Citrus Sinensis ID: 006980


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620---
MQTRYMERSNSKRGLDSSSAEEGQPDRKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPAKLTGRSSPKRIEGPDGRNLQLHFRTRLSLPLFTGGKVEGEQGTAIHIVLIDANTGHVVTTGPESLVKLDVVVLEGDFNNEDDDNWTQEEFVSHVVKEREGKRPLLSGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAKTDAFTVKDHRGELYKKHYPPALNDEVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCVLSGKLYVYYPDDPRNVGVVFNNIYEFCGLIADGQYHSADSLSESQKVHVDTLVKKAYDNWMHVIEYDGKSLLGFTQNKSVDAPPTDFQTGPPNYTNPFSQQLALPTLSVPVPPEQPSMDSGYNDGIPSRFSLQSQNVNINSQFDGTSFPQQNPLVSVPHEAHIPRSENVLALGPPQSSSLVSQTIGTSNPAPYRGIEDFFSEEEIRMRSHEMLENEDMQQHLLRIFNMGGQGHPSFNVAEDAYPYSSPFMANPSPNYSFDDDSSRSSGKAVVGWLKLKAALRWGIFIRKKAAERRAQLVELDDS
ccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEcccccccccccccEEccccccEEEEEEEcccccEEccccccccEEEEEEEcccccccccccccHHHHHHccccccccccccccccEEEEEcccEEEccccEEEccccccccccEEEEEEEEccccccccEEEcccccEEEEEcccccccccccccccccccEEcccccccHHHHHHHHcccccHHHHHHHHHHcHHHHHHHHcccccHHHHHHHHHHcccccccccEEEEEEcccccEEEEEccccEEEEEEcccEEEccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEHHHHHHHHHEEHHHHHHHcccccccc
ccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEcccccccccccEEEEcccccEEEEEEEccccEEEcccccccEEEEEEEEEccccccccccccHHHHHHccEccccccccEEEEEEEEEEcccEEEEcEEEEEcccccccccEEEEEEEEEccccccEEEEEEEcccEEEEcccccccccccccccccHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHcccccEEEEEEEcccccEEEEEccEEEEEEEEEccEEEcHHHccHHHHHHHHHHHHHHHHHHHHHEEcccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccHHHHccccHHHHccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
mqtrymersnskrgldsssaeegqpdrkrpALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKlgpakltgrsspkriegpdgrnlqlhfrtrlslplftggkvegeqgTAIHIVLIdantghvvttgpesLVKLDVVVLEgdfnnedddnwtqeEFVSHVVKeregkrpllsgdlQVTLKegvgtlgdltftdnsswirsRKFRLGLKVASGYCEgirireaktdaftvkdhrgelykkhyppalndEVWRLEkigkdgsfhkrlnkagifTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKtcvlsgklyvyypddprnvgvVFNNIYEFCGliadgqyhsadslsesqKVHVDTLVKKAYDNWMHVIEYDGKsllgftqnksvdapptdfqtgppnytnpfsqqlalptlsvpvppeqpsmdsgyndgipsrfslqsqnvninsqfdgtsfpqqnplvsvpheahiprsenvlalgppqssslvsqtigtsnpapyrgiedfFSEEEIRMRSHEMLENEDMQQHLLRIFNmggqghpsfnvaedaypysspfmanpspnysfdddssrssgkAVVGWLKLKAALRWGIFIRKKAAERRAQLVELDDS
mqtrymersnskrgldsssaeegqpdrkrPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALaklgpakltgrsspkriegpdgrnlqlhFRTRLSLPLFTGGKVEGEQGTAIHIVLIDANTGHVVTTGPESLVKLDVVVLEGDfnnedddnwtqEEFVSHvvkeregkrpllsgdlqvtlkegvgtlgdltftdnsswirsrkfrlglkvasgycegirireaktdaftvkdhrgelykkhyppalndevWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNIlgsgmsnkmWDVLVDHAKTCVLSGKLYVYYPDDPRNVGVVFNNIYEFCGLIADGQYHSADSLSESQKVHVDTLVKKAYDNWMHVIEYDGKSLLGFTQNKSVDAPPTDFQTGPPNYTNPFSQQLALPTLSVPVPPEQPSMDSGYNDGIPSRFSLQSQNVNINSQFDGTSFPQQNPLVSVPHEAHIPRSENVLALGPPQSSSLVSQTIGTSNPAPYRGIEDFFSEEEIRMRSHEMLENEDMQQHLLRIFNMGGQGHPSFNVAEDAYPYSSPFMANPSPNYSFDDDSSRSSGKAVVGWLKLKAALRWGIFIRKKAAERRAQLVELDDS
MQTRYMERSNSKRGLDSSSAEEGQPDRKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPAKLTGRSSPKRIEGPDGRNLQLHFRTRLSLPLFTGGKVEGEQGTAIHIVLIDANTGHVVTTGPESLVKLDVVVLEGDFNNEDDDNWTQEEFVSHVVKEREGKRPLLSGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAKTDAFTVKDHRGELYKKHYPPALNDEVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCVLSGKLYVYYPDDPRNVGVVFNNIYEFCGLIADGQYHSADSLSESQKVHVDTLVKKAYDNWMHVIEYDGKSLLGFTQNKSVDAPPTDFQTGPPNYTNPFSQQLALPTLSVPVPPEQPSMDSGYNDGIPSRFSLQSQNVNINSQFDGTSFPQQNPLVSVPHEAHIPRSENVLALGPPQSSSLVSQTIGTSNPAPYRGIEDFFSEEEIRMRSHEMLENEDMQQHLLRIFNMGGQGHPSFNVAEDAYPYSSPFMANPSPNYSFDDDSSRSSGKAVVGWLKLKAALRWGIFIRKKAAERRAQLVELDDS
********************************ASVIVEALKVDSLQKLCSSLEPILRRVVSEEV****************************LQLHFRTRLSLPLFTGGKVEGEQGTAIHIVLIDANTGHVVTTGPESLVKLDVVVLEGDFNNEDDDNWTQEEFVSHVVKE****RPLLSGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAKTDAFTVKDHRGELYKKHYPPALNDEVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCVLSGKLYVYYPDDPRNVGVVFNNIYEFCGLIADGQYHSADSLSESQKVHVDTLVKKAYDNWMHVIEYDGKSLLGFT**************************************************************************************************************************************************LLRIFNMG****************************************AVVGWLKLKAALRWGIFIRKKA*************
**********************************VIVEALKVDS*******************VERAL**************************LHFRTRLSLPLFTGGKVEGEQGTAIHIVLIDANTGHVVTTGPESLVKLDVVVLEGDFNNEDDDNWTQEEFVSHVVK*****RPLLSGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAKTDAFTVKDHRGELYKKHYPPALNDEVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCVLSGKLYVYYPDDPRNVGVVFNNIYEFCGLIADGQYH**************TLVKKAYDNWMHVIEYDGKSLL************************************************************************************************************************************************DMQQHLL********************PY***************************GWLKLKAALRWGIFIRKKAAERRAQLV*****
*****************************PALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPAKLTGRSSPKRIEGPDGRNLQLHFRTRLSLPLFTGGKVEGEQGTAIHIVLIDANTGHVVTTGPESLVKLDVVVLEGDFNNEDDDNWTQEEFVSHVVKEREGKRPLLSGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAKTDAFTVKDHRGELYKKHYPPALNDEVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCVLSGKLYVYYPDDPRNVGVVFNNIYEFCGLIADGQYHSADSLSESQKVHVDTLVKKAYDNWMHVIEYDGKSLLGFTQNKSVDAPPTDFQTGPPNYTNPFSQQLALPTLSVPVPPEQPSMDSGYNDGIPSRFSLQSQNVNINSQFDGTSFPQQNPLVSVPHEAHIPRSENVLALG*************TSNPAPYRGIEDFFSEEEIRMRSHEMLENEDMQQHLLRIFNMGGQGHPSFNVAEDAYPYSSPFMANPSPNY*************VVGWLKLKAALRWGIFIRKKAAERRAQLVELDDS
***************************KRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPAKLTG*SSPKRIEGPDGRNLQLHFRTRLSLPLFTGGKVEGEQGTAIHIVLIDANTGHVVTTGPESLVKLDVVVLEGDFNNEDDDNWTQEEFVSHVVKEREGKRPLLSGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAKTDAFTVKDHRGELYKKHYPPALNDEVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCVLSGKLYVYYPDDPRNVGVVFNNIYEFCGLIADGQYHSADSLSESQKVHVDTLVKKAYDNWMHVIEYDGKSLLGFTQNK********************SQQLALPTLSVPVPPEQPSMDSGYNDGIPSRFSLQSQNVNINSQFDGTSFPQQNPLVSVPHEAHIPRSENVLALGPPQSSSLVSQTIGTSNPAPYRGIEDFFSEEEIRMRSHEMLENEDMQQHLLRIFNMGGQGHPSFNVAEDAYPYSSPFMANPSPNYSFDDDSSRSSGKAVVGWLKLKAALRWGIFIRKKAAERRAQLV*****
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MQTRYMERSNSKRGLDSSSAEEGQPDRKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPAKLTGRSSPKRIEGPDGRNLQLHFRTRLSLPLFTGGKVEGEQGTAIHIVLIDANTGHVVTTGPESLVKLDVVVLEGDFNNEDDDNWTQEEFVSHVVKEREGKRPLLSGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAKTDAFTVKDHRGELYKKHYPPALNDEVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCVLSGKLYVYYPDDPRNVGVVFNNIYEFCGLIADGQYHSADSLSESQKVHVDTLVKKAYDNWMHVIEYDGKSLLGFTQNKSVDAPPTDFQTGPPNYTNPFSQQLALPTLSVPVPPEQPSMDSGYNDGIPSRFSLQSQNVNINSQFDGTSFPQQNPLVSVPHEAHIPRSENVLALGPPQSSSLVSQTIGTSNPAPYRGIEDFFSEEEIRMRSHEMLENEDMQQHLLRIFNMGGQGHPSFNVAEDAYPYSSPFMANPSPNYSFDDDSSRSSGKAVVGWLKLKAALRWGIFIRKKAAERRAQLVELDDS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query623
359495503 759 PREDICTED: uncharacterized protein LOC10 0.993 0.815 0.800 0.0
302144195636 unnamed protein product [Vitis vinifera] 0.990 0.970 0.801 0.0
147785125637 hypothetical protein VITISV_001611 [Viti 0.993 0.971 0.799 0.0
224114057637 predicted protein [Populus trichocarpa] 0.996 0.974 0.765 0.0
224147096599 predicted protein [Populus trichocarpa] 0.945 0.983 0.785 0.0
357475877629 Calmodulin-binding protein [Medicago tru 0.993 0.984 0.737 0.0
356521307623 PREDICTED: uncharacterized protein LOC10 0.982 0.982 0.773 0.0
356555022635 PREDICTED: uncharacterized protein LOC10 0.995 0.976 0.740 0.0
356527925624 PREDICTED: uncharacterized protein LOC10 0.982 0.980 0.760 0.0
224114061625 predicted protein [Populus trichocarpa] 0.967 0.964 0.742 0.0
>gi|359495503|ref|XP_002273993.2| PREDICTED: uncharacterized protein LOC100256775 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1030 bits (2663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/633 (80%), Positives = 554/633 (87%), Gaps = 14/633 (2%)

Query: 1   MQTRYMERSNS----KRGLDSSSAEEGQPDRKRPALASVIVEALKVDSLQKLCSSLEPIL 56
           MQTRYMERSNS    KR LD SS EEGQ DRKRPALASVIVEALKVDSLQKLCSSLEPIL
Sbjct: 129 MQTRYMERSNSLAREKRALDPSSTEEGQSDRKRPALASVIVEALKVDSLQKLCSSLEPIL 188

Query: 57  RRVVSEEVERALAKLGPAKLTGRSSPKRIEGPDGRNLQLHFRTRLSLPLFTGGKVEGEQG 116
           RRVVSEEVERALAKLGPAKLTGRSSPKRIEGPDGRNLQL FR+RLSLPLFTGGKVEGEQG
Sbjct: 189 RRVVSEEVERALAKLGPAKLTGRSSPKRIEGPDGRNLQLQFRSRLSLPLFTGGKVEGEQG 248

Query: 117 TAIHIVLIDANTGHVVTTGPESLVKLDVVVLEGDFNNEDDDNWTQEEFVSHVVKEREGKR 176
           T IHIVL+DA+TGHVVT+GPES VKLDVVVLEGDFNNEDDD W QEEF SHVVKEREGKR
Sbjct: 249 TTIHIVLLDASTGHVVTSGPESSVKLDVVVLEGDFNNEDDDGWNQEEFESHVVKEREGKR 308

Query: 177 PLLSGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAKTDAFT 236
           PLL+GDLQVTLKEGVGTLG+LTFTDNSSWIRSRKFRLGLKVASGYCEG+RIREAKTDAFT
Sbjct: 309 PLLTGDLQVTLKEGVGTLGELTFTDNSSWIRSRKFRLGLKVASGYCEGMRIREAKTDAFT 368

Query: 237 VKDHRGELYKKHYPPALNDEVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLR 296
           VKDHRGELYKKHYPPALNDEVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLR
Sbjct: 369 VKDHRGELYKKHYPPALNDEVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLR 428

Query: 297 NILGSGMSNKMWDVLVDHAKTCVLSGKLYVYYPDDPRNVGVVFNNIYEFCGLIADGQYHS 356
           NILGSGMSNKMWDVLV+HAKTCVLSGKLYVYYPDD R+VGVVFNNIYE  GLIA GQYHS
Sbjct: 429 NILGSGMSNKMWDVLVEHAKTCVLSGKLYVYYPDDVRSVGVVFNNIYELSGLIAGGQYHS 488

Query: 357 ADSLSESQKVHVDTLVKKAYDNWMHVIEYDGKSLLGFTQNKSVDAPPTDFQTGPPNYTNP 416
           ADSL+++QKV VDTLVKKAYDNW+ V+EYDGKSLL F Q+KS  +  T+   GP +Y N 
Sbjct: 489 ADSLTDNQKVFVDTLVKKAYDNWISVVEYDGKSLLNFNQSKSSGSSQTEVAMGPQDYPNS 548

Query: 417 FSQQLALPTLSVPVPPEQPSMD-----SGYNDGIPSRFSLQSQNVNINS--QFDGTSFPQ 469
           F  QL LP+L V VPP+QPS+       GYND +P+R+ +QSQNVN+N+  QFDGTSFP 
Sbjct: 549 FDHQLTLPSLPVSVPPQQPSVGPSITVGGYNDNMPTRYPIQSQNVNLNAPMQFDGTSFPL 608

Query: 470 QNPLVSVPHEAHIPRSENVLALGPPQSSSLVSQTIGTSNPAPYRGIEDFFSEEEIRMRSH 529
           QN L+  PH+  +P +E++LALGPP +++   Q++GTSN   YR ++DFF E+EIRMRSH
Sbjct: 609 QNQLIGNPHQVQLPSNESMLALGPPPATTPGFQSVGTSN-LNYR-VDDFFPEDEIRMRSH 666

Query: 530 EMLENEDMQQHLLRIFNMGGQGHPSFNVAEDAYPYSSPFMANPSPNYSFDDDSSRSSGKA 589
           EMLEN+DM QHLLRIFNMG  GH S NV +D YPYSS +M   S  Y FD+D SRSSGKA
Sbjct: 667 EMLENDDM-QHLLRIFNMGNHGHASANVTDDGYPYSSAYMPTSSTGYGFDEDRSRSSGKA 725

Query: 590 VVGWLKLKAALRWGIFIRKKAAERRAQLVELDD 622
           VVGWLKLKAALRWGIF+RKKAAERRAQLVELD+
Sbjct: 726 VVGWLKLKAALRWGIFVRKKAAERRAQLVELDE 758




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302144195|emb|CBI23322.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147785125|emb|CAN66517.1| hypothetical protein VITISV_001611 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224114057|ref|XP_002316655.1| predicted protein [Populus trichocarpa] gi|222859720|gb|EEE97267.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224147096|ref|XP_002336406.1| predicted protein [Populus trichocarpa] gi|222834923|gb|EEE73372.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357475877|ref|XP_003608224.1| Calmodulin-binding protein [Medicago truncatula] gi|355509279|gb|AES90421.1| Calmodulin-binding protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356521307|ref|XP_003529298.1| PREDICTED: uncharacterized protein LOC100812605 [Glycine max] Back     alignment and taxonomy information
>gi|356555022|ref|XP_003545838.1| PREDICTED: uncharacterized protein LOC100802994 [Glycine max] Back     alignment and taxonomy information
>gi|356527925|ref|XP_003532556.1| PREDICTED: uncharacterized protein LOC100806393 [Glycine max] Back     alignment and taxonomy information
>gi|224114061|ref|XP_002316656.1| predicted protein [Populus trichocarpa] gi|222859721|gb|EEE97268.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query623
TAIR|locus:2054000622 AT2G18750 [Arabidopsis thalian 0.959 0.961 0.612 6.3e-195
TAIR|locus:2117557601 AT4G25800 [Arabidopsis thalian 0.930 0.965 0.640 9.2e-194
TAIR|locus:2061112599 AT2G24300 [Arabidopsis thalian 0.733 0.762 0.607 1.5e-168
TAIR|locus:2174522647 AT5G57580 [Arabidopsis thalian 0.821 0.791 0.629 2e-166
TAIR|locus:2126679562 AT4G31000 [Arabidopsis thalian 0.611 0.677 0.651 7.7e-159
TAIR|locus:505006222451 SARD1 "AT1G73805" [Arabidopsis 0.598 0.827 0.446 2.1e-77
TAIR|locus:2148548563 CBP60G "Cam-binding protein 60 0.565 0.625 0.396 5.4e-63
TAIR|locus:2054000 AT2G18750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1888 (669.7 bits), Expect = 6.3e-195, P = 6.3e-195
 Identities = 394/643 (61%), Positives = 480/643 (74%)

Query:     1 MQTRYMERSNS---KRGL--DSSSAEEGQPDRKRPALASVIVEALKVDSLQKLCSSLEPI 55
             MQTRYMER+NS   KR L  D +  ++ QP+RKRPALASVIVEALK+DSLQ+LCSSLEPI
Sbjct:     1 MQTRYMERTNSMREKRKLEEDDNQQQQQQPERKRPALASVIVEALKMDSLQRLCSSLEPI 60

Query:    56 LRRVVSEEVERALAKLGPAKLTGRSSPKRIEGPDGRNLQLHFRTRLSLPLFTGGKVEGEQ 115
             LRRVVSEEVERALAKLGPA+L+ RSSPKRIEG  GRNLQL FR+RLS+PLFTGGK+EGEQ
Sbjct:    61 LRRVVSEEVERALAKLGPARLSERSSPKRIEGIGGRNLQLQFRSRLSVPLFTGGKIEGEQ 120

Query:   116 GTAIHIVLIDANTGHVVTTGPESLVKLDVVVLEGDFNNEDDDNWTQEEFVSHVVKEREGK 175
             G AIH+VL+D  TGHV+T GPE+  KLDVVVL+GDFN EDDD W+ EEF  H+VKER+GK
Sbjct:   121 GAAIHVVLLDMTTGHVLTVGPEASAKLDVVVLDGDFNTEDDDGWSGEEFEGHLVKERQGK 180

Query:   176 RPLLSGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAKTDAF 235
             RPLL+GD+QVTLKEGVGTLG+L FTDNSSWIR RKFRLGL+V+SGYCEG+R+REAKT+AF
Sbjct:   181 RPLLTGDVQVTLKEGVGTLGELIFTDNSSWIRCRKFRLGLRVSSGYCEGMRVREAKTEAF 240

Query:   236 TVKDHRGELYKKHYPPALNDEVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRL 295
             TVKDHRGELYKKHYPPAL+DEVWRLEKIGKDG+FHK+LNKAGI+ V++FLRL+V+DSQ+L
Sbjct:   241 TVKDHRGELYKKHYPPALDDEVWRLEKIGKDGAFHKKLNKAGIYNVKEFLRLMVKDSQKL 300

Query:   296 RNILGSGMSNKMWDVLVDHAKTCVLSGKLYVYYPDDPRNVGVVFNNIYEFCGLIADGQYH 355
             R ILGSGMSN+MW+ L +H+KTCVLS  LYVYYP+D  +VGVVFNNIYEF GLI+  QY+
Sbjct:   301 RTILGSGMSNRMWETLAEHSKTCVLSEMLYVYYPED--SVGVVFNNIYEFSGLISGKQYY 358

Query:   356 SADSLSESQKVHVDTLVKKAYDNWMHVIEYDGKSLLGFTQNKSVDAPPTDFQTGPPNYTN 415
              ADSLS++QK +VD LV+KAY+NW  VIEYD KSL+ F Q    D    D     P  + 
Sbjct:   359 PADSLSDNQKGYVDGLVRKAYENWEQVIEYDSKSLMNFNQVSKTD----DIDYSMP-VSV 413

Query:   416 PFSQQLALPTLSVPVPPEQPSMDSGYNDGIPSRFSLQSQNVNINSQFDGTSFPQQNPLVS 475
             P     +   ++V    + P+         P +  L          F  +SF  Q+ LV+
Sbjct:   414 PSQPSTSYSDVTVEAYNQSPA------SSFPGQSQLADTTY---MHFGNSSFAPQDQLVN 464

Query:   476 VPHEAHIPRSENV---LALGPPQSSSLVSQTIGTSNPAP----Y--------RGIEDFFS 520
               HE+    + N    LALGP   S    Q +   +P P    Y        RG++ F S
Sbjct:   465 NTHESQSMINSNGGVRLALGPATGSQNQEQLV---HPPPEINSYNDWSNTCNRGVDGFLS 521

Query:   521 EEEIRMRSHEMLENEDMQQHLLRIFNM-GGQGHPSFNVAEDAYPYSSPFMANPSPNYSFD 579
             EEEIR RS+EMLEN+DMQQ LLR+F+M GG      N+ ED++ + S F      +Y  +
Sbjct:   522 EEEIRARSNEMLENDDMQQ-LLRLFSMNGGDQQTPLNMGEDSFGFHS-FGQTSMADY--E 577

Query:   580 DDSSRSSGKAVVGWLKLKAALRWGIFIRKKAAERRAQLVELDD 622
             +D S +SGKAVVGWLK+KAA+RWG FIR+KAA+RRAQ+V+LD+
Sbjct:   578 EDRS-NSGKAVVGWLKIKAAMRWGFFIRRKAAQRRAQIVQLDE 619




GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005516 "calmodulin binding" evidence=TAS;IPI
GO:0006487 "protein N-linked glycosylation" evidence=RCA
TAIR|locus:2117557 AT4G25800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061112 AT2G24300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174522 AT5G57580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126679 AT4G31000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006222 SARD1 "AT1G73805" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148548 CBP60G "Cam-binding protein 60-like G" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query623
pfam07887301 pfam07887, Calmodulin_bind, Calmodulin binding pro 1e-172
>gnl|CDD|219620 pfam07887, Calmodulin_bind, Calmodulin binding protein-like Back     alignment and domain information
 Score =  491 bits (1265), Expect = e-172
 Identities = 186/302 (61%), Positives = 233/302 (77%), Gaps = 2/302 (0%)

Query: 92  NLQLHFRTRLSLPLFTGGKVEGEQGTAIHIVLIDANTGHVVTTGPESLVKLDVVVLEGDF 151
            L+L F  +LSLP+FTG K+E E G  I I L+DANTG  VT+GP S  KL+VVVL GDF
Sbjct: 1   RLKLVFLNKLSLPIFTGSKIEAEDGAPIKIALVDANTG--VTSGPLSSAKLEVVVLHGDF 58

Query: 152 NNEDDDNWTQEEFVSHVVKEREGKRPLLSGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKF 211
           N+EDD+NWT+EEF  ++VKEREGKRPLL+GD+ VTLK GV  +G++ FTDNSSW RSRKF
Sbjct: 59  NSEDDENWTEEEFNKNIVKEREGKRPLLTGDVTVTLKNGVAVIGEIFFTDNSSWTRSRKF 118

Query: 212 RLGLKVASGYCEGIRIREAKTDAFTVKDHRGELYKKHYPPALNDEVWRLEKIGKDGSFHK 271
           RLG +V  G  +G+R+REA T++F VKDHRGELYKKH+PP+L DEVWRLEKIGKDG+FHK
Sbjct: 119 RLGARVVDGSYDGVRVREAVTESFVVKDHRGELYKKHHPPSLEDEVWRLEKIGKDGAFHK 178

Query: 272 RLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCVLSGKLYVYYPDD 331
           RL  +GI TV+DFLRL+ RD  +LR ILGSGMSNKMW+  + HAKTCVL  K Y+Y P  
Sbjct: 179 RLTASGINTVKDFLRLLHRDPNKLRQILGSGMSNKMWETTISHAKTCVLGDKCYIYRPAS 238

Query: 332 PRNVGVVFNNIYEFCGLIADGQYHSADSLSESQKVHVDTLVKKAYDNWMHVIEYDGKSLL 391
            +NVG+ FN++YE  G+  DG Y  A++LSE Q+  V+ LVK+AY NW ++ EYD + L 
Sbjct: 239 EKNVGLFFNSVYELVGVSFDGSYVPANNLSELQQAAVNQLVKQAYQNWNNIEEYDHEMLN 298

Query: 392 GF 393
            +
Sbjct: 299 NY 300


The members of this family are putative or actual calmodulin binding proteins expressed by various plant species. Some members , are known to be involved in the induction of plant defence responses. However, their precise function in this regards is as yet unknown. Length = 301

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 623
PF07887299 Calmodulin_bind: Calmodulin binding protein-like; 100.0
TIGR02239316 recomb_RAD51 DNA repair protein RAD51. This eukary 85.96
TIGR02238313 recomb_DMC1 meiotic recombinase Dmc1. This model d 83.86
PLN03186342 DNA repair protein RAD51 homolog; Provisional 83.62
>PF07887 Calmodulin_bind: Calmodulin binding protein-like; InterPro: IPR012416 The members of this family are putative or actual calmodulin binding proteins expressed by various plant species Back     alignment and domain information
Probab=100.00  E-value=1.5e-121  Score=936.37  Aligned_cols=299  Identities=69%  Similarity=1.159  Sum_probs=295.1

Q ss_pred             ceEEEEcCCCCCCcccCCcccccCCCceEEEEEeCCCCceeccCCCccceEEEEEeeCCCCCCCCCCCCHHHHhhccccc
Q 006980           92 NLQLHFRTRLSLPLFTGGKVEGEQGTAIHIVLIDANTGHVVTTGPESLVKLDVVVLEGDFNNEDDDNWTQEEFVSHVVKE  171 (623)
Q Consensus        92 ~~~L~F~n~l~~pifTg~kI~ae~g~~I~V~L~D~~tg~iVt~GplSs~kvEIvVLdGDF~~~~~e~WT~eEF~~~IVk~  171 (623)
                      +|||+|+|+|++|||||++|+|+||+||+|+|+|++|+  |++||+|++|||||||||||+++++++||+|||++|||++
T Consensus         1 ~~~L~F~n~l~~pifT~~~i~a~~g~~i~V~l~d~~~~--v~~g~lss~kieIvvLdGdF~~~~~~~wT~eeF~~~iv~~   78 (299)
T PF07887_consen    1 NLQLRFLNKLSLPIFTGSKIEAEDGAPIKVALVDANTG--VTSGPLSSAKIEIVVLDGDFNDEDCEDWTEEEFNSHIVKE   78 (299)
T ss_pred             CeEEEecCCCCCCcccCCceEecCCCcEEEEEEECCCC--ccCCCCCCcEEEEEEEccccCCCccCCCCHHHHhhcEeec
Confidence            68999999999999999999999999999999999988  9999999999999999999999999999999999999999


Q ss_pred             CCCCCCccccceEEEecCceeeccCceeecCCCcccccccEEEEEeecCCCCccceeeecccceEEeeCCccccccCCCC
Q 006980          172 REGKRPLLSGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAKTDAFTVKDHRGELYKKHYPP  251 (623)
Q Consensus       172 ReGk~pLL~Gdl~v~L~~Gva~l~di~FTDnSsw~rSrKFRLgaRv~~~~~~g~RI~EAvsE~FvVkDhRge~ykKh~pP  251 (623)
                      |+||+|||+|+|+|+|+||+|+|+||+|||||||+|||||||||||+++++.|+|||||+||||+|||||||+|||||||
T Consensus        79 r~gk~pLL~G~~~v~L~~G~a~l~di~FtdnSs~~rsrKFRLgarv~~~~~~~~rI~Eavse~FvVkd~Rge~~kKh~pP  158 (299)
T PF07887_consen   79 REGKRPLLTGDLQVTLKNGVATLGDISFTDNSSWIRSRKFRLGARVVSGSCDGVRIREAVSEPFVVKDHRGELYKKHYPP  158 (299)
T ss_pred             CCCCCCCCCccEEEEecCCEEEccccEEecCcccccCCcEEEEEEEccCCCCCceeEEeeecCEEEEecccccccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccceeeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhcccccCCceEEEecCC
Q 006980          252 ALNDEVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCVLSGKLYVYYPDD  331 (623)
Q Consensus       252 ~L~DeVwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~~k~y~y~~~~  331 (623)
                      +|+|||||||||||||+|||+|+.+||+||+|||+++++||++||+|||+|||++||++||+|||||++++++|+|| ++
T Consensus       159 ~L~DeVwRLe~Igk~G~~hk~L~~~~I~tV~dFl~l~~~d~~~Lr~ilg~~ms~k~We~~v~HA~tCvl~~~~y~y~-~~  237 (299)
T PF07887_consen  159 SLDDEVWRLEKIGKDGAFHKRLKKNGINTVEDFLKLLNKDPQKLREILGSGMSNKMWETTVEHAKTCVLGDKLYVYY-DE  237 (299)
T ss_pred             CCCCchhhhhhccccCHHHHHHHHcCCccHHHHHHHHhcCHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCcEEEEE-ec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999 56


Q ss_pred             CCceEEEEccccceeeeecCCeeecCCCCChHhHHHHHHHHHHHHhcccccccccCccccCc
Q 006980          332 PRNVGVVFNNIYEFCGLIADGQYHSADSLSESQKVHVDTLVKKAYDNWMHVIEYDGKSLLGF  393 (623)
Q Consensus       332 ~~nvgl~FN~i~~lVG~~~~g~y~s~d~L~~~qk~~V~~Lk~~AY~nw~~~~e~D~~~l~n~  393 (623)
                      ++|++|+|||||+||||+|+|+|++.|+||+.||++|++||++||+||++|++||++|++|+
T Consensus       238 ~~nv~l~FN~i~~lvga~~~g~y~s~d~L~~~qK~~v~~Lv~~AY~n~~~l~e~d~~~~~n~  299 (299)
T PF07887_consen  238 EQNVGLFFNCIYELVGAIFGGQYVSLDNLSSAQKAYVDKLVKQAYENWDNLEEYDGKMLNNY  299 (299)
T ss_pred             CCceEEEEcchhhEEeEEECCEEEehHHcCHHHHHHHHHHHHHHHHhhhhheecccchhccC
Confidence            78999999999999999999999999999999999999999999999999999999999986



Some members (for example, Q8H6T7 from SWISSPROT), are known to be involved in the induction of plant defence responses []. However, their precise function in this regard is as yet unknown.

>TIGR02239 recomb_RAD51 DNA repair protein RAD51 Back     alignment and domain information
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1 Back     alignment and domain information
>PLN03186 DNA repair protein RAD51 homolog; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query623
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 44.5 bits (104), Expect = 1e-04
 Identities = 54/400 (13%), Positives = 111/400 (27%), Gaps = 135/400 (33%)

Query: 42  VDSLQKLCSSLEPILRRVVSEEVERALAKLGPAKLTGRSSPKRIEGPDG--RNLQLHFRT 99
           ++ LQKL   ++P      +   + +            +   RI       R L      
Sbjct: 199 LEMLQKLLYQIDPNW----TSRSDHS-----------SNIKLRIHSIQAELRRLLKSKPY 243

Query: 100 RLSLPLFTGGKVEGEQGTAIHIVLID-ANTGHV----------VTTGPESLVKLDVVVLE 148
              L                 +VL++  N              +TT  + +   D +   
Sbjct: 244 ENCL-----------------LVLLNVQNAKAWNAFNLSCKILLTTRFKQVT--DFLSAA 284

Query: 149 GDFN---NEDDDNWTQEE-------FVSHVVKE--REGKR--PLLSGDLQVTLKEGVGTL 194
              +   +      T +E       ++    ++  RE     P     +  ++++G+ T 
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344

Query: 195 GDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAKTDAFTVKDHRGELYKK------- 247
                 DN  W      +L             I E+  +     ++R +++ +       
Sbjct: 345 ------DN--WKHVNCDKL-----------TTIIESSLNVLEPAEYR-KMFDRLSVFPPS 384

Query: 248 -HYPPALNDEVWRLEKIGKD-----GSFHKRL-----NKAGIFTVEDF---LRLVVRDSQ 293
            H P  L   +W  + I  D        HK        K    ++      L++ + +  
Sbjct: 385 AHIPTILLSLIW-FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 294 RLRNILGSGMSNKMWDVLVDHAKTCVLSGKLYVYYPDDPRNVGVVFNNIYEFCGLIADGQ 353
            L               +VDH         +   +  D      +    Y   G      
Sbjct: 444 ALHRS------------IVDHY-------NIPKTFDSDDLIPPYLDQYFYSHIG------ 478

Query: 354 YHSADSLSESQKVHVDTLVKKAY-D-NWMHV-IEYDGKSL 390
           +H    L   +     TL +  + D  ++   I +D  + 
Sbjct: 479 HH----LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query623
1wcn_A70 Transcription elongation protein NUSA; RNA-binding 91.22
2kz3_A83 Putative uncharacterized protein RAD51L3; RAD51D, 85.83
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B Back     alignment and structure
Probab=91.22  E-value=0.039  Score=45.56  Aligned_cols=62  Identities=24%  Similarity=0.440  Sum_probs=51.0

Q ss_pred             CCccceeeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhcc-cccC
Q 006980          253 LNDEVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKT-CVLS  321 (623)
Q Consensus       253 L~DeVwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAkt-Cvl~  321 (623)
                      +.|++-.|++|+..-+  ++|.++||+||+|+..   .+...|-.|.  |+|...=+.++.-|+. |-+.
T Consensus         5 ~~~~l~~L~Gi~~~~~--~kL~e~Gi~TvedlA~---~~~~eL~~i~--gise~kA~~ii~aAr~~~w~~   67 (70)
T 1wcn_A            5 PADDLLNLEGVDRDLA--FKLAARGVCTLEDLAE---QGIDDLADIE--GLTDEKAGALIMAARNICWFG   67 (70)
T ss_dssp             CCHHHHSSTTCCHHHH--HHHHTTTCCSHHHHHT---SCHHHHHTSS--SCCHHHHHHHHHHHHHHHTTC
T ss_pred             hhhHHHHcCCCCHHHH--HHHHHcCCCcHHHHHc---CCHHHHHHcc--CCCHHHHHHHHHHHHHccCcc
Confidence            4567778887777655  8999999999998765   4788898887  7999999999999998 7553



>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query623
d1szpa164 DNA repair protein Rad51, N-terminal domain {Baker 88.26
>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: SAM domain-like
superfamily: Rad51 N-terminal domain-like
family: DNA repair protein Rad51, N-terminal domain
domain: DNA repair protein Rad51, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.26  E-value=0.076  Score=41.36  Aligned_cols=52  Identities=27%  Similarity=0.313  Sum_probs=43.4

Q ss_pred             eeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhccccc
Q 006980          262 KIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCVL  320 (623)
Q Consensus       262 kIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl  320 (623)
                      +||...+  ++|.++|++||++..   +..++.|-+|-  |++.+.=+.+++-|+.++.
T Consensus        10 Gig~~~~--~kL~~aG~~Tve~ia---~~t~~~L~~i~--Gi~e~~a~KIi~~A~k~~~   61 (64)
T d1szpa1          10 GITMADV--KKLRESGLHTAEAVA---YAPRKDLLEIK--GISEAKADKLLNEAARLVP   61 (64)
T ss_dssp             TCCHHHH--HHHHTTSCCSHHHHH---HSCSHHHHTST--TCCHHHHHHHHHHHHHHSC
T ss_pred             CCCHHHH--HHHHHcCCCcHHHHH---hCCHHHHHHcC--CCCHHHHHHHHHHHHHHcC
Confidence            5666555  899999999999874   56777888885  8999999999999998764