCCCC-CceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc
Q 006979 156 TVIFSNYKDQRLYKHSIDSKDS-SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (623)
Q Consensus 156 ~l~f~~~~~~~l~~~d~~~g~~-~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~ 234 (623)
.|+|.....|+|-++|+..... .+..+... ....+-.++.-+|..|+-.+... +-|.+.|..+|+.
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH----~s~Iacv~Ln~~Gt~vATaStkG--------TLIRIFdt~~g~~- 216 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPNAPSIINAH----DSDIACVALNLQGTLVATASTKG--------TLIRIFDTEDGTL- 216 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcCCceEEEcc----cCceeEEEEcCCccEEEEeccCc--------EEEEEEEcCCCcE-
Confidence 6889988889999999975301 12223221 22344567888998776655432 4466778887762
Q ss_pred cceecccCCCc--ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCC
Q 006979 235 EPKVLVSGSDF--YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN 283 (623)
Q Consensus 235 ~~~~l~~~~~~--~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~ 283 (623)
+..+-.|.+. ....+||||+++||..+ | +..|++..+...
T Consensus 217 -l~E~RRG~d~A~iy~iaFSp~~s~LavsS-d-------KgTlHiF~l~~~ 258 (346)
T KOG2111|consen 217 -LQELRRGVDRADIYCIAFSPNSSWLAVSS-D-------KGTLHIFSLRDT 258 (346)
T ss_pred -eeeeecCCchheEEEEEeCCCccEEEEEc-C-------CCeEEEEEeecC
Confidence 3334444322 33478999999999776 3 456999888754
No 350
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=94.70 E-value=0.38 Score=49.01 Aligned_cols=139 Identities=9% Similarity=0.038 Sum_probs=83.2
Q ss_pred CCCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC-cCCHHhHHHHcCceEEEEECCCCCC
Q 006979 458 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYWTSRGWAFVDVNYGGST 536 (623)
Q Consensus 458 ~~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~-~~~~~~~~~a~~G~~v~~~d~rGs~ 536 (623)
++.-+.+.+.. ++...- -+|.|... +++.-+||++||-......+ ......+.|.++|+.++.+..+.--
T Consensus 59 lp~~e~~~L~~--~~~~fl-aL~~~~~~------~~~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~ 129 (310)
T PF12048_consen 59 LPADEVQWLQA--GEERFL-ALWRPANS------AKPQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPA 129 (310)
T ss_pred CCHhhcEEeec--CCEEEE-EEEecccC------CCCceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCcc
Confidence 33344455544 455555 45566541 55677999999974443332 3446788899999999998877510
Q ss_pred CC-chhHHH----------------------------hhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHH
Q 006979 537 GY-GREFRE----------------------------RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT 587 (623)
Q Consensus 537 ~~-g~~~~~----------------------------~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~ 587 (623)
.- -..+.. .....+-.....-+.+++.++.+++ ..+|+|+|+..|+++
T Consensus 130 ~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~---~~~ivlIg~G~gA~~ 206 (310)
T PF12048_consen 130 PPASPNRATEAEEVPSAGDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQG---GKNIVLIGHGTGAGW 206 (310)
T ss_pred cccCCccCCCCCCCCCCCCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcC---CceEEEEEeChhHHH
Confidence 00 000000 0000111122344567777887776 346999999999999
Q ss_pred HHHHh-cC-CCceeEEEecccCC
Q 006979 588 TLAAL-AF-RDTFKAGASLYGVS 608 (623)
Q Consensus 588 ~~~~~-~~-~~~f~a~v~~~g~~ 608 (623)
++.++ .. +....+.|.+.+..
T Consensus 207 ~~~~la~~~~~~~daLV~I~a~~ 229 (310)
T PF12048_consen 207 AARYLAEKPPPMPDALVLINAYW 229 (310)
T ss_pred HHHHHhcCCCcccCeEEEEeCCC
Confidence 99888 44 33466777776643
No 351
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=94.69 E-value=4.8 Score=39.62 Aligned_cols=127 Identities=9% Similarity=-0.028 Sum_probs=72.5
Q ss_pred EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (623)
Q Consensus 156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~ 235 (623)
..+++...|.+++.+|..+| ...++.... ....+...-+.-|-.+++..++. .++-+.|.....
T Consensus 103 s~i~S~gtDk~v~~wD~~tG-~~~rk~k~h----~~~vNs~~p~rrg~~lv~SgsdD--------~t~kl~D~R~k~--- 166 (338)
T KOG0265|consen 103 SHILSCGTDKTVRGWDAETG-KRIRKHKGH----TSFVNSLDPSRRGPQLVCSGSDD--------GTLKLWDIRKKE--- 166 (338)
T ss_pred CEEEEecCCceEEEEecccc-eeeehhccc----cceeeecCccccCCeEEEecCCC--------ceEEEEeecccc---
Confidence 67778778888999999988 444554432 22334333334566677766544 567888887654
Q ss_pred ceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc
Q 006979 236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 313 (623)
Q Consensus 236 ~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~ 313 (623)
...+....--.....|.-++..+.--..| .+|-+.|+..+. ..-++.|.. ..+....-+++|.
T Consensus 167 ~~~t~~~kyqltAv~f~d~s~qv~sggId--------n~ikvWd~r~~d---~~~~lsGh~----DtIt~lsls~~gs 229 (338)
T KOG0265|consen 167 AIKTFENKYQLTAVGFKDTSDQVISGGID--------NDIKVWDLRKND---GLYTLSGHA----DTITGLSLSRYGS 229 (338)
T ss_pred hhhccccceeEEEEEecccccceeecccc--------CceeeeccccCc---ceEEeeccc----CceeeEEeccCCC
Confidence 22232222112335677777766433323 225555664442 233455544 3556677788886
No 352
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=94.63 E-value=4.6 Score=42.62 Aligned_cols=126 Identities=11% Similarity=-0.007 Sum_probs=76.5
Q ss_pred ceeeCCCCCEEEEEEeccCCCCCCc--eeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCc
Q 006979 195 DGIFDPRFNRYVTVREDRRQDALNS--TTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 272 (623)
Q Consensus 195 d~~~sPdG~~l~~v~~~~~~~~~~~--~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~ 272 (623)
.+.|.+.|++|++....+....+.. .+.||++++.... .++...-.+.+-...|+|++++.+.+..-.+
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~---i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~p------ 297 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS---IPVEKDLKDPVHDFTWEPLSSRFAVISGYMP------ 297 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc---cceeccccccceeeeecccCCceeEEecccc------
Confidence 3679999999999877664211122 2789999987654 3333222333445679999999998873332
Q ss_pred eEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEE
Q 006979 273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAI 340 (623)
Q Consensus 273 ~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l 340 (623)
..+.+.|+.++ .+-.++.. --..+.|+|.++.+.++..++-+.++..+|+.+. ...+
T Consensus 298 a~~s~~~lr~N----l~~~~Pe~------~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r-f~~~ 354 (561)
T COG5354 298 ASVSVFDLRGN----LRFYFPEQ------KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR-FKVA 354 (561)
T ss_pred cceeecccccc----eEEecCCc------ccccccccCcccEEEEecCCccccceEEeccCCc-eEEE
Confidence 23666777655 22223322 2247789999984444443244567777887554 3334
No 353
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=94.63 E-value=4.9 Score=39.40 Aligned_cols=205 Identities=14% Similarity=0.171 Sum_probs=88.3
Q ss_pred ecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEE
Q 006979 238 VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFV 317 (623)
Q Consensus 238 ~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~ 317 (623)
.|..-.+-.++.+|.||.++|+.+. |++ ..|+.++.++ .+-.+.-+.+.. ....+.+..+|+++..
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~-d~~------~~i~els~~G--~vlr~i~l~g~~-----D~EgI~y~g~~~~vl~ 81 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQ-DEP------GEIYELSLDG--KVLRRIPLDGFG-----DYEGITYLGNGRYVLS 81 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEE-TTT------TEEEEEETT----EEEEEE-SS-S-----SEEEEEE-STTEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEE-CCC------CEEEEEcCCC--CEEEEEeCCCCC-----CceeEEEECCCEEEEE
Confidence 3443333467889999999988776 654 3477777653 322233344422 3346778777754444
Q ss_pred EeCCCCeeeEEEEec--CCCe--EEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeC--CCC
Q 006979 318 TDRKNGFWNLHKWIE--SNNE--VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD--FGH 391 (623)
Q Consensus 318 ~~~~~g~~~L~~~d~--~~~~--~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~--~~~ 391 (623)
..+ .+ .|+.++. .+.. ...+..-. ...+ ..+...+.=+.+++.++.|++.- +.....||.++. ...
T Consensus 82 ~Er-~~--~L~~~~~~~~~~~~~~~~~~~~~--l~~~--~~~N~G~EGla~D~~~~~L~v~k-E~~P~~l~~~~~~~~~~ 153 (248)
T PF06977_consen 82 EER-DQ--RLYIFTIDDDTTSLDRADVQKIS--LGFP--NKGNKGFEGLAYDPKTNRLFVAK-ERKPKRLYEVNGFPGGF 153 (248)
T ss_dssp ETT-TT--EEEEEEE----TT--EEEEEEEE-----S-----SS--EEEEEETTTTEEEEEE-ESSSEEEEEEESTT-SS
T ss_pred EcC-CC--cEEEEEEeccccccchhhceEEe--cccc--cCCCcceEEEEEcCCCCEEEEEe-CCCChhhEEEccccCcc
Confidence 433 33 5665554 2222 11111100 0000 01111222222233677787764 455567888875 222
Q ss_pred ceeec-----cc---CCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcceeeeeEEEeccCCCCccCCCCCCCc
Q 006979 392 SLSLL-----DI---PFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLP 461 (623)
Q Consensus 392 ~~~~l-----t~---~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~ 461 (623)
..... .. ...+++++ ++..+.++++.. ....|..+|.++.-+.. ..+.... ..+ ...+++|
T Consensus 154 ~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~---es~~l~~~d~~G~~~~~----~~L~~g~-~gl-~~~~~Qp 224 (248)
T PF06977_consen 154 DLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSD---ESRLLLELDRQGRVVSS----LSLDRGF-HGL-SKDIPQP 224 (248)
T ss_dssp --EEEE-HHHH-HT--SS---EEEEETTTTEEEEEET---TTTEEEEE-TT--EEEE----EE-STTG-GG--SS---SE
T ss_pred ceeeccccccccccceeccccceEEcCCCCeEEEEEC---CCCeEEEECCCCCEEEE----EEeCCcc-cCc-ccccCCc
Confidence 22211 10 01123444 667778888753 23567888854442221 1222211 011 2567899
Q ss_pred EEEEeecCCCCeEEE
Q 006979 462 ELIEFPTEVPGQKAY 476 (623)
Q Consensus 462 ~~i~~~~~~dg~~i~ 476 (623)
|-|.+.. +| .|+
T Consensus 225 EGIa~d~--~G-~LY 236 (248)
T PF06977_consen 225 EGIAFDP--DG-NLY 236 (248)
T ss_dssp EEEEE-T--T---EE
T ss_pred cEEEECC--CC-CEE
Confidence 9999975 45 344
No 354
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.61 E-value=8.5 Score=42.08 Aligned_cols=53 Identities=15% Similarity=0.132 Sum_probs=28.8
Q ss_pred eEEEEEEeCCCCcee-ecccC---------Ccce-EeeeecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979 380 RSYLGILDDFGHSLS-LLDIP---------FTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (623)
Q Consensus 380 ~~~L~~~d~~~~~~~-~lt~~---------~~~v-~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~ 436 (623)
...|+.+|+.+|+.. +...+ .... ..+...++.+|+ ++. ...||.+|.++|++
T Consensus 365 ~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~-g~~---dG~l~ald~~tG~~ 428 (488)
T cd00216 365 KGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFA-GAA---DGYFRAFDATTGKE 428 (488)
T ss_pred ceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEE-ECC---CCeEEEEECCCCce
Confidence 356888888887653 11111 0011 122334554444 332 35799999999873
No 355
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=94.58 E-value=0.3 Score=50.89 Aligned_cols=96 Identities=11% Similarity=0.060 Sum_probs=58.4
Q ss_pred eEEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 006979 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (623)
Q Consensus 149 ~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl 228 (623)
+..+.+..++......|+.+++|..+. ....+... ....+-.+++|||.+++.-+.|+ .-.||+++.
T Consensus 412 ~~~fhpsg~va~Gt~~G~w~V~d~e~~--~lv~~~~d----~~~ls~v~ysp~G~~lAvgs~d~-------~iyiy~Vs~ 478 (626)
T KOG2106|consen 412 CADFHPSGVVAVGTATGRWFVLDTETQ--DLVTIHTD----NEQLSVVRYSPDGAFLAVGSHDN-------HIYIYRVSA 478 (626)
T ss_pred EeeccCcceEEEeeccceEEEEecccc--eeEEEEec----CCceEEEEEcCCCCEEEEecCCC-------eEEEEEECC
Confidence 333333335556667788888888654 22222221 23345578999999988765542 256777777
Q ss_pred CCCCcccceecc--cCCCcccceeeCCCCCEEEEE
Q 006979 229 NGQNIQEPKVLV--SGSDFYAFPRMDPRGERMAWI 261 (623)
Q Consensus 229 ~~g~~~~~~~l~--~~~~~~~~p~wSPDG~~la~~ 261 (623)
++.. ...+- .+ .+.....||+|+++|.-.
T Consensus 479 ~g~~---y~r~~k~~g-s~ithLDwS~Ds~~~~~~ 509 (626)
T KOG2106|consen 479 NGRK---YSRVGKCSG-SPITHLDWSSDSQFLVSN 509 (626)
T ss_pred CCcE---EEEeeeecC-ceeEEeeecCCCceEEec
Confidence 6654 33321 23 566778899999976533
No 356
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=94.57 E-value=6.6 Score=40.62 Aligned_cols=199 Identities=13% Similarity=0.173 Sum_probs=95.8
Q ss_pred eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCC
Q 006979 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 271 (623)
Q Consensus 192 ~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~ 271 (623)
...+..++|+-..++-...+. .-.+|.+.+.+. +..+....+-+......|.|.||.+.+.+.
T Consensus 263 ki~~v~~~~~~~~v~~aSad~-------~i~vws~~~~s~----~~~~~~h~~~V~~ls~h~tgeYllsAs~d~------ 325 (506)
T KOG0289|consen 263 KITSVKFHKDLDTVITASADE-------IIRVWSVPLSSE----PTSSRPHEEPVTGLSLHPTGEYLLSASNDG------ 325 (506)
T ss_pred EEEEEEeccchhheeecCCcc-------eEEeeccccccC----ccccccccccceeeeeccCCcEEEEecCCc------
Confidence 345667788775544332221 133444443332 222222233455667899999988876322
Q ss_pred ceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeeccccccccc
Q 006979 272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPL 351 (623)
Q Consensus 272 ~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~ 351 (623)
.....|+..+.. ..+......+ ..+...++.||| ++|.....++.-. .+|+.++. .+...... .++
T Consensus 326 --~w~Fsd~~~g~~---lt~vs~~~s~--v~~ts~~fHpDg-Lifgtgt~d~~vk--iwdlks~~--~~a~Fpgh-t~~- 391 (506)
T KOG0289|consen 326 --TWAFSDISSGSQ---LTVVSDETSD--VEYTSAAFHPDG-LIFGTGTPDGVVK--IWDLKSQT--NVAKFPGH-TGP- 391 (506)
T ss_pred --eEEEEEccCCcE---EEEEeecccc--ceeEEeeEcCCc-eEEeccCCCceEE--EEEcCCcc--ccccCCCC-CCc-
Confidence 234446666532 2222221101 456788999999 6666654345444 45555543 22221111 111
Q ss_pred ccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCC-CceeecccCC-cceEee--eecCCEEEEEEecCCCCCeEE
Q 006979 352 WVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG-HSLSLLDIPF-TDIDNI--TLGNDCLFVEGASGVEPSSVA 427 (623)
Q Consensus 352 w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~-~~~~~lt~~~-~~v~~~--~~~~~~~~~~~~s~~~~~~ly 427 (623)
.....|. ++++.+.+..+++...|| |+.. ...+.+..+. -.+..+ +..|.++...+ ..-.+|
T Consensus 392 ----vk~i~Fs----ENGY~Lat~add~~V~lw--DLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g----~~l~Vy 457 (506)
T KOG0289|consen 392 ----VKAISFS----ENGYWLATAADDGSVKLW--DLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG----SDLQVY 457 (506)
T ss_pred ----eeEEEec----cCceEEEEEecCCeEEEE--EehhhcccceeeccccccceeEEEcCCCCeEEeec----ceeEEE
Confidence 1233444 677766666677765554 5432 2333333332 124444 44454444332 223566
Q ss_pred EEEcCCCc
Q 006979 428 KVTLDDHK 435 (623)
Q Consensus 428 ~~~l~~~~ 435 (623)
.++-.+..
T Consensus 458 ~~~k~~k~ 465 (506)
T KOG0289|consen 458 ICKKKTKS 465 (506)
T ss_pred EEeccccc
Confidence 66544444
No 357
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.54 E-value=0.092 Score=57.86 Aligned_cols=74 Identities=16% Similarity=0.355 Sum_probs=48.5
Q ss_pred cCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhC--C--CCC---CCceEEEEcChHHHHHHHHhcC
Q 006979 522 SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS--G--KAD---EKRLCITGGSAGGYTTLAALAF 594 (623)
Q Consensus 522 ~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~--~--~~d---~~rv~i~G~S~GG~~~~~~~~~ 594 (623)
..-|..+++|+-+ ++. +.+|+.-....+=+..|++++.++ + .-+ |.-|.++||||||.++.+++++
T Consensus 130 ~~~~DFFaVDFnE------e~t-Am~G~~l~dQtEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tl 202 (973)
T KOG3724|consen 130 PFSFDFFAVDFNE------EFT-AMHGHILLDQTEYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTL 202 (973)
T ss_pred ccccceEEEcccc------hhh-hhccHhHHHHHHHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhh
Confidence 3456777888654 221 233333333455677888887663 2 334 6779999999999999999987
Q ss_pred CCceeEEE
Q 006979 595 RDTFKAGA 602 (623)
Q Consensus 595 ~~~f~a~v 602 (623)
++..+..|
T Consensus 203 kn~~~~sV 210 (973)
T KOG3724|consen 203 KNEVQGSV 210 (973)
T ss_pred hhhccchh
Confidence 76555544
No 358
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.53 E-value=6.5 Score=40.46 Aligned_cols=130 Identities=10% Similarity=0.059 Sum_probs=71.5
Q ss_pred eEEE-eCCEEEEEeCCC------CcEEEEeCCCCCCCceec--CCCC-------C--CCCeeecceeeCCCCCEEEEEEe
Q 006979 149 AFRI-FGDTVIFSNYKD------QRLYKHSIDSKDSSPLPI--TPDY-------G--EPLVSYADGIFDPRFNRYVTVRE 210 (623)
Q Consensus 149 ~~~~-s~d~l~f~~~~~------~~l~~~d~~~g~~~~~~L--t~~~-------~--~~~~~~~d~~~sPdG~~l~~v~~ 210 (623)
+++. .++.++++.+.. ..|+.++.++. ..+.+ .... . ....-+...+++|||+.|+.+.+
T Consensus 89 gi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~--~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 89 GIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGR--VIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred HeEEecCCCEEEEeCCccCCCCCCEEEEECCCCc--ccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 4444 444777777777 78999998743 22333 2110 0 01112456889999998888877
Q ss_pred ccCCCCC-------CceeEEEEEEcCC-CCccccee----ccc-----CCCcccceeeCCCCCEEEEEEecCCCCCCCce
Q 006979 211 DRRQDAL-------NSTTEIVAIALNG-QNIQEPKV----LVS-----GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 273 (623)
Q Consensus 211 ~~~~~~~-------~~~~~L~~idl~~-g~~~~~~~----l~~-----~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~ 273 (623)
..-..+. .....|+.+|..+ +.. ..+ +.. ...-.....+-|||+ |+.++.+...---...
T Consensus 167 ~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~--~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~~~~~~~~~~ 243 (326)
T PF13449_consen 167 SPLKQDGPRANPDNGSPLRILRYDPKTPGEP--VAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERDFSPGTGNYK 243 (326)
T ss_pred ccccCCCcccccccCceEEEEEecCCCCCcc--ceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEccCCCCccceE
Confidence 5421111 1236788899876 321 111 111 112234456888988 5556533211011356
Q ss_pred EEEEEEecCC
Q 006979 274 ELWVGYISEN 283 (623)
Q Consensus 274 ~L~v~d~~~~ 283 (623)
+||.+++...
T Consensus 244 ri~~v~l~~a 253 (326)
T PF13449_consen 244 RIYRVDLSDA 253 (326)
T ss_pred EEEEEEcccc
Confidence 7888887643
No 359
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=94.50 E-value=0.11 Score=55.34 Aligned_cols=132 Identities=17% Similarity=0.192 Sum_probs=78.7
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC-------c--------------CCHHhHHHHcCceEEEE
Q 006979 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-------I--------------LNLSIQYWTSRGWAFVD 529 (623)
Q Consensus 471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~-------~--------------~~~~~~~~a~~G~~v~~ 529 (623)
.+..+..|++...+. .+..|+|+++.|||+..... . +.....-|.+. ..++-
T Consensus 48 ~~~~lfy~f~es~~~------~~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~-anllf 120 (433)
T PLN03016 48 ENVQFFYYFIKSENN------PKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTKM-ANIIF 120 (433)
T ss_pred CCeEEEEEEEecCCC------cccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhhc-CcEEE
Confidence 456788788876541 35679999999998644311 0 01122234443 57888
Q ss_pred ECCCCCCCCchhHHHhhccCCcc-chHHHHHHHHH-HHHhCCCCCCCceEEEEcChHHHHHHHHh-c---CC-------C
Q 006979 530 VNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCAT-FLVGSGKADEKRLCITGGSAGGYTTLAAL-A---FR-------D 596 (623)
Q Consensus 530 ~d~rGs~~~g~~~~~~~~~~~g~-~~~~D~~~~~~-~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~---~~-------~ 596 (623)
+|.+-+.||... +........ ..++|+..++. |+.+.+..-...+.|.|-||||..+-.++ . .. =
T Consensus 121 iDqPvGtGfSy~--~~~~~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~~i 198 (433)
T PLN03016 121 LDQPVGSGFSYS--KTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPI 198 (433)
T ss_pred ecCCCCCCccCC--CCCCCccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccCCcc
Confidence 886655555321 111111111 12345555544 55555655567899999999998665554 1 11 1
Q ss_pred ceeEEEecccCCCHH
Q 006979 597 TFKAGASLYGVSIPV 611 (623)
Q Consensus 597 ~f~a~v~~~g~~d~~ 611 (623)
-+++++...|.+|..
T Consensus 199 nLkGi~iGNg~t~~~ 213 (433)
T PLN03016 199 NLQGYMLGNPVTYMD 213 (433)
T ss_pred cceeeEecCCCcCch
Confidence 578999999988764
No 360
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=94.50 E-value=0.29 Score=51.56 Aligned_cols=115 Identities=12% Similarity=0.053 Sum_probs=77.1
Q ss_pred CCEEEEecCCCCCcccCcC----C-HHhHHHHcCceEEEEECCCCCCCCchhHH------HhhccCCccchHHHHHHHHH
Q 006979 495 PPLLVKSHGGPTSEARGIL----N-LSIQYWTSRGWAFVDVNYGGSTGYGREFR------ERLLGRWGIVDVNDCCSCAT 563 (623)
Q Consensus 495 ~Pliv~~hGg~~~~~~~~~----~-~~~~~~a~~G~~v~~~d~rGs~~~g~~~~------~~~~~~~g~~~~~D~~~~~~ 563 (623)
-|..|++-|- +.....+ . .+.++-.+.|-.|+..++|- ||+... ..++.---.+...|+...|+
T Consensus 86 gPiFLmIGGE--gp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRF---YG~S~P~~~~st~nlk~LSs~QALaDla~fI~ 160 (514)
T KOG2182|consen 86 GPIFLMIGGE--GPESDKWVGNENLTWLQWAKKFGATVFQLEHRF---YGQSSPIGDLSTSNLKYLSSLQALADLAEFIK 160 (514)
T ss_pred CceEEEEcCC--CCCCCCccccCcchHHHHHHHhCCeeEEeeeec---cccCCCCCCCcccchhhhhHHHHHHHHHHHHH
Confidence 4788888554 3333222 2 34444456799999999997 343211 01111112345788888888
Q ss_pred HHHhC-CCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC----CCHHHhh
Q 006979 564 FLVGS-GKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV----SIPVIIS 614 (623)
Q Consensus 564 ~l~~~-~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~----~d~~~~~ 614 (623)
.+..+ +.-|+.+...+|+||-|.++.+.= .+|++..++|+.+++ +|..+|.
T Consensus 161 ~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv~A~~DF~EY~ 217 (514)
T KOG2182|consen 161 AMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPVLAKVDFYEYL 217 (514)
T ss_pred HHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccceeEEecHHHHH
Confidence 88665 456667999999999999999987 899998888887775 4666653
No 361
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=94.48 E-value=0.2 Score=54.29 Aligned_cols=132 Identities=17% Similarity=0.181 Sum_probs=87.2
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCC--HHhHHHHcCceEEEEECCCCCCCCc---hhHH--Hhh
Q 006979 474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN--LSIQYWTSRGWAFVDVNYGGSTGYG---REFR--ERL 546 (623)
Q Consensus 474 ~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~--~~~~~~a~~G~~v~~~d~rGs~~~g---~~~~--~~~ 546 (623)
.|...+++|.+ + +++ ++.+=||.......... .....-..+||+++.-|--..+.-+ ..|. ...
T Consensus 16 ~i~fev~LP~~--W----NgR---~~~~GgGG~~G~i~~~~~~~~~~~~~~~G~A~~~TD~Gh~~~~~~~~~~~~~n~~~ 86 (474)
T PF07519_consen 16 NIRFEVWLPDN--W----NGR---FLQVGGGGFAGGINYADGKASMATALARGYATASTDSGHQGSAGSDDASFGNNPEA 86 (474)
T ss_pred eEEEEEECChh--h----ccC---eEEECCCeeeCcccccccccccchhhhcCeEEEEecCCCCCCcccccccccCCHHH
Confidence 67777888875 3 233 44443332222111111 1134456889999999954322211 1121 112
Q ss_pred ccCCccchHHHHHHHHHHHHhCCC-CCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHHhh
Q 006979 547 LGRWGIVDVNDCCSCATFLVGSGK-ADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVIIS 614 (623)
Q Consensus 547 ~~~~g~~~~~D~~~~~~~l~~~~~-~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~~ 614 (623)
..+|+...+.+...+.+.|+++-+ -.|++-.-.|.|-||-..|.++ ++|+.|.++++.+|..++..+.
T Consensus 87 ~~dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~~~~~~ 156 (474)
T PF07519_consen 87 LLDFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAINWTHLQ 156 (474)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHHHHHHH
Confidence 345676777788888888887533 4678999999999999999999 8999999999999999987653
No 362
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=94.48 E-value=0.16 Score=47.37 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=33.3
Q ss_pred CCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979 570 KADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI 609 (623)
Q Consensus 570 ~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d 609 (623)
-++++||+|-|+|+||.++++++ +++....+.+..+|+.-
T Consensus 89 Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p 129 (206)
T KOG2112|consen 89 GIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLP 129 (206)
T ss_pred CCCccceeEcccCchHHHHHHHHhccccccceeeccccccc
Confidence 37899999999999999999999 78766677777777654
No 363
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=94.39 E-value=0.71 Score=50.13 Aligned_cols=118 Identities=12% Similarity=0.050 Sum_probs=65.9
Q ss_pred cceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCce
Q 006979 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 273 (623)
Q Consensus 194 ~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~ 273 (623)
...+.||+|+.++-.+..... ....|++.+..+=. +...|....--+.+..|||||++|+-++.|+ ..
T Consensus 529 ~~l~~s~~gnliASaCKS~~~----ehAvI~lw~t~~W~--~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR------t~ 596 (764)
T KOG1063|consen 529 YALAISPTGNLIASACKSSLK----EHAVIRLWNTANWL--QVQELEGHSLTVTRLAFSPDGRYLLSVSRDR------TV 596 (764)
T ss_pred EEEEecCCCCEEeehhhhCCc----cceEEEEEeccchh--hhheecccceEEEEEEECCCCcEEEEeecCc------eE
Confidence 467789999977765543211 12667777765522 1344544333466789999999999887665 23
Q ss_pred EEEEEEecCCCceeeeE--EEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEe
Q 006979 274 ELWVGYISENGDVYKRV--CVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWI 331 (623)
Q Consensus 274 ~L~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d 331 (623)
.||-. ..+.. ...+ .+.... ..+-...|+||++.++.+.+ +..-.+|...
T Consensus 597 sl~~~--~~~~~-~e~~fa~~k~Ht----RIIWdcsW~pde~~FaTaSR-DK~VkVW~~~ 648 (764)
T KOG1063|consen 597 SLYEV--QEDIK-DEFRFACLKAHT----RIIWDCSWSPDEKYFATASR-DKKVKVWEEP 648 (764)
T ss_pred Eeeee--ecccc-hhhhhccccccc----eEEEEcccCcccceeEEecC-CceEEEEecc
Confidence 35543 22110 0111 111111 34456679999965445555 4455566553
No 364
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=94.37 E-value=0.47 Score=49.46 Aligned_cols=145 Identities=8% Similarity=-0.008 Sum_probs=89.6
Q ss_pred ccCCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCC
Q 006979 86 GASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKD 164 (623)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~ 164 (623)
.++...-.+..+|+..|-|.--- +|...+|-.... .....+.. |.-|..++.+++| .-+++...|
T Consensus 507 ssapaCyALa~spDakvcFsccs---dGnI~vwDLhnq---~~VrqfqG--------htDGascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 507 SSAPACYALAISPDAKVCFSCCS---DGNIAVWDLHNQ---TLVRQFQG--------HTDGASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred CcchhhhhhhcCCccceeeeecc---CCcEEEEEcccc---eeeecccC--------CCCCceeEEecCCCceeecCCCc
Confidence 33455566777776666665433 477777765543 12222221 2345678888866 667888888
Q ss_pred CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCC
Q 006979 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD 244 (623)
Q Consensus 165 ~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~ 244 (623)
+.+.-+|+.++ +++... +-........++|+|.+|+.-+++ ++++++...+.+ .-+|.-...
T Consensus 573 ntvRcWDlreg----rqlqqh--dF~SQIfSLg~cP~~dWlavGMen---------s~vevlh~skp~---kyqlhlheS 634 (705)
T KOG0639|consen 573 NTVRCWDLREG----RQLQQH--DFSSQIFSLGYCPTGDWLAVGMEN---------SNVEVLHTSKPE---KYQLHLHES 634 (705)
T ss_pred cceeehhhhhh----hhhhhh--hhhhhheecccCCCccceeeeccc---------CcEEEEecCCcc---ceeeccccc
Confidence 88999999865 333321 001233456689999999998875 456777665544 344544444
Q ss_pred cccceeeCCCCCEEEEEE
Q 006979 245 FYAFPRMDPRGERMAWIE 262 (623)
Q Consensus 245 ~~~~p~wSPDG~~la~~~ 262 (623)
.+-...|++-|||.+-+.
T Consensus 635 cVLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 635 CVLSLKFAYCGKWFVSTG 652 (705)
T ss_pred EEEEEEecccCceeeecC
Confidence 455678999999865443
No 365
>PRK02888 nitrous-oxide reductase; Validated
Probab=94.35 E-value=4.3 Score=44.75 Aligned_cols=134 Identities=8% Similarity=-0.017 Sum_probs=68.6
Q ss_pred ceeEEEEEEcCCCCcccceec-ccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCC
Q 006979 219 STTEIVAIALNGQNIQEPKVL-VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP 297 (623)
Q Consensus 219 ~~~~L~~idl~~g~~~~~~~l-~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~ 297 (623)
..+.+-+||.++-++ ..++ ..+ ..-...++|||++++....+.. ....+..++..+. ...+.....
T Consensus 213 y~~~vSvID~etmeV--~~qV~Vdg--npd~v~~spdGk~afvTsyNsE----~G~tl~em~a~e~----d~~vvfni~- 279 (635)
T PRK02888 213 YRSLFTAVDAETMEV--AWQVMVDG--NLDNVDTDYDGKYAFSTCYNSE----EGVTLAEMMAAER----DWVVVFNIA- 279 (635)
T ss_pred eeEEEEEEECccceE--EEEEEeCC--CcccceECCCCCEEEEeccCcc----cCcceeeeccccC----ceEEEEchH-
Confidence 457788899887552 2222 222 1223469999998877654321 1334555555333 111111111
Q ss_pred CccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCC----C-eEEEEeecccccccccccccCcceeEEeecCCCCEEE
Q 006979 298 TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN----N-EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIA 372 (623)
Q Consensus 298 ~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~----~-~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~ 372 (623)
. --.+.+||+..++. ..++-.+|..+ + +.....+...... .+.+ +|||+++|
T Consensus 280 ---~---iea~vkdGK~~~V~-----gn~V~VID~~t~~~~~~~v~~yIPVGKsPH---------GV~v---SPDGkyly 336 (635)
T PRK02888 280 ---R---IEEAVKAGKFKTIG-----GSKVPVVDGRKAANAGSALTRYVPVPKNPH---------GVNT---SPDGKYFI 336 (635)
T ss_pred ---H---HHHhhhCCCEEEEC-----CCEEEEEECCccccCCcceEEEEECCCCcc---------ceEE---CCCCCEEE
Confidence 0 12566799844442 12577888776 2 3333223211111 1222 34999888
Q ss_pred EEEEECCeEEEEEEeCCC
Q 006979 373 CSYRQNGRSYLGILDDFG 390 (623)
Q Consensus 373 ~~~~~~g~~~L~~~d~~~ 390 (623)
++..- ...+-++|.+.
T Consensus 337 Vankl--S~tVSVIDv~k 352 (635)
T PRK02888 337 ANGKL--SPTVTVIDVRK 352 (635)
T ss_pred EeCCC--CCcEEEEEChh
Confidence 87643 34455667665
No 366
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.32 E-value=2.7 Score=46.21 Aligned_cols=158 Identities=13% Similarity=0.110 Sum_probs=90.3
Q ss_pred cCCceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 006979 145 YGGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (623)
Q Consensus 145 ~g~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L 223 (623)
|.||.++++.+ ..+|....+ .|-.+|+.++ .. .++...........+..++||++.|+..... .-|
T Consensus 20 YtGG~~~~s~nG~~L~t~~~d-~Vi~idv~t~--~~-~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs---------~ll 86 (775)
T KOG0319|consen 20 YTGGPVAWSSNGQHLYTACGD-RVIIIDVATG--SI-ALPSGSNEDEDEITALALTPDEEVLVTASRS---------QLL 86 (775)
T ss_pred ecCCceeECCCCCEEEEecCc-eEEEEEccCC--ce-ecccCCccchhhhheeeecCCccEEEEeecc---------ceE
Confidence 66777888866 566664433 4888898877 32 2554422224456678899999887776442 446
Q ss_pred EEEEcCCCCcccceeccc-CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCcccc
Q 006979 224 VAIALNGQNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 302 (623)
Q Consensus 224 ~~idl~~g~~~~~~~l~~-~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~ 302 (623)
-++++.+|+. ++..-. ........+++|-|.-|+-..- ...+-+.|+..+- -...+.|.+ +-
T Consensus 87 rv~~L~tgk~--irswKa~He~Pvi~ma~~~~g~LlAtgga--------D~~v~VWdi~~~~---~th~fkG~g----Gv 149 (775)
T KOG0319|consen 87 RVWSLPTGKL--IRSWKAIHEAPVITMAFDPTGTLLATGGA--------DGRVKVWDIKNGY---CTHSFKGHG----GV 149 (775)
T ss_pred EEEEcccchH--hHhHhhccCCCeEEEEEcCCCceEEeccc--------cceEEEEEeeCCE---EEEEecCCC----ce
Confidence 6677777762 222211 2233445679999954443332 2347777887662 233455655 45
Q ss_pred CcCceeCCCCc--EEEEEeCCCCeeeEEEEecCCC
Q 006979 303 PTEPKWSSKGE--LFFVTDRKNGFWNLHKWIESNN 335 (623)
Q Consensus 303 ~~~~~ws~DG~--l~~~~~~~~g~~~L~~~d~~~~ 335 (623)
+....|.|+-. +++.... ++. +..+|..+.
T Consensus 150 Vssl~F~~~~~~~lL~sg~~-D~~--v~vwnl~~~ 181 (775)
T KOG0319|consen 150 VSSLLFHPHWNRWLLASGAT-DGT--VRVWNLNDK 181 (775)
T ss_pred EEEEEeCCccchhheeecCC-Cce--EEEEEcccC
Confidence 56666777654 3333322 344 444555443
No 367
>PLN02209 serine carboxypeptidase
Probab=94.30 E-value=0.16 Score=54.18 Aligned_cols=139 Identities=14% Similarity=0.177 Sum_probs=81.2
Q ss_pred EEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCc-------C--------------CHHhHHHHc
Q 006979 464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-------L--------------NLSIQYWTS 522 (623)
Q Consensus 464 i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~-------~--------------~~~~~~~a~ 522 (623)
+.+... .+..+..|++..... ....|+|+++.|||+...... + ......|.+
T Consensus 44 ~~v~~~-~~~~lf~~f~es~~~------~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~ 116 (437)
T PLN02209 44 IGIGEE-ENVQFFYYFIKSDKN------PQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTK 116 (437)
T ss_pred EEecCC-CCeEEEEEEEecCCC------CCCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhh
Confidence 444333 466788788776541 355799999999986443211 0 011223444
Q ss_pred CceEEEEECCCCCCCCchhHHHhhccCC-ccchHHHHHHHHH-HHHhCCCCCCCceEEEEcChHHHHHHHHh----cCC-
Q 006979 523 RGWAFVDVNYGGSTGYGREFRERLLGRW-GIVDVNDCCSCAT-FLVGSGKADEKRLCITGGSAGGYTTLAAL----AFR- 595 (623)
Q Consensus 523 ~G~~v~~~d~rGs~~~g~~~~~~~~~~~-g~~~~~D~~~~~~-~l~~~~~~d~~rv~i~G~S~GG~~~~~~~----~~~- 595 (623)
. ..++-+|.+-++||... ....... -..+.+|+...++ |+.+.+..-...+.|+|-||||..+-.++ ...
T Consensus 117 ~-anllfiDqPvGtGfSy~--~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~ 193 (437)
T PLN02209 117 T-ANIIFLDQPVGSGFSYS--KTPIERTSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNY 193 (437)
T ss_pred c-CcEEEecCCCCCCccCC--CCCCCccCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcc
Confidence 4 47788886655555421 1100111 1123456655555 44445555556899999999998665544 111
Q ss_pred ------CceeEEEecccCCCHHH
Q 006979 596 ------DTFKAGASLYGVSIPVI 612 (623)
Q Consensus 596 ------~~f~a~v~~~g~~d~~~ 612 (623)
=-+++++...|.+|...
T Consensus 194 ~~~~~~inl~Gi~igng~td~~~ 216 (437)
T PLN02209 194 ICCNPPINLQGYVLGNPITHIEF 216 (437)
T ss_pred cccCCceeeeeEEecCcccChhh
Confidence 14789999999988743
No 368
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=94.29 E-value=0.028 Score=53.98 Aligned_cols=109 Identities=17% Similarity=0.106 Sum_probs=48.2
Q ss_pred CCCEEEEecCCCCCcccCcCC----HHhHHHHcCceEEEEECCCCCC----CCch--------hHHHhhccCCcc-----
Q 006979 494 KPPLLVKSHGGPTSEARGILN----LSIQYWTSRGWAFVDVNYGGST----GYGR--------EFRERLLGRWGI----- 552 (623)
Q Consensus 494 ~~Pliv~~hGg~~~~~~~~~~----~~~~~~a~~G~~v~~~d~rGs~----~~g~--------~~~~~~~~~~g~----- 552 (623)
+.|-||++||..+ ....|. .....+.+.++-.+.+|-+-.- +... .........|-.
T Consensus 3 ~k~riLcLHG~~~--na~if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~ 80 (212)
T PF03959_consen 3 RKPRILCLHGYGQ--NAEIFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDDD 80 (212)
T ss_dssp ---EEEEE--TT----HHHHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-S
T ss_pred CCceEEEeCCCCc--CHHHHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCCc
Confidence 3478999999843 333333 3444454447888888854221 1110 011111222322
Q ss_pred chHHHHHHHHHHHHh----CCCCCCCceEEEEcChHHHHHHHHh-cC--------CCceeEEEecccCC
Q 006979 553 VDVNDCCSCATFLVG----SGKADEKRLCITGGSAGGYTTLAAL-AF--------RDTFKAGASLYGVS 608 (623)
Q Consensus 553 ~~~~D~~~~~~~l~~----~~~~d~~rv~i~G~S~GG~~~~~~~-~~--------~~~f~a~v~~~g~~ 608 (623)
....++..++++|.+ +|.+ .||+|+|.|+.++..++ .. ...||.+|..+|..
T Consensus 81 ~~~~~~~~sl~~l~~~i~~~GPf----dGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~ 145 (212)
T PF03959_consen 81 HEYEGLDESLDYLRDYIEENGPF----DGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFP 145 (212)
T ss_dssp GGG---HHHHHHHHHHHHHH-------SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES---
T ss_pred ccccCHHHHHHHHHHHHHhcCCe----EEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccC
Confidence 124556666665544 4433 59999999999998776 21 13589999888864
No 369
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.25 E-value=0.093 Score=51.53 Aligned_cols=98 Identities=13% Similarity=0.032 Sum_probs=61.7
Q ss_pred CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHH-HHHh-CCCCCC
Q 006979 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCAT-FLVG-SGKADE 573 (623)
Q Consensus 496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~-~l~~-~~~~d~ 573 (623)
|.++++|++ ......|.....++... .-|+..+.+|.+..... ....+|+.+..- .+.+ |+ .
T Consensus 1 ~pLF~fhp~--~G~~~~~~~L~~~l~~~-~~v~~l~a~g~~~~~~~----------~~~l~~~a~~yv~~Ir~~QP---~ 64 (257)
T COG3319 1 PPLFCFHPA--GGSVLAYAPLAAALGPL-LPVYGLQAPGYGAGEQP----------FASLDDMAAAYVAAIRRVQP---E 64 (257)
T ss_pred CCEEEEcCC--CCcHHHHHHHHHHhccC-ceeeccccCcccccccc----------cCCHHHHHHHHHHHHHHhCC---C
Confidence 457889988 45555677777777777 88999999985542221 223455444322 2222 22 2
Q ss_pred CceEEEEcChHHHHHHHHhc----CCCceeEEEecccCCC
Q 006979 574 KRLCITGGSAGGYTTLAALA----FRDTFKAGASLYGVSI 609 (623)
Q Consensus 574 ~rv~i~G~S~GG~~~~~~~~----~~~~f~a~v~~~g~~d 609 (623)
.-+.+.|+|+||.++.-++. ...-++..+.+..+..
T Consensus 65 GPy~L~G~S~GG~vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 65 GPYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred CCEEEEeeccccHHHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 47899999999999998872 2444555555544433
No 370
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.22 E-value=1.1 Score=49.69 Aligned_cols=195 Identities=15% Similarity=0.115 Sum_probs=100.9
Q ss_pred cceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCC-CCCEEEEEEecCCCCCCCc
Q 006979 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDP-RGERMAWIEWHHPNMPWDK 272 (623)
Q Consensus 194 ~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSP-DG~~la~~~~~~~~~p~~~ 272 (623)
-|..||-++ +|+-..-|. .-+||.+. ..+ --.++...+|+...+|.| |.+ +|++..-. .+
T Consensus 373 LDlSWSKn~-fLLSSSMDK-------TVRLWh~~--~~~---CL~~F~HndfVTcVaFnPvDDr--yFiSGSLD----~K 433 (712)
T KOG0283|consen 373 LDLSWSKNN-FLLSSSMDK-------TVRLWHPG--RKE---CLKVFSHNDFVTCVAFNPVDDR--YFISGSLD----GK 433 (712)
T ss_pred eecccccCC-eeEeccccc-------cEEeecCC--Ccc---eeeEEecCCeeEEEEecccCCC--cEeecccc----cc
Confidence 478888776 444333332 15576554 333 445567788999899999 555 45653321 13
Q ss_pred eEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEE---EEeec-ccccc
Q 006979 273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL---AIYSL-DAEFS 348 (623)
Q Consensus 273 ~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~---~l~~~-~~~~~ 348 (623)
|.+.++... ......+.. ..+..+.+.|||+.+++... +|..++|.. .+.+.+ .|... .....
T Consensus 434 --vRiWsI~d~----~Vv~W~Dl~----~lITAvcy~PdGk~avIGt~-~G~C~fY~t--~~lk~~~~~~I~~~~~Kk~~ 500 (712)
T KOG0283|consen 434 --VRLWSISDK----KVVDWNDLR----DLITAVCYSPDGKGAVIGTF-NGYCRFYDT--EGLKLVSDFHIRLHNKKKKQ 500 (712)
T ss_pred --eEEeecCcC----eeEeehhhh----hhheeEEeccCCceEEEEEe-ccEEEEEEc--cCCeEEEeeeEeeccCcccc
Confidence 444455443 222223333 57788999999996666655 677766632 232211 11111 00000
Q ss_pred cccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCC----cce-EeeeecCCEEEEEEecCCCC
Q 006979 349 RPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF----TDI-DNITLGNDCLFVEGASGVEP 423 (623)
Q Consensus 349 ~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~----~~v-~~~~~~~~~~~~~~~s~~~~ 423 (623)
+- -...+.+++. +...++++++ + ++|-++|.....+...-.+. ..+ ..++.+++.|++... -
T Consensus 501 ~~----rITG~Q~~p~--~~~~vLVTSn-D--SrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se----D 567 (712)
T KOG0283|consen 501 GK----RITGLQFFPG--DPDEVLVTSN-D--SRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASE----D 567 (712)
T ss_pred Cc----eeeeeEecCC--CCCeEEEecC-C--CceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeec----C
Confidence 00 1123444432 2235666664 3 44555676444443322222 122 234668888877653 2
Q ss_pred CeEEEEEcCC
Q 006979 424 SSVAKVTLDD 433 (623)
Q Consensus 424 ~~ly~~~l~~ 433 (623)
..+|..+.+.
T Consensus 568 s~VYiW~~~~ 577 (712)
T KOG0283|consen 568 SWVYIWKNDS 577 (712)
T ss_pred ceEEEEeCCC
Confidence 5678777644
No 371
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=94.16 E-value=1.5 Score=43.20 Aligned_cols=161 Identities=14% Similarity=0.130 Sum_probs=86.0
Q ss_pred ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCc
Q 006979 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 272 (623)
Q Consensus 193 ~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~ 272 (623)
+++..|+|...-|+-...| +.+-.+|..-......-.+..+.+.+....|.|.|.+|+.- .++|-
T Consensus 175 vn~l~FHPre~ILiS~srD---------~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvg-TdHp~----- 239 (430)
T KOG0640|consen 175 VNDLDFHPRETILISGSRD---------NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVG-TDHPT----- 239 (430)
T ss_pred ccceeecchhheEEeccCC---------CeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEe-cCCCc-----
Confidence 4677889987544332222 45666676543211011223344445567899999988744 47763
Q ss_pred eEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccc
Q 006979 273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLW 352 (623)
Q Consensus 273 ~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w 352 (623)
+.++|+++-.. -+-...+..-.+.+.++.+++.|++|..... +|.-.|| |--+ -+.+..-....++.
T Consensus 240 --~rlYdv~T~Qc----fvsanPd~qht~ai~~V~Ys~t~~lYvTaSk-DG~Iklw--DGVS--~rCv~t~~~AH~gs-- 306 (430)
T KOG0640|consen 240 --LRLYDVNTYQC----FVSANPDDQHTGAITQVRYSSTGSLYVTASK-DGAIKLW--DGVS--NRCVRTIGNAHGGS-- 306 (430)
T ss_pred --eeEEeccceeE----eeecCcccccccceeEEEecCCccEEEEecc-CCcEEee--cccc--HHHHHHHHhhcCCc--
Confidence 77888876421 1111111122256789999999998887776 6766665 3222 23333111111110
Q ss_pred cccCcceeEEeecCCCCEEEEEEEECCeEEEEEEe
Q 006979 353 VFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 387 (623)
Q Consensus 353 ~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d 387 (623)
...+..|. .++++++++-.+....||-+.
T Consensus 307 --evcSa~Ft----kn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 307 --EVCSAVFT----KNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred --eeeeEEEc----cCCeEEeecCCcceeeeeeec
Confidence 11123343 566666776556666666554
No 372
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.12 E-value=0.11 Score=52.46 Aligned_cols=109 Identities=15% Similarity=0.043 Sum_probs=64.8
Q ss_pred CEEEEecCCCCCcccCcCCHHhHHHHcCce--EEEEECCCCCCC-CchhHHHhhccCCccchHHHHHHHHHHHHhCCCCC
Q 006979 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGW--AFVDVNYGGSTG-YGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 572 (623)
Q Consensus 496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~--~v~~~d~rGs~~-~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d 572 (623)
-++|++||.... ....-...+|...+.|+ +.+.+-.+..+. .|-.|. +.--.+...++...+++|.+++.+
T Consensus 117 ~vlvFvHGfNnt-f~dav~R~aqI~~d~g~~~~pVvFSWPS~g~l~~Yn~D----reS~~~Sr~aLe~~lr~La~~~~~- 190 (377)
T COG4782 117 TVLVFVHGFNNT-FEDAVYRTAQIVHDSGNDGVPVVFSWPSRGSLLGYNYD----RESTNYSRPALERLLRYLATDKPV- 190 (377)
T ss_pred eEEEEEcccCCc-hhHHHHHHHHHHhhcCCCcceEEEEcCCCCeeeecccc----hhhhhhhHHHHHHHHHHHHhCCCC-
Confidence 489999997322 11122233444444443 334444443221 111111 111123467888999999988654
Q ss_pred CCceEEEEcChHHHHHHHHhc----C-----CCceeEEEecccCCCHH
Q 006979 573 EKRLCITGGSAGGYTTLAALA----F-----RDTFKAGASLYGVSIPV 611 (623)
Q Consensus 573 ~~rv~i~G~S~GG~~~~~~~~----~-----~~~f~a~v~~~g~~d~~ 611 (623)
++|.|+.||||.++++.+++ . +..|+=+|..+|=.|.-
T Consensus 191 -~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD~D 237 (377)
T COG4782 191 -KRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDIDVD 237 (377)
T ss_pred -ceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCChh
Confidence 79999999999999997762 1 23577788888866653
No 373
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=93.81 E-value=2.4 Score=47.13 Aligned_cols=201 Identities=9% Similarity=-0.005 Sum_probs=97.4
Q ss_pred CceEEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCE-EEEEEeccCCCCCCceeEEEE
Q 006979 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNR-YVTVREDRRQDALNSTTEIVA 225 (623)
Q Consensus 147 ~~~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~-l~~v~~~~~~~~~~~~~~L~~ 225 (623)
+..+.|+.+..+.+..-|..+-+|++... .-...... ..++.-.+|.|-..+ ++--+-|+. -+||
T Consensus 372 ILDlSWSKn~fLLSSSMDKTVRLWh~~~~-~CL~~F~H-----ndfVTcVaFnPvDDryFiSGSLD~K-------vRiW- 437 (712)
T KOG0283|consen 372 ILDLSWSKNNFLLSSSMDKTVRLWHPGRK-ECLKVFSH-----NDFVTCVAFNPVDDRYFISGSLDGK-------VRLW- 437 (712)
T ss_pred heecccccCCeeEeccccccEEeecCCCc-ceeeEEec-----CCeeEEEEecccCCCcEeecccccc-------eEEe-
Confidence 34566777767777666666666666543 22334443 345677788884443 332233321 3455
Q ss_pred EEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEE-EcCCCCCccccCc
Q 006979 226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC-VAGFDPTIVESPT 304 (623)
Q Consensus 226 idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~ 304 (623)
++...+ +..-.+-.+.+...+++|||+..+.-..+ +..+.++..+..-.....+ +.......-..+.
T Consensus 438 -sI~d~~---Vv~W~Dl~~lITAvcy~PdGk~avIGt~~--------G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rIT 505 (712)
T KOG0283|consen 438 -SISDKK---VVDWNDLRDLITAVCYSPDGKGAVIGTFN--------GYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRIT 505 (712)
T ss_pred -ecCcCe---eEeehhhhhhheeEEeccCCceEEEEEec--------cEEEEEEccCCeEEEeeeEeeccCccccCceee
Confidence 443333 22223334667788999999976544322 2244555444321111111 1111100002355
Q ss_pred CceeCCCC--cEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEE
Q 006979 305 EPKWSSKG--ELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY 382 (623)
Q Consensus 305 ~~~ws~DG--~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~ 382 (623)
.+++.|.. ++++.+++ .+|-.+|....++.....+-..... +..-.|.. ||++|+..+ ++....
T Consensus 506 G~Q~~p~~~~~vLVTSnD----SrIRI~d~~~~~lv~KfKG~~n~~S------Q~~Asfs~---Dgk~IVs~s-eDs~VY 571 (712)
T KOG0283|consen 506 GLQFFPGDPDEVLVTSND----SRIRIYDGRDKDLVHKFKGFRNTSS------QISASFSS---DGKHIVSAS-EDSWVY 571 (712)
T ss_pred eeEecCCCCCeEEEecCC----CceEEEeccchhhhhhhcccccCCc------ceeeeEcc---CCCEEEEee-cCceEE
Confidence 66666533 36666655 2455566433333222222111111 11112332 888888887 566666
Q ss_pred EEEEe
Q 006979 383 LGILD 387 (623)
Q Consensus 383 L~~~d 387 (623)
||.++
T Consensus 572 iW~~~ 576 (712)
T KOG0283|consen 572 IWKND 576 (712)
T ss_pred EEeCC
Confidence 66654
No 374
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=93.77 E-value=0.88 Score=48.40 Aligned_cols=101 Identities=15% Similarity=0.135 Sum_probs=62.4
Q ss_pred CCCCCEEEE----ecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHH-HHH
Q 006979 492 EEKPPLLVK----SHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCAT-FLV 566 (623)
Q Consensus 492 ~~~~Pliv~----~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~-~l~ 566 (623)
..++|.||+ .||-.-+.... ....-.-...|.-|..+-+.-...- .+..+|+..+.. ++.
T Consensus 66 ~~krP~vViDPRAGHGpGIGGFK~--dSevG~AL~~GHPvYFV~F~p~P~p-------------gQTl~DV~~ae~~Fv~ 130 (581)
T PF11339_consen 66 PTKRPFVVIDPRAGHGPGIGGFKP--DSEVGVALRAGHPVYFVGFFPEPEP-------------GQTLEDVMRAEAAFVE 130 (581)
T ss_pred CCCCCeEEeCCCCCCCCCccCCCc--ccHHHHHHHcCCCeEEEEecCCCCC-------------CCcHHHHHHHHHHHHH
Confidence 456788887 35432222222 3344444456888887776643322 234677776644 333
Q ss_pred h----CCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEE-EecccCCC
Q 006979 567 G----SGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAG-ASLYGVSI 609 (623)
Q Consensus 567 ~----~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~-v~~~g~~d 609 (623)
+ ++ |..|+.++|-|.||+++++++ .+|+++.-+ ++.+|++=
T Consensus 131 ~V~~~hp--~~~kp~liGnCQgGWa~~mlAA~~Pd~~gplvlaGaPlsy 177 (581)
T PF11339_consen 131 EVAERHP--DAPKPNLIGNCQGGWAAMMLAALRPDLVGPLVLAGAPLSY 177 (581)
T ss_pred HHHHhCC--CCCCceEEeccHHHHHHHHHHhcCcCccCceeecCCCccc
Confidence 2 22 234999999999999999988 889988644 45566553
No 375
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=93.76 E-value=0.18 Score=52.04 Aligned_cols=100 Identities=16% Similarity=0.129 Sum_probs=64.1
Q ss_pred EEEEecCCCCCcccCcCCHHhHHHHcCceE---EEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCC
Q 006979 497 LLVKSHGGPTSEARGILNLSIQYWTSRGWA---FVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (623)
Q Consensus 497 liv~~hGg~~~~~~~~~~~~~~~~a~~G~~---v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~ 573 (623)
.+|++||. ......+......+...|+. +..+++.+....... ....+-+.+-++.+..+.. .
T Consensus 61 pivlVhG~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----------~~~~~ql~~~V~~~l~~~g--a 126 (336)
T COG1075 61 PIVLVHGL--GGGYGNFLPLDYRLAILGWLTNGVYAFELSGGDGTYSL----------AVRGEQLFAYVDEVLAKTG--A 126 (336)
T ss_pred eEEEEccC--cCCcchhhhhhhhhcchHHHhcccccccccccCCCccc----------cccHHHHHHHHHHHHhhcC--C
Confidence 57779997 33444555566667777888 888887754111110 1112333344444433322 3
Q ss_pred CceEEEEcChHHHHHHHHh-cCC--CceeEEEecccCCCH
Q 006979 574 KRLCITGGSAGGYTTLAAL-AFR--DTFKAGASLYGVSIP 610 (623)
Q Consensus 574 ~rv~i~G~S~GG~~~~~~~-~~~--~~f~a~v~~~g~~d~ 610 (623)
++|-++|||+||.++.+.+ ..+ ..++..+...++-.-
T Consensus 127 ~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp~~G 166 (336)
T COG1075 127 KKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTPHHG 166 (336)
T ss_pred CceEEEeecccchhhHHHHhhcCccceEEEEEEeccCCCC
Confidence 7999999999999999888 555 789999988776433
No 376
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=93.72 E-value=7.7 Score=41.55 Aligned_cols=112 Identities=13% Similarity=0.140 Sum_probs=53.8
Q ss_pred EEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCC----CCCCeeecceeeCCCC-----CEEEEEEeccCCCCC--C
Q 006979 151 RIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDY----GEPLVSYADGIFDPRF-----NRYVTVREDRRQDAL--N 218 (623)
Q Consensus 151 ~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~----~~~~~~~~d~~~sPdG-----~~l~~v~~~~~~~~~--~ 218 (623)
++.+| .++++....++|++++..++ ..+.+.... .....-..+++++||- +..+|+......... .
T Consensus 36 aflPDG~llVtER~~G~I~~v~~~~~--~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~~ 113 (454)
T TIGR03606 36 LWGPDNQLWVTERATGKILRVNPETG--EVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKELP 113 (454)
T ss_pred EEcCCCeEEEEEecCCEEEEEeCCCC--ceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCCcc
Confidence 33444 55555433688999987654 222221110 0012234567788773 234444432111100 0
Q ss_pred ceeEEEEEEcCC--CCcccceecccC-----CCcccceeeCCCCCEEEEEEecC
Q 006979 219 STTEIVAIALNG--QNIQEPKVLVSG-----SDFYAFPRMDPRGERMAWIEWHH 265 (623)
Q Consensus 219 ~~~~L~~idl~~--g~~~~~~~l~~~-----~~~~~~p~wSPDG~~la~~~~~~ 265 (623)
....|.++.++. ......+.|..+ ..+-....|.|||+ |++..-+.
T Consensus 114 ~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD~ 166 (454)
T TIGR03606 114 NHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGEQ 166 (454)
T ss_pred CCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECCC
Confidence 236788877653 222222333221 12344567999996 77765443
No 377
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=93.61 E-value=0.086 Score=48.56 Aligned_cols=101 Identities=12% Similarity=0.088 Sum_probs=63.4
Q ss_pred EEEEecCCCCCcccCcCCHHhHHH-HcCceEEEEECCCCCCCCchhHHHhhccCCcc-chHHHHHHHHHHHHhCCCCCCC
Q 006979 497 LLVKSHGGPTSEARGILNLSIQYW-TSRGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGKADEK 574 (623)
Q Consensus 497 liv~~hGg~~~~~~~~~~~~~~~~-a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~-~~~~D~~~~~~~l~~~~~~d~~ 574 (623)
.|+.+.|.- +.....|.+....+ -..-+.+++.|.|| ||.+- ...+..+. .-.+|...|++-+... +.+
T Consensus 44 ~iLlipGal-Gs~~tDf~pql~~l~k~l~~TivawDPpG---YG~Sr--PP~Rkf~~~ff~~Da~~avdLM~aL---k~~ 114 (277)
T KOG2984|consen 44 YILLIPGAL-GSYKTDFPPQLLSLFKPLQVTIVAWDPPG---YGTSR--PPERKFEVQFFMKDAEYAVDLMEAL---KLE 114 (277)
T ss_pred eeEeccccc-ccccccCCHHHHhcCCCCceEEEEECCCC---CCCCC--CCcccchHHHHHHhHHHHHHHHHHh---CCC
Confidence 566676663 33444666544333 33459999999999 44421 11222222 1246777777766654 357
Q ss_pred ceEEEEcChHHHHHHHHh-cCCCceeEEEeccc
Q 006979 575 RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYG 606 (623)
Q Consensus 575 rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g 606 (623)
++.|+|+|=||.+++.++ .+++.+.-.|.+.+
T Consensus 115 ~fsvlGWSdGgiTalivAak~~e~v~rmiiwga 147 (277)
T KOG2984|consen 115 PFSVLGWSDGGITALIVAAKGKEKVNRMIIWGA 147 (277)
T ss_pred CeeEeeecCCCeEEEEeeccChhhhhhheeecc
Confidence 999999999999999888 77776655444433
No 378
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=93.60 E-value=5.5 Score=38.66 Aligned_cols=125 Identities=14% Similarity=0.078 Sum_probs=72.3
Q ss_pred ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceec--ccCCCcccceeeCCCCCEEEEEEecCCCCCC
Q 006979 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL--VSGSDFYAFPRMDPRGERMAWIEWHHPNMPW 270 (623)
Q Consensus 193 ~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l--~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~ 270 (623)
.+...+|||+++.+.|.+.+. --+|.+|-++..... ..+ +.+..|+. .||......|....|.
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~-------Vf~y~id~~sey~~~-~~~a~t~D~gF~~--S~s~~~~~FAv~~Qdg----- 225 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRR-------VFRYAIDDESEYIEN-IYEAPTSDHGFYN--SFSENDLQFAVVFQDG----- 225 (344)
T ss_pred eeeeEEcCCCceEEEecCCCc-------ceEEEeCCccceeee-eEecccCCCceee--eeccCcceEEEEecCC-----
Confidence 445779999999988855321 335555554433211 122 34455654 6998887777776443
Q ss_pred CceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc--EEEEEeCCCCeeeEEEEecCCCeEEEE
Q 006979 271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE--LFFVTDRKNGFWNLHKWIESNNEVLAI 340 (623)
Q Consensus 271 ~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~--l~~~~~~~~g~~~L~~~d~~~~~~~~l 340 (623)
.+.++|+..-+. .........+.-.+.+....|++-|- |+|.+. ++..+.++|..++.-.++
T Consensus 226 ---~~~I~DVR~~~t--pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sE---hfs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 226 ---TCAIYDVRNMAT--PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISE---HFSRVHVVDTRNYVNHQV 289 (344)
T ss_pred ---cEEEEEeccccc--chhhhcccCCCCCCceEEEEecCCCcceEEEEec---CcceEEEEEcccCceeeE
Confidence 366777765432 11111111111116677788998776 777765 466778888887764433
No 379
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=93.58 E-value=1.7 Score=42.86 Aligned_cols=131 Identities=10% Similarity=0.033 Sum_probs=87.9
Q ss_pred cEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCccc---CcC-CHHhHHHHcCceEEEEECCCCCC
Q 006979 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR---GIL-NLSIQYWTSRGWAFVDVNYGGST 536 (623)
Q Consensus 461 ~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~---~~~-~~~~~~~a~~G~~v~~~d~rGs~ 536 (623)
.++..+.+. . ..++..++-... + +.|+||..|.-...... .-| .+.++.+.++ |.|.-+|.+|.-
T Consensus 22 ~~e~~V~T~-~-G~v~V~V~Gd~~-------~-~kpaiiTyhDlglN~~scFq~ff~~p~m~ei~~~-fcv~HV~~PGqe 90 (326)
T KOG2931|consen 22 CQEHDVETA-H-GVVHVTVYGDPK-------G-NKPAIITYHDLGLNHKSCFQGFFNFPDMAEILEH-FCVYHVDAPGQE 90 (326)
T ss_pred ceeeeeccc-c-ccEEEEEecCCC-------C-CCceEEEecccccchHhHhHHhhcCHhHHHHHhh-eEEEecCCCccc
Confidence 456666665 4 357777775433 3 56889999986432222 112 2567778888 999999999853
Q ss_pred CCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979 537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608 (623)
Q Consensus 537 ~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~ 608 (623)
.- ......++.....+|+.+-+..+.++=. -+-|.-+|--+|+|+-...+ .||+++-+.|.+.+..
T Consensus 91 ~g----Ap~~p~~y~yPsmd~LAd~l~~VL~~f~--lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~ 157 (326)
T KOG2931|consen 91 DG----APSFPEGYPYPSMDDLADMLPEVLDHFG--LKSVIGMGVGAGAYILARFALNHPERVLGLVLINCDP 157 (326)
T ss_pred cC----CccCCCCCCCCCHHHHHHHHHHHHHhcC--cceEEEecccccHHHHHHHHhcChhheeEEEEEecCC
Confidence 22 1223444444456666666666655422 36788899999999998888 9999999999887654
No 380
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.49 E-value=4.2 Score=39.12 Aligned_cols=200 Identities=9% Similarity=0.020 Sum_probs=96.5
Q ss_pred eCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 006979 153 FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (623)
Q Consensus 153 s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~ 232 (623)
+.+.+++....||.|-++|+.-. ..+|..-.+. ..-+....|++-.++.+.+..-. ..|-+.+..-++
T Consensus 71 ~~e~~~~~a~GDGSLrl~d~~~~---s~Pi~~~kEH-~~EV~Svdwn~~~r~~~ltsSWD--------~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 71 NHENQVIAASGDGSLRLFDLTMP---SKPIHKFKEH-KREVYSVDWNTVRRRIFLTSSWD--------GTIKLWDPNRPN 138 (311)
T ss_pred CCcceEEEEecCceEEEeccCCC---CcchhHHHhh-hhheEEeccccccceeEEeeccC--------CceEeecCCCCc
Confidence 34456667778888888886422 2222211011 11233456888776666654211 234444444333
Q ss_pred cccceecccCCCcccceeeCCC-CCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCC
Q 006979 233 IQEPKVLVSGSDFYAFPRMDPR-GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 311 (623)
Q Consensus 233 ~~~~~~l~~~~~~~~~p~wSPD-G~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~D 311 (623)
. ++...+....+.+..|||- +.-++..+.|. .+.+.|+...| ....++... ..+..-.|+.=
T Consensus 139 S--v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~--------~l~lwdvr~~g---k~~~i~ah~----~Eil~cdw~ky 201 (311)
T KOG0277|consen 139 S--VQTFNGHNSCIYQAAFSPHIPNLFASASGDG--------TLRLWDVRSPG---KFMSIEAHN----SEILCCDWSKY 201 (311)
T ss_pred c--eEeecCCccEEEEEecCCCCCCeEEEccCCc--------eEEEEEecCCC---ceeEEEecc----ceeEeeccccc
Confidence 1 4444444455667889995 55455554332 24555655443 233333332 23345568765
Q ss_pred Cc-EEEEEeCCCCeeeEEEEecCCCe--EEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeC
Q 006979 312 GE-LFFVTDRKNGFWNLHKWIESNNE--VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (623)
Q Consensus 312 G~-l~~~~~~~~g~~~L~~~d~~~~~--~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~ 388 (623)
.. +++.... ++. |..+|+..-+ +-+|......+....|++ -...++.+.+-+-..+|+....
T Consensus 202 ~~~vl~Tg~v-d~~--vr~wDir~~r~pl~eL~gh~~AVRkvk~Sp------------h~~~lLaSasYDmT~riw~~~~ 266 (311)
T KOG0277|consen 202 NHNVLATGGV-DNL--VRGWDIRNLRTPLFELNGHGLAVRKVKFSP------------HHASLLASASYDMTVRIWDPER 266 (311)
T ss_pred CCcEEEecCC-Cce--EEEEehhhccccceeecCCceEEEEEecCc------------chhhHhhhccccceEEeccccc
Confidence 55 6655544 332 3344443321 222323333444444443 2334555555566667765543
Q ss_pred CCCceeec
Q 006979 389 FGHSLSLL 396 (623)
Q Consensus 389 ~~~~~~~l 396 (623)
..+.++..
T Consensus 267 ~ds~~e~~ 274 (311)
T KOG0277|consen 267 QDSAIETV 274 (311)
T ss_pred chhhhhhh
Confidence 33333333
No 381
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=93.48 E-value=0.18 Score=53.56 Aligned_cols=84 Identities=19% Similarity=0.330 Sum_probs=59.7
Q ss_pred CCEEEEecCCCCCccc-CcCCHHhHHHH-cCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhC----
Q 006979 495 PPLLVKSHGGPTSEAR-GILNLSIQYWT-SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS---- 568 (623)
Q Consensus 495 ~Pliv~~hGg~~~~~~-~~~~~~~~~~a-~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~---- 568 (623)
+-+||.+|||+..... .....+...|+ +.|.-|+.+||-=. .+..-....+.+.-|.-|++++
T Consensus 396 ~sli~HcHGGGfVAqsSkSHE~YLr~Wa~aL~cPiiSVdYSLA-----------PEaPFPRaleEv~fAYcW~inn~all 464 (880)
T KOG4388|consen 396 RSLIVHCHGGGFVAQSSKSHEPYLRSWAQALGCPIISVDYSLA-----------PEAPFPRALEEVFFAYCWAINNCALL 464 (880)
T ss_pred ceEEEEecCCceeeeccccccHHHHHHHHHhCCCeEEeeeccC-----------CCCCCCcHHHHHHHHHHHHhcCHHHh
Confidence 4589999999754433 23444555555 57999999998632 2233334578888899999885
Q ss_pred CCCCCCceEEEEcChHHHHHHH
Q 006979 569 GKADEKRLCITGGSAGGYTTLA 590 (623)
Q Consensus 569 ~~~d~~rv~i~G~S~GG~~~~~ 590 (623)
|+ ..+||++.|-|+||.+.+-
T Consensus 465 G~-TgEriv~aGDSAGgNL~~~ 485 (880)
T KOG4388|consen 465 GS-TGERIVLAGDSAGGNLCFT 485 (880)
T ss_pred Cc-ccceEEEeccCCCcceeeh
Confidence 44 4689999999999987543
No 382
>PRK02888 nitrous-oxide reductase; Validated
Probab=93.45 E-value=15 Score=40.69 Aligned_cols=134 Identities=9% Similarity=-0.011 Sum_probs=71.7
Q ss_pred CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCC
Q 006979 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD 244 (623)
Q Consensus 165 ~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~ 244 (623)
+.+-++|.++- ....++.-+ .+.-...++|||+++++.+-+... ...+..++..... . .+.-+..
T Consensus 215 ~~vSvID~etm-eV~~qV~Vd-----gnpd~v~~spdGk~afvTsyNsE~-----G~tl~em~a~e~d---~-~vvfni~ 279 (635)
T PRK02888 215 SLFTAVDAETM-EVAWQVMVD-----GNLDNVDTDYDGKYAFSTCYNSEE-----GVTLAEMMAAERD---W-VVVFNIA 279 (635)
T ss_pred EEEEEEECccc-eEEEEEEeC-----CCcccceECCCCCEEEEeccCccc-----CcceeeeccccCc---e-EEEEchH
Confidence 44677887754 122333322 133345689999988776533211 1456666654432 1 1111111
Q ss_pred cccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecC----CCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeC
Q 006979 245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE----NGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR 320 (623)
Q Consensus 245 ~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~ 320 (623)
...++.+||++.. +. ...+-++|... +..+ ...+..+ .++.....+|||+.+++++.
T Consensus 280 --~iea~vkdGK~~~-V~---------gn~V~VID~~t~~~~~~~v-~~yIPVG------KsPHGV~vSPDGkylyVank 340 (635)
T PRK02888 280 --RIEEAVKAGKFKT-IG---------GSKVPVVDGRKAANAGSAL-TRYVPVP------KNPHGVNTSPDGKYFIANGK 340 (635)
T ss_pred --HHHHhhhCCCEEE-EC---------CCEEEEEECCccccCCcce-EEEEECC------CCccceEECCCCCEEEEeCC
Confidence 1235788999665 32 23477888776 2111 1222233 34568899999996667665
Q ss_pred CCCeeeEEEEecCC
Q 006979 321 KNGFWNLHKWIESN 334 (623)
Q Consensus 321 ~~g~~~L~~~d~~~ 334 (623)
....+-.+|.++
T Consensus 341 --lS~tVSVIDv~k 352 (635)
T PRK02888 341 --LSPTVTVIDVRK 352 (635)
T ss_pred --CCCcEEEEEChh
Confidence 233455666654
No 383
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=17 Score=41.97 Aligned_cols=112 Identities=17% Similarity=0.115 Sum_probs=65.5
Q ss_pred ccccCc-CceeCCCCc--EEEEEeCCCC-eeeEEEEecCCC-eEEEEeeccccccc-ccccccCcceeEEeecCCCCEEE
Q 006979 299 IVESPT-EPKWSSKGE--LFFVTDRKNG-FWNLHKWIESNN-EVLAIYSLDAEFSR-PLWVFGINSYEIIQSHGEKNLIA 372 (623)
Q Consensus 299 ~~~~~~-~~~ws~DG~--l~~~~~~~~g-~~~L~~~d~~~~-~~~~l~~~~~~~~~-~~w~~~~~~~~~l~~s~~~~~l~ 372 (623)
|..... .+.++.|+. +++.... .+ +.++..+...++ ..+.++.++.++.. ..| +.+.+.++
T Consensus 337 W~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~hi~~~~~~~~~~~~~lt~g~w~v~~i~~~------------~~~~~~i~ 403 (755)
T KOG2100|consen 337 WVEHQNVEPVFSSDGSSYLKVDSVS-DGGYNHIAYLKLSNGSEPRMLTSGNWEVTSILGY------------DKDSNRIY 403 (755)
T ss_pred ccccccccceEeecCCceeEEEeec-cCCEEEEEEEEcCCCCccccccccceEEEEeccc------------cCCCceEE
Confidence 444333 477888875 4444444 44 677776666555 45555555444321 111 12667888
Q ss_pred EEEEE--CCeEEEEEEeCCCCceeecccCCc----ceEee--eecCCEEEEEEecCCCC
Q 006979 373 CSYRQ--NGRSYLGILDDFGHSLSLLDIPFT----DIDNI--TLGNDCLFVEGASGVEP 423 (623)
Q Consensus 373 ~~~~~--~g~~~L~~~d~~~~~~~~lt~~~~----~v~~~--~~~~~~~~~~~~s~~~~ 423 (623)
|.+.. .+..+||.+++.+...+.++.... .+..+ +.....+++.+..+..|
T Consensus 404 f~~~~~~~~~~~ly~i~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~v~~~~gP~~p 462 (755)
T KOG2100|consen 404 FDAYEEDPSERHLYSISLGSGTVESLTCSLITGPCTYLSVSFSKSAKYYVLSCSGPKVP 462 (755)
T ss_pred EEecCCCCCceEEEEEEccccccccccccCCCCcceEEEEecCCcccEEEEEccCCCCC
Confidence 88776 578899999999888777775533 23333 33445555555555555
No 384
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=93.36 E-value=0.24 Score=51.23 Aligned_cols=90 Identities=11% Similarity=0.047 Sum_probs=61.5
Q ss_pred CHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-
Q 006979 514 NLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL- 592 (623)
Q Consensus 514 ~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~- 592 (623)
.....+++++|.-|+.++.++-. .+.. ..++-.+..+++..+++.+.+... .++|-++|+|.||.+...++
T Consensus 129 ~s~V~~l~~~g~~vfvIsw~nPd-~~~~-----~~~~edYi~e~l~~aid~v~~itg--~~~InliGyCvGGtl~~~ala 200 (445)
T COG3243 129 KSLVRWLLEQGLDVFVISWRNPD-ASLA-----AKNLEDYILEGLSEAIDTVKDITG--QKDINLIGYCVGGTLLAAALA 200 (445)
T ss_pred ccHHHHHHHcCCceEEEeccCch-Hhhh-----hccHHHHHHHHHHHHHHHHHHHhC--ccccceeeEecchHHHHHHHH
Confidence 36789999999999999987521 1111 222222334677788888877532 37899999999999998877
Q ss_pred cCCCc-eeEEEecccCCCHH
Q 006979 593 AFRDT-FKAGASLYGVSIPV 611 (623)
Q Consensus 593 ~~~~~-f~a~v~~~g~~d~~ 611 (623)
.++.. ++.++.+.-..|..
T Consensus 201 ~~~~k~I~S~T~lts~~DF~ 220 (445)
T COG3243 201 LMAAKRIKSLTLLTSPVDFS 220 (445)
T ss_pred hhhhcccccceeeecchhhc
Confidence 44554 67666665555543
No 385
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=93.22 E-value=2.2 Score=43.69 Aligned_cols=143 Identities=15% Similarity=0.082 Sum_probs=77.1
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEe-------
Q 006979 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSN------- 161 (623)
Q Consensus 90 ~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~------- 161 (623)
++=++++.. ++.+|-.| .-.-|+..+..+ +....+.+...+.+-++. ....+.. .+.+||++
T Consensus 116 RPLGl~f~~~ggdL~VaD------AYlGL~~V~p~g-~~a~~l~~~~~G~~~kf~--N~ldI~~-~g~vyFTDSSsk~~~ 185 (376)
T KOG1520|consen 116 RPLGIRFDKKGGDLYVAD------AYLGLLKVGPEG-GLAELLADEAEGKPFKFL--NDLDIDP-EGVVYFTDSSSKYDR 185 (376)
T ss_pred CcceEEeccCCCeEEEEe------cceeeEEECCCC-CcceeccccccCeeeeec--CceeEcC-CCeEEEeccccccch
Confidence 445788877 66777655 344466666652 244444443323222211 1111111 22344432
Q ss_pred ----------CCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 006979 162 ----------YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ 231 (623)
Q Consensus 162 ----------~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g 231 (623)
..+|+|+++|..+. ..+.|.++ -.+.+..+.|||+.++++..-. ..+|.++=+.+.
T Consensus 186 rd~~~a~l~g~~~GRl~~YD~~tK--~~~VLld~----L~F~NGlaLS~d~sfvl~~Et~--------~~ri~rywi~g~ 251 (376)
T KOG1520|consen 186 RDFVFAALEGDPTGRLFRYDPSTK--VTKVLLDG----LYFPNGLALSPDGSFVLVAETT--------TARIKRYWIKGP 251 (376)
T ss_pred hheEEeeecCCCccceEEecCccc--chhhhhhc----ccccccccCCCCCCEEEEEeec--------cceeeeeEecCC
Confidence 34578999999876 67777764 3445677899999998885432 144555556554
Q ss_pred Ccccceeccc-CCCcccceeeCCCCC
Q 006979 232 NIQEPKVLVS-GSDFYAFPRMDPRGE 256 (623)
Q Consensus 232 ~~~~~~~l~~-~~~~~~~p~wSPDG~ 256 (623)
+......++. -+++.-..+-+++|.
T Consensus 252 k~gt~EvFa~~LPG~PDNIR~~~~G~ 277 (376)
T KOG1520|consen 252 KAGTSEVFAEGLPGYPDNIRRDSTGH 277 (376)
T ss_pred ccCchhhHhhcCCCCCcceeECCCCC
Confidence 3211234444 233333455677775
No 386
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.18 E-value=2.5 Score=43.65 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=22.2
Q ss_pred cceeeCCCCCEEEEEEeccCC-----CCCCceeEEEEEEcCCC
Q 006979 194 ADGIFDPRFNRYVTVREDRRQ-----DALNSTTEIVAIALNGQ 231 (623)
Q Consensus 194 ~d~~~sPdG~~l~~v~~~~~~-----~~~~~~~~L~~idl~~g 231 (623)
..+.|.||| .|++..-+... .+......|.+++.++.
T Consensus 117 ~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~ 158 (331)
T PF07995_consen 117 GGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGS 158 (331)
T ss_dssp EEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSS
T ss_pred ccccCCCCC-cEEEEeCCCCCcccccccccccceEEEecccCc
Confidence 357899999 55555544432 22344678889987754
No 387
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.17 E-value=3.3 Score=41.90 Aligned_cols=141 Identities=6% Similarity=0.016 Sum_probs=77.2
Q ss_pred eEEEEEEcCCCCcccceecccC---CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCC
Q 006979 221 TEIVAIALNGQNIQEPKVLVSG---SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP 297 (623)
Q Consensus 221 ~~L~~idl~~g~~~~~~~l~~~---~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~ 297 (623)
..||++|+.+-+. ...+..- ..-......++++.+|||-... +..+|+++|+..-. ....+...+
T Consensus 106 e~IyIydI~~Mkl--LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~------t~GdV~l~d~~nl~---~v~~I~aH~- 173 (391)
T KOG2110|consen 106 ESIYIYDIKDMKL--LHTIETTPPNPKGLCALSPNNANCYLAYPGST------TSGDVVLFDTINLQ---PVNTINAHK- 173 (391)
T ss_pred ccEEEEeccccee--ehhhhccCCCccceEeeccCCCCceEEecCCC------CCceEEEEEcccce---eeeEEEecC-
Confidence 3599999987542 2223221 1112223445556699987522 35679999987652 333444444
Q ss_pred CccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCC-eEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEE
Q 006979 298 TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNN-EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR 376 (623)
Q Consensus 298 ~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~-~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~ 376 (623)
..+.-.++++||.++..+.. .|. -|-++...+| +..+.-.+-.. ...-++.|.+ +++ ++..+.
T Consensus 174 ---~~lAalafs~~G~llATASe-KGT-VIRVf~v~~G~kl~eFRRG~~~-------~~IySL~Fs~---ds~-~L~~sS 237 (391)
T KOG2110|consen 174 ---GPLAALAFSPDGTLLATASE-KGT-VIRVFSVPEGQKLYEFRRGTYP-------VSIYSLSFSP---DSQ-FLAASS 237 (391)
T ss_pred ---CceeEEEECCCCCEEEEecc-Cce-EEEEEEcCCccEeeeeeCCcee-------eEEEEEEECC---CCC-eEEEec
Confidence 56778899999996655544 343 2333333333 33333222111 1122344542 555 555555
Q ss_pred ECCeEEEEEEeCC
Q 006979 377 QNGRSYLGILDDF 389 (623)
Q Consensus 377 ~~g~~~L~~~d~~ 389 (623)
..+.-|++.++..
T Consensus 238 ~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 238 NTETVHIFKLEKV 250 (391)
T ss_pred CCCeEEEEEeccc
Confidence 6788999988754
No 388
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=93.15 E-value=7.7 Score=36.50 Aligned_cols=155 Identities=12% Similarity=0.119 Sum_probs=87.1
Q ss_pred EEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCC---CCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 006979 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDY---GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (623)
Q Consensus 150 ~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~---~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i 226 (623)
|.|+ +.++.+...+..|..+|+.-. ..+..|.... +....-+...+.+|.|+.|+--.++ ..-.++
T Consensus 190 yswn-~~m~~sgsqdktirfwdlrv~-~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~d---------ssc~ly 258 (350)
T KOG0641|consen 190 YSWN-GAMFASGSQDKTIRFWDLRVN-SCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHAD---------SSCMLY 258 (350)
T ss_pred EEec-CcEEEccCCCceEEEEeeecc-ceeeeccCcccCCCcccceeEEEEECCCcceeeeccCC---------CceEEE
Confidence 4443 345555556666777777533 2344444331 1122345677899999876654333 446677
Q ss_pred EcCCCCcccceecc-cCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCcee-eeEEEcCCCCCccccCc
Q 006979 227 ALNGQNIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVY-KRVCVAGFDPTIVESPT 304 (623)
Q Consensus 227 dl~~g~~~~~~~l~-~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~ 304 (623)
|+.++. ..+-. ....-+...+|||---+|.-.+.|. .|.+-|+.+.-.-+ ...++.+.. ...-
T Consensus 259 dirg~r---~iq~f~phsadir~vrfsp~a~yllt~syd~--------~ikltdlqgdla~el~~~vv~ehk----dk~i 323 (350)
T KOG0641|consen 259 DIRGGR---MIQRFHPHSADIRCVRFSPGAHYLLTCSYDM--------KIKLTDLQGDLAHELPIMVVAEHK----DKAI 323 (350)
T ss_pred EeeCCc---eeeeeCCCccceeEEEeCCCceEEEEecccc--------eEEEeecccchhhcCceEEEEecc----CceE
Confidence 888887 43332 2222234578999887776555442 37888887652101 122333333 2345
Q ss_pred CceeCCCCcEEEEEeCCCCeeeEEEEe
Q 006979 305 EPKWSSKGELFFVTDRKNGFWNLHKWI 331 (623)
Q Consensus 305 ~~~ws~DG~l~~~~~~~~g~~~L~~~d 331 (623)
+.+|.|.. +-|++...+....||.++
T Consensus 324 ~~rwh~~d-~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 324 QCRWHPQD-FSFISSSADKTATLWALN 349 (350)
T ss_pred EEEecCcc-ceeeeccCcceEEEeccC
Confidence 78999976 667765534455666553
No 389
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=93.14 E-value=3.1 Score=40.99 Aligned_cols=96 Identities=17% Similarity=0.264 Sum_probs=57.9
Q ss_pred CCcccceeeCCCCCEE-EEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCC
Q 006979 243 SDFYAFPRMDPRGERM-AWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK 321 (623)
Q Consensus 243 ~~~~~~p~wSPDG~~l-a~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~ 321 (623)
.|.+...+|||.-..+ +--+||. . +.+++++..+.... +.....+ .-+....|+.||..+|...-
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~------t--VR~wevq~~g~~~~-ka~~~~~----~PvL~v~WsddgskVf~g~~- 92 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDG------T--VRIWEVQNSGQLVP-KAQQSHD----GPVLDVCWSDDGSKVFSGGC- 92 (347)
T ss_pred ccchheeEeccccCceEEecccCC------c--eEEEEEecCCcccc-hhhhccC----CCeEEEEEccCCceEEeecc-
Confidence 4556778899944333 3445653 3 44445544332111 1112222 34567899999997777665
Q ss_pred CCeeeEEEEecCCCeEEEEeecccccccccccc
Q 006979 322 NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF 354 (623)
Q Consensus 322 ~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~ 354 (623)
++... .+|+.+++..++-..+..+....|+.
T Consensus 93 Dk~~k--~wDL~S~Q~~~v~~Hd~pvkt~~wv~ 123 (347)
T KOG0647|consen 93 DKQAK--LWDLASGQVSQVAAHDAPVKTCHWVP 123 (347)
T ss_pred CCceE--EEEccCCCeeeeeecccceeEEEEec
Confidence 45544 46888998888887766666667765
No 390
>COG3150 Predicted esterase [General function prediction only]
Probab=93.08 E-value=0.41 Score=42.95 Aligned_cols=44 Identities=20% Similarity=0.092 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEE
Q 006979 555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGA 602 (623)
Q Consensus 555 ~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v 602 (623)
.....+-++.++++. .| ..++|+|-|.|||.+.++. .+. +++++
T Consensus 42 p~~a~~ele~~i~~~-~~-~~p~ivGssLGGY~At~l~~~~G--irav~ 86 (191)
T COG3150 42 PQQALKELEKAVQEL-GD-ESPLIVGSSLGGYYATWLGFLCG--IRAVV 86 (191)
T ss_pred HHHHHHHHHHHHHHc-CC-CCceEEeecchHHHHHHHHHHhC--Chhhh
Confidence 455555666665553 23 2499999999999999998 553 45544
No 391
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=93.07 E-value=2.7 Score=40.27 Aligned_cols=135 Identities=10% Similarity=-0.002 Sum_probs=76.0
Q ss_pred eEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCcc
Q 006979 221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 300 (623)
Q Consensus 221 ~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~ 300 (623)
..+.+.|..+|.. ++.|... ..+...+.|+||+.|... + ++.|-..|...-+.+.... .+
T Consensus 165 ~tVRLWD~rTgt~--v~sL~~~-s~VtSlEvs~dG~ilTia--~-------gssV~Fwdaksf~~lKs~k----~P---- 224 (334)
T KOG0278|consen 165 KTVRLWDHRTGTE--VQSLEFN-SPVTSLEVSQDGRILTIA--Y-------GSSVKFWDAKSFGLLKSYK----MP---- 224 (334)
T ss_pred CceEEEEeccCcE--EEEEecC-CCCcceeeccCCCEEEEe--c-------CceeEEeccccccceeecc----Cc----
Confidence 3466678888862 3444332 335667899999976533 2 3335556665443211111 11
Q ss_pred ccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCe
Q 006979 301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 380 (623)
Q Consensus 301 ~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~ 380 (623)
..+......|+-.+|+ +.. ....+|++|-.+++.+.... ...++.. ....|. .++.+|.+..++|.
T Consensus 225 ~nV~SASL~P~k~~fV-aGg--ed~~~~kfDy~TgeEi~~~n-kgh~gpV------hcVrFS----PdGE~yAsGSEDGT 290 (334)
T KOG0278|consen 225 CNVESASLHPKKEFFV-AGG--EDFKVYKFDYNTGEEIGSYN-KGHFGPV------HCVRFS----PDGELYASGSEDGT 290 (334)
T ss_pred cccccccccCCCceEE-ecC--cceEEEEEeccCCceeeecc-cCCCCce------EEEEEC----CCCceeeccCCCce
Confidence 3455667788864444 432 23458899988987665531 1122211 122333 33457777778999
Q ss_pred EEEEEEeCC
Q 006979 381 SYLGILDDF 389 (623)
Q Consensus 381 ~~L~~~d~~ 389 (623)
-+||...+.
T Consensus 291 irlWQt~~~ 299 (334)
T KOG0278|consen 291 IRLWQTTPG 299 (334)
T ss_pred EEEEEecCC
Confidence 999887653
No 392
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=92.92 E-value=4 Score=42.82 Aligned_cols=169 Identities=12% Similarity=0.073 Sum_probs=96.1
Q ss_pred EEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 006979 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (623)
Q Consensus 150 ~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~ 229 (623)
|.+.+..|+-+. ..|.|.+..+.++ ...+.++.+. .....-..+||-.++++.+..+. +.+-++|..
T Consensus 129 YN~~DeyiAsvs-~gGdiiih~~~t~-~~tt~f~~~s---gqsvRll~ys~skr~lL~~asd~--------G~VtlwDv~ 195 (673)
T KOG4378|consen 129 YNNTDEYIASVS-DGGDIIIHGTKTK-QKTTTFTIDS---GQSVRLLRYSPSKRFLLSIASDK--------GAVTLWDVQ 195 (673)
T ss_pred ecCCcceeEEec-cCCcEEEEecccC-ccccceecCC---CCeEEEeecccccceeeEeeccC--------CeEEEEecc
Confidence 333333443332 3466888888776 4455666541 22233466899889888877655 456677887
Q ss_pred CCCcccceecccC----CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcC
Q 006979 230 GQNIQEPKVLVSG----SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE 305 (623)
Q Consensus 230 ~g~~~~~~~l~~~----~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (623)
+.. + +..- ..-..+.+|||-...|...- - -...|+++|...... ..++... .-...
T Consensus 196 g~s---p--~~~~~~~HsAP~~gicfspsne~l~vsV-G------~Dkki~~yD~~s~~s--~~~l~y~------~Plst 255 (673)
T KOG4378|consen 196 GMS---P--IFHASEAHSAPCRGICFSPSNEALLVSV-G------YDKKINIYDIRSQAS--TDRLTYS------HPLST 255 (673)
T ss_pred CCC---c--ccchhhhccCCcCcceecCCccceEEEe-c------ccceEEEeecccccc--cceeeec------CCcce
Confidence 643 2 2111 12244567999877664332 1 134599999875532 2333332 23568
Q ss_pred ceeCCCCcEEEEEeCCCCeeeEEEEecCCCe--EEEEeecccccccccccc
Q 006979 306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNE--VLAIYSLDAEFSRPLWVF 354 (623)
Q Consensus 306 ~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~--~~~l~~~~~~~~~~~w~~ 354 (623)
++|+++|.+++.... ..+|+.||+.+.+ ...+...+..+....|..
T Consensus 256 vaf~~~G~~L~aG~s---~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 256 VAFSECGTYLCAGNS---KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred eeecCCceEEEeecC---CceEEEEecccCCCCceEeeecccceeEEEeee
Confidence 899999964444433 3478889886643 233333444455555654
No 393
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=92.89 E-value=0.58 Score=49.19 Aligned_cols=86 Identities=7% Similarity=-0.015 Sum_probs=55.0
Q ss_pred CHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-
Q 006979 514 NLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL- 592 (623)
Q Consensus 514 ~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~- 592 (623)
+...++|.. |+-|...|..--+... ...+.++ .+|.+..+...++. +-++ +-++|+|+||-+++.++
T Consensus 120 RS~V~~Ll~-g~dVYl~DW~~p~~vp-----~~~~~f~---ldDYi~~l~~~i~~--~G~~-v~l~GvCqgG~~~laa~A 187 (406)
T TIGR01849 120 RSTVEALLP-DHDVYITDWVNARMVP-----LSAGKFD---LEDYIDYLIEFIRF--LGPD-IHVIAVCQPAVPVLAAVA 187 (406)
T ss_pred HHHHHHHhC-CCcEEEEeCCCCCCCc-----hhcCCCC---HHHHHHHHHHHHHH--hCCC-CcEEEEchhhHHHHHHHH
Confidence 457888888 9999999976422100 0123343 45554433332222 2244 99999999999977554
Q ss_pred c-----CCCceeEEEecccCCCHH
Q 006979 593 A-----FRDTFKAGASLYGVSIPV 611 (623)
Q Consensus 593 ~-----~~~~f~a~v~~~g~~d~~ 611 (623)
. +|...+..+.+.++.|..
T Consensus 188 l~a~~~~p~~~~sltlm~~PID~~ 211 (406)
T TIGR01849 188 LMAENEPPAQPRSMTLMGGPIDAR 211 (406)
T ss_pred HHHhcCCCCCcceEEEEecCccCC
Confidence 2 256789999999988864
No 394
>PRK13615 lipoprotein LpqB; Provisional
Probab=92.75 E-value=8.7 Score=42.34 Aligned_cols=160 Identities=10% Similarity=0.067 Sum_probs=84.5
Q ss_pred cceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCce
Q 006979 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 273 (623)
Q Consensus 194 ~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~ 273 (623)
..+..|+||+.++++..+ ..|++-... +. .+.+..+. -...|.|+++| ++ |+..+.. ..
T Consensus 337 ~s~avS~dg~~~A~v~~~---------~~l~vg~~~-~~---~~~~~~~~-~Lt~PS~d~~g-~v-Wtv~~g~-----~~ 395 (557)
T PRK13615 337 DAATLSADGRQAAVRNAS---------GVWSVGDGD-RD---AVLLDTRP-GLVAPSLDAQG-YV-WSTPASD-----PR 395 (557)
T ss_pred ccceEcCCCceEEEEcCC---------ceEEEecCC-Cc---ceeeccCC-ccccCcCcCCC-CE-EEEeCCC-----ce
Confidence 457899999999888331 345555444 33 34454443 35679999999 55 5543332 22
Q ss_pred EEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEE--EEecCCCeEEEE-e------ec
Q 006979 274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLH--KWIESNNEVLAI-Y------SL 343 (623)
Q Consensus 274 ~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~--~~d~~~~~~~~l-~------~~ 343 (623)
.+.. ....+. ...+......+ ..+..++-|+||. ++++.+. .|..+|+ .+--.++..+.| + ..
T Consensus 396 ~l~~--~~~~G~--~~~v~v~~~~~--~~I~~lrvSrDG~R~Avi~~~-~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~ 468 (557)
T PRK13615 396 GLVA--WGPDGV--GHPVAVSWTAT--GRVVSLEVARDGARVLVQLET-GAGPQLLVASIVRDGGVPTSLTTTPLELLAS 468 (557)
T ss_pred EEEE--ecCCCc--eEEeeccccCC--CeeEEEEeCCCccEEEEEEec-CCCCEEEEEEEEeCCCcceEeeeccEEcccC
Confidence 2222 322222 11111111101 4578899999998 7777664 3444444 232234434445 2 11
Q ss_pred ccccccccccccCcceeEEeecCCCCEEEEEE-EECCeEEEEEEeCCCCcee
Q 006979 344 DAEFSRPLWVFGINSYEIIQSHGEKNLIACSY-RQNGRSYLGILDDFGHSLS 394 (623)
Q Consensus 344 ~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~-~~~g~~~L~~~d~~~~~~~ 394 (623)
........|. ++..|++.. ..++...++++.+.+...+
T Consensus 469 l~~v~sl~W~-------------~~~~laVl~~~~~~~~~v~~v~v~g~~~~ 507 (557)
T PRK13615 469 PGTPLDATWV-------------DELDVATLTLAPDGERQVELHQVGGPSKD 507 (557)
T ss_pred cCcceeeEEc-------------CCCEEEEEeccCCCCceEEEEECCCcccc
Confidence 1123333454 455665554 3445567888888754433
No 395
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=92.58 E-value=4.9 Score=39.85 Aligned_cols=88 Identities=13% Similarity=0.078 Sum_probs=53.2
Q ss_pred EEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccce
Q 006979 158 IFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK 237 (623)
Q Consensus 158 ~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~ 237 (623)
+.+...+|.|.+++.+.- ....-+... ..++++.+++|.|+.-+-|..| ..|-.+++-.|+...+.
T Consensus 100 LlS~sdDG~i~iw~~~~W-~~~~slK~H----~~~Vt~lsiHPS~KLALsVg~D---------~~lr~WNLV~Gr~a~v~ 165 (362)
T KOG0294|consen 100 LLSGSDDGHIIIWRVGSW-ELLKSLKAH----KGQVTDLSIHPSGKLALSVGGD---------QVLRTWNLVRGRVAFVL 165 (362)
T ss_pred eeeecCCCcEEEEEcCCe-EEeeeeccc----ccccceeEecCCCceEEEEcCC---------ceeeeehhhcCccceee
Confidence 445557888888887531 112222222 3458899999999865555444 45666677666532233
Q ss_pred ecccCCCcccceeeCCCCCEEEEEE
Q 006979 238 VLVSGSDFYAFPRMDPRGERMAWIE 262 (623)
Q Consensus 238 ~l~~~~~~~~~p~wSPDG~~la~~~ 262 (623)
.|-..+. ...|+|.|.+.+.+.
T Consensus 166 ~L~~~at---~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 166 NLKNKAT---LVSWSPQGDHFVVSG 187 (362)
T ss_pred ccCCcce---eeEEcCCCCEEEEEe
Confidence 3433332 367999999877665
No 396
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=92.49 E-value=0.17 Score=48.43 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=66.6
Q ss_pred CCCEEEEecCCCCCcccCcCCHHhHHHHcCc-----eEEEEECCCCCCCCchhHHHhhcc-----------CCccchHHH
Q 006979 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRG-----WAFVDVNYGGSTGYGREFRERLLG-----------RWGIVDVND 557 (623)
Q Consensus 494 ~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G-----~~v~~~d~rGs~~~g~~~~~~~~~-----------~~g~~~~~D 557 (623)
..|+| ++||. +.....+..+...+...+ -.++.+|--|+-..-..+.+.... .-+..-..=
T Consensus 45 ~iPTI-fIhGs--gG~asS~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~~~s~w 121 (288)
T COG4814 45 AIPTI-FIHGS--GGTASSLNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGLDQSKW 121 (288)
T ss_pred ccceE-EEecC--CCChhHHHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchhhHHHH
Confidence 46765 48998 334445666666666655 456777776753332222221110 011111233
Q ss_pred HHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cC------CCceeEEEecccCCC
Q 006979 558 CCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AF------RDTFKAGASLYGVSI 609 (623)
Q Consensus 558 ~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~------~~~f~a~v~~~g~~d 609 (623)
+..++.||.++..+ .++-++||||||......+ .+ | .+.-.|++.|..+
T Consensus 122 lk~~msyL~~~Y~i--~k~n~VGhSmGg~~~~~Y~~~yg~dks~P-~lnK~V~l~gpfN 177 (288)
T COG4814 122 LKKAMSYLQKHYNI--PKFNAVGHSMGGLGLTYYMIDYGDDKSLP-PLNKLVSLAGPFN 177 (288)
T ss_pred HHHHHHHHHHhcCC--ceeeeeeeccccHHHHHHHHHhcCCCCCc-chhheEEeccccc
Confidence 66788899998766 6899999999999888776 43 3 3556666666555
No 397
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.28 E-value=20 Score=39.16 Aligned_cols=83 Identities=13% Similarity=0.029 Sum_probs=42.4
Q ss_pred ceeeCCCCCEEEEEEeccCC---------CCCCceeEEEEEEcCCCCcccceecccCC----CcccceeeC----CCCC-
Q 006979 195 DGIFDPRFNRYVTVREDRRQ---------DALNSTTEIVAIALNGQNIQEPKVLVSGS----DFYAFPRMD----PRGE- 256 (623)
Q Consensus 195 d~~~sPdG~~l~~v~~~~~~---------~~~~~~~~L~~idl~~g~~~~~~~l~~~~----~~~~~p~wS----PDG~- 256 (623)
.+.+++.+..|++-..+... .+....+.|+.+|+++|+.....++.... +..+.|... -||+
T Consensus 221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~ 300 (488)
T cd00216 221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP 300 (488)
T ss_pred CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence 45666666666665433210 01123368999999999843222332211 122223332 2444
Q ss_pred -EEEEEEecCCCCCCCceEEEEEEecCCC
Q 006979 257 -RMAWIEWHHPNMPWDKAELWVGYISENG 284 (623)
Q Consensus 257 -~la~~~~~~~~~p~~~~~L~v~d~~~~~ 284 (623)
.++|+... ...|+.+|..++.
T Consensus 301 ~~~V~~g~~-------~G~l~ald~~tG~ 322 (488)
T cd00216 301 VPAIVHAPK-------NGFFYVLDRTTGK 322 (488)
T ss_pred eEEEEEECC-------CceEEEEECCCCc
Confidence 34455421 3459999998874
No 398
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=92.10 E-value=0.46 Score=47.62 Aligned_cols=153 Identities=10% Similarity=0.025 Sum_probs=87.6
Q ss_pred cceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCce
Q 006979 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 273 (623)
Q Consensus 194 ~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~ 273 (623)
....++|--..|+.+.... ..|+++|+..+.. ++.+.-+- -.+..+|+| .. .-|+..++ ..
T Consensus 191 ~svkfNpvETsILas~~sD--------rsIvLyD~R~~~P--l~KVi~~m-RTN~IswnP-ea-fnF~~a~E------D~ 251 (433)
T KOG0268|consen 191 SSVKFNPVETSILASCASD--------RSIVLYDLRQASP--LKKVILTM-RTNTICWNP-EA-FNFVAANE------DH 251 (433)
T ss_pred eEEecCCCcchheeeeccC--------CceEEEecccCCc--cceeeeec-cccceecCc-cc-cceeeccc------cc
Confidence 3466788777777776432 5699999987652 23332222 134578999 44 34555454 33
Q ss_pred EEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEe--ecccccccc
Q 006979 274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY--SLDAEFSRP 350 (623)
Q Consensus 274 ~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~--~~~~~~~~~ 350 (623)
.||.+|+..-.. ...+..+.- -.+-++.+||-|+ ++-.+- +..-+||-++ .+.-+.+. .....+-..
T Consensus 252 nlY~~DmR~l~~--p~~v~~dhv----sAV~dVdfsptG~Efvsgsy--DksIRIf~~~--~~~SRdiYhtkRMq~V~~V 321 (433)
T KOG0268|consen 252 NLYTYDMRNLSR--PLNVHKDHV----SAVMDVDFSPTGQEFVSGSY--DKSIRIFPVN--HGHSRDIYHTKRMQHVFCV 321 (433)
T ss_pred cceehhhhhhcc--cchhhcccc----eeEEEeccCCCcchhccccc--cceEEEeecC--CCcchhhhhHhhhheeeEE
Confidence 499998764421 122222322 3456788999998 443332 2445666544 45445554 222334445
Q ss_pred cccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeC
Q 006979 351 LWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (623)
Q Consensus 351 ~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~ 388 (623)
.|+. |. .++++..+++.-+||+-..
T Consensus 322 k~S~------------Ds-kyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 322 KYSM------------DS-KYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred EEec------------cc-cEEEecCCCcceeeeecch
Confidence 6653 44 4666666788888987764
No 399
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=92.07 E-value=4.5 Score=41.84 Aligned_cols=159 Identities=13% Similarity=0.064 Sum_probs=91.0
Q ss_pred eEEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 006979 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (623)
Q Consensus 149 ~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl 228 (623)
+|.+..+.++-+...++.|.++|+.++...++..... -..-++..+|.|-+.+|+++.... .++.+.|+
T Consensus 234 ~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a---h~~~vn~~~fnp~~~~ilAT~S~D--------~tV~LwDl 302 (422)
T KOG0264|consen 234 AWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA---HSAEVNCVAFNPFNEFILATGSAD--------KTVALWDL 302 (422)
T ss_pred hccccchhhheeecCCCeEEEEEcCCCCCCCcccccc---cCCceeEEEeCCCCCceEEeccCC--------CcEEEeec
Confidence 4555555566666678889999988520122222221 123356678999888888875522 66888998
Q ss_pred CCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCce--------eeeE--EEcCCCCC
Q 006979 229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV--------YKRV--CVAGFDPT 298 (623)
Q Consensus 229 ~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~--------~~~~--~~~~~~~~ 298 (623)
..-.. .+..+....+-+.+..|||+-..|.-.+.. ..+|.+.|+..-+.. .... .+-++-
T Consensus 303 RnL~~-~lh~~e~H~dev~~V~WSPh~etvLASSg~-------D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH-- 372 (422)
T KOG0264|consen 303 RNLNK-PLHTFEGHEDEVFQVEWSPHNETVLASSGT-------DRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGH-- 372 (422)
T ss_pred hhccc-CceeccCCCcceEEEEeCCCCCceeEeccc-------CCcEEEEeccccccccChhhhccCCcceeEEecCc--
Confidence 76431 133444445566778999999888655432 234777777643210 0111 111211
Q ss_pred ccccCcCceeCCCCc-EEEEEeCCCCeeeEEEE
Q 006979 299 IVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKW 330 (623)
Q Consensus 299 ~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~ 330 (623)
...+..+.|.|.-- ++..... ++.-+||..
T Consensus 373 -~~kV~DfsWnp~ePW~I~Svae-DN~LqIW~~ 403 (422)
T KOG0264|consen 373 -TAKVSDFSWNPNEPWTIASVAE-DNILQIWQM 403 (422)
T ss_pred -ccccccccCCCCCCeEEEEecC-CceEEEeec
Confidence 14577888988866 3333333 456667654
No 400
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.02 E-value=8.3 Score=38.82 Aligned_cols=121 Identities=12% Similarity=0.087 Sum_probs=63.8
Q ss_pred CeeecceeeCCCC----CEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCC-----C---------------c
Q 006979 190 LVSYADGIFDPRF----NRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS-----D---------------F 245 (623)
Q Consensus 190 ~~~~~d~~~sPdG----~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~-----~---------------~ 245 (623)
....++++++... +..+|+.+... ..|.++|+.+++ ..++.... + .
T Consensus 60 ~s~lndl~VD~~~~~~~~~~aYItD~~~-------~glIV~dl~~~~---s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg 129 (287)
T PF03022_consen 60 DSFLNDLVVDVRDGNCDDGFAYITDSGG-------PGLIVYDLATGK---SWRVLHNSFSPDPDAGPFTIGGESFQWPDG 129 (287)
T ss_dssp CGGEEEEEEECTTTTS-SEEEEEEETTT-------CEEEEEETTTTE---EEEEETCGCTTS-SSEEEEETTEEEEETTS
T ss_pred ccccceEEEEccCCCCcceEEEEeCCCc-------CcEEEEEccCCc---EEEEecCCcceeccccceeccCceEecCCC
Confidence 3567788877632 36788776432 479999999987 44432220 0 0
Q ss_pred cccee---eCCCCCEEEEEEecCCCCCCCceEEEEEEecC---CCc---e---eeeEEEcCCCCCccccCcCceeCCCCc
Q 006979 246 YAFPR---MDPRGERMAWIEWHHPNMPWDKAELWVGYISE---NGD---V---YKRVCVAGFDPTIVESPTEPKWSSKGE 313 (623)
Q Consensus 246 ~~~p~---wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~---~~~---~---~~~~~~~~~~~~~~~~~~~~~ws~DG~ 313 (623)
..+.+ .+|||++|||.... ...+|.++.+- ... . ...+.+-... ........+++|.
T Consensus 130 ~~gial~~~~~d~r~LYf~~ls-------s~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~----~~s~g~~~D~~G~ 198 (287)
T PF03022_consen 130 IFGIALSPISPDGRWLYFHPLS-------SRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKG----SQSDGMAIDPNGN 198 (287)
T ss_dssp EEEEEE-TTSTTS-EEEEEETT--------SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE-------SECEEEEETTTE
T ss_pred ccccccCCCCCCccEEEEEeCC-------CCcEEEEEHHHhhCccccccccccccceeccccC----CCCceEEECCCCc
Confidence 11122 35699999998633 34578776431 110 0 0111221111 1223456667775
Q ss_pred EEEEEeCCCCeeeEEEEecCC
Q 006979 314 LFFVTDRKNGFWNLHKWIESN 334 (623)
Q Consensus 314 l~~~~~~~~g~~~L~~~d~~~ 334 (623)
|||. +. ....|+++++.+
T Consensus 199 ly~~-~~--~~~aI~~w~~~~ 216 (287)
T PF03022_consen 199 LYFT-DV--EQNAIGCWDPDG 216 (287)
T ss_dssp EEEE-EC--CCTEEEEEETTT
T ss_pred EEEe-cC--CCCeEEEEeCCC
Confidence 5554 43 345788898876
No 401
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=91.99 E-value=16 Score=37.31 Aligned_cols=113 Identities=12% Similarity=0.073 Sum_probs=67.2
Q ss_pred CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCC
Q 006979 243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN 322 (623)
Q Consensus 243 ~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~ 322 (623)
.+.+....|++ -..++-.+|||. |.+.|+..++. ...+... ..+..+..+|..+|+.....
T Consensus 260 t~~Vs~V~w~d-~~v~yS~SwDHT--------Ik~WDletg~~--~~~~~~~------ksl~~i~~~~~~~Ll~~gss-- 320 (423)
T KOG0313|consen 260 TEPVSSVVWSD-ATVIYSVSWDHT--------IKVWDLETGGL--KSTLTTN------KSLNCISYSPLSKLLASGSS-- 320 (423)
T ss_pred ccceeeEEEcC-CCceEeecccce--------EEEEEeecccc--eeeeecC------cceeEeecccccceeeecCC--
Confidence 35566778988 445666778875 88889988853 2222222 24456677787665544322
Q ss_pred CeeeEEEEecCCCeEE----EEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEe
Q 006979 323 GFWNLHKWIESNNEVL----AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 387 (623)
Q Consensus 323 g~~~L~~~d~~~~~~~----~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d 387 (623)
..+|-++||.++.-. .+.....-+....|.+ .+...+++..-++...||-+.
T Consensus 321 -dr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp------------~~~~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 321 -DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSP------------TNEFQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred -CCceeecCCCCCCCceeEEeeecchhhhhheecCC------------CCceEEEEEecCCeEEEEEec
Confidence 246777898776422 2222222344445554 566677777777777777544
No 402
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.89 E-value=12 Score=35.75 Aligned_cols=135 Identities=13% Similarity=0.156 Sum_probs=64.3
Q ss_pred eeeCCCCCEEEEEE-e-cCCC-CCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCee
Q 006979 249 PRMDPRGERMAWIE-W-HHPN-MPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFW 325 (623)
Q Consensus 249 p~wSPDG~~la~~~-~-~~~~-~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~ 325 (623)
-..+||||+ |.. + +.+. ...-.+.||..-+... ..++.+.- .......|+.|-+.+|..+. -..
T Consensus 114 gkvdP~Gry--y~GtMad~~~~le~~~g~Ly~~~~~h~-----v~~i~~~v----~IsNgl~Wd~d~K~fY~iDs--ln~ 180 (310)
T KOG4499|consen 114 GKVDPDGRY--YGGTMADFGDDLEPIGGELYSWLAGHQ-----VELIWNCV----GISNGLAWDSDAKKFYYIDS--LNY 180 (310)
T ss_pred CccCCCCce--eeeeeccccccccccccEEEEeccCCC-----ceeeehhc----cCCccccccccCcEEEEEcc--Cce
Confidence 457999997 443 2 2111 0011455665443322 22333222 34467899999884444444 234
Q ss_pred eE--EEEecCCCe---EEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCce-eecccC
Q 006979 326 NL--HKWIESNNE---VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLLDIP 399 (623)
Q Consensus 326 ~L--~~~d~~~~~---~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~-~~lt~~ 399 (623)
.+ |.+|..+|. .+.|..... ..+.=++..+.+.+- ..+.||++.-.. ..++++|+.+|++ ..+-.|
T Consensus 181 ~V~a~dyd~~tG~~snr~~i~dlrk--~~~~e~~~PDGm~ID----~eG~L~Va~~ng--~~V~~~dp~tGK~L~eiklP 252 (310)
T KOG4499|consen 181 EVDAYDYDCPTGDLSNRKVIFDLRK--SQPFESLEPDGMTID----TEGNLYVATFNG--GTVQKVDPTTGKILLEIKLP 252 (310)
T ss_pred EEeeeecCCCcccccCcceeEEecc--CCCcCCCCCCcceEc----cCCcEEEEEecC--cEEEEECCCCCcEEEEEEcC
Confidence 45 666777764 234432211 011111222333332 233455554333 4588899988865 334444
Q ss_pred CcceE
Q 006979 400 FTDID 404 (623)
Q Consensus 400 ~~~v~ 404 (623)
-..+.
T Consensus 253 t~qit 257 (310)
T KOG4499|consen 253 TPQIT 257 (310)
T ss_pred CCceE
Confidence 33333
No 403
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=91.87 E-value=3.3 Score=46.13 Aligned_cols=144 Identities=15% Similarity=0.245 Sum_probs=85.2
Q ss_pred ceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCCCCcEEEEe
Q 006979 93 GTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHS 171 (623)
Q Consensus 93 ~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~~~~l~~~d 171 (623)
++.++= +..|||.+..+. . |-+.... |+++..++..+. .+--|-+..+....+++.+..-.+|-+..
T Consensus 1029 GidfDC~e~mvyWtDv~g~----S-I~rasL~-G~Ep~ti~n~~L------~SPEGiAVDh~~Rn~ywtDS~lD~IevA~ 1096 (1289)
T KOG1214|consen 1029 GIDFDCRERMVYWTDVAGR----S-ISRASLE-GAEPETIVNSGL------ISPEGIAVDHIRRNMYWTDSVLDKIEVAL 1096 (1289)
T ss_pred eeecccccceEEEeecCCC----c-ccccccc-CCCCceeecccC------CCccceeeeeccceeeeeccccchhheee
Confidence 344433 667899886643 2 3333333 345655554431 11113345555667888865555677777
Q ss_pred CCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc-cCCCccccee
Q 006979 172 IDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-SGSDFYAFPR 250 (623)
Q Consensus 172 ~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~-~~~~~~~~p~ 250 (623)
|++. ..+.|-... -..-.....+|-++.|+|+.+++.+ -.|-..++++.. .+.|. .+-...++..
T Consensus 1097 LdG~--~rkvLf~td---LVNPR~iv~D~~rgnLYwtDWnRen------PkIets~mDG~N---rRilin~DigLPNGLt 1162 (1289)
T KOG1214|consen 1097 LDGS--ERKVLFYTD---LVNPRAIVVDPIRGNLYWTDWNREN------PKIETSSMDGEN---RRILINTDIGLPNGLT 1162 (1289)
T ss_pred cCCc--eeeEEEeec---ccCcceEEeecccCceeeccccccC------CcceeeccCCcc---ceEEeecccCCCCCce
Confidence 7754 444443220 1122345678888899998776533 346677788765 45544 4445567788
Q ss_pred eCCCCCEEEEEE
Q 006979 251 MDPRGERMAWIE 262 (623)
Q Consensus 251 wSPDG~~la~~~ 262 (623)
|.|..|.|.|+.
T Consensus 1163 fdpfs~~LCWvD 1174 (1289)
T KOG1214|consen 1163 FDPFSKLLCWVD 1174 (1289)
T ss_pred eCcccceeeEEe
Confidence 999999999985
No 404
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=91.87 E-value=3.7 Score=43.10 Aligned_cols=133 Identities=11% Similarity=0.048 Sum_probs=78.5
Q ss_pred EEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 006979 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (623)
Q Consensus 150 ~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~ 229 (623)
|.++...++.+...+|.+.+||+.+. .+..--.. .-...-.+.+|||....|++...- .-.|+.+|..
T Consensus 172 ys~skr~lL~~asd~G~VtlwDv~g~--sp~~~~~~--~HsAP~~gicfspsne~l~vsVG~--------Dkki~~yD~~ 239 (673)
T KOG4378|consen 172 YSPSKRFLLSIASDKGAVTLWDVQGM--SPIFHASE--AHSAPCRGICFSPSNEALLVSVGY--------DKKINIYDIR 239 (673)
T ss_pred cccccceeeEeeccCCeEEEEeccCC--Ccccchhh--hccCCcCcceecCCccceEEEecc--------cceEEEeecc
Confidence 44445556666667788999998753 32221111 001123468899988766654331 1569999987
Q ss_pred CCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeC
Q 006979 230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 309 (623)
Q Consensus 230 ~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws 309 (623)
..+. ...|+...-+ ...+|+|+|.+|+--. .+.+|+.+|+..... ...++...+ .++..++|-
T Consensus 240 s~~s--~~~l~y~~Pl-stvaf~~~G~~L~aG~--------s~G~~i~YD~R~~k~--Pv~v~sah~----~sVt~vafq 302 (673)
T KOG4378|consen 240 SQAS--TDRLTYSHPL-STVAFSECGTYLCAGN--------SKGELIAYDMRSTKA--PVAVRSAHD----ASVTRVAFQ 302 (673)
T ss_pred cccc--cceeeecCCc-ceeeecCCceEEEeec--------CCceEEEEecccCCC--CceEeeecc----cceeEEEee
Confidence 6542 3455544443 4478999999876432 256799999986632 233333334 455666665
Q ss_pred CC
Q 006979 310 SK 311 (623)
Q Consensus 310 ~D 311 (623)
+-
T Consensus 303 ~s 304 (673)
T KOG4378|consen 303 PS 304 (673)
T ss_pred ec
Confidence 43
No 405
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=91.80 E-value=0.31 Score=49.99 Aligned_cols=88 Identities=15% Similarity=0.056 Sum_probs=60.6
Q ss_pred HHcCceEEEEECCCCCCC---Cchh-HHHhhccC--CccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-
Q 006979 520 WTSRGWAFVDVNYGGSTG---YGRE-FRERLLGR--WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL- 592 (623)
Q Consensus 520 ~a~~G~~v~~~d~rGs~~---~g~~-~~~~~~~~--~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~- 592 (623)
-.+++-.++-+++|--|. +|.. +..+-.-. .-++...|....+.+|++........|.++|+||||+++.+.=
T Consensus 107 Ap~~~AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRl 186 (492)
T KOG2183|consen 107 APELKALLVFAEHRYYGESLPFGSQSYKDARHLGYLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRL 186 (492)
T ss_pred hHhhCceEEEeehhccccCCCCcchhccChhhhccccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHh
Confidence 345688888888885333 4444 22111111 1235578999999999887556678999999999999999887
Q ss_pred cCCCceeEEEe-cccC
Q 006979 593 AFRDTFKAGAS-LYGV 607 (623)
Q Consensus 593 ~~~~~f~a~v~-~~g~ 607 (623)
.+|.+..++.+ .+|+
T Consensus 187 KYPHiv~GAlAaSAPv 202 (492)
T KOG2183|consen 187 KYPHIVLGALAASAPV 202 (492)
T ss_pred cChhhhhhhhhccCce
Confidence 88987766554 4454
No 406
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.63 E-value=15 Score=36.20 Aligned_cols=197 Identities=11% Similarity=-0.038 Sum_probs=95.0
Q ss_pred eCCEEEEEeCCCC--cEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 006979 153 FGDTVIFSNYKDQ--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (623)
Q Consensus 153 s~d~l~f~~~~~~--~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~ 230 (623)
.++.++-+....| .|..+|+++| +..+-..- ++..+-...+.- +.+|+-..+.. +..+++|.++
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg--~~~~~~~l--~~~~FgEGit~~--~d~l~qLTWk~--------~~~f~yd~~t 119 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETG--KVLQSVPL--PPRYFGEGITIL--GDKLYQLTWKE--------GTGFVYDPNT 119 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTS--SEEEEEE---TTT--EEEEEEE--TTEEEEEESSS--------SEEEEEETTT
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCC--cEEEEEEC--CccccceeEEEE--CCEEEEEEecC--------CeEEEEcccc
Confidence 3456777765555 4999999987 43322221 112222233332 45677666643 6789999986
Q ss_pred CCcccceecccC-CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeC
Q 006979 231 QNIQEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 309 (623)
Q Consensus 231 g~~~~~~~l~~~-~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws 309 (623)
-+. +..+.-. .++ -...||+.|+.. |. ..+|+..|.++-.......+..+.. -...+....|-
T Consensus 120 l~~--~~~~~y~~EGW----GLt~dg~~Li~S--DG------S~~L~~~dP~~f~~~~~i~V~~~g~--pv~~LNELE~i 183 (264)
T PF05096_consen 120 LKK--IGTFPYPGEGW----GLTSDGKRLIMS--DG------SSRLYFLDPETFKEVRTIQVTDNGR--PVSNLNELEYI 183 (264)
T ss_dssp TEE--EEEEE-SSS------EEEECSSCEEEE---S------SSEEEEE-TTT-SEEEEEE-EETTE--E---EEEEEEE
T ss_pred ceE--EEEEecCCcce----EEEcCCCEEEEE--CC------ccceEEECCcccceEEEEEEEECCE--ECCCcEeEEEE
Confidence 431 3333222 221 134688876543 43 3468888866543222222222211 11345667775
Q ss_pred CCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeeccc---ccc-cccc---cccCcceeEEeecCCCCEEEEEEEECCeEE
Q 006979 310 SKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA---EFS-RPLW---VFGINSYEIIQSHGEKNLIACSYRQNGRSY 382 (623)
Q Consensus 310 ~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~---~~~-~~~w---~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~ 382 (623)
||.+| ..-. -...|.++||.+|+......-.. ... ...- ..-.+..++. |+.+.++++- .-++.
T Consensus 184 -~G~Iy-ANVW--~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd---~~~~~l~vTG--K~Wp~ 254 (264)
T PF05096_consen 184 -NGKIY-ANVW--QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYD---PETDRLFVTG--KLWPK 254 (264)
T ss_dssp -TTEEE-EEET--TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEE---TTTTEEEEEE--TT-SE
T ss_pred -cCEEE-EEeC--CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEe---CCCCEEEEEe--CCCCc
Confidence 77544 3333 23479999999998776542100 000 0000 0011233443 2677777775 45677
Q ss_pred EEEEeC
Q 006979 383 LGILDD 388 (623)
Q Consensus 383 L~~~d~ 388 (623)
+|.+.+
T Consensus 255 lyeV~l 260 (264)
T PF05096_consen 255 LYEVKL 260 (264)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 777654
No 407
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=91.63 E-value=0.14 Score=49.39 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=17.6
Q ss_pred CCceEEEEcChHHHHHHHHh
Q 006979 573 EKRLCITGGSAGGYTTLAAL 592 (623)
Q Consensus 573 ~~rv~i~G~S~GG~~~~~~~ 592 (623)
..+|.++|||+||.++-.++
T Consensus 77 ~~~IsfIgHSLGGli~r~al 96 (217)
T PF05057_consen 77 IRKISFIGHSLGGLIARYAL 96 (217)
T ss_pred cccceEEEecccHHHHHHHH
Confidence 36899999999999998776
No 408
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=91.62 E-value=4.7 Score=44.67 Aligned_cols=150 Identities=13% Similarity=0.072 Sum_probs=88.8
Q ss_pred EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (623)
Q Consensus 156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~ 235 (623)
.++++...|+.|-.+|+... ........ ......|..|+|.-...++...+. +.|-..|+.--. ..
T Consensus 147 ~iliSGSQDg~vK~~DlR~~--~S~~t~~~---nSESiRDV~fsp~~~~~F~s~~ds--------G~lqlWDlRqp~-r~ 212 (839)
T KOG0269|consen 147 NILISGSQDGTVKCWDLRSK--KSKSTFRS---NSESIRDVKFSPGYGNKFASIHDS--------GYLQLWDLRQPD-RC 212 (839)
T ss_pred cEEEecCCCceEEEEeeecc--cccccccc---cchhhhceeeccCCCceEEEecCC--------ceEEEeeccCch-hH
Confidence 68888888888888998765 33344332 134567899999554444444333 557777886532 11
Q ss_pred ceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-E
Q 006979 236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-L 314 (623)
Q Consensus 236 ~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l 314 (623)
..+++...+++.-..|+|++.+||--..| . .+.+.++.+... .....+. .- ..+..+.|-|+-+ .
T Consensus 213 ~~k~~AH~GpV~c~nwhPnr~~lATGGRD--K------~vkiWd~t~~~~-~~~~tIn-Ti----apv~rVkWRP~~~~h 278 (839)
T KOG0269|consen 213 EKKLTAHNGPVLCLNWHPNREWLATGGRD--K------MVKIWDMTDSRA-KPKHTIN-TI----APVGRVKWRPARSYH 278 (839)
T ss_pred HHHhhcccCceEEEeecCCCceeeecCCC--c------cEEEEeccCCCc-cceeEEe-ec----ceeeeeeeccCccch
Confidence 34455555666667899999998855422 1 255666665421 1111111 11 3456889999977 4
Q ss_pred EEEEeCCCCeeeEEEEecCC
Q 006979 315 FFVTDRKNGFWNLHKWIESN 334 (623)
Q Consensus 315 ~~~~~~~~g~~~L~~~d~~~ 334 (623)
+..+.- -+...++++|..-
T Consensus 279 LAtcsm-v~dtsV~VWDvrR 297 (839)
T KOG0269|consen 279 LATCSM-VVDTSVHVWDVRR 297 (839)
T ss_pred hhhhhc-cccceEEEEeecc
Confidence 433333 3455677777643
No 409
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.52 E-value=7.9 Score=39.80 Aligned_cols=159 Identities=11% Similarity=-0.032 Sum_probs=80.5
Q ss_pred CceEEEeCC--EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCC---CEEEEEEeccCCCCCCcee
Q 006979 147 GGAFRIFGD--TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRF---NRYVTVREDRRQDALNSTT 221 (623)
Q Consensus 147 ~~~~~~s~d--~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG---~~l~~v~~~~~~~~~~~~~ 221 (623)
+....+++| .|+.+. .+ ...++++++| .....+++. ....++...+|+-|+ ...++....+.+. -
T Consensus 189 V~DL~FS~dgk~lasig-~d-~~~VW~~~~g-~~~a~~t~~--~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~-----v 258 (398)
T KOG0771|consen 189 VKDLDFSPDGKFLASIG-AD-SARVWSVNTG-AALARKTPF--SKDEMFSSCRFSVDNAQETLRLAASQFPGGG-----V 258 (398)
T ss_pred cccceeCCCCcEEEEec-CC-ceEEEEeccC-chhhhcCCc--ccchhhhhceecccCCCceEEEEEecCCCCc-----e
Confidence 445555655 333332 33 4777777776 345556643 335667777777766 3333322222111 2
Q ss_pred EEEEEEcCCC-CcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCcc
Q 006979 222 EIVAIALNGQ-NIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 300 (623)
Q Consensus 222 ~L~~idl~~g-~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~ 300 (623)
.++.+.+-.+ .....++.....+.......|+||+.+|.-..+. .+-+++...-. ....+.... .
T Consensus 259 ~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG--------sVai~~~~~lq---~~~~vk~aH-~-- 324 (398)
T KOG0771|consen 259 RLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG--------SVAIYDAKSLQ---RLQYVKEAH-L-- 324 (398)
T ss_pred eEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC--------cEEEEEeceee---eeEeehhhh-e--
Confidence 2222222222 1000233344444566788999999998776433 26666655431 122222221 1
Q ss_pred ccCcCceeCCCCc-EEEEEeCCCCeeeEEEEe
Q 006979 301 ESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWI 331 (623)
Q Consensus 301 ~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d 331 (623)
..+....|+||.+ +.=++.. ...+|..+.
T Consensus 325 ~~VT~ltF~Pdsr~~~svSs~--~~~~v~~l~ 354 (398)
T KOG0771|consen 325 GFVTGLTFSPDSRYLASVSSD--NEAAVTKLA 354 (398)
T ss_pred eeeeeEEEcCCcCcccccccC--CceeEEEEe
Confidence 4677889999987 4433332 234455443
No 410
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=91.38 E-value=13 Score=37.11 Aligned_cols=99 Identities=13% Similarity=0.195 Sum_probs=59.7
Q ss_pred eeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC-cccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceE
Q 006979 196 GIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN-IQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE 274 (623)
Q Consensus 196 ~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~-~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~ 274 (623)
-+|++|+..++....+ .++.++...+.. .+....|......+....|+|-+.+|.-...|+.
T Consensus 16 hAwn~drt~iAv~~~~---------~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drn-------- 78 (361)
T KOG1523|consen 16 HAWNSDRTQIAVSPNN---------HEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN-------- 78 (361)
T ss_pred eeecCCCceEEeccCC---------ceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCC--------
Confidence 5799999998876554 345555544443 3334555555556777899999988987665542
Q ss_pred EEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEE
Q 006979 275 LWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF 315 (623)
Q Consensus 275 L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~ 315 (623)
-|+.....++.-.+..++...+ .....+.|+|.+..+
T Consensus 79 ayVw~~~~~~~WkptlvLlRiN----rAAt~V~WsP~enkF 115 (361)
T KOG1523|consen 79 AYVWTQPSGGTWKPTLVLLRIN----RAATCVKWSPKENKF 115 (361)
T ss_pred ccccccCCCCeeccceeEEEec----cceeeEeecCcCceE
Confidence 2444442333322333344444 455678999987633
No 411
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=91.34 E-value=1.2 Score=42.07 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=38.3
Q ss_pred HHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhc--C-C------CceeEEEecccCCCH
Q 006979 558 CCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA--F-R------DTFKAGASLYGVSIP 610 (623)
Q Consensus 558 ~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~--~-~------~~f~a~v~~~g~~d~ 610 (623)
+....+|+.++|..| ||+|+|.|+.++.+++. . . -.|+-+|.++|..-.
T Consensus 92 l~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~ 149 (230)
T KOG2551|consen 92 LEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFP 149 (230)
T ss_pred HHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCC
Confidence 555667889999998 89999999999988774 1 1 147888998887655
No 412
>PLN02193 nitrile-specifier protein
Probab=91.21 E-value=26 Score=38.16 Aligned_cols=164 Identities=10% Similarity=-0.039 Sum_probs=75.8
Q ss_pred eeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCc
Q 006979 220 TTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI 299 (623)
Q Consensus 220 ~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~ 299 (623)
.+.+|++|+.+.++..+..+...+.......-...+.+|+...-..... ....++++|+.+. ....+.......
T Consensus 243 ~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~--~~~~~~~yd~~t~----~W~~~~~~~~~~ 316 (470)
T PLN02193 243 YNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA--RLKTLDSYNIVDK----KWFHCSTPGDSF 316 (470)
T ss_pred CccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC--CcceEEEEECCCC----EEEeCCCCCCCC
Confidence 4679999999887532222211111111111112344566554221110 1345788887765 233222111000
Q ss_pred cccCcCceeCCCCcEEEEEeCC-CCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEEC
Q 006979 300 VESPTEPKWSSKGELFFVTDRK-NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN 378 (623)
Q Consensus 300 ~~~~~~~~ws~DG~l~~~~~~~-~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~ 378 (623)
........-.-++++|++.-.. .....++.+|+.+.+++.+..... ...+.. ......+ + +.||+.--..
T Consensus 317 ~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~-~P~~R~---~~~~~~~----~-~~iyv~GG~~ 387 (470)
T PLN02193 317 SIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGV-RPSERS---VFASAAV----G-KHIVIFGGEI 387 (470)
T ss_pred CCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCC-CCCCcc---eeEEEEE----C-CEEEEECCcc
Confidence 0000111122366766554321 123578999999999888753210 000111 1122232 3 3444432211
Q ss_pred ----------C--eEEEEEEeCCCCceeeccc
Q 006979 379 ----------G--RSYLGILDDFGHSLSLLDI 398 (623)
Q Consensus 379 ----------g--~~~L~~~d~~~~~~~~lt~ 398 (623)
+ ...++.+|+.+.+++.+..
T Consensus 388 ~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 388 AMDPLAHVGPGQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred CCccccccCccceeccEEEEEcCcCEEEEccc
Confidence 1 1358999999999987763
No 413
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=91.18 E-value=28 Score=38.63 Aligned_cols=136 Identities=16% Similarity=0.093 Sum_probs=77.2
Q ss_pred eEEEEEEcCCCCcccceecccCCCcccce-eeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCc
Q 006979 221 TEIVAIALNGQNIQEPKVLVSGSDFYAFP-RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI 299 (623)
Q Consensus 221 ~~L~~idl~~g~~~~~~~l~~~~~~~~~p-~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~ 299 (623)
++|+++|.++.+. .+++.+..+-+... .|-|+.++||... +.+ +|.++++.+. .-.++.+..
T Consensus 303 Qnl~l~d~~~l~i--~k~ivG~ndEI~Dm~~lG~e~~~laVAT-Ns~-------~lr~y~~~~~----~c~ii~GH~--- 365 (775)
T KOG0319|consen 303 QNLFLYDEDELTI--VKQIVGYNDEILDMKFLGPEESHLAVAT-NSP-------ELRLYTLPTS----YCQIIPGHT--- 365 (775)
T ss_pred ceEEEEEccccEE--ehhhcCCchhheeeeecCCccceEEEEe-CCC-------ceEEEecCCC----ceEEEeCch---
Confidence 6799999888763 35566555444333 4889999998776 433 3666677665 344777776
Q ss_pred cccCcCce-eCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEe---ecccccccccccccCcceeEEeecCCCCEEEEEE
Q 006979 300 VESPTEPK-WSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY---SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSY 375 (623)
Q Consensus 300 ~~~~~~~~-ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~---~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~ 375 (623)
..+.... | .+| .++.+-.++..-.||++|-...+.-.+. .....++..... ..+-.++++.
T Consensus 366 -e~vlSL~~~-~~g-~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~------------~~~asffvsv 430 (775)
T KOG0319|consen 366 -EAVLSLDVW-SSG-DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGS------------KLGASFFVSV 430 (775)
T ss_pred -hheeeeeec-ccC-cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeec------------ccCccEEEEe
Confidence 3444444 5 355 4444444356778999853332222221 111222222111 1344567777
Q ss_pred EECCeEEEEEEeC
Q 006979 376 RQNGRSYLGILDD 388 (623)
Q Consensus 376 ~~~g~~~L~~~d~ 388 (623)
..+..-.+|-++.
T Consensus 431 S~D~tlK~W~l~~ 443 (775)
T KOG0319|consen 431 SQDCTLKLWDLPK 443 (775)
T ss_pred cCCceEEEecCCC
Confidence 7777778887754
No 414
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=90.77 E-value=19 Score=38.71 Aligned_cols=29 Identities=10% Similarity=-0.008 Sum_probs=20.6
Q ss_pred CCHHHHhccCCccCceEEcCCCcEEEEee
Q 006979 79 LTADVVSGASKRLGGTAVDGHGRLIWLES 107 (623)
Q Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (623)
++++.+.+.-..+.++.+.|++++|..+.
T Consensus 20 f~~~~va~GL~~Pw~maflPDG~llVtER 48 (454)
T TIGR03606 20 FDKKVLLSGLNKPWALLWGPDNQLWVTER 48 (454)
T ss_pred cEEEEEECCCCCceEEEEcCCCeEEEEEe
Confidence 45666666556778899988667777664
No 415
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.75 E-value=16 Score=38.47 Aligned_cols=149 Identities=10% Similarity=0.071 Sum_probs=86.0
Q ss_pred CCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 006979 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (623)
Q Consensus 154 ~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~ 233 (623)
+++++...+..|.+-++|.++. .-.+++-.. .....-..|+|+++.++....|. ..+-..|+++..+
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r-~iLR~~~ah----~apv~~~~f~~~d~t~l~s~sDd--------~v~k~~d~s~a~v 145 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSR-VILRQLYAH----QAPVHVTKFSPQDNTMLVSGSDD--------KVVKYWDLSTAYV 145 (487)
T ss_pred CCeEEEccCCcCcEEEeccccH-HHHHHHhhc----cCceeEEEecccCCeEEEecCCC--------ceEEEEEcCCcEE
Confidence 3477777777888889986532 112333321 12233356899998887766554 2233446666651
Q ss_pred ccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc
Q 006979 234 QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 313 (623)
Q Consensus 234 ~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~ 313 (623)
...+....|.+..-.|+|-...|++...-+ ..|.++|....+ .+......+ ..+..+.+.|.|+
T Consensus 146 --~~~l~~htDYVR~g~~~~~~~hivvtGsYD-------g~vrl~DtR~~~---~~v~elnhg----~pVe~vl~lpsgs 209 (487)
T KOG0310|consen 146 --QAELSGHTDYVRCGDISPANDHIVVTGSYD-------GKVRLWDTRSLT---SRVVELNHG----CPVESVLALPSGS 209 (487)
T ss_pred --EEEecCCcceeEeeccccCCCeEEEecCCC-------ceEEEEEeccCC---ceeEEecCC----CceeeEEEcCCCC
Confidence 123455567766778999988888775322 235666665542 222222233 4466788889887
Q ss_pred EEEEEeCCCCeeeEEEEecCCC
Q 006979 314 LFFVTDRKNGFWNLHKWIESNN 335 (623)
Q Consensus 314 l~~~~~~~~g~~~L~~~d~~~~ 335 (623)
++..+ |...+-.+|+.+|
T Consensus 210 ~iasA----gGn~vkVWDl~~G 227 (487)
T KOG0310|consen 210 LIASA----GGNSVKVWDLTTG 227 (487)
T ss_pred EEEEc----CCCeEEEEEecCC
Confidence 55443 2334556677644
No 416
>PHA02713 hypothetical protein; Provisional
Probab=90.69 E-value=32 Score=38.35 Aligned_cols=218 Identities=11% Similarity=0.043 Sum_probs=108.7
Q ss_pred EEeCCEEEEEeCCC------CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEE
Q 006979 151 RIFGDTVIFSNYKD------QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (623)
Q Consensus 151 ~~s~d~l~f~~~~~------~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~ 224 (623)
+.-++.||+....+ ..++.+|+.++ .-..+.+- +..|.......-+| +|+.+-..... .....+.
T Consensus 300 a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n--~W~~~~~m---~~~R~~~~~~~~~g-~IYviGG~~~~---~~~~sve 370 (557)
T PHA02713 300 AIVDNEIIIAGGYNFNNPSLNKVYKINIENK--IHVELPPM---IKNRCRFSLAVIDD-TIYAIGGQNGT---NVERTIE 370 (557)
T ss_pred EEECCEEEEEcCCCCCCCccceEEEEECCCC--eEeeCCCC---cchhhceeEEEECC-EEEEECCcCCC---CCCceEE
Confidence 33456677665432 34889998765 34444442 11222222223344 45554332111 1235688
Q ss_pred EEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCC----------------CceEEEEEEecCCCceee
Q 006979 225 AIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW----------------DKAELWVGYISENGDVYK 288 (623)
Q Consensus 225 ~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~----------------~~~~L~v~d~~~~~~~~~ 288 (623)
++|+.+.++.....+........ .-.-+| +|+.+.......-| ....+.++|..++ .
T Consensus 371 ~Ydp~~~~W~~~~~mp~~r~~~~--~~~~~g-~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td----~ 443 (557)
T PHA02713 371 CYTMGDDKWKMLPDMPIALSSYG--MCVLDQ-YIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN----I 443 (557)
T ss_pred EEECCCCeEEECCCCCccccccc--EEEECC-EEEEEeCCCcccccccccccccccccccccccceEEEECCCCC----e
Confidence 89998876533323322211111 122344 47766532211000 1234677776655 3
Q ss_pred eEEEcCCCCCccccCcCceeCCCCcEEEEEeCCC--Ce-eeEEEEecCC-CeEEEEeecccccccccccccCcceeEEee
Q 006979 289 RVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN--GF-WNLHKWIESN-NEVLAIYSLDAEFSRPLWVFGINSYEIIQS 364 (623)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~--g~-~~L~~~d~~~-~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~ 364 (623)
+..+..... .......-.-+|+||.+..... +. ..+.+|||.+ ++++.+.+-...... .....+
T Consensus 444 W~~v~~m~~---~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~-------~~~~~~-- 511 (557)
T PHA02713 444 WETLPNFWT---GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA-------LHTILH-- 511 (557)
T ss_pred EeecCCCCc---ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc-------ceeEEE--
Confidence 333332210 1111122334677877754311 11 2467999998 788877643221111 123333
Q ss_pred cCCCCEEEEEEEECCeEEEEEEeCCCCceeecccC
Q 006979 365 HGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP 399 (623)
Q Consensus 365 s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~ 399 (623)
++.||+....+|...+..+|+.+.+|+.+...
T Consensus 512 ---~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 512 ---DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred ---CCEEEEEeeecceeehhhcCcccccccchhhh
Confidence 45777776666666688889998888877543
No 417
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=90.60 E-value=0.28 Score=51.83 Aligned_cols=81 Identities=12% Similarity=-0.029 Sum_probs=53.4
Q ss_pred cCCHHhHHHHcCceEE-----EE-ECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHH
Q 006979 512 ILNLSIQYWTSRGWAF-----VD-VNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGG 585 (623)
Q Consensus 512 ~~~~~~~~~a~~G~~v-----~~-~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG 585 (623)
.|...++.|.+.||.. .+ +|.|=+. . -...-...+...|+.+.+.. .++|.|+||||||
T Consensus 66 ~~~~li~~L~~~GY~~~~~l~~~pYDWR~~~----------~--~~~~~~~~lk~~ie~~~~~~---~~kv~li~HSmGg 130 (389)
T PF02450_consen 66 YFAKLIENLEKLGYDRGKDLFAAPYDWRLSP----------A--ERDEYFTKLKQLIEEAYKKN---GKKVVLIAHSMGG 130 (389)
T ss_pred hHHHHHHHHHhcCcccCCEEEEEeechhhch----------h--hHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCCCc
Confidence 5667888899888764 22 4555321 1 00112355666677666543 5899999999999
Q ss_pred HHHHHHh-cCC------CceeEEEecccC
Q 006979 586 YTTLAAL-AFR------DTFKAGASLYGV 607 (623)
Q Consensus 586 ~~~~~~~-~~~------~~f~a~v~~~g~ 607 (623)
.++...+ ..+ +.++..|+++++
T Consensus 131 l~~~~fl~~~~~~~W~~~~i~~~i~i~~p 159 (389)
T PF02450_consen 131 LVARYFLQWMPQEEWKDKYIKRFISIGTP 159 (389)
T ss_pred hHHHHHHHhccchhhHHhhhhEEEEeCCC
Confidence 9999888 442 247788887765
No 418
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=90.32 E-value=0.41 Score=45.17 Aligned_cols=91 Identities=13% Similarity=0.086 Sum_probs=55.8
Q ss_pred hHHHHcCceEEEEECCCCCCCCchh-HHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cC
Q 006979 517 IQYWTSRGWAFVDVNYGGSTGYGRE-FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AF 594 (623)
Q Consensus 517 ~~~~a~~G~~v~~~d~rGs~~~g~~-~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~ 594 (623)
+..|.+. ..|++|=||-.+-+..- -............+.|+.+|.+|-+++-. +...+.|.|||.|+.+.+.++ .+
T Consensus 39 as~F~~~-~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n-~GRPfILaGHSQGs~~l~~LL~e~ 116 (207)
T PF11288_consen 39 ASAFNGV-CNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYN-NGRPFILAGHSQGSMHLLRLLKEE 116 (207)
T ss_pred hhhhhcC-CccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcC-CCCCEEEEEeChHHHHHHHHHHHH
Confidence 3334444 57888888864322111 00001111223457899999997666522 125799999999999999998 32
Q ss_pred -------CCceeEEEecccCCC
Q 006979 595 -------RDTFKAGASLYGVSI 609 (623)
Q Consensus 595 -------~~~f~a~v~~~g~~d 609 (623)
..+++|-+..++++.
T Consensus 117 ~~~~pl~~rLVAAYliG~~v~~ 138 (207)
T PF11288_consen 117 IAGDPLRKRLVAAYLIGYPVTV 138 (207)
T ss_pred hcCchHHhhhheeeecCccccH
Confidence 235667776677654
No 419
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=90.27 E-value=2.1 Score=43.65 Aligned_cols=52 Identities=4% Similarity=-0.028 Sum_probs=37.1
Q ss_pred cceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc
Q 006979 247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 313 (623)
Q Consensus 247 ~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~ 313 (623)
...+||||+..|.+.+.+.. ++++|+..+. ....+.+.. .++...+|.|-++
T Consensus 127 ydL~Ws~d~~~l~s~s~dns--------~~l~Dv~~G~---l~~~~~dh~----~yvqgvawDpl~q 178 (434)
T KOG1009|consen 127 YDLAWSPDSNFLVSGSVDNS--------VRLWDVHAGQ---LLAILDDHE----HYVQGVAWDPLNQ 178 (434)
T ss_pred hhhhccCCCceeeeeeccce--------EEEEEeccce---eEeeccccc----cccceeecchhhh
Confidence 34789999999988776543 6777887762 233333333 7889999999887
No 420
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=90.25 E-value=1.1 Score=36.26 Aligned_cols=53 Identities=15% Similarity=0.112 Sum_probs=36.1
Q ss_pred CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 006979 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (623)
Q Consensus 164 ~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~ 230 (623)
+|+|+.+|+.++ +.+.|..+ -..-+..++|||+.+|+++.-. ..+|.++-+.+
T Consensus 36 ~GRll~ydp~t~--~~~vl~~~----L~fpNGVals~d~~~vlv~Et~--------~~Ri~rywl~G 88 (89)
T PF03088_consen 36 TGRLLRYDPSTK--ETTVLLDG----LYFPNGVALSPDESFVLVAETG--------RYRILRYWLKG 88 (89)
T ss_dssp -EEEEEEETTTT--EEEEEEEE----ESSEEEEEE-TTSSEEEEEEGG--------GTEEEEEESSS
T ss_pred CcCEEEEECCCC--eEEEehhC----CCccCeEEEcCCCCEEEEEecc--------CceEEEEEEeC
Confidence 478999999987 67777764 2344567799999998875432 25677766653
No 421
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=90.25 E-value=0.45 Score=42.00 Aligned_cols=52 Identities=19% Similarity=0.056 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-c---C----CCceeEEEecccCC
Q 006979 555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-A---F----RDTFKAGASLYGVS 608 (623)
Q Consensus 555 ~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~---~----~~~f~a~v~~~g~~ 608 (623)
.+.+...++.+.++.. +.+|.+.|||+||.++..++ . + +...++..-..|.+
T Consensus 47 ~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~l~~~~~~~~~~~~~~~fg~P~~ 106 (140)
T PF01764_consen 47 YDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAADLASHGPSSSSNVKCYTFGAPRV 106 (140)
T ss_dssp HHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHHHHHCTTTSTTTEEEEEES-S--
T ss_pred HHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHhhhhcccccccceeeeecCCccc
Confidence 4456666666665543 47999999999999998776 2 1 24567766666654
No 422
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=90.22 E-value=2.5 Score=42.26 Aligned_cols=144 Identities=15% Similarity=0.105 Sum_probs=78.5
Q ss_pred CCCCcCCHHHHhccCCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeee-cC-CceEE
Q 006979 74 SWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQE-YG-GGAFR 151 (623)
Q Consensus 74 ~w~s~~t~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~-~g-~~~~~ 151 (623)
.|+.|.--++.-+.-+.|.++... ++...|+..-.+- ....-||-...+||-...+...+ .+.+ .. .-+-.
T Consensus 137 ~WkPpFIs~la~eDRCHLNGlA~~-~g~p~yVTa~~~s-D~~~gWR~~~~~gG~vidv~s~e-----vl~~GLsmPhSPR 209 (335)
T TIGR03032 137 LWKPPFISKLAPEDRCHLNGMALD-DGEPRYVTALSQS-DVADGWREGRRDGGCVIDIPSGE-----VVASGLSMPHSPR 209 (335)
T ss_pred ccCCccccccCccCceeecceeee-CCeEEEEEEeecc-CCcccccccccCCeEEEEeCCCC-----EEEcCccCCcCCc
Confidence 377775444444455889999987 5556555432221 11224655544444222221111 0100 00 11233
Q ss_pred EeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCC------C-----CCce
Q 006979 152 IFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD------A-----LNST 220 (623)
Q Consensus 152 ~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~------~-----~~~~ 220 (623)
|.+++++|.+...+.|+.+|+++| ..+.+... +.+.....|. |++++..+....+. | ....
T Consensus 210 WhdgrLwvldsgtGev~~vD~~~G--~~e~Va~v----pG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~ 281 (335)
T TIGR03032 210 WYQGKLWLLNSGRGELGYVDPQAG--KFQPVAFL----PGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALG 281 (335)
T ss_pred EeCCeEEEEECCCCEEEEEcCCCC--cEEEEEEC----CCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhc
Confidence 456789999988999999999877 66666654 3445566676 77665554432211 0 0123
Q ss_pred eEEEEEEcCCCC
Q 006979 221 TEIVAIALNGQN 232 (623)
Q Consensus 221 ~~L~~idl~~g~ 232 (623)
..|+++|+.+|.
T Consensus 282 CGv~vidl~tG~ 293 (335)
T TIGR03032 282 CGVAVIDLNSGD 293 (335)
T ss_pred ccEEEEECCCCC
Confidence 457777777665
No 423
>PRK13615 lipoprotein LpqB; Provisional
Probab=89.96 E-value=17 Score=40.19 Aligned_cols=159 Identities=9% Similarity=0.019 Sum_probs=88.4
Q ss_pred cceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeee
Q 006979 247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWN 326 (623)
Q Consensus 247 ~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~ 326 (623)
..+..|+||+.+|++.. ...|++-...+. ...++.+ ..+..|.|.++| .+|...+.+ ...
T Consensus 337 ~s~avS~dg~~~A~v~~--------~~~l~vg~~~~~----~~~~~~~------~~Lt~PS~d~~g-~vWtv~~g~-~~~ 396 (557)
T PRK13615 337 DAATLSADGRQAAVRNA--------SGVWSVGDGDRD----AVLLDTR------PGLVAPSLDAQG-YVWSTPASD-PRG 396 (557)
T ss_pred ccceEcCCCceEEEEcC--------CceEEEecCCCc----ceeeccC------CccccCcCcCCC-CEEEEeCCC-ceE
Confidence 35789999999999842 124666654422 2333332 357899999998 566655522 344
Q ss_pred EEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEE--EeCCCCceeec-ccC----
Q 006979 327 LHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI--LDDFGHSLSLL-DIP---- 399 (623)
Q Consensus 327 L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~--~d~~~~~~~~l-t~~---- 399 (623)
+.+... +|+...+. ..|..+ ....-+..|+||-++.+..+.+|..+|++ +-.+++..+.| +.+
T Consensus 397 l~~~~~-~G~~~~v~--------v~~~~~-~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~ 466 (557)
T PRK13615 397 LVAWGP-DGVGHPVA--------VSWTAT-GRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELL 466 (557)
T ss_pred EEEecC-CCceEEee--------ccccCC-CeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcc
Confidence 444433 34443332 133322 12333334558888888776666555554 33344433344 322
Q ss_pred --CcceEee-eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979 400 --FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (623)
Q Consensus 400 --~~~v~~~-~~~~~~~~~~~~s~~~~~~ly~~~l~~~~ 435 (623)
...+..+ ..+++.+++++........++++.+.+..
T Consensus 467 ~~l~~v~sl~W~~~~~laVl~~~~~~~~~v~~v~v~g~~ 505 (557)
T PRK13615 467 ASPGTPLDATWVDELDVATLTLAPDGERQVELHQVGGPS 505 (557)
T ss_pred cCcCcceeeEEcCCCEEEEEeccCCCCceEEEEECCCcc
Confidence 1223334 45677787777555555678888887654
No 424
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=89.95 E-value=3.8 Score=43.45 Aligned_cols=120 Identities=22% Similarity=0.126 Sum_probs=73.7
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEE-EECCCCCCCCchhHHHhhccC
Q 006979 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFV-DVNYGGSTGYGREFRERLLGR 549 (623)
Q Consensus 471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~-~~d~rGs~~~g~~~~~~~~~~ 549 (623)
.+.++. +++.|- +-++|+.|+.-|.-. ...|... -.+-..|.-.+ .-|.|=-|| +|.
T Consensus 274 ~reEi~-yYFnPG--------D~KPPL~VYFSGyR~---aEGFEgy-~MMk~Lg~PfLL~~DpRleGG---aFY------ 331 (511)
T TIGR03712 274 KRQEFI-YYFNPG--------DFKPPLNVYFSGYRP---AEGFEGY-FMMKRLGAPFLLIGDPRLEGG---AFY------ 331 (511)
T ss_pred CCCeeE-EecCCc--------CCCCCeEEeeccCcc---cCcchhH-HHHHhcCCCeEEeeccccccc---eee------
Confidence 455565 566664 467899999988622 2233211 12334555444 458885433 111
Q ss_pred CccchH-HHHHHHHHH-HHhCCCCCCCceEEEEcChHHHHHHHHhc--CCCceeEEEecccCCCHHHhhhh
Q 006979 550 WGIVDV-NDCCSCATF-LVGSGKADEKRLCITGGSAGGYTTLAALA--FRDTFKAGASLYGVSIPVIISEE 616 (623)
Q Consensus 550 ~g~~~~-~D~~~~~~~-l~~~~~~d~~rv~i~G~S~GG~~~~~~~~--~~~~f~a~v~~~g~~d~~~~~~~ 616 (623)
.|..++ +-++..|+. |...| .+.+.+.+.|-|||.|-|++..+ .| +|+|..=|++++-.++..
T Consensus 332 lGs~eyE~~I~~~I~~~L~~Lg-F~~~qLILSGlSMGTfgAlYYga~l~P---~AIiVgKPL~NLGtiA~n 398 (511)
T TIGR03712 332 LGSDEYEQGIINVIQEKLDYLG-FDHDQLILSGLSMGTFGALYYGAKLSP---HAIIVGKPLVNLGTIASR 398 (511)
T ss_pred eCcHHHHHHHHHHHHHHHHHhC-CCHHHeeeccccccchhhhhhcccCCC---ceEEEcCcccchhhhhcc
Confidence 122222 234444443 33333 67899999999999999999883 34 788999999999877543
No 425
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=89.86 E-value=13 Score=36.85 Aligned_cols=146 Identities=12% Similarity=0.075 Sum_probs=88.1
Q ss_pred eEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCC--------------CCCceEEEEEEecCCCce
Q 006979 221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM--------------PWDKAELWVGYISENGDV 286 (623)
Q Consensus 221 ~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~--------------p~~~~~L~v~d~~~~~~~ 286 (623)
..+|.+.+-+.. + +.+.|-++...|+-| .|+|-.|-+... -+.-+-|+.+|.+.+.
T Consensus 20 ~~iY~felvG~~---P---~SGGDTYNAV~~vDd--~IyFGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~-- 89 (339)
T PF09910_consen 20 EKIYRFELVGPP---P---TSGGDTYNAVEWVDD--FIYFGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDS-- 89 (339)
T ss_pred eEEEEeeeccCC---C---CCCCccceeeeeecc--eEEEeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCe--
Confidence 557777765543 2 456677777788754 477777755321 1123456777877652
Q ss_pred eeeEEEcC---CCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEE
Q 006979 287 YKRVCVAG---FDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEII 362 (623)
Q Consensus 287 ~~~~~~~~---~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l 362 (623)
.+.+..+ .+..|.+.+++.-+.|=.. |++...+..-.--||.+|..+++.+.|.....--+ ..+
T Consensus 90 -VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ps~KG----------~~~- 157 (339)
T PF09910_consen 90 -VRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKLSSNPSLKG----------TLV- 157 (339)
T ss_pred -EEEEEecccCCccccccchhheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeeccCCCCcCc----------eEe-
Confidence 2222221 1236888899999998655 77776653334457888888999998875421111 111
Q ss_pred eecCCCCEEEEEEE--ECCeEEEEEEeCCCCce
Q 006979 363 QSHGEKNLIACSYR--QNGRSYLGILDDFGHSL 393 (623)
Q Consensus 363 ~~s~~~~~l~~~~~--~~g~~~L~~~d~~~~~~ 393 (623)
.+..+|... ..|.+.|..+|+.++++
T Consensus 158 -----~D~a~F~i~~~~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 158 -----HDYACFGINNFHKGVSGIHCLDLISGKW 185 (339)
T ss_pred -----eeeEEEeccccccCCceEEEEEccCCeE
Confidence 122333322 35677899999988888
No 426
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=89.68 E-value=21 Score=36.46 Aligned_cols=138 Identities=11% Similarity=0.040 Sum_probs=76.7
Q ss_pred CcEEEEeCCCCC--CCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceeccc-
Q 006979 165 QRLYKHSIDSKD--SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS- 241 (623)
Q Consensus 165 ~~l~~~d~~~g~--~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~- 241 (623)
..||++...+|. ...++++.. ...+.|..|||.-+.+++.+.-. ..|-+.|...+.-. ...++.
T Consensus 234 ~~I~lw~~~~g~W~vd~~Pf~gH----~~SVEDLqWSptE~~vfaScS~D--------gsIrIWDiRs~~~~-~~~~~kA 300 (440)
T KOG0302|consen 234 KGIHLWEPSTGSWKVDQRPFTGH----TKSVEDLQWSPTEDGVFASCSCD--------GSIRIWDIRSGPKK-AAVSTKA 300 (440)
T ss_pred cceEeeeeccCceeecCcccccc----ccchhhhccCCccCceEEeeecC--------ceEEEEEecCCCcc-ceeEeec
Confidence 347777766551 123344432 34577999999998888877633 56777788776311 222222
Q ss_pred -CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEe
Q 006979 242 -GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTD 319 (623)
Q Consensus 242 -~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~ 319 (623)
+.+ ++-..|+-+-..||+-. +...+.+.|+..-..-.....+.-.. .-+..+.|+|... .+.++.
T Consensus 301 h~sD-VNVISWnr~~~lLasG~--------DdGt~~iwDLR~~~~~~pVA~fk~Hk----~pItsieW~p~e~s~iaasg 367 (440)
T KOG0302|consen 301 HNSD-VNVISWNRREPLLASGG--------DDGTLSIWDLRQFKSGQPVATFKYHK----APITSIEWHPHEDSVIAASG 367 (440)
T ss_pred cCCc-eeeEEccCCcceeeecC--------CCceEEEEEhhhccCCCcceeEEecc----CCeeEEEeccccCceEEecc
Confidence 222 44567988776455432 23457777876431101122222222 4567899998655 444444
Q ss_pred CCCCeeeEEE
Q 006979 320 RKNGFWNLHK 329 (623)
Q Consensus 320 ~~~g~~~L~~ 329 (623)
. +.+-.||-
T Consensus 368 ~-D~QitiWD 376 (440)
T KOG0302|consen 368 E-DNQITIWD 376 (440)
T ss_pred C-CCcEEEEE
Confidence 3 45555553
No 427
>PF03283 PAE: Pectinacetylesterase
Probab=89.65 E-value=0.25 Score=51.40 Aligned_cols=38 Identities=24% Similarity=0.291 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh
Q 006979 555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL 592 (623)
Q Consensus 555 ~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~ 592 (623)
..-+.+++++|.+++.-++++|.+.|.|+||+-++..+
T Consensus 137 ~~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~ 174 (361)
T PF03283_consen 137 YRILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHA 174 (361)
T ss_pred HHHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHH
Confidence 45578999999999888999999999999999998765
No 428
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=89.59 E-value=8 Score=41.71 Aligned_cols=124 Identities=11% Similarity=0.104 Sum_probs=60.8
Q ss_pred ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCee
Q 006979 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFW 325 (623)
Q Consensus 246 ~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~ 325 (623)
+.+..|.-+|.||+.+.-+.. ...+++..+..... + .-+.-.. +.+....|.|---.+|++.. .
T Consensus 524 i~~vtWHrkGDYlatV~~~~~-----~~~VliHQLSK~~s--Q-~PF~ksk----G~vq~v~FHPs~p~lfVaTq--~-- 587 (733)
T KOG0650|consen 524 IRQVTWHRKGDYLATVMPDSG-----NKSVLIHQLSKRKS--Q-SPFRKSK----GLVQRVKFHPSKPYLFVATQ--R-- 587 (733)
T ss_pred cceeeeecCCceEEEeccCCC-----cceEEEEecccccc--c-CchhhcC----CceeEEEecCCCceEEEEec--c--
Confidence 455668888888887764432 44567777654421 0 0111111 44566778776445555443 2
Q ss_pred eEEEEecCCCeE-EEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeeccc
Q 006979 326 NLHKWIESNNEV-LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI 398 (623)
Q Consensus 326 ~L~~~d~~~~~~-~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~ 398 (623)
.+-.||+..+++ +.|.+ +..|. +++.+. |.|+.|++.+. ++.--.+-+|+.++-.+.|-.
T Consensus 588 ~vRiYdL~kqelvKkL~t------g~kwi---S~msih---p~GDnli~gs~-d~k~~WfDldlsskPyk~lr~ 648 (733)
T KOG0650|consen 588 SVRIYDLSKQELVKKLLT------GSKWI---SSMSIH---PNGDNLILGSY-DKKMCWFDLDLSSKPYKTLRL 648 (733)
T ss_pred ceEEEehhHHHHHHHHhc------CCeee---eeeeec---CCCCeEEEecC-CCeeEEEEcccCcchhHHhhh
Confidence 344566655331 22222 22343 233333 37777777653 333333334444444554443
No 429
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.50 E-value=24 Score=41.57 Aligned_cols=60 Identities=12% Similarity=0.059 Sum_probs=37.3
Q ss_pred eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEe
Q 006979 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEW 263 (623)
Q Consensus 192 ~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~ 263 (623)
....+.+--+++.|+++.+. +.|.++|+.+.. ...+..-..-+...+||||+++++++..
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~---------G~iilvd~et~~---~eivg~vd~GI~aaswS~Dee~l~liT~ 129 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITAL---------GDIILVDPETLE---LEIVGNVDNGISAASWSPDEELLALITG 129 (1265)
T ss_pred ceEEEEEecccceEEEEecC---------CcEEEEcccccc---eeeeeeccCceEEEeecCCCcEEEEEeC
Confidence 34445566677777666543 457777777665 2222222223445789999999999974
No 430
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=89.46 E-value=23 Score=34.96 Aligned_cols=106 Identities=8% Similarity=0.006 Sum_probs=61.8
Q ss_pred eeecCCceEEE--eCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCC--EEEEEEeccCCCCC
Q 006979 142 AQEYGGGAFRI--FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFN--RYVTVREDRRQDAL 217 (623)
Q Consensus 142 ~~~~g~~~~~~--s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~--~l~~v~~~~~~~~~ 217 (623)
.|.|++.+..| -+..++.+..-|..|-++|..+- +.....+- +..+..-.|||-.. -|+++--+.
T Consensus 99 ~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl-Q~a~~F~m-----e~~VYshamSp~a~sHcLiA~gtr~----- 167 (397)
T KOG4283|consen 99 GHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL-QEAVDFKM-----EGKVYSHAMSPMAMSHCLIAAGTRD----- 167 (397)
T ss_pred cceeeeeeeEEeeecCceeecccccceEEEeecccc-eeeEEeec-----CceeehhhcChhhhcceEEEEecCC-----
Confidence 45666655443 34456555555667889998764 22222222 12233446787432 333332222
Q ss_pred CceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEe
Q 006979 218 NSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEW 263 (623)
Q Consensus 218 ~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~ 263 (623)
.++-+-|+.+|.- ...|....+-+...+|||-..|+.+...
T Consensus 168 ---~~VrLCDi~SGs~--sH~LsGHr~~vlaV~Wsp~~e~vLatgs 208 (397)
T KOG4283|consen 168 ---VQVRLCDIASGSF--SHTLSGHRDGVLAVEWSPSSEWVLATGS 208 (397)
T ss_pred ---CcEEEEeccCCcc--eeeeccccCceEEEEeccCceeEEEecC
Confidence 4566779988862 3445555566667899999999988763
No 431
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=89.38 E-value=1.3 Score=55.00 Aligned_cols=97 Identities=12% Similarity=0.093 Sum_probs=57.8
Q ss_pred CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575 (623)
Q Consensus 496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r 575 (623)
|.|+++||.++. ...|....+.+ ..++.|+.++.+|.+..- -....++++.+.+...+..- ....+
T Consensus 1069 ~~l~~lh~~~g~--~~~~~~l~~~l-~~~~~v~~~~~~g~~~~~----------~~~~~l~~la~~~~~~i~~~-~~~~p 1134 (1296)
T PRK10252 1069 PTLFCFHPASGF--AWQFSVLSRYL-DPQWSIYGIQSPRPDGPM----------QTATSLDEVCEAHLATLLEQ-QPHGP 1134 (1296)
T ss_pred CCeEEecCCCCc--hHHHHHHHHhc-CCCCcEEEEECCCCCCCC----------CCCCCHHHHHHHHHHHHHhh-CCCCC
Confidence 457888988433 33555566655 446999999998853210 01123344333322222211 11247
Q ss_pred eEEEEcChHHHHHHHHh-c---CCCceeEEEeccc
Q 006979 576 LCITGGSAGGYTTLAAL-A---FRDTFKAGASLYG 606 (623)
Q Consensus 576 v~i~G~S~GG~~~~~~~-~---~~~~f~a~v~~~g 606 (623)
+.++|||+||.++..++ . +++.+...+...+
T Consensus 1135 ~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~ 1169 (1296)
T PRK10252 1135 YHLLGYSLGGTLAQGIAARLRARGEEVAFLGLLDT 1169 (1296)
T ss_pred EEEEEechhhHHHHHHHHHHHHcCCceeEEEEecC
Confidence 99999999999999887 3 4667776665543
No 432
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=89.31 E-value=26 Score=35.30 Aligned_cols=143 Identities=17% Similarity=0.079 Sum_probs=80.8
Q ss_pred eEEEeCCEEEEEeCCCCcEEEEeCCCC---CCCc---eecCCCCCCCCeeecceeeCCCCCEEEEEEe-ccCC----CCC
Q 006979 149 AFRIFGDTVIFSNYKDQRLYKHSIDSK---DSSP---LPITPDYGEPLVSYADGIFDPRFNRYVTVRE-DRRQ----DAL 217 (623)
Q Consensus 149 ~~~~s~d~l~f~~~~~~~l~~~d~~~g---~~~~---~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~-~~~~----~~~ 217 (623)
..++.++.++|++..-+-|-.++..-. --+| ..|+++ ..+..+..++. ||+ ..||.. ...+ +-+
T Consensus 107 dia~~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~e---DRCHLNGlA~~-~g~-p~yVTa~~~sD~~~gWR~ 181 (335)
T TIGR03032 107 DLALGAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPE---DRCHLNGMALD-DGE-PRYVTALSQSDVADGWRE 181 (335)
T ss_pred heeecCCcEEEEECcceeEEEECCCCccccccCCccccccCcc---Cceeecceeee-CCe-EEEEEEeeccCCcccccc
Confidence 344545577888766666666665421 0012 233332 24667777663 454 444432 1111 111
Q ss_pred CceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCC
Q 006979 218 NSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP 297 (623)
Q Consensus 218 ~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~ 297 (623)
.....=+++|+.+++ .+..+-.+.-.|+|- ||+ |.+..+ ...+++.+|.+++ ....+...+
T Consensus 182 ~~~~gG~vidv~s~e-----vl~~GLsmPhSPRWh-dgr-Lwvlds-------gtGev~~vD~~~G----~~e~Va~vp- 242 (335)
T TIGR03032 182 GRRDGGCVIDIPSGE-----VVASGLSMPHSPRWY-QGK-LWLLNS-------GRGELGYVDPQAG----KFQPVAFLP- 242 (335)
T ss_pred cccCCeEEEEeCCCC-----EEEcCccCCcCCcEe-CCe-EEEEEC-------CCCEEEEEcCCCC----cEEEEEECC-
Confidence 223345668998875 466777777789996 565 766642 2557999998766 233333334
Q ss_pred CccccCcCceeCCCCcEEEEEeC
Q 006979 298 TIVESPTEPKWSSKGELFFVTDR 320 (623)
Q Consensus 298 ~~~~~~~~~~ws~DG~l~~~~~~ 320 (623)
+......|. |.+++++..
T Consensus 243 ---G~~rGL~f~--G~llvVgmS 260 (335)
T TIGR03032 243 ---GFTRGLAFA--GDFAFVGLS 260 (335)
T ss_pred ---CCCccccee--CCEEEEEec
Confidence 456788887 777777643
No 433
>PHA03098 kelch-like protein; Provisional
Probab=89.26 E-value=28 Score=38.52 Aligned_cols=193 Identities=7% Similarity=-0.083 Sum_probs=94.4
Q ss_pred eeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCc
Q 006979 220 TTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI 299 (623)
Q Consensus 220 ~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~ 299 (623)
...++.+|+.+.++.....+........ ...-+| +|+.+...... .....++++|..++ ...........
T Consensus 310 ~~~v~~yd~~~~~W~~~~~~~~~R~~~~--~~~~~~-~lyv~GG~~~~--~~~~~v~~yd~~~~----~W~~~~~lp~~- 379 (534)
T PHA03098 310 VNSVVSYDTKTKSWNKVPELIYPRKNPG--VTVFNN-RIYVIGGIYNS--ISLNTVESWKPGES----KWREEPPLIFP- 379 (534)
T ss_pred eccEEEEeCCCCeeeECCCCCcccccce--EEEECC-EEEEEeCCCCC--EecceEEEEcCCCC----ceeeCCCcCcC-
Confidence 3578999998887422221211111111 122344 46666532211 01345777777654 23322221100
Q ss_pred cccCcCceeCCCCcEEEEEeCCCC---eeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEE
Q 006979 300 VESPTEPKWSSKGELFFVTDRKNG---FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR 376 (623)
Q Consensus 300 ~~~~~~~~ws~DG~l~~~~~~~~g---~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~ 376 (623)
.. ....-.-+|++|.......+ ...++++|+.+++++.+.+....... ..... -++.+|+..-
T Consensus 380 -r~-~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-------~~~~~-----~~~~iyv~GG 445 (534)
T PHA03098 380 -RY-NPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-------GCAIY-----HDGKIYVIGG 445 (534)
T ss_pred -Cc-cceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-------ceEEE-----ECCEEEEECC
Confidence 11 11122235666665432111 25688999999888877542211110 11222 2345555432
Q ss_pred EC------CeEEEEEEeCCCCceeecccCCc-c-eEeeeecCCEEEEEEecCCC--CCeEEEEEcCCCcc
Q 006979 377 QN------GRSYLGILDDFGHSLSLLDIPFT-D-IDNITLGNDCLFVEGASGVE--PSSVAKVTLDDHKL 436 (623)
Q Consensus 377 ~~------g~~~L~~~d~~~~~~~~lt~~~~-~-v~~~~~~~~~~~~~~~s~~~--~~~ly~~~l~~~~~ 436 (623)
.. ....++++|+.+++|+.+..... . ...+..-++.+|+.+..... ...++.+|+++.+.
T Consensus 446 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 446 ISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred ccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 11 13459999999999988753211 1 11222236677777643221 35688888877763
No 434
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=89.24 E-value=10 Score=38.67 Aligned_cols=137 Identities=12% Similarity=0.106 Sum_probs=79.1
Q ss_pred eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCC
Q 006979 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 271 (623)
Q Consensus 192 ~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~ 271 (623)
.+.+..|++.+ .++-+.+|| .|.+.|+.++.. ...++.+..+ .....+|+-+.|+--+.++
T Consensus 262 ~Vs~V~w~d~~-v~yS~SwDH---------TIk~WDletg~~--~~~~~~~ksl-~~i~~~~~~~Ll~~gssdr------ 322 (423)
T KOG0313|consen 262 PVSSVVWSDAT-VIYSVSWDH---------TIKVWDLETGGL--KSTLTTNKSL-NCISYSPLSKLLASGSSDR------ 322 (423)
T ss_pred ceeeEEEcCCC-ceEeecccc---------eEEEEEeecccc--eeeeecCcce-eEeecccccceeeecCCCC------
Confidence 35577788844 344445554 588999988762 3445554444 3467899888777555443
Q ss_pred ceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeeccccccccc
Q 006979 272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPL 351 (623)
Q Consensus 272 ~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~ 351 (623)
-|.++|...++.--....+.+.. ..+....|+|.....|++-..++...||-+....+.+-.|...+..+-...
T Consensus 323 --~irl~DPR~~~gs~v~~s~~gH~----nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vd 396 (423)
T KOG0313|consen 323 --HIRLWDPRTGDGSVVSQSLIGHK----NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVD 396 (423)
T ss_pred --ceeecCCCCCCCceeEEeeecch----hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEe
Confidence 27777876663312344556665 456788999998855555543566666644322233444444333333344
Q ss_pred cc
Q 006979 352 WV 353 (623)
Q Consensus 352 w~ 353 (623)
|.
T Consensus 397 W~ 398 (423)
T KOG0313|consen 397 WN 398 (423)
T ss_pred cc
Confidence 53
No 435
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=89.13 E-value=13 Score=36.76 Aligned_cols=99 Identities=14% Similarity=0.022 Sum_probs=55.4
Q ss_pred CeeecceeeCC-CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCC
Q 006979 190 LVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM 268 (623)
Q Consensus 190 ~~~~~d~~~sP-dG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~ 268 (623)
.....+..||| ....+++.++|.. -++|-+.-. |... .+....-..-+-..+||-||.+++--.-|.
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~t-------VR~wevq~~-g~~~-~ka~~~~~~PvL~v~WsddgskVf~g~~Dk--- 94 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGT-------VRIWEVQNS-GQLV-PKAQQSHDGPVLDVCWSDDGSKVFSGGCDK--- 94 (347)
T ss_pred ccchheeEeccccCceEEecccCCc-------eEEEEEecC-Cccc-chhhhccCCCeEEEEEccCCceEEeeccCC---
Confidence 45677899999 4444546666642 445555443 3210 122222222233467999998776444332
Q ss_pred CCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc
Q 006979 269 PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 313 (623)
Q Consensus 269 p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~ 313 (623)
++-++|+.++ ....+...+ ..+....|-+...
T Consensus 95 -----~~k~wDL~S~----Q~~~v~~Hd----~pvkt~~wv~~~~ 126 (347)
T KOG0647|consen 95 -----QAKLWDLASG----QVSQVAAHD----APVKTCHWVPGMN 126 (347)
T ss_pred -----ceEEEEccCC----Ceeeeeecc----cceeEEEEecCCC
Confidence 3777799887 334444444 4556677876543
No 436
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.09 E-value=24 Score=34.69 Aligned_cols=176 Identities=18% Similarity=0.127 Sum_probs=90.9
Q ss_pred eeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCc
Q 006979 220 TTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI 299 (623)
Q Consensus 220 ~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~ 299 (623)
.+.|..+|+++|+......|. ..-|-.+... -+.+|+-+.|.+ ...+++|.++-.. ...+.-..
T Consensus 67 ~S~l~~~d~~tg~~~~~~~l~-~~~FgEGit~--~~d~l~qLTWk~-------~~~f~yd~~tl~~---~~~~~y~~--- 130 (264)
T PF05096_consen 67 QSSLRKVDLETGKVLQSVPLP-PRYFGEGITI--LGDKLYQLTWKE-------GTGFVYDPNTLKK---IGTFPYPG--- 130 (264)
T ss_dssp EEEEEEEETTTSSEEEEEE-T-TT--EEEEEE--ETTEEEEEESSS-------SEEEEEETTTTEE---EEEEE-SS---
T ss_pred cEEEEEEECCCCcEEEEEECC-ccccceeEEE--ECCEEEEEEecC-------CeEEEEccccceE---EEEEecCC---
Confidence 488999999999732222222 2223222232 356788888764 3478889876532 22221111
Q ss_pred cccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCe-EEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEEC
Q 006979 300 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNE-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN 378 (623)
Q Consensus 300 ~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~-~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~ 378 (623)
....-..||+.++++| |..+|+.+||.+-+ .+.+.-.. -+.| ....+.+.+. + +.+|..- =
T Consensus 131 ----EGWGLt~dg~~Li~SD---GS~~L~~~dP~~f~~~~~i~V~~--~g~p--v~~LNELE~i----~-G~IyANV--W 192 (264)
T PF05096_consen 131 ----EGWGLTSDGKRLIMSD---GSSRLYFLDPETFKEVRTIQVTD--NGRP--VSNLNELEYI----N-GKIYANV--W 192 (264)
T ss_dssp ----S--EEEECSSCEEEE----SSSEEEEE-TTT-SEEEEEE-EE--TTEE-----EEEEEEE----T-TEEEEEE--T
T ss_pred ----cceEEEcCCCEEEEEC---CccceEEECCcccceEEEEEEEE--CCEE--CCCcEeEEEE----c-CEEEEEe--C
Confidence 1223347888565664 56789999998754 33332110 0111 1122345554 4 3444332 3
Q ss_pred CeEEEEEEeCCCCceee-cc---------c-----C-CcceEee--eecCCEEEEEEecCCCCCeEEEEEcC
Q 006979 379 GRSYLGILDDFGHSLSL-LD---------I-----P-FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLD 432 (623)
Q Consensus 379 g~~~L~~~d~~~~~~~~-lt---------~-----~-~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~ 432 (623)
-...|+++|+++|++.. ++ . + .....++ +++.+++++++= .-+.+|.+.+.
T Consensus 193 ~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK---~Wp~lyeV~l~ 261 (264)
T PF05096_consen 193 QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK---LWPKLYEVKLV 261 (264)
T ss_dssp TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET---T-SEEEEEEEE
T ss_pred CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC---CCCceEEEEEE
Confidence 35789999999998863 21 0 0 1124455 677888888763 33578877653
No 437
>PHA03098 kelch-like protein; Provisional
Probab=89.06 E-value=41 Score=37.22 Aligned_cols=214 Identities=11% Similarity=-0.032 Sum_probs=101.7
Q ss_pred eCCEEEEEeCCC------CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 006979 153 FGDTVIFSNYKD------QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (623)
Q Consensus 153 s~d~l~f~~~~~------~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i 226 (623)
.++.+++....+ ..++.+|+.++ .-..++.. +..|.......-+| .|+.+-.... ......++++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~---~~~R~~~~~~~~~~-~lyv~GG~~~---~~~~~~v~~y 363 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTK--SWNKVPEL---IYPRKNPGVTVFNN-RIYVIGGIYN---SISLNTVESW 363 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCC--eeeECCCC---CcccccceEEEECC-EEEEEeCCCC---CEecceEEEE
Confidence 345566654321 25899998876 44555543 11222212222344 4544432211 1134668889
Q ss_pred EcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCc
Q 006979 227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 306 (623)
Q Consensus 227 dl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (623)
|+.++++.....+..... ....-.-+| +|+.+.....+. .....++++|..++ .+......+ . ......
T Consensus 364 d~~~~~W~~~~~lp~~r~--~~~~~~~~~-~iYv~GG~~~~~-~~~~~v~~yd~~t~----~W~~~~~~p-~--~r~~~~ 432 (534)
T PHA03098 364 KPGESKWREEPPLIFPRY--NPCVVNVNN-LIYVIGGISKND-ELLKTVECFSLNTN----KWSKGSPLP-I--SHYGGC 432 (534)
T ss_pred cCCCCceeeCCCcCcCCc--cceEEEECC-EEEEECCcCCCC-cccceEEEEeCCCC----eeeecCCCC-c--cccCce
Confidence 998877533222322211 111122344 566554311110 01245788887765 233322222 0 111112
Q ss_pred eeCCCCcEEEEEeCCC-----CeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECC--
Q 006979 307 KWSSKGELFFVTDRKN-----GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG-- 379 (623)
Q Consensus 307 ~ws~DG~l~~~~~~~~-----g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g-- 379 (623)
...-++++|.+..... ....++++|+.+++++.+.+... +.+. .....+ + +.+|+..-..+
T Consensus 433 ~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~----~r~~---~~~~~~----~-~~iyv~GG~~~~~ 500 (534)
T PHA03098 433 AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNF----PRIN---ASLCIF----N-NKIYVVGGDKYEY 500 (534)
T ss_pred EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCc----cccc---ceEEEE----C-CEEEEEcCCcCCc
Confidence 2334666666543211 13458999999999887753311 1111 122222 3 44555432221
Q ss_pred -eEEEEEEeCCCCceeeccc
Q 006979 380 -RSYLGILDDFGHSLSLLDI 398 (623)
Q Consensus 380 -~~~L~~~d~~~~~~~~lt~ 398 (623)
...++.+|+++++|+.+..
T Consensus 501 ~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 501 YINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred ccceeEEEeCCCCEEEecCC
Confidence 3468889999888887754
No 438
>PHA02713 hypothetical protein; Provisional
Probab=89.01 E-value=42 Score=37.36 Aligned_cols=238 Identities=7% Similarity=-0.066 Sum_probs=115.3
Q ss_pred cEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCc
Q 006979 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF 245 (623)
Q Consensus 166 ~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~ 245 (623)
.++.+|+.++ .-..+++.+ ..+.......-+ +.|+.+-..... ......++.+|+.++.+.....+......
T Consensus 273 ~v~~yd~~~~--~W~~l~~mp---~~r~~~~~a~l~-~~IYviGG~~~~--~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~ 344 (557)
T PHA02713 273 CILVYNINTM--EYSVISTIP---NHIINYASAIVD-NEIIIAGGYNFN--NPSLNKVYKINIENKIHVELPPMIKNRCR 344 (557)
T ss_pred CEEEEeCCCC--eEEECCCCC---ccccceEEEEEC-CEEEEEcCCCCC--CCccceEEEEECCCCeEeeCCCCcchhhc
Confidence 4788888765 455555431 112111122223 355554321101 11346789999988764222222211111
Q ss_pred ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCC---
Q 006979 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN--- 322 (623)
Q Consensus 246 ~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~--- 322 (623)
.. .-.-+| +||.+....... ....+.++|..++ .+..++..... .. ....-.-+|++|.+.....
T Consensus 345 ~~--~~~~~g-~IYviGG~~~~~--~~~sve~Ydp~~~----~W~~~~~mp~~--r~-~~~~~~~~g~IYviGG~~~~~~ 412 (557)
T PHA02713 345 FS--LAVIDD-TIYAIGGQNGTN--VERTIECYTMGDD----KWKMLPDMPIA--LS-SYGMCVLDQYIYIIGGRTEHID 412 (557)
T ss_pred ee--EEEECC-EEEEECCcCCCC--CCceEEEEECCCC----eEEECCCCCcc--cc-cccEEEECCEEEEEeCCCcccc
Confidence 11 123355 477665332110 1234777787655 33333332200 11 1111234677777654311
Q ss_pred -----------------CeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECC----eE
Q 006979 323 -----------------GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG----RS 381 (623)
Q Consensus 323 -----------------g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g----~~ 381 (623)
....+.++||.+++++.+.+....... .....+ ++.||+..-.++ ..
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-------~~~~~~-----~~~IYv~GG~~~~~~~~~ 480 (557)
T PHA02713 413 YTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-------PGVVSH-----KDDIYVVCDIKDEKNVKT 480 (557)
T ss_pred cccccccccccccccccccceEEEECCCCCeEeecCCCCccccc-------CcEEEE-----CCEEEEEeCCCCCCccce
Confidence 023588999999998877643211111 122333 345666543221 23
Q ss_pred EEEEEeCCC-CceeecccCCcc--eEeeeecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979 382 YLGILDDFG-HSLSLLDIPFTD--IDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (623)
Q Consensus 382 ~L~~~d~~~-~~~~~lt~~~~~--v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~ 436 (623)
.+.++|+++ .+|+.+..-... ..++..-++++|+++.-.. ...+..+|+.+.+.
T Consensus 481 ~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~-~~~~e~yd~~~~~W 537 (557)
T PHA02713 481 CIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYES-YMLQDTFNVYTYEW 537 (557)
T ss_pred eEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecc-eeehhhcCcccccc
Confidence 578999998 789876532211 1122445778888875322 12455666666664
No 439
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=89.01 E-value=6.7 Score=43.06 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=25.1
Q ss_pred EEEEEcCCCCcccceecccCC--CcccceeeCCCCCEEEEEEecCC
Q 006979 223 IVAIALNGQNIQEPKVLVSGS--DFYAFPRMDPRGERMAWIEWHHP 266 (623)
Q Consensus 223 L~~idl~~g~~~~~~~l~~~~--~~~~~p~wSPDG~~la~~~~~~~ 266 (623)
++..+...++ ++++..+. .-..+|.|||||++| |+...||
T Consensus 482 ~~~~~~~~g~---~~rf~~~P~gaE~tG~~fspDg~tl-FvniQHP 523 (524)
T PF05787_consen 482 VWAYDPDTGE---LKRFLVGPNGAEITGPCFSPDGRTL-FVNIQHP 523 (524)
T ss_pred eeeccccccc---eeeeccCCCCcccccceECCCCCEE-EEEEeCC
Confidence 4445556666 55554332 224679999999986 4555665
No 440
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=88.97 E-value=41 Score=37.15 Aligned_cols=84 Identities=14% Similarity=0.041 Sum_probs=47.2
Q ss_pred cceeeCCCCCEEEEEEeccCC-------CCCCceeEEEEEEcCCCCcccceecccCC----Cccccee---eCCCCC--E
Q 006979 194 ADGIFDPRFNRYVTVREDRRQ-------DALNSTTEIVAIALNGQNIQEPKVLVSGS----DFYAFPR---MDPRGE--R 257 (623)
Q Consensus 194 ~d~~~sPdG~~l~~v~~~~~~-------~~~~~~~~L~~idl~~g~~~~~~~l~~~~----~~~~~p~---wSPDG~--~ 257 (623)
..++++|+.+.|++-..+... .++.....|+.+|+++|+....-|.+... +....|. .-.||+ .
T Consensus 237 ~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~ 316 (527)
T TIGR03075 237 GTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRK 316 (527)
T ss_pred CceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEE
Confidence 345788877766655533111 11223568999999999854434443332 2223343 335887 3
Q ss_pred EEEEEecCCCCCCCceEEEEEEecCCC
Q 006979 258 MAWIEWHHPNMPWDKAELWVGYISENG 284 (623)
Q Consensus 258 la~~~~~~~~~p~~~~~L~v~d~~~~~ 284 (623)
++... .+ ...+|++|..++.
T Consensus 317 ~v~~~-~K------~G~~~vlDr~tG~ 336 (527)
T TIGR03075 317 LLAHA-DR------NGFFYVLDRTNGK 336 (527)
T ss_pred EEEEe-CC------CceEEEEECCCCc
Confidence 44333 33 3458899887764
No 441
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=88.94 E-value=2 Score=43.96 Aligned_cols=88 Identities=13% Similarity=0.086 Sum_probs=54.8
Q ss_pred CCCCcEEEEeCCCCCCCceecCCC-CCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc
Q 006979 162 YKDQRLYKHSIDSKDSSPLPITPD-YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV 240 (623)
Q Consensus 162 ~~~~~l~~~d~~~g~~~~~~Lt~~-~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~ 240 (623)
..+..|-++|+.+. ..++.-.. .-.....++-..|||||.+++.-..+ +.+|+.++.+++.+ .++.
T Consensus 360 sRDdtl~viDlRt~--eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~d---------gsv~iW~v~tgKlE--~~l~ 426 (459)
T KOG0288|consen 360 SRDDTLKVIDLRTK--EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSAD---------GSVYIWSVFTGKLE--KVLS 426 (459)
T ss_pred cCCCceeeeecccc--cEEEEeeccccccccccceeEECCCCceeeeccCC---------CcEEEEEccCceEE--EEec
Confidence 35666888888765 44433221 00011225567899999998876544 67999999999842 2332
Q ss_pred cC--CCcccceeeCCCCCEEEEEE
Q 006979 241 SG--SDFYAFPRMDPRGERMAWIE 262 (623)
Q Consensus 241 ~~--~~~~~~p~wSPDG~~la~~~ 262 (623)
.. ..-....+|+|-|+.|+-..
T Consensus 427 ~s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 427 LSTSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred cCCCCcceEEEEEcCCCchhhccc
Confidence 21 11245578999999887553
No 442
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=88.81 E-value=0.9 Score=40.93 Aligned_cols=35 Identities=20% Similarity=0.107 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh
Q 006979 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL 592 (623)
Q Consensus 556 ~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~ 592 (623)
..+...++....+ ....+|.++|||+||.++..++
T Consensus 12 ~~i~~~~~~~~~~--~p~~~i~v~GHSlGg~lA~l~a 46 (153)
T cd00741 12 NLVLPLLKSALAQ--YPDYKIHVTGHSLGGALAGLAG 46 (153)
T ss_pred HHHHHHHHHHHHH--CCCCeEEEEEcCHHHHHHHHHH
Confidence 3444444444432 2357999999999999998877
No 443
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=88.71 E-value=28 Score=34.84 Aligned_cols=156 Identities=10% Similarity=0.085 Sum_probs=88.0
Q ss_pred CceEEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCC-----CCCCcee
Q 006979 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQ-----DALNSTT 221 (623)
Q Consensus 147 ~~~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~-----~~~~~~~ 221 (623)
+.+..++.++|+++ ..+.||++..... ++++-.- +-.-.|+| ++....+.. -|..-.+
T Consensus 97 I~~V~l~r~riVvv--l~~~I~VytF~~n---~k~l~~~---------et~~NPkG---lC~~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 97 IKAVKLRRDRIVVV--LENKIYVYTFPDN---PKLLHVI---------ETRSNPKG---LCSLCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred eeeEEEcCCeEEEE--ecCeEEEEEcCCC---hhheeee---------ecccCCCc---eEeecCCCCceEEEcCCCccc
Confidence 55677788888887 5677999987643 4444332 11112444 121111100 0122347
Q ss_pred EEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccc
Q 006979 222 EIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE 301 (623)
Q Consensus 222 ~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~ 301 (623)
+|-++|+...+..++..+.....-.+..+.+-||..||-.+. .++-|.+.|..+++.+.+ +-.|.+ . .
T Consensus 160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaSt-------kGTLIRIFdt~~g~~l~E--~RRG~d-~--A 227 (346)
T KOG2111|consen 160 QVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAST-------KGTLIRIFDTEDGTLLQE--LRRGVD-R--A 227 (346)
T ss_pred eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEecc-------CcEEEEEEEcCCCcEeee--eecCCc-h--h
Confidence 788889876541111223222223455779999998886652 245578888887753222 223333 2 4
Q ss_pred cCcCceeCCCCcEEEEEeCCCCeeeEEEEec
Q 006979 302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIE 332 (623)
Q Consensus 302 ~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~ 332 (623)
.+...++|||++++.++.+ .|.-+|+.+..
T Consensus 228 ~iy~iaFSp~~s~LavsSd-KgTlHiF~l~~ 257 (346)
T KOG2111|consen 228 DIYCIAFSPNSSWLAVSSD-KGTLHIFSLRD 257 (346)
T ss_pred eEEEEEeCCCccEEEEEcC-CCeEEEEEeec
Confidence 5678899999994444444 48878876543
No 444
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=88.55 E-value=3 Score=41.40 Aligned_cols=123 Identities=9% Similarity=0.025 Sum_probs=67.2
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCccc---CcCC-HHhHHHHcCceEEEEECCCCCCCCchhHHHhhcc
Q 006979 473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR---GILN-LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLG 548 (623)
Q Consensus 473 ~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~---~~~~-~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~ 548 (623)
..++..++-.. .++.|.||..|.-...... .-|+ ...+.+. +.|.++-+|.+|...-... +..
T Consensus 9 G~v~V~v~G~~--------~~~kp~ilT~HDvGlNh~scF~~ff~~~~m~~i~-~~f~i~Hi~aPGqe~ga~~----~p~ 75 (283)
T PF03096_consen 9 GSVHVTVQGDP--------KGNKPAILTYHDVGLNHKSCFQGFFNFEDMQEIL-QNFCIYHIDAPGQEEGAAT----LPE 75 (283)
T ss_dssp EEEEEEEESS----------TTS-EEEEE--TT--HHHHCHHHHCSHHHHHHH-TTSEEEEEE-TTTSTT---------T
T ss_pred eEEEEEEEecC--------CCCCceEEEeccccccchHHHHHHhcchhHHHHh-hceEEEEEeCCCCCCCccc----ccc
Confidence 35777777443 3467999999976322211 1122 2344444 4699999999996653222 233
Q ss_pred CCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979 549 RWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP 610 (623)
Q Consensus 549 ~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~ 610 (623)
.+....++++.+.+..+.++=.+ +.+..+|--+|+++-...+ .||+++-+.|.+.+...-
T Consensus 76 ~y~yPsmd~LAe~l~~Vl~~f~l--k~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~ 136 (283)
T PF03096_consen 76 GYQYPSMDQLAEMLPEVLDHFGL--KSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTA 136 (283)
T ss_dssp T-----HHHHHCTHHHHHHHHT-----EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S-
T ss_pred cccccCHHHHHHHHHHHHHhCCc--cEEEEEeeccchhhhhhccccCccceeEEEEEecCCCC
Confidence 33333455555555554443123 6789999999999999888 999999999999886543
No 445
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=88.44 E-value=15 Score=40.03 Aligned_cols=217 Identities=15% Similarity=0.140 Sum_probs=112.6
Q ss_pred HhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCC------------CCCCcccCCCC---Cccc------ee
Q 006979 84 VSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKA------------GDEPSDITPKE---YAVR------TT 141 (623)
Q Consensus 84 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~------------gg~~~~l~p~~---~~~r------~~ 141 (623)
..+...++...++.| +..+|-+-+| +|...||-+...+ ++...--+|.. ...+ ..
T Consensus 140 ~~GH~~SvkS~cf~~~n~~vF~tGgR---Dg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~t 216 (720)
T KOG0321|consen 140 NLGHTGSVKSECFMPTNPAVFCTGGR---DGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNT 216 (720)
T ss_pred ecccccccchhhhccCCCcceeeccC---CCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCc
Confidence 344456677888888 8888887766 5888888654321 10000001111 0001 11
Q ss_pred eeecCCceEEEeCC-EEEEEeCCCCcEEEEeCCCCC----CCceecCCCC--CCCCeeecceeeCCCCCEEEEEEeccCC
Q 006979 142 AQEYGGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKD----SSPLPITPDY--GEPLVSYADGIFDPRFNRYVTVREDRRQ 214 (623)
Q Consensus 142 ~~~~g~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~----~~~~~Lt~~~--~~~~~~~~d~~~sPdG~~l~~v~~~~~~ 214 (623)
+.++ +....+.++ .|+=....|+.|-++|+...- .++....... .....-+..+..+.-|.+|++.+-|
T Consensus 217 i~ss-vTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD--- 292 (720)
T KOG0321|consen 217 IFSS-VTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD--- 292 (720)
T ss_pred eeee-eEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC---
Confidence 1111 111222233 333333347779999987420 1122211110 0112234466778888999887764
Q ss_pred CCCCceeEEEEEEcCCCCcccceecccC---CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEE
Q 006979 215 DALNSTTEIVAIALNGQNIQEPKVLVSG---SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC 291 (623)
Q Consensus 215 ~~~~~~~~L~~idl~~g~~~~~~~l~~~---~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~ 291 (623)
+.||.+++.+-... +..+..+ ..|+.--..||||.+|+=.++++ ...+|.++-... ...+
T Consensus 293 ------~sIy~ynm~s~s~s-P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~------~ayiw~vs~~e~----~~~~ 355 (720)
T KOG0321|consen 293 ------NSIYFYNMRSLSIS-PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDE------QAYIWVVSSPEA----PPAL 355 (720)
T ss_pred ------CcEEEEeccccCcC-chhhccCcccceeeeeeecCCCCceEeccCCCc------ceeeeeecCccC----Chhh
Confidence 67999998775411 2222333 23555567999999988766664 334555543222 3445
Q ss_pred EcCCCCCccccCcCceeCCC--CcEEEEEeCCCCeeeEEEE
Q 006979 292 VAGFDPTIVESPTEPKWSSK--GELFFVTDRKNGFWNLHKW 330 (623)
Q Consensus 292 ~~~~~~~~~~~~~~~~ws~D--G~l~~~~~~~~g~~~L~~~ 330 (623)
+.+.. ..+..++|.|- +.++-.+++ -...||++
T Consensus 356 l~Ght----~eVt~V~w~pS~~t~v~TcSdD--~~~kiW~l 390 (720)
T KOG0321|consen 356 LLGHT----REVTTVRWLPSATTPVATCSDD--FRVKIWRL 390 (720)
T ss_pred hhCcc----eEEEEEeeccccCCCceeeccC--cceEEEec
Confidence 55655 55667778764 445544443 33455554
No 446
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=88.36 E-value=4.1 Score=43.54 Aligned_cols=139 Identities=17% Similarity=0.233 Sum_probs=80.6
Q ss_pred EEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCC----------------HHhHHHHcCceE
Q 006979 463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN----------------LSIQYWTSRGWA 526 (623)
Q Consensus 463 ~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~----------------~~~~~~a~~G~~ 526 (623)
-+.+... .+..+..|+++..+. .+.-|+||++.|||+=....++. ...-.|.+. -.
T Consensus 48 Yv~v~~~-~~~~LFYwf~eS~~~------P~~dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWnk~-aN 119 (454)
T KOG1282|consen 48 YVTVNES-EGRQLFYWFFESENN------PETDPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWNKE-AN 119 (454)
T ss_pred eEECCCC-CCceEEEEEEEccCC------CCCCCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCcccccc-cc
Confidence 3444444 678888888876541 34568999999998532211110 011113332 24
Q ss_pred EEEECCCCCCCCchhHHHhhcc-CCc-cchHHHHHH-HHHHHHhCCCCCCCceEEEEcChHHHHHHHHh----cCC----
Q 006979 527 FVDVNYGGSTGYGREFRERLLG-RWG-IVDVNDCCS-CATFLVGSGKADEKRLCITGGSAGGYTTLAAL----AFR---- 595 (623)
Q Consensus 527 v~~~d~rGs~~~g~~~~~~~~~-~~g-~~~~~D~~~-~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~----~~~---- 595 (623)
++-+|-+=+.|| +|.+.... ..+ ....+|... ..+|+.+.+..-.+.+.|.|-||+|..+-.++ .+.
T Consensus 120 iLfLd~PvGvGF--SYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~ 197 (454)
T KOG1282|consen 120 ILFLDQPVGVGF--SYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCC 197 (454)
T ss_pred EEEEecCCcCCc--cccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhcccccc
Confidence 555665533333 23221111 111 123455554 45688888877778999999999997665544 121
Q ss_pred ---CceeEEEecccCCCHH
Q 006979 596 ---DTFKAGASLYGVSIPV 611 (623)
Q Consensus 596 ---~~f~a~v~~~g~~d~~ 611 (623)
=-+|+.+...|++|..
T Consensus 198 ~~~iNLkG~~IGNg~td~~ 216 (454)
T KOG1282|consen 198 KPNINLKGYAIGNGLTDPE 216 (454)
T ss_pred CCcccceEEEecCcccCcc
Confidence 1478999999998864
No 447
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=88.30 E-value=4.1 Score=37.15 Aligned_cols=58 Identities=12% Similarity=0.066 Sum_probs=44.8
Q ss_pred cCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979 548 GRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS 608 (623)
Q Consensus 548 ~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~ 608 (623)
.+|-....+|-++.++..+..- ++.+.+++||.|+-+++..+ .....++++..++|..
T Consensus 36 ~~w~~P~~~dWi~~l~~~v~a~---~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd 94 (181)
T COG3545 36 DDWEAPVLDDWIARLEKEVNAA---EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPD 94 (181)
T ss_pred CCCCCCCHHHHHHHHHHHHhcc---CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCC
Confidence 3466667888888887665542 44599999999999999988 4455789999888874
No 448
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=87.99 E-value=14 Score=39.34 Aligned_cols=57 Identities=18% Similarity=0.207 Sum_probs=31.0
Q ss_pred ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEE
Q 006979 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT 318 (623)
Q Consensus 246 ~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~ 318 (623)
...-+|+|||.-|.-.. +. ..|-+..-.+- .+..+.... ..+.-++|.|+.. ++|..
T Consensus 107 ~~~gRW~~dGtgLlt~G--ED------G~iKiWSrsGM----LRStl~Q~~----~~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 107 ISSGRWSPDGAGLLTAG--ED------GVIKIWSRSGM----LRSTVVQNE----ESIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred hhhcccCCCCceeeeec--CC------ceEEEEeccch----HHHHHhhcC----ceeEEEEECCCCCceEEec
Confidence 34468999999886443 21 12333332221 122233333 4566788988877 66554
No 449
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.78 E-value=24 Score=37.16 Aligned_cols=206 Identities=9% Similarity=0.001 Sum_probs=112.7
Q ss_pred CccccCCCCCCCcCCHHHHhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCc-ccCCCCCccceeee
Q 006979 66 DKITAPYGSWKSPLTADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPS-DITPKEYAVRTTAQ 143 (623)
Q Consensus 66 ~~~~~~~g~w~s~~t~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~-~l~p~~~~~r~~~~ 143 (623)
...+.-|+ -++..-++.+.+.........++| ++.++-.. +|+.-..+|-...+ ..+ .+....--+|
T Consensus 89 sG~V~vfD-~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~---sDd~v~k~~d~s~a---~v~~~l~~htDYVR---- 157 (487)
T KOG0310|consen 89 SGHVKVFD-MKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSG---SDDKVVKYWDLSTA---YVQAELSGHTDYVR---- 157 (487)
T ss_pred cCcEEEec-cccHHHHHHHhhccCceeEEEecccCCeEEEec---CCCceEEEEEcCCc---EEEEEecCCcceeE----
Confidence 34444454 244334555666555667888998 66665433 22344444433322 211 1221110111
Q ss_pred ecCCceEEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 006979 144 EYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (623)
Q Consensus 144 ~~g~~~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L 223 (623)
-+++.+..+.++++..-|+.|-++|..+. ..+.++-. .+....+..+-|.|..|+-... +.+
T Consensus 158 ---~g~~~~~~~hivvtGsYDg~vrl~DtR~~--~~~v~eln---hg~pVe~vl~lpsgs~iasAgG----------n~v 219 (487)
T KOG0310|consen 158 ---CGDISPANDHIVVTGSYDGKVRLWDTRSL--TSRVVELN---HGCPVESVLALPSGSLIASAGG----------NSV 219 (487)
T ss_pred ---eeccccCCCeEEEecCCCceEEEEEeccC--CceeEEec---CCCceeeEEEcCCCCEEEEcCC----------CeE
Confidence 23444455689999888898989988764 23333321 1355667788898887665322 568
Q ss_pred EEEEcCCCCcccceeccc---CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCcc
Q 006979 224 VAIALNGQNIQEPKVLVS---GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 300 (623)
Q Consensus 224 ~~idl~~g~~~~~~~l~~---~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~ 300 (623)
-++|+-+|. +.++. ...-+...++.-|+++|+-.+-|.. +-++|+..- .++.+.. +.
T Consensus 220 kVWDl~~G~----qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~--------VKVfd~t~~------Kvv~s~~--~~ 279 (487)
T KOG0310|consen 220 KVWDLTTGG----QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH--------VKVFDTTNY------KVVHSWK--YP 279 (487)
T ss_pred EEEEecCCc----eehhhhhcccceEEEEEeecCCceEeecccccc--------eEEEEccce------EEEEeee--cc
Confidence 888998653 22322 2334566778889998876655542 556664322 2222211 01
Q ss_pred ccCcCceeCCCCcEEEEEeC
Q 006979 301 ESPTEPKWSSKGELFFVTDR 320 (623)
Q Consensus 301 ~~~~~~~ws~DG~l~~~~~~ 320 (623)
..+-+..-+||++.+++...
T Consensus 280 ~pvLsiavs~dd~t~viGms 299 (487)
T KOG0310|consen 280 GPVLSIAVSPDDQTVVIGMS 299 (487)
T ss_pred cceeeEEecCCCceEEEecc
Confidence 34567778888884444443
No 450
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.21 E-value=21 Score=38.40 Aligned_cols=139 Identities=14% Similarity=0.113 Sum_probs=58.8
Q ss_pred CCHHHHhccCCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EE
Q 006979 79 LTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TV 157 (623)
Q Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l 157 (623)
++.+.+......+..+..+|.++..-+. ++|.+.|+... +.|....+. +..++|... ..
T Consensus 23 l~~k~lg~~~~~p~~ls~npngr~v~V~----g~geY~iyt~~---------------~~r~k~~G~-g~~~vw~~~n~y 82 (443)
T PF04053_consen 23 LSVKELGSCEIYPQSLSHNPNGRFVLVC----GDGEYEIYTAL---------------AWRNKAFGS-GLSFVWSSRNRY 82 (443)
T ss_dssp ---EEEEE-SS--SEEEE-TTSSEEEEE----ETTEEEEEETT---------------TTEEEEEEE--SEEEE-TSSEE
T ss_pred EEeccCCCCCcCCeeEEECCCCCEEEEE----cCCEEEEEEcc---------------CCcccccCc-eeEEEEecCccE
Confidence 3444444455567888899833333332 24777777511 112222222 334555544 43
Q ss_pred EEEeCCCCcEEE-EeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 006979 158 IFSNYKDQRLYK-HSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP 236 (623)
Q Consensus 158 ~f~~~~~~~l~~-~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~ 236 (623)
++.+ ..+.|-+ -+.+.. ..+.++.. .. .+--|. |.. ++++.+ ..|..+|..+++. +
T Consensus 83 Av~~-~~~~I~I~kn~~~~--~~k~i~~~-----~~-~~~If~--G~L-L~~~~~---------~~i~~yDw~~~~~--i 139 (443)
T PF04053_consen 83 AVLE-SSSTIKIYKNFKNE--VVKSIKLP-----FS-VEKIFG--GNL-LGVKSS---------DFICFYDWETGKL--I 139 (443)
T ss_dssp EEE--TTS-EEEEETTEE---TT-----S-----S--EEEEE---SSS-EEEEET---------TEEEEE-TTT--E--E
T ss_pred EEEE-CCCeEEEEEcCccc--cceEEcCC-----cc-cceEEc--CcE-EEEECC---------CCEEEEEhhHcce--e
Confidence 3333 3444555 344322 22344432 11 111232 664 444542 3599999998863 4
Q ss_pred eecccCCCcccceeeCCCCCEEEEEE
Q 006979 237 KVLVSGSDFYAFPRMDPRGERMAWIE 262 (623)
Q Consensus 237 ~~l~~~~~~~~~p~wSPDG~~la~~~ 262 (623)
+.+.-.+ +....||+||++++.+.
T Consensus 140 ~~i~v~~--vk~V~Ws~~g~~val~t 163 (443)
T PF04053_consen 140 RRIDVSA--VKYVIWSDDGELVALVT 163 (443)
T ss_dssp EEESS-E---EEEEE-TTSSEEEEE-
T ss_pred eEEecCC--CcEEEEECCCCEEEEEe
Confidence 4444222 23457999999999986
No 451
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.11 E-value=29 Score=33.26 Aligned_cols=145 Identities=9% Similarity=0.033 Sum_probs=78.3
Q ss_pred EEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccce
Q 006979 158 IFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK 237 (623)
Q Consensus 158 ~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~ 237 (623)
+.+...|..++++|+.+| ...+++... ....+..+|..+.. +++.-. ....+-++|-.+...++++
T Consensus 74 f~s~GgDk~v~vwDV~TG-kv~Rr~rgH----~aqVNtV~fNeesS-Vv~Sgs--------fD~s~r~wDCRS~s~ePiQ 139 (307)
T KOG0316|consen 74 FASCGGDKAVQVWDVNTG-KVDRRFRGH----LAQVNTVRFNEESS-VVASGS--------FDSSVRLWDCRSRSFEPIQ 139 (307)
T ss_pred cccCCCCceEEEEEcccC-eeeeecccc----cceeeEEEecCcce-EEEecc--------ccceeEEEEcccCCCCccc
Confidence 334445567999999998 445555543 45667777776664 444322 1155777788776544444
Q ss_pred ecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEE
Q 006979 238 VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFV 317 (623)
Q Consensus 238 ~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~ 317 (623)
.|.+..+-+.....+ +..|.--+. ...+..+|+..+. +..+.- . ..+....+++||+...+
T Consensus 140 ildea~D~V~Si~v~--~heIvaGS~--------DGtvRtydiR~G~------l~sDy~-g--~pit~vs~s~d~nc~La 200 (307)
T KOG0316|consen 140 ILDEAKDGVSSIDVA--EHEIVAGSV--------DGTVRTYDIRKGT------LSSDYF-G--HPITSVSFSKDGNCSLA 200 (307)
T ss_pred hhhhhcCceeEEEec--ccEEEeecc--------CCcEEEEEeecce------eehhhc-C--CcceeEEecCCCCEEEE
Confidence 444444444433332 222322221 2236677776551 111111 0 34567889999994444
Q ss_pred EeCCCCeeeEEEEecCCCeEE
Q 006979 318 TDRKNGFWNLHKWIESNNEVL 338 (623)
Q Consensus 318 ~~~~~g~~~L~~~d~~~~~~~ 338 (623)
+.- ++ .|..+|-++|++-
T Consensus 201 ~~l-~s--tlrLlDk~tGklL 218 (307)
T KOG0316|consen 201 SSL-DS--TLRLLDKETGKLL 218 (307)
T ss_pred eec-cc--eeeecccchhHHH
Confidence 433 23 4556777777643
No 452
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=87.00 E-value=29 Score=38.19 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=44.7
Q ss_pred eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEE
Q 006979 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMA 259 (623)
Q Consensus 192 ~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la 259 (623)
...|.++-|||..|+.... +.|+++|...|.. .+.|-...|.+.-.+||.||++.|
T Consensus 14 ci~d~afkPDGsqL~lAAg----------~rlliyD~ndG~l--lqtLKgHKDtVycVAys~dGkrFA 69 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG----------SRLLVYDTSDGTL--LQPLKGHKDTVYCVAYAKDGKRFA 69 (1081)
T ss_pred chheeEECCCCceEEEecC----------CEEEEEeCCCccc--ccccccccceEEEEEEccCCceec
Confidence 4678999999999988654 6799999988763 556666667777789999999765
No 453
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.84 E-value=26 Score=33.73 Aligned_cols=193 Identities=11% Similarity=0.076 Sum_probs=0.0
Q ss_pred CCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC---EEEEEeCCCCc--EEEEeCCCCCCCceecCCCC
Q 006979 112 AGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD---TVIFSNYKDQR--LYKHSIDSKDSSPLPITPDY 186 (623)
Q Consensus 112 ~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d---~l~f~~~~~~~--l~~~d~~~g~~~~~~Lt~~~ 186 (623)
+|+..||+...+ ...+...-. .|+-..-+.++.+. .+++....||. |..++-+++....+.....
T Consensus 79 DgkVIiWke~~g---~w~k~~e~~------~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH- 148 (299)
T KOG1332|consen 79 DGKVIIWKEENG---RWTKAYEHA------AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAH- 148 (299)
T ss_pred CceEEEEecCCC---chhhhhhhh------hhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcc-
Q ss_pred CCCCeeecceeeCCC---C-----------CEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeC
Q 006979 187 GEPLVSYADGIFDPR---F-----------NRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMD 252 (623)
Q Consensus 187 ~~~~~~~~d~~~sPd---G-----------~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wS 252 (623)
..-.+..+|.|- | ++++----| +.+-+.+.+.+.....+.|....+++...+|.
T Consensus 149 ---~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcD---------n~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwa 216 (299)
T KOG1332|consen 149 ---EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCD---------NLVKIWKFDSDSWKLERTLEGHKDWVRDVAWA 216 (299)
T ss_pred ---ccccceeeecCcCCCccccccCcccccceeeccCCc---------cceeeeecCCcchhhhhhhhhcchhhhhhhhc
Q ss_pred CCC----CEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEE
Q 006979 253 PRG----ERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLH 328 (623)
Q Consensus 253 PDG----~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~ 328 (623)
|.- .+||-.+.|. ..-||..+.+.+.- ...++...+ ..+....||.-|.++-++.. ++.-.||
T Consensus 217 P~~gl~~s~iAS~SqDg------~viIwt~~~e~e~w--k~tll~~f~----~~~w~vSWS~sGn~LaVs~G-dNkvtlw 283 (299)
T KOG1332|consen 217 PSVGLPKSTIASCSQDG------TVIIWTKDEEYEPW--KKTLLEEFP----DVVWRVSWSLSGNILAVSGG-DNKVTLW 283 (299)
T ss_pred cccCCCceeeEEecCCC------cEEEEEecCccCcc--cccccccCC----cceEEEEEeccccEEEEecC-CcEEEEE
Q ss_pred EEecCCCeEEEE
Q 006979 329 KWIESNNEVLAI 340 (623)
Q Consensus 329 ~~d~~~~~~~~l 340 (623)
+-+. .|+.+++
T Consensus 284 ke~~-~Gkw~~v 294 (299)
T KOG1332|consen 284 KENV-DGKWEEV 294 (299)
T ss_pred EeCC-CCcEEEc
No 454
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=86.75 E-value=11 Score=41.57 Aligned_cols=115 Identities=12% Similarity=0.133 Sum_probs=67.3
Q ss_pred eeeCCCCCEEEEEEecCCC------------CCCCceEEEEEEecCCCc----eeeeEEEcCCC-------------CCc
Q 006979 249 PRMDPRGERMAWIEWHHPN------------MPWDKAELWVGYISENGD----VYKRVCVAGFD-------------PTI 299 (623)
Q Consensus 249 p~wSPDG~~la~~~~~~~~------------~p~~~~~L~v~d~~~~~~----~~~~~~~~~~~-------------~~~ 299 (623)
..+.|....||+...+... ..+....||.++.+.+.. .....++.+.+ ..+
T Consensus 355 i~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~~ 434 (524)
T PF05787_consen 355 ITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGSNKCDDNG 434 (524)
T ss_pred eeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccccCcccCCC
Confidence 3478887788887655441 123456788887665411 11111222211 123
Q ss_pred cccCcCceeCCCCcEEEEEeCCCCeee--------------------EEEEecCCCeEEEEe--ecccccccccccccCc
Q 006979 300 VESPTEPKWSSKGELFFVTDRKNGFWN--------------------LHKWIESNNEVLAIY--SLDAEFSRPLWVFGIN 357 (623)
Q Consensus 300 ~~~~~~~~ws~DG~l~~~~~~~~g~~~--------------------L~~~d~~~~~~~~l~--~~~~~~~~~~w~~~~~ 357 (623)
..++....++++|.|+++.|....... ++..++..++.+++. +..++++++.|++
T Consensus 435 f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~tG~~fsp--- 511 (524)
T PF05787_consen 435 FASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEITGPCFSP--- 511 (524)
T ss_pred cCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccccceECC---
Confidence 346678899999988777765222111 334456667766665 5567888887765
Q ss_pred ceeEEeecCCCCEEEEEE
Q 006979 358 SYEIIQSHGEKNLIACSY 375 (623)
Q Consensus 358 ~~~~l~~s~~~~~l~~~~ 375 (623)
|++.|++..
T Consensus 512 ---------Dg~tlFvni 520 (524)
T PF05787_consen 512 ---------DGRTLFVNI 520 (524)
T ss_pred ---------CCCEEEEEE
Confidence 888877654
No 455
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=86.71 E-value=56 Score=36.18 Aligned_cols=94 Identities=11% Similarity=0.030 Sum_probs=51.0
Q ss_pred cCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEee-ccc-----ccccccccccCcceeEEeecCCCCEEEEE
Q 006979 302 SPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDA-----EFSRPLWVFGINSYEIIQSHGEKNLIACS 374 (623)
Q Consensus 302 ~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~-~~~-----~~~~~~w~~~~~~~~~l~~s~~~~~l~~~ 374 (623)
.+....|.|++. |+-.+.+ ...-+|+-|-.+|-+..... ++. .|-+..|++ ++ .+++.
T Consensus 269 WV~sv~W~p~~~~LLSASaD--ksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~------------n~-~~ii~ 333 (764)
T KOG1063|consen 269 WVYSVWWHPEGLDLLSASAD--KSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP------------NS-NVIIA 333 (764)
T ss_pred ceEEEEEccchhhheecccC--cceEEEecCCccceEEEEEEeecccccccceeeEEEcC------------CC-CEEEE
Confidence 345678999995 4433332 44556666555665554432 111 122223332 44 46667
Q ss_pred EEECCeEEEEEEeCCCCceeecccCCcc---eEee--eecCC
Q 006979 375 YRQNGRSYLGILDDFGHSLSLLDIPFTD---IDNI--TLGND 411 (623)
Q Consensus 375 ~~~~g~~~L~~~d~~~~~~~~lt~~~~~---v~~~--~~~~~ 411 (623)
..+.|..|++. +.+...+.+....-+. |..+ ++.|.
T Consensus 334 ~g~~Gg~hlWk-t~d~~~w~~~~~iSGH~~~V~dv~W~psGe 374 (764)
T KOG1063|consen 334 HGRTGGFHLWK-TKDKTFWTQEPVISGHVDGVKDVDWDPSGE 374 (764)
T ss_pred ecccCcEEEEe-ccCccceeeccccccccccceeeeecCCCC
Confidence 77888899998 5555666654433333 4444 44455
No 456
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.44 E-value=6.5 Score=45.48 Aligned_cols=159 Identities=9% Similarity=0.011 Sum_probs=87.8
Q ss_pred CceEEEeCC--EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEE-EeccCCCCCCceeEE
Q 006979 147 GGAFRIFGD--TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTV-REDRRQDALNSTTEI 223 (623)
Q Consensus 147 ~~~~~~s~d--~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v-~~~~~~~~~~~~~~L 223 (623)
+.+++|... .|+.+...+++..++|++.. .....+... ....+.....|+||+..-+.+ .++... ..|
T Consensus 164 I~~lsWNrkvqhILAS~s~sg~~~iWDlr~~-~pii~ls~~--~~~~~~S~l~WhP~~aTql~~As~dd~~------Pvi 234 (1049)
T KOG0307|consen 164 IKCLSWNRKVSHILASGSPSGRAVIWDLRKK-KPIIKLSDT--PGRMHCSVLAWHPDHATQLLVASGDDSA------PVI 234 (1049)
T ss_pred ceEeccchhhhHHhhccCCCCCceeccccCC-CcccccccC--CCccceeeeeeCCCCceeeeeecCCCCC------cee
Confidence 455566543 67777777778889999754 234445543 223557789999988644444 333322 334
Q ss_pred EEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccC
Q 006979 224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP 303 (623)
Q Consensus 224 ~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 303 (623)
-..|+.--.. .++.+.....-.....|++.+.+++..+.. ..++++.+.++++.+ --+.... ..+
T Consensus 235 qlWDlR~ass-P~k~~~~H~~GilslsWc~~D~~lllSsgk-------D~~ii~wN~~tgEvl---~~~p~~~----nW~ 299 (1049)
T KOG0307|consen 235 QLWDLRFASS-PLKILEGHQRGILSLSWCPQDPRLLLSSGK-------DNRIICWNPNTGEVL---GELPAQG----NWC 299 (1049)
T ss_pred EeecccccCC-chhhhcccccceeeeccCCCCchhhhcccC-------CCCeeEecCCCceEe---eecCCCC----cce
Confidence 4556543221 134443333334557899988777666533 234777777765221 1122112 245
Q ss_pred cCceeCCCCc-EEEEEeCCCCeeeEEEE
Q 006979 304 TEPKWSSKGE-LFFVTDRKNGFWNLHKW 330 (623)
Q Consensus 304 ~~~~ws~DG~-l~~~~~~~~g~~~L~~~ 330 (623)
..+.|.|..- ++-++.. +|.-.||.+
T Consensus 300 fdv~w~pr~P~~~A~asf-dgkI~I~sl 326 (1049)
T KOG0307|consen 300 FDVQWCPRNPSVMAAASF-DGKISIYSL 326 (1049)
T ss_pred eeeeecCCCcchhhhhee-ccceeeeee
Confidence 6788988654 4434433 566666644
No 457
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=86.44 E-value=20 Score=38.78 Aligned_cols=112 Identities=10% Similarity=0.036 Sum_probs=60.8
Q ss_pred eeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc----cCCCcccceeeCCCCCEEEEEEecCCCCCCC
Q 006979 196 GIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV----SGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 271 (623)
Q Consensus 196 ~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~----~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~ 271 (623)
..||-...+.+++.|..-....++.-+.++++...++ ++.+. .-......-++||+.++++.--.|.
T Consensus 211 ~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~k---lqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~Dg------ 281 (545)
T PF11768_consen 211 VEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNK---LQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDG------ 281 (545)
T ss_pred EEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCc---eeEEEEEEEecCCcceEEecCcccceEEEEecCC------
Confidence 4455533334444443211112233445555655554 33221 1112234467999999998776554
Q ss_pred ceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEE
Q 006979 272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLH 328 (623)
Q Consensus 272 ~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~ 328 (623)
.|.++|...+- .. ..... ..+...+|.|||.++++.+. +|.-+++
T Consensus 282 --SiiLyD~~~~~----t~-~~ka~----~~P~~iaWHp~gai~~V~s~-qGelQ~F 326 (545)
T PF11768_consen 282 --SIILYDTTRGV----TL-LAKAE----FIPTLIAWHPDGAIFVVGSE-QGELQCF 326 (545)
T ss_pred --eEEEEEcCCCe----ee-eeeec----ccceEEEEcCCCcEEEEEcC-CceEEEE
Confidence 38888876652 11 11222 44568899999987767665 5655554
No 458
>PLN02606 palmitoyl-protein thioesterase
Probab=86.04 E-value=6.6 Score=39.36 Aligned_cols=102 Identities=14% Similarity=0.090 Sum_probs=55.5
Q ss_pred CCCCEEEEecCCCCCcccCcCCHHhHHHHc-CceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCC
Q 006979 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 571 (623)
Q Consensus 493 ~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~-~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~ 571 (623)
.+.|+|| .||-......+.+....+++.+ .|.-+..+- -|.+ .-..| ++. ..+-+..+-+.|.+.+..
T Consensus 25 ~~~PvVi-wHGlgD~~~~~~~~~~~~~i~~~~~~pg~~v~-ig~~-~~~s~-------~~~-~~~Qv~~vce~l~~~~~L 93 (306)
T PLN02606 25 LSVPFVL-FHGFGGECSNGKVSNLTQFLINHSGYPGTCVE-IGNG-VQDSL-------FMP-LRQQASIACEKIKQMKEL 93 (306)
T ss_pred CCCCEEE-ECCCCcccCCchHHHHHHHHHhCCCCCeEEEE-ECCC-ccccc-------ccC-HHHHHHHHHHHHhcchhh
Confidence 3567666 7998555555566667777752 365444443 2211 10011 111 112223333334333323
Q ss_pred CCCceEEEEcChHHHHHHHHh-cCCC--ceeEEEeccc
Q 006979 572 DEKRLCITGGSAGGYTTLAAL-AFRD--TFKAGASLYG 606 (623)
Q Consensus 572 d~~rv~i~G~S~GG~~~~~~~-~~~~--~f~a~v~~~g 606 (623)
.+-+-++|+|.||.+.=.++ +.|+ .++-.|++.|
T Consensus 94 -~~G~naIGfSQGglflRa~ierc~~~p~V~nlISlgg 130 (306)
T PLN02606 94 -SEGYNIVAESQGNLVARGLIEFCDNAPPVINYVSLGG 130 (306)
T ss_pred -cCceEEEEEcchhHHHHHHHHHCCCCCCcceEEEecC
Confidence 24689999999999998888 6655 3666666544
No 459
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.03 E-value=11 Score=36.54 Aligned_cols=51 Identities=20% Similarity=0.373 Sum_probs=31.3
Q ss_pred HHHHH-HHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCC--ceeEEEeccc
Q 006979 555 VNDCC-SCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRD--TFKAGASLYG 606 (623)
Q Consensus 555 ~~D~~-~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~--~f~a~v~~~g 606 (623)
.+|.+ --++++.+. ..-..||.|+|||-|.||++.++ ..-. .+..+++..|
T Consensus 91 L~~QV~HKlaFik~~-~Pk~~ki~iiGHSiGaYm~Lqil~~~k~~~~vqKa~~LFP 145 (301)
T KOG3975|consen 91 LQDQVDHKLAFIKEY-VPKDRKIYIIGHSIGAYMVLQILPSIKLVFSVQKAVLLFP 145 (301)
T ss_pred hhhHHHHHHHHHHHh-CCCCCEEEEEecchhHHHHHHHhhhcccccceEEEEEecc
Confidence 34443 334555543 22346999999999999999998 3322 2344455555
No 460
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=85.84 E-value=27 Score=35.18 Aligned_cols=205 Identities=12% Similarity=0.039 Sum_probs=89.4
Q ss_pred ceEEcCCCcEEEEeecC-CC------CCceEEEEcCCCCCCCC-cccCCCCCccceeeeecCCceEEEeC-------CEE
Q 006979 93 GTAVDGHGRLIWLESRP-TE------AGRGVLVKEPAKAGDEP-SDITPKEYAVRTTAQEYGGGAFRIFG-------DTV 157 (623)
Q Consensus 93 ~~~~~~~~~~~~l~~~~-~e------~g~~~l~~~~~~~gg~~-~~l~p~~~~~r~~~~~~g~~~~~~s~-------d~l 157 (623)
.+.+++.+++|.++... .. .+...|+.++..++... +-.+|+..-.. ......+.++. ..+
T Consensus 5 ~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~----~s~lndl~VD~~~~~~~~~~a 80 (287)
T PF03022_consen 5 RVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPP----DSFLNDLVVDVRDGNCDDGFA 80 (287)
T ss_dssp EEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-T----CGGEEEEEEECTTTTS-SEEE
T ss_pred EEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHccc----ccccceEEEEccCCCCcceEE
Confidence 34555567788887332 11 23457887776643211 22234331110 00011233332 245
Q ss_pred EEEeCCCCcEEEEeCCCCCCCceecCCCC---CCCCee---------ecc----eee---CCCCCEEEEEEeccCCCCCC
Q 006979 158 IFSNYKDQRLYKHSIDSKDSSPLPITPDY---GEPLVS---------YAD----GIF---DPRFNRYVTVREDRRQDALN 218 (623)
Q Consensus 158 ~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~---~~~~~~---------~~d----~~~---sPdG~~l~~v~~~~~~~~~~ 218 (623)
|+++.....|.++|+.++ ...++.... ++.... ..+ .+. +|||++|+|..-..
T Consensus 81 YItD~~~~glIV~dl~~~--~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss------ 152 (287)
T PF03022_consen 81 YITDSGGPGLIVYDLATG--KSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS------ 152 (287)
T ss_dssp EEEETTTCEEEEEETTTT--EEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-------
T ss_pred EEeCCCcCcEEEEEccCC--cEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC------
Confidence 566655567999999876 444443320 110011 111 123 44777776643221
Q ss_pred ceeEEEEEEcC---CCCc-------ccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceee
Q 006979 219 STTEIVAIALN---GQNI-------QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK 288 (623)
Q Consensus 219 ~~~~L~~idl~---~g~~-------~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~ 288 (623)
..+|.++.+ .... ..++.+..-.....+...+++|. |+|.... ...|+..+.++.=....
T Consensus 153 --~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~~~~-------~~aI~~w~~~~~~~~~~ 222 (287)
T PF03022_consen 153 --RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFTDVE-------QNAIGCWDPDGPYTPEN 222 (287)
T ss_dssp --SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEEECC-------CTEEEEEETTTSB-GCC
T ss_pred --CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEecCC-------CCeEEEEeCCCCcCccc
Confidence 458888742 1110 01122211111233456788775 7777644 33588888765211012
Q ss_pred eEEEcCCCCCccccCcCceeCC--CCcEEEEEeC
Q 006979 289 RVCVAGFDPTIVESPTEPKWSS--KGELFFVTDR 320 (623)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~ws~--DG~l~~~~~~ 320 (623)
..++...+ .....+..+.+.+ ||.|++++++
T Consensus 223 ~~~l~~d~-~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 223 FEILAQDP-RTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp EEEEEE-C-C-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred hheeEEcC-ceeeccceeeeccccCceEEEEECc
Confidence 22333222 1123556777777 7778887765
No 461
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=85.82 E-value=41 Score=33.69 Aligned_cols=151 Identities=15% Similarity=0.119 Sum_probs=77.0
Q ss_pred CCceEEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCC--EEEEEEeccCCCCCCceeEE
Q 006979 146 GGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFN--RYVTVREDRRQDALNSTTEI 223 (623)
Q Consensus 146 g~~~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~--~l~~v~~~~~~~~~~~~~~L 223 (623)
.+.+.+++. .-+.+...|.+|+++|+... .+...|... ....+...|+|+-. +|+-..+| +.|
T Consensus 45 sitavAVs~-~~~aSGssDetI~IYDm~k~-~qlg~ll~H----agsitaL~F~~~~S~shLlS~sdD---------G~i 109 (362)
T KOG0294|consen 45 SITALAVSG-PYVASGSSDETIHIYDMRKR-KQLGILLSH----AGSITALKFYPPLSKSHLLSGSDD---------GHI 109 (362)
T ss_pred ceeEEEecc-eeEeccCCCCcEEEEeccch-hhhcceecc----ccceEEEEecCCcchhheeeecCC---------CcE
Confidence 355566553 23334445667999999753 122222221 34566666776653 44443443 446
Q ss_pred EEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccC
Q 006979 224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP 303 (623)
Q Consensus 224 ~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 303 (623)
.+.+... +.-+..+-....-++..+..|.|| ||..-..+ ..|...++-.+.. ...+-.. ...
T Consensus 110 ~iw~~~~--W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D-------~~lr~WNLV~Gr~--a~v~~L~------~~a 171 (362)
T KOG0294|consen 110 IIWRVGS--WELLKSLKAHKGQVTDLSIHPSGK-LALSVGGD-------QVLRTWNLVRGRV--AFVLNLK------NKA 171 (362)
T ss_pred EEEEcCC--eEEeeeecccccccceeEecCCCc-eEEEEcCC-------ceeeeehhhcCcc--ceeeccC------Ccc
Confidence 6666533 211233332333367788999998 66544222 1256666655521 1111111 223
Q ss_pred cCceeCCCCcEEEEEeCCCCeeeEEEEe
Q 006979 304 TEPKWSSKGELFFVTDRKNGFWNLHKWI 331 (623)
Q Consensus 304 ~~~~ws~DG~l~~~~~~~~g~~~L~~~d 331 (623)
..+.|+|.|..|++.-+ ..-.+|..+
T Consensus 172 t~v~w~~~Gd~F~v~~~--~~i~i~q~d 197 (362)
T KOG0294|consen 172 TLVSWSPQGDHFVVSGR--NKIDIYQLD 197 (362)
T ss_pred eeeEEcCCCCEEEEEec--cEEEEEecc
Confidence 45899999984444443 233455443
No 462
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=85.76 E-value=45 Score=34.21 Aligned_cols=138 Identities=13% Similarity=0.062 Sum_probs=69.4
Q ss_pred ccCceEEcCCCcEEEEeecC-CCCCceEEEEcCCCCCCCC-ccc-CCCCCccc----eeeee-cCCceEEEeCC--EEEE
Q 006979 90 RLGGTAVDGHGRLIWLESRP-TEAGRGVLVKEPAKAGDEP-SDI-TPKEYAVR----TTAQE-YGGGAFRIFGD--TVIF 159 (623)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~~~-~e~g~~~l~~~~~~~gg~~-~~l-~p~~~~~r----~~~~~-~g~~~~~~s~d--~l~f 159 (623)
..+++++.+++.+||..-.. .......|++++.. |.. +.+ +|..+... ..... .|..+.++++| .++.
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~ 163 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA 163 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence 45678883377777765111 00012678888876 333 333 45544211 11112 34456667666 3544
Q ss_pred EeCCC---------------CcEEEEeCCCCCCCce----ecCCCC-CCCCeeecceeeCCCCCEEEEEEeccCCCCCCc
Q 006979 160 SNYKD---------------QRLYKHSIDSKDSSPL----PITPDY-GEPLVSYADGIFDPRFNRYVTVREDRRQDALNS 219 (623)
Q Consensus 160 ~~~~~---------------~~l~~~d~~~g~~~~~----~Lt~~~-~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~ 219 (623)
..+.. -+|+.+|..+...... ++.... ........+..+-||++.|+.-|..... ...
T Consensus 164 ~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~--~~~ 241 (326)
T PF13449_consen 164 AMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPG--TGN 241 (326)
T ss_pred EECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCC--ccc
Confidence 43221 2477777765201111 222100 0024566788889999866554442221 224
Q ss_pred eeEEEEEEcCCC
Q 006979 220 TTEIVAIALNGQ 231 (623)
Q Consensus 220 ~~~L~~idl~~g 231 (623)
...||.+++...
T Consensus 242 ~~ri~~v~l~~a 253 (326)
T PF13449_consen 242 YKRIYRVDLSDA 253 (326)
T ss_pred eEEEEEEEcccc
Confidence 578999998653
No 463
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=85.40 E-value=5.4 Score=33.24 Aligned_cols=16 Identities=19% Similarity=0.410 Sum_probs=13.4
Q ss_pred eeCCCCCEEEEEEecC
Q 006979 250 RMDPRGERMAWIEWHH 265 (623)
Q Consensus 250 ~wSPDG~~la~~~~~~ 265 (623)
.|||||++|.|+-.|+
T Consensus 74 vfSpDG~~lSFTYNDh 89 (122)
T PF12566_consen 74 VFSPDGSWLSFTYNDH 89 (122)
T ss_pred EECCCCCEEEEEecch
Confidence 4999999999997554
No 464
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.04 E-value=37 Score=32.56 Aligned_cols=194 Identities=10% Similarity=0.054 Sum_probs=102.7
Q ss_pred ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCc
Q 006979 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 272 (623)
Q Consensus 193 ~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~ 272 (623)
....++.-||++.+..-.+ ..+-+.++-.|.. ++.......-+-....|-|..+++-...|
T Consensus 20 V~avryN~dGnY~ltcGsd---------rtvrLWNp~rg~l--iktYsghG~EVlD~~~s~Dnskf~s~GgD-------- 80 (307)
T KOG0316|consen 20 VRAVRYNVDGNYCLTCGSD---------RTVRLWNPLRGAL--IKTYSGHGHEVLDAALSSDNSKFASCGGD-------- 80 (307)
T ss_pred eEEEEEccCCCEEEEcCCC---------ceEEeecccccce--eeeecCCCceeeeccccccccccccCCCC--------
Confidence 4456678899987654332 3355556655542 22222222122334567788777644323
Q ss_pred eEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccc
Q 006979 273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLW 352 (623)
Q Consensus 273 ~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w 352 (623)
..+++.|++++ ...+.+.+.. ..+..++|..+..+++.... +-.-++|-..-.+-++.++..+..+
T Consensus 81 k~v~vwDV~TG---kv~Rr~rgH~----aqVNtV~fNeesSVv~Sgsf-D~s~r~wDCRS~s~ePiQildea~D------ 146 (307)
T KOG0316|consen 81 KAVQVWDVNTG---KVDRRFRGHL----AQVNTVRFNEESSVVASGSF-DSSVRLWDCRSRSFEPIQILDEAKD------ 146 (307)
T ss_pred ceEEEEEcccC---eeeeeccccc----ceeeEEEecCcceEEEeccc-cceeEEEEcccCCCCccchhhhhcC------
Confidence 34888899988 3555666665 56778889877766554433 2334555333333344444433111
Q ss_pred cccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCC--cceEee--eecCCEEEEEEecCCCCCeEEE
Q 006979 353 VFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF--TDIDNI--TLGNDCLFVEGASGVEPSSVAK 428 (623)
Q Consensus 353 ~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~--~~v~~~--~~~~~~~~~~~~s~~~~~~ly~ 428 (623)
+..+..+ .++.++....+|..+.|-+. .|... ..+ ..+..+ +.+++..+...-+ ..|-+
T Consensus 147 --~V~Si~v------~~heIvaGS~DGtvRtydiR--~G~l~---sDy~g~pit~vs~s~d~nc~La~~l~----stlrL 209 (307)
T KOG0316|consen 147 --GVSSIDV------AEHEIVAGSVDGTVRTYDIR--KGTLS---SDYFGHPITSVSFSKDGNCSLASSLD----STLRL 209 (307)
T ss_pred --ceeEEEe------cccEEEeeccCCcEEEEEee--cceee---hhhcCCcceeEEecCCCCEEEEeecc----ceeee
Confidence 1112222 34566777778887776553 34332 221 123333 5666655443322 34667
Q ss_pred EEcCCCcc
Q 006979 429 VTLDDHKL 436 (623)
Q Consensus 429 ~~l~~~~~ 436 (623)
+|-++|++
T Consensus 210 lDk~tGkl 217 (307)
T KOG0316|consen 210 LDKETGKL 217 (307)
T ss_pred cccchhHH
Confidence 78777764
No 465
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=84.98 E-value=4.1 Score=41.52 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=68.5
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcC---------ceEEEEECCCCCCCCchh
Q 006979 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSR---------GWAFVDVNYGGSTGYGRE 541 (623)
Q Consensus 471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~---------G~~v~~~d~rGs~~~g~~ 541 (623)
.|.+||-.-..|... +. .....|+ +++||.|++-. .|.-.+..++.- -|-|++|-.+|- |-+
T Consensus 132 eGL~iHFlhvk~p~~--k~-~k~v~Pl-Ll~HGwPGsv~--EFykfIPlLT~p~~hg~~~d~~FEVI~PSlPGy---gwS 202 (469)
T KOG2565|consen 132 EGLKIHFLHVKPPQK--KK-KKKVKPL-LLLHGWPGSVR--EFYKFIPLLTDPKRHGNESDYAFEVIAPSLPGY---GWS 202 (469)
T ss_pred cceeEEEEEecCCcc--cc-CCcccce-EEecCCCchHH--HHHhhhhhhcCccccCCccceeEEEeccCCCCc---ccC
Confidence 577888555555432 11 1223455 45899986543 444445555543 488999999984 332
Q ss_pred HHHhhccCCccchHHHHHHHHHHH-HhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEE
Q 006979 542 FRERLLGRWGIVDVNDCCSCATFL-VGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAG 601 (623)
Q Consensus 542 ~~~~~~~~~g~~~~~D~~~~~~~l-~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~ 601 (623)
- .....|... ..+..+++-| ...| -++..|.|+-+|.-++..++ -+|+.+.+.
T Consensus 203 d---~~sk~GFn~-~a~ArvmrkLMlRLg---~nkffiqGgDwGSiI~snlasLyPenV~Gl 257 (469)
T KOG2565|consen 203 D---APSKTGFNA-AATARVMRKLMLRLG---YNKFFIQGGDWGSIIGSNLASLYPENVLGL 257 (469)
T ss_pred c---CCccCCccH-HHHHHHHHHHHHHhC---cceeEeecCchHHHHHHHHHhhcchhhhHh
Confidence 1 112233332 2333344433 4444 47999999999999999998 788866543
No 466
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=84.92 E-value=4.5 Score=41.03 Aligned_cols=134 Identities=13% Similarity=0.095 Sum_probs=74.7
Q ss_pred CCCCCcCCHHHHhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEE
Q 006979 73 GSWKSPLTADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFR 151 (623)
Q Consensus 73 g~w~s~~t~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~ 151 (623)
|.|+-- ..-++....+++.++||| ...+|..-+- +|...||-.+.+ .+..-++-+. |...+-.+.
T Consensus 244 g~W~vd--~~Pf~gH~~SVEDLqWSptE~~vfaScS~---DgsIrIWDiRs~--~~~~~~~~kA-------h~sDVNVIS 309 (440)
T KOG0302|consen 244 GSWKVD--QRPFTGHTKSVEDLQWSPTEDGVFASCSC---DGSIRIWDIRSG--PKKAAVSTKA-------HNSDVNVIS 309 (440)
T ss_pred Cceeec--CccccccccchhhhccCCccCceEEeeec---CceEEEEEecCC--CccceeEeec-------cCCceeeEE
Confidence 888521 223444567889999999 8999988766 488888865543 1222222121 222234455
Q ss_pred EeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 006979 152 IFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (623)
Q Consensus 152 ~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~ 230 (623)
|+.+ .++.+...+|.+-++|+..- +..+++..- .--........|+|....++.+.... ++|.+.|+.-
T Consensus 310 Wnr~~~lLasG~DdGt~~iwDLR~~-~~~~pVA~f-k~Hk~pItsieW~p~e~s~iaasg~D--------~QitiWDlsv 379 (440)
T KOG0302|consen 310 WNRREPLLASGGDDGTLSIWDLRQF-KSGQPVATF-KYHKAPITSIEWHPHEDSVIAASGED--------NQITIWDLSV 379 (440)
T ss_pred ccCCcceeeecCCCceEEEEEhhhc-cCCCcceeE-EeccCCeeEEEeccccCceEEeccCC--------CcEEEEEeec
Confidence 5554 45556666788888888642 011111110 00012245677999777776665432 4566666643
No 467
>PLN02454 triacylglycerol lipase
Probab=84.89 E-value=1.5 Score=45.99 Aligned_cols=38 Identities=18% Similarity=0.119 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh
Q 006979 555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL 592 (623)
Q Consensus 555 ~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~ 592 (623)
.+++.+.++.++++..-.+-+|.++|||+||.+++.++
T Consensus 209 r~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA 246 (414)
T PLN02454 209 RSQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAA 246 (414)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHH
Confidence 46777888888776322223599999999999999887
No 468
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=84.13 E-value=8.4 Score=43.26 Aligned_cols=102 Identities=10% Similarity=0.025 Sum_probs=62.7
Q ss_pred cceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE-cC-CCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCC
Q 006979 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA-LN-GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 271 (623)
Q Consensus 194 ~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~id-l~-~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~ 271 (623)
.-.++||.++.++....+ ++|.+.. .. .+.....+.+--..+-+....||+||.+|+=-. .
T Consensus 209 t~~~~spn~~~~Aa~d~d---------GrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG--------~ 271 (792)
T KOG1963|consen 209 TCVALSPNERYLAAGDSD---------GRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGG--------R 271 (792)
T ss_pred eeEEeccccceEEEeccC---------CcEEEEeccccccccccceEEEecccccceeEEecCCceEeecc--------c
Confidence 346799999877764433 3344443 22 122122444544556677789999999886322 1
Q ss_pred ceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeC
Q 006979 272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR 320 (623)
Q Consensus 272 ~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~ 320 (623)
.+.|.+..++++ .++.++... ..+....||||+.++.+...
T Consensus 272 E~VLv~Wq~~T~----~kqfLPRLg----s~I~~i~vS~ds~~~sl~~~ 312 (792)
T KOG1963|consen 272 EGVLVLWQLETG----KKQFLPRLG----SPILHIVVSPDSDLYSLVLE 312 (792)
T ss_pred ceEEEEEeecCC----CcccccccC----CeeEEEEEcCCCCeEEEEec
Confidence 445666677666 355666554 45678899999996655544
No 469
>KOG4328 consensus WD40 protein [Function unknown]
Probab=84.11 E-value=60 Score=34.17 Aligned_cols=151 Identities=10% Similarity=0.071 Sum_probs=82.1
Q ss_pred EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCC--CCc
Q 006979 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG--QNI 233 (623)
Q Consensus 156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~--g~~ 233 (623)
.++|.+..+ .+-++|+.+++.+-..+.-. ........+.|-..+++.+.... ..+.++|+.. ++
T Consensus 293 ~vl~~~~~G-~f~~iD~R~~~s~~~~~~lh----~kKI~sv~~NP~~p~~laT~s~D--------~T~kIWD~R~l~~K- 358 (498)
T KOG4328|consen 293 SVLFGDNVG-NFNVIDLRTDGSEYENLRLH----KKKITSVALNPVCPWFLATASLD--------QTAKIWDLRQLRGK- 358 (498)
T ss_pred cEEEeeccc-ceEEEEeecCCccchhhhhh----hcccceeecCCCCchheeecccC--------cceeeeehhhhcCC-
Confidence 455554433 56677777652223333332 23667788899888877765533 3355567654 22
Q ss_pred cccee-c--ccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEec---CCCceeeeEEEcCCC-C-CccccCcC
Q 006979 234 QEPKV-L--VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS---ENGDVYKRVCVAGFD-P-TIVESPTE 305 (623)
Q Consensus 234 ~~~~~-l--~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~---~~~~~~~~~~~~~~~-~-~~~~~~~~ 305 (623)
..+ | ......++...|||+|-.|+-...| .+|.++|.. ..-. ....+.... . .| .....
T Consensus 359 --~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D--------~~IRv~dss~~sa~~~--p~~~I~Hn~~t~Rw-lT~fK 425 (498)
T KOG4328|consen 359 --ASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQD--------NEIRVFDSSCISAKDE--PLGTIPHNNRTGRW-LTPFK 425 (498)
T ss_pred --CCcceecccccceeeeeEEcCCCCceEeeccC--------CceEEeecccccccCC--ccceeeccCccccc-ccchh
Confidence 111 2 1222345667799999887766533 347777763 1111 111111111 0 11 34457
Q ss_pred ceeCCCCcEEEEEeCCCCeeeEEEEecCCCe
Q 006979 306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNE 336 (623)
Q Consensus 306 ~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~ 336 (623)
..|.||-.++++.+. -..|-.+|..+++
T Consensus 426 A~W~P~~~li~vg~~---~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 426 AAWDPDYNLIVVGRY---PRPIDVFDGNGGQ 453 (498)
T ss_pred heeCCCccEEEEecc---CcceeEEcCCCCE
Confidence 799998766666554 2247788877766
No 470
>PLN02633 palmitoyl protein thioesterase family protein
Probab=84.03 E-value=7.8 Score=38.94 Aligned_cols=103 Identities=16% Similarity=0.081 Sum_probs=58.0
Q ss_pred CCCCCEEEEecCCCCCcccCcCCHHhHHHHcC-ceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCC
Q 006979 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 570 (623)
Q Consensus 492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~-G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~ 570 (623)
..+.|+|| -||-+.....+......+.+.+. |.-+..+..-.+ . ...|-....+-+..+-+.|.+.+.
T Consensus 23 ~~~~P~Vi-wHG~GD~c~~~g~~~~~~l~~~~~g~~~~~i~ig~~--~--------~~s~~~~~~~Qve~vce~l~~~~~ 91 (314)
T PLN02633 23 SVSVPFIM-LHGIGTQCSDATNANFTQLLTNLSGSPGFCLEIGNG--V--------GDSWLMPLTQQAEIACEKVKQMKE 91 (314)
T ss_pred cCCCCeEE-ecCCCcccCCchHHHHHHHHHhCCCCceEEEEECCC--c--------cccceeCHHHHHHHHHHHHhhchh
Confidence 34567766 69876666666666666666553 566656554221 1 111111111222233333333322
Q ss_pred CCCCceEEEEcChHHHHHHHHh-cCCC--ceeEEEeccc
Q 006979 571 ADEKRLCITGGSAGGYTTLAAL-AFRD--TFKAGASLYG 606 (623)
Q Consensus 571 ~d~~rv~i~G~S~GG~~~~~~~-~~~~--~f~a~v~~~g 606 (623)
. .+-+-++|+|.||.+.=.++ +.++ .++-.|++.|
T Consensus 92 l-~~G~naIGfSQGGlflRa~ierc~~~p~V~nlISlgg 129 (314)
T PLN02633 92 L-SQGYNIVGRSQGNLVARGLIEFCDGGPPVYNYISLAG 129 (314)
T ss_pred h-hCcEEEEEEccchHHHHHHHHHCCCCCCcceEEEecC
Confidence 2 24689999999999998888 6665 4666666644
No 471
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=83.86 E-value=6.9 Score=43.07 Aligned_cols=54 Identities=13% Similarity=0.131 Sum_probs=30.7
Q ss_pred ccCcCceeCCCCc-EEEEEeCC-----CCeeeEEEEecCCCeEEEEeecccccccccccc
Q 006979 301 ESPTEPKWSSKGE-LFFVTDRK-----NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF 354 (623)
Q Consensus 301 ~~~~~~~ws~DG~-l~~~~~~~-----~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~ 354 (623)
..+.+..|+++|. |.+..... .+...+..+.+-+.-...+.....++++..|.-
T Consensus 259 m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg 318 (1189)
T KOG2041|consen 259 MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEG 318 (1189)
T ss_pred cEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcC
Confidence 4567889999999 54443321 122345555554444444544455666777754
No 472
>KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=83.84 E-value=7.8 Score=37.84 Aligned_cols=98 Identities=17% Similarity=0.062 Sum_probs=58.1
Q ss_pred CCEEEEecCCCCCcccCcCCHHhHHHHcC-ceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHH-HHHHHHhCCCCC
Q 006979 495 PPLLVKSHGGPTSEARGILNLSIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCS-CATFLVGSGKAD 572 (623)
Q Consensus 495 ~Pliv~~hGg~~~~~~~~~~~~~~~~a~~-G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~-~~~~l~~~~~~d 572 (623)
.|+|| .||-........+....|++.+. |..|.+.+..-+ ....|.. ...+... +-+.+...+..
T Consensus 24 ~P~ii-~HGigd~c~~~~~~~~~q~l~~~~g~~v~~leig~g--~~~s~l~---------pl~~Qv~~~ce~v~~m~~l- 90 (296)
T KOG2541|consen 24 VPVIV-WHGIGDSCSSLSMANLTQLLEELPGSPVYCLEIGDG--IKDSSLM---------PLWEQVDVACEKVKQMPEL- 90 (296)
T ss_pred CCEEE-EeccCcccccchHHHHHHHHHhCCCCeeEEEEecCC--cchhhhc---------cHHHHHHHHHHHHhcchhc-
Confidence 56665 79986666655666778888775 888888886431 1122221 1223332 33333322222
Q ss_pred CCceEEEEcChHHHHHHHHh-cCC-CceeEEEecc
Q 006979 573 EKRLCITGGSAGGYTTLAAL-AFR-DTFKAGASLY 605 (623)
Q Consensus 573 ~~rv~i~G~S~GG~~~~~~~-~~~-~~f~a~v~~~ 605 (623)
++-+-|+|.|.||.++=+++ ..+ ..++-.|+..
T Consensus 91 sqGynivg~SQGglv~Raliq~cd~ppV~n~ISL~ 125 (296)
T KOG2541|consen 91 SQGYNIVGYSQGGLVARALIQFCDNPPVKNFISLG 125 (296)
T ss_pred cCceEEEEEccccHHHHHHHHhCCCCCcceeEecc
Confidence 57889999999999998888 322 2344445443
No 473
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=83.51 E-value=35 Score=35.11 Aligned_cols=128 Identities=13% Similarity=0.135 Sum_probs=58.2
Q ss_pred EEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCC---CCCCCCeeecceeeCCC---CCEEEEEEeccC-CCCCCcee
Q 006979 150 FRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITP---DYGEPLVSYADGIFDPR---FNRYVTVREDRR-QDALNSTT 221 (623)
Q Consensus 150 ~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~---~~~~~~~~~~d~~~sPd---G~~l~~v~~~~~-~~~~~~~~ 221 (623)
.++.+| .+++ .+..|+|++++.++. ....+.. .......-..+.+++|+ ..+| |+..... ........
T Consensus 7 ~a~~pdG~l~v-~e~~G~i~~~~~~g~--~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~l-Yv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 7 MAFLPDGRLLV-AERSGRIWVVDKDGS--LKTPVADLPEVFADGERGLLGIAFHPDFASNGYL-YVYYTNADEDGGDNDN 82 (331)
T ss_dssp EEEETTSCEEE-EETTTEEEEEETTTE--ECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EE-EEEEEEE-TSSSSEEE
T ss_pred EEEeCCCcEEE-EeCCceEEEEeCCCc--CcceecccccccccccCCcccceeccccCCCCEE-EEEEEcccCCCCCcce
Confidence 444555 4544 445888999984432 1122211 10011223345677774 2233 3322211 11112446
Q ss_pred EEEEEEcCCC--Ccccceecc----c---CCCcccceeeCCCCCEEEEEEecCCC------CCCCceEEEEEEecC
Q 006979 222 EIVAIALNGQ--NIQEPKVLV----S---GSDFYAFPRMDPRGERMAWIEWHHPN------MPWDKAELWVGYISE 282 (623)
Q Consensus 222 ~L~~idl~~g--~~~~~~~l~----~---~~~~~~~p~wSPDG~~la~~~~~~~~------~p~~~~~L~v~d~~~ 282 (623)
.|+++.++.+ .....+.|. . ....-....|.||| +|++..-+..+ .......|..++.++
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG 157 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG 157 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceEEEecccC
Confidence 7888877655 211122232 1 11223457799999 68776644332 111245677777654
No 474
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=83.48 E-value=73 Score=34.71 Aligned_cols=88 Identities=19% Similarity=0.058 Sum_probs=38.6
Q ss_pred EEEEEeC----CCCcEEEEeCCCCCCCce-ecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 006979 156 TVIFSNY----KDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (623)
Q Consensus 156 ~l~f~~~----~~~~l~~~d~~~g~~~~~-~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~ 230 (623)
.++|... .....|.+|.++ ..+ .++.. ..+...+..-++|+.++.. . ..++.+|+.|
T Consensus 115 gl~~~~~~~~~~~~~~~~iD~~G---~Vrw~~~~~----~~~~~~~~~l~nG~ll~~~-~----------~~~~e~D~~G 176 (477)
T PF05935_consen 115 GLYFVNGNDWDSSSYTYLIDNNG---DVRWYLPLD----SGSDNSFKQLPNGNLLIGS-G----------NRLYEIDLLG 176 (477)
T ss_dssp -EEEEEETT--BEEEEEEEETTS----EEEEE-GG----GT--SSEEE-TTS-EEEEE-B----------TEEEEE-TT-
T ss_pred cEEEEeCCCCCCCceEEEECCCc---cEEEEEccC----ccccceeeEcCCCCEEEec-C----------CceEEEcCCC
Confidence 5666654 223478888764 333 22221 1111125567899866543 3 5688899876
Q ss_pred CCcccceecccCC-CcccceeeCCCCCEEEEEE
Q 006979 231 QNIQEPKVLVSGS-DFYAFPRMDPRGERMAWIE 262 (623)
Q Consensus 231 g~~~~~~~l~~~~-~~~~~p~wSPDG~~la~~~ 262 (623)
... ....+..+. .+.-....-|+|..|+...
T Consensus 177 ~v~-~~~~l~~~~~~~HHD~~~l~nGn~L~l~~ 208 (477)
T PF05935_consen 177 KVI-WEYDLPGGYYDFHHDIDELPNGNLLILAS 208 (477)
T ss_dssp -EE-EEEE--TTEE-B-S-EEE-TTS-EEEEEE
T ss_pred CEE-EeeecCCcccccccccEECCCCCEEEEEe
Confidence 531 112333321 2233345789999877665
No 475
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=83.22 E-value=17 Score=35.70 Aligned_cols=70 Identities=9% Similarity=0.001 Sum_probs=38.4
Q ss_pred eeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCC--CCcccceecccCCC-cccceeeCCCCCEEEEEEecCCCCCCCc
Q 006979 196 GIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG--QNIQEPKVLVSGSD-FYAFPRMDPRGERMAWIEWHHPNMPWDK 272 (623)
Q Consensus 196 ~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~--g~~~~~~~l~~~~~-~~~~p~wSPDG~~la~~~~~~~~~p~~~ 272 (623)
+..+.||+.|+.+.+.. |-+-.... ......-++..+.. -....+||||+.-|||... .
T Consensus 3 ~~~~~~Gk~lAi~qd~~----------iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S--------~ 64 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQC----------IEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAES--------T 64 (282)
T ss_pred eeecCCCcEEEEEeccE----------EEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcC--------C
Confidence 45788999888876632 21111111 11000112332221 1234579999999999862 3
Q ss_pred eEEEEEEecCC
Q 006979 273 AELWVGYISEN 283 (623)
Q Consensus 273 ~~L~v~d~~~~ 283 (623)
+.|.++|+.+.
T Consensus 65 G~i~vfdl~g~ 75 (282)
T PF15492_consen 65 GTIRVFDLMGS 75 (282)
T ss_pred CeEEEEecccc
Confidence 44888888754
No 476
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=82.95 E-value=41 Score=34.25 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=43.2
Q ss_pred eeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEE
Q 006979 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIE 262 (623)
Q Consensus 191 ~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~ 262 (623)
.....+.+-|.|.+|+-...| +.+...+.++|-- +.++....+.+-..+.+-||+-+|-.+
T Consensus 194 h~vS~V~f~P~gd~ilS~srD---------~tik~We~~tg~c--v~t~~~h~ewvr~v~v~~DGti~As~s 254 (406)
T KOG0295|consen 194 HGVSSVFFLPLGDHILSCSRD---------NTIKAWECDTGYC--VKTFPGHSEWVRMVRVNQDGTIIASCS 254 (406)
T ss_pred cceeeEEEEecCCeeeecccc---------cceeEEeccccee--EEeccCchHhEEEEEecCCeeEEEecC
Confidence 345677888999877654443 4578888888852 556677777887788899998665443
No 477
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=82.26 E-value=37 Score=34.07 Aligned_cols=129 Identities=12% Similarity=0.022 Sum_probs=64.2
Q ss_pred EEEEEcCCCCcccceecccCCC----c--ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCc-eeeeE-EEcC
Q 006979 223 IVAIALNGQNIQEPKVLVSGSD----F--YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRV-CVAG 294 (623)
Q Consensus 223 L~~idl~~g~~~~~~~l~~~~~----~--~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~-~~~~~-~~~~ 294 (623)
|.++|.-+|+ .+.-....+ . .-...|||||.+|+ .. .+..|.++|+.-.|. -.... +..+
T Consensus 135 Ih~wdaftG~---lraSy~~ydh~de~taAhsL~Fs~DGeqlf-aG--------ykrcirvFdt~RpGr~c~vy~t~~~~ 202 (406)
T KOG2919|consen 135 IHLWDAFTGK---LRASYRAYDHQDEYTAAHSLQFSPDGEQLF-AG--------YKRCIRVFDTSRPGRDCPVYTTVTKG 202 (406)
T ss_pred eeeeeccccc---cccchhhhhhHHhhhhheeEEecCCCCeEe-ec--------ccceEEEeeccCCCCCCcchhhhhcc
Confidence 7888988887 443333221 1 12356999999985 43 234588888854332 01111 1121
Q ss_pred CCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEe-ecccccccccccccCcceeEEeecCCCCEEE
Q 006979 295 FDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIA 372 (623)
Q Consensus 295 ~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~ 372 (623)
.. .....++..+++|-.. ++.+... .....||.- +++..-.+. .....++...|.. +|++|+
T Consensus 203 k~-gq~giisc~a~sP~~~~~~a~gsY-~q~~giy~~--~~~~pl~llggh~gGvThL~~~e------------dGn~lf 266 (406)
T KOG2919|consen 203 KF-GQKGIISCFAFSPMDSKTLAVGSY-GQRVGIYND--DGRRPLQLLGGHGGGVTHLQWCE------------DGNKLF 266 (406)
T ss_pred cc-cccceeeeeeccCCCCcceeeecc-cceeeeEec--CCCCceeeecccCCCeeeEEecc------------CcCeec
Confidence 11 1114556778887543 4433322 122344443 344433333 2233444455554 777777
Q ss_pred EEEEECC
Q 006979 373 CSYRQNG 379 (623)
Q Consensus 373 ~~~~~~g 379 (623)
.-++.+.
T Consensus 267 sGaRk~d 273 (406)
T KOG2919|consen 267 SGARKDD 273 (406)
T ss_pred ccccCCC
Confidence 6554433
No 478
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=82.14 E-value=55 Score=32.38 Aligned_cols=163 Identities=12% Similarity=0.068 Sum_probs=91.8
Q ss_pred CCHHHHhccC----CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEe
Q 006979 79 LTADVVSGAS----KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF 153 (623)
Q Consensus 79 ~t~~~~~~~~----~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s 153 (623)
.|.|.+..-+ .++.-+-|.| ++.+.-+. +...++|.++.. .+....++...+... -+++-.+.|.+.
T Consensus 110 ~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-----dn~i~l~~l~es--s~~vaev~ss~s~e~-~~~ftsg~WspH 181 (370)
T KOG1007|consen 110 STLECVASLDTEAVGKINCVEWEPNSDKLASMD-----DNNIVLWSLDES--SKIVAEVLSSESAEM-RHSFTSGAWSPH 181 (370)
T ss_pred chhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-----cCceEEEEcccC--cchheeecccccccc-cceecccccCCC
Confidence 4667765522 2455677888 77776665 345566766543 232222332212221 234446678776
Q ss_pred CCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 006979 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (623)
Q Consensus 154 ~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~ 233 (623)
.|.--+....++.|+.+|+.+- ...-.+... -..+..+..|.|+-+++++...|. ..+.+.|...-+
T Consensus 182 Hdgnqv~tt~d~tl~~~D~RT~-~~~~sI~dA---Hgq~vrdlDfNpnkq~~lvt~gDd--------gyvriWD~R~tk- 248 (370)
T KOG1007|consen 182 HDGNQVATTSDSTLQFWDLRTM-KKNNSIEDA---HGQRVRDLDFNPNKQHILVTCGDD--------GYVRIWDTRKTK- 248 (370)
T ss_pred CccceEEEeCCCcEEEEEccch-hhhcchhhh---hcceeeeccCCCCceEEEEEcCCC--------ccEEEEeccCCC-
Confidence 5522223335667999999864 122222221 135677888999999998887765 456677775533
Q ss_pred ccceecccCCCcccceeeCCCCCEEEEEE
Q 006979 234 QEPKVLVSGSDFYAFPRMDPRGERMAWIE 262 (623)
Q Consensus 234 ~~~~~l~~~~~~~~~p~wSPDG~~la~~~ 262 (623)
.+++.|.....++-..++.|--..|....
T Consensus 249 ~pv~el~~HsHWvW~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 249 FPVQELPGHSHWVWAVRFNPEHDQLILSG 277 (370)
T ss_pred ccccccCCCceEEEEEEecCccceEEEec
Confidence 11344544455555567777666665544
No 479
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=81.60 E-value=25 Score=36.12 Aligned_cols=163 Identities=8% Similarity=-0.021 Sum_probs=0.0
Q ss_pred eeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc-ccceecccCCCcccceeeCCCCCEEEEEEecCCCCC
Q 006979 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP 269 (623)
Q Consensus 191 ~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~-~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p 269 (623)
....+...+|+|+.|+..... -++++++..+... .........+......++--+.+++... +..+
T Consensus 63 ~a~~~~~~s~~~~llAv~~~~---------K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~--dkag-- 129 (390)
T KOG3914|consen 63 LAPALVLTSDSGRLVAVATSS---------KQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVA--DKAG-- 129 (390)
T ss_pred ccccccccCCCceEEEEEeCC---------CceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEE--eecC--
Q ss_pred CCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeeccccccc
Q 006979 270 WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSR 349 (623)
Q Consensus 270 ~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~ 349 (623)
+...+.+...+.+ ..+.+.|.- -.+.++.|+||++++..+|+ .+.-++-++ +...-.....-+..+|..
T Consensus 130 -D~~~~di~s~~~~----~~~~~lGhv----Sml~dVavS~D~~~IitaDR-DEkIRvs~y-pa~f~IesfclGH~eFVS 198 (390)
T KOG3914|consen 130 -DVYSFDILSADSG----RCEPILGHV----SMLLDVAVSPDDQFIITADR-DEKIRVSRY-PATFVIESFCLGHKEFVS 198 (390)
T ss_pred -Cceeeeeeccccc----Ccchhhhhh----hhhheeeecCCCCEEEEecC-CceEEEEec-CcccchhhhccccHhhee
Q ss_pred ccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCc
Q 006979 350 PLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 392 (623)
Q Consensus 350 ~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~ 392 (623)
---. -.++.++++ .|..+|++.|..+|+
T Consensus 199 ~isl-------------~~~~~LlS~--sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 199 TISL-------------TDNYLLLSG--SGDKTLRLWDITSGK 226 (390)
T ss_pred eeee-------------ccCceeeec--CCCCcEEEEecccCC
No 480
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=81.56 E-value=21 Score=32.90 Aligned_cols=88 Identities=17% Similarity=0.209 Sum_probs=60.3
Q ss_pred CCCCCEEEEEEecCCCCCCC-ceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCC----eee
Q 006979 252 DPRGERMAWIEWHHPNMPWD-KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNG----FWN 326 (623)
Q Consensus 252 SPDG~~la~~~~~~~~~p~~-~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g----~~~ 326 (623)
|-+|++=|.+....++..|. -+.||+.++..+. ...+..+..+ -...+-...|..|..|+++-....| ..+
T Consensus 66 s~~~~~saciegkg~~a~eEgiGkIYIkn~~~~~---~~~L~i~~~~-~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGn 141 (200)
T PF15525_consen 66 SENGKYSACIEGKGPEAEEEGIGKIYIKNLNNNN---WWSLQIDQNE-EKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGN 141 (200)
T ss_pred ccCCceeEEEEcCCCccccccceeEEEEecCCCc---eEEEEecCcc-cccCCceeEEecCCcEEEEEccccceEccCCe
Confidence 67799999998777765564 4789999998773 3434344331 1145567889888775544332234 368
Q ss_pred EEEEecCCCeEEEEeec
Q 006979 327 LHKWIESNNEVLAIYSL 343 (623)
Q Consensus 327 L~~~d~~~~~~~~l~~~ 343 (623)
||.+++.+++...|+..
T Consensus 142 Ly~~nl~tg~~~~ly~~ 158 (200)
T PF15525_consen 142 LYKYNLNTGNLTELYEW 158 (200)
T ss_pred EEEEEccCCceeEeeec
Confidence 99999999999988853
No 481
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=81.54 E-value=71 Score=34.72 Aligned_cols=205 Identities=14% Similarity=0.073 Sum_probs=0.0
Q ss_pred cceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCce
Q 006979 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 273 (623)
Q Consensus 194 ~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~ 273 (623)
+...+||||++++.+-- ...+|-++|+..-.+.-.+-+ +++.+...-.|-|=.+++|++.|+
T Consensus 55 t~ik~s~DGqY~lAtG~--------YKP~ikvydlanLSLKFERhl--Dae~V~feiLsDD~SK~v~L~~DR-------- 116 (703)
T KOG2321|consen 55 TRIKVSPDGQYLLATGT--------YKPQIKVYDLANLSLKFERHL--DAEVVDFEILSDDYSKSVFLQNDR-------- 116 (703)
T ss_pred ceeEecCCCcEEEEecc--------cCCceEEEEcccceeeeeecc--cccceeEEEeccchhhheEeecCc--------
Q ss_pred EEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCe-EEEEeecccccccccc
Q 006979 274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNE-VLAIYSLDAEFSRPLW 352 (623)
Q Consensus 274 ~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~-~~~l~~~~~~~~~~~w 352 (623)
.+++...........++... ..+.--.|+-| ||++... ..||+++++-|. +.++... .+..|
T Consensus 117 ---~IefHak~G~hy~~RIP~~G----RDm~y~~~scD--ly~~gsg----~evYRlNLEqGrfL~P~~~~----~~~lN 179 (703)
T KOG2321|consen 117 ---TIEFHAKYGRHYRTRIPKFG----RDMKYHKPSCD--LYLVGSG----SEVYRLNLEQGRFLNPFETD----SGELN 179 (703)
T ss_pred ---eeeehhhcCeeeeeecCcCC----ccccccCCCcc--EEEeecC----cceEEEEccccccccccccc----cccce
Q ss_pred cccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCcc-eEee-eecCCEEEEEEecCCCCCeEEEEE
Q 006979 353 VFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTD-IDNI-TLGNDCLFVEGASGVEPSSVAKVT 430 (623)
Q Consensus 353 ~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~~-v~~~-~~~~~~~~~~~~s~~~~~~ly~~~ 430 (623)
+.+.+..+=|.........+=.......+++-.++....-....-..... +..+ ..+++.=+.++.+. .++|.+|
T Consensus 180 ~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~---G~v~iyD 256 (703)
T KOG2321|consen 180 VVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTST---GSVLIYD 256 (703)
T ss_pred eeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccC---CcEEEEE
Q ss_pred cCCCcc
Q 006979 431 LDDHKL 436 (623)
Q Consensus 431 l~~~~~ 436 (623)
+...++
T Consensus 257 LRa~~p 262 (703)
T KOG2321|consen 257 LRASKP 262 (703)
T ss_pred cccCCc
No 482
>PLN02408 phospholipase A1
Probab=81.23 E-value=2.2 Score=44.03 Aligned_cols=37 Identities=22% Similarity=0.077 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh
Q 006979 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL 592 (623)
Q Consensus 556 ~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~ 592 (623)
+.+.+.+..++++..-.+.+|.|.|||+||.++..++
T Consensus 182 ~qVl~eI~~ll~~y~~~~~sI~vTGHSLGGALAtLaA 218 (365)
T PLN02408 182 EMVREEIARLLQSYGDEPLSLTITGHSLGAALATLTA 218 (365)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEeccchHHHHHHHHH
Confidence 4566677777665322234799999999999998877
No 483
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=80.95 E-value=2.4 Score=41.08 Aligned_cols=51 Identities=12% Similarity=-0.035 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-c-C----CCceeEEEecccC
Q 006979 555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-A-F----RDTFKAGASLYGV 607 (623)
Q Consensus 555 ~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~-~----~~~f~a~v~~~g~ 607 (623)
..++...++.+.++ -...+|.+.|||+||.++..++ . . +..+.+..-.+|.
T Consensus 111 ~~~~~~~~~~~~~~--~p~~~i~vtGHSLGGaiA~l~a~~l~~~~~~~~i~~~tFg~P~ 167 (229)
T cd00519 111 YNQVLPELKSALKQ--YPDYKIIVTGHSLGGALASLLALDLRLRGPGSDVTVYTFGQPR 167 (229)
T ss_pred HHHHHHHHHHHHhh--CCCceEEEEccCHHHHHHHHHHHHHHhhCCCCceEEEEeCCCC
Confidence 34555555555554 2346899999999999998766 2 1 3446655545544
No 484
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=80.71 E-value=3.1 Score=44.35 Aligned_cols=108 Identities=18% Similarity=0.217 Sum_probs=60.9
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcC-----------C------HHhHHHHcCceEEEEECCCCCCC
Q 006979 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-----------N------LSIQYWTSRGWAFVDVNYGGSTG 537 (623)
Q Consensus 475 i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~-----------~------~~~~~~a~~G~~v~~~d~rGs~~ 537 (623)
...|.+.+.+. ..+.|+|+++.|||+......+ . ....-|.+++ .++-+|.+=++|
T Consensus 87 ~ffy~fe~~nd------p~~rPvi~wlNGGPGcSS~~g~l~elGP~rI~~~~~P~~~~NP~SW~~~a-dLvFiDqPvGTG 159 (498)
T COG2939 87 FFFYTFESPND------PANRPVIFWLNGGPGCSSVTGLLGELGPKRIQSGTSPSYPDNPGSWLDFA-DLVFIDQPVGTG 159 (498)
T ss_pred EEEEEecCCCC------CCCCceEEEecCCCChHhhhhhhhhcCCeeeeCCCCCCCCCCccccccCC-ceEEEecCcccC
Confidence 44455655441 4678999999999964432211 0 1334466665 556678554566
Q ss_pred CchhHHHhhccC-CccchHHHHHHHHHHH----HhCCCCCCCceEEEEcChHHHHHHHHh
Q 006979 538 YGREFRERLLGR-WGIVDVNDCCSCATFL----VGSGKADEKRLCITGGSAGGYTTLAAL 592 (623)
Q Consensus 538 ~g~~~~~~~~~~-~g~~~~~D~~~~~~~l----~~~~~~d~~rv~i~G~S~GG~~~~~~~ 592 (623)
|.++-.+....+ ++ .-+|+....+.+ .+.... ..+..|.|-||||+-.-..+
T Consensus 160 fS~a~~~e~~~d~~~--~~~D~~~~~~~f~~~fp~~~r~-~~~~~L~GESYgg~yip~~A 216 (498)
T COG2939 160 FSRALGDEKKKDFEG--AGKDVYSFLRLFFDKFPHYARL-LSPKFLAGESYGGHYIPVFA 216 (498)
T ss_pred cccccccccccchhc--cchhHHHHHHHHHHHHHHHhhh-cCceeEeeccccchhhHHHH
Confidence 655411111111 22 234555555543 333222 25889999999999877665
No 485
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=80.65 E-value=63 Score=32.06 Aligned_cols=103 Identities=11% Similarity=0.055 Sum_probs=64.0
Q ss_pred eEEEEEEcCCCCcccceecccCCCcccceeeCCCCC--EEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCC
Q 006979 221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE--RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT 298 (623)
Q Consensus 221 ~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~--~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~ 298 (623)
..|-+.|..+-+ ......-.+.+..-+|||=.. .|.-+..+ ..++.++|+..+. -...+.|..
T Consensus 124 htlKVWDtnTlQ---~a~~F~me~~VYshamSp~a~sHcLiA~gtr-------~~~VrLCDi~SGs---~sH~LsGHr-- 188 (397)
T KOG4283|consen 124 HTLKVWDTNTLQ---EAVDFKMEGKVYSHAMSPMAMSHCLIAAGTR-------DVQVRLCDIASGS---FSHTLSGHR-- 188 (397)
T ss_pred ceEEEeecccce---eeEEeecCceeehhhcChhhhcceEEEEecC-------CCcEEEEeccCCc---ceeeecccc--
Confidence 567888887754 333333344444567898654 22223323 3458899999883 455666665
Q ss_pred ccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEe
Q 006979 299 IVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY 341 (623)
Q Consensus 299 ~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~ 341 (623)
..+-.+.|+|... +++.... +|.-+||-+.-.+|-.+.+.
T Consensus 189 --~~vlaV~Wsp~~e~vLatgsa-Dg~irlWDiRrasgcf~~lD 229 (397)
T KOG4283|consen 189 --DGVLAVEWSPSSEWVLATGSA-DGAIRLWDIRRASGCFRVLD 229 (397)
T ss_pred --CceEEEEeccCceeEEEecCC-CceEEEEEeecccceeEEee
Confidence 5677889999988 5554444 67777776655556666554
No 486
>PLN02571 triacylglycerol lipase
Probab=80.20 E-value=2.6 Score=44.19 Aligned_cols=38 Identities=21% Similarity=0.135 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh
Q 006979 555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL 592 (623)
Q Consensus 555 ~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~ 592 (623)
.+++.+.++.++++..-..-+|.|+|||+||.+|+.++
T Consensus 207 r~qvl~eV~~L~~~y~~e~~sI~VTGHSLGGALAtLaA 244 (413)
T PLN02571 207 RDQVLNEVGRLVEKYKDEEISITICGHSLGAALATLNA 244 (413)
T ss_pred HHHHHHHHHHHHHhcCcccccEEEeccchHHHHHHHHH
Confidence 45677777777665221123799999999999998876
No 487
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=80.16 E-value=83 Score=33.13 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=37.5
Q ss_pred ccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeeccc-C-CcceEee--eecCCEEEEE
Q 006979 348 SRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI-P-FTDIDNI--TLGNDCLFVE 416 (623)
Q Consensus 348 ~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~-~-~~~v~~~--~~~~~~~~~~ 416 (623)
..+.|.. ++..+ .+..|+.+...+|.-+||.+...-.+++.|.. + .+.|..+ +.+++++++-
T Consensus 378 ~~~~Wit---sla~i----~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 378 NGNFWIT---SLAVI----PGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred cccccee---eeEec----ccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 3345763 55565 46668888888999999999765445554432 1 2335555 4555544443
No 488
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=80.09 E-value=97 Score=36.87 Aligned_cols=49 Identities=2% Similarity=-0.115 Sum_probs=30.5
Q ss_pred EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEec
Q 006979 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVRED 211 (623)
Q Consensus 156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~ 211 (623)
.+.+. ...|.|.++|+.+. ....+... ..-....+||||++.++.+...
T Consensus 82 ~i~v~-~~~G~iilvd~et~--~~eivg~v----d~GI~aaswS~Dee~l~liT~~ 130 (1265)
T KOG1920|consen 82 SICVI-TALGDIILVDPETL--ELEIVGNV----DNGISAASWSPDEELLALITGR 130 (1265)
T ss_pred eEEEE-ecCCcEEEEccccc--ceeeeeec----cCceEEEeecCCCcEEEEEeCC
Confidence 44443 35677888887765 33333332 2334557799999988888653
No 489
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=78.95 E-value=12 Score=37.38 Aligned_cols=95 Identities=13% Similarity=0.034 Sum_probs=58.8
Q ss_pred CEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEE-EeccCCCCCCceeEEEEEEcCCCCc
Q 006979 155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTV-REDRRQDALNSTTEIVAIALNGQNI 233 (623)
Q Consensus 155 d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v-~~~~~~~~~~~~~~L~~idl~~g~~ 233 (623)
+-++.....-|.|+++|+.++ .-...+-.. +...++..+.|+.-.|+.. +.| ..|-+.++.+..
T Consensus 105 ~p~la~~G~~GvIrVid~~~~-~~~~~~~gh----G~sINeik~~p~~~qlvls~SkD---------~svRlwnI~~~~- 169 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSG-QCSKNYRGH----GGSINEIKFHPDRPQLVLSASKD---------HSVRLWNIQTDV- 169 (385)
T ss_pred CeeEEeecceeEEEEEecchh-hhccceecc----CccchhhhcCCCCCcEEEEecCC---------ceEEEEeccCCe-
Confidence 344445555677999998755 112222221 4557788899987555554 444 346666777765
Q ss_pred ccceecccCC----CcccceeeCCCCCEEEEEEecCC
Q 006979 234 QEPKVLVSGS----DFYAFPRMDPRGERMAWIEWHHP 266 (623)
Q Consensus 234 ~~~~~l~~~~----~~~~~p~wSPDG~~la~~~~~~~ 266 (623)
...+..|. +.+-...||+||.+|+-..+|++
T Consensus 170 --Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhs 204 (385)
T KOG1034|consen 170 --CVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHS 204 (385)
T ss_pred --EEEEecccccccCcEEEEEEcCCCCeeeccCCcce
Confidence 44454443 34556789999999887666664
No 490
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=78.51 E-value=73 Score=31.50 Aligned_cols=79 Identities=14% Similarity=0.237 Sum_probs=43.0
Q ss_pred eeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCC-CceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeE
Q 006979 249 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN-GDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNL 327 (623)
Q Consensus 249 p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L 327 (623)
...+.|||-||.++ |. . |-+-...++ ..+..+..+ ..++. -.-...+||||+.++..++. +|. |
T Consensus 3 ~~~~~~Gk~lAi~q-d~------~--iEiRsa~Ddf~si~~kcqV-pkD~~--PQWRkl~WSpD~tlLa~a~S-~G~--i 67 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQ------C--IEIRSAKDDFSSIIGKCQV-PKDPN--PQWRKLAWSPDCTLLAYAES-TGT--I 67 (282)
T ss_pred eeecCCCcEEEEEe-cc------E--EEEEeccCCchheeEEEec-CCCCC--chheEEEECCCCcEEEEEcC-CCe--E
Confidence 35689999999886 21 1 322222222 222112222 22211 22346789999996666655 554 5
Q ss_pred EEEecCCCeEEEEee
Q 006979 328 HKWIESNNEVLAIYS 342 (623)
Q Consensus 328 ~~~d~~~~~~~~l~~ 342 (623)
..+|+.+.+...+.+
T Consensus 68 ~vfdl~g~~lf~I~p 82 (282)
T PF15492_consen 68 RVFDLMGSELFVIPP 82 (282)
T ss_pred EEEecccceeEEcCc
Confidence 556777766665554
No 491
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=78.46 E-value=9.7 Score=37.83 Aligned_cols=104 Identities=20% Similarity=0.191 Sum_probs=44.2
Q ss_pred CCCCEEEEecCCCCCcccC-cCCHHhHHHHc--CceEEEEECCCCCCCCchhHHHhh-ccCCccchHHHHHH-HHHHHHh
Q 006979 493 EKPPLLVKSHGGPTSEARG-ILNLSIQYWTS--RGWAFVDVNYGGSTGYGREFRERL-LGRWGIVDVNDCCS-CATFLVG 567 (623)
Q Consensus 493 ~~~Pliv~~hGg~~~~~~~-~~~~~~~~~a~--~G~~v~~~d~rGs~~~g~~~~~~~-~~~~g~~~~~D~~~-~~~~l~~ 567 (623)
.+.|+|| .||-......+ .+....+...+ -|..|..++.-. ...+.. ..-++ .+.+.++ +-+.|.+
T Consensus 4 ~~~PvVi-wHGmGD~~~~~~~m~~i~~~i~~~~PG~yV~si~ig~------~~~~D~~~s~f~--~v~~Qv~~vc~~l~~ 74 (279)
T PF02089_consen 4 SPLPVVI-WHGMGDSCCNPSSMGSIKELIEEQHPGTYVHSIEIGN------DPSEDVENSFFG--NVNDQVEQVCEQLAN 74 (279)
T ss_dssp SS--EEE-E--TT--S--TTTHHHHHHHHHHHSTT--EEE--SSS------SHHHHHHHHHHS--HHHHHHHHHHHHHHH
T ss_pred CCCcEEE-EEcCccccCChhHHHHHHHHHHHhCCCceEEEEEECC------CcchhhhhhHHH--HHHHHHHHHHHHHhh
Confidence 4456655 79975443333 33333333322 377777777532 111111 11112 2333332 2334444
Q ss_pred CCCCCCCceEEEEcChHHHHHHHHh-cCCC-ceeEEEeccc
Q 006979 568 SGKADEKRLCITGGSAGGYTTLAAL-AFRD-TFKAGASLYG 606 (623)
Q Consensus 568 ~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~-~f~a~v~~~g 606 (623)
.+.. .+-+-++|+|.||.+.=.++ +.++ .++-.|++.|
T Consensus 75 ~p~L-~~G~~~IGfSQGgl~lRa~vq~c~~~~V~nlISlgg 114 (279)
T PF02089_consen 75 DPEL-ANGFNAIGFSQGGLFLRAYVQRCNDPPVHNLISLGG 114 (279)
T ss_dssp -GGG-TT-EEEEEETCHHHHHHHHHHH-TSS-EEEEEEES-
T ss_pred Chhh-hcceeeeeeccccHHHHHHHHHCCCCCceeEEEecC
Confidence 4333 25799999999999998888 5543 4677776644
No 492
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=78.33 E-value=57 Score=32.54 Aligned_cols=108 Identities=12% Similarity=0.041 Sum_probs=67.6
Q ss_pred CCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeE--EEEEEeCCCCceeecccC
Q 006979 322 NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS--YLGILDDFGHSLSLLDIP 399 (623)
Q Consensus 322 ~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~--~L~~~d~~~~~~~~lt~~ 399 (623)
+.+.++..+|.+.++.+.|..+.... .-.|.-..+.+..-| -++.|+++. .+|.. .||.+|..+|+.++|...
T Consensus 75 NKYSHVH~yd~e~~~VrLLWkesih~-~~~WaGEVSdIlYdP---~~D~LLlAR-~DGh~nLGvy~ldr~~g~~~~L~~~ 149 (339)
T PF09910_consen 75 NKYSHVHEYDTENDSVRLLWKESIHD-KTKWAGEVSDILYDP---YEDRLLLAR-ADGHANLGVYSLDRRTGKAEKLSSN 149 (339)
T ss_pred eccceEEEEEcCCCeEEEEEecccCC-ccccccchhheeeCC---CcCEEEEEe-cCCcceeeeEEEcccCCceeeccCC
Confidence 45789999999999999998764433 246766666555543 455666654 56654 478888889999988754
Q ss_pred CcceEeeeecCCEEEEEEe-cCCCCCeEEEEEcCCCcc
Q 006979 400 FTDIDNITLGNDCLFVEGA-SGVEPSSVAKVTLDDHKL 436 (623)
Q Consensus 400 ~~~v~~~~~~~~~~~~~~~-s~~~~~~ly~~~l~~~~~ 436 (623)
... ...- -.+..+|... -...-+.|..+|+.+++.
T Consensus 150 ps~-KG~~-~~D~a~F~i~~~~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 150 PSL-KGTL-VHDYACFGINNFHKGVSGIHCLDLISGKW 185 (339)
T ss_pred CCc-CceE-eeeeEEEeccccccCCceEEEEEccCCeE
Confidence 321 1111 1122333332 223446789999988874
No 493
>PLN02802 triacylglycerol lipase
Probab=77.81 E-value=3.3 Score=44.38 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh
Q 006979 555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL 592 (623)
Q Consensus 555 ~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~ 592 (623)
.+++.+.++.++++..-..-+|.|.|||+||.++..++
T Consensus 311 reqVl~eV~~Ll~~Y~~e~~sI~VTGHSLGGALAtLaA 348 (509)
T PLN02802 311 SESVVGEVRRLMEKYKGEELSITVTGHSLGAALALLVA 348 (509)
T ss_pred HHHHHHHHHHHHHhCCCCcceEEEeccchHHHHHHHHH
Confidence 45677777777765322224899999999999998776
No 494
>PLN02324 triacylglycerol lipase
Probab=77.78 E-value=3.4 Score=43.31 Aligned_cols=38 Identities=18% Similarity=0.144 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh
Q 006979 555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL 592 (623)
Q Consensus 555 ~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~ 592 (623)
.+.+.+.+..|+++..-..-+|.|.|||+||.+++.++
T Consensus 196 reqVl~eV~~L~~~Yp~e~~sItvTGHSLGGALAtLaA 233 (415)
T PLN02324 196 QEQVQGELKRLLELYKNEEISITFTGHSLGAVMSVLSA 233 (415)
T ss_pred HHHHHHHHHHHHHHCCCCCceEEEecCcHHHHHHHHHH
Confidence 34566777777775321124899999999999998876
No 495
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=77.43 E-value=8.5 Score=35.92 Aligned_cols=80 Identities=13% Similarity=-0.029 Sum_probs=44.8
Q ss_pred cCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHH-HHHHHHhCCCCCCCceEEEEcChHHHHHHH
Q 006979 512 ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCS-CATFLVGSGKADEKRLCITGGSAGGYTTLA 590 (623)
Q Consensus 512 ~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~-~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~ 590 (623)
.|......+.. .+.|+.++.+|.+.... .....+++.. .++.+.+. ....++.++|||+||.++..
T Consensus 14 ~~~~~~~~l~~-~~~v~~~~~~g~~~~~~----------~~~~~~~~~~~~~~~l~~~--~~~~~~~l~g~s~Gg~~a~~ 80 (212)
T smart00824 14 EYARLAAALRG-RRDVSALPLPGFGPGEP----------LPASADALVEAQAEAVLRA--AGGRPFVLVGHSSGGLLAHA 80 (212)
T ss_pred HHHHHHHhcCC-CccEEEecCCCCCCCCC----------CCCCHHHHHHHHHHHHHHh--cCCCCeEEEEECHHHHHHHH
Confidence 34455555544 58899999988532111 1112333332 22333322 22457899999999999977
Q ss_pred Hh-c---CCCceeEEEec
Q 006979 591 AL-A---FRDTFKAGASL 604 (623)
Q Consensus 591 ~~-~---~~~~f~a~v~~ 604 (623)
++ . ++..+...+..
T Consensus 81 ~a~~l~~~~~~~~~l~~~ 98 (212)
T smart00824 81 VAARLEARGIPPAAVVLL 98 (212)
T ss_pred HHHHHHhCCCCCcEEEEE
Confidence 76 3 34445555433
No 496
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=77.21 E-value=81 Score=31.33 Aligned_cols=147 Identities=9% Similarity=-0.014 Sum_probs=78.0
Q ss_pred CceEEEeCC--EEEEEeCCCCcEEEEeCCCCC--CCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeE
Q 006979 147 GGAFRIFGD--TVIFSNYKDQRLYKHSIDSKD--SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE 222 (623)
Q Consensus 147 ~~~~~~s~d--~l~f~~~~~~~l~~~d~~~g~--~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~ 222 (623)
..+|.|..- .++-+...|..--++|+.+|- ...+||-.. ..-+.|.+|+-+|+.+++..... +.
T Consensus 153 lTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAH----DKEV~DIaf~~~s~~~FASvgaD--------GS 220 (364)
T KOG0290|consen 153 LTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAH----DKEVYDIAFLKGSRDVFASVGAD--------GS 220 (364)
T ss_pred ccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEec----CcceeEEEeccCccceEEEecCC--------Cc
Confidence 456666421 344444455555555665530 123444432 23467899999888877655422 56
Q ss_pred EEEEEcCCCCcccceecccCCC---cccceeeCCC-CCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCC
Q 006979 223 IVAIALNGQNIQEPKVLVSGSD---FYAFPRMDPR-GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT 298 (623)
Q Consensus 223 L~~idl~~g~~~~~~~l~~~~~---~~~~p~wSPD-G~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~ 298 (623)
+.++|+..-+- -+.+-+++. -.-..+|++. -+++|-... +..++.++|+.-... ....+.+..
T Consensus 221 vRmFDLR~leH--STIIYE~p~~~~pLlRLswnkqDpnymATf~~-------dS~~V~iLDiR~P~t--pva~L~~H~-- 287 (364)
T KOG0290|consen 221 VRMFDLRSLEH--STIIYEDPSPSTPLLRLSWNKQDPNYMATFAM-------DSNKVVILDIRVPCT--PVARLRNHQ-- 287 (364)
T ss_pred EEEEEeccccc--ceEEecCCCCCCcceeeccCcCCchHHhhhhc-------CCceEEEEEecCCCc--ceehhhcCc--
Confidence 77888876441 122333322 1112234442 233332221 345688888765532 222344444
Q ss_pred ccccCcCceeCCCCc-EEEEEeC
Q 006979 299 IVESPTEPKWSSKGE-LFFVTDR 320 (623)
Q Consensus 299 ~~~~~~~~~ws~DG~-l~~~~~~ 320 (623)
..+...+|.|-.. .++.+.+
T Consensus 288 --a~VNgIaWaPhS~~hictaGD 308 (364)
T KOG0290|consen 288 --ASVNGIAWAPHSSSHICTAGD 308 (364)
T ss_pred --ccccceEecCCCCceeeecCC
Confidence 6788999999877 6665543
No 497
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=76.98 E-value=91 Score=31.85 Aligned_cols=159 Identities=9% Similarity=0.058 Sum_probs=86.8
Q ss_pred eEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 006979 149 AFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (623)
Q Consensus 149 ~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~id 227 (623)
+.++.+. .-+.+...|..+-++|+++| .....||.. -....+..+|+..-+++...++ .++--+|
T Consensus 156 ~vavdP~n~wf~tgs~DrtikIwDlatg-~LkltltGh----i~~vr~vavS~rHpYlFs~ged---------k~VKCwD 221 (460)
T KOG0285|consen 156 SVAVDPGNEWFATGSADRTIKIWDLATG-QLKLTLTGH----IETVRGVAVSKRHPYLFSAGED---------KQVKCWD 221 (460)
T ss_pred EEeeCCCceeEEecCCCceeEEEEcccC-eEEEeecch----hheeeeeeecccCceEEEecCC---------CeeEEEe
Confidence 4555554 44455556677899999988 222233321 2345578899988888776554 4577788
Q ss_pred cCCCCcccceecccCC-CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCc
Q 006979 228 LNGQNIQEPKVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 306 (623)
Q Consensus 228 l~~g~~~~~~~l~~~~-~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (623)
+...+ +.+--.|. .-+......|.-+.|+ .... .+.+.+.|+.+.. ...++.|.. ..+.++
T Consensus 222 Le~nk---vIR~YhGHlS~V~~L~lhPTldvl~-t~gr-------Dst~RvWDiRtr~---~V~~l~GH~----~~V~~V 283 (460)
T KOG0285|consen 222 LEYNK---VIRHYHGHLSGVYCLDLHPTLDVLV-TGGR-------DSTIRVWDIRTRA---SVHVLSGHT----NPVASV 283 (460)
T ss_pred chhhh---hHHHhccccceeEEEeccccceeEE-ecCC-------cceEEEeeecccc---eEEEecCCC----CcceeE
Confidence 88765 22212221 1122345666655444 3322 2336666777663 455666655 345555
Q ss_pred eeCC-CCcEEEEEeCCCCeeeEEEEecCCCe-EEEEeec
Q 006979 307 KWSS-KGELFFVTDRKNGFWNLHKWIESNNE-VLAIYSL 343 (623)
Q Consensus 307 ~ws~-DG~l~~~~~~~~g~~~L~~~d~~~~~-~~~l~~~ 343 (623)
...| |++++-.+.+ +.-+| +|+..|+ ...++..
T Consensus 284 ~~~~~dpqvit~S~D--~tvrl--WDl~agkt~~tlt~h 318 (460)
T KOG0285|consen 284 MCQPTDPQVITGSHD--STVRL--WDLRAGKTMITLTHH 318 (460)
T ss_pred EeecCCCceEEecCC--ceEEE--eeeccCceeEeeecc
Confidence 5544 5656654443 44344 4555554 3445543
No 498
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=76.60 E-value=72 Score=31.83 Aligned_cols=80 Identities=9% Similarity=0.129 Sum_probs=48.1
Q ss_pred CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCC
Q 006979 244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNG 323 (623)
Q Consensus 244 ~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g 323 (623)
+-.....|||.+..|+..+||.. |.++++.... .+..+.- . ..+..-.|.++.+++. ..- +|
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgs--------lrlYdv~~~~---l~~~~~~-~----~plL~c~F~d~~~~~~-G~~-dg 75 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGS--------LRLYDVPANS---LKLKFKH-G----APLLDCAFADESTIVT-GGL-DG 75 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCc--------EEEEeccchh---hhhheec-C----CceeeeeccCCceEEE-ecc-Cc
Confidence 45667789999999999998864 7777776552 1211211 1 2234556666554443 333 23
Q ss_pred eeeEEEEecCCCeEEEEeec
Q 006979 324 FWNLHKWIESNNEVLAIYSL 343 (623)
Q Consensus 324 ~~~L~~~d~~~~~~~~l~~~ 343 (623)
+|-++|+.+++...+-..
T Consensus 76 --~vr~~Dln~~~~~~igth 93 (323)
T KOG1036|consen 76 --QVRRYDLNTGNEDQIGTH 93 (323)
T ss_pred --eEEEEEecCCcceeeccC
Confidence 566778888776666543
No 499
>PLN02153 epithiospecifier protein
Probab=76.25 E-value=98 Score=31.85 Aligned_cols=201 Identities=6% Similarity=0.059 Sum_probs=0.0
Q ss_pred eEEEEEEcCCCCcccceecccCCCc-ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcC-----
Q 006979 221 TEIVAIALNGQNIQEPKVLVSGSDF-YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG----- 294 (623)
Q Consensus 221 ~~L~~idl~~g~~~~~~~l~~~~~~-~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~----- 294 (623)
++++++|+.+.++..+..+...... .......--+.+|+...-..... ...+++++|..+. ....+..
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~--~~~~v~~yd~~t~----~W~~~~~~~~~~ 123 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKR--EFSDFYSYDTVKN----EWTFLTKLDEEG 123 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCC--ccCcEEEEECCCC----EEEEeccCCCCC
Q ss_pred -CCCCccccCcCceeCCCCcEEEEEeCCCC--------eeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeec
Q 006979 295 -FDPTIVESPTEPKWSSKGELFFVTDRKNG--------FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSH 365 (623)
Q Consensus 295 -~~~~~~~~~~~~~ws~DG~l~~~~~~~~g--------~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s 365 (623)
.. .........-++++|+..-...+ ...++.+|+.+.+++.+... ..+.-.........+
T Consensus 124 ~p~----~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~----~~~~~~r~~~~~~~~--- 192 (341)
T PLN02153 124 GPE----ARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDP----GENFEKRGGAGFAVV--- 192 (341)
T ss_pred CCC----CceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCC----CCCCCCCCcceEEEE---
Q ss_pred CCCCEEEEEEEECC----------eEEEEEEeCCCCceeeccc----CCcceEee-eecCCEEEEEEe-----------c
Q 006979 366 GEKNLIACSYRQNG----------RSYLGILDDFGHSLSLLDI----PFTDIDNI-TLGNDCLFVEGA-----------S 419 (623)
Q Consensus 366 ~~~~~l~~~~~~~g----------~~~L~~~d~~~~~~~~lt~----~~~~v~~~-~~~~~~~~~~~~-----------s 419 (623)
+++.+++-..... ...++++|+.+.+++.+.. +......- ..-++++|+.+. .
T Consensus 193 -~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 271 (341)
T PLN02153 193 -QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGP 271 (341)
T ss_pred -CCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCcccccccc
Q ss_pred CCCCCeEEEEEcCCCcceee
Q 006979 420 GVEPSSVAKVTLDDHKLKAV 439 (623)
Q Consensus 420 ~~~~~~ly~~~l~~~~~~~l 439 (623)
......+|.+|+++.+.+.+
T Consensus 272 ~~~~n~v~~~d~~~~~W~~~ 291 (341)
T PLN02153 272 GTLSNEGYALDTETLVWEKL 291 (341)
T ss_pred ccccccEEEEEcCccEEEec
No 500
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=76.12 E-value=2.8 Score=45.81 Aligned_cols=72 Identities=14% Similarity=0.126 Sum_probs=44.3
Q ss_pred CHHhHHHHcCceEEEEECCCCCCCCchhHHHhhcc-CCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh
Q 006979 514 NLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLG-RWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL 592 (623)
Q Consensus 514 ~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~-~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~ 592 (623)
....+.|++.||. -.|.+|. .-+|+..... +-...-+..+...|+.+.+.. ..++|.|+||||||.+++..+
T Consensus 159 ~kLIe~L~~iGY~--~~nL~gA---PYDWRls~~~le~rd~YF~rLK~lIE~ay~~n--ggkKVVLV~HSMGglv~lyFL 231 (642)
T PLN02517 159 AVLIANLARIGYE--EKNMYMA---AYDWRLSFQNTEVRDQTLSRLKSNIELMVATN--GGKKVVVVPHSMGVLYFLHFM 231 (642)
T ss_pred HHHHHHHHHcCCC--CCceeec---ccccccCccchhhhhHHHHHHHHHHHHHHHHc--CCCeEEEEEeCCchHHHHHHH
Confidence 5688999999997 4566552 2223322100 000112345666676665441 147999999999999999876
Done!