Query 006981
Match_columns 623
No_of_seqs 775 out of 3913
Neff 10.7
Searched_HMMs 46136
Date Thu Mar 28 17:15:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006981.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006981hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.4E-92 2.9E-97 773.3 73.4 594 22-615 367-960 (1060)
2 PLN03077 Protein ECB2; Provisi 100.0 4.2E-69 9.1E-74 600.9 46.5 557 31-621 57-702 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 1.1E-67 2.3E-72 589.6 52.0 545 27-611 150-771 (857)
4 PLN03218 maturation of RBCL 1; 100.0 4.1E-63 8.8E-68 541.8 59.6 470 64-572 373-849 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 3.2E-63 6.8E-68 540.8 50.7 497 72-611 98-608 (697)
6 PLN03081 pentatricopeptide (PP 100.0 2.3E-59 5E-64 510.5 43.9 416 32-464 94-516 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.1E-26 6.7E-31 261.5 62.8 517 32-569 336-869 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 5.9E-26 1.3E-30 259.2 62.0 513 29-562 367-898 (899)
9 PRK11788 tetratricopeptide rep 99.9 1E-20 2.2E-25 193.8 34.7 299 101-407 44-351 (389)
10 PRK11788 tetratricopeptide rep 99.9 6.4E-20 1.4E-24 187.9 36.5 303 134-445 42-354 (389)
11 PRK11447 cellulose synthase su 99.9 4.9E-17 1.1E-21 187.0 61.7 373 21-402 58-523 (1157)
12 PRK11447 cellulose synthase su 99.9 6.5E-18 1.4E-22 194.2 51.3 389 33-438 277-700 (1157)
13 KOG4626 O-linked N-acetylgluco 99.9 1.2E-18 2.6E-23 170.2 33.0 419 29-470 52-478 (966)
14 PRK15174 Vi polysaccharide exp 99.9 7.3E-17 1.6E-21 173.6 48.0 329 97-437 47-380 (656)
15 KOG4626 O-linked N-acetylgluco 99.9 2.8E-18 6.2E-23 167.5 32.3 392 33-445 90-490 (966)
16 PRK15174 Vi polysaccharide exp 99.9 5.3E-17 1.2E-21 174.6 45.3 321 71-402 52-380 (656)
17 TIGR00990 3a0801s09 mitochondr 99.8 1.9E-16 4.2E-21 170.9 47.5 388 33-438 135-571 (615)
18 PRK10049 pgaA outer membrane p 99.8 1.8E-16 3.8E-21 174.3 46.7 403 28-445 17-461 (765)
19 TIGR00990 3a0801s09 mitochondr 99.8 3.2E-16 6.8E-21 169.3 46.2 358 32-403 167-571 (615)
20 KOG4422 Uncharacterized conser 99.8 1.2E-15 2.6E-20 143.2 43.3 410 21-439 112-591 (625)
21 PRK14574 hmsH outer membrane p 99.8 2E-14 4.4E-19 155.0 49.5 443 20-475 29-517 (822)
22 PRK10049 pgaA outer membrane p 99.8 6.1E-15 1.3E-19 162.2 45.1 389 68-469 22-454 (765)
23 PRK09782 bacteriophage N4 rece 99.8 1.8E-13 3.8E-18 151.0 55.1 505 37-571 56-711 (987)
24 PRK09782 bacteriophage N4 rece 99.8 6.5E-13 1.4E-17 146.6 55.7 475 39-535 122-711 (987)
25 PRK14574 hmsH outer membrane p 99.7 2.7E-12 5.9E-17 138.8 48.2 416 69-493 42-503 (822)
26 KOG2002 TPR-containing nuclear 99.7 2.4E-12 5.2E-17 133.3 42.5 427 21-454 266-726 (1018)
27 KOG4422 Uncharacterized conser 99.7 1.3E-11 2.8E-16 116.5 40.4 314 91-411 115-470 (625)
28 KOG2002 TPR-containing nuclear 99.7 4.4E-12 9.5E-17 131.4 40.8 404 37-451 319-758 (1018)
29 KOG2003 TPR repeat-containing 99.6 9.7E-13 2.1E-17 124.6 30.9 409 37-456 213-706 (840)
30 KOG2076 RNA polymerase III tra 99.6 7.9E-11 1.7E-15 121.5 40.4 367 30-401 144-553 (895)
31 KOG1155 Anaphase-promoting com 99.6 1.7E-10 3.7E-15 110.3 38.6 258 170-436 235-493 (559)
32 PF13429 TPR_15: Tetratricopep 99.6 2.5E-14 5.4E-19 138.8 12.8 257 100-364 16-273 (280)
33 TIGR00540 hemY_coli hemY prote 99.5 3.1E-11 6.8E-16 123.3 34.7 291 73-366 96-397 (409)
34 KOG2076 RNA polymerase III tra 99.5 1.5E-10 3.2E-15 119.5 39.0 359 73-436 151-553 (895)
35 PF13429 TPR_15: Tetratricopep 99.5 4.4E-14 9.5E-19 137.1 12.8 259 30-296 13-275 (280)
36 KOG1915 Cell cycle control pro 99.5 2.3E-09 4.9E-14 102.9 43.1 415 37-466 85-531 (677)
37 PRK10747 putative protoheme IX 99.5 4.8E-11 1E-15 121.2 34.2 285 105-402 97-389 (398)
38 PRK10747 putative protoheme IX 99.5 6.4E-11 1.4E-15 120.4 34.9 283 140-437 97-389 (398)
39 KOG1155 Anaphase-promoting com 99.5 1.2E-09 2.5E-14 104.8 39.2 292 135-437 235-535 (559)
40 TIGR00540 hemY_coli hemY prote 99.5 1.4E-10 3.1E-15 118.5 34.7 286 103-399 95-395 (409)
41 KOG0495 HAT repeat protein [RN 99.5 1.3E-08 2.8E-13 101.6 45.2 416 24-456 375-799 (913)
42 KOG0495 HAT repeat protein [RN 99.5 8.9E-08 1.9E-12 95.8 50.8 366 75-456 390-765 (913)
43 KOG2003 TPR repeat-containing 99.5 1.7E-10 3.6E-15 109.8 30.4 420 37-466 161-684 (840)
44 COG2956 Predicted N-acetylgluc 99.5 2.7E-10 5.8E-15 104.2 30.1 284 38-366 48-345 (389)
45 COG2956 Predicted N-acetylgluc 99.5 1.2E-09 2.6E-14 99.9 34.0 289 105-436 48-345 (389)
46 KOG1126 DNA-binding cell divis 99.4 9.1E-11 2E-15 117.4 25.7 283 142-438 334-620 (638)
47 KOG1126 DNA-binding cell divis 99.4 7.6E-11 1.7E-15 118.0 25.1 261 177-449 334-595 (638)
48 COG3071 HemY Uncharacterized e 99.4 2.5E-09 5.5E-14 101.0 32.7 285 105-401 97-388 (400)
49 KOG4318 Bicoid mRNA stability 99.4 3.4E-10 7.4E-15 116.3 26.1 250 115-389 13-286 (1088)
50 KOG1915 Cell cycle control pro 99.3 2.3E-07 5E-12 89.5 42.0 357 72-439 84-467 (677)
51 KOG0547 Translocase of outer m 99.3 1.9E-08 4.2E-13 97.2 34.3 389 33-437 123-565 (606)
52 COG3071 HemY Uncharacterized e 99.3 2.1E-08 4.5E-13 94.9 33.5 285 140-437 97-389 (400)
53 PF13041 PPR_2: PPR repeat fam 99.3 4.2E-12 9.1E-17 86.4 6.4 50 372-421 1-50 (50)
54 KOG2047 mRNA splicing factor [ 99.3 1.6E-07 3.5E-12 93.8 40.5 409 34-452 111-630 (835)
55 TIGR02521 type_IV_pilW type IV 99.3 2.3E-09 5E-14 101.0 27.4 199 127-330 31-229 (234)
56 PRK12370 invasion protein regu 99.3 2.5E-09 5.4E-14 113.7 29.9 249 74-334 274-536 (553)
57 KOG1173 Anaphase-promoting com 99.3 1.3E-08 2.8E-13 100.2 30.7 368 72-454 152-532 (611)
58 KOG4318 Bicoid mRNA stability 99.3 9.1E-10 2E-14 113.3 23.5 253 148-424 11-286 (1088)
59 PF13041 PPR_2: PPR repeat fam 99.3 1.2E-11 2.6E-16 84.1 6.7 50 160-209 1-50 (50)
60 TIGR02521 type_IV_pilW type IV 99.3 5.2E-09 1.1E-13 98.6 27.1 202 91-298 30-232 (234)
61 PRK12370 invasion protein regu 99.3 1E-08 2.2E-13 109.1 31.3 249 143-403 277-535 (553)
62 KOG1173 Anaphase-promoting com 99.3 3.7E-08 8.1E-13 97.1 32.1 287 123-419 240-532 (611)
63 KOG1156 N-terminal acetyltrans 99.2 2.3E-06 5E-11 86.1 40.9 397 29-440 8-470 (700)
64 KOG0547 Translocase of outer m 99.2 3.8E-07 8.3E-12 88.4 33.7 201 244-453 336-546 (606)
65 PF12569 NARP1: NMDA receptor- 99.1 4.5E-07 9.7E-12 93.4 35.5 290 135-437 12-333 (517)
66 KOG1129 TPR repeat-containing 99.1 7.5E-09 1.6E-13 94.8 19.8 229 201-437 227-457 (478)
67 KOG2376 Signal recognition par 99.1 1.4E-05 3E-10 79.8 43.7 416 30-470 17-519 (652)
68 KOG1129 TPR repeat-containing 99.1 7.3E-09 1.6E-13 94.9 18.6 233 166-408 227-461 (478)
69 KOG1174 Anaphase-promoting com 99.1 2.3E-06 5E-11 81.4 35.0 308 123-444 190-504 (564)
70 PF12569 NARP1: NMDA receptor- 99.1 2.8E-07 6E-12 94.9 31.7 264 94-365 40-331 (517)
71 KOG1840 Kinesin light chain [C 99.1 2.3E-07 5E-12 94.3 29.5 240 197-436 199-477 (508)
72 KOG1840 Kinesin light chain [C 99.1 3.3E-07 7.1E-12 93.2 30.0 170 127-296 199-394 (508)
73 KOG1156 N-terminal acetyltrans 99.1 1.3E-05 2.8E-10 80.9 40.2 207 253-468 307-545 (700)
74 KOG3785 Uncharacterized conser 99.0 3.1E-06 6.6E-11 78.9 32.5 403 28-456 58-506 (557)
75 KOG3785 Uncharacterized conser 99.0 3.6E-06 7.7E-11 78.5 31.6 443 32-500 29-518 (557)
76 PRK11189 lipoprotein NlpI; Pro 99.0 2.3E-07 5E-12 90.3 24.8 196 93-299 65-266 (296)
77 PRK11189 lipoprotein NlpI; Pro 99.0 1.2E-06 2.6E-11 85.3 29.3 219 211-439 40-266 (296)
78 cd05804 StaR_like StaR_like; a 98.9 8.3E-06 1.8E-10 82.4 34.9 88 205-295 122-212 (355)
79 COG3063 PilF Tfp pilus assembl 98.9 2.2E-06 4.7E-11 75.6 25.3 200 129-333 37-236 (250)
80 cd05804 StaR_like StaR_like; a 98.9 1.4E-05 3.1E-10 80.6 35.5 305 127-437 6-335 (355)
81 COG3063 PilF Tfp pilus assembl 98.9 4.2E-06 9.1E-11 73.8 24.6 193 240-436 41-234 (250)
82 KOG2047 mRNA splicing factor [ 98.8 0.0002 4.4E-09 72.4 46.6 465 9-503 12-585 (835)
83 KOG1174 Anaphase-promoting com 98.8 0.00013 2.8E-09 69.9 39.6 417 30-464 48-493 (564)
84 KOG4162 Predicted calmodulin-b 98.8 7.8E-05 1.7E-09 77.0 36.1 201 58-262 320-541 (799)
85 PRK04841 transcriptional regul 98.8 7.5E-05 1.6E-09 85.6 41.1 337 102-438 384-760 (903)
86 KOG0624 dsRNA-activated protei 98.8 0.00011 2.5E-09 68.5 32.6 327 58-437 35-369 (504)
87 KOG2376 Signal recognition par 98.8 0.00019 4.2E-09 71.9 35.7 381 32-435 53-517 (652)
88 PF04733 Coatomer_E: Coatomer 98.8 3.4E-07 7.4E-12 87.8 16.1 82 249-332 182-264 (290)
89 KOG0624 dsRNA-activated protei 98.7 0.00035 7.7E-09 65.3 32.1 319 19-368 32-370 (504)
90 PRK04841 transcriptional regul 98.7 0.00018 3.8E-09 82.6 38.1 331 73-403 386-760 (903)
91 PF12854 PPR_1: PPR repeat 98.6 3.3E-08 7.2E-13 60.2 3.8 32 369-400 2-33 (34)
92 PF12854 PPR_1: PPR repeat 98.6 4.6E-08 1E-12 59.6 4.2 32 157-188 2-33 (34)
93 KOG0548 Molecular co-chaperone 98.6 0.00031 6.7E-09 69.8 31.8 404 32-470 9-454 (539)
94 KOG3616 Selective LIM binding 98.6 0.00024 5.3E-09 72.7 31.6 195 133-363 738-932 (1636)
95 PF04733 Coatomer_E: Coatomer 98.6 4.6E-06 1E-10 80.1 18.9 81 355-437 183-264 (290)
96 KOG1127 TPR repeat-containing 98.6 0.00021 4.6E-09 75.8 31.7 76 38-115 471-549 (1238)
97 KOG4162 Predicted calmodulin-b 98.6 0.0011 2.3E-08 68.9 35.3 210 122-333 318-542 (799)
98 PLN02789 farnesyltranstransfer 98.5 0.00012 2.7E-09 71.2 27.4 214 95-316 40-267 (320)
99 KOG1070 rRNA processing protei 98.5 6.2E-05 1.3E-09 82.3 27.1 234 194-434 1455-1696(1710)
100 KOG1070 rRNA processing protei 98.5 5.7E-05 1.2E-09 82.6 26.8 225 91-321 1457-1688(1710)
101 KOG3617 WD40 and TPR repeat-co 98.5 0.0011 2.4E-08 69.0 34.4 45 424-468 1306-1356(1416)
102 KOG4340 Uncharacterized conser 98.5 0.00055 1.2E-08 62.8 28.4 313 30-364 15-335 (459)
103 KOG0985 Vesicle coat protein c 98.5 0.002 4.3E-08 68.7 35.9 305 70-433 993-1303(1666)
104 KOG1125 TPR repeat-containing 98.5 1.1E-05 2.4E-10 80.4 18.7 221 207-436 295-525 (579)
105 KOG1914 mRNA cleavage and poly 98.5 0.0019 4.1E-08 64.4 34.2 390 51-452 12-480 (656)
106 KOG1128 Uncharacterized conser 98.5 1.6E-05 3.5E-10 81.3 19.2 216 129-367 400-615 (777)
107 KOG1125 TPR repeat-containing 98.5 4E-05 8.7E-10 76.6 21.3 252 137-395 295-563 (579)
108 KOG3616 Selective LIM binding 98.4 0.0002 4.3E-09 73.3 25.6 166 204-398 739-906 (1636)
109 PLN02789 farnesyltranstransfer 98.4 0.00037 8E-09 67.9 26.8 209 135-351 45-267 (320)
110 TIGR03302 OM_YfiO outer membra 98.4 5.2E-05 1.1E-09 71.5 20.0 187 89-298 30-232 (235)
111 KOG3617 WD40 and TPR repeat-co 98.4 0.00056 1.2E-08 71.1 27.8 231 70-330 737-993 (1416)
112 TIGR03302 OM_YfiO outer membra 98.4 7.4E-05 1.6E-09 70.4 20.6 186 125-334 31-233 (235)
113 KOG1128 Uncharacterized conser 98.4 3.1E-05 6.7E-10 79.3 18.5 239 192-453 393-632 (777)
114 KOG0985 Vesicle coat protein c 98.4 0.0046 9.9E-08 66.1 34.1 302 24-366 983-1306(1666)
115 COG5010 TadD Flp pilus assembl 98.3 0.00012 2.7E-09 66.1 19.5 157 98-260 72-228 (257)
116 KOG3081 Vesicle coat complex C 98.3 0.00056 1.2E-08 62.0 23.3 119 134-264 115-237 (299)
117 KOG0548 Molecular co-chaperone 98.3 0.0029 6.2E-08 63.2 29.2 355 71-453 12-401 (539)
118 KOG1914 mRNA cleavage and poly 98.3 0.0069 1.5E-07 60.6 33.9 406 26-437 17-500 (656)
119 COG5010 TadD Flp pilus assembl 98.2 0.00038 8.3E-09 63.1 20.6 158 201-364 70-227 (257)
120 COG4783 Putative Zn-dependent 98.2 0.0068 1.5E-07 60.0 30.8 217 213-454 253-472 (484)
121 PRK10370 formate-dependent nit 98.2 0.00031 6.6E-09 63.7 20.4 98 303-402 72-172 (198)
122 PRK10370 formate-dependent nit 98.2 0.00041 8.9E-09 62.8 20.9 120 247-369 52-174 (198)
123 PRK15359 type III secretion sy 98.2 8.7E-05 1.9E-09 63.5 15.5 95 95-191 27-121 (144)
124 KOG4340 Uncharacterized conser 98.2 0.0023 4.9E-08 58.9 24.7 194 96-301 14-210 (459)
125 COG4783 Putative Zn-dependent 98.2 0.0039 8.4E-08 61.7 27.6 242 24-298 201-454 (484)
126 PRK14720 transcript cleavage f 98.2 0.0014 3E-08 71.5 26.8 144 29-191 35-178 (906)
127 PRK14720 transcript cleavage f 98.2 0.0016 3.5E-08 71.0 27.1 239 89-385 28-268 (906)
128 PRK15179 Vi polysaccharide bio 98.1 0.0014 3.1E-08 70.6 26.2 163 230-402 82-244 (694)
129 TIGR00756 PPR pentatricopeptid 98.1 4.8E-06 1E-10 51.5 4.1 33 376-408 2-34 (35)
130 PRK15359 type III secretion sy 98.1 0.00031 6.8E-09 60.0 16.3 90 204-297 31-120 (144)
131 PRK15179 Vi polysaccharide bio 98.1 0.0021 4.5E-08 69.4 25.9 236 126-387 27-268 (694)
132 KOG3081 Vesicle coat complex C 98.1 0.0059 1.3E-07 55.6 24.3 116 316-436 149-269 (299)
133 TIGR00756 PPR pentatricopeptid 98.0 7E-06 1.5E-10 50.7 3.9 33 164-196 2-34 (35)
134 TIGR02552 LcrH_SycD type III s 98.0 0.00043 9.3E-09 58.7 15.1 94 130-225 20-113 (135)
135 PF13812 PPR_3: Pentatricopept 98.0 1.1E-05 2.3E-10 49.5 3.8 32 376-407 3-34 (34)
136 PF13812 PPR_3: Pentatricopept 97.9 1.5E-05 3.4E-10 48.8 4.0 33 163-195 2-34 (34)
137 TIGR02552 LcrH_SycD type III s 97.9 0.00045 9.7E-09 58.6 14.3 108 90-201 15-122 (135)
138 KOG1127 TPR repeat-containing 97.9 0.064 1.4E-06 57.9 32.7 183 177-367 473-658 (1238)
139 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00093 2E-08 66.5 15.8 125 165-297 172-296 (395)
140 PF10037 MRP-S27: Mitochondria 97.8 0.00053 1.2E-08 68.5 13.9 125 193-317 62-186 (429)
141 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00061 1.3E-08 67.8 14.3 126 93-225 170-296 (395)
142 PF01535 PPR: PPR repeat; Int 97.7 3.6E-05 7.9E-10 45.9 3.0 29 376-404 2-30 (31)
143 PF09976 TPR_21: Tetratricopep 97.7 0.0033 7.2E-08 53.9 16.1 86 170-259 56-143 (145)
144 PF10037 MRP-S27: Mitochondria 97.7 0.00062 1.4E-08 68.0 13.0 121 266-386 63-185 (429)
145 PF09976 TPR_21: Tetratricopep 97.7 0.0035 7.5E-08 53.8 15.8 21 242-262 56-76 (145)
146 PF01535 PPR: PPR repeat; Int 97.7 5.4E-05 1.2E-09 45.2 3.2 29 164-192 2-30 (31)
147 PF08579 RPM2: Mitochondrial r 97.6 0.00098 2.1E-08 52.1 10.3 77 97-173 30-115 (120)
148 KOG3060 Uncharacterized conser 97.6 0.052 1.1E-06 49.2 23.8 185 107-298 27-220 (289)
149 KOG3060 Uncharacterized conser 97.6 0.053 1.2E-06 49.2 23.4 82 247-330 99-180 (289)
150 PF08579 RPM2: Mitochondrial r 97.6 0.0012 2.7E-08 51.5 10.1 81 129-209 27-116 (120)
151 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0035 7.6E-08 51.5 14.0 21 203-223 45-65 (119)
152 KOG2053 Mitochondrial inherita 97.5 0.21 4.5E-06 53.6 43.8 221 34-264 18-256 (932)
153 cd00189 TPR Tetratricopeptide 97.5 0.0022 4.7E-08 49.8 11.7 90 98-189 6-95 (100)
154 KOG2053 Mitochondrial inherita 97.4 0.26 5.7E-06 52.8 42.7 222 74-301 22-258 (932)
155 PF06239 ECSIT: Evolutionarily 97.4 0.0028 6.1E-08 56.1 11.4 116 89-223 44-165 (228)
156 cd00189 TPR Tetratricopeptide 97.4 0.0042 9.2E-08 48.1 12.0 7 284-290 49-55 (100)
157 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.008 1.7E-07 49.3 14.0 99 200-298 5-105 (119)
158 PF06239 ECSIT: Evolutionarily 97.4 0.0041 8.9E-08 55.1 12.2 116 124-260 44-165 (228)
159 KOG2041 WD40 repeat protein [G 97.4 0.25 5.5E-06 51.3 30.2 38 413-450 1025-1063(1189)
160 PF05843 Suf: Suppressor of fo 97.3 0.0059 1.3E-07 58.8 14.2 81 213-297 52-135 (280)
161 PF05843 Suf: Suppressor of fo 97.3 0.0073 1.6E-07 58.2 14.0 131 198-333 2-136 (280)
162 PF14938 SNAP: Soluble NSF att 97.3 0.066 1.4E-06 51.8 20.7 151 310-478 100-267 (282)
163 PRK15363 pathogenicity island 97.2 0.0052 1.1E-07 52.0 11.2 82 37-120 47-131 (157)
164 PLN03088 SGT1, suppressor of 97.2 0.012 2.5E-07 59.0 15.1 89 101-191 11-99 (356)
165 PLN03088 SGT1, suppressor of 97.2 0.012 2.7E-07 58.8 15.0 85 316-402 14-98 (356)
166 PRK15363 pathogenicity island 97.1 0.017 3.7E-07 48.9 12.8 90 98-189 41-130 (157)
167 PF12895 Apc3: Anaphase-promot 97.1 0.0011 2.3E-08 50.8 5.1 80 352-434 2-83 (84)
168 PF12895 Apc3: Anaphase-promot 97.1 0.0013 2.8E-08 50.2 5.6 79 106-186 3-82 (84)
169 PRK02603 photosystem I assembl 97.1 0.03 6.5E-07 49.6 15.1 93 91-184 34-128 (172)
170 PRK02603 photosystem I assembl 97.0 0.04 8.6E-07 48.8 15.5 61 237-297 38-100 (172)
171 PRK10866 outer membrane biogen 97.0 0.19 4.2E-06 47.1 20.5 177 240-436 38-239 (243)
172 KOG2041 WD40 repeat protein [G 97.0 0.59 1.3E-05 48.7 26.9 59 374-432 1019-1080(1189)
173 KOG0553 TPR repeat-containing 97.0 0.0078 1.7E-07 55.9 10.6 94 74-170 94-190 (304)
174 PRK10866 outer membrane biogen 97.0 0.16 3.4E-06 47.7 19.6 58 344-401 180-239 (243)
175 KOG2796 Uncharacterized conser 97.0 0.29 6.3E-06 44.8 20.7 144 270-416 178-326 (366)
176 PRK10153 DNA-binding transcrip 97.0 0.055 1.2E-06 56.7 18.1 63 373-437 419-481 (517)
177 PF14559 TPR_19: Tetratricopep 96.9 0.003 6.5E-08 45.9 6.2 52 35-88 1-52 (68)
178 CHL00033 ycf3 photosystem I as 96.9 0.019 4.1E-07 50.7 12.4 27 236-262 74-100 (168)
179 KOG2796 Uncharacterized conser 96.9 0.33 7.2E-06 44.4 20.2 134 92-226 177-315 (366)
180 CHL00033 ycf3 photosystem I as 96.9 0.023 4.9E-07 50.2 12.8 81 92-173 35-117 (168)
181 PRK10153 DNA-binding transcrip 96.9 0.095 2.1E-06 55.0 18.7 60 163-224 421-480 (517)
182 PF14559 TPR_19: Tetratricopep 96.8 0.0052 1.1E-07 44.6 6.6 51 105-156 4-54 (68)
183 PF04840 Vps16_C: Vps16, C-ter 96.8 0.59 1.3E-05 45.7 28.0 109 271-399 179-287 (319)
184 PF12688 TPR_5: Tetratrico pep 96.8 0.068 1.5E-06 43.6 13.4 55 171-225 10-66 (120)
185 PF14938 SNAP: Soluble NSF att 96.8 0.12 2.6E-06 50.0 17.6 85 248-332 129-224 (282)
186 PF12688 TPR_5: Tetratrico pep 96.7 0.12 2.5E-06 42.2 14.3 89 100-190 9-103 (120)
187 KOG0550 Molecular chaperone (D 96.6 0.57 1.2E-05 45.9 20.2 176 232-438 166-350 (486)
188 KOG0553 TPR repeat-containing 96.6 0.029 6.2E-07 52.3 11.1 102 137-244 91-192 (304)
189 PF04840 Vps16_C: Vps16, C-ter 96.6 0.84 1.8E-05 44.6 28.5 107 306-432 179-285 (319)
190 KOG1538 Uncharacterized conser 96.5 0.24 5.2E-06 51.0 17.7 53 236-297 749-801 (1081)
191 KOG1538 Uncharacterized conser 96.5 0.13 2.7E-06 52.9 15.6 214 125-367 554-801 (1081)
192 COG4235 Cytochrome c biogenesi 96.4 0.097 2.1E-06 49.1 13.7 100 124-225 153-255 (287)
193 PF13432 TPR_16: Tetratricopep 96.4 0.013 2.9E-07 42.0 6.5 53 136-189 6-58 (65)
194 PF13432 TPR_16: Tetratricopep 96.4 0.015 3.3E-07 41.7 6.6 55 100-155 5-59 (65)
195 PF13525 YfiO: Outer membrane 96.4 0.58 1.2E-05 42.7 18.5 167 242-429 13-198 (203)
196 PF13414 TPR_11: TPR repeat; P 96.4 0.018 3.9E-07 41.8 7.0 62 92-154 3-65 (69)
197 KOG1130 Predicted G-alpha GTPa 96.3 0.11 2.5E-06 50.4 13.3 264 102-366 27-342 (639)
198 PF13414 TPR_11: TPR repeat; P 96.2 0.023 4.9E-07 41.3 7.0 60 236-296 5-65 (69)
199 PF13525 YfiO: Outer membrane 96.2 0.67 1.5E-05 42.2 18.0 47 345-393 147-197 (203)
200 PRK10803 tol-pal system protei 96.2 0.089 1.9E-06 49.8 12.4 96 165-262 146-245 (263)
201 COG4235 Cytochrome c biogenesi 96.2 0.29 6.2E-06 46.1 15.2 98 337-437 154-255 (287)
202 COG4700 Uncharacterized protei 96.1 0.83 1.8E-05 39.6 19.2 127 159-289 86-213 (251)
203 PRK10803 tol-pal system protei 96.0 0.16 3.4E-06 48.2 13.3 97 128-226 144-246 (263)
204 PF03704 BTAD: Bacterial trans 95.9 0.051 1.1E-06 46.6 8.7 57 131-188 66-122 (146)
205 PF03704 BTAD: Bacterial trans 95.8 0.064 1.4E-06 46.0 9.0 72 93-165 63-139 (146)
206 PF12921 ATP13: Mitochondrial 95.8 0.19 4E-06 41.5 11.1 49 229-277 47-96 (126)
207 KOG1130 Predicted G-alpha GTPa 95.7 0.17 3.7E-06 49.2 11.8 266 135-402 25-343 (639)
208 PF13371 TPR_9: Tetratricopept 95.7 0.079 1.7E-06 38.9 7.9 55 101-156 4-58 (73)
209 PF12921 ATP13: Mitochondrial 95.7 0.18 3.9E-06 41.5 10.5 57 191-248 46-102 (126)
210 KOG3941 Intermediate in Toll s 95.6 0.095 2.1E-06 48.3 9.4 123 83-224 56-186 (406)
211 PF13371 TPR_9: Tetratricopept 95.5 0.1 2.2E-06 38.3 7.9 56 135-191 3-58 (73)
212 KOG2280 Vacuolar assembly/sort 95.4 4.7 0.0001 42.9 24.5 107 307-432 687-793 (829)
213 PF09205 DUF1955: Domain of un 95.1 1.3 2.7E-05 36.2 13.0 18 382-399 128-145 (161)
214 KOG0550 Molecular chaperone (D 95.0 4 8.6E-05 40.3 24.3 258 33-298 57-350 (486)
215 COG4649 Uncharacterized protei 95.0 1.4 2.9E-05 37.9 13.6 122 34-155 67-195 (221)
216 COG3118 Thioredoxin domain-con 95.0 3.3 7.1E-05 39.1 18.0 51 138-189 145-195 (304)
217 KOG2114 Vacuolar assembly/sort 95.0 3.5 7.7E-05 44.4 19.4 115 33-153 342-457 (933)
218 PF04053 Coatomer_WDAD: Coatom 94.9 0.95 2.1E-05 46.5 15.3 131 129-294 297-427 (443)
219 COG4700 Uncharacterized protei 94.9 2.3 5E-05 37.0 18.8 128 301-432 86-216 (251)
220 smart00299 CLH Clathrin heavy 94.8 2.2 4.8E-05 36.0 16.0 83 133-223 13-95 (140)
221 KOG3941 Intermediate in Toll s 94.7 0.29 6.4E-06 45.2 9.7 36 390-425 139-174 (406)
222 PF07079 DUF1347: Protein of u 94.7 5.3 0.00011 40.0 42.5 420 37-468 18-521 (549)
223 COG3118 Thioredoxin domain-con 94.7 1.8 3.9E-05 40.8 14.8 143 33-179 142-289 (304)
224 PRK15331 chaperone protein Sic 94.7 0.26 5.7E-06 42.1 8.7 80 75-155 51-133 (165)
225 PF13281 DUF4071: Domain of un 94.6 5.2 0.00011 39.7 20.9 27 272-298 308-334 (374)
226 PF13424 TPR_12: Tetratricopep 94.6 0.12 2.6E-06 38.5 6.1 62 375-436 6-73 (78)
227 PF04053 Coatomer_WDAD: Coatom 94.5 1.3 2.9E-05 45.4 15.1 165 25-221 261-426 (443)
228 PLN03098 LPA1 LOW PSII ACCUMUL 94.5 0.76 1.6E-05 46.2 12.8 38 18-55 68-105 (453)
229 PRK15331 chaperone protein Sic 94.4 2.9 6.2E-05 35.9 15.1 89 277-367 45-133 (165)
230 PF13424 TPR_12: Tetratricopep 94.4 0.12 2.6E-06 38.5 5.8 62 340-401 6-73 (78)
231 smart00299 CLH Clathrin heavy 94.4 2.5 5.5E-05 35.7 14.7 124 239-385 12-136 (140)
232 PLN03098 LPA1 LOW PSII ACCUMUL 94.2 1.5 3.2E-05 44.2 14.1 65 90-156 73-141 (453)
233 PF09205 DUF1955: Domain of un 94.0 2.9 6.3E-05 34.2 12.9 138 281-440 14-151 (161)
234 COG3898 Uncharacterized membra 93.9 6.9 0.00015 38.4 32.1 286 74-378 97-399 (531)
235 COG3898 Uncharacterized membra 93.9 7 0.00015 38.3 31.5 222 209-444 166-398 (531)
236 PF13281 DUF4071: Domain of un 93.9 7.6 0.00017 38.6 20.5 175 132-334 146-335 (374)
237 PF10300 DUF3808: Protein of u 93.6 6.6 0.00014 41.0 18.4 93 130-224 191-294 (468)
238 PF10300 DUF3808: Protein of u 93.5 4.5 9.7E-05 42.2 16.9 92 237-330 191-293 (468)
239 KOG0543 FKBP-type peptidyl-pro 93.1 1.7 3.6E-05 42.8 12.0 78 375-455 258-335 (397)
240 PF13512 TPR_18: Tetratricopep 92.9 2.9 6.2E-05 35.0 11.6 77 99-175 17-95 (142)
241 KOG0543 FKBP-type peptidyl-pro 92.9 2 4.4E-05 42.2 12.3 61 200-263 260-320 (397)
242 COG1729 Uncharacterized protei 92.7 2 4.4E-05 40.0 11.4 59 240-298 184-244 (262)
243 PF08631 SPO22: Meiosis protei 92.6 10 0.00022 36.5 24.8 62 199-263 86-150 (278)
244 PF13512 TPR_18: Tetratricopep 92.6 3.1 6.7E-05 34.8 11.4 52 316-367 22-75 (142)
245 PF07079 DUF1347: Protein of u 92.6 13 0.00027 37.5 34.7 400 39-451 59-532 (549)
246 KOG4555 TPR repeat-containing 92.6 4.9 0.00011 32.8 11.9 90 102-192 53-145 (175)
247 COG3629 DnrI DNA-binding trans 92.5 1.6 3.4E-05 41.3 10.8 77 129-206 155-236 (280)
248 KOG2280 Vacuolar assembly/sort 92.4 18 0.00039 38.8 32.0 301 120-435 425-770 (829)
249 PF13428 TPR_14: Tetratricopep 92.1 0.64 1.4E-05 30.0 5.6 36 237-273 4-39 (44)
250 PF13170 DUF4003: Protein of u 92.0 4.7 0.0001 39.0 13.7 47 145-191 80-132 (297)
251 KOG2610 Uncharacterized conser 92.0 4.1 8.9E-05 39.0 12.6 116 174-294 115-234 (491)
252 PRK11906 transcriptional regul 92.0 9.2 0.0002 38.8 15.9 142 75-222 272-432 (458)
253 COG1729 Uncharacterized protei 91.9 2.7 5.9E-05 39.2 11.3 99 164-263 144-244 (262)
254 KOG1585 Protein required for f 91.8 10 0.00022 34.8 17.6 206 94-327 33-250 (308)
255 KOG2610 Uncharacterized conser 91.8 5.6 0.00012 38.1 13.2 118 139-261 115-236 (491)
256 KOG4555 TPR repeat-containing 91.7 3.7 8E-05 33.5 10.3 87 71-157 53-145 (175)
257 PF07035 Mic1: Colon cancer-as 91.4 9 0.0002 33.3 15.2 133 183-332 15-148 (167)
258 COG4105 ComL DNA uptake lipopr 91.3 12 0.00026 34.7 20.8 22 346-367 174-195 (254)
259 COG3629 DnrI DNA-binding trans 91.1 2.7 6E-05 39.8 10.8 77 236-313 155-236 (280)
260 PF09613 HrpB1_HrpK: Bacterial 90.9 9.1 0.0002 32.8 12.6 52 103-156 21-73 (160)
261 PF13170 DUF4003: Protein of u 90.9 16 0.00036 35.3 17.0 131 178-310 78-223 (297)
262 PF09613 HrpB1_HrpK: Bacterial 90.8 6.8 0.00015 33.6 11.7 50 37-88 22-71 (160)
263 COG0457 NrfG FOG: TPR repeat [ 90.5 13 0.00029 33.7 30.2 200 235-437 60-264 (291)
264 PF04184 ST7: ST7 protein; In 90.4 23 0.0005 36.3 17.2 59 309-367 264-323 (539)
265 KOG1920 IkappaB kinase complex 90.3 26 0.00057 39.8 18.4 137 165-329 911-1051(1265)
266 COG5107 RNA14 Pre-mRNA 3'-end 90.3 22 0.00047 35.8 34.1 145 304-454 397-545 (660)
267 PRK09687 putative lyase; Provi 90.2 18 0.00039 34.8 30.2 236 87-349 32-277 (280)
268 PRK11906 transcriptional regul 90.2 23 0.00051 36.0 18.0 78 287-366 322-399 (458)
269 PF13428 TPR_14: Tetratricopep 90.1 1.1 2.3E-05 28.9 5.2 21 134-154 8-28 (44)
270 PF04184 ST7: ST7 protein; In 90.0 25 0.00054 36.1 16.6 81 337-418 257-340 (539)
271 KOG1941 Acetylcholine receptor 89.9 20 0.00044 34.9 15.6 126 240-365 128-272 (518)
272 PF10602 RPN7: 26S proteasome 89.4 8.8 0.00019 34.0 12.0 96 129-224 38-140 (177)
273 KOG1941 Acetylcholine receptor 89.2 13 0.00029 36.1 13.4 165 271-436 85-273 (518)
274 KOG0276 Vesicle coat complex C 88.6 4.6 9.9E-05 41.9 10.5 156 30-222 591-746 (794)
275 KOG4570 Uncharacterized conser 88.4 6.2 0.00014 37.5 10.5 48 389-436 115-162 (418)
276 KOG2114 Vacuolar assembly/sort 88.2 14 0.00029 40.2 14.0 175 131-330 338-516 (933)
277 PF07035 Mic1: Colon cancer-as 87.8 18 0.00038 31.5 15.1 22 378-399 93-114 (167)
278 PF08631 SPO22: Meiosis protei 87.5 28 0.0006 33.5 27.5 161 103-268 4-191 (278)
279 PF10602 RPN7: 26S proteasome 86.9 7.1 0.00015 34.5 9.9 15 282-296 126-140 (177)
280 COG4649 Uncharacterized protei 86.9 20 0.00043 31.1 14.0 20 173-192 69-88 (221)
281 PF13176 TPR_7: Tetratricopept 86.6 1.7 3.6E-05 26.5 4.1 23 165-187 2-24 (36)
282 cd00923 Cyt_c_Oxidase_Va Cytoc 86.2 8.4 0.00018 29.6 8.2 62 390-453 23-85 (103)
283 KOG2066 Vacuolar assembly/sort 86.2 55 0.0012 35.6 27.9 151 31-189 362-532 (846)
284 PF13431 TPR_17: Tetratricopep 85.7 1.4 3.1E-05 26.5 3.4 30 259-289 4-33 (34)
285 PF13176 TPR_7: Tetratricopept 85.6 1.9 4.1E-05 26.3 4.0 23 95-117 2-24 (36)
286 COG0457 NrfG FOG: TPR repeat [ 85.5 27 0.00059 31.5 30.4 202 198-403 60-265 (291)
287 COG5107 RNA14 Pre-mRNA 3'-end 85.0 46 0.001 33.6 23.5 131 162-298 397-531 (660)
288 PF02284 COX5A: Cytochrome c o 84.7 17 0.00037 28.3 11.0 61 392-454 28-89 (108)
289 PF07575 Nucleopor_Nup85: Nup8 84.1 66 0.0014 34.7 17.8 146 290-453 391-539 (566)
290 KOG1464 COP9 signalosome, subu 83.9 37 0.00081 31.7 15.9 209 7-218 10-252 (440)
291 PF00515 TPR_1: Tetratricopept 83.7 2.5 5.3E-05 25.2 3.9 26 377-402 4-29 (34)
292 COG4105 ComL DNA uptake lipopr 83.4 39 0.00084 31.5 21.5 54 173-226 45-100 (254)
293 KOG0276 Vesicle coat complex C 83.2 13 0.00028 38.8 10.6 26 162-187 666-691 (794)
294 TIGR02561 HrpB1_HrpK type III 83.0 28 0.0006 29.5 10.8 51 37-89 22-72 (153)
295 PRK09687 putative lyase; Provi 82.8 47 0.001 32.0 30.5 137 268-420 141-278 (280)
296 KOG1550 Extracellular protein 82.7 74 0.0016 34.2 24.8 183 108-300 228-428 (552)
297 PF00515 TPR_1: Tetratricopept 82.0 3.7 8.1E-05 24.3 4.3 32 410-443 2-33 (34)
298 PF13431 TPR_17: Tetratricopep 81.5 2.2 4.7E-05 25.7 3.0 20 162-181 13-32 (34)
299 TIGR02561 HrpB1_HrpK type III 81.2 32 0.0007 29.1 11.3 49 104-156 22-73 (153)
300 KOG4570 Uncharacterized conser 81.2 22 0.00047 34.0 10.5 105 192-298 59-164 (418)
301 COG4785 NlpI Lipoprotein NlpI, 80.7 44 0.00095 30.3 17.5 180 248-439 79-267 (297)
302 KOG1586 Protein required for f 80.7 46 0.001 30.5 12.4 28 350-377 165-192 (288)
303 PF11207 DUF2989: Protein of u 80.6 18 0.0004 32.3 9.5 21 268-288 177-197 (203)
304 PF13929 mRNA_stabil: mRNA sta 80.1 56 0.0012 31.1 17.3 132 284-415 143-284 (292)
305 PF04097 Nic96: Nup93/Nic96; 79.1 1E+02 0.0022 33.6 17.1 43 167-210 116-158 (613)
306 PF13762 MNE1: Mitochondrial s 78.4 40 0.00087 28.5 11.9 80 377-456 42-127 (145)
307 TIGR02508 type_III_yscG type I 78.4 24 0.00052 27.4 8.1 85 108-200 21-105 (115)
308 PF07719 TPR_2: Tetratricopept 78.2 4.9 0.00011 23.7 3.9 23 379-401 6-28 (34)
309 KOG1258 mRNA processing protei 78.1 97 0.0021 32.7 39.1 128 27-156 43-180 (577)
310 COG2976 Uncharacterized protei 78.0 31 0.00067 30.7 9.9 127 28-157 53-189 (207)
311 cd00923 Cyt_c_Oxidase_Va Cytoc 77.9 19 0.00041 27.8 7.4 45 287-331 25-69 (103)
312 KOG1550 Extracellular protein 77.5 1.1E+02 0.0023 33.0 25.3 179 143-335 228-428 (552)
313 PRK11619 lytic murein transgly 76.8 1.2E+02 0.0026 33.2 38.5 165 250-434 295-464 (644)
314 KOG1920 IkappaB kinase complex 76.1 1.6E+02 0.0034 34.1 29.4 113 302-434 933-1051(1265)
315 PF13374 TPR_10: Tetratricopep 75.8 6.2 0.00013 24.5 4.1 25 376-400 4-28 (42)
316 PF07719 TPR_2: Tetratricopept 75.6 7.7 0.00017 22.8 4.3 28 410-437 2-29 (34)
317 PF00637 Clathrin: Region in C 75.6 0.94 2E-05 38.5 0.1 84 345-435 13-96 (143)
318 PF13374 TPR_10: Tetratricopep 74.9 7.9 0.00017 24.0 4.4 26 164-189 4-29 (42)
319 KOG1585 Protein required for f 74.2 75 0.0016 29.5 17.4 204 129-361 33-249 (308)
320 PRK11619 lytic murein transgly 72.8 1.5E+02 0.0033 32.5 30.4 252 140-412 254-514 (644)
321 TIGR02508 type_III_yscG type I 71.5 46 0.001 25.9 9.1 79 40-122 20-98 (115)
322 PF00637 Clathrin: Region in C 71.4 1.6 3.6E-05 37.0 0.7 53 134-186 14-66 (143)
323 COG4455 ImpE Protein of avirul 70.7 34 0.00073 31.0 8.4 20 239-258 40-59 (273)
324 PF10345 Cohesin_load: Cohesin 70.2 1.7E+02 0.0037 31.9 36.1 191 27-223 28-251 (608)
325 COG4455 ImpE Protein of avirul 70.0 33 0.00072 31.1 8.2 53 133-186 7-59 (273)
326 PF13762 MNE1: Mitochondrial s 69.4 69 0.0015 27.1 10.4 82 342-423 42-129 (145)
327 PF07163 Pex26: Pex26 protein; 68.2 47 0.001 31.4 9.2 87 204-292 90-181 (309)
328 COG1747 Uncharacterized N-term 68.0 1.6E+02 0.0034 30.6 25.1 181 90-279 64-249 (711)
329 COG3947 Response regulator con 67.5 1.2E+02 0.0026 29.0 16.0 70 377-447 282-356 (361)
330 COG4785 NlpI Lipoprotein NlpI, 67.3 1E+02 0.0022 28.1 17.1 178 73-264 77-267 (297)
331 PRK15180 Vi polysaccharide bio 66.8 62 0.0013 33.0 10.2 147 194-345 286-432 (831)
332 COG3947 Response regulator con 66.3 1.3E+02 0.0027 28.9 16.1 55 240-295 285-339 (361)
333 PF09477 Type_III_YscG: Bacter 65.3 67 0.0015 25.4 8.2 80 106-192 20-99 (116)
334 PF06552 TOM20_plant: Plant sp 63.7 1E+02 0.0023 27.1 11.3 26 145-172 98-123 (186)
335 KOG4077 Cytochrome c oxidase, 63.7 49 0.0011 27.0 7.3 61 392-453 67-127 (149)
336 KOG4648 Uncharacterized conser 63.4 22 0.00047 34.4 6.2 47 313-360 106-152 (536)
337 PF13174 TPR_6: Tetratricopept 63.3 12 0.00027 21.6 3.2 18 172-189 10-27 (33)
338 COG1747 Uncharacterized N-term 63.2 1.9E+02 0.0042 30.0 23.4 162 270-438 67-234 (711)
339 TIGR03504 FimV_Cterm FimV C-te 63.2 17 0.00038 23.4 3.9 20 170-189 7-26 (44)
340 PF13181 TPR_8: Tetratricopept 63.1 19 0.0004 21.1 4.1 27 376-402 3-29 (34)
341 COG2976 Uncharacterized protei 63.0 1.1E+02 0.0025 27.3 12.9 19 206-224 98-116 (207)
342 PF08311 Mad3_BUB1_I: Mad3/BUB 63.0 39 0.00084 27.9 7.1 59 26-86 66-124 (126)
343 PF02259 FAT: FAT domain; Int 62.9 1.6E+02 0.0036 29.1 24.1 64 269-332 146-212 (352)
344 PHA02875 ankyrin repeat protei 62.8 1.9E+02 0.004 29.7 14.1 12 172-183 75-86 (413)
345 PF07163 Pex26: Pex26 protein; 62.4 98 0.0021 29.4 10.1 87 311-397 90-181 (309)
346 KOG4648 Uncharacterized conser 61.8 51 0.0011 32.0 8.3 88 71-161 107-197 (536)
347 PF02284 COX5A: Cytochrome c o 61.2 78 0.0017 24.8 9.4 46 287-332 28-73 (108)
348 KOG2063 Vacuolar assembly/sort 61.1 2.9E+02 0.0063 31.3 16.9 117 129-247 506-639 (877)
349 PF07721 TPR_4: Tetratricopept 60.9 14 0.00029 20.5 2.8 17 346-362 8-24 (26)
350 TIGR03504 FimV_Cterm FimV C-te 60.5 20 0.00044 23.1 3.9 23 415-437 5-27 (44)
351 PF13181 TPR_8: Tetratricopept 59.4 27 0.00059 20.3 4.3 25 165-189 4-28 (34)
352 KOG4234 TPR repeat-containing 58.0 1.2E+02 0.0026 27.2 9.3 56 242-298 142-197 (271)
353 PF14561 TPR_20: Tetratricopep 58.0 52 0.0011 25.2 6.6 37 20-56 17-53 (90)
354 KOG2471 TPR repeat-containing 57.8 1.8E+02 0.0038 30.1 11.6 39 105-143 30-68 (696)
355 cd08819 CARD_MDA5_2 Caspase ac 57.2 77 0.0017 24.0 6.9 14 318-331 50-63 (88)
356 KOG1586 Protein required for f 57.0 1.6E+02 0.0035 27.2 20.0 91 385-477 165-265 (288)
357 KOG2297 Predicted translation 55.4 2E+02 0.0044 27.7 15.6 19 306-324 323-341 (412)
358 PF14853 Fis1_TPR_C: Fis1 C-te 55.3 60 0.0013 21.9 5.7 36 416-453 8-43 (53)
359 PF06552 TOM20_plant: Plant sp 55.2 1.5E+02 0.0032 26.2 10.0 43 390-440 96-138 (186)
360 PF11663 Toxin_YhaV: Toxin wit 54.5 13 0.00029 30.6 2.8 32 386-419 107-138 (140)
361 KOG4234 TPR repeat-containing 51.1 1.9E+02 0.0041 26.1 10.2 88 102-191 105-197 (271)
362 PF08424 NRDE-2: NRDE-2, neces 50.0 2.6E+02 0.0057 27.5 16.9 60 145-206 49-108 (321)
363 PF11207 DUF2989: Protein of u 49.7 2E+02 0.0043 26.0 14.8 73 144-217 123-198 (203)
364 PF11848 DUF3368: Domain of un 49.0 64 0.0014 21.2 5.0 27 388-414 16-42 (48)
365 KOG1464 COP9 signalosome, subu 48.6 2.4E+02 0.0052 26.6 17.2 43 406-450 301-343 (440)
366 PF10579 Rapsyn_N: Rapsyn N-te 48.5 68 0.0015 23.8 5.4 45 281-325 18-64 (80)
367 PF14853 Fis1_TPR_C: Fis1 C-te 47.4 87 0.0019 21.2 5.9 35 380-416 7-41 (53)
368 PF13929 mRNA_stabil: mRNA sta 47.4 2.7E+02 0.0058 26.8 22.0 57 232-288 200-257 (292)
369 PF09477 Type_III_YscG: Bacter 47.2 1.4E+02 0.0031 23.7 8.2 80 39-122 20-99 (116)
370 cd08819 CARD_MDA5_2 Caspase ac 46.8 98 0.0021 23.5 6.1 63 44-109 21-83 (88)
371 PF11848 DUF3368: Domain of un 46.7 81 0.0017 20.7 5.2 38 416-453 9-46 (48)
372 PF11663 Toxin_YhaV: Toxin wit 46.5 24 0.00051 29.2 3.1 31 139-171 107-137 (140)
373 PF07575 Nucleopor_Nup85: Nup8 46.1 1.5E+02 0.0032 32.1 10.1 32 317-348 508-539 (566)
374 KOG4077 Cytochrome c oxidase, 45.5 1.6E+02 0.0034 24.3 7.4 47 287-333 67-113 (149)
375 KOG2471 TPR repeat-containing 45.3 2.9E+02 0.0064 28.6 10.9 116 315-432 251-395 (696)
376 PF10579 Rapsyn_N: Rapsyn N-te 43.4 87 0.0019 23.3 5.3 19 129-147 45-63 (80)
377 PF11846 DUF3366: Domain of un 43.2 1.2E+02 0.0027 27.0 7.8 33 405-437 140-172 (193)
378 PRK13800 putative oxidoreducta 42.9 5.9E+02 0.013 29.5 28.5 255 82-367 625-880 (897)
379 PF02259 FAT: FAT domain; Int 42.6 3.5E+02 0.0075 26.7 26.1 65 338-402 145-212 (352)
380 PF10366 Vps39_1: Vacuolar sor 42.3 1.4E+02 0.003 23.8 7.0 27 271-297 41-67 (108)
381 cd00280 TRFH Telomeric Repeat 42.3 1.8E+02 0.0038 25.8 7.8 21 347-367 119-139 (200)
382 PF10255 Paf67: RNA polymerase 42.2 3.4E+02 0.0073 27.7 11.1 62 129-190 124-192 (404)
383 PF14689 SPOB_a: Sensor_kinase 41.4 73 0.0016 22.3 4.6 22 167-188 28-49 (62)
384 PRK10564 maltose regulon perip 40.5 63 0.0014 31.0 5.4 32 94-125 259-290 (303)
385 smart00028 TPR Tetratricopepti 39.9 63 0.0014 17.4 3.9 25 165-189 4-28 (34)
386 PF14689 SPOB_a: Sensor_kinase 39.8 72 0.0016 22.3 4.4 23 379-401 28-50 (62)
387 smart00777 Mad3_BUB1_I Mad3/BU 39.8 90 0.002 25.7 5.6 22 95-116 102-123 (125)
388 KOG3677 RNA polymerase I-assoc 39.5 4.2E+02 0.0092 26.9 11.0 63 199-261 237-299 (525)
389 PF04190 DUF410: Protein of un 39.0 3.5E+02 0.0075 25.7 16.3 82 125-225 88-169 (260)
390 COG2909 MalT ATP-dependent tra 38.9 6.2E+02 0.013 28.6 26.4 49 175-223 471-523 (894)
391 PF09868 DUF2095: Uncharacteri 38.4 1.3E+02 0.0028 24.1 5.8 35 133-168 67-101 (128)
392 PHA02875 ankyrin repeat protei 37.6 4.6E+02 0.01 26.7 16.0 38 138-179 10-49 (413)
393 KOG4507 Uncharacterized conser 37.6 2.2E+02 0.0048 30.2 8.9 132 251-385 590-721 (886)
394 TIGR03362 VI_chp_7 type VI sec 37.6 4E+02 0.0086 26.0 12.1 46 28-75 102-147 (301)
395 cd00280 TRFH Telomeric Repeat 37.2 2.5E+02 0.0053 25.0 7.9 22 311-332 118-139 (200)
396 COG5108 RPO41 Mitochondrial DN 37.1 2.8E+02 0.006 30.0 9.6 91 167-262 33-131 (1117)
397 KOG4507 Uncharacterized conser 37.1 1.2E+02 0.0026 32.0 7.0 85 140-225 620-704 (886)
398 COG5108 RPO41 Mitochondrial DN 36.0 3E+02 0.0065 29.7 9.7 75 309-386 33-115 (1117)
399 COG0735 Fur Fe2+/Zn2+ uptake r 35.7 2.4E+02 0.0052 23.9 7.8 40 117-157 11-50 (145)
400 PRK14700 recombination factor 34.9 4.3E+02 0.0093 25.6 10.0 36 283-318 140-175 (300)
401 PRK10564 maltose regulon perip 34.5 71 0.0015 30.7 4.7 36 377-412 260-295 (303)
402 PF11846 DUF3366: Domain of un 34.4 1.9E+02 0.0042 25.8 7.6 30 372-401 142-171 (193)
403 KOG0403 Neoplastic transformat 32.7 5.7E+02 0.012 26.3 16.2 78 307-389 512-589 (645)
404 PF08311 Mad3_BUB1_I: Mad3/BUB 32.4 2.8E+02 0.0062 22.8 9.8 43 110-152 81-124 (126)
405 PF09454 Vps23_core: Vps23 cor 32.3 86 0.0019 22.3 3.8 47 127-174 8-54 (65)
406 KOG2034 Vacuolar sorting prote 32.2 7.8E+02 0.017 27.8 27.7 78 28-115 361-438 (911)
407 KOG0403 Neoplastic transformat 32.1 5.8E+02 0.013 26.2 18.3 75 377-456 512-586 (645)
408 PF02757 YLP: YLP motif; Inte 31.8 22 0.00047 14.4 0.4 6 617-622 1-6 (9)
409 KOG2063 Vacuolar assembly/sort 31.8 8.2E+02 0.018 27.9 23.2 55 32-88 314-373 (877)
410 KOG2297 Predicted translation 31.6 4.9E+02 0.011 25.2 19.9 71 279-359 265-341 (412)
411 PF12862 Apc5: Anaphase-promot 31.3 2.4E+02 0.0052 21.6 6.7 22 133-154 47-68 (94)
412 KOG0686 COP9 signalosome, subu 31.3 5.7E+02 0.012 25.9 15.3 63 128-190 151-215 (466)
413 PF04910 Tcf25: Transcriptiona 31.2 5.6E+02 0.012 25.8 18.2 65 91-155 99-167 (360)
414 KOG0991 Replication factor C, 31.2 4.4E+02 0.0095 24.6 13.1 39 325-365 180-218 (333)
415 KOG3807 Predicted membrane pro 30.9 5.2E+02 0.011 25.3 11.8 153 37-202 196-351 (556)
416 PF02847 MA3: MA3 domain; Int 30.6 2.7E+02 0.0059 22.0 8.6 71 378-450 6-78 (113)
417 PRK10941 hypothetical protein; 30.1 5E+02 0.011 24.8 10.8 57 167-224 186-242 (269)
418 COG0735 Fur Fe2+/Zn2+ uptake r 29.7 3.5E+02 0.0076 22.9 8.1 63 396-464 8-71 (145)
419 PF10366 Vps39_1: Vacuolar sor 29.5 2.9E+02 0.0063 22.0 7.3 26 307-332 42-67 (108)
420 KOG0686 COP9 signalosome, subu 29.3 6.2E+02 0.013 25.7 14.1 170 270-467 151-329 (466)
421 COG5187 RPN7 26S proteasome re 29.2 5.2E+02 0.011 24.8 13.1 28 162-189 115-142 (412)
422 PF15297 CKAP2_C: Cytoskeleton 29.0 5.8E+02 0.013 25.3 9.9 64 390-455 119-186 (353)
423 PRK10941 hypothetical protein; 28.7 5.2E+02 0.011 24.7 11.1 60 238-298 185-244 (269)
424 PF12926 MOZART2: Mitotic-spin 28.2 2.7E+02 0.0058 21.1 8.1 42 113-154 29-70 (88)
425 PF12862 Apc5: Anaphase-promot 28.1 2.8E+02 0.006 21.3 6.8 23 168-190 47-69 (94)
426 PF05944 Phage_term_smal: Phag 27.9 2.8E+02 0.0061 23.1 6.7 37 20-58 45-81 (132)
427 COG4003 Uncharacterized protei 27.8 2.5E+02 0.0053 20.9 5.4 25 133-157 37-61 (98)
428 smart00638 LPD_N Lipoprotein N 27.4 8.1E+02 0.018 26.5 25.6 261 78-345 296-573 (574)
429 KOG4567 GTPase-activating prot 27.2 4.1E+02 0.0088 25.8 8.2 71 147-222 263-343 (370)
430 KOG2066 Vacuolar assembly/sort 27.1 9.1E+02 0.02 26.9 25.7 101 100-209 364-467 (846)
431 PF11817 Foie-gras_1: Foie gra 27.0 3.6E+02 0.0077 25.3 8.3 21 240-260 184-204 (247)
432 PF09454 Vps23_core: Vps23 cor 26.8 1.6E+02 0.0034 21.0 4.3 50 90-140 6-55 (65)
433 PF11817 Foie-gras_1: Foie gra 26.7 3.2E+02 0.0068 25.7 7.9 23 30-52 15-37 (247)
434 KOG0890 Protein kinase of the 26.3 1.5E+03 0.032 29.2 24.3 62 304-368 1670-1731(2382)
435 cd08332 CARD_CASP2 Caspase act 26.3 2.4E+02 0.0051 21.6 5.6 58 45-107 23-80 (90)
436 PRK09857 putative transposase; 26.0 5.8E+02 0.013 24.7 9.6 66 130-196 209-274 (292)
437 PF08424 NRDE-2: NRDE-2, neces 25.6 6.5E+02 0.014 24.7 18.7 62 251-314 48-109 (321)
438 KOG2422 Uncharacterized conser 25.5 8.5E+02 0.018 26.1 15.0 146 58-207 281-460 (665)
439 KOG2908 26S proteasome regulat 25.3 6.7E+02 0.015 24.8 10.6 91 340-430 76-178 (380)
440 cd07153 Fur_like Ferric uptake 25.1 2.1E+02 0.0047 22.8 5.7 34 390-423 16-49 (116)
441 smart00386 HAT HAT (Half-A-TPR 25.0 1.4E+02 0.0029 16.7 4.1 13 250-262 3-15 (33)
442 PF09868 DUF2095: Uncharacteri 24.9 2.8E+02 0.0061 22.2 5.7 40 97-137 66-105 (128)
443 KOG0687 26S proteasome regulat 24.6 6.8E+02 0.015 24.6 15.6 40 163-202 105-148 (393)
444 PRK13800 putative oxidoreducta 24.3 1.2E+03 0.025 27.1 32.7 154 267-437 726-880 (897)
445 KOG0890 Protein kinase of the 24.2 1.6E+03 0.035 28.9 25.8 150 97-258 1388-1542(2382)
446 PF04097 Nic96: Nup93/Nic96; 24.1 9.7E+02 0.021 26.2 19.0 215 129-368 114-356 (613)
447 KOG0991 Replication factor C, 23.8 6E+02 0.013 23.7 12.9 37 266-303 236-272 (333)
448 PRK08691 DNA polymerase III su 23.7 9.2E+02 0.02 26.8 11.3 47 285-333 180-227 (709)
449 COG5159 RPN6 26S proteasome re 23.6 6.7E+02 0.014 24.1 20.9 211 27-237 5-246 (421)
450 PF00244 14-3-3: 14-3-3 protei 23.2 6.1E+02 0.013 23.6 10.0 59 239-297 6-65 (236)
451 PF11838 ERAP1_C: ERAP1-like C 23.1 7E+02 0.015 24.2 19.2 190 99-294 45-262 (324)
452 PRK13342 recombination factor 23.1 8.3E+02 0.018 25.0 18.8 41 273-313 231-274 (413)
453 PRK11639 zinc uptake transcrip 23.0 4.2E+02 0.0092 23.1 7.4 59 119-178 18-76 (169)
454 PF09670 Cas_Cas02710: CRISPR- 22.9 8.1E+02 0.017 24.8 12.4 55 136-191 140-198 (379)
455 KOG4567 GTPase-activating prot 22.8 4.9E+02 0.011 25.3 7.9 44 324-367 263-306 (370)
456 cd08326 CARD_CASP9 Caspase act 22.5 3.5E+02 0.0075 20.4 6.4 61 45-110 19-79 (84)
457 smart00804 TAP_C C-terminal do 22.2 2E+02 0.0043 20.3 4.1 25 37-61 36-61 (63)
458 PF10255 Paf67: RNA polymerase 21.4 8.9E+02 0.019 24.8 12.6 64 198-261 123-191 (404)
459 PF11123 DNA_Packaging_2: DNA 21.3 2.9E+02 0.0064 20.1 4.7 30 250-280 13-42 (82)
460 PRK09857 putative transposase; 21.2 5.3E+02 0.011 25.0 8.3 16 391-406 257-272 (292)
461 PF01475 FUR: Ferric uptake re 20.9 2.1E+02 0.0046 23.1 4.9 37 414-450 12-49 (120)
462 PF11417 Inhibitor_G39P: Loade 20.7 2.7E+02 0.0058 20.3 4.6 37 24-60 28-64 (71)
463 PF09986 DUF2225: Uncharacteri 20.4 6.3E+02 0.014 23.1 8.2 53 391-443 142-199 (214)
464 PRK11639 zinc uptake transcrip 20.3 5.8E+02 0.013 22.2 8.2 37 388-424 39-75 (169)
465 PRK14958 DNA polymerase III su 20.3 1.1E+03 0.023 25.2 12.4 46 286-333 181-227 (509)
466 KOG1308 Hsp70-interacting prot 20.2 74 0.0016 31.1 2.2 48 106-154 128-175 (377)
467 PF03745 DUF309: Domain of unk 20.1 3.2E+02 0.0069 19.1 5.2 13 318-330 13-25 (62)
468 COG2178 Predicted RNA-binding 20.1 6.4E+02 0.014 22.7 10.4 18 420-437 132-149 (204)
469 KOG0376 Serine-threonine phosp 20.1 2E+02 0.0044 29.6 5.2 31 32-64 11-41 (476)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.4e-92 Score=773.35 Aligned_cols=594 Identities=77% Similarity=1.232 Sum_probs=576.7
Q ss_pred cCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 006981 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSV 101 (623)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~ 101 (623)
+.+.+.+...|+.+++.|++++|+++|++|.+.|+++++..++..++..|.+.|.+++|.++|+.|+.||..+||.++.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006981 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (623)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 181 (623)
|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 006981 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261 (623)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 261 (623)
.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.....++.||..+|++++.+|++.|++++|.++|+.|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987556789999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006981 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341 (623)
Q Consensus 262 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 341 (623)
+.++.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|+.|.+.|+.|+..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006981 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (623)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 421 (623)
|++||.+|+++|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcHHHHHHhhHhhhhccCCCccchhhhhHHHHHHHHHHHHcCCCCc
Q 006981 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPT 501 (623)
Q Consensus 422 ~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 501 (623)
.|++++|.++|++|.+.|+.||..+|++|+++|.++|++|+++.+....|+.+...+.+.|+.+|+.+|++|++.|+.||
T Consensus 767 ~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd 846 (1060)
T PLN03218 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT 846 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC
Confidence 99999999999999999999999999999999888899999999999999988888888999999999999999999999
Q ss_pred HHHHHHHHhccCCCCchhHHHhHHHhhCCChhhhhcccccccccccCCChhHHHHHHHHHHhCCCCCcccccCCceeecc
Q 006981 502 VEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDA 581 (623)
Q Consensus 502 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~A~~~~~~a~~~g~~p~~~~~~~~~~~~~ 581 (623)
..|+..+++|+....+...+..|.+.+++.|...+|..++++|+++|++.++|+.++++|.+.|+.|+..+....|++|+
T Consensus 847 ~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~~~~~~~~~d~ 926 (1060)
T PLN03218 847 MEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVSFKKSPIVIDA 926 (1060)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcccccCceEEEc
Confidence 99999999999888888888999999999999999999999999999887899999999999999999988777899999
Q ss_pred ccCcchHHHHHHHHHHHHHHHhhhcCccccceee
Q 006981 582 RKLEIHTAKVYLLTILKGLRHRLAAGNVVCIYFL 615 (623)
Q Consensus 582 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 615 (623)
+++++++|+|++++||+++++++++|+.+|+...
T Consensus 927 ~~~~~~aa~~~l~~wl~~~~~~~~~g~~lp~~~~ 960 (1060)
T PLN03218 927 EELPVFAAEVYLLTILKGLKHRLAAGAKLPNVTI 960 (1060)
T ss_pred ccCcchhHHHHHHHHHHHHHHHHhccCcCCccee
Confidence 9999999999999999999999999999997766
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.2e-69 Score=600.89 Aligned_cols=557 Identities=18% Similarity=0.290 Sum_probs=462.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCchH----------------------------------HHHHHHHHHhhhHH
Q 006981 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKV----------------------------------YHARFFNVCKSQKA 76 (623)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~----------------------------------~~~~l~~~~~~~~~ 76 (623)
....+++.|++++|.++|++|.+.|..+.... ....++..+.+.|+
T Consensus 57 ~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~ 136 (857)
T PLN03077 57 QLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGE 136 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCC
Confidence 34456689999999999999998775433222 12333445567788
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHH--------------------------
Q 006981 77 IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY-------------------------- 130 (623)
Q Consensus 77 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~-------------------------- 130 (623)
++.|.++|++|++||+++||++|.+|++.|++++|+++|++|...|+.||..||
T Consensus 137 ~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~ 216 (857)
T PLN03077 137 LVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF 216 (857)
T ss_pred hHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999998988887776
Q ss_pred ---------HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006981 131 ---------TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201 (623)
Q Consensus 131 ---------~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 201 (623)
++||.+|++.|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|...|+.||..||+
T Consensus 217 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~ 292 (857)
T PLN03077 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292 (857)
T ss_pred CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHH
Confidence 455666677777777777777776 5677888888888888888888888888888888888888888
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 006981 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (623)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 281 (623)
.++.+|++.|+.+.|.+++..|.+. |+.||..+|++|+.+|++.|++++|.++|+.|.. ||..+||++|.+|++
T Consensus 293 ~ll~a~~~~g~~~~a~~l~~~~~~~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~ 366 (857)
T PLN03077 293 SVISACELLGDERLGREMHGYVVKT--GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEK 366 (857)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHh--CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHh
Confidence 8888888888888888888888874 7889999999999999999999999999998864 566899999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006981 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361 (623)
Q Consensus 282 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 361 (623)
.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.+++..+.+.|+.|+..++++|+++|+++|++++|.++
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v 446 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006981 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441 (623)
Q Consensus 362 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~ 441 (623)
|++|. .+|..+||++|.+|++.|+.++|+++|++|.. ++.||..||+++|.+|++.|+++.+.+++..+.+.|+.
T Consensus 447 f~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~ 521 (857)
T PLN03077 447 FHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG 521 (857)
T ss_pred HHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC
Confidence 99997 47999999999999999999999999999986 59999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcHHHHHHhhHhhhhccCCCccchhhhhH------------HHHHHHHHHHHcCCCCcHHHHHHHH
Q 006981 442 PNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTS------------LALMVYREAIVAGTIPTVEVVSKVL 509 (623)
Q Consensus 442 p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~------------~a~~~~~~m~~~g~~p~~~~~~~~l 509 (623)
+|..++|+||++|+ ++|++.++...|+.+ ..+..+|+. +|+.+|++|++.|+.||..|+..++
T Consensus 522 ~~~~~~naLi~~y~----k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 596 (857)
T PLN03077 522 FDGFLPNALLDLYV----RCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596 (857)
T ss_pred ccceechHHHHHHH----HcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Confidence 99999999999955 456666666666666 566677775 4999999999999999999999876
Q ss_pred -hccCCC---CchhHHHhHHHhhCCChhhhhcccccccccccCCC--hhHHHHHHHHHHhCCCCCcccccCCceeecccc
Q 006981 510 -GCLQLP---YNADIRERLVENLGVSADALKRSNLCSLIDGFGEY--DPRAFSLLEEAASFGIVPCVSFKEIPVVVDARK 583 (623)
Q Consensus 510 -~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~--~~~A~~~~~~a~~~g~~p~~~~~~~~~~~~~~~ 583 (623)
+|++.+ ++.++++.|.+.+|+.|+..+|++ +++.+++. .++|.+++++| .+.|+..++.. .+.+++
T Consensus 597 ~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~---lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~a--Ll~ac~ 668 (857)
T PLN03077 597 CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC---VVDLLGRAGKLTEAYNFINKM---PITPDPAVWGA--LLNACR 668 (857)
T ss_pred HHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH---HHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHH--HHHHHH
Confidence 666654 345678888888999999999985 66655442 36888888887 25676544321 223444
Q ss_pred Ccch--HHHHHHHHHHHHHHHhhhcCccccceeeeccccc
Q 006981 584 LEIH--TAKVYLLTILKGLRHRLAAGNVVCIYFLVSDVYL 621 (623)
Q Consensus 584 ~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 621 (623)
.+.+ .++...... ..+++.+... |+++||+|.
T Consensus 669 ~~~~~e~~e~~a~~l-----~~l~p~~~~~-y~ll~n~ya 702 (857)
T PLN03077 669 IHRHVELGELAAQHI-----FELDPNSVGY-YILLCNLYA 702 (857)
T ss_pred HcCChHHHHHHHHHH-----HhhCCCCcch-HHHHHHHHH
Confidence 4433 233222222 2456755554 999999984
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-67 Score=589.60 Aligned_cols=545 Identities=19% Similarity=0.289 Sum_probs=437.9
Q ss_pred hhHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCchH----------------------------------HHHHHH
Q 006981 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKV----------------------------------YHARFF 68 (623)
Q Consensus 27 ~~~~~~~~l~----~~g~~~~A~~l~~~m~~~~~~~~~~~----------------------------------~~~~l~ 68 (623)
+++++||.++ +.|++++|+++|++|.+.|+.|.... +...++
T Consensus 150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 4667787776 89999999999999998887544222 233455
Q ss_pred HHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 006981 69 NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (623)
Q Consensus 69 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 148 (623)
..+.+.|++++|.++|++|+.+|.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~ 309 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Confidence 56677789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 006981 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228 (623)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 228 (623)
++..|.+.|+.||..+||+||.+|++.|++++|.++|++|. .||.++|+++|.+|++.|++++|.++|++|.+.
T Consensus 310 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~-- 383 (857)
T PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQD-- 383 (857)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh--
Confidence 99999999999999999999988888888888888888885 467778888888888888888888888888763
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----------
Q 006981 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK---------- 298 (623)
Q Consensus 229 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------- 298 (623)
++.||..||++++.+|++.|+++.|.++++.+.+.|+.++..+|++||.+|++.|++++|.++|++|.+.
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~ 463 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA 463 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 5677777777777777777777777777777776666666666666666666666666555555554332
Q ss_pred --------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006981 299 --------------------GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358 (623)
Q Consensus 299 --------------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 358 (623)
++.||..||++++.+|++.|.++.+.+++..+.+.|+.++..++|+|+++|+++|++++|
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A 543 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA 543 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHH
Confidence 356777777777777777777777777777777777777778888888888999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-H
Q 006981 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK-E 437 (623)
Q Consensus 359 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~-~ 437 (623)
.++|+.+ .||..+||+||.+|+++|+.++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++|+.|. +
T Consensus 544 ~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~ 618 (857)
T PLN03077 544 WNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618 (857)
T ss_pred HHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence 9998887 489999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCCCCCHHHHHHHHHHHHhcHHHHHHhhHhhhhccCCCccchhhhhHHHHHHHHHHHHcCCCCcHHHHHHHHhccCCCCc
Q 006981 438 DGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYN 517 (623)
Q Consensus 438 ~g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~l~~~~~~~~ 517 (623)
.|+.|+..+|++|+++|+| +|.+. +|.+++++| +++||..+|..+++.|+.+++
T Consensus 619 ~gi~P~~~~y~~lv~~l~r----~G~~~-------------------eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 619 YSITPNLKHYACVVDLLGR----AGKLT-------------------EAYNFINKM---PITPDPAVWGALLNACRIHRH 672 (857)
T ss_pred hCCCCchHHHHHHHHHHHh----CCCHH-------------------HHHHHHHHC---CCCCCHHHHHHHHHHHHHcCC
Confidence 7999999999999999766 33332 245556665 589999999999988888888
Q ss_pred hhHHHhHHH-hhCCChh-hhhcccccccccccCCChhHHHHHHHHHHhCCCCCc--ccccC----CceeeccccCcchHH
Q 006981 518 ADIRERLVE-NLGVSAD-ALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPC--VSFKE----IPVVVDARKLEIHTA 589 (623)
Q Consensus 518 ~~~~~~~~~-~~~~~~~-~~~~~~~~~~i~~~g~~~~~A~~~~~~a~~~g~~p~--~~~~~----~~~~~~~~~~~~~~~ 589 (623)
.++.+.+.+ .+.+.|+ +..|..+++++...|+|. +|.+++++|++.|+.++ .+++. .|.+....+.|+...
T Consensus 673 ~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~-~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~ 751 (857)
T PLN03077 673 VELGELAAQHIFELDPNSVGYYILLCNLYADAGKWD-EVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIK 751 (857)
T ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChH-HHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchH
Confidence 887776654 3467775 444554456777789985 57799999999999854 34332 244555677888888
Q ss_pred HHHHHHHHHHHHHhhhcCcccc
Q 006981 590 KVYLLTILKGLRHRLAAGNVVC 611 (623)
Q Consensus 590 ~~~~~~~l~~~~~~~~~~~~~~ 611 (623)
+++. .|..+..++..--..|
T Consensus 752 ~i~~--~l~~l~~~~~~~g~~~ 771 (857)
T PLN03077 752 EINT--VLEGFYEKMKASGLAG 771 (857)
T ss_pred HHHH--HHHHHHHHHHhCCcCC
Confidence 8886 7888877776544555
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.1e-63 Score=541.84 Aligned_cols=470 Identities=22% Similarity=0.361 Sum_probs=415.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHhhhCCC-----CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006981 64 HARFFNVCKSQKAIKEAFRFFKLVPN-----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138 (623)
Q Consensus 64 ~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 138 (623)
...++..+.+.|++++|+++|+.|+. ++..+++.++.+|.+.|..++|+.+|+.|.. ||..+|+.++.+|+
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~ 448 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCA 448 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHH
Confidence 33444555677999999999999864 5666778889999999999999999999873 99999999999999
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 006981 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218 (623)
Q Consensus 139 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 218 (623)
+.|+++.|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~ 528 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK--YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (623)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (623)
+|++|... ++.||..+|+.||.+|++.|++++|.++|++|.. .++.||..+|+++|.+|++.|++++|.++|++|.
T Consensus 529 lf~~M~~~--Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 529 AYGIMRSK--NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHc--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999874 7899999999999999999999999999999976 6789999999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 006981 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376 (623)
Q Consensus 297 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 376 (623)
+.|+.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|++++.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006981 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (623)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 456 (623)
|++||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred cHHHHHHhhHhhhhccCCCccchhhhhHHHHHHHHHHHHcCCCCcHHHHHHHHhccCCCCchhHHHhHHHhhCCChhhhh
Q 006981 457 RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALK 536 (623)
Q Consensus 457 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (623)
.+. ...|..+|++|++.|+.||..++..+++.|... -.+... +.+.. +..+.+
T Consensus 767 ----~G~-------------------le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~-y~ka~~-l~~~v-~~f~~g- 819 (1060)
T PLN03218 767 ----KDD-------------------ADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRR-FEKACA-LGEPV-VSFDSG- 819 (1060)
T ss_pred ----CCC-------------------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH-HHHHhh-hhhhh-hhhhcc-
Confidence 221 234778899999999999999999888755310 000000 00000 001111
Q ss_pred cccccccccccCCChhHHHHHHHHHHhCCCCCcccc
Q 006981 537 RSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSF 572 (623)
Q Consensus 537 ~~~~~~~i~~~g~~~~~A~~~~~~a~~~g~~p~~~~ 572 (623)
-......|...|..+|++|++.|+.|+..+
T Consensus 820 ------~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T 849 (1060)
T PLN03218 820 ------RPQIENKWTSWALMVYRETISAGTLPTMEV 849 (1060)
T ss_pred ------ccccccchHHHHHHHHHHHHHCCCCCCHHH
Confidence 011112366677777777777777776444
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.2e-63 Score=540.81 Aligned_cols=497 Identities=21% Similarity=0.313 Sum_probs=435.4
Q ss_pred hhhHHHHHHHHHhhhCC-----CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 006981 72 KSQKAIKEAFRFFKLVP-----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146 (623)
Q Consensus 72 ~~~~~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 146 (623)
.+.|++++|+++|+.|. .||..+|+.++.+|++.++.+.|.+++..|.+.|+.||..+|+.|+++|++.|++++|
T Consensus 98 ~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A 177 (697)
T PLN03081 98 VACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDA 177 (697)
T ss_pred HcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHH
Confidence 33444555555554442 4788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 006981 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (623)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (623)
.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|..+.+.+++..+.+.
T Consensus 178 ~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~ 253 (697)
T PLN03081 178 RRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKT 253 (697)
T ss_pred HHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 99999997 68999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 006981 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306 (623)
Q Consensus 227 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 306 (623)
++.||..++++|+++|++.|++++|.++|+.|.+ +|..+||+||.+|++.|++++|.++|++|.+.|+.||..|
T Consensus 254 --g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t 327 (697)
T PLN03081 254 --GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327 (697)
T ss_pred --CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 7899999999999999999999999999999964 4679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006981 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (623)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (623)
|++++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|+++|++++|.++|++|. .||..+||+||.+|++
T Consensus 328 ~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGN 403 (697)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999997 5899999999999999
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcHHHHHHhh
Q 006981 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMCSRRYEKARTLN 465 (623)
Q Consensus 387 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~g~~p~~~~~~~li~~~~~~~~~a~~~~ 465 (623)
+|+.++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+ .|+.|+..+|++||++|++ +|.+.
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r----~G~~~ 479 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR----EGLLD 479 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh----cCCHH
Confidence 999999999999999999999999999999999999999999999999985 6999999999999999766 33333
Q ss_pred HhhhhccCCCccchhhhhHHHHHHHHHHHHcCCCCcHHHHHHHHhccCCCCchhHHHhHHH-hhCCChh-hhhccccccc
Q 006981 466 EHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVE-NLGVSAD-ALKRSNLCSL 543 (623)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~ 543 (623)
+ |.++|++ .++.||..+|..++..|..+++.+..+.+.+ .+++.|+ ...|..++.+
T Consensus 480 e-------------------A~~~~~~---~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~ 537 (697)
T PLN03081 480 E-------------------AYAMIRR---APFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNL 537 (697)
T ss_pred H-------------------HHHHHHH---CCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHH
Confidence 3 3444443 3689999999999877776666666555443 4577775 5677766667
Q ss_pred ccccCCChhHHHHHHHHHHhCCCC--CcccccC----CceeeccccCcchHHHHHHHHHHHHHHHhhhcCcccc
Q 006981 544 IDGFGEYDPRAFSLLEEAASFGIV--PCVSFKE----IPVVVDARKLEIHTAKVYLLTILKGLRHRLAAGNVVC 611 (623)
Q Consensus 544 i~~~g~~~~~A~~~~~~a~~~g~~--p~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 611 (623)
+...|+| ++|.+++++|.+.|+. |..++.. .+.++.....|+...+++- .|..+..++...-..|
T Consensus 538 y~~~G~~-~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~--~l~~l~~~~~~~gy~~ 608 (697)
T PLN03081 538 YNSSGRQ-AEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQ--KLDELMKEISEYGYVA 608 (697)
T ss_pred HHhCCCH-HHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHH--HHHHHHHHHHHcCCCC
Confidence 7777887 5788999999999996 5544432 2445566677877777765 6777766666544444
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.3e-59 Score=510.48 Aligned_cols=416 Identities=19% Similarity=0.261 Sum_probs=354.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC----CCCHHHHHHHHHHHHcCCC
Q 006981 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKD 107 (623)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~ 107 (623)
...+.+.|++++|+++|+.|...+....+..++..++..|.+.++++.|.+++..+. .||..+||.++.+|++.|+
T Consensus 94 i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~ 173 (697)
T PLN03081 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGM 173 (697)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCC
Confidence 344457889999999999988766444566667777788888888888888887763 6788889999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (623)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (623)
++.|.++|++|. .||.++|++++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|..+.+.+++..
T Consensus 174 ~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~ 249 (697)
T PLN03081 174 LIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCC 249 (697)
T ss_pred HHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHH
Confidence 999999888885 4788889999999999999999999999998888888888999999998888888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 006981 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (623)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 267 (623)
+.+.|+.||..+|++||.+|++.|++++|.++|++|. .+|.++|++++.+|++.|++++|.++|++|.+.|+.|
T Consensus 250 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 250 VLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 8888888888889999999999999999999988885 3688889999999999999999999999888888888
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006981 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (623)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (623)
|..+|++++.+|++.|++++|.+++..|.+.|+.||..+++++|.+|++.|++++|.++|++|.+ ||..+||++|.
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~ 399 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIA 399 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHH
Confidence 88899999999999999999999999988888888888899999999999999999998888853 67888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHH
Q 006981 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDDVE 426 (623)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~ 426 (623)
+|++.|+.++|.++|++|.+.|+.||..||++++.+|++.|.+++|.++|++|.+ .|+.|+..+|+.+++++++.|+++
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 9999999999999999988888889999999999999999999999999988875 588888888999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cHHHHHHh
Q 006981 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL 464 (623)
Q Consensus 427 ~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~ 464 (623)
+|.+++++| ++.|+..+|++|+.+|.. +++.|...
T Consensus 480 eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~ 516 (697)
T PLN03081 480 EAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLA 516 (697)
T ss_pred HHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 888887654 578888889999888765 44444443
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=3.1e-26 Score=261.47 Aligned_cols=517 Identities=16% Similarity=0.082 Sum_probs=345.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCh
Q 006981 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (623)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~ 108 (623)
...+.+.|++++|.+.++.+.+.+ +.+......++..+...|++++|.++|+++. +.+...+..+...+...|++
T Consensus 336 a~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 413 (899)
T TIGR02917 336 ASIQLRLGRVDEAIATLSPALGLD--PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDP 413 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCh
Confidence 344446666666666666666554 3444444555555666666777777766543 33455666666666667777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (623)
++|.+.++.+.+.. +........++..+.+.|++++|.++++.+.... +++..+|..+...|...|++++|.+.|+++
T Consensus 414 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 491 (899)
T TIGR02917 414 SEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKA 491 (899)
T ss_pred HHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 77777777666553 2233445556667777777777777777776543 446677777888888888888888888877
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 006981 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268 (623)
Q Consensus 189 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 268 (623)
.+.. +.+...+..+...+...|++++|.+.++++.... +.+..++..+...+.+.|+.++|..+++++.+.+ +.+
T Consensus 492 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 566 (899)
T TIGR02917 492 LSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID---PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQE 566 (899)
T ss_pred HhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccc
Confidence 7653 3345566677777778888888888888776532 3456677777788888888888888888877765 556
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (623)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 348 (623)
...+..++..|.+.|++++|..+++.+..... .+...|..+...+...|++++|...++.+.+.. +.+...+..+..+
T Consensus 567 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 644 (899)
T TIGR02917 567 IEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADA 644 (899)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 67777888888888888888888888876543 366778888888888888888888888887764 3456677888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006981 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428 (623)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 428 (623)
|.+.|++++|...|+++.+.. +.+..+|..++..+...|++++|.++++.+.+.+ +++...+..+...+.+.|++++|
T Consensus 645 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A 722 (899)
T TIGR02917 645 YAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAA 722 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHH
Confidence 888888888888888887654 3457788888888888888888888888887764 45667777788888888889998
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh--cHHHHHHhhHhhhhccCCCccc---------hhhhhHHHHHHHHHHHHcC
Q 006981 429 LMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQI---------ENKWTSLALMVYREAIVAG 497 (623)
Q Consensus 429 ~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~m~~~g 497 (623)
.+.++++.+.+ |+..++..+..++.+ ++++|.+..+......+..... ..+-...|...|+++++.
T Consensus 723 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~- 799 (899)
T TIGR02917 723 IQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK- 799 (899)
T ss_pred HHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh-
Confidence 88888888753 444555556666554 5666665554433222221100 011123478888888765
Q ss_pred CCCcHHHHHHHHh--ccCCCCchhHHHhHHHhhCCChhhh-hcccccccccccCCChhHHHHHHHHHHhCCCCCc
Q 006981 498 TIPTVEVVSKVLG--CLQLPYNADIRERLVENLGVSADAL-KRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPC 569 (623)
Q Consensus 498 ~~p~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~g~~~~~A~~~~~~a~~~g~~p~ 569 (623)
.|+.......++ +...+. .+....+.+.+.+.|+.. ....++.+....|+ .++|...+++|++ ..|+
T Consensus 800 -~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~a~~--~~~~ 869 (899)
T TIGR02917 800 -APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE-ADRALPLLRKAVN--IAPE 869 (899)
T ss_pred -CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHh--hCCC
Confidence 355443332222 222333 445555566666666433 22222333344565 3678899999987 4454
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=5.9e-26 Score=259.19 Aligned_cols=513 Identities=13% Similarity=0.059 Sum_probs=408.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcC
Q 006981 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASS 105 (623)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 105 (623)
......+.+.|++++|.+.|+++.+.+ |.+...+..++..+...|+.++|.+.|+.+. +.+...+..++..+.+.
T Consensus 367 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 444 (899)
T TIGR02917 367 SLLGEAYLALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRS 444 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhc
Confidence 334455568999999999999998876 5666667777777888899999999998764 33455677788889999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (623)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (623)
|++++|..+++.+.... +.+..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|
T Consensus 445 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 522 (899)
T TIGR02917 445 GQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRF 522 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999998754 6678899999999999999999999999998764 446778888999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 006981 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265 (623)
Q Consensus 186 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 265 (623)
+++...+ +.+..++..+...+.+.|+.++|..++.++.... +.+...+..++..|.+.|++++|..+++.+.+..
T Consensus 523 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 597 (899)
T TIGR02917 523 EKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN---PQEIEPALALAQYYLGKGQLKKALAILNEAADAA- 597 (899)
T ss_pred HHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-
Confidence 9998764 4577888999999999999999999999987642 4456678889999999999999999999998765
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006981 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345 (623)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 345 (623)
+.+..+|..+...|.+.|++++|...|+++.+... .+...+..+...+.+.|++++|..+++.+.+.. +.+..++..+
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 675 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGL 675 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 66788999999999999999999999999987653 266778889999999999999999999998764 4567889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006981 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425 (623)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 425 (623)
...+...|++++|.++++.+.+.. +.+...+..+...+.+.|++++|.+.|+++... .|+..++..+..++.+.|++
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCH
Confidence 999999999999999999998775 457778888999999999999999999999885 46667888899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cHHHHHHhhHhhhhccCCCccchhhhh-----------HHHHHHHHH
Q 006981 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWT-----------SLALMVYRE 492 (623)
Q Consensus 426 ~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~-----------~~a~~~~~~ 492 (623)
++|.+.++++.+.. ..+...+..+...|.+ ++++|....+......+. +...+. ..|+..+++
T Consensus 753 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~A~~~~~~ 828 (899)
T TIGR02917 753 AEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD---NAVVLNNLAWLYLELKDPRALEYAEK 828 (899)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 99999999988753 3456677777777664 677777776655433332 222222 247788887
Q ss_pred HHHcCCCCcHHHHHHHHhc--cCCCCchhHHHhHHHhhCCCh-hhhhcccccccccccCCChhHHHHHHHHHH
Q 006981 493 AIVAGTIPTVEVVSKVLGC--LQLPYNADIRERLVENLGVSA-DALKRSNLCSLIDGFGEYDPRAFSLLEEAA 562 (623)
Q Consensus 493 m~~~g~~p~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~g~~~~~A~~~~~~a~ 562 (623)
.+. ..|+...+...++. ...++-.+....+.+.+...| ++..+.+++..+...|+ .++|..++++++
T Consensus 829 ~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~ 898 (899)
T TIGR02917 829 ALK--LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGR-KAEARKELDKLL 898 (899)
T ss_pred HHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHh
Confidence 776 35665544433333 334444555556666666656 45555554445555676 467888988875
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1e-20 Score=193.77 Aligned_cols=299 Identities=13% Similarity=0.109 Sum_probs=149.7
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCC
Q 006981 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDGCAKAGQ 177 (623)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~ 177 (623)
.+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445566777777777776653 33455666666666677777777777766665421111 2345666666666666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC---HHHHHHHHHHHHHcCChHHHH
Q 006981 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANAGQVDRAR 254 (623)
Q Consensus 178 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~ 254 (623)
+++|..+|+++.+.. +++..+++.++..+.+.|++++|.+.+..+.... +..+. ...+..+...+.+.|++++|.
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG-GDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 666666666666542 3345566666666666666666666666665431 10111 112233444455555555555
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006981 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (623)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (623)
..|+++.+.. +.+...+..+...|.+.|++++|.++|+++...+......++..++.+|.+.|++++|...++.+.+..
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5555555433 223344445555555555555555555555443221112334444444444444444444444444332
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc---CCChhhHHHHHHHHHHCCCCC
Q 006981 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD---GDQLPKTMEVLSDMKSLGLCP 407 (623)
Q Consensus 335 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p 407 (623)
|+...+..+...+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.++++.++++|.+.++.|
T Consensus 280 --p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 280 --PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred --CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 22233344444444444444444444444332 2444444444433332 224444444444444433333
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=6.4e-20 Score=187.92 Aligned_cols=303 Identities=17% Similarity=0.110 Sum_probs=253.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcc
Q 006981 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD---RVVFNALITACGQS 210 (623)
Q Consensus 134 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~ 210 (623)
...+...|++++|...|.++.+.+ +.+..++..+...+.+.|++++|..+++.+...+..++ ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 445678899999999999999874 34567899999999999999999999999987542222 25678889999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHH
Q 006981 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT----PEVYTIAINCCSQTGDWE 286 (623)
Q Consensus 211 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~ 286 (623)
|++++|..+|.++.+. .+.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|+++
T Consensus 121 g~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 121 GLLDRAEELFLQLVDE---GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred CCHHHHHHHHHHHHcC---CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999864 245677899999999999999999999999988653322 224567788889999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (623)
Q Consensus 287 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (623)
+|...|+++.+.... +...+..+...+.+.|++++|.++++++.+.+......+++.+..+|.+.|++++|...++++.
T Consensus 198 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999876432 4567788889999999999999999999876533335678899999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCC
Q 006981 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER---KDDVEVGLMLLSQAKEDGVIPN 443 (623)
Q Consensus 367 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~---~g~~~~a~~~~~~~~~~g~~p~ 443 (623)
+. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..++++|.+.++.|+
T Consensus 277 ~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 277 EE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred Hh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 76 466667788999999999999999999998875 7999999988887765 5689999999999998777766
Q ss_pred HH
Q 006981 444 LV 445 (623)
Q Consensus 444 ~~ 445 (623)
+.
T Consensus 353 p~ 354 (389)
T PRK11788 353 PR 354 (389)
T ss_pred CC
Confidence 65
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=4.9e-17 Score=186.98 Aligned_cols=373 Identities=16% Similarity=0.129 Sum_probs=220.4
Q ss_pred ccCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHH----------------HHHHHHHhhhHHHHHHHHHh
Q 006981 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYH----------------ARFFNVCKSQKAIKEAFRFF 84 (623)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~A~~~~ 84 (623)
.|+++.........+.+.|+.++|.+.++++.+.. |.+..+. ...++.+...|++++|.+.|
T Consensus 58 ~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~ 135 (1157)
T PRK11447 58 DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASY 135 (1157)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHH
Confidence 45566666666666778889999999888888877 3333321 12233455668888888888
Q ss_pred hhCC---CCCHH-HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--
Q 006981 85 KLVP---NPTLS-TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-- 158 (623)
Q Consensus 85 ~~~~---~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-- 158 (623)
++.. +++.. ............|+.++|+..++++.+.. +.+...+..+...+...|+.++|++.++++.....
T Consensus 136 ~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~ 214 (1157)
T PRK11447 136 DKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGR 214 (1157)
T ss_pred HHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCch
Confidence 8764 22321 11111222234588888888888888764 45667777888888888888888888887754310
Q ss_pred ----------------C--------------CCHHHH---------------------HHHHHHHHhcCCHHHHHHHHHH
Q 006981 159 ----------------E--------------PNVHTY---------------------GALIDGCAKAGQVAKAFGAYGI 187 (623)
Q Consensus 159 ----------------~--------------~~~~~~---------------------~~li~~~~~~g~~~~A~~~~~~ 187 (623)
. |+.... ......+...|++++|+..|++
T Consensus 215 ~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~ 294 (1157)
T PRK11447 215 DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQ 294 (1157)
T ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 0 000000 0112345667888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHH------------HHHHHHHHHcCChHHHHH
Q 006981 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI------------GALMKACANAGQVDRARE 255 (623)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~------------~~ll~~~~~~g~~~~A~~ 255 (623)
..+.. +.+...+..+..++.+.|++++|...|++..+.... .+....+ ......+.+.|++++|..
T Consensus 295 aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~-~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~ 372 (1157)
T PRK11447 295 AVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH-SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAER 372 (1157)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 87763 336777888888888888888888888887764211 1111111 122345677888888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006981 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (623)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (623)
.|+++.+.. +.+...+..+...+...|++++|++.|++..+.... +...+..+...+. .++.++|..+++.+.....
T Consensus 373 ~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~ 449 (1157)
T PRK11447 373 LYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQR 449 (1157)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHH
Confidence 888888775 556677778888888888888888888888775432 3334444433332 2334444444333211100
Q ss_pred --------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 006981 336 --------SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (623)
Q Consensus 336 --------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (623)
......+..+...+...|++++|.+.|++..+... .+...+..+...|.+.|++++|...++++.+
T Consensus 450 ~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~ 523 (1157)
T PRK11447 450 RSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQ 523 (1157)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00011122333344444555555555554444321 1233344444445555555555555554443
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.88 E-value=6.5e-18 Score=194.17 Aligned_cols=389 Identities=11% Similarity=0.039 Sum_probs=289.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCC---HHHHHH----------
Q 006981 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPT---LSTFNM---------- 97 (623)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~---~~~~~~---------- 97 (623)
..++..|++++|+..|++..+.+ |.+...+..++..+...|++++|+..|++.. .|+ ...|..
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 34557899999999999988877 6677777778888888889999999988754 222 112221
Q ss_pred --HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006981 98 --LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (623)
Q Consensus 98 --li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (623)
....+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|++..+.. +.+...+..+...|. .
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-h
Confidence 2345678899999999999988874 4566777888889999999999999999988764 335666777777764 4
Q ss_pred CCHHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc
Q 006981 176 GQVAKAFGAYGIMRSKNVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (623)
Q Consensus 176 g~~~~A~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~ 247 (623)
++.++|+..++.+...... .....+..+...+...|++++|.+.|++..+.. +.+...+..+...|.+.
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~---P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD---PGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHc
Confidence 6788888888765432100 011234456677788899999999999987642 23456677788889999
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHhcC
Q 006981 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV---------FLSALIDFAGHAG 318 (623)
Q Consensus 248 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~---------~~~~li~~~~~~g 318 (623)
|++++|...++++.+.. +.+...+..+...+.+.++.++|+..++.+......++.. .+......+...|
T Consensus 509 G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 99999999999988765 4556666666667778899999999888765432222221 1234456778889
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHH
Q 006981 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (623)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 398 (623)
+.++|..+++. .+.+...+..+...+.+.|++++|...|++..+.. +.+...+..++..|...|++++|++.++
T Consensus 588 ~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 588 KEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred CHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999988872 24566677888889999999999999999988764 3467888899999999999999999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 399 DMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (623)
Q Consensus 399 ~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (623)
...+. .| +..++..+..++...|++++|.++++++.+.
T Consensus 662 ~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 662 KLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 87764 44 4555667778888999999999999998864
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=1.2e-18 Score=170.16 Aligned_cols=419 Identities=13% Similarity=0.108 Sum_probs=319.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhh---CCCCCHHHHHHHHHHHHcC
Q 006981 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMSVCASS 105 (623)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~ 105 (623)
+.....+.+.|++.+|.+--...-.++ |.+.....++...+.+..+.+.....-.. ..+.-..+|..+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 344566678999999988777666666 33333333333334444444443332221 2244567899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHH
Q 006981 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY-GALIDGCAKAGQVAKAFGA 184 (623)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~ 184 (623)
|++++|+.+++.+.+.. +.....|..+..++...|+.+.|.+.|.+..+. .|+.... +.+.......|+.++|...
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 99999999999999874 445778999999999999999999999998876 5665443 3455555668999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 006981 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKY 263 (623)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 263 (623)
|.+..+.. +-=.+.|+.|...+-..|+...|++.|++...- .|+ ...|-.|...|...+.++.|...+.+....
T Consensus 207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl----dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL----DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC----CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 98888762 223578888988899999999999999998753 444 447888899999999999999999888776
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006981 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343 (623)
Q Consensus 264 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 343 (623)
. +....++..|...|...|..+.|+..+++.++.... =...|+.+..++-..|++.+|.+.+....... +-.....+
T Consensus 282 r-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~ 358 (966)
T KOG4626|consen 282 R-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMN 358 (966)
T ss_pred C-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHH
Confidence 4 445677888888899999999999999998876432 24678999999999999999999999988764 33467788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 006981 344 SLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACER 421 (623)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~ 421 (623)
.|...|...|.+++|..+|....+. .|. ....+.|...|-+.|++++|+..+++.++ +.|+ ...|+.+-..|-.
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHH
Confidence 8999999999999999999988764 344 45688899999999999999999999887 6787 5578888899999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcHHHHHHhhHhhhh
Q 006981 422 KDDVEVGLMLLSQAKEDGVIPNLVM-FKCIIGMCSRRYEKARTLNEHVLS 470 (623)
Q Consensus 422 ~g~~~~a~~~~~~~~~~g~~p~~~~-~~~li~~~~~~~~~a~~~~~~~~~ 470 (623)
.|+++.|.+.+.+.+. +.|...- .+-|-.. |+++|.+.+++.+
T Consensus 435 ~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi----~kDsGni~~AI~s 478 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQ--INPTFAEAHSNLASI----YKDSGNIPEAIQS 478 (966)
T ss_pred hhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHH----hhccCCcHHHHHH
Confidence 9999999999988887 5565432 3334333 6667766665443
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=7.3e-17 Score=173.55 Aligned_cols=329 Identities=12% Similarity=0.050 Sum_probs=183.1
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006981 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (623)
Q Consensus 97 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (623)
.++..+.+.|++++|+.+++...... +-+...+..++.+....|++++|.+.|+++.+.. +.+...+..+...+.+.|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 34455556666666666666665543 2223334444455555666666666666666543 234455566666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 006981 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256 (623)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 256 (623)
++++|...+++..+.. +.+...+..+...+...|+.++|...+..+.... +.+...+..+ ..+.+.|++++|...
T Consensus 125 ~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~---P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 125 QYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV---PPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC---CCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 6666666666665542 2234455556666666666666666666554321 1112222222 235556666666666
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHH
Q 006981 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA----AFEILQEAKN 332 (623)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~ 332 (623)
++.+.+....++...+..+...+.+.|++++|...+++....... +...+..+...+...|++++ |...++...+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 666555432233333444455566666666666666666655322 44555556666666666654 5666666655
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHH-
Q 006981 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT- 411 (623)
Q Consensus 333 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t- 411 (623)
.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+...|.+.|++++|+..|+++.+. .|+...
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~ 354 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKW 354 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHH
Confidence 43 2345566666666666666666666666666543 223445555666666666666666666666653 344322
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 412 YSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 412 ~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
+..+..++...|+.++|...|++..+
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22334456666666666666666655
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=2.8e-18 Score=167.52 Aligned_cols=392 Identities=15% Similarity=0.155 Sum_probs=325.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChH
Q 006981 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (623)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~ 109 (623)
+...+..+++...+--....+.. +........++..++..|++++|+.+++.+. +..+..|..+..++...|+.+
T Consensus 90 ai~~q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~ 167 (966)
T KOG4626|consen 90 AIFFQGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLE 167 (966)
T ss_pred hhhhcccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCc
Confidence 33445556666655555555554 6777788889999999999999999999764 456789999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 110 GAFQVLRLVQEAGLKADCKL-YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-VHTYGALIDGCAKAGQVAKAFGAYGI 187 (623)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (623)
.|.+.|....+. .|+... .+.+...+...|++++|..-|.+.++. .|. .+.|+.|.-.+-..|+...|++-|++
T Consensus 168 ~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~e 243 (966)
T KOG4626|consen 168 LAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEE 243 (966)
T ss_pred ccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHH
Confidence 999999999875 566544 344555566689999999999888876 343 56899999999999999999999999
Q ss_pred HHhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 006981 188 MRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNI 265 (623)
Q Consensus 188 m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 265 (623)
..+. .|+ ...|..|...|...+.++.|...+.+.... .|+ .+++..+...|-..|.++.|+..+++..+..
T Consensus 244 Avkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l----rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~- 316 (966)
T KOG4626|consen 244 AVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL----RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ- 316 (966)
T ss_pred hhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc----CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-
Confidence 9876 444 567888999999999999999999988753 454 5677888888999999999999999999875
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006981 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345 (623)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 345 (623)
+.-+..|+.|..++-..|+..+|.+.+.+.+..... -....+.|...|...|.+++|..+|....+.. +--....+.|
T Consensus 317 P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNL 394 (966)
T KOG4626|consen 317 PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNL 394 (966)
T ss_pred CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhH
Confidence 455789999999999999999999999999886432 44677889999999999999999999888753 2235678899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 006981 346 MGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKD 423 (623)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g 423 (623)
...|-+.|++++|...+++..+. .|+ ...|+.+...|-..|+.+.|++.+.+.+. +.|. ...++.|.+.+..+|
T Consensus 395 a~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsG 470 (966)
T KOG4626|consen 395 ASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSG 470 (966)
T ss_pred HHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccC
Confidence 99999999999999999998874 566 46899999999999999999999999887 4675 567889999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH
Q 006981 424 DVEVGLMLLSQAKEDGVIPNLV 445 (623)
Q Consensus 424 ~~~~a~~~~~~~~~~g~~p~~~ 445 (623)
++.+|++-+++.++ ++||..
T Consensus 471 ni~~AI~sY~~aLk--lkPDfp 490 (966)
T KOG4626|consen 471 NIPEAIQSYRTALK--LKPDFP 490 (966)
T ss_pred CcHHHHHHHHHHHc--cCCCCc
Confidence 99999999999988 566643
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=5.3e-17 Score=174.62 Aligned_cols=321 Identities=9% Similarity=0.009 Sum_probs=155.5
Q ss_pred HhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 006981 71 CKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147 (623)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 147 (623)
+.+.|++++|..+++... +.+...+..++......|++++|...++.+.+.. +.+...+..+...+...|++++|.
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai 130 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVA 130 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHH
Confidence 334455555555554432 2233333444444444555555555555555543 333445555555555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 006981 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (623)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 227 (623)
..+++..+.. +.+...+..+...+...|++++|...++.+..... .+...+..+ ..+...|++++|...++.+....
T Consensus 131 ~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~ 207 (656)
T PRK15174 131 DLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFF 207 (656)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcC
Confidence 5555555432 22344555555555555555555555555543321 112222222 22445555555555555544321
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCC
Q 006981 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF----ACSVYDDMTKKGVIPD 303 (623)
Q Consensus 228 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~~~~p~ 303 (623)
+ .++......+...+.+.|++++|...++.+.+.+ +.+...+..+...|.+.|++++ |...|++..+.... +
T Consensus 208 -~-~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~ 283 (656)
T PRK15174 208 -A-LERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-N 283 (656)
T ss_pred -C-CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-C
Confidence 0 1122223333444555555555555555555543 3344555555555555555553 45555555544322 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHH
Q 006981 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALIT 382 (623)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~ 382 (623)
...+..+...+.+.|++++|...+++..+.. +.+...+..+..+|.+.|++++|...|+++.+.. |+. ..+..+..
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~ 360 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAA 360 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHH
Confidence 4455555555555555555555555555443 2233444455555555555555555555555432 222 22222344
Q ss_pred HHHcCCChhhHHHHHHHHHH
Q 006981 383 ALCDGDQLPKTMEVLSDMKS 402 (623)
Q Consensus 383 ~~~~~g~~~~A~~l~~~m~~ 402 (623)
++...|+.++|.+.|++..+
T Consensus 361 al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 45555555555555555544
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=1.9e-16 Score=170.92 Aligned_cols=388 Identities=12% Similarity=0.054 Sum_probs=248.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChH
Q 006981 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (623)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~ 109 (623)
+.+.+.|++++|+..|++..+.. | +..++..++..+...|++++|+..++... +.+...|..+..++...|+++
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~~--p-~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIECK--P-DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--C-chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 44557888888888888888765 3 34556666777777788888888887653 446667888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH---------------------
Q 006981 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL--------------------- 168 (623)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l--------------------- 168 (623)
+|+.-|......+ ..+......++..+... .+........+.. +++...+..+
T Consensus 212 eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~~----~a~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 212 DALLDLTASCIID-GFRNEQSAQAVERLLKK----FAESKAKEILETK-PENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HHHHHHHHHHHhC-CCccHHHHHHHHHHHHH----HHHHHHHHHHhcC-CCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 8888877665543 22222222222211111 1111111111110 0110000000
Q ss_pred ---------HHHH------HhcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 006981 169 ---------IDGC------AKAGQVAKAFGAYGIMRSKN-VKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231 (623)
Q Consensus 169 ---------i~~~------~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 231 (623)
+..+ ...+++++|.+.|++....+ ..| ....|+.+...+...|++++|...+++.... .
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l----~ 361 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL----D 361 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C
Confidence 0000 12356778888888777654 222 3455666777777788888888888877653 3
Q ss_pred CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006981 232 PD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310 (623)
Q Consensus 232 ~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 310 (623)
|+ ...|..+...+...|++++|...|+.+.+.+ +.+..+|..+...+...|++++|...|++..+.... +...+..+
T Consensus 362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~l 439 (615)
T TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQL 439 (615)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHH
Confidence 43 4466777777778888888888888877765 556777888888888888888888888887776432 45566667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHH
Q 006981 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV------STMNALITAL 384 (623)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~ 384 (623)
...+.+.|++++|+..++...+.. +.+...++.+...+...|++++|...|++..+.....+. ..++.....+
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 777778888888888888777653 345677777788888888888888888877654321111 1112222233
Q ss_pred HcCCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 385 CDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (623)
Q Consensus 385 ~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (623)
...|++++|.+++++.... .| +...+..+...+.+.|++++|...|++..+.
T Consensus 519 ~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3467888888888887664 34 3446777778888888888888888877653
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=1.8e-16 Score=174.32 Aligned_cols=403 Identities=10% Similarity=0.007 Sum_probs=304.3
Q ss_pred hHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhC---CCCCHHHHHHHHHHHH
Q 006981 28 QLHSYNRL-IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCA 103 (623)
Q Consensus 28 ~~~~~~~l-~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~ 103 (623)
.+.-|..+ ...|+.++|++++.+..... +.....+..++..+...|++++|..+|++. .+.+...+..+...+.
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~ 94 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 33445444 48999999999999998744 456666777888888999999999999984 4566778888889999
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006981 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (623)
Q Consensus 104 ~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (623)
..|++++|+..++.+.+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...+..+.|+.
T Consensus 95 ~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHH
Confidence 9999999999999999874 55666 8889999999999999999999999874 3466677778888899999999999
Q ss_pred HHHHHHhCCCCCCH------HHHHHHHHHHH-----ccCCH---HHHHHHHHHHhhCCCCCCCCHH-HH----HHHHHHH
Q 006981 184 AYGIMRSKNVKPDR------VVFNALITACG-----QSGAV---DRAFDVLAEMNAEVHPVDPDHI-TI----GALMKAC 244 (623)
Q Consensus 184 ~~~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~~~~~~~~~~-~~----~~ll~~~ 244 (623)
.++.... .|+. .....++.... ..+++ ++|++.++.+.... ...|+.. .+ ...+..+
T Consensus 172 ~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~-~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 172 AIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALW-HDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhc-ccCCccchHHHHHHHHHHHHH
Confidence 9987664 2221 11222232222 22234 77888888887531 1223221 11 1113345
Q ss_pred HHcCChHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCH
Q 006981 245 ANAGQVDRAREVYKMIHKYNIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALIDFAGHAGKV 320 (623)
Q Consensus 245 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p---~~~~~~~li~~~~~~g~~ 320 (623)
...|++++|+..|+.+.+.+.+ |+ ..-..+...|...|++++|+.+|+++....... .......+..++.+.|++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 6779999999999999887632 22 223335778999999999999999988654221 134456667788999999
Q ss_pred HHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006981 321 EAAFEILQEAKNQGI-----------SVG---IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (623)
Q Consensus 321 ~~a~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (623)
++|..+++.+.+... .|+ ...+..+...+...|++++|.++++++.... +.+...+..+...+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 999999999987531 123 2345667788999999999999999998764 4567889999999999
Q ss_pred CCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006981 387 GDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (623)
Q Consensus 387 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~ 445 (623)
.|++++|++.+++..+. .|+ ...+......+...|++++|..+++++++. .|+..
T Consensus 406 ~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~ 461 (765)
T PRK10049 406 RGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDP 461 (765)
T ss_pred cCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCH
Confidence 99999999999999884 575 556667777889999999999999999973 45544
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=3.2e-16 Score=169.26 Aligned_cols=358 Identities=9% Similarity=-0.053 Sum_probs=262.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCh
Q 006981 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (623)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~ 108 (623)
..++.+.|++++|++.++...+.+ |.....+..++..+...|++++|+..|.... +.+......++..+..
T Consensus 167 a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~---- 240 (615)
T TIGR00990 167 AACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK---- 240 (615)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----
Confidence 345568899999999999999887 6777777778888899999999998886542 2222222222221111
Q ss_pred HHHHHHHHHHHHcCCCCC---HH------------------------------HHHHHHHH---HHHcCChhHHHHHHHH
Q 006981 109 EGAFQVLRLVQEAGLKAD---CK------------------------------LYTTLITT---CAKSGKVDAMFEVFHE 152 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~---~~------------------------------~~~~li~~---~~~~g~~~~A~~~~~~ 152 (623)
..+........+.. +++ .. .+..+... ....+++++|.+.|+.
T Consensus 241 ~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~ 319 (615)
T TIGR00990 241 KFAESKAKEILETK-PENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEK 319 (615)
T ss_pred HHHHHHHHHHHhcC-CCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 11111111111111 110 00 00001000 0123678999999999
Q ss_pred HHHCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC
Q 006981 153 MVNAG-I-EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230 (623)
Q Consensus 153 m~~~g-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 230 (623)
..+.+ . +.+...|+.+...+...|++++|+..|++..... +.+...|..+...+...|++++|...|++.....
T Consensus 320 al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--- 395 (615)
T TIGR00990 320 ALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN--- 395 (615)
T ss_pred HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---
Confidence 98764 2 2345678888899999999999999999998763 2336688888899999999999999999987642
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006981 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310 (623)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 310 (623)
+.+..++..+...+...|++++|...|++..+.+ +.+...+..+...+.+.|++++|+..|++..+.... +...+..+
T Consensus 396 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~l 473 (615)
T TIGR00990 396 SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYY 473 (615)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHH
Confidence 3456788889999999999999999999999876 567788889999999999999999999999876432 56788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006981 311 IDFAGHAGKVEAAFEILQEAKNQGISVGI------ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384 (623)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 384 (623)
...+...|++++|...|+...+.....+. ..++.....+...|++++|.+++++..+.. +.+...+..+...+
T Consensus 474 g~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~ 552 (615)
T TIGR00990 474 GELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLL 552 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 99999999999999999998876422111 112223334455799999999999987764 23456788999999
Q ss_pred HcCCChhhHHHHHHHHHHC
Q 006981 385 CDGDQLPKTMEVLSDMKSL 403 (623)
Q Consensus 385 ~~~g~~~~A~~l~~~m~~~ 403 (623)
.+.|++++|++.|++..+.
T Consensus 553 ~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 553 LQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHccCHHHHHHHHHHHHHH
Confidence 9999999999999998764
No 20
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=1.2e-15 Score=143.20 Aligned_cols=410 Identities=16% Similarity=0.178 Sum_probs=290.9
Q ss_pred ccCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHh---hh-----------------------
Q 006981 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK---SQ----------------------- 74 (623)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~---~~----------------------- 74 (623)
.|..+. .-...-.+|.+|.+.++.-+|+.|...|+. -...+...++++.. +.
T Consensus 112 ~~~~V~-~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~-vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~s 189 (625)
T KOG4422|consen 112 DPLQVE-TENNLLKMISSREVKDSCILYERMRSENVD-VSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSS 189 (625)
T ss_pred Cchhhc-chhHHHHHHhhcccchhHHHHHHHHhcCCC-CCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccc
Confidence 344444 333445677899999999999999999863 22222222222210 00
Q ss_pred -HHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 006981 75 -KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153 (623)
Q Consensus 75 -~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 153 (623)
++-+-|- ++-+..+.+..+|..+|.++|+-...+.|.+++++......+.+..+||.+|.+-.-.. ..++..+|
T Consensus 190 WK~G~vAd-L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EM 264 (625)
T KOG4422|consen 190 WKSGAVAD-LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEM 264 (625)
T ss_pred cccccHHH-HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHH
Confidence 0112233 55556677888999999999999999999999999988877999999999998754432 37899999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHhhC--
Q 006981 154 VNAGIEPNVHTYGALIDGCAKAGQVAK----AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR-AFDVLAEMNAE-- 226 (623)
Q Consensus 154 ~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~-- 226 (623)
....+.||..|+|+++++.++.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++...
T Consensus 265 isqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~lt 344 (625)
T KOG4422|consen 265 ISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLT 344 (625)
T ss_pred HHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhc
Confidence 999999999999999999999998765 56788899999999999999999999999887644 44455544331
Q ss_pred CCCCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 227 VHPVD----PDHITIGALMKACANAGQVDRAREVYKMIHKYN----IKGT---PEVYTIAINCCSQTGDWEFACSVYDDM 295 (623)
Q Consensus 227 ~~~~~----~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m 295 (623)
+..++ .|..-|...++.|.+..+.+.|.++........ +.|+ ..-|..+....|+....+.-...++.|
T Consensus 345 GK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l 424 (625)
T KOG4422|consen 345 GKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL 424 (625)
T ss_pred cCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12222 245667788899999999999999988775432 2222 223667888889999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-C--------HH-----HHHHH
Q 006981 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-N--------WQ-----KALEL 361 (623)
Q Consensus 296 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~--------~~-----~A~~~ 361 (623)
.-.-.-|+..+...++.+..-.|.++-.-+++..++..|..-+.....-++..+++.. + +. -|..+
T Consensus 425 VP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~ 504 (625)
T KOG4422|consen 425 VPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADI 504 (625)
T ss_pred ccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 9887888999999999999999999999999999888775544444444444444433 1 00 11112
Q ss_pred HH-------HHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006981 362 YE-------HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG----LCPNTITYSILLVACERKDDVEVGLM 430 (623)
Q Consensus 362 ~~-------~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~ll~a~~~~g~~~~a~~ 430 (623)
++ +|.+. .......+.....+.+.|+.++|.++|....+++ ..|......-++++..+..+...|..
T Consensus 505 ~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~ 582 (625)
T KOG4422|consen 505 KEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIE 582 (625)
T ss_pred HHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHH
Confidence 21 12222 2344556666677778888888888887775543 22334444456666677777777777
Q ss_pred HHHHHHHCC
Q 006981 431 LLSQAKEDG 439 (623)
Q Consensus 431 ~~~~~~~~g 439 (623)
+++.|...+
T Consensus 583 ~lQ~a~~~n 591 (625)
T KOG4422|consen 583 VLQLASAFN 591 (625)
T ss_pred HHHHHHHcC
Confidence 777776544
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=2e-14 Score=155.04 Aligned_cols=443 Identities=13% Similarity=0.105 Sum_probs=305.9
Q ss_pred CccCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch-HHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHH-HHH
Q 006981 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST-FNM 97 (623)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~ 97 (623)
.+|..+...-...-...+.|+++.|++.|++..+.+ |.+. .++ -++.++...|+.++|+.++++...|+... +..
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~l 105 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGL 105 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHH
Confidence 344444433333333449999999999999999988 4442 223 45555666699999999999987654333 333
Q ss_pred H--HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006981 98 L--MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (623)
Q Consensus 98 l--i~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (623)
+ ...+...|++++|+++++.+.+.. +-+...+..++..+...++.++|++.++++... .|+...+..++..+...
T Consensus 106 lalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~ 182 (822)
T PRK14574 106 ASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhc
Confidence 3 557888899999999999999886 555777888899999999999999999999876 56666665555555556
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHH------HHHHHHH-----
Q 006981 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI------GALMKAC----- 244 (623)
Q Consensus 176 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~------~~ll~~~----- 244 (623)
++..+|++.++++.+.. +-+...+..+..+..+.|-...|.++..+-.. -+.+....+ ..+++.-
T Consensus 183 ~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~---~f~~~~~~~l~~~~~a~~vr~a~~~~~ 258 (822)
T PRK14574 183 DRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPN---LVSAEHYRQLERDAAAEQVRMAVLPTR 258 (822)
T ss_pred chHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc---ccCHHHHHHHHHHHHHHHHhhcccccc
Confidence 67767999999999884 44677778888999999999999888765332 112221111 1111100
Q ss_pred HHcCC---hHHHHHHHHHHHhc--CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006981 245 ANAGQ---VDRAREVYKMIHKY--NIKGTPEVY----TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (623)
Q Consensus 245 ~~~g~---~~~A~~~~~~~~~~--~~~~~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 315 (623)
....+ .+.|+.-++.+... ..++....| --.+-++...|++.++++.|+.|...+......+-.++.++|.
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 01122 34445555555442 223332222 2345667788999999999999998876544457888999999
Q ss_pred hcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------------CCCCHH-H
Q 006981 316 HAGKVEAAFEILQEAKNQG-----ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-------------LKPTVS-T 376 (623)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------------~~~~~~-~ 376 (623)
..+++++|..++..+.... ..++......|.-+|...+++++|..+++.+.+.. ..||-. .
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 9999999999999986643 23345556788889999999999999999988732 123332 3
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH
Q 006981 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV-MFKCIIGMCS 455 (623)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~-~~~~li~~~~ 455 (623)
+..++..+...|+..+|.+.++++.... +-|......+.+.+...|.+.+|++.++.... +.|+.. +.........
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al 495 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAM 495 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHH
Confidence 3445677888999999999999997752 33788888888999999999999999977665 355533 2223332222
Q ss_pred --hcHHHHHHhhHhhhhccCCC
Q 006981 456 --RRYEKARTLNEHVLSFNSGR 475 (623)
Q Consensus 456 --~~~~~a~~~~~~~~~~~~~~ 475 (623)
+.+.+|..+.+......+..
T Consensus 496 ~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 496 ALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred hhhhHHHHHHHHHHHHhhCCCc
Confidence 25777777776665544443
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=6.1e-15 Score=162.23 Aligned_cols=389 Identities=13% Similarity=0.081 Sum_probs=283.4
Q ss_pred HHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 006981 68 FNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144 (623)
Q Consensus 68 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 144 (623)
..+..-.|+.++|+++|.+.. +.+...+..+...+...|++++|.++++...+.. +.+...+..+...+...|+++
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence 344556688999999998754 3456679999999999999999999999998764 556777888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 006981 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (623)
Q Consensus 145 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (623)
+|...+++..+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...+..++|++.++...
T Consensus 101 eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 101 EALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 9999999998873 44566 8889999999999999999999999874 3355566677888888999999999998765
Q ss_pred hCCCCCCCCH------HHHHHHHHHHH-----HcCCh---HHHHHHHHHHHhc-CCCCCH-HHH----HHHHHHHHhcCC
Q 006981 225 AEVHPVDPDH------ITIGALMKACA-----NAGQV---DRAREVYKMIHKY-NIKGTP-EVY----TIAINCCSQTGD 284 (623)
Q Consensus 225 ~~~~~~~~~~------~~~~~ll~~~~-----~~g~~---~~A~~~~~~~~~~-~~~~~~-~~~----~~li~~~~~~g~ 284 (623)
. .|+. .....++.... ..+++ ++|+..++.+.+. ...|+. ..+ ...+..+...|+
T Consensus 178 ~-----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~ 252 (765)
T PRK10049 178 L-----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDR 252 (765)
T ss_pred C-----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhh
Confidence 3 2331 11222222222 12234 7788888888754 112221 111 111344567799
Q ss_pred HHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHH
Q 006981 285 WEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV---GIISYSSLMGACSNAKNWQKALE 360 (623)
Q Consensus 285 ~~~A~~l~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 360 (623)
+++|+..|+.+.+.+.. |+. ....+..+|...|++++|+..|+.+.+..... .......+..++.+.|++++|..
T Consensus 253 ~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~ 331 (765)
T PRK10049 253 YKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALT 331 (765)
T ss_pred HHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 99999999999987642 433 22235678999999999999999987654211 13456667778899999999999
Q ss_pred HHHHHHhCCC-----------CCC---HHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006981 361 LYEHMKSIKL-----------KPT---VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426 (623)
Q Consensus 361 ~~~~m~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 426 (623)
+++.+.+... .|+ ...+..+...+...|+.++|+++++++.... +-+...+..+...+...|+++
T Consensus 332 ~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~ 410 (765)
T PRK10049 332 VTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPR 410 (765)
T ss_pred HHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHH
Confidence 9999986531 123 2345667788999999999999999998752 336777888889999999999
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHH--hcHHHHHHhhHhhh
Q 006981 427 VGLMLLSQAKEDGVIPNLV-MFKCIIGMCS--RRYEKARTLNEHVL 469 (623)
Q Consensus 427 ~a~~~~~~~~~~g~~p~~~-~~~~li~~~~--~~~~~a~~~~~~~~ 469 (623)
+|++.+++..+ +.|+.. .+..+...+. +++++|....+...
T Consensus 411 ~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 411 AAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred HHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999987 446542 2222222222 26677666655544
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.78 E-value=1.8e-13 Score=150.95 Aligned_cols=505 Identities=11% Similarity=0.001 Sum_probs=271.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC--CC-CHHHHHHHHHHHHcCCChHHHHH
Q 006981 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NP-TLSTFNMLMSVCASSKDSEGAFQ 113 (623)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~ 113 (623)
..|++++|++.|+...+.+ |.+..++..+.+++...|+.++|+..+++.. .| |...+..+ ..+ +++.+|..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i---~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL-AAI---PVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh---ccChhHHH
Confidence 4477777777777777666 5556666666666666677777777666543 22 23333322 111 55556666
Q ss_pred HHHHHHHcC--------------------------------------CCCCHHHHHHH-HHHHHHcCChhHHHHHHHHHH
Q 006981 114 VLRLVQEAG--------------------------------------LKADCKLYTTL-ITTCAKSGKVDAMFEVFHEMV 154 (623)
Q Consensus 114 ~~~~m~~~g--------------------------------------~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~ 154 (623)
+++++.+.. ..|+..+.... ...|.+.|++++|++++.++.
T Consensus 130 ~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 130 TVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 666555442 11122222222 455555666666666666666
Q ss_pred HCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC
Q 006981 155 NAGIEPNVHTYGALIDGCAK-AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233 (623)
Q Consensus 155 ~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 233 (623)
+.+ +.+..-...|..+|.. .++ +.+..+++. .++-+...+..+...+.+.|+.++|.+++.++...... .|+
T Consensus 210 k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~-~~~ 282 (987)
T PRK09782 210 QQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTT-DAQ 282 (987)
T ss_pred hcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccC-CCc
Confidence 554 2233334444455555 244 555555332 12346666777888888889888888888876542111 111
Q ss_pred HHH------------------------------HHHHHHHHHHcCChHHHHHHH--------------------------
Q 006981 234 HIT------------------------------IGALMKACANAGQVDRAREVY-------------------------- 257 (623)
Q Consensus 234 ~~~------------------------------~~~ll~~~~~~g~~~~A~~~~-------------------------- 257 (623)
..+ .-.++..+.+.++++.+.++.
T Consensus 283 ~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 362 (987)
T PRK09782 283 EKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEAL 362 (987)
T ss_pred cHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHH
Confidence 111 111234444555544444432
Q ss_pred ---HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC---HHHHHH----
Q 006981 258 ---KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIPDEVFLSALIDFAGHAGK---VEAAFE---- 325 (623)
Q Consensus 258 ---~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~~p~~~~~~~li~~~~~~g~---~~~a~~---- 325 (623)
..+.+. .+.+......+.-...+.|+.++|.++|+..... ...++.....-++..|.+.+. ..++..
T Consensus 363 ~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 441 (987)
T PRK09782 363 RLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKP 441 (987)
T ss_pred HHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccc
Confidence 222222 1445555555555566778888888888776652 122233344455666655544 222211
Q ss_pred ------------------HHHHHHHC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006981 326 ------------------ILQEAKNQ-GI-SV--GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383 (623)
Q Consensus 326 ------------------~~~~~~~~-~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 383 (623)
........ +. ++ +...+..+..++.. ++.++|...+.+.... .|+......+...
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~a 518 (987)
T PRK09782 442 LPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQ 518 (987)
T ss_pred cccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHH
Confidence 12222221 11 23 55666666666665 6777777766665543 3554333333444
Q ss_pred HHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH--hcHHH
Q 006981 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV-MFKCIIGMCS--RRYEK 460 (623)
Q Consensus 384 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~-~~~~li~~~~--~~~~~ 460 (623)
+.+.|++++|...|+++... .|+...+..+..++.+.|+.++|...+++..+.. |+.. .+..+...+. +++++
T Consensus 519 l~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHH
Confidence 45777788888777776543 4454555566667777788888887777777643 3332 2222222221 25666
Q ss_pred HHHhhHhhhhccCCCccchhhhh------------HHHHHHHHHHHHcCCCCcHHHHHHHHhccC--CCCchhHHHhHHH
Q 006981 461 ARTLNEHVLSFNSGRPQIENKWT------------SLALMVYREAIVAGTIPTVEVVSKVLGCLQ--LPYNADIRERLVE 526 (623)
Q Consensus 461 a~~~~~~~~~~~~~~~~~~~~~~------------~~a~~~~~~m~~~g~~p~~~~~~~~l~~~~--~~~~~~~~~~~~~ 526 (623)
|....+.....++. ...|. ..|...|++.++ ..|+.......+|... .+...+....+.+
T Consensus 595 Al~~~~~AL~l~P~----~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 595 ALNDLTRSLNIAPS----ANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHHHHHHHHHhCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66665544433331 12222 236666666554 5687776665555332 3444555556666
Q ss_pred hhCCChh-hhhcccccccccccCCChhHHHHHHHHHHhCCCCCccc
Q 006981 527 NLGVSAD-ALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVS 571 (623)
Q Consensus 527 ~~~~~~~-~~~~~~~~~~i~~~g~~~~~A~~~~~~a~~~g~~p~~~ 571 (623)
.+.+.|+ +....++.......|+ .++|...++++.+ +.|+..
T Consensus 669 AL~l~P~~~~a~~nLA~al~~lGd-~~eA~~~l~~Al~--l~P~~a 711 (987)
T PRK09782 669 AHKGLPDDPALIRQLAYVNQRLDD-MAATQHYARLVID--DIDNQA 711 (987)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHh--cCCCCc
Confidence 6666774 3333344445555675 4678888888887 667543
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.76 E-value=6.5e-13 Score=146.55 Aligned_cols=475 Identities=9% Similarity=0.011 Sum_probs=248.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCchHHHHHHHHH--------HhhhHHHHHHHHHhhhCC-CCCHHHHHHH-HHHHHcCCCh
Q 006981 39 GRISECIDLLEDMERKGLLDMDKVYHARFFNV--------CKSQKAIKEAFRFFKLVP-NPTLSTFNML-MSVCASSKDS 108 (623)
Q Consensus 39 g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~-~~~~~~~~~l-i~~~~~~~~~ 108 (623)
+++.+|.++++++.+.. |.+..+...+... +.+.++..+|+. .+... .|+..+.... .+.|.+.+++
T Consensus 122 ~~~~kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw 198 (987)
T PRK09782 122 PVEVKSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQW 198 (987)
T ss_pred ccChhHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCH
Confidence 44444444444444444 3333333333333 344444455555 22222 2234434444 7889999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAK-SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (623)
++|+.++..+.+.+ +.+..-...|..+|.. .++ +.+..+++.. +..+...+..+...|.+.|+.++|.+++++
T Consensus 199 ~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~ 272 (987)
T PRK09782 199 SQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIE 272 (987)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 99999999999987 5556667778888888 477 8888886542 246888999999999999999999999998
Q ss_pred HHhCCCC-CCHHHHHHH------------------------------HHHHHccCCHHHHHHHHH---------------
Q 006981 188 MRSKNVK-PDRVVFNAL------------------------------ITACGQSGAVDRAFDVLA--------------- 221 (623)
Q Consensus 188 m~~~g~~-p~~~~~~~l------------------------------i~~~~~~g~~~~A~~~~~--------------- 221 (623)
+...-.. |+..+|.-+ +.-+.+.++++.+.++..
T Consensus 273 ~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 352 (987)
T PRK09782 273 NKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVS 352 (987)
T ss_pred CcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhc
Confidence 7643211 333332211 222334444444433321
Q ss_pred --------------HHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCC-
Q 006981 222 --------------EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY--NIKGTPEVYTIAINCCSQTGD- 284 (623)
Q Consensus 222 --------------~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~- 284 (623)
.|.+. .+-+....--+.-...+.|+.++|.++|+..... +...+....+-++..|...+.
T Consensus 353 ~~~~~~~~~~~~~~~~y~~---~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 429 (987)
T PRK09782 353 VATRNKAEALRLARLLYQQ---EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYL 429 (987)
T ss_pred cccCchhHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcc
Confidence 11110 0112222222223345667777777777666542 112233444455555555443
Q ss_pred --HHHH----------------------HHHHHHHHhC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006981 285 --WEFA----------------------CSVYDDMTKK-GV-IP--DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336 (623)
Q Consensus 285 --~~~A----------------------~~l~~~m~~~-~~-~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 336 (623)
..++ .......... +. .+ +...|..+..++.. ++.++|...+.+.....
T Consensus 430 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~-- 506 (987)
T PRK09782 430 ATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ-- 506 (987)
T ss_pred cchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--
Confidence 1122 1112222221 11 12 34444545544444 56666666555555442
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416 (623)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 416 (623)
|+......+...+.+.|++++|...|+++... .|+...+..+...+.+.|+.++|...+++..+.. +++...+..+.
T Consensus 507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La 583 (987)
T PRK09782 507 PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLH 583 (987)
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHH
Confidence 33333333333345666666666666665443 2333445555556666666666666666666542 11222232333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cHHHHHHhhHhhhhccCCCccc---------hhhhhHH
Q 006981 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQI---------ENKWTSL 485 (623)
Q Consensus 417 ~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~---------~~~~~~~ 485 (623)
..+...|++++|...+++.++ ..|+...+..+..++.+ ++++|....+.....++..+.. ..+....
T Consensus 584 ~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 584 AQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 334445666666666666665 34555555555444443 4555555444433333322210 0112234
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHhccC--CCCchhHHHhHHHhhCCChhhh
Q 006981 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQ--LPYNADIRERLVENLGVSADAL 535 (623)
Q Consensus 486 a~~~~~~m~~~g~~p~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~ 535 (623)
|+..|++.++ ..|+...+..-+|.+. .+.-.+....+.+.+.+.|+..
T Consensus 662 Ai~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 662 SREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQA 711 (987)
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc
Confidence 6666666655 4677665544444333 3444455556666776777543
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.70 E-value=2.7e-12 Score=138.79 Aligned_cols=416 Identities=10% Similarity=0.057 Sum_probs=287.5
Q ss_pred HHHhhhHHHHHHHHHhhhCC--CCCH-HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 006981 69 NVCKSQKAIKEAFRFFKLVP--NPTL-STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145 (623)
Q Consensus 69 ~~~~~~~~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 145 (623)
-...+.|+++.|+..|++.. .|+. .....++..+...|+.++|+..+++..... +........+...+...|++++
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 34556788999999999876 3332 123388888889999999999999988221 2334444445678889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 006981 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (623)
Q Consensus 146 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (623)
|+++|+++.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++..
T Consensus 121 Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 121 ALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 999999999875 345677788889999999999999999999876 56666664454445456666679999999987
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHH------HHHHHHH-----HhcCCH---HHHHHH
Q 006981 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY------TIAINCC-----SQTGDW---EFACSV 291 (623)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------~~li~~~-----~~~g~~---~~A~~l 291 (623)
.. +.+...+..+..+..+.|-...|.++.+.-++.= .+....+ ..++..- ...+++ +.|+.-
T Consensus 198 ~~---P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 198 LA---PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred hC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 52 3356677888899999999999988776544221 1111111 1111100 112333 344555
Q ss_pred HHHHHhC-CCCCCH-HH-HH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 292 YDDMTKK-GVIPDE-VF-LS---ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (623)
Q Consensus 292 ~~~m~~~-~~~p~~-~~-~~---~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (623)
++.+... +..|.. .. .. -.+-++...|++.++++.++.+...+.+....+-..+.++|...+..++|..+++++
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 5555542 222322 11 12 233467788999999999999999887766778899999999999999999999998
Q ss_pred HhCC-----CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCC-------------CCCCHHH-HHHHHHHHHhcCCHH
Q 006981 366 KSIK-----LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-------------LCPNTIT-YSILLVACERKDDVE 426 (623)
Q Consensus 366 ~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------~~p~~~t-~~~ll~a~~~~g~~~ 426 (623)
.... ..++......|.-+|...+++++|..+++++.+.- ..||-.. +..++..+...|++.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~ 433 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP 433 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH
Confidence 6643 12344556789999999999999999999998731 1233333 444567788999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cHHHHHHhhHhhhhccCCCcc--chhhhhHHHHHHHHHH
Q 006981 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQ--IENKWTSLALMVYREA 493 (623)
Q Consensus 427 ~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~~~m 493 (623)
+|++.++.+.... .-|......+-+.+.. ...+|....+......+.... ...+++.+++.=|+++
T Consensus 434 ~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 434 TAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHH
Confidence 9999999998642 2355555566665553 688888888766655554221 2234444444444443
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.68 E-value=2.4e-12 Score=133.31 Aligned_cols=427 Identities=13% Similarity=0.077 Sum_probs=253.4
Q ss_pred ccCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CchHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHH--H
Q 006981 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLD-MDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLST--F 95 (623)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~--~ 95 (623)
+++++..-....|.+.-.|++..+..+.+.+....... .-..-+..+++.+-..|++++|..+|-+.. .++.++ +
T Consensus 266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~ 345 (1018)
T KOG2002|consen 266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPL 345 (1018)
T ss_pred cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccc
Confidence 45666777777788888999999999999888765211 112225566777888899999999997654 333333 4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (623)
Q Consensus 96 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (623)
--+...+...|+++.+...|+...+.. +.+..+...|...|+..+ ..+.|..+..+..+.- +.|...|-.+...
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql 423 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQL 423 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHH
Confidence 446788999999999999999998864 555677777777777775 4566777777766653 4567788777777
Q ss_pred HHhcCCHHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC-CCCCCH------HHHHHH
Q 006981 172 CAKAGQVAKAFGAYGIM----RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDH------ITIGAL 240 (623)
Q Consensus 172 ~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~------~~~~~l 240 (623)
+-.. +...++..|... ...+-++.+...|.+...+...|++++|...|......-. ...+|. .+--.+
T Consensus 424 ~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 424 LEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 6654 444446666544 3455567788889999889999999999999888765300 112222 122334
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006981 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320 (623)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 320 (623)
...+-..++.+.|.+.|..+.+.. +.-+..|--+..+-...+...+|...+.+....+-. +...++.+...+.....+
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~-np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS-NPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC-CcHHHHHHHHHHHhhhhh
Confidence 445555667777777777776653 222333433433333345556666666665543221 333333333344444445
Q ss_pred HHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 006981 321 EAAFEILQEAKNQG-ISVGIISYSSLMGACSN------------AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387 (623)
Q Consensus 321 ~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 387 (623)
..|.+-|..+.+.- ..+|..+.-+|.+.|.+ .+..++|+++|.+..+.. +.|...-|.+...++..
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEK 659 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhc
Confidence 55555444433321 12344444444443332 233455555555555443 23455555555555666
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 006981 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMC 454 (623)
Q Consensus 388 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~g~~p~~~~~~~li~~~ 454 (623)
|++.+|..+|.+..+... -+..+|..+...|...|++-.|++.|+...+ ..-.-+..+.++|-.++
T Consensus 660 g~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~ 726 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAW 726 (1018)
T ss_pred cCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 666666666666555421 2333455555556666666666666655443 23333444444444443
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=1.3e-11 Score=116.47 Aligned_cols=314 Identities=21% Similarity=0.264 Sum_probs=235.1
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--ChhHH-HHHHHHHHHCC----------
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG--KVDAM-FEVFHEMVNAG---------- 157 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A-~~~~~~m~~~g---------- 157 (623)
.+++=|.|+.. ..+|.+..+.-+++.|...|++.+...-..|+..-+-.+ ++--| .+.|-.|...|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 34566666665 446889999999999999998888777666665433222 11111 12222222211
Q ss_pred ---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 006981 158 ---------IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228 (623)
Q Consensus 158 ---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 228 (623)
.+.+..++.+||.+.|+-...+.|.+++++-.....+.+..+||.+|.+-.-.. ..+++.+|...
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisq-- 267 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQ-- 267 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHh--
Confidence 245778999999999999999999999999998878899999999998765433 36788889875
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHH----HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh----CC
Q 006981 229 PVDPDHITIGALMKACANAGQVDRA----REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF-ACSVYDDMTK----KG 299 (623)
Q Consensus 229 ~~~~~~~~~~~ll~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~----~~ 299 (623)
.+.||..|+|+++++.++.|+++.| .+++.+|.+.|+.|...+|..+|..+++.++..+ |..++.++.. +.
T Consensus 268 km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~ 347 (625)
T KOG4422|consen 268 KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKT 347 (625)
T ss_pred hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCc
Confidence 6899999999999999999987654 5677899999999999999999999998887744 5555555543 22
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 300 VIP----DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG----ISVG---IISYSSLMGACSNAKNWQKALELYEHMKSI 368 (623)
Q Consensus 300 ~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (623)
++| |...|.+.++.|.+..+.+.|.++..-+.... +.|+ ..-|..+....++....+.-...++.|.-.
T Consensus 348 fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~ 427 (625)
T KOG4422|consen 348 FKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS 427 (625)
T ss_pred ccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 332 55678889999999999999999988765431 2233 234667778888888899999999999866
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHH
Q 006981 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411 (623)
Q Consensus 369 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 411 (623)
-.-|+..+...++++....|.++-.-+++.+++..|..-+...
T Consensus 428 ~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l 470 (625)
T KOG4422|consen 428 AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL 470 (625)
T ss_pred eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH
Confidence 6667888888888888888888888888888887664333333
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.66 E-value=4.4e-12 Score=131.42 Aligned_cols=404 Identities=13% Similarity=0.111 Sum_probs=305.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCc-hHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCC----Ch
Q 006981 37 RQGRISECIDLLEDMERKGLLDMD-KVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSK----DS 108 (623)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~----~~ 108 (623)
..|+++.|...|.+..+.+ +.+ ..-+.-+++.+...|+++.|...|+.+. +.+..+...+...|+..+ ..
T Consensus 319 a~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~ 396 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKR 396 (1018)
T ss_pred hhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHH
Confidence 6899999999999988876 444 4445567778888999999999999864 456667777777777765 45
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006981 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV----NAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (623)
+.|..++....+.- +.|...|..+...+-... ...++.+|.... ..+-.+-....|.+...+...|++++|...
T Consensus 397 d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~ 474 (1018)
T KOG2002|consen 397 DKASNVLGKVLEQT-PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEH 474 (1018)
T ss_pred HHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHH
Confidence 67777777776654 567788888887775554 444476665543 455567788899999999999999999999
Q ss_pred HHHHHhC---CCCCCH------HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHH-HHHHHHHHHHHcCChHHHH
Q 006981 185 YGIMRSK---NVKPDR------VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI-TIGALMKACANAGQVDRAR 254 (623)
Q Consensus 185 ~~~m~~~---g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~ 254 (623)
|...... -..+|. .+--.+.+..-..++.+.|.+.|..+... .|.-+ .|--+..+....+...+|.
T Consensus 475 f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke----hp~YId~ylRl~~ma~~k~~~~ea~ 550 (1018)
T KOG2002|consen 475 FKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE----HPGYIDAYLRLGCMARDKNNLYEAS 550 (1018)
T ss_pred HHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH----CchhHHHHHHhhHHHHhccCcHHHH
Confidence 9988765 122333 22233555666678999999999999875 35432 3333333333457788999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh------------cCCHH
Q 006981 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-GVIPDEVFLSALIDFAGH------------AGKVE 321 (623)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~~p~~~~~~~li~~~~~------------~g~~~ 321 (623)
..++.....+ ..++.+++.+...+.+...+..|.+-|....+. ...+|..+.-+|...|.+ .+..+
T Consensus 551 ~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~ 629 (1018)
T KOG2002|consen 551 LLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQE 629 (1018)
T ss_pred HHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHH
Confidence 9999998876 677889999999999999999999977776653 233687777777776654 24577
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 006981 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (623)
Q Consensus 322 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (623)
+|+++|.++.+.. +-|...-|.+.-.++..|++.+|..+|.+..+... .+..+|-.+.++|...|++..|+++|+...
T Consensus 630 KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~l 707 (1018)
T KOG2002|consen 630 KALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCL 707 (1018)
T ss_pred HHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999998876 56788888899999999999999999999997653 345678889999999999999999999865
Q ss_pred H-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 402 S-LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (623)
Q Consensus 402 ~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 451 (623)
+ .+-.-+......|..++.+.|.+.+|.+........-..-....+|..+
T Consensus 708 kkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 708 KKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 4 4434577788889999999999999999998887643333334455444
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.64 E-value=9.7e-13 Score=124.62 Aligned_cols=409 Identities=14% Similarity=0.198 Sum_probs=273.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhC----CCC----CHHHHHHHHHHHHcCCCh
Q 006981 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNP----TLSTFNMLMSVCASSKDS 108 (623)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~----~~~~~~~li~~~~~~~~~ 108 (623)
-+....+|+..++-+.+...+|..-.+...++..+.+.+.+.+|+++|+.. |.- .+...|.+.-.+.+.|++
T Consensus 213 ~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy 292 (840)
T KOG2003|consen 213 ANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQY 292 (840)
T ss_pred hhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccc
Confidence 355678888888888887777666666666677777788899999998654 322 223455555567889999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC------------CCHHHHHHHH-----HH
Q 006981 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE------------PNVHTYGALI-----DG 171 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~------------~~~~~~~~li-----~~ 171 (623)
+.|+.-|+...+. .|+..+-..|+-++...|+-++..+.|.+|+..... |+....|--| .-
T Consensus 293 ~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~ 370 (840)
T KOG2003|consen 293 DDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKN 370 (840)
T ss_pred hhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHH
Confidence 9999999988775 577766555666677788999999999998764322 2333333222 22
Q ss_pred HHhcC--CHHHHHHHHHHHHhCCCCCCHHH---H----------H--------HHHHHHHccCCHHHHHHHHHHHhhCCC
Q 006981 172 CAKAG--QVAKAFGAYGIMRSKNVKPDRVV---F----------N--------ALITACGQSGAVDRAFDVLAEMNAEVH 228 (623)
Q Consensus 172 ~~~~g--~~~~A~~~~~~m~~~g~~p~~~~---~----------~--------~li~~~~~~g~~~~A~~~~~~m~~~~~ 228 (623)
.-+.. +.++++-.-.+++.--+.||-.. | . .-..-+.+.|+++.|.+++.-+.++..
T Consensus 371 ~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdn 450 (840)
T KOG2003|consen 371 MEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDN 450 (840)
T ss_pred HHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccc
Confidence 22211 12233322222322222333211 0 0 011236788999988888877655321
Q ss_pred CCCCCHHHHHHHH--H----------------------------------HHHHcCChHHHHHHHHHHHhcCCCCCHHHH
Q 006981 229 PVDPDHITIGALM--K----------------------------------ACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (623)
Q Consensus 229 ~~~~~~~~~~~ll--~----------------------------------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 272 (623)
... ...-+.|. . .....|++++|.+.+++....+..-....|
T Consensus 451 k~~--saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealf 528 (840)
T KOG2003|consen 451 KTA--SAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALF 528 (840)
T ss_pred hhh--HHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHH
Confidence 111 01111110 0 111347888888888888776532222233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006981 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (623)
Q Consensus 273 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 352 (623)
| +.-.+-..|+.++|++.|-++...- .-+...+.-+...|....+..+|++++-+.... ++.|+.+.+.|.+.|-+.
T Consensus 529 n-iglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 529 N-IGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQE 605 (840)
T ss_pred H-hcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcc
Confidence 3 3334667899999999988765421 125667777888888889999999988776554 567889999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHH
Q 006981 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE-RKDDVEVGLML 431 (623)
Q Consensus 353 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~ 431 (623)
|+-..|.+.+-.--+. ++-|..+..-|..-|....-+++|+.+|++..- +.|+..-|..++..|. +.|+++.|..+
T Consensus 606 gdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 606 GDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred cchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 9999998876554332 345777777777788888889999999998765 6899999999987765 58999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh
Q 006981 432 LSQAKEDGVIPNLVMFKCIIGMCSR 456 (623)
Q Consensus 432 ~~~~~~~g~~p~~~~~~~li~~~~~ 456 (623)
++...+. +..|......|+..|+.
T Consensus 683 yk~~hrk-fpedldclkflvri~~d 706 (840)
T KOG2003|consen 683 YKDIHRK-FPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHHHHHh-CccchHHHHHHHHHhcc
Confidence 9988753 66788888888887654
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.58 E-value=7.9e-11 Score=121.52 Aligned_cols=367 Identities=13% Similarity=0.138 Sum_probs=277.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHcCC
Q 006981 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSK 106 (623)
Q Consensus 30 ~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~ 106 (623)
.-.|.+.-.|++++|..++.+..+.+ |.+...+..++..+.+.|+.+++...+-.+ .+.|...|-.+.....+.|
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence 34566667799999999999999998 778888888999999999999999987654 3667789999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCHHHHH
Q 006981 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY----GALIDGCAKAGQVAKAF 182 (623)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~----~~li~~~~~~g~~~~A~ 182 (623)
.+++|.-.|.+..+.. +++...+---...|-+.|+...|..-|.++.+...+.|..-. -..+..+...++-+.|.
T Consensus 222 ~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999886 556555556778899999999999999999987422222222 23455666778889999
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC-------------------------CCCCCCCHHH
Q 006981 183 GAYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-------------------------VHPVDPDHIT 236 (623)
Q Consensus 183 ~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------------------~~~~~~~~~~ 236 (623)
+.++..... +-..+...++.++..+.+...++.|......+... +.+..++..+
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 999888763 22345567888888899999999988887776551 1112233333
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006981 237 IGALMKACANAGQVDRAREVYKMIHKYN--IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (623)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 314 (623)
+ -++-++.+....+....+.....+.+ +..+...|.-+..+|...|++.+|+++|..+......-+...|-.+..+|
T Consensus 381 ~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 381 I-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY 459 (895)
T ss_pred H-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence 1 12223445555555666666666666 34456789999999999999999999999999876655788899999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHHc
Q 006981 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS--------IKLKPTVSTMNALITALCD 386 (623)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~~~~~li~~~~~ 386 (623)
-..|..++|.+.+..+.... +.+...--+|-..+.+.|+.++|.+.+..+.. .+..|+...--.....|.+
T Consensus 460 ~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 99999999999999998874 44566667788889999999999999999652 2233444444455667778
Q ss_pred CCChhhHHHHHHHHH
Q 006981 387 GDQLPKTMEVLSDMK 401 (623)
Q Consensus 387 ~g~~~~A~~l~~~m~ 401 (623)
.|+.++=+..-..|+
T Consensus 539 ~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 539 VGKREEFINTASTLV 553 (895)
T ss_pred hhhHHHHHHHHHHHH
Confidence 888777655555553
No 31
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.7e-10 Score=110.27 Aligned_cols=258 Identities=15% Similarity=0.046 Sum_probs=121.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCC
Q 006981 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249 (623)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~ 249 (623)
.++-...+.+++++-.+.....|++-+...-+....+.-...++++|..+|+++.+..+=--.|..+|+.++-.-.....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 34444445555555555555555444433333333444444555555555555554321111234444444422111111
Q ss_pred hH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006981 250 VD-RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328 (623)
Q Consensus 250 ~~-~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 328 (623)
+. .|..+++ +. +--+.|...+.+.|+-.++.++|...|++.++.+.. ....|+.+..-|....+...|.+-++
T Consensus 315 Ls~LA~~v~~-id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 315 LSYLAQNVSN-ID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HHHHHHHHHH-hc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 11 1111111 11 111244445555555555555555555555554332 33445555555555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCC
Q 006981 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (623)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 408 (623)
...+-+ +.|-..|-.|.++|.-.+...-|+-.|++..+.. +-|...|.+|..+|.+.++.++|++.|......| ..+
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 555543 3345555555555555555555555555555433 2345555555555555555555555555555433 224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 409 TITYSILLVACERKDDVEVGLMLLSQAK 436 (623)
Q Consensus 409 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (623)
...+..|...+-+.++.++|.+.|++-+
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4455555555555555555555555443
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.56 E-value=2.5e-14 Score=138.78 Aligned_cols=257 Identities=18% Similarity=0.171 Sum_probs=61.3
Q ss_pred HHHHcCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006981 100 SVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (623)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 178 (623)
..+.+.|++++|++++....... .+.|...|..+...+...++.+.|.+.++++...+ +-+...+..++.. ...+++
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccccc
Confidence 34444455555555553322221 12223333333344444455555555555554443 1133334444444 345555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 006981 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258 (623)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 258 (623)
++|.+++.+..+. .++...+...+..+.+.++++++.++++.+... ...+.+...|..+...+.+.|+.++|.+.++
T Consensus 94 ~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 94 EEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEEL-PAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH--T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555444332 233344444444455555555555555554332 1223344444444455555555555555555
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006981 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338 (623)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 338 (623)
+..+.. |.+....+.++..+...|+.+++.+++....+.. ..|...+..+..++...|+.++|...++...+.. +.|
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 555443 3344445555555555555555444444443332 1122334444444445555555555555444432 224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 339 IISYSSLMGACSNAKNWQKALELYEH 364 (623)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~ 364 (623)
+.+...+.+++.+.|+.++|.++.++
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHHHT--------------
T ss_pred cccccccccccccccccccccccccc
Confidence 44444444455555555555444443
No 33
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.55 E-value=3.1e-11 Score=123.34 Aligned_cols=291 Identities=10% Similarity=-0.035 Sum_probs=175.2
Q ss_pred hhHHHHHHHHHhhhCCC--CC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 006981 73 SQKAIKEAFRFFKLVPN--PT-LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149 (623)
Q Consensus 73 ~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 149 (623)
..|+++.|.+.+.+... |+ ...+-....+..+.|+.+.|.+.+.+..+....++..........+...|+++.|.+.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34667777777665442 22 2333344456667778888888887776543222223334456677777888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HccCCHHHHHHHHHHHhhC
Q 006981 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC---GQSGAVDRAFDVLAEMNAE 226 (623)
Q Consensus 150 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~ 226 (623)
++.+.+.. +.+..++..+...+.+.|++++|.+.+..+.+.++.+.......-..++ ...+..+++.+.+..+...
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 88877764 3456677777777888888888888888887775432222111111111 2222222223333333332
Q ss_pred CC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006981 227 VH-PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303 (623)
Q Consensus 227 ~~-~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 303 (623)
.. ..+.+...+..+...+...|+.+.|.+++++..+.. +.+... ...........++.+.+.+.++...+.... |
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~ 332 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-K 332 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-C
Confidence 10 012356677777778888888888888888877754 222211 111222223346677777777776665322 3
Q ss_pred H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 304 E--VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (623)
Q Consensus 304 ~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (623)
. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-.
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 45567777788888888888888854444446777777788888888888888888887753
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.55 E-value=1.5e-10 Score=119.53 Aligned_cols=359 Identities=14% Similarity=0.092 Sum_probs=269.8
Q ss_pred hhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 006981 73 SQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149 (623)
Q Consensus 73 ~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 149 (623)
..|+.++|.+++.++. +.+...|.+|...|-+.|+.+++...+-.+--.. +.|...|..+.....+.|.+++|.-.
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3489999999998874 5677899999999999999999998876655443 66788999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHccCCHHHHHHHHHHHhh
Q 006981 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA----LITACGQSGAVDRAFDVLAEMNA 225 (623)
Q Consensus 150 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~ 225 (623)
|.+.++.. +++...+---+..|-+.|+...|...|.++.....+.|..-+.. .++.+...++.+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999875 55655666667889999999999999999988743223333333 45556677778999999888776
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC---------------------------CCCHHHHHHHHHH
Q 006981 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI---------------------------KGTPEVYTIAINC 278 (623)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---------------------------~~~~~~~~~li~~ 278 (623)
. .+-..+...++.++..+.+...++.|.........+.. .++..+. .+.-+
T Consensus 309 ~-~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~ic 386 (895)
T KOG2076|consen 309 K-EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMIC 386 (895)
T ss_pred h-ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhh
Confidence 3 22344555778888889999999998888776665221 2222221 22333
Q ss_pred HHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006981 279 CSQTGDWEFACSVYDDMTKKG--VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356 (623)
Q Consensus 279 ~~~~g~~~~A~~l~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 356 (623)
+......+....+...+.... +.-+...|.-+..++.+.|++.+|+.+|..+......-+..+|-.+..+|...|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 444444444455555555555 333556788899999999999999999999998866667889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006981 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK--------SLGLCPNTITYSILLVACERKDDVEVG 428 (623)
Q Consensus 357 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~--------~~g~~p~~~t~~~ll~a~~~~g~~~~a 428 (623)
+|.+.|+...... +-+...-..|-..+-+.|+.++|++.+..+. ..+..|+..........+...|+.++=
T Consensus 467 ~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 467 EAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 9999999998753 2345566677788999999999999999854 233556666666666778888888875
Q ss_pred HHHHHHHH
Q 006981 429 LMLLSQAK 436 (623)
Q Consensus 429 ~~~~~~~~ 436 (623)
..+-..|+
T Consensus 546 i~t~~~Lv 553 (895)
T KOG2076|consen 546 INTASTLV 553 (895)
T ss_pred HHHHHHHH
Confidence 55555554
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.54 E-value=4.4e-14 Score=137.07 Aligned_cols=259 Identities=17% Similarity=0.150 Sum_probs=90.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHcCC
Q 006981 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSK 106 (623)
Q Consensus 30 ~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~ 106 (623)
...+.+.+.|++++|++++++.......+.+..+...++.++...++.+.|.+.++++.. .+...+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 334556678888888888855443332245555555566666677777777777776652 234455566655 5677
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (623)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (623)
++++|.++++...+. .+++..+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777666544 3455566667777777777777777777766432 2346666777777777777777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 006981 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265 (623)
Q Consensus 186 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 265 (623)
++..+.. +-|....+.++..+...|+.+++.+++....... +.|...+..+..+|...|+.++|..+|++..+.+
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~---~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA---PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC---cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 7777652 2246666777777777777777777776665431 2334456667777777777777777777776654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (623)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (623)
+.|+.+...+..++.+.|+.++|.++..+..
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp TT-HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 5566777777777777777777777766543
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=2.3e-09 Score=102.91 Aligned_cols=415 Identities=13% Similarity=0.090 Sum_probs=291.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChHHHHH
Q 006981 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (623)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~ 113 (623)
.++++..|+++|++.+.-+ ..+..+....+..-.++..++.|..+|++.. |.-...|-..+-.--..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence 4677888999999998766 3444444455556667788999999998753 3333456666666667899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C
Q 006981 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-N 192 (623)
Q Consensus 114 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g 192 (623)
+|++-.+. .|+...|++.|+.=.+...++.|..+|+...-. .|++.+|---...=.++|....|..+|+..... |
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 99988875 899999999999999999999999999998764 699999999998888999999999999888754 2
Q ss_pred C-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC--HHHHHHHHHHHHHcCChHHHHHH--------HHHHH
Q 006981 193 V-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREV--------YKMIH 261 (623)
Q Consensus 193 ~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~~--------~~~~~ 261 (623)
- .-+...+.+...-=.++..++.|.-+|.-.... ++.+ ...|......--+.|+....... ++.+.
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~---~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH---IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 0 111223333333334566788888888777653 2323 34455555444455654433332 23444
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHH-----HH---HhcCCHHHHHHHHHHHH
Q 006981 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALID-----FA---GHAGKVEAAFEILQEAK 331 (623)
Q Consensus 262 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~--~~~~~li~-----~~---~~~g~~~~a~~~~~~~~ 331 (623)
+.+ +.|-.+|--.+..-...|+.+...++|++.... ++|-. ..|..-|- ++ ....+.+.+.++++...
T Consensus 316 ~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 316 SKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444 566678888888888889999999999988765 33321 12221111 11 24578888999998887
Q ss_pred HCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCC
Q 006981 332 NQGISVGIISYSSLMGAC----SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (623)
Q Consensus 332 ~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 407 (623)
+. ++-...||.-+--+| .++.++..|.+++...+ |..|-..++-..|..-.+.+.+|...+++++.++.+ +-
T Consensus 394 ~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe 469 (677)
T KOG1915|consen 394 DL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PE 469 (677)
T ss_pred hh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hH
Confidence 73 444556666555455 46788899999888765 456888888888888888999999999999988854 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh--cHHHHHHhhH
Q 006981 408 NTITYSILLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMCSR--RYEKARTLNE 466 (623)
Q Consensus 408 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-g~~p~~~~~~~li~~~~~--~~~~a~~~~~ 466 (623)
|..+|.-....-...|+.+.|..+|+.++.. .++.....|.+.|+-=.. .+++|..+.+
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYE 531 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHH
Confidence 7788888888778889999999999988865 344455567777764211 3455554443
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.53 E-value=4.8e-11 Score=121.24 Aligned_cols=285 Identities=13% Similarity=0.046 Sum_probs=211.2
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHH
Q 006981 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG--ALIDGCAKAGQVAKAF 182 (623)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~ 182 (623)
.|+++.|.+.+....+..-. ....|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 68888888877776554211 2333444455557889999999999888875 45543332 3366788889999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCH------HHHHHHHHHHHHcCChHHHHHH
Q 006981 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH------ITIGALMKACANAGQVDRAREV 256 (623)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~------~~~~~ll~~~~~~g~~~~A~~~ 256 (623)
..++++.+.. +-+......+...|.+.|++++|.+++..+.+.. ...++. .+|..++.......+.+...++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~-~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH-VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999988775 4456777888888999999999999998888752 223332 2344555555555666777777
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006981 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336 (623)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 336 (623)
++.+.+.- +.++.....+...+...|+.++|.+++++..+. .||... .++.+....++.+++.+..+...+.. +
T Consensus 252 w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 77765543 567788889999999999999999999988875 344421 12333345588999999998888764 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 006981 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (623)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (623)
-|......+...|.+.|++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56777888999999999999999999999875 58888888999999999999999999988654
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.53 E-value=6.4e-11 Score=120.38 Aligned_cols=283 Identities=9% Similarity=0.015 Sum_probs=218.1
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHccCCHHHH
Q 006981 140 SGKVDAMFEVFHEMVNAGIEPNVHT-YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN--ALITACGQSGAVDRA 216 (623)
Q Consensus 140 ~g~~~~A~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~A 216 (623)
.|+++.|.+......+.. ++... |........+.|+++.|...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 699999998888766542 22333 333345558899999999999999875 55554333 335678889999999
Q ss_pred HHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHH
Q 006981 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP-------EVYTIAINCCSQTGDWEFAC 289 (623)
Q Consensus 217 ~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~ 289 (623)
.+.++++.+.. +.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...
T Consensus 173 l~~l~~~~~~~---P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 173 RHGVDKLLEVA---PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHhcC---CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999988642 445677888899999999999999999999988754322 23444555555556667777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006981 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (623)
Q Consensus 290 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (623)
++++.+.+.- ..+......+...+...|+.++|..++.+..+. +++.... ++.+....++.+++.+..+...+..
T Consensus 250 ~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 250 RWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC
Confidence 7777765432 337778888999999999999999999998874 4454322 3334446699999999999888764
Q ss_pred CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 370 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
+-|...+.++...+.+.+++++|.+.|+.+.+. .|+..++..+..++.+.|+.++|.+++++...
T Consensus 325 -P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 -GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 346677888999999999999999999999984 79999999999999999999999999988754
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.2e-09 Score=104.75 Aligned_cols=292 Identities=10% Similarity=0.042 Sum_probs=189.5
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHccCC
Q 006981 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK--PDRVVFNALITACGQSGA 212 (623)
Q Consensus 135 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~ 212 (623)
.++-.....+++.+-.......|++.+...-+....+.-...++++|+.+|+++.+...- -|..+|+.++-.--....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 444455566677776777777776655554444445555667788888888888776311 145666666533222111
Q ss_pred HH-HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006981 213 VD-RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291 (623)
Q Consensus 213 ~~-~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 291 (623)
+. -|..++. + ....|. |+..+.+-|+-.++.++|...|++..+.+ +....+|+.|.+-|....+...|.+-
T Consensus 315 Ls~LA~~v~~-i----dKyR~E--TCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 315 LSYLAQNVSN-I----DKYRPE--TCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHHHHHHHHH-h----ccCCcc--ceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 11 1222221 1 123443 66667777777788888888888888776 55667788888888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006981 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371 (623)
Q Consensus 292 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 371 (623)
++...+-... |-..|-.+.++|.-.+...-|+-.|++..+-. +.|...|.+|..+|.+.++.++|.+.|.+....| .
T Consensus 387 YRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 8887776543 77778888888888888888888888777654 4577788888888888888888888888777655 2
Q ss_pred CCHHHHHHHHHHHHcCCChhhHHHHHHHHHH----CCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKS----LGLCPNTIT--YSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 372 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~t--~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
-+...+..|...|-+.++..+|...|.+-++ .|..-+... ..-|..-+.+.+++++|..+.....+
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 3556777788888888888888777776544 232222111 11233445666777776665554443
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.50 E-value=1.4e-10 Score=118.50 Aligned_cols=286 Identities=12% Similarity=0.002 Sum_probs=144.2
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHH
Q 006981 103 ASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV--HTYGALIDGCAKAGQVA 179 (623)
Q Consensus 103 ~~~~~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~ 179 (623)
...|+++.|.+.+....+.. |+ ...+-....++.+.|+.+.|.+.+.+..+. .|+. ...-.....+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence 34677777777777666543 33 333444456666777777777777776654 2332 23333466667777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHH-HHH---HHHHcCChHHHHH
Q 006981 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA-LMK---ACANAGQVDRARE 255 (623)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~-ll~---~~~~~g~~~~A~~ 255 (623)
.|...++.+.+.. +-+...+..+...+...|++++|.+++..+.+.+ . .+...+.. -.. .....+..+.+..
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~--~-~~~~~~~~l~~~a~~~~l~~~~~~~~~~ 246 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG--L-FDDEEFADLEQKAEIGLLDEAMADEGID 246 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--C-CCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 7777777777664 3355566677777777777777777777776542 1 12222211 011 1112222222222
Q ss_pred HHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHH--HHhcCCHHHHHHHHHH
Q 006981 256 VYKMIHKYNI---KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS-ALIDF--AGHAGKVEAAFEILQE 329 (623)
Q Consensus 256 ~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~-~li~~--~~~~g~~~~a~~~~~~ 329 (623)
.+..+.+... +.++..+..+...+...|+.++|.+++++..+... |..... .++.. ....++.+.+.+.++.
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p--d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG--DDRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC--CcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 3333332211 13556666666666666777777776666666532 221100 01111 1122444444444444
Q ss_pred HHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHH
Q 006981 330 AKNQGISVGI--ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (623)
Q Consensus 330 ~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 399 (623)
..+.. +-|. ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++
T Consensus 325 ~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 325 QAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 43331 1122 333444444555555555555555222211234444444445555555555555555444
No 41
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.49 E-value=1.3e-08 Score=101.60 Aligned_cols=416 Identities=13% Similarity=0.092 Sum_probs=330.4
Q ss_pred ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhh---hCCCCCHHHHHHHHH
Q 006981 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK---LVPNPTLSTFNMLMS 100 (623)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~---~~~~~~~~~~~~li~ 100 (623)
.++.++..|..-+.....++|+-++.+..+-= |.+...... +.+..-++.|.+++. +..+.+...|.+-..
T Consensus 375 ~iP~sv~LWKaAVelE~~~darilL~rAvecc--p~s~dLwlA----larLetYenAkkvLNkaRe~iptd~~IWitaa~ 448 (913)
T KOG0495|consen 375 HIPRSVRLWKAAVELEEPEDARILLERAVECC--PQSMDLWLA----LARLETYENAKKVLNKAREIIPTDREIWITAAK 448 (913)
T ss_pred hCCchHHHHHHHHhccChHHHHHHHHHHHHhc--cchHHHHHH----HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHH
Confidence 45778899999999999999999999988753 444333322 334455667777665 456788999999888
Q ss_pred HHHcCCChHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHh
Q 006981 101 VCASSKDSEGAFQVLRLV----QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP--NVHTYGALIDGCAK 174 (623)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~ 174 (623)
.--.+|+.+....+..+- ...|+.-+...|..=...|-..|.+-.+..+....+..|++- -..||+.-...|.+
T Consensus 449 LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k 528 (913)
T KOG0495|consen 449 LEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEK 528 (913)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHh
Confidence 888899999988887654 457888899999999999999999999999999988887653 35689999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 006981 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254 (623)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 254 (623)
.+.++-|..+|...++. .+.+...|......--..|..+....+|.+.... ++.....|......+-..|++..|+
T Consensus 529 ~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~---~pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 529 RPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ---CPKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred cchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHhcCCcHHHH
Confidence 99999999999998876 3556778887777777789999999999998864 3444556667778888899999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006981 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (623)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (623)
.++..+.+.+ +.+...|-+-+.....+..++.|..+|.+.... .|+...|..-+..---.+..++|.+++++..+.
T Consensus 605 ~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~- 680 (913)
T KOG0495|consen 605 VILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS- 680 (913)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-
Confidence 9999998886 568889999999999999999999999988775 456666666666666678999999999888876
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHH
Q 006981 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414 (623)
Q Consensus 335 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 414 (623)
++.-...|..+.+.+-+.++++.|...|..-.+. ++-.+..|-.|...--+.|++-+|..+|++..-.+ +-|...|..
T Consensus 681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle 758 (913)
T KOG0495|consen 681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLE 758 (913)
T ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHH
Confidence 3444667888889999999999999988765543 23345678888888888899999999999987764 347888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006981 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (623)
Q Consensus 415 ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 456 (623)
.|..-.+.|+.+.|..+..+.++. +..+-..|..-|-+..+
T Consensus 759 ~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~ 799 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPR 799 (913)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccC
Confidence 999999999999999998888753 44455567666666543
No 42
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.48 E-value=8.9e-08 Score=95.78 Aligned_cols=366 Identities=15% Similarity=0.101 Sum_probs=239.5
Q ss_pred HHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 006981 75 KAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151 (623)
Q Consensus 75 ~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 151 (623)
...++|+-++.+.. +.+...|.++ ++..-++.|..++....+. ++-+...|.+-...=-..|+.+...++.+
T Consensus 390 E~~~darilL~rAveccp~s~dLwlAl----arLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~ 464 (913)
T KOG0495|consen 390 EEPEDARILLERAVECCPQSMDLWLAL----ARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIID 464 (913)
T ss_pred cChHHHHHHHHHHHHhccchHHHHHHH----HHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34455666666543 3444455443 3444567777777777654 56667777766666667777777766665
Q ss_pred H----HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 006981 152 E----MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD--RVVFNALITACGQSGAVDRAFDVLAEMNA 225 (623)
Q Consensus 152 ~----m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (623)
+ +...|+..+...|-.=...|-+.|..-.+..+....+..|+.-. ..||+.-...|.+.+.++-|..+|....+
T Consensus 465 rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq 544 (913)
T KOG0495|consen 465 RGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ 544 (913)
T ss_pred HHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh
Confidence 4 33457777777777777777777777777777777766665432 35677777777777777777777777665
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 006981 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305 (623)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 305 (623)
. ++.+...|......--..|..+.-..+|+++...- +.....|-....-+-..|+...|..++....+.... +..
T Consensus 545 v---fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-see 619 (913)
T KOG0495|consen 545 V---FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEE 619 (913)
T ss_pred h---ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHH
Confidence 3 34455566666555556677777777777776653 445566666677777777777777777777766443 556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHH
Q 006981 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALITAL 384 (623)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~ 384 (623)
.|-+.+..-..+..++.|..+|.+.... .|+..+|.--+...--.++.++|.+++++..+. .|+- ..|..+.+.+
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~ 695 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIE 695 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHH
Confidence 6777777777777777777777776653 456666666666666677777777777776654 3443 4566666777
Q ss_pred HcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006981 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (623)
Q Consensus 385 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 456 (623)
-+.++.+.|.+.|..-.+. ++-....|..+...--+.|.+-.|+.++++....+ .-+...|-..|.+=.|
T Consensus 696 e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR 765 (913)
T KOG0495|consen 696 EQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELR 765 (913)
T ss_pred HHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHH
Confidence 7777777777777654442 22234556666666667777777777777766432 2345566666766544
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.48 E-value=1.7e-10 Score=109.75 Aligned_cols=420 Identities=16% Similarity=0.190 Sum_probs=264.3
Q ss_pred hcCCHHHHHHHHHHHHH-----------cCCC-----CCchHHHHHHHHHHhhhHHHHHHHHHhhhCCC----CCHH-HH
Q 006981 37 RQGRISECIDLLEDMER-----------KGLL-----DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLS-TF 95 (623)
Q Consensus 37 ~~g~~~~A~~l~~~m~~-----------~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~-~~ 95 (623)
.+|++.+|++--.+.-+ .|.+ ..+..+...+..-+..+....+|+.-|+-+.. ||.- .-
T Consensus 161 ~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lk 240 (840)
T KOG2003|consen 161 ECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILK 240 (840)
T ss_pred hhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceee
Confidence 68888888775544322 1211 11222333444555566677888888876542 2221 22
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (623)
Q Consensus 96 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (623)
-.+...+.+...+.+|+..++..+..-...+ ....+.+.-.+.+.|.++.|+.-|+...+. .||..+-..|+-+
T Consensus 241 mnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~ 318 (840)
T KOG2003|consen 241 MNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIIC 318 (840)
T ss_pred eeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhh
Confidence 2345667888899999999988876522222 224455555677899999999999998876 6888776667777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC------------CCHHHHHHHHH-----HHHccCC--HHHHHHHHHHHhhCCCCCCC
Q 006981 172 CAKAGQVAKAFGAYGIMRSKNVK------------PDRVVFNALIT-----ACGQSGA--VDRAFDVLAEMNAEVHPVDP 232 (623)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~------------p~~~~~~~li~-----~~~~~g~--~~~A~~~~~~m~~~~~~~~~ 232 (623)
+..-|+.++..+.|.+|+..-.. |+....+.-|. -.-+... -+++.-.-..+.. .-+.|
T Consensus 319 ~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiia--pvi~~ 396 (840)
T KOG2003|consen 319 AFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIA--PVIAP 396 (840)
T ss_pred heecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhc--ccccc
Confidence 77789999999999999764322 33333332221 1111111 1222222122221 12233
Q ss_pred CHHH---H----------H--------HHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH-------------
Q 006981 233 DHIT---I----------G--------ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC------------- 278 (623)
Q Consensus 233 ~~~~---~----------~--------~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~------------- 278 (623)
|-.. | . .-...+.+.|+++.|.++++-..+.+-+.-...-+.|-..
T Consensus 397 ~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aq 476 (840)
T KOG2003|consen 397 DFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQ 476 (840)
T ss_pred chhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHH
Confidence 3110 0 0 1122478999999999999888765432221221111111
Q ss_pred -----------------------HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006981 279 -----------------------CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (623)
Q Consensus 279 -----------------------~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (623)
-..+|++++|.+.+++.+..+..-....|+ +.-.+-..|++++|++.|-.+... +
T Consensus 477 qyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l 554 (840)
T KOG2003|consen 477 QYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-L 554 (840)
T ss_pred HHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-H
Confidence 113477888888888887763321222233 222456778899998888776443 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHH
Q 006981 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (623)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 415 (623)
..+..+...+.+.|.-..+...|.+++.+.... ++.|+...+-|...|-+.|+-..|++..-+--+. ++-|..|..-|
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl 632 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWL 632 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHH
Confidence 235677778888888888888898888777543 3456777888888999999998888876554332 45577787777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cHHHHHHhhH
Q 006981 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR---RYEKARTLNE 466 (623)
Q Consensus 416 l~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~---~~~~a~~~~~ 466 (623)
..-|....-+++++.+|++..- +.|+..-|..||..|.| +|.+|..+.+
T Consensus 633 ~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk 684 (840)
T KOG2003|consen 633 AAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYK 684 (840)
T ss_pred HHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 7778888888899999987654 78999999999988876 5666655543
No 44
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=2.7e-10 Score=104.15 Aligned_cols=284 Identities=17% Similarity=0.171 Sum_probs=164.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 006981 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRL 117 (623)
Q Consensus 38 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 117 (623)
+.+.+.|.++|-+|.+.+ +.+...|..++.++.+.|.+|.|+ ++++.
T Consensus 48 s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAI-------------------------------RiHQ~ 94 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAI-------------------------------RIHQT 94 (389)
T ss_pred hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHH-------------------------------HHHHH
Confidence 445556666666666544 444445555555555555555554 44444
Q ss_pred HHHcCCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 118 VQEAGLKAD------CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 118 m~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (623)
+.++ || ....-.|..-|-..|-+|.|.++|..+.+.| +--......|+..|-...+|++|+++-+++.+.
T Consensus 95 L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~ 170 (389)
T COG2956 95 LLES---PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKL 170 (389)
T ss_pred HhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 4432 21 1123345556667777888888887777643 233456677788888888888888888777766
Q ss_pred CCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 006981 192 NVKPDR----VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIK 266 (623)
Q Consensus 192 g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 266 (623)
+-++.. ..|.-|...+....+++.|..++.+..+. .|+ +..--.+.+.....|+++.|.+.++.+.+.+..
T Consensus 171 ~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa----~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~ 246 (389)
T COG2956 171 GGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA----DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPE 246 (389)
T ss_pred CCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh----CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChH
Confidence 533332 22444455555567777888888777654 233 223334556777778888888888888777655
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (623)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 346 (623)
.-+.+...|..+|.+.|+.++....+..+.+....++.. ..+-..-....-.+.|..++.+-.+. +|+...+..|+
T Consensus 247 yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~--l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~ 322 (389)
T COG2956 247 YLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAE--LMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLM 322 (389)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH--HHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHH
Confidence 455667777778888888888777777776654333322 22222222233344444444443333 46666666666
Q ss_pred HHHHh---cCCHHHHHHHHHHHH
Q 006981 347 GACSN---AKNWQKALELYEHMK 366 (623)
Q Consensus 347 ~~~~~---~g~~~~A~~~~~~m~ 366 (623)
+.-.. .|...+...+++.|.
T Consensus 323 ~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 323 DYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HhhhccccccchhhhHHHHHHHH
Confidence 65432 233444445555554
No 45
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=1.2e-09 Score=99.93 Aligned_cols=289 Identities=12% Similarity=0.076 Sum_probs=144.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCH
Q 006981 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV------HTYGALIDGCAKAGQV 178 (623)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~ 178 (623)
+++.++|..+|-+|.+.. +.+..+.-+|.+.|.+.|.+|.|++++..+.++ ||. ...-.|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 456777777777777643 344556667777777777777777777777753 332 2334455556667777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 006981 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258 (623)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 258 (623)
+.|.++|..+...| .--......|+..|-...++++|.++-.++... .++ .++.-|
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~----~~q--~~~~eI----------------- 179 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKL----GGQ--TYRVEI----------------- 179 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc----CCc--cchhHH-----------------
Confidence 77777777766543 223345556666666666777766666655442 111 111110
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006981 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338 (623)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 338 (623)
...|.-+...+....+.+.|..++.+..+.+.+ .+..--.+.+.....|+++.|.+.++.+.+++...-
T Consensus 180 ----------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl 248 (389)
T COG2956 180 ----------AQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL 248 (389)
T ss_pred ----------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH
Confidence 012233333333344444444444444443221 111112233344445555555555555555443333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (623)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 418 (623)
..+...|..+|.+.|+.++....+.++.+.. ++...-..+...-....-.+.|...+.+-+.. +|+...+..++..
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~ 324 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHh
Confidence 4445555555555555555555555554432 22222233333333333344444444433332 4666666666654
Q ss_pred HHh---cCCHHHHHHHHHHHH
Q 006981 419 CER---KDDVEVGLMLLSQAK 436 (623)
Q Consensus 419 ~~~---~g~~~~a~~~~~~~~ 436 (623)
-.. .|...+....++.|+
T Consensus 325 ~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 325 HLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred hhccccccchhhhHHHHHHHH
Confidence 322 233444444555554
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=9.1e-11 Score=117.42 Aligned_cols=283 Identities=14% Similarity=0.082 Sum_probs=193.9
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCCHH-HHHH
Q 006981 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV--KPDRVVFNALITACGQSGAVD-RAFD 218 (623)
Q Consensus 142 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~-~A~~ 218 (623)
+..+|...|..+... +.-+..+...+..+|...+++++|.++|+.+++... --+...|.+.+--+-+.-.+. -|..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 456778888775544 222345566777788888888888888888776420 114456666654433221111 1222
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
+.+.. +-...+|.++.++|+-+++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+..+..
T Consensus 413 Li~~~-------~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 413 LIDTD-------PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHhhC-------CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 22221 2234588888888888888888888888887765 446678888888888888888888888877665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006981 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378 (623)
Q Consensus 299 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 378 (623)
... +-..|.-+...|.+.++++.|+-.|+...+-+ +.+.+....+...+-+.|+.++|++++++...... .|+.+--
T Consensus 485 ~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~ 561 (638)
T KOG1126|consen 485 DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKY 561 (638)
T ss_pred Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHH
Confidence 332 34456667777888888888888888887765 44566667777778888888888888888776553 3555555
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (623)
Q Consensus 379 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (623)
..+..+...+++++|+..++++++ +.|+ ...|..+...|.+.|+.+.|+.-|.-+.+.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 566777778888888888888887 4565 445666677888888888888888777664
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=7.6e-11 Score=117.96 Aligned_cols=261 Identities=11% Similarity=0.008 Sum_probs=157.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 006981 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256 (623)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 256 (623)
+..+|+..|.++... +.-+..+...+.++|...+++++|.++|+.+.+...-..-+...|++.+--+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 346677777775443 222234445566777777777777777777766432223345666666533221 112222
Q ss_pred H-HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006981 257 Y-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (623)
Q Consensus 257 ~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (623)
+ +.+.+.+ +..+.+|-++.++|.-.++.+.|++.|++..+.+.. ...+|+.+..-+.....+|.|...|+......
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 2 2233332 455677777777777777777777777777765432 55667777666777777777777777665432
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHH
Q 006981 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (623)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 415 (623)
+-+...|..|.-.|.|.++++.|.-.|+...+.+ +.+.+....+...+.+.|+.++|+++++++.... +-|...--.-
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence 1122333445566777777777777777777655 2355666666677777777777777777776532 1144443344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006981 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449 (623)
Q Consensus 416 l~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~ 449 (623)
...+...+++++|.+.++++++ +.|+..+--.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~ 595 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE--LVPQESSVFA 595 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH--hCcchHHHHH
Confidence 4556667777777777777776 4566554333
No 48
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.41 E-value=2.5e-09 Score=100.97 Aligned_cols=285 Identities=16% Similarity=0.133 Sum_probs=181.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006981 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (623)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (623)
.|++.+|..+..+-.+++ +-....|..-..+.-..|+.+.+-.++.+..+..-.++....-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 578888888888877776 3335566667777778888888888888887653355666777777778888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-------HHHHHHHHHHHHHcCChHHHHHHH
Q 006981 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-------HITIGALMKACANAGQVDRAREVY 257 (623)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-------~~~~~~ll~~~~~~g~~~~A~~~~ 257 (623)
.+++.+.+ +.++.......++|.+.|++.....++..+.+.+ .-.| ..+|..+++-....+..+.-...+
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~--~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG--LLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc--CCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 88877765 4456677778888888888888888888887642 2222 234555555444444444444555
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006981 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337 (623)
Q Consensus 258 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 337 (623)
+..... .+.++..-.+++.-+.++|+.++|.++..+..+.+..|. ...++ .+.+-++.+.-.+..+.-.+.. +.
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h-~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQH-PE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHH-hhcCCCCchHHHHHHHHHHHhC-CC
Confidence 555433 244455666666677777777777777777666655544 11111 2334455554444444433331 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 006981 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (623)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (623)
++..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+..+|.+.|+..+|.++.++..
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3355666666666666666666666655543 4666666666666666666666666666654
No 49
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.37 E-value=3.4e-10 Score=116.29 Aligned_cols=250 Identities=16% Similarity=0.155 Sum_probs=142.0
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006981 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194 (623)
Q Consensus 115 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 194 (623)
+..+...|+.|+.+||..+|.-||..|+.+.|- +|.-|.-...+.+...++.++.+..+.++.+.+. .
T Consensus 13 la~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e 80 (1088)
T KOG4318|consen 13 LALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E 80 (1088)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------C
Confidence 334444555555555555555555555555554 5555544444444555555555555555544443 3
Q ss_pred CCHHHHHHHHHHHHccCCHHH-----------------------HHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChH
Q 006981 195 PDRVVFNALITACGQSGAVDR-----------------------AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (623)
Q Consensus 195 p~~~~~~~li~~~~~~g~~~~-----------------------A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 251 (623)
|...||+.|..+|...||+.. -..++..+.- ..+.-||..+ .+......|-++
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c-~p~~lpda~n---~illlv~eglwa 156 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHC-CPHSLPDAEN---AILLLVLEGLWA 156 (1088)
T ss_pred CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhccc-CcccchhHHH---HHHHHHHHHHHH
Confidence 444555555555555555322 2222221111 1223344322 233334455666
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (623)
Q Consensus 252 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (623)
.+.+++..++...... +... +++-+.... .+++-....+...+ .|+..+|..++..-..+|+.+.|..++.+|
T Consensus 157 qllkll~~~Pvsa~~~-p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~em 230 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNA-PFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEM 230 (1088)
T ss_pred HHHHHHhhCCcccccc-hHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 6666665554322111 1111 133222222 22332222222222 478889999999888899999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 006981 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (623)
Q Consensus 331 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 389 (623)
.+.|++.+..-|..|+-+ .++..-+..+++.|.+.|+.|+..|+...+..+.++|.
T Consensus 231 ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 231 KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999988888888888765 77888888888889999999999998887777777555
No 50
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=2.3e-07 Score=89.49 Aligned_cols=357 Identities=15% Similarity=0.103 Sum_probs=266.4
Q ss_pred hhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 006981 72 KSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (623)
Q Consensus 72 ~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 148 (623)
-+++++..|.++|++.. ..++..|-..+..-.++..+..|..++++....-...| ..|-.-+.+=-..|++..|.+
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHH
Confidence 45678899999999875 56777888888899999999999999999987532222 345556666678899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 006981 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228 (623)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 228 (623)
+|+...+- +|+...|++.|+.=.+.+.++.|..+|++..-. .|++.+|.-..+.=-++|....|..+|......-.
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 99999876 899999999999999999999999999998864 79999999888888899999999999998876311
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHH--------HHHHHhC
Q 006981 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT--PEVYTIAINCCSQTGDWEFACSV--------YDDMTKK 298 (623)
Q Consensus 229 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l--------~~~m~~~ 298 (623)
.-.-+...+.+....-.++..++.|.-+|+-..+.- +.+ ...|..+...--+-|+.....+. ++.+.+.
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 111223345555555567788999999999887763 333 34566666555556665433332 3344444
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H-HHHHHH--------HHHHhcCCHHHHHHHHHHHHhC
Q 006981 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI-I-SYSSLM--------GACSNAKNWQKALELYEHMKSI 368 (623)
Q Consensus 299 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~-~~~~li--------~~~~~~g~~~~A~~~~~~m~~~ 368 (623)
+. -|-.+|--.+..-...|+.+...++++..+..- +|-. . .|.-.| -.-....+.+.+.++|+...+.
T Consensus 318 np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 318 NP-YNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred CC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 33 266777777777778899999999999998763 4421 1 121111 1113578899999999988773
Q ss_pred CCCCCHHHHHHH----HHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006981 369 KLKPTVSTMNAL----ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (623)
Q Consensus 369 ~~~~~~~~~~~l----i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g 439 (623)
++....|+.-+ ..-..++.+...|.+++...+ |.-|-..+|...|..-.+.++++.+..++++.++.+
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 23344555443 334457888999999998877 568999999999999999999999999999999853
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=1.9e-08 Score=97.16 Aligned_cols=389 Identities=11% Similarity=0.062 Sum_probs=227.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCC--C-CHHHHHHHHHHHHcCCChH
Q 006981 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--P-TLSTFNMLMSVCASSKDSE 109 (623)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~ 109 (623)
|...++|.+++|++.+.+.++.. |...+++......+...|++++..+.-.+... | -+..++.-.+++-..|++.
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFD 200 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHH
Confidence 34458999999999999998876 55577777778888888999988887766543 2 2345555566777778877
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-CC--CCCCHHHHHHHHHHHHh------------
Q 006981 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN-AG--IEPNVHTYGALIDGCAK------------ 174 (623)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g--~~~~~~~~~~li~~~~~------------ 174 (623)
+|+.=..-..-.+---|..+--.+=+.+-+ .|....++-.+ .+ +-|+....++....+..
T Consensus 201 eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 201 EALFDVTVLCILEGFQNASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred HHHHhhhHHHHhhhcccchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 775433222111100111111101111111 11111111111 11 22333333332222211
Q ss_pred -------------cC---CHHHHHHHHHHHHhC-CCCCC-----------HHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 006981 175 -------------AG---QVAKAFGAYGIMRSK-NVKPD-----------RVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (623)
Q Consensus 175 -------------~g---~~~~A~~~~~~m~~~-g~~p~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (623)
.+ .+..|.+.+.+-... -..++ ..+.......+.-.|+...|.+-|+.....
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 01 122222222111100 00011 111111111233457777888888877753
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 006981 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306 (623)
Q Consensus 227 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 306 (623)
. +.+...|--+..+|....+.++..+.|++..+.+ +.++.+|..-...+.-.+++++|..=|++.+..... +...
T Consensus 356 ~---~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~ 430 (606)
T KOG0547|consen 356 D---PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYA 430 (606)
T ss_pred C---cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHH
Confidence 2 1122226666677888888888888888888877 667778888888888888888888888888776432 4445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHHHH--HH
Q 006981 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK-----PTVSTM--NA 379 (623)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----~~~~~~--~~ 379 (623)
|.-+--+..+.+++++++..|++.++. ++..+.+|+.....+...+++++|.+.|+...+.... -+...+ -+
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka 509 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKA 509 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhh
Confidence 555555556778888888888888776 4566778888888888888888888888877654211 011111 11
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 380 LITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 380 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
++ .+.=.+++..|.+++++..+. .| ....|.+|...-.+.|+.++|+++|++...
T Consensus 510 ~l-~~qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 510 LL-VLQWKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred Hh-hhchhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 111237788888888888774 44 466788888888888888888888877653
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.33 E-value=2.1e-08 Score=94.94 Aligned_cols=285 Identities=12% Similarity=0.041 Sum_probs=202.0
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 006981 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219 (623)
Q Consensus 140 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 219 (623)
.|++..|+++..+-.+.+ +.....|..-..+.-+.|+.+.+-+.+.+..+.--.++....-+..+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 588888888888877765 3334556666677778888888888888887663345566666677778888888888888
Q ss_pred HHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHH
Q 006981 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP-------EVYTIAINCCSQTGDWEFACSVY 292 (623)
Q Consensus 220 ~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~l~ 292 (623)
++++.... +.+..+......+|.+.|++.....++..+.+.+.-.+. .+|+.+++-....+..+.-...+
T Consensus 176 v~~ll~~~---pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 176 VDQLLEMT---PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHhC---cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 88776542 345667777888888888888888888888888765543 34666666555555555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCC
Q 006981 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS-IKLK 371 (623)
Q Consensus 293 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~ 371 (623)
++..++ .+-+...-.+++.-+.+.|+.++|.++..+..+++..|+.. ..-.+.+.++...-.+..+.-.. .+.
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~- 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPE- 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCC-
Confidence 555443 22345566677777888888888888888888877666521 22234566666666665554433 332
Q ss_pred CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 372 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
+...+.+|...|.+++.+.+|.+.|+...+ ..|+..+|..+..++.+.|+.++|.+..++...
T Consensus 327 -~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 327 -DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred -ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 346777888888888888888888887776 478888888888888888888888888877653
No 53
>PF13041 PPR_2: PPR repeat family
Probab=99.32 E-value=4.2e-12 Score=86.41 Aligned_cols=50 Identities=30% Similarity=0.639 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006981 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (623)
Q Consensus 372 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 421 (623)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777764
No 54
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.32 E-value=1.6e-07 Score=93.80 Aligned_cols=409 Identities=17% Similarity=0.169 Sum_probs=212.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 006981 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQ 113 (623)
Q Consensus 34 ~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 113 (623)
.++++|++..-+..|++.++.-.+.....+....++...+.+-.+-+.+++++-..-++..-+-.|..+++.+++++|.+
T Consensus 111 ~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~ 190 (835)
T KOG2047|consen 111 FLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQ 190 (835)
T ss_pred HHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHH
Confidence 34588888888888888877654444444444555555555656666666666554444445556666666677766666
Q ss_pred HHHHHHHcC------CCCCHHHHHHHHHHHHHcCChhH---HHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHH
Q 006981 114 VLRLVQEAG------LKADCKLYTTLITTCAKSGKVDA---MFEVFHEMVNAGIEPNV--HTYGALIDGCAKAGQVAKAF 182 (623)
Q Consensus 114 ~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~ 182 (623)
.+...+... .+.+...|..+-+..++.-+.-. ...+++.+... -+|. ..|++|.+-|.+.|.+++|.
T Consensus 191 ~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekar 268 (835)
T KOG2047|consen 191 RLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKAR 268 (835)
T ss_pred HHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 665554210 12233334444333333322111 11222222211 1221 24455555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHH------------------------------------------------------
Q 006981 183 GAYGIMRSKNVKPDRVVFNALITACG------------------------------------------------------ 208 (623)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~------------------------------------------------------ 208 (623)
++|++....- .++.-|+.+.++|+
T Consensus 269 Dvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~ 346 (835)
T KOG2047|consen 269 DVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNP 346 (835)
T ss_pred HHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCC
Confidence 5554443321 11222222222222
Q ss_pred ------------ccCCHHHHHHHHHHHhhCCCCCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC--
Q 006981 209 ------------QSGAVDRAFDVLAEMNAEVHPVDPD------HITIGALMKACANAGQVDRAREVYKMIHKYNIKGT-- 268 (623)
Q Consensus 209 ------------~~g~~~~A~~~~~~m~~~~~~~~~~------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-- 268 (623)
..|+..+-...+.+..+. +.|- ...|..+.+.|-+.|+++.|..+|++..+-..+.-
T Consensus 347 ~nV~eW~kRV~l~e~~~~~~i~tyteAv~~---vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~d 423 (835)
T KOG2047|consen 347 HNVEEWHKRVKLYEGNAAEQINTYTEAVKT---VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVED 423 (835)
T ss_pred ccHHHHHhhhhhhcCChHHHHHHHHHHHHc---cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHH
Confidence 123333444444444332 1221 23466667777777888888888877766543322
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----------C-------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 269 -PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI----------P-------DEVFLSALIDFAGHAGKVEAAFEILQEA 330 (623)
Q Consensus 269 -~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~----------p-------~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (623)
..+|-.-..+-.+..+++.|+++.++.....-. | +...|+..++.-...|-++....+++.+
T Consensus 424 La~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdri 503 (835)
T KOG2047|consen 424 LAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRI 503 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 235555556666677777777776665432111 1 1233444555555566777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHc---CCChhhHHHHHHHHHHCCCC
Q 006981 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALITALCD---GDQLPKTMEVLSDMKSLGLC 406 (623)
Q Consensus 331 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~ 406 (623)
.+..+.. +...-.....+.....++++.+++++-...-..|++ ..|+..+.-+.+ ....+.|..+|++.++ |.+
T Consensus 504 idLriaT-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cp 581 (835)
T KOG2047|consen 504 IDLRIAT-PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCP 581 (835)
T ss_pred HHHhcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCC
Confidence 7665432 222222222344555667777777765544334554 456666555443 3357888888888887 666
Q ss_pred CCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 006981 407 PNTITYSILL--VACERKDDVEVGLMLLSQAKEDGVIPN--LVMFKCIIG 452 (623)
Q Consensus 407 p~~~t~~~ll--~a~~~~g~~~~a~~~~~~~~~~g~~p~--~~~~~~li~ 452 (623)
|...-+.-|+ ..--+.|....|+.+++++.. ++++. ...||..|.
T Consensus 582 p~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 582 PEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIK 630 (835)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 6543322222 222345777778888877543 23333 234555553
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.32 E-value=2.3e-09 Score=100.99 Aligned_cols=199 Identities=16% Similarity=0.105 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006981 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206 (623)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 206 (623)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3444555555555556666655555555432 2234455555555555555555555555555442 2233444455555
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 006981 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (623)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (623)
+...|++++|.+.+.+..... ........+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 555555555555555554320 111122233444445555555555555555554443 223344445555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (623)
Q Consensus 287 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (623)
+|...+++..... ..+...+..+...+...|+.++|..+.+.+
T Consensus 187 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 187 DARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555555544431 123333334444444445555554444443
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.31 E-value=2.5e-09 Score=113.68 Aligned_cols=249 Identities=12% Similarity=-0.003 Sum_probs=178.0
Q ss_pred hHHHHHHHHHhhhCC---CCCHHHHHHHHHHHH---------cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 006981 74 QKAIKEAFRFFKLVP---NPTLSTFNMLMSVCA---------SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141 (623)
Q Consensus 74 ~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~---------~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 141 (623)
.+++++|+.+|++.. +.+...|..+..++. ..+++++|...+++..+.. +.+...+..+...+...|
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 466889999998764 334556655554433 2345789999999999875 557888888888999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006981 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221 (623)
Q Consensus 142 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 221 (623)
++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.... +...+..++..+...|++++|...+.
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999999999875 445778888899999999999999999999887422 22333344555667899999999999
Q ss_pred HHhhCCCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C
Q 006981 222 EMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-G 299 (623)
Q Consensus 222 ~m~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~ 299 (623)
+..... .|+ ...+..+..++...|+.++|...+.++.... +.+....+.+...|...| +.|...++.+.+. .
T Consensus 431 ~~l~~~---~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 431 ELRSQH---LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHhc---cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 887531 243 4456677788889999999999998876553 334556677777777777 4777777776653 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006981 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (623)
Q Consensus 300 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (623)
..|....+..+ .+.-.|+-+.+..+ +++.+.+
T Consensus 505 ~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 505 RIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhhcCchHHHH--HHHHHhhhHHHHHH-HHhhccc
Confidence 22322333333 34455676666666 7777664
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.3e-08 Score=100.17 Aligned_cols=368 Identities=11% Similarity=0.061 Sum_probs=258.7
Q ss_pred hhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHcCChhHHH
Q 006981 72 KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL----KADCKLYTTLITTCAKSGKVDAMF 147 (623)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~----~~~~~~~~~li~~~~~~g~~~~A~ 147 (623)
......++|...|.+....|+..|.++...-.. ..-.+.+.++.+..... ..+......+.....-...-+...
T Consensus 152 ~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~ 229 (611)
T KOG1173|consen 152 VALDNREEARDKYKEALLADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESL 229 (611)
T ss_pred hhhccHHHHHHHHHHHHhcchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccccc
Confidence 344557788888887776777766665543322 12223333333332111 112222222222221011001111
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 006981 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (623)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 227 (623)
..-.+-.-.+...+......-..-+-..+++.+..++++...+.. ++....+..-|.++...|+..+-..+=.++.+.
T Consensus 230 ~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~- 307 (611)
T KOG1173|consen 230 TRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL- 307 (611)
T ss_pred ccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-
Confidence 111111112334566666667777788999999999999998774 666777777788899999988877777777753
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC-CCCH
Q 006981 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GV-IPDE 304 (623)
Q Consensus 228 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~-~p~~ 304 (623)
.+....+|-++.--|...|+..+|++.|.+....+ +.-...|-.+...|.-.|..+.|...+...-+. |. .|
T Consensus 308 --yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP-- 382 (611)
T KOG1173|consen 308 --YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP-- 382 (611)
T ss_pred --CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch--
Confidence 34557789999988888999999999999987665 333468999999999999999999988776553 32 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC--CCHHHHH
Q 006981 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS----IKLK--PTVSTMN 378 (623)
Q Consensus 305 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~--~~~~~~~ 378 (623)
+--+.--|.+.+..+.|.+.|.+..... +.|+.+.+-+.....+.+.+.+|...|+.... .+.+ .-..+++
T Consensus 383 --~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 383 --SLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLN 459 (611)
T ss_pred --HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence 2233445788999999999999988764 56788888888888889999999999987762 1111 1344678
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (623)
Q Consensus 379 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (623)
.|.++|.+.+.+++|+..+++.+.. .+-|..|++++.-.+...|+++.|...|.+.+. +.|+..+...++..+
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 8899999999999999999998875 244888999999999999999999999998775 789998888887654
No 58
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.28 E-value=9.1e-10 Score=113.27 Aligned_cols=253 Identities=18% Similarity=0.175 Sum_probs=181.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 006981 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (623)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 227 (623)
.++-.+...|+.||.+||.++|.-||..|+.+.|- +|.-|..+..+.+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45677888999999999999999999999999998 9999988888888999999999999888876543
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHH---HHHHHHHHH----hcCCCCCHHHH---------------HHHHHHHHhcCCH
Q 006981 228 HPVDPDHITIGALMKACANAGQVDR---AREVYKMIH----KYNIKGTPEVY---------------TIAINCCSQTGDW 285 (623)
Q Consensus 228 ~~~~~~~~~~~~ll~~~~~~g~~~~---A~~~~~~~~----~~~~~~~~~~~---------------~~li~~~~~~g~~ 285 (623)
.|...+|..|..+|...||+.. ..+.+..+. ..|+ .....| ...+.-....|.+
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gv-gs~e~~fl~k~~c~p~~lpda~n~illlv~eglw 155 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGV-GSPERWFLMKIHCCPHSLPDAENAILLLVLEGLW 155 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhcc-CcHHHHHHhhcccCcccchhHHHHHHHHHHHHHH
Confidence 4666799999999999999765 222111111 1121 111111 1223333444556
Q ss_pred HHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 286 EFACSVYDDMTKKGV-IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364 (623)
Q Consensus 286 ~~A~~l~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 364 (623)
+.+++++..+..... .|..+ ++.-+..... -..++........-.|+..+|..++++-...|+.+.|..++..
T Consensus 156 aqllkll~~~Pvsa~~~p~~v----fLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHHHhhCCcccccchHHH----HHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 666666655543311 12111 2333332222 2223333222221258999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006981 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424 (623)
Q Consensus 365 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 424 (623)
|.+.|++.+...|..|+-+ .+...-+..+++.|.+.|+.|+..|+...+..|...|.
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999998888888888777 78888888999999999999999999999888888665
No 59
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=1.2e-11 Score=84.15 Aligned_cols=50 Identities=36% Similarity=0.658 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006981 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (623)
Q Consensus 160 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (623)
||..+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=5.2e-09 Score=98.58 Aligned_cols=202 Identities=15% Similarity=0.056 Sum_probs=167.7
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (623)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 35677888889999999999999999998764 5567788889999999999999999999998765 446678888899
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCC
Q 006981 171 GCAKAGQVAKAFGAYGIMRSKNV-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249 (623)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~ 249 (623)
.+...|++++|.+.|++...... ......+..+...+...|++++|.+.+.+..... +.+...+..+...+...|+
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID---PQRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCChHHHHHHHHHHHHcCC
Confidence 99999999999999999986532 2234567778888999999999999999987642 3345678888899999999
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 250 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
+++|...+++..+.. +.+...+..+...+...|+.++|..+.+.+...
T Consensus 185 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 185 YKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999988773 556777888889999999999999988877653
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.26 E-value=1e-08 Score=109.07 Aligned_cols=249 Identities=13% Similarity=0.054 Sum_probs=136.8
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH
Q 006981 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK---------AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213 (623)
Q Consensus 143 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 213 (623)
+++|.+.|++..+.. +.+...|..+..+|.. .+++++|...+++..+.. +-+...+..+...+...|++
T Consensus 277 ~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 277 LQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 456777777766552 2233445444443331 233667777777776653 33455666666666677777
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006981 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (623)
Q Consensus 214 ~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 293 (623)
++|...|++..+.. +.+...+..+...+...|++++|...+++..+.+ +.+...+..++..+...|++++|...++
T Consensus 355 ~~A~~~~~~Al~l~---P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 355 IVGSLLFKQANLLS---PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 77777777766531 2234455666666777777777777777776664 2233333334444555677777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC
Q 006981 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-KLKP 372 (623)
Q Consensus 294 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~ 372 (623)
+.......-+...+..+..++...|+.++|...+.++.... +.+....+.+...|.+.| ++|...++.+.+. ...+
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 76654321133345555566667777777777776654432 223334444555556555 3566655555431 1122
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHC
Q 006981 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (623)
Q Consensus 373 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 403 (623)
....+..++ |.-.|+-+.+..+ +++.+.
T Consensus 508 ~~~~~~~~~--~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 508 NNPGLLPLV--LVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cCchHHHHH--HHHHhhhHHHHHH-HHhhcc
Confidence 222233333 3335555555444 666554
No 62
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=3.7e-08 Score=97.06 Aligned_cols=287 Identities=14% Similarity=0.052 Sum_probs=213.8
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006981 123 LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202 (623)
Q Consensus 123 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 202 (623)
...+......-.+-+...+++.+..++++.+.+.. +++...+..-|.++.+.|+..+-..+=.+|.+. .+-...+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhh
Confidence 34566666667777778888999999988888764 566667777777888888888777777777765 2445778888
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 006981 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (623)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (623)
+.--|...|...+|++.|.+...-+..+ ...|-.....|+-.|..++|...+..+-+.= +....-+--+.--|.+.
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~f---gpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t 393 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPTF---GPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRT 393 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCccc---cHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHh
Confidence 8888888899999999988876433223 2367778888888888888888887665531 11111122233457778
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C--CCCCHHHHHHHHHHHHhcCCHH
Q 006981 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----G--ISVGIISYSSLMGACSNAKNWQ 356 (623)
Q Consensus 283 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~g~~~ 356 (623)
++.+.|.+.|.+.....+. |+..++-+.-.....+.+.+|..+|+..... + ...-..+++.|.++|.+++.++
T Consensus 394 ~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred ccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 8888999988887765332 5566666666666678888898888877622 1 0113456889999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (623)
Q Consensus 357 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 419 (623)
+|+..|++..... +.+..++.++.-.|...|+++.|.+.|.+.+. +.||..+.+.++..+
T Consensus 473 eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 473 EAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 9999999988764 56889999999999999999999999999886 689998888888643
No 63
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.19 E-value=2.3e-06 Score=86.08 Aligned_cols=397 Identities=14% Similarity=0.130 Sum_probs=245.1
Q ss_pred HHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHH
Q 006981 29 LHSYNRLI---RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVC 102 (623)
Q Consensus 29 ~~~~~~l~---~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~ 102 (623)
...+...+ ..+++..-+.+.+.+.+.. |......++.+-.....|+.++|........ ..+.++|..+.-.+
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 34455555 4678888888888888854 4555555555545555688899988887654 45778999999888
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006981 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182 (623)
Q Consensus 103 ~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 182 (623)
....++++|+..++.....+ +-|...+.-+.-.-++.|+++-.......+.+.. +.....|..+..++.-.|+...|.
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999876 6677788877777788899988888877777653 335667888888899999999999
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHH------HHHHccCCHHHHHHHHHHHhhCCCCCCCCHHH-HHHHHHHHHHcCChHHHH
Q 006981 183 GAYGIMRSKN-VKPDRVVFNALI------TACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT-IGALMKACANAGQVDRAR 254 (623)
Q Consensus 183 ~~~~~m~~~g-~~p~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~A~ 254 (623)
.+.++..+.. -.|+...+.-.. ....+.|..++|.+.+..-... ..|... -..-...+.+.+++++|.
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~----i~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ----IVDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH----HHHHHHHhhhHHHHHHHHhhHHhHH
Confidence 9999888764 246666554332 2345668888888877654321 223222 334556788899999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHH----------------------------------HhCC
Q 006981 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC-SVYDDM----------------------------------TKKG 299 (623)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~l~~~m----------------------------------~~~~ 299 (623)
.++..+..++ +.+..-|-.+..++.+-.+.-++. .+|... .+.|
T Consensus 240 ~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 240 KVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 9999998875 333333333444443222222222 333333 3333
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC----------CCCCHHHH--HHHHHHHHhcCCHHHHHHHHH
Q 006981 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN----QG----------ISVGIISY--SSLMGACSNAKNWQKALELYE 363 (623)
Q Consensus 300 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~----------~~~~~~~~--~~li~~~~~~g~~~~A~~~~~ 363 (623)
+.+ ++..+.+.|-.....+-..++...+.. .| -+|....| ..++..|-+.|+++.|....+
T Consensus 319 ~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 319 VPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred CCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 322 222222222211111111111111110 00 13333333 345556667777777777777
Q ss_pred HHHhCCCCCCH-HHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006981 364 HMKSIKLKPTV-STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440 (623)
Q Consensus 364 ~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~ 440 (623)
...++ .|+. ..|..-.+.+...|.+++|...+++..+.. .||...=+--..-..++.+.++|.++.....+.|.
T Consensus 396 ~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 396 LAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 66654 3443 234444566667777777777777766543 34444433444444566777777777776666553
No 64
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=3.8e-07 Score=88.43 Aligned_cols=201 Identities=15% Similarity=0.129 Sum_probs=135.8
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006981 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323 (623)
Q Consensus 244 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 323 (623)
+.-.|+.-.|..-|+...+.... +...|-.+...|....+.++-...|.+..+.+.. |..+|..-...+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 34567888888888888877633 3334777777888888888888888888876553 445555555566666788888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHC
Q 006981 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (623)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 403 (623)
..=|++.+... +-+...|-.+..+..+.+.++++...|++.++. ++.-+..|+.....+...+++++|.+.|+..++.
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 88888887764 335566666666667888888888888887754 2344677888888888888888888888887652
Q ss_pred CCCCC-------HHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 006981 404 GLCPN-------TITY--SILLVACERKDDVEVGLMLLSQAKEDGVIPNLV-MFKCIIGM 453 (623)
Q Consensus 404 g~~p~-------~~t~--~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~-~~~~li~~ 453 (623)
.|+ ..++ -.++ .+.-.+++..|.+++++.++ ++|.-. .|-+|-.+
T Consensus 492 --E~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~ 546 (606)
T KOG0547|consen 492 --EPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQF 546 (606)
T ss_pred --ccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHH
Confidence 333 2221 1122 12234788888888888876 344332 34444443
No 65
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.15 E-value=4.5e-07 Score=93.37 Aligned_cols=290 Identities=14% Similarity=0.139 Sum_probs=168.3
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHcc--
Q 006981 135 TTCAKSGKVDAMFEVFHEMVNAGIEPN-VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN-ALITACGQS-- 210 (623)
Q Consensus 135 ~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~~~~-- 210 (623)
..+...|++++|++.++.-... -+| ..........+.+.|+.++|..+|..++..+ |+...|. .+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 3345556666666666554332 223 3334455556666666666666666666653 3333333 333333111
Q ss_pred ---CCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 006981 211 ---GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (623)
Q Consensus 211 ---g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (623)
.+.+...++++++... -|......-+.-.+..-..+ ..+...+..+...|+| .+++.+-..|....+.+
T Consensus 88 ~~~~~~~~~~~~y~~l~~~----yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEK----YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAA 160 (517)
T ss_pred cccccHHHHHHHHHHHHHh----CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHH
Confidence 2345555666665442 12211111111111111112 2344445555666653 46666666666555555
Q ss_pred HHHHHHHHHHhC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006981 287 FACSVYDDMTKK----G----------VIPDE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (623)
Q Consensus 287 ~A~~l~~~m~~~----~----------~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 350 (623)
-..+++...... + -.|.. .++..+...|...|++++|+++.+..+++. +..+..|..-...|-
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilK 239 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 555555554321 1 12333 344556677788888999998888888874 333677788888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHH------HH--HHHHHHHHhc
Q 006981 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI------TY--SILLVACERK 422 (623)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~------t~--~~ll~a~~~~ 422 (623)
+.|++++|.+.++...+... -|...-+-.+.-+.++|+.++|.+++....+.+..|-.. .| .....+|.+.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 89999999888888887653 355566666777888899999988888887766544221 12 2334678889
Q ss_pred CCHHHHHHHHHHHHH
Q 006981 423 DDVEVGLMLLSQAKE 437 (623)
Q Consensus 423 g~~~~a~~~~~~~~~ 437 (623)
|++..|++-|..+.+
T Consensus 319 ~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 319 GDYGLALKRFHAVLK 333 (517)
T ss_pred hhHHHHHHHHHHHHH
Confidence 998888887777654
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=7.5e-09 Score=94.83 Aligned_cols=229 Identities=15% Similarity=0.012 Sum_probs=110.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006981 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280 (623)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 280 (623)
+.+.++|.+.|.+.+|.+.|..-... .|-..||..|-++|.+..+++.|+.++.+-.+. ++.++....-+...+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHH
Confidence 34445555555555555555444432 233334445555555555555555555554443 1233333333444444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006981 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360 (623)
Q Consensus 281 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 360 (623)
..++.++|.++++...+.... ++.....+...|.-.++.+.|+.+++++.+-|+. ++..|+.+.-+|.-.+++|-++.
T Consensus 302 am~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 555555555555555544321 3344444444444555555555555555555532 34455555555555555555555
Q ss_pred HHHHHHhCCCCCC--HHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 361 LYEHMKSIKLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 361 ~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
-|++....--.|+ ...|-.+-......|++.-|.+.|+-.+..+ .-....++.|.-.-.+.|++++|+.+++....
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 5555443222222 2334444444455555555555555555432 12344455555445555666666655555443
No 67
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=1.4e-05 Score=79.80 Aligned_cols=416 Identities=15% Similarity=0.129 Sum_probs=237.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHH--HHHHH--HcC
Q 006981 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNM--LMSVC--ASS 105 (623)
Q Consensus 30 ~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--li~~~--~~~ 105 (623)
...|...++|++++|.+...++...+ |.+......-.-...+.+.+++|+.+.+.-... .+++. +=.+| .+.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHc
Confidence 34677779999999999999999887 333332222222344668899999776654321 11121 23343 467
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 006981 106 KDSEGAFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP-NVHTYGALIDGCAKAGQVAKAFG 183 (623)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~ 183 (623)
+..++|+..+. |..+ |..+...-...+.+.|++++|..+|..+.+.+.+- +...-..++..-. ...+.
T Consensus 93 nk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~- 162 (652)
T KOG2376|consen 93 NKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ- 162 (652)
T ss_pred ccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-
Confidence 88999998887 3333 34466666778889999999999999997664221 1111111111111 01111
Q ss_pred HHHHHHhCCCCCCHHHHHHHH---HHHHccCCHHHHHHHHHHHhh--------CCCC---CCCCHH-HHHHHHHHHHHcC
Q 006981 184 AYGIMRSKNVKPDRVVFNALI---TACGQSGAVDRAFDVLAEMNA--------EVHP---VDPDHI-TIGALMKACANAG 248 (623)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~--------~~~~---~~~~~~-~~~~ll~~~~~~g 248 (623)
.+......| ..+|..+. -.+...|++.+|++++....+ ...+ +..+.. .-.-|.-++-..|
T Consensus 163 ---~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 163 ---LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred ---HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 122221122 22333333 234556777788777776621 1000 000111 1122344556677
Q ss_pred ChHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHh-------------------------------------------
Q 006981 249 QVDRAREVYKMIHKYNIKGTPE----VYTIAINCCSQ------------------------------------------- 281 (623)
Q Consensus 249 ~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~------------------------------------------- 281 (623)
+.++|..++..+.+.+. +|.. .-|.++..-..
T Consensus 239 qt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred chHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887777777652 2221 11222111100
Q ss_pred --cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006981 282 --TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH--AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357 (623)
Q Consensus 282 --~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 357 (623)
.+..+.+.++..... +..|. ..+..++..+.+ ......+.+++....+....-...+.-..+......|+++.
T Consensus 318 l~tnk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 318 LFTNKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred HHhhhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH
Confidence 011111111111111 22233 334444444332 22466777777776665433335566777788899999999
Q ss_pred HHHHHH--------HHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHC--CCCCCHHHHHHHH----HHHHhcC
Q 006981 358 ALELYE--------HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL--GLCPNTITYSILL----VACERKD 423 (623)
Q Consensus 358 A~~~~~--------~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll----~a~~~~g 423 (623)
|.+++. .+.+.+..|-.+ .++...+.+.++.+.|..++.+.... .-.+......+++ .--.+.|
T Consensus 395 A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 999999 666665555544 45677788888888788888776541 0122223333333 3335679
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cHHHHHHhhHhhhh
Q 006981 424 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-RYEKARTLNEHVLS 470 (623)
Q Consensus 424 ~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~-~~~~a~~~~~~~~~ 470 (623)
+-++|..+++++.+.. .+|..+...+|.+|++ ..++|..+...+..
T Consensus 473 ~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d~eka~~l~k~L~p 519 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLDPEKAESLSKKLPP 519 (652)
T ss_pred chHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcCHHHHHHHhhcCCC
Confidence 9999999999999852 5788889999999998 77888888766544
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=7.3e-09 Score=94.88 Aligned_cols=233 Identities=14% Similarity=0.084 Sum_probs=173.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH
Q 006981 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245 (623)
Q Consensus 166 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~ 245 (623)
+.+.++|.+.|.+.+|.+.|+.-.+. .|-+.||..|-+.|.+..+...|+.++.+-... ++-|+....-+.+.+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~---fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS---FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---CCchhhhhhhhHHHHH
Confidence 56778888888888888888877766 566677777888888888888888888877653 2333333445667777
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006981 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325 (623)
Q Consensus 246 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 325 (623)
..++.++|.++++...+.. +.++.+...+...|.-.++++.|++.++++++.|+. +...|..+.-+|.-.++++-++.
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 7888888888888887765 556667777777788888888888888888888876 66777777777777888888888
Q ss_pred HHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHC
Q 006981 326 ILQEAKNQGISVG--IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (623)
Q Consensus 326 ~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 403 (623)
-|.+....-..|+ ..+|..|-......|++..|.+.|+-...++ ..+...+|.|.-.-.+.|++++|..+++....
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s- 457 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS- 457 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh-
Confidence 8887766533333 4567777777778888888888888777654 23567788887777888888888888887765
Q ss_pred CCCCC
Q 006981 404 GLCPN 408 (623)
Q Consensus 404 g~~p~ 408 (623)
+.|+
T Consensus 458 -~~P~ 461 (478)
T KOG1129|consen 458 -VMPD 461 (478)
T ss_pred -hCcc
Confidence 3454
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2.3e-06 Score=81.35 Aligned_cols=308 Identities=12% Similarity=0.028 Sum_probs=193.2
Q ss_pred CCCCHHHHHHHHHHHHHc--CChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 006981 123 LKADCKLYTTLITTCAKS--GKVDAMFEVFHEMVNA-GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199 (623)
Q Consensus 123 ~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 199 (623)
++|...+...-+.+++.+ ++...|...+-.+... -++-|+.....+...+...|+..+|...|++.... .|+..+
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~ 267 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVE 267 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhh
Confidence 344444444455555443 4444444444443332 24567778888888888888888888888887755 333222
Q ss_pred -HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 006981 200 -FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278 (623)
Q Consensus 200 -~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 278 (623)
.....-.+.+.|+.+....+...+.... +-....|-.-........++..|+.+-++..+.+ +.+...+-.-...
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~---~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~l 343 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKV---KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRL 343 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhh---hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHH
Confidence 1111223456677777777766665421 1222223333333445667788888877777665 4444555555666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHH
Q 006981 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACS-NAKNWQ 356 (623)
Q Consensus 279 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~~ 356 (623)
+.+.+++++|.-.|+..+.... -+...|.-++..|...|++.+|.-+-+...+. ++.+..+.+.+. ..|. ...--+
T Consensus 344 L~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rE 421 (564)
T KOG1174|consen 344 LIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMRE 421 (564)
T ss_pred HHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHH
Confidence 7778888888888888776532 26678888888888888888887776665543 233444444331 2222 222346
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 357 KALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (623)
Q Consensus 357 ~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 435 (623)
+|.++++.-... .|+ ....+.+...+...|..++++.+++.... ..||....+.|.+.+.....++++...|...
T Consensus 422 KAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 422 KAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred HHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 777777776654 344 34556666777788888888888888776 3788888888888888888888888888777
Q ss_pred HHCCCCCCH
Q 006981 436 KEDGVIPNL 444 (623)
Q Consensus 436 ~~~g~~p~~ 444 (623)
.. +.|+.
T Consensus 498 Lr--~dP~~ 504 (564)
T KOG1174|consen 498 LR--QDPKS 504 (564)
T ss_pred Hh--cCccc
Confidence 66 44543
No 70
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.10 E-value=2.8e-07 Score=94.85 Aligned_cols=264 Identities=14% Similarity=0.118 Sum_probs=147.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006981 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS-----GKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (623)
Q Consensus 94 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~l 168 (623)
........+.+.|+.++|..+++.+.+.+ +.|..-|..+..+..-. .+.+...++|+++... -|...+...+
T Consensus 40 ~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl 116 (517)
T PF12569_consen 40 VLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEK--YPRSDAPRRL 116 (517)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHh--CccccchhHh
Confidence 34445566777788888888888887775 33444444455444222 2456667777777654 2333333222
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC------------CCCCCCH-
Q 006981 169 IDGCAKAGQV-AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV------------HPVDPDH- 234 (623)
Q Consensus 169 i~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------------~~~~~~~- 234 (623)
.-.+..-..+ ..+...+..+..+|++ .+|+.|-..|......+-..+++....... ..-+|..
T Consensus 117 ~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~ 193 (517)
T PF12569_consen 117 PLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTL 193 (517)
T ss_pred hcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHH
Confidence 2222221222 2344455566666753 455555555665555444445554443210 0112333
Q ss_pred -HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006981 235 -ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (623)
Q Consensus 235 -~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~ 313 (623)
.++..+...|...|++++|+...++..+.. |..+..|..-...|-+.|++.+|.+.++.....+.. |...-+..+..
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy 271 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHH
Confidence 233455566677777777777777777664 444666777777777777777777777777766554 66666666667
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 314 AGHAGKVEAAFEILQEAKNQGISVGIIS--------YSSLMGACSNAKNWQKALELYEHM 365 (623)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------~~~li~~~~~~g~~~~A~~~~~~m 365 (623)
+.++|+.++|.+++....+.+..|.... ......+|.+.|++..|++.|..+
T Consensus 272 ~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 272 LLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 7777777777777776665543221111 122334455555555555544444
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.08 E-value=2.3e-07 Score=94.26 Aligned_cols=240 Identities=16% Similarity=0.126 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhC---CCC-CCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHhc-----C--
Q 006981 197 RVVFNALITACGQSGAVDRAFDVLAEMNAE---VHP-VDPDHIT-IGALMKACANAGQVDRAREVYKMIHKY-----N-- 264 (623)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~-~~~~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~-- 264 (623)
..+...+...|...|+++.|..++....+. ..| ..|.+.+ .+.+...|...+++++|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666888899999999999988876542 112 1233333 234667888899999999999887653 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C
Q 006981 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVI-PDE-VFLSALIDFAGHAGKVEAAFEILQEAKNQ---G 334 (623)
Q Consensus 265 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~~-p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~ 334 (623)
.+.-..+++.|...|.+.|++++|...++...+ .|.. |.+ .-++.+...|+..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 111234677777889999999888888776543 1221 222 23566667788889999999988876542 1
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC---CCCHHHHHHHHHHHHcCCChhhHHHHHHHHH--
Q 006981 335 ISV----GIISYSSLMGACSNAKNWQKALELYEHMKSI----KL---KPTVSTMNALITALCDGDQLPKTMEVLSDMK-- 401 (623)
Q Consensus 335 ~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~-- 401 (623)
..+ -..+++.|...|.+.|++++|.++|+...+. +- .-....++.|...|.+.++..+|.++|.+..
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 112 2457888999999999999999999887642 11 1123457778888899999999998888743
Q ss_pred --HCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 402 --SLGL-CPN-TITYSILLVACERKDDVEVGLMLLSQAK 436 (623)
Q Consensus 402 --~~g~-~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (623)
..|. .|+ ..+|..|...|...|+++.|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3331 222 4568888899999999999999888775
No 72
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.07 E-value=3.3e-07 Score=93.17 Aligned_cols=170 Identities=13% Similarity=0.142 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-
Q 006981 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNA-----GI-EPNVH-TYGALIDGCAKAGQVAKAFGAYGIMRSK-----NV- 193 (623)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~- 193 (623)
..+...|...|...|+++.|..+++...+. |. .|... ..+.+...|...+++.+|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 445666888888888888888888877653 21 12222 2334566777777777777777777542 21
Q ss_pred CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhC---CCCC-CCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcC---
Q 006981 194 KP-DRVVFNALITACGQSGAVDRAFDVLAEMNAE---VHPV-DPDHI-TIGALMKACANAGQVDRAREVYKMIHKYN--- 264 (623)
Q Consensus 194 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~-~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--- 264 (623)
.| -..+++.|..+|.+.|++++|...+++.... ..+. .|.+. .++.+...|+..+++++|..+++...+.-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 11 1345566666777777777766666554321 0011 12211 23444555666666666666665443320
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 265 IKG----TPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (623)
Q Consensus 265 ~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (623)
+.+ -..+++.|...|.+.|++++|.++|++..
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai 394 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAI 394 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 011 12345555666666666666666655544
No 73
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.07 E-value=1.3e-05 Score=80.93 Aligned_cols=207 Identities=13% Similarity=0.157 Sum_probs=124.8
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CC----------CCCCHH--HHHHHHHHHHh
Q 006981 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK----KG----------VIPDEV--FLSALIDFAGH 316 (623)
Q Consensus 253 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~~----------~~p~~~--~~~~li~~~~~ 316 (623)
...++....+.|++ .++..+.+.|-.....+-..++.-.+.. .| -.|... ++..++..+-+
T Consensus 307 vdkyL~~~l~Kg~p---~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~ 383 (700)
T KOG1156|consen 307 VDKYLRPLLSKGVP---SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDK 383 (700)
T ss_pred HHHHHHHHhhcCCC---chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHH
Confidence 33444555566654 3555555555443333322222222221 11 134443 44567778889
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHH
Q 006981 317 AGKVEAAFEILQEAKNQGISVG-IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395 (623)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 395 (623)
.|+++.|..+++....+- |+ +..|..=.+.+...|++++|..++++..+.. .+|...-.--..=..+.++.++|.+
T Consensus 384 ~g~~~~A~~yId~AIdHT--PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~ 460 (700)
T KOG1156|consen 384 LGDYEVALEYIDLAIDHT--PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEE 460 (700)
T ss_pred cccHHHHHHHHHHHhccC--chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHH
Confidence 999999999999988763 43 3455555688899999999999999998755 3454433344455567899999999
Q ss_pred HHHHHHHCCCCCCHHH--------HHHH--HHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcHHH
Q 006981 396 VLSDMKSLGLCPNTIT--------YSIL--LVACERKDDVEVGLMLLSQAKED-----GVIPNLVMFKCIIGMCSRRYEK 460 (623)
Q Consensus 396 l~~~m~~~g~~p~~~t--------~~~l--l~a~~~~g~~~~a~~~~~~~~~~-----g~~p~~~~~~~li~~~~~~~~~ 460 (623)
+.....+.|. +... |-.+ ..+|.+.|++..|++=|..+.+. ...-|..+| |+=++-.|.|-+
T Consensus 461 ~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhty-c~rk~tlrsYv~ 537 (700)
T KOG1156|consen 461 VLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTY-CMRKGTLRSYVE 537 (700)
T ss_pred HHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHH-HHhcCcHHHHHH
Confidence 9999888775 3332 2222 25678888888887766665442 122333333 333333334555
Q ss_pred HHHhhHhh
Q 006981 461 ARTLNEHV 468 (623)
Q Consensus 461 a~~~~~~~ 468 (623)
-.++.+..
T Consensus 538 ll~~~d~L 545 (700)
T KOG1156|consen 538 LLEWEDNL 545 (700)
T ss_pred HHHHHHhh
Confidence 55555543
No 74
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=3.1e-06 Score=78.91 Aligned_cols=403 Identities=10% Similarity=0.067 Sum_probs=233.9
Q ss_pred hHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcC
Q 006981 28 QLHSYNRLI--RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASS 105 (623)
Q Consensus 28 ~~~~~~~l~--~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 105 (623)
++..|=..+ +.|++++|+..+.-+...+-.+.. +...+.-..--.|.+.+|..+-.+.+. ++..-..+....-+.
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~e--l~vnLAcc~FyLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAE--LGVNLACCKFYLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHKL 134 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcc--cchhHHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHh
Confidence 444554443 677777777777766554422211 111121111224666666666555542 233333444555556
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHH
Q 006981 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL-IDGCAKAGQVAKAFGA 184 (623)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~ 184 (623)
++-++-..+.+.+... ..--.+|.+.....-.+.+|+++|...... .|+-...|.- .-+|.+..-++-+.++
T Consensus 135 ndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqev 207 (557)
T KOG3785|consen 135 NDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEV 207 (557)
T ss_pred CcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHH
Confidence 6666666555555432 122334555555556678888888888865 3555555543 3456677777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcc--CCH---------------------------------HHHHHHHHHHhhCCCC
Q 006981 185 YGIMRSKNVKPDRVVFNALITACGQS--GAV---------------------------------DRAFDVLAEMNAEVHP 229 (623)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~--g~~---------------------------------~~A~~~~~~m~~~~~~ 229 (623)
++-..+. ++.++...|....-..+. |+. +.|++++--+..
T Consensus 208 l~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~---- 282 (557)
T KOG3785|consen 208 LKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK---- 282 (557)
T ss_pred HHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh----
Confidence 7766654 222333444333222221 221 111111111110
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 006981 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV-----YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304 (623)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 304 (623)
.-| ..-..|+--|.+.+++.+|..+.+.+.-. .|-... +.++..-.....+..-|.+.|+-.-.++..-|.
T Consensus 283 ~IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDT 358 (557)
T KOG3785|consen 283 HIP--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDT 358 (557)
T ss_pred hCh--HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccccc
Confidence 011 12334555688999999999988876532 222222 222222222334466777877766655543332
Q ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHH
Q 006981 305 V-FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA-LIT 382 (623)
Q Consensus 305 ~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-li~ 382 (623)
. .-.++.+.+.-..++++.+-++..+..--...|...+ .+..+++..|++.+|.++|-++....+ .|..+|.+ |.+
T Consensus 359 IpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LAr 436 (557)
T KOG3785|consen 359 IPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLAR 436 (557)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHH
Confidence 1 1234444555556788888888888765444444444 477899999999999999998875444 35556654 567
Q ss_pred HHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006981 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL-LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (623)
Q Consensus 383 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 456 (623)
+|.+++.++-|.+++-++.. +.+..+...+ ..-|.+.+.+--|-+.|..+.. .+|++.-|..=-.+|..
T Consensus 437 Cyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWeGKRGACaG 506 (557)
T KOG3785|consen 437 CYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWEGKRGACAG 506 (557)
T ss_pred HHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccCCccchHHH
Confidence 89999999999887765542 3344444444 4679999999999999998877 56887777766666655
No 75
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=3.6e-06 Score=78.46 Aligned_cols=443 Identities=13% Similarity=0.100 Sum_probs=266.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCh
Q 006981 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (623)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~ 108 (623)
..-++.+.++..|+.+++--...+- .....+..-++..+-..|++++|...+..+. .++...+-.|.-...-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 5567889999999999987664442 1222344444555567799999999998654 45666666666666667888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (623)
.+|.++-... +.++..-..|.....+.++-++-..+...+.+ ...---+|.+..-..-.+++|++++.+.
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9998876554 33455556677777888888888877777753 2233445666655667889999999999
Q ss_pred HhCCCCCCHHHHHHHH-HHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc--CChHHHH--H--------
Q 006981 189 RSKNVKPDRVVFNALI-TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA--GQVDRAR--E-------- 255 (623)
Q Consensus 189 ~~~g~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~--g~~~~A~--~-------- 255 (623)
... .|+-...|.-+ -+|.+..-++-+.+++.-..+. ++.+....|.......+. |+..+++ .
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q---~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ---FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE 252 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh---CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc
Confidence 876 45666666544 4566777778788887776654 233344444443333322 2211111 0
Q ss_pred --HHHHHHhcCC------------CC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-H
Q 006981 256 --VYKMIHKYNI------------KG-----TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA-G 315 (623)
Q Consensus 256 --~~~~~~~~~~------------~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~-~ 315 (623)
.-+.+.+.++ -| -+...-.|+-.|.+.++..+|..+.+++.- ..|-......++.+. .
T Consensus 253 ~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalG 330 (557)
T KOG3785|consen 253 YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALG 330 (557)
T ss_pred chhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhh
Confidence 1111111110 01 123445567778899999999998777643 234444433333321 1
Q ss_pred ----hcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 006981 316 ----HAGKVEAAFEILQEAKNQGISVGII-SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390 (623)
Q Consensus 316 ----~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 390 (623)
....+.-|.+.|+..-..+..-|.. ---++...+.-..++++.+..++.+...-...|...+| +..+++..|.+
T Consensus 331 Qe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny 409 (557)
T KOG3785|consen 331 QETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNY 409 (557)
T ss_pred hhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcCh
Confidence 1123556677776665554433322 22344455556677899999888888755555666665 78899999999
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcHHHHHHhhHhhh
Q 006981 391 PKTMEVLSDMKSLGLCPNTITYSILL-VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVL 469 (623)
Q Consensus 391 ~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~ 469 (623)
.+|.++|-......+ .|..+|.+++ ++|.+.+.++.|+.++ ++..-..+..+.--+| +...-+|+++.-+..
T Consensus 410 ~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlI---An~CYk~~eFyyaaK 482 (557)
T KOG3785|consen 410 VEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLI---ANDCYKANEFYYAAK 482 (557)
T ss_pred HHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 999999977664333 3677777655 6778899999987766 4433333333333333 221223444444444
Q ss_pred hccCC--CccchhhhhHH---HHHHHHHHHHcCCCC
Q 006981 470 SFNSG--RPQIENKWTSL---ALMVYREAIVAGTIP 500 (623)
Q Consensus 470 ~~~~~--~~~~~~~~~~~---a~~~~~~m~~~g~~p 500 (623)
.|+.. ..+.+..|... ...+|+.+......|
T Consensus 483 AFd~lE~lDP~pEnWeGKRGACaG~f~~l~~~~~~~ 518 (557)
T KOG3785|consen 483 AFDELEILDPTPENWEGKRGACAGLFRQLANHKTDP 518 (557)
T ss_pred hhhHHHccCCCccccCCccchHHHHHHHHHcCCCCC
Confidence 44432 23334456542 445666554433333
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.99 E-value=2.3e-07 Score=90.31 Aligned_cols=196 Identities=12% Similarity=0.043 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (623)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (623)
..|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|.+.|++..+.. +.+..+|..+...+
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 345566666667777777777777776654 4456677777777777777777777777776653 22455666666666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHH
Q 006981 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (623)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 252 (623)
...|++++|++.|++..+.. |+..........+...++.++|...|.+.... ..|+...+ .+. ....|+...
T Consensus 143 ~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~---~~~~~~~~-~~~--~~~lg~~~~ 214 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK---LDKEQWGW-NIV--EFYLGKISE 214 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh---CCccccHH-HHH--HHHccCCCH
Confidence 77777777777777766552 32221111112233455677777777554321 12332221 222 223444433
Q ss_pred HHHHHHHHHh---cCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006981 253 AREVYKMIHK---YNI---KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (623)
Q Consensus 253 A~~~~~~~~~---~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 299 (623)
+ ..+..+.+ ... +....+|..+...+.+.|++++|...|++....+
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3 23333321 111 1223567777777777777777777777777654
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.98 E-value=1.2e-06 Score=85.29 Aligned_cols=219 Identities=11% Similarity=-0.024 Sum_probs=134.7
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006981 211 GAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (623)
Q Consensus 211 g~~~~A~~~~~~m~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 288 (623)
+..+.++.-+.++.... ...|+ ...|..+...|.+.|+.++|...|++..+.+ +.+...|+.+...+...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~-~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASR-DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccc-cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 34555666666665431 22222 2345566667777788888888888777765 55677788888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (623)
Q Consensus 289 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (623)
...|++..+.... +...+..+..++...|++++|.+.++...+.. |+..........+...++.++|...|.+....
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 8888887765433 45566667777777788888888888777654 32221222222334566788888888665432
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHC---C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006981 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL---G--LCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (623)
Q Consensus 369 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g--~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g 439 (623)
. .|+...| . ......|+..++ +.+..+.+. . +.| ...+|..+...+.+.|++++|...|++..+.+
T Consensus 195 ~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 L-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred C-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1 2222222 1 222335555544 344444421 0 111 23467778888888999999999998888754
No 78
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.94 E-value=8.3e-06 Score=82.37 Aligned_cols=88 Identities=15% Similarity=0.098 Sum_probs=38.2
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCCH--HHHHHHHHHHHh
Q 006981 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGTP--EVYTIAINCCSQ 281 (623)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~~~~~li~~~~~ 281 (623)
..+...|++++|.+.+++..... +.+...+..+...+...|++++|...+++...... .++. ..|..+...+..
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~---p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELN---PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 34444455555555555544321 22233344444444555555555555544443321 0111 123344444555
Q ss_pred cCCHHHHHHHHHHH
Q 006981 282 TGDWEFACSVYDDM 295 (623)
Q Consensus 282 ~g~~~~A~~l~~~m 295 (623)
.|++++|..++++.
T Consensus 199 ~G~~~~A~~~~~~~ 212 (355)
T cd05804 199 RGDYEAALAIYDTH 212 (355)
T ss_pred CCCHHHHHHHHHHH
Confidence 55555555555544
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.93 E-value=2.2e-06 Score=75.55 Aligned_cols=200 Identities=16% Similarity=0.068 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006981 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (623)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (623)
+...|.-.|...|+...|.+-+++.++.. +.+..+|..+...|.+.|+.+.|.+-|++..+.. +-+-.+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 34455666777777777777777777764 3345677777777777777777777777777653 334556677777777
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006981 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (623)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 288 (623)
..|.+++|.+.|++.... .....-..+|..+.-+..+.|+.+.|...|++..+.+ +..+.+.-.+.....+.|++-.|
T Consensus 115 ~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 777777777777776653 1222223466666666677777777777777777765 44455666777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (623)
Q Consensus 289 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (623)
...++.....+. ++..++-..|..--..|+.+.+-++=.++.+.
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 777777776655 67777777777777777777776665555543
No 80
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.92 E-value=1.4e-05 Score=80.65 Aligned_cols=305 Identities=15% Similarity=0.025 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH--
Q 006981 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNV-HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA-- 202 (623)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-- 202 (623)
...|..+...+...|+.+.+.+.+....+... .++. .........+...|++++|.+.+++..+.. +.|...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 44556666666667777776666666554321 1222 112222334567788999999988887663 334444442
Q ss_pred -HHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006981 203 -LITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280 (623)
Q Consensus 203 -li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 280 (623)
........+..+.+.+.+... .+..|+ ......+...+...|++++|...+++..+.. +.+...+..+...|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~ 159 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLW----APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE 159 (355)
T ss_pred HHHHhcccccCchhHHHHHhcc----CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 111112245555555555442 123344 3444566678899999999999999999886 666788899999999
Q ss_pred hcCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcC
Q 006981 281 QTGDWEFACSVYDDMTKKGV-IPDE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGI-SVGIISY-S--SLMGACSNAK 353 (623)
Q Consensus 281 ~~g~~~~A~~l~~~m~~~~~-~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~g 353 (623)
..|++++|...+++...... .|+. ..|..+...+...|+.++|..+++....... .+..... + .++.-+...|
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 239 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG 239 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC
Confidence 99999999999998877532 2232 3455677888999999999999999864432 1222211 1 3333344445
Q ss_pred CHHHHHHH--H-HHHHhCCC-CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCC-------C-CHHHHHHHHHHHHh
Q 006981 354 NWQKALEL--Y-EHMKSIKL-KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-------P-NTITYSILLVACER 421 (623)
Q Consensus 354 ~~~~A~~~--~-~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-------p-~~~t~~~ll~a~~~ 421 (623)
....+.+. . ..-..... ............++...|+.++|..++..+...... . ..........++..
T Consensus 240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 33333332 1 21111100 111122235667788899999999999988753211 0 11112222245678
Q ss_pred cCCHHHHHHHHHHHHH
Q 006981 422 KDDVEVGLMLLSQAKE 437 (623)
Q Consensus 422 ~g~~~~a~~~~~~~~~ 437 (623)
.|+.++|.+.+.....
T Consensus 320 ~g~~~~A~~~L~~al~ 335 (355)
T cd05804 320 EGNYATALELLGPVRD 335 (355)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999988765
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.85 E-value=4.2e-06 Score=73.75 Aligned_cols=193 Identities=11% Similarity=0.057 Sum_probs=98.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006981 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (623)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 319 (623)
|.-.|...|+...|..-+++..+.+ +.+..+|..+...|.+.|..+.|.+-|++....... +....|.....+|..|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCC
Confidence 4444555555555555555555554 444455555555555555555555555555544322 33334444444555555
Q ss_pred HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHH
Q 006981 320 VEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (623)
Q Consensus 320 ~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 398 (623)
+++|...|++..... ..--..+|..+.-+..+.|+.+.|...|++..+... -...+.-.+.....+.|++-.|..+++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHHHHHH
Confidence 555555555554431 111233455555555555556666655555554431 122344455555555666666665555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (623)
Q Consensus 399 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (623)
.....+. ++..+.-..|..-...|+.+.+-++=.++.
T Consensus 198 ~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 198 RYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5554433 555555555555555565555555444443
No 82
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.84 E-value=0.0002 Score=72.39 Aligned_cols=465 Identities=12% Similarity=0.164 Sum_probs=287.7
Q ss_pred CCCCCCCCCCCCccCChhhhHHHHHHHH--hcCCH-HHHHHHHHHHHHcCCCCCchHHHHHHH-HH------Hh------
Q 006981 9 LQFPYPNGKHANYAHDVSEQLHSYNRLI--RQGRI-SECIDLLEDMERKGLLDMDKVYHARFF-NV------CK------ 72 (623)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~g~~-~~A~~l~~~m~~~~~~~~~~~~~~~l~-~~------~~------ 72 (623)
+..||......+ +-++.+|-.+| +.|.. ..-..+|++..+.-+ ......+.++- +. |-
T Consensus 12 EDvpfEeEilRn-----p~svk~W~RYIe~k~~sp~k~~~~lYERal~~lp-~sykiW~~YL~~R~~~vk~~~~T~~~~~ 85 (835)
T KOG2047|consen 12 EDVPFEEEILRN-----PFSVKCWLRYIEHKAGSPDKQRNLLYERALKELP-GSYKIWYDYLKARRAQVKHLCPTDPAYE 85 (835)
T ss_pred cccchHHHHHcC-----chhHHHHHHHHHHHccCChHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHHhhccCCCChHHH
Confidence 445555443333 55778898888 55544 445567788877542 22333333331 11 11
Q ss_pred -hhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 006981 73 -SQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLITTCAKSGKVDAMFEVF 150 (623)
Q Consensus 73 -~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~ 150 (623)
-++.++.++.++.+|| ..|-..+..+.++|++......|+..+..- +.-....|...+......+-++-+..+|
T Consensus 86 ~vn~c~er~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvy 161 (835)
T KOG2047|consen 86 SVNNCFERCLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVY 161 (835)
T ss_pred HHHHHHHHHHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHH
Confidence 1233455555555554 468888888899999999999998887642 2223457888888888899999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHccCCHH---HHHHHHH
Q 006981 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK------NVKPDRVVFNALITACGQSGAVD---RAFDVLA 221 (623)
Q Consensus 151 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~---~A~~~~~ 221 (623)
++.++. ++..-+--|..+++.+++++|-+.+...... ..+.+-..|..+-...++.-+.- ....++.
T Consensus 162 rRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR 237 (835)
T KOG2047|consen 162 RRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIR 237 (835)
T ss_pred HHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHH
Confidence 999854 4555778888899999999999999887543 12445566776666666554322 2333444
Q ss_pred HHhhCCCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----------------cC
Q 006981 222 EMNAEVHPVDPD--HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ----------------TG 283 (623)
Q Consensus 222 ~m~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----------------~g 283 (623)
.+. +.-+| ...|++|.+-|.+.|.+++|..+|++....-. +..-|+.+.++|++ .+
T Consensus 238 ~gi----~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~ 311 (835)
T KOG2047|consen 238 GGI----RRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESG 311 (835)
T ss_pred hhc----ccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 443 23455 35789999999999999999999998876532 11223333333322 11
Q ss_pred C------HHHHHHHHHHHHhCCC----------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CHH
Q 006981 284 D------WEFACSVYDDMTKKGV----------IP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV------GII 340 (623)
Q Consensus 284 ~------~~~A~~l~~~m~~~~~----------~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~ 340 (623)
+ ++-...-|+.+...+. .| ++.+|..-+. ...|+..+-...+.+..+. +.| -..
T Consensus 312 n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~ 388 (835)
T KOG2047|consen 312 NEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGT 388 (835)
T ss_pred ChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhh
Confidence 1 2223333444433211 01 2333333332 2346677777788877664 122 235
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCChhhHHHHHHHHHHCC----------CCC
Q 006981 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPT---VSTMNALITALCDGDQLPKTMEVLSDMKSLG----------LCP 407 (623)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----------~~p 407 (623)
.|..+...|...|+++.|+.+|++..+...+-- ..+|..-...=.++.+++.|+++.+...... -.|
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 688889999999999999999999987543221 2456666666678889999999998875421 111
Q ss_pred -------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcHHHHHHhhHhhhhccCCC----
Q 006981 408 -------NTITYSILLVACERKDDVEVGLMLLSQAKEDGVI-PNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR---- 475 (623)
Q Consensus 408 -------~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~-p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~---- 475 (623)
+...|+.+++.--..|-++....+++++++..+. |....--++. +++-.-++++...|..+-
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmf------LEeh~yfeesFk~YErgI~LFk 542 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMF------LEEHKYFEESFKAYERGISLFK 542 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHH------HHhhHHHHHHHHHHHcCCccCC
Confidence 1234666666666678888889999999876443 4333322221 344444444444444442
Q ss_pred -ccchhhhhH---------------HHHHHHHHHHHcCCCCcHH
Q 006981 476 -PQIENKWTS---------------LALMVYREAIVAGTIPTVE 503 (623)
Q Consensus 476 -~~~~~~~~~---------------~a~~~~~~m~~~g~~p~~~ 503 (623)
|..-.-|+. .|-.+|++.++ |+.|...
T Consensus 543 ~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~a 585 (835)
T KOG2047|consen 543 WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHA 585 (835)
T ss_pred CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHH
Confidence 222234543 48889999888 7777763
No 83
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=0.00013 Score=69.88 Aligned_cols=417 Identities=12% Similarity=0.080 Sum_probs=244.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC------------------CCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCC
Q 006981 30 HSYNRLIRQGRISECIDLLEDMERKGL------------------LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT 91 (623)
Q Consensus 30 ~~~~~l~~~g~~~~A~~l~~~m~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 91 (623)
..++.+-+...+..|.+-|....+... .+.+.......+..+...++-++|+....++|+.-
T Consensus 48 yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~ 127 (564)
T KOG1174|consen 48 YLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL 127 (564)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc
Confidence 345555577778888888877654321 11122222333444455566677777777776432
Q ss_pred H-HHHHHHHHHHHcCC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 92 L-STFNMLMSVCASSK-DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (623)
Q Consensus 92 ~-~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (623)
. .--|.++.-+-+.| +-.++.--+......- +. . ...|.+..+.+ +..+...=..|-...++|+..+...-+
T Consensus 128 r~p~inlMla~l~~~g~r~~~~vl~ykevvrec-p~---a-L~~i~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wi 201 (564)
T KOG1174|consen 128 RSPRINLMLARLQHHGSRHKEAVLAYKEVIREC-PM---A-LQVIEALLELG-VNGNEINSLVMHAATVPDHFDWLSKWI 201 (564)
T ss_pred cchhHHHHHHHHHhccccccHHHHhhhHHHHhc-ch---H-HHHHHHHHHHh-hcchhhhhhhhhheecCCCccHHHHHH
Confidence 2 23344444333333 2112222222222110 10 0 11111222111 011111111122222344444444444
Q ss_pred HHHHh--cCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHH-HHHHHHHHH
Q 006981 170 DGCAK--AGQVAKAFGAYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT-IGALMKACA 245 (623)
Q Consensus 170 ~~~~~--~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~~~ll~~~~ 245 (623)
.+++. .++...|...+-.+... -++-|+.....+...+...|+.++|...|+.... +.|+..+ .....-.+.
T Consensus 202 ka~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~----~dpy~i~~MD~Ya~LL~ 277 (564)
T KOG1174|consen 202 KALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC----ANPDNVEAMDLYAVLLG 277 (564)
T ss_pred HHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh----CChhhhhhHHHHHHHHH
Confidence 44443 45555555555444332 3456777888999999999999999999998764 3454332 111222346
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006981 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325 (623)
Q Consensus 246 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 325 (623)
+.|+.++...+...+.... ......|-.-........+++.|+.+-++.++.+.. +...+-.-...+...|+.++|.-
T Consensus 278 ~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~I 355 (564)
T KOG1174|consen 278 QEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVI 355 (564)
T ss_pred hccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHH
Confidence 7788888877777765543 222344544455556678899999998888876433 44445444556778899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHH-HcCCChhhHHHHHHHHHHC
Q 006981 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI-TAL-CDGDQLPKTMEVLSDMKSL 403 (623)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li-~~~-~~~g~~~~A~~l~~~m~~~ 403 (623)
.|+...... +.+...|..|+..|...|++.+|.-+-+..... ++.+..+.+.+. ..+ .....-++|.+++++-.+
T Consensus 356 aFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~- 432 (564)
T KOG1174|consen 356 AFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK- 432 (564)
T ss_pred HHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc-
Confidence 999887653 457889999999999999999988776554332 123445554431 222 223345789999988776
Q ss_pred CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cHHHHHHh
Q 006981 404 GLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL 464 (623)
Q Consensus 404 g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~ 464 (623)
+.|+. .....+...|...|..+.++.+++.... ..||...-+.|-+.+.- .+.+|.+.
T Consensus 433 -~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~ 493 (564)
T KOG1174|consen 433 -INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEY 493 (564)
T ss_pred -cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHH
Confidence 46764 3466677889999999999999998877 57888888887776542 34444433
No 84
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.82 E-value=7.8e-05 Score=76.97 Aligned_cols=201 Identities=11% Similarity=0.040 Sum_probs=113.1
Q ss_pred CCchHHHHHHHHHHhhhHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 006981 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA-DCKLYTTL 133 (623)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~-~~~~~~~l 133 (623)
.|+..+.-.+.-.....|++..+.+.|++..+ .....|+.+-..++..|.-..|..+++.-....-.| |...+-..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 35555555555555667888888888887543 345567777777888888888888887665433223 33333333
Q ss_pred HHHHH-HcCChhHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCC-CCC
Q 006981 134 ITTCA-KSGKVDAMFEVFHEMVNA--GI--EPNVHTYGALIDGCAKA-----------GQVAKAFGAYGIMRSKNV-KPD 196 (623)
Q Consensus 134 i~~~~-~~g~~~~A~~~~~~m~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~-~p~ 196 (623)
-..|. +.+.+++++..-.+.... +. ......|..+.-+|... ....++++.+++..+.+. .|+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 33333 235566666555555441 10 11233344444444321 224566777777765532 222
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 006981 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (623)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (623)
+..| +---|+..++++.|++...+..+-+ -..+...|..|.-.+...+++.+|+.+.+....
T Consensus 480 ~if~--lalq~A~~R~l~sAl~~~~eaL~l~--~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 480 VIFY--LALQYAEQRQLTSALDYAREALALN--RGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred HHHH--HHHHHHHHHhHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 2222 3334556667777777777766532 234556666666667777777777777665543
No 85
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.82 E-value=7.5e-05 Score=85.62 Aligned_cols=337 Identities=9% Similarity=-0.039 Sum_probs=206.0
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC------CCC--HHHHHHHHHHHH
Q 006981 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI------EPN--VHTYGALIDGCA 173 (623)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~~~--~~~~~~li~~~~ 173 (623)
....|++..+...++.+.......+..........+...|+++++..++......-- .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 445677776666665542211112222333445556678899999988887754210 111 112223334556
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC---CHHHHHHHHHHHHH
Q 006981 174 KAGQVAKAFGAYGIMRSKNVKPDR----VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP---DHITIGALMKACAN 246 (623)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~~~ll~~~~~ 246 (623)
..|++++|...+++....-...+. ...+.+...+...|++++|...+.+.........+ ...++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999887653111121 23455566677889999999998887642111111 12344556677888
Q ss_pred cCChHHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC--CHHHHHHHHHHHH
Q 006981 247 AGQVDRAREVYKMIHKY----NIK--G-TPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIP--DEVFLSALIDFAG 315 (623)
Q Consensus 247 ~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~~p--~~~~~~~li~~~~ 315 (623)
.|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999988776542 211 1 1233455566677789999999998877542 1112 1233444556777
Q ss_pred hcCCHHHHHHHHHHHHHCC--CCCCHH--H-H-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHc
Q 006981 316 HAGKVEAAFEILQEAKNQG--ISVGII--S-Y-SSLMGACSNAKNWQKALELYEHMKSIKLKPTV---STMNALITALCD 386 (623)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~--~~~~~~--~-~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~ 386 (623)
..|+.+.|...+....... ...... . . ...+..+...|+.+.|...+............ ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8899999999888875421 111111 0 0 11224455688999999988776542211111 113456677888
Q ss_pred CCChhhHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 387 GDQLPKTMEVLSDMKSL----GLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (623)
Q Consensus 387 ~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (623)
.|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999887642 32222 234556667888999999999999998764
No 86
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.78 E-value=0.00011 Score=68.47 Aligned_cols=327 Identities=16% Similarity=0.162 Sum_probs=194.5
Q ss_pred CCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHH---HHHHcCCChHHHHHHHHHHHHcCCCCCHHH-HHHH
Q 006981 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM---SVCASSKDSEGAFQVLRLVQEAGLKADCKL-YTTL 133 (623)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~-~~~l 133 (623)
+.+..-|.-++..+...|++.+|+..|.....-|+..|.++. ..|...|+...|+.=+.+.++. +||-.. -..-
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 345556666777777778888888888887766666666655 3577788888888888877764 666432 1222
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH
Q 006981 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213 (623)
Q Consensus 134 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 213 (623)
...+.+.|.+++|..-|+..++. .|+..+ ...++.+.-..++-+. ....+..+...|+.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~--~~s~~~---~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQH--EPSNGL---VLEAQSKLALIQEHWV----------------LVQQLKSASGSGDC 171 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhc--CCCcch---hHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCch
Confidence 34566888888888888888876 333211 1122222211111111 12233345567788
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006981 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (623)
Q Consensus 214 ~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 293 (623)
..|+.....+.+. .+.|...+..-..+|...|++..|+.=++...+.. ..+...+-.+-..+...|+.+.++...+
T Consensus 172 ~~ai~~i~~llEi---~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 172 QNAIEMITHLLEI---QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred hhHHHHHHHHHhc---CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 8888888877753 24566677777788888888888888777776664 4455666677777788888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006981 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373 (623)
Q Consensus 294 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 373 (623)
+.++.+ ||....-. .| ..+.+..+.+..|.+ ....+++.++.+-.+...+......
T Consensus 248 ECLKld--pdHK~Cf~---~Y---KklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~ep~~~ 303 (504)
T KOG0624|consen 248 ECLKLD--PDHKLCFP---FY---KKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKNEPEET 303 (504)
T ss_pred HHHccC--cchhhHHH---HH---HHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCCccc
Confidence 877653 44432111 11 112222222222222 1233445555555555444322211
Q ss_pred HH---HHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 374 VS---TMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 374 ~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
.. .+..+-.++...|++.+|++.-.+.+. +.|| ..++.--..+|.-...++.|+.-|+...+
T Consensus 304 ~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 304 MIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred ceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 22 223344455566677777777766665 3454 55666666666666677777777766665
No 87
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=0.00019 Score=71.93 Aligned_cols=381 Identities=12% Similarity=0.111 Sum_probs=209.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHH
Q 006981 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGA 111 (623)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 111 (623)
.-+||+.+++++|+.+.+.=.... ..+...+.-.+ ..-+.+..++|+..++...+.+..+...-...+.+.+++++|
T Consensus 53 vValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAY-c~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydea 129 (652)
T KOG2376|consen 53 VVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAY-CEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEA 129 (652)
T ss_pred HhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHH-HHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHH
Confidence 345779999999996665433211 11111111111 112457899999999966666666777777889999999999
Q ss_pred HHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHhcCCHHHHHHHHH
Q 006981 112 FQVLRLVQEAGLKADCK--LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI---DGCAKAGQVAKAFGAYG 186 (623)
Q Consensus 112 ~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li---~~~~~~g~~~~A~~~~~ 186 (623)
+.+|+.+.+.+.+ |.. .-..++.+-.. -.+ ++.+... ..| ..+|..+- -.+...|++.+|+++++
T Consensus 130 ldiY~~L~kn~~d-d~d~~~r~nl~a~~a~----l~~-~~~q~v~---~v~-e~syel~yN~Ac~~i~~gky~qA~elL~ 199 (652)
T KOG2376|consen 130 LDIYQHLAKNNSD-DQDEERRANLLAVAAA----LQV-QLLQSVP---EVP-EDSYELLYNTACILIENGKYNQAIELLE 199 (652)
T ss_pred HHHHHHHHhcCCc-hHHHHHHHHHHHHHHh----hhH-HHHHhcc---CCC-cchHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 9999999877632 211 11111111110 011 1122221 122 22333222 23456777777777777
Q ss_pred HHHhC-------C------CCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHH----HHHHHHHHHHc-
Q 006981 187 IMRSK-------N------VKPDRVV-FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT----IGALMKACANA- 247 (623)
Q Consensus 187 ~m~~~-------g------~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~----~~~ll~~~~~~- 247 (623)
..... + +.-+..+ --.|.-.+-..|+..+|.+++....+.. .+|... -|.|+..-...
T Consensus 200 kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~---~~D~~~~Av~~NNLva~~~d~~ 276 (652)
T KOG2376|consen 200 KALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN---PADEPSLAVAVNNLVALSKDQN 276 (652)
T ss_pred HHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc---CCCchHHHHHhcchhhhccccc
Confidence 66211 1 0000011 1123334455677777877777776542 222211 11111110000
Q ss_pred --------------------------------------------CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--
Q 006981 248 --------------------------------------------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ-- 281 (623)
Q Consensus 248 --------------------------------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 281 (623)
+..+.+.++-.... +..| ...+..++....+
T Consensus 277 ~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp--~~~p-~~~~~~ll~~~t~~~ 353 (652)
T KOG2376|consen 277 YFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP--GMSP-ESLFPILLQEATKVR 353 (652)
T ss_pred cCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC--ccCc-hHHHHHHHHHHHHHH
Confidence 00111111111100 1112 2334444444332
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcC
Q 006981 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ--------EAKNQGISVGIISYSSLMGACSNAK 353 (623)
Q Consensus 282 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~li~~~~~~g 353 (623)
...+..+.+++...-+....-.....-..+......|+++.|.+++. .+.+.+..| .+..+++..|.+.+
T Consensus 354 ~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~ 431 (652)
T KOG2376|consen 354 EKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIK 431 (652)
T ss_pred HHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhcc
Confidence 22466777777776665333234555666777888999999999999 555555444 45567788888888
Q ss_pred CHHHHHHHHHHHHhC--CCCCCH----HHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006981 354 NWQKALELYEHMKSI--KLKPTV----STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427 (623)
Q Consensus 354 ~~~~A~~~~~~m~~~--~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 427 (623)
+-+.|..++...... .-.+.. .+|.-+...-.+.|+-++|..+++++.+.. ++|..+...++.+|++. +++.
T Consensus 432 ~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~ek 509 (652)
T KOG2376|consen 432 DNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEK 509 (652)
T ss_pred CCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHH
Confidence 877777777765431 001122 233344444557899999999999999853 67888999999998876 4566
Q ss_pred HHHHHHHH
Q 006981 428 GLMLLSQA 435 (623)
Q Consensus 428 a~~~~~~~ 435 (623)
|..+-+.+
T Consensus 510 a~~l~k~L 517 (652)
T KOG2376|consen 510 AESLSKKL 517 (652)
T ss_pred HHHHhhcC
Confidence 66655443
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.75 E-value=3.4e-07 Score=87.75 Aligned_cols=82 Identities=26% Similarity=0.272 Sum_probs=36.6
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 006981 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV-EAAFEIL 327 (623)
Q Consensus 249 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~ 327 (623)
.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+.. +..++..++......|+. +.+.+.+
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 345555555554433 2344455555555555555555555555554433322 333444444444444444 3444455
Q ss_pred HHHHH
Q 006981 328 QEAKN 332 (623)
Q Consensus 328 ~~~~~ 332 (623)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 54444
No 89
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.67 E-value=0.00035 Score=65.32 Aligned_cols=319 Identities=12% Similarity=0.081 Sum_probs=190.2
Q ss_pred CCccCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHH-H
Q 006981 19 ANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLST-F 95 (623)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~-~ 95 (623)
...|-++...+..-+.|+-.|++.+|+.-|....+-+ |.+-.....-...+...|....|+.=|.++. .||-.. -
T Consensus 32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~AR 109 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAAR 109 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHH
Confidence 3455667777788889999999999999999999877 5554444444445556666666776666654 344321 1
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH--HH------------HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 006981 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADC--KL------------YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN 161 (623)
Q Consensus 96 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~--~~------------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 161 (623)
..-...+.+.|.+++|..=|+..+++....+. .. ....+..+.-.|+...|+.....+++.. +.|
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wd 188 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWD 188 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cch
Confidence 12234688999999999999999987422111 11 1222333445677777888877777654 457
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHH
Q 006981 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241 (623)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll 241 (623)
...|..-..+|...|++..|+.-++...+.. .-++.++--+-..+...|+.+.++....+..+ +.||...+-..-
T Consensus 189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK----ldpdHK~Cf~~Y 263 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK----LDPDHKLCFPFY 263 (504)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc----cCcchhhHHHHH
Confidence 7777777788888888888877666655442 23455555666667777888877777777664 456654332111
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcC
Q 006981 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF---LSALIDFAGHAG 318 (623)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~---~~~li~~~~~~g 318 (623)
..+.+..+.++.|. .....++|.++++-.+...+.......+. +..+-.++...|
T Consensus 264 ------KklkKv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~ 321 (504)
T KOG0624|consen 264 ------KKLKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDE 321 (504)
T ss_pred ------HHHHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccC
Confidence 11111111111111 12234555555555555555433211222 223333444556
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (623)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (623)
++.+|++.-.++.... +.|+.++---..+|.-...++.|+.-|+...+.
T Consensus 322 ~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 322 QFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred CHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 6666666666665542 223556666666666666667776666666653
No 90
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.67 E-value=0.00018 Score=82.60 Aligned_cols=331 Identities=10% Similarity=0.015 Sum_probs=209.5
Q ss_pred hhHHHHHHHHHhhhCCC----CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCC------CCC--HHHHHHHHHHHHHc
Q 006981 73 SQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL------KAD--CKLYTTLITTCAKS 140 (623)
Q Consensus 73 ~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~------~~~--~~~~~~li~~~~~~ 140 (623)
..|+.+.+...++.++. .+..........+...|++++|...+....+.-- .+. ......+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 34566777777766641 2222333444556678999999999987754311 111 11222334456688
Q ss_pred CChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHccC
Q 006981 141 GKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSK----NV-KPDRVVFNALITACGQSG 211 (623)
Q Consensus 141 g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g 211 (623)
|++++|...+++..+.-...+. ...+.+...+...|++++|...+++.... |- .+...++..+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 9999999999988763111221 34556666778899999999999887642 21 111234455667788899
Q ss_pred CHHHHHHHHHHHhhCC--CCCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCC--CHHHHHHHHHHHHhc
Q 006981 212 AVDRAFDVLAEMNAEV--HPVD--P-DHITIGALMKACANAGQVDRAREVYKMIHKYN--IKG--TPEVYTIAINCCSQT 282 (623)
Q Consensus 212 ~~~~A~~~~~~m~~~~--~~~~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~li~~~~~~ 282 (623)
++++|...+.+..... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+...
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 625 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR 625 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence 9999999887765421 1111 1 22334455667778899999999998775431 111 233455566778889
Q ss_pred CCHHHHHHHHHHHHhCC--CCCCHH--HH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcC
Q 006981 283 GDWEFACSVYDDMTKKG--VIPDEV--FL--SALIDFAGHAGKVEAAFEILQEAKNQGISVG---IISYSSLMGACSNAK 353 (623)
Q Consensus 283 g~~~~A~~l~~~m~~~~--~~p~~~--~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g 353 (623)
|++++|.+.+.+..... ...... .. ...+..+...|+.+.|...+........... ......+..++...|
T Consensus 626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence 99999999998875421 111111 10 1122444567899999998776544221111 112345677788999
Q ss_pred CHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHcCCChhhHHHHHHHHHHC
Q 006981 354 NWQKALELYEHMKSI----KLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (623)
Q Consensus 354 ~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 403 (623)
+.++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 706 ~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 706 QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999887642 22222 245666777888999999999999998875
No 91
>PF12854 PPR_1: PPR repeat
Probab=98.65 E-value=3.3e-08 Score=60.21 Aligned_cols=32 Identities=28% Similarity=0.597 Sum_probs=16.7
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHH
Q 006981 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (623)
Q Consensus 369 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 400 (623)
|+.||..|||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34455555555555555555555555555544
No 92
>PF12854 PPR_1: PPR repeat
Probab=98.64 E-value=4.6e-08 Score=59.59 Aligned_cols=32 Identities=53% Similarity=0.865 Sum_probs=14.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (623)
Q Consensus 157 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (623)
|+.||..|||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=0.00031 Score=69.79 Aligned_cols=404 Identities=14% Similarity=0.051 Sum_probs=216.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCh
Q 006981 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (623)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~ 108 (623)
-|..+..|+++.|+.+|-+.+..+ |.+.+.++.-...+.+.|++.+|++=-.+.. +.=...|+-...++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 356678889999999998888766 5677776666777777788888776554432 23345788888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-----HHHHhcCCHHHHHH
Q 006981 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI-----DGCAKAGQVAKAFG 183 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li-----~~~~~~g~~~~A~~ 183 (623)
++|+..|..-++.. +.+...++-+.+++.... .+.+.|. +...|..+. +.+...-.+..-++
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~---------~p~~~~~l~~~p~t~~~~~~~~~~~~l~ 153 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFT---------KPYFHEKLANLPLTNYSLSDPAYVKILE 153 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHH---Hhhhhcc---------CcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence 88888888877764 455667777777761110 0111110 111111111 11111111111111
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHccCCHHHH-HHHHHHH---------hhCCCCCCC--C----------HHHHHHH
Q 006981 184 AYGIMRSK-NVKPDRVVFNALITACGQSGAVDRA-FDVLAEM---------NAEVHPVDP--D----------HITIGAL 240 (623)
Q Consensus 184 ~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A-~~~~~~m---------~~~~~~~~~--~----------~~~~~~l 240 (623)
.+..-... +...+ ...++.+.......+.- ...-..+ .....+.++ | ..-...+
T Consensus 154 ~~~~~p~~l~~~l~---d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~l 230 (539)
T KOG0548|consen 154 IIQKNPTSLKLYLN---DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKEL 230 (539)
T ss_pred HhhcCcHhhhcccc---cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHH
Confidence 11100000 00000 00111111100000000 0000000 000000000 1 1123456
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-------HHHHH
Q 006981 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS-------ALIDF 313 (623)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~-------~li~~ 313 (623)
.++.-+..+++.|.+-+....... .+..-++....+|...|.+.++...-.+..+.|.. ...-|+ .+..+
T Consensus 231 gnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 231 GNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhh
Confidence 666677778888888888877765 44555677777888888887777776666555432 112222 23335
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCChhh
Q 006981 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS-TMNALITALCDGDQLPK 392 (623)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~ 392 (623)
|.+.++++.|...|.+.......|+. ..+....+++....+...-.+ |... ---.-...+.+.|++..
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHH
Confidence 66677888888888886655434332 223344455555554443322 2221 11122456778889999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-H--HHHHHHHHhcHHHHHHhhHhhh
Q 006981 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM-F--KCIIGMCSRRYEKARTLNEHVL 469 (623)
Q Consensus 393 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~-~--~~li~~~~~~~~~a~~~~~~~~ 469 (623)
|+..+.++++.. +-|...|+.-.-+|.+.|.+..|+.-.+..++. .|+... | ...+--..++|++|.+-...-+
T Consensus 377 Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 377 AVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888764 336777888888888889888888887777663 455432 1 1111111235666665544433
Q ss_pred h
Q 006981 470 S 470 (623)
Q Consensus 470 ~ 470 (623)
.
T Consensus 454 e 454 (539)
T KOG0548|consen 454 E 454 (539)
T ss_pred h
Confidence 3
No 94
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.61 E-value=0.00024 Score=72.67 Aligned_cols=195 Identities=15% Similarity=0.174 Sum_probs=116.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 006981 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (623)
Q Consensus 133 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 212 (623)
.+.+......+.+|+.+++.+..+. .-..-|..+.+.|+..|+++.|.++|.+. ..++-.|..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcccc
Confidence 3445556666777777777666542 22234566667777777777777777543 234556677777777
Q ss_pred HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292 (623)
Q Consensus 213 ~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 292 (623)
++.|.++-.+.. +.......|-+-..-.-+.|++.+|.++|-.+.. |+ ..|.+|-+.|..++.+++.
T Consensus 807 w~da~kla~e~~----~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 807 WEDAFKLAEECH----GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred HHHHHHHHHHhc----CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHH
Confidence 777777766543 2233444555555555666777777776654432 21 2456677777777766665
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006981 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (623)
Q Consensus 293 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (623)
.+--... -..|...+..-+...|++..|..-|-+. .-|.+-+++|-..+.+++|.++-+
T Consensus 874 ~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea---------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 874 EKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEA---------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhh---------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 5432111 1234555666666777777777666433 235566677777777777766644
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.60 E-value=4.6e-06 Score=80.05 Aligned_cols=81 Identities=20% Similarity=0.200 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 006981 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV-EVGLMLLS 433 (623)
Q Consensus 355 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~~ 433 (623)
+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..... +-|..|+..++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 44444444444332 23344444444444445555555555444443321 11333444444444444444 33444444
Q ss_pred HHHH
Q 006981 434 QAKE 437 (623)
Q Consensus 434 ~~~~ 437 (623)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 4443
No 96
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.59 E-value=0.00021 Score=75.78 Aligned_cols=76 Identities=13% Similarity=0.034 Sum_probs=56.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChHHHHHH
Q 006981 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQV 114 (623)
Q Consensus 38 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~ 114 (623)
..+...|+..|-+..+.+ +.-......++..++.-.+...|.+.|++.. +.+...+......|++..+++.|..+
T Consensus 471 rK~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHH
Confidence 445777888887777776 4455566678888887778888998888764 45666777788888888888888777
Q ss_pred H
Q 006981 115 L 115 (623)
Q Consensus 115 ~ 115 (623)
.
T Consensus 549 ~ 549 (1238)
T KOG1127|consen 549 C 549 (1238)
T ss_pred H
Confidence 3
No 97
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.56 E-value=0.0011 Score=68.89 Aligned_cols=210 Identities=11% Similarity=0.066 Sum_probs=122.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-H
Q 006981 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV-F 200 (623)
Q Consensus 122 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~ 200 (623)
.+.-|...|..|.-++..+|+++.+.+.|++....- -.....|+.+-..|...|.-..|..+++.-....-.|+..+ +
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 345577777777777888888888888887766432 23456677777778888887778877776654432233332 2
Q ss_pred HHHHHHHHc-cCCHHHHHHHHHHHhhCCCCC--CCCHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHhcCCC
Q 006981 201 NALITACGQ-SGAVDRAFDVLAEMNAEVHPV--DPDHITIGALMKACANA-----------GQVDRAREVYKMIHKYNIK 266 (623)
Q Consensus 201 ~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~--~~~~~~~~~ll~~~~~~-----------g~~~~A~~~~~~~~~~~~~ 266 (623)
-..-..|.+ .+..+++..+-.+......+. ......|..+.-+|... ....++.+.+++..+.+ +
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~ 475 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-P 475 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-C
Confidence 222233332 355555555544443310000 11223344443334321 11345666666666665 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (623)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (623)
.|+.+...+.--|+..++.+.|.+..++..+.+..-+...|..+.-.+...+++.+|+.+.+.....
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 3444434444456677778888888877777654556677777777777777888888777765543
No 98
>PLN02789 farnesyltranstransferase
Probab=98.55 E-value=0.00012 Score=71.20 Aligned_cols=214 Identities=11% Similarity=0.017 Sum_probs=136.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006981 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (623)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (623)
+..+-..+...++.++|+.+...+++.. +-+..+|+..-.++...| ++++++..++++.+.. +.+..+|+.....+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 3333444556677888888888888764 334456666666666666 5688888888887764 345566776655555
Q ss_pred hcCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc---C
Q 006981 174 KAGQV--AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA---G 248 (623)
Q Consensus 174 ~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~---g 248 (623)
+.|+. ++++..++++.+.. +-|..+|+...-++...|+++++++.++++.+.. ..|..+|+.....+.+. |
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d---~~N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED---VRNNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC---CCchhHHHHHHHHHHhccccc
Confidence 66653 56777777777664 4467778777777777788888888888887642 34455565555444443 2
Q ss_pred Ch----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006981 249 QV----DRAREVYKMIHKYNIKGTPEVYTIAINCCSQT----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (623)
Q Consensus 249 ~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 316 (623)
.. +........+.... +.+..+|+-+...+... ++..+|.+.+.+....++. +...+..|++.|+.
T Consensus 194 ~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred cccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 22 35556665666654 55667787777777663 3345577777776654432 55666677777664
No 99
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.54 E-value=6.2e-05 Score=82.32 Aligned_cols=234 Identities=12% Similarity=0.043 Sum_probs=175.3
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 006981 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-----DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268 (623)
Q Consensus 194 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 268 (623)
+-+...|-..|.-..+.++.++|++++++.... +.+ -...|.++++.-...|.-+...++|+++.+.. ..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t---IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~ 1529 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT---INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DA 1529 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh---CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--ch
Confidence 445667888888888899999999999888753 222 13467777777777788888899999888764 22
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 006981 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMG 347 (623)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~ 347 (623)
-.+|..|...|.+.+.+++|.++++.|.+.-- -....|...+..+.+..+-+.|..++.+..+.-.+ -......-.+.
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence 45788899999999999999999999987532 35678888889999888889999999888765211 23455666677
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCH
Q 006981 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDV 425 (623)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~ 425 (623)
.-.+.|+.+.++.+|+...... +.....|+..|+.-.++|+.+.+..+|++....++.|- ...|...|..-...|+-
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 7788999999999999887654 34567899999999999999999999999998887764 33455566554555554
Q ss_pred HHHHHHHHH
Q 006981 426 EVGLMLLSQ 434 (623)
Q Consensus 426 ~~a~~~~~~ 434 (623)
+.+..+=.+
T Consensus 1688 ~~vE~VKar 1696 (1710)
T KOG1070|consen 1688 KNVEYVKAR 1696 (1710)
T ss_pred hhHHHHHHH
Confidence 444433333
No 100
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.54 E-value=5.7e-05 Score=82.62 Aligned_cols=225 Identities=11% Similarity=0.155 Sum_probs=160.0
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA-----DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 165 (623)
+...|-..|.-..+.++.+.|.+++++++.. +.+ -...|.++++.-...|.-+...++|++..+.. -.-..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 4567888888888888888888888888753 222 13367777777777777778888888888742 124467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH
Q 006981 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245 (623)
Q Consensus 166 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~ 245 (623)
..|...|.+.+.+++|.++|+.|.++ +.-....|...+..+.+..+-+.|..++.+..+.- +-.-......-.+..-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHh
Confidence 88888888888888999998888765 23466788888888888888888888888877631 10112333444555667
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHH
Q 006981 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALIDFAGHAGKVE 321 (623)
Q Consensus 246 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~ 321 (623)
+.|+.+.++.+|+...... |--...|+..|+.-.+.|..+.+..+|++....++.|-. +.|...+..=-..|+-+
T Consensus 1612 k~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred hcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 8888888888888887664 445678888888888888888888888888888776532 34444444333334433
No 101
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=0.0011 Score=68.97 Aligned_cols=45 Identities=16% Similarity=0.216 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHh--cHHHHHHhhHhh
Q 006981 424 DVEVGLMLLSQAKEDGVIPN----LVMFKCIIGMCSR--RYEKARTLNEHV 468 (623)
Q Consensus 424 ~~~~a~~~~~~~~~~g~~p~----~~~~~~li~~~~~--~~~~a~~~~~~~ 468 (623)
+..+++.-...|.+..+.|| ...|..||..+.+ .|..|++..+.+
T Consensus 1306 D~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el 1356 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTEL 1356 (1416)
T ss_pred hHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 66777777777776655554 3456777776664 788888776544
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=0.00055 Score=62.81 Aligned_cols=313 Identities=14% Similarity=0.108 Sum_probs=175.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHHHHH-HHHHHHcCC
Q 006981 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNM-LMSVCASSK 106 (623)
Q Consensus 30 ~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~-li~~~~~~~ 106 (623)
.+...||+..++.+|++++..-.++. |.+..-.+.++..+-...++..|...+++.. .|...-|.. -...+.+.+
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 34557899999999999999988887 5566666667776777788999999998864 344443432 234566778
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006981 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTC--AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (623)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (623)
.+..|+.+...|... |+...-..-+.+. ...+++..+..+.++.... .+..+.+...-..-+.|+++.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHH
Confidence 889999998887642 2222222222222 2457777888888777642 2444444444445688999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHh
Q 006981 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT--IGALMKACANAGQVDRAREVYKMIHK 262 (623)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (623)
|....+-+--.....||.-+ +..+.|+.+.|++...++..++..-.|.... -.-.+++ ...|+. . .|..
T Consensus 167 FqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~----~lh~ 237 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---L----VLHQ 237 (459)
T ss_pred HHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---H----HHHH
Confidence 98887654333456676554 4556688888888888877642211121000 0000000 000000 0 0011
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006981 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341 (623)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 341 (623)
.++ +..+|.-...+.+.++++.|.+.+-+|.-+ ....|.+|...+.-. --.+++..+.+-++-+...+. -...|
T Consensus 238 Sal---~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ET 312 (459)
T KOG4340|consen 238 SAL---VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPET 312 (459)
T ss_pred HHH---HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHH
Confidence 111 134444455555666666666666665432 112244443322211 112344444444444444432 23455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 006981 342 YSSLMGACSNAKNWQKALELYEH 364 (623)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~ 364 (623)
|..++-.|||..-++-|-+++.+
T Consensus 313 FANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 313 FANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHhhhHHHhHHHHHHhh
Confidence 66666666666666666666544
No 103
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=0.002 Score=68.73 Aligned_cols=305 Identities=14% Similarity=0.149 Sum_probs=175.0
Q ss_pred HHhhhHHHHHHHHHhhhCC-CCCHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 006981 70 VCKSQKAIKEAFRFFKLVP-NPTLS-----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (623)
Q Consensus 70 ~~~~~~~~~~A~~~~~~~~-~~~~~-----~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 143 (623)
++...+-..+-+++++++. +++++ .-|.||-...+. +.....+..+++..-. .|+ +...+...+-+
T Consensus 993 AfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------ia~iai~~~Ly 1064 (1666)
T KOG0985|consen 993 AFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------IAEIAIENQLY 1064 (1666)
T ss_pred HHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------HHHHHhhhhHH
Confidence 3344444555666666543 33222 223333332222 3344445554444322 122 33444555666
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006981 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (623)
Q Consensus 144 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (623)
++|..+|++.. .+....+.||. .-+..+.|.+.-++.- .+..|+.+..+-.+.|.+.+|.+-|-+.
T Consensus 1065 EEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1065 EEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred HHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc
Confidence 77777776653 45555555554 3455566655544432 3467888888888888888888777443
Q ss_pred hhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006981 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303 (623)
Q Consensus 224 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 303 (623)
.|...|.-+++...+.|.+++-.+.+....+..-.|. +=+.||-+|++.++..+-++.+. -||
T Consensus 1131 --------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~-------gpN 1193 (1666)
T KOG0985|consen 1131 --------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFIA-------GPN 1193 (1666)
T ss_pred --------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHhc-------CCC
Confidence 2445778888888888888888888877777654443 44678888888888776555432 367
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006981 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383 (623)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 383 (623)
......+.+-|...|.++.|.-++.. +.-|..|...+...|++..|.+.-++. .+..||-.+-.+
T Consensus 1194 ~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~Vcfa 1258 (1666)
T KOG0985|consen 1194 VANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFA 1258 (1666)
T ss_pred chhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHH
Confidence 77777777778788888777777653 445666666777777777776655443 245566665555
Q ss_pred HHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006981 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433 (623)
Q Consensus 384 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 433 (623)
|...+.+.-| +|....+..-..-..-++.-|...|-+++.+.+++
T Consensus 1259 Cvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1259 CVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred HhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 5554433322 12111122223334444555555555555444443
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=1.1e-05 Score=80.37 Aligned_cols=221 Identities=13% Similarity=0.066 Sum_probs=145.5
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 006981 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (623)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (623)
+.+.|++.+|.-.|+...++. +-+...|.-|.......++-..|+..+.+..+.+ +.+..+.-+|.-.|...|.-.
T Consensus 295 lm~nG~L~~A~LafEAAVkqd---P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD---PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC---hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 456777888888888777652 3345677777777777777778888888888776 667777778888888888888
Q ss_pred HHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006981 287 FACSVYDDMTKKGVI--------PDEVFLSALIDFAGHAGKVEAAFEILQEAK-NQGISVGIISYSSLMGACSNAKNWQK 357 (623)
Q Consensus 287 ~A~~l~~~m~~~~~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~ 357 (623)
+|++.|+.-+...++ ++..+-.. ........+....++|-++. ..+..+|+.+...|.-.|--.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 888888776543211 00000000 01111112333444444443 33444677777777777888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAK 436 (623)
Q Consensus 358 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (623)
|.+.|+...+.. +-|...||-|...++...+.++|+..|++.++ ++|+- ....-|.-+|...|.+++|...|=.++
T Consensus 449 aiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 888888877654 23567788888888888888888888888876 56763 234445557788888888877775543
No 105
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.49 E-value=0.0019 Score=64.37 Aligned_cols=390 Identities=12% Similarity=0.128 Sum_probs=202.7
Q ss_pred HHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH
Q 006981 51 MERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127 (623)
Q Consensus 51 m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~ 127 (623)
-.+.+ |.+......+++-+..+ .+++++..++++. +.....|..-|..-...++++....+|.+.+..- .+.
T Consensus 12 rie~n--P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--Lnl 86 (656)
T KOG1914|consen 12 RIEEN--PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNL 86 (656)
T ss_pred HHhcC--CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhH
Confidence 34445 66777777777777766 8999999999875 4466789999999999999999999999988763 345
Q ss_pred HHHHHHHHHHHHc-CChhH----HHHHHHHH-HHCCCCCC-HHHHHHHHHH---------HHhcCCHHHHHHHHHHHHhC
Q 006981 128 KLYTTLITTCAKS-GKVDA----MFEVFHEM-VNAGIEPN-VHTYGALIDG---------CAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 128 ~~~~~li~~~~~~-g~~~~----A~~~~~~m-~~~g~~~~-~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~ 191 (623)
..|..-++--.+. ++... ..+.|+-. .+.|+++- ...|+..+.. |..+.+++...++|.++...
T Consensus 87 DLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 87 DLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred hHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 5666555543332 33322 22333332 33454332 3346655543 33445677788888888754
Q ss_pred CCCCCHHHHH------HHHHHH-------HccCCHHHHHHHHHHHhhCCCCCCCCHHH---------------HHHHHHH
Q 006981 192 NVKPDRVVFN------ALITAC-------GQSGAVDRAFDVLAEMNAEVHPVDPDHIT---------------IGALMKA 243 (623)
Q Consensus 192 g~~p~~~~~~------~li~~~-------~~~g~~~~A~~~~~~m~~~~~~~~~~~~~---------------~~~ll~~ 243 (623)
-+.-=...|+ .=|+.. -+...+..|.+++++...-..|+..+..+ |..+|.
T Consensus 167 Pm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~- 245 (656)
T KOG1914|consen 167 PMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK- 245 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH-
Confidence 2211111221 111111 12234556666666654322222211111 323332
Q ss_pred HHHcCChH---------HHHHHHHHH-HhcCCCCCHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHhCC
Q 006981 244 CANAGQVD---------RAREVYKMI-HKYNIKGTPEVYTIAINCCSQTGD--------------WEFACSVYDDMTKKG 299 (623)
Q Consensus 244 ~~~~g~~~---------~A~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~--------------~~~A~~l~~~m~~~~ 299 (623)
+-+.+-+. ...-+++.. .-.+.. +.+|----..+...++ -+++..+++.....-
T Consensus 246 wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~--peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l 323 (656)
T KOG1914|consen 246 WEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYH--PEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGL 323 (656)
T ss_pred HHhcCCcccccccHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 11111111 011111111 111111 1222211111111111 456666666555432
Q ss_pred CCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CH
Q 006981 300 VIPDEVFLSALIDFAGHAG---KVEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TV 374 (623)
Q Consensus 300 ~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~ 374 (623)
..-+..+|..+.+.--..- ..+....++.++...- +.| ..+|-.+++.-.+..-++.|+.+|.+..+.+..+ .+
T Consensus 324 ~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhV 402 (656)
T KOG1914|consen 324 LKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHV 402 (656)
T ss_pred HHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchh
Confidence 2224444444443211111 2445555555554432 233 3456666666666666777777777777665555 56
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 006981 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI-TYSILLVACERKDDVEVGLMLLSQAKEDGVIPN--LVMFKCII 451 (623)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~--~~~~~~li 451 (623)
..+++++.-||. ++..-|.++|+--.+. .+|.. --...++-+.+.++-..++.+|++....++.|| ..+|..+|
T Consensus 403 fVa~A~mEy~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l 479 (656)
T KOG1914|consen 403 FVAAALMEYYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRML 479 (656)
T ss_pred hHHHHHHHHHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHH
Confidence 666666666654 4566677777664432 23332 233555666667777777777777776655544 34566666
Q ss_pred H
Q 006981 452 G 452 (623)
Q Consensus 452 ~ 452 (623)
+
T Consensus 480 ~ 480 (656)
T KOG1914|consen 480 E 480 (656)
T ss_pred H
Confidence 5
No 106
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=1.6e-05 Score=81.35 Aligned_cols=216 Identities=14% Similarity=0.068 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006981 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (623)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (623)
.-..+...+.+.|-...|..+|+++. .|.-.|.+|+..|+..+|..+..+..++ +||...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 34455566666777777777776654 2556666777777777777776666653 566667766666666
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006981 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (623)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 288 (623)
+..-+++|.++++....+ .-..+.....+.++++++.+.|+.-.+.+ +....+|-....+..+.++++.|
T Consensus 469 d~s~yEkawElsn~~sar---------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR---------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ChHHHHHHHHHhhhhhHH---------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHH
Confidence 666666777666654321 11111111223566777777776665554 44556666666666677777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (623)
Q Consensus 289 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (623)
.+.|..-....+. +...|+.+-.+|.+.++..+|...+++..+.+ .-+...|-..+....+.|.+++|.+.+.++.+
T Consensus 539 v~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 539 VKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 7777666554322 34566777777777777777777777666665 33445555555556666777777666666543
No 107
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=4e-05 Score=76.56 Aligned_cols=252 Identities=14% Similarity=0.108 Sum_probs=124.7
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 006981 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216 (623)
Q Consensus 137 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 216 (623)
+.+.|++.+|.-.|+..++.. +-+...|.-|.......++-..|+..+++..+.. +-|....-.|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 345555555555555555543 3345555555555555555555555555555442 22344444555555555555555
Q ss_pred HHHHHHHhhCCCCC----C--CCHHHHHHHHHHHHHcCChHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006981 217 FDVLAEMNAEVHPV----D--PDHITIGALMKACANAGQVDRAREVYKMI-HKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (623)
Q Consensus 217 ~~~~~~m~~~~~~~----~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 289 (623)
++.++.-....... . ++...-.. ........+....++|-.+ ...+...|+.+...|.-.|.-.|.+++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 55555443211000 0 00000000 1111112222333333333 33333355666666666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q 006981 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG-IISYSSLMGACSNAKNWQKALELYEHMKS- 367 (623)
Q Consensus 290 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 367 (623)
+.|+..+..... |...|+.|...++...+.++|+..|.+..+.. |+ +.+...|.-.|...|.+++|.+.|-....
T Consensus 451 Dcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 666666655332 55666666666666666666666666665542 32 23444455556666666666665544322
Q ss_pred --C------CCCCCHHHHHHHHHHHHcCCChhhHHH
Q 006981 368 --I------KLKPTVSTMNALITALCDGDQLPKTME 395 (623)
Q Consensus 368 --~------~~~~~~~~~~~li~~~~~~g~~~~A~~ 395 (623)
. ...++...|.+|=.++.-.++.|-+.+
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 1 112234566666555555565554433
No 108
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.42 E-value=0.0002 Score=73.29 Aligned_cols=166 Identities=16% Similarity=0.186 Sum_probs=96.8
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 006981 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (623)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 283 (623)
+.+......+.+|+.+++.+..+ +.-..-|..+..-|+..|+++.|.++|-+. ..++-.|.+|.+.|
T Consensus 739 ieaai~akew~kai~ildniqdq----k~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQ----KTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhh----ccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccc
Confidence 33445566777777777776543 122234566777888888888888887653 24566778888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006981 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (623)
Q Consensus 284 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (623)
+|++|.++-.+.. |.......|-+-..-.-+.|++.+|.+++-.+. .|+ ..|.+|-+.|..+..+++.+
T Consensus 806 kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 806 KWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred cHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHH
Confidence 8888888765543 333344555555555666777777776654321 122 24556666666666666655
Q ss_pred HHHhCCCCCC--HHHHHHHHHHHHcCCChhhHHHHHH
Q 006981 364 HMKSIKLKPT--VSTMNALITALCDGDQLPKTMEVLS 398 (623)
Q Consensus 364 ~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~ 398 (623)
+-. |+ ..|--.+..-|...|+...|..-|-
T Consensus 875 k~h-----~d~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 875 KHH-----GDHLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred HhC-----hhhhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 432 22 1233333444444555555544443
No 109
>PLN02789 farnesyltranstransferase
Probab=98.41 E-value=0.00037 Score=67.94 Aligned_cols=209 Identities=7% Similarity=0.000 Sum_probs=128.4
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-
Q 006981 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA- 212 (623)
Q Consensus 135 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~- 212 (623)
..+...++.++|+.+.+++++.. +-+..+|+..-.++.+.| ++++++..++++.+.. +-+..+|+.....+.+.|.
T Consensus 45 a~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence 33445667888888888888763 334556776666666667 5788888888888764 3345567655444555554
Q ss_pred -HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCH---
Q 006981 213 -VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT---GDW--- 285 (623)
Q Consensus 213 -~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~--- 285 (623)
.+++..+++.+.... +.+..+|+...-++.+.|+++++++.++++.+.+ +.+..+|+.....+.+. |..
T Consensus 123 ~~~~el~~~~kal~~d---pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 123 AANKELEFTRKILSLD---AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred hhHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhcccccccccc
Confidence 256777777777542 4466777777777778888888888888888876 45566776665555443 222
Q ss_pred -HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006981 286 -EFACSVYDDMTKKGVIPDEVFLSALIDFAGHA----GKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (623)
Q Consensus 286 -~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (623)
++.+....+++...+. |...|+-+...+... +...+|.+.+.+..+.+ +.+......|++.|+.
T Consensus 199 ~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 199 RDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 3455555555554332 455565555555542 23344555555554432 2344455555555553
No 110
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.38 E-value=5.2e-05 Score=71.46 Aligned_cols=187 Identities=11% Similarity=0.004 Sum_probs=126.2
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CC-HH
Q 006981 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC---KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE-PN-VH 163 (623)
Q Consensus 89 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~-~~ 163 (623)
+.....+..+...+...|+++.|...++.+.... +.+. .++..+..++.+.|++++|...++++.+.... +. ..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456677777888888999999999998887753 2222 46677788888999999999999998875311 11 12
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCH
Q 006981 164 TYGALIDGCAKA--------GQVAKAFGAYGIMRSKNVKPDR-VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234 (623)
Q Consensus 164 ~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 234 (623)
++..+...+.+. |+.++|.+.|+++... .|+. ..+..+.... . . .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~------~~~~~---------- 166 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---L------RNRLA---------- 166 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---H------HHHHH----------
Confidence 455555555544 6788888888888765 3332 2222221110 0 0 00000
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 235 ITIGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
.....+...|.+.|++++|...++...+... +.....+..+...+.+.|++++|...++.+...
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0112456678899999999999999887631 234578889999999999999999998888765
No 111
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=0.00056 Score=71.09 Aligned_cols=231 Identities=14% Similarity=0.187 Sum_probs=142.7
Q ss_pred HHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-C--------CCCCHHHHHHHHHHHHHc
Q 006981 70 VCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-G--------LKADCKLYTTLITTCAKS 140 (623)
Q Consensus 70 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g--------~~~~~~~~~~li~~~~~~ 140 (623)
.+...|++|.|.+-.+.+. +-..|..+.+.|.+..+++-|.-.+..|... | -.|+ .+-..+.-.....
T Consensus 737 fyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieL 813 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIEL 813 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHH
Confidence 3456688899888777665 3467999999999999888887777666421 1 1222 2333344445678
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006981 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220 (623)
Q Consensus 141 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 220 (623)
|.+++|..+|.+-.+ |..|=..|...|.+++|+++-+.=-... =..||..-..-+-..++.+.|++.|
T Consensus 814 gMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred hhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHH
Confidence 999999999998875 4455566788899999988765432211 1245555555555667788888777
Q ss_pred HHHh----------hCCCC-------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 006981 221 AEMN----------AEVHP-------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (623)
Q Consensus 221 ~~m~----------~~~~~-------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 283 (623)
++.. .+..+ -..|...|.-...-+...|+.+.|+.+|....+ |-+++...|-.|
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qG 952 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQG 952 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeecc
Confidence 6532 11000 012223333334444556777777777766543 445556666667
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (623)
Q Consensus 284 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (623)
+.++|-++-++- | |......+...|...|++.+|...|.+.
T Consensus 953 k~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 953 KTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred CchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 777766665432 1 4455556666677777777777666654
No 112
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.37 E-value=7.4e-05 Score=70.42 Aligned_cols=186 Identities=13% Similarity=0.064 Sum_probs=129.3
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--H
Q 006981 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN----VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR--V 198 (623)
Q Consensus 125 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~ 198 (623)
.....+..+...+.+.|++++|...|+++.... |+ ..++..+...+.+.|++++|...++++.+....... .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 345677778888999999999999999988753 33 246778888999999999999999999876321111 1
Q ss_pred HHHHHHHHHHcc--------CCHHHHHHHHHHHhhCCCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCH
Q 006981 199 VFNALITACGQS--------GAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269 (623)
Q Consensus 199 ~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 269 (623)
++..+..++.+. |+.++|.+.|+.+... .|+. .....+... .. .. ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~a~~~~-~~---~~------~~~~-------- 166 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR----YPNSEYAPDAKKRM-DY---LR------NRLA-------- 166 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH----CCCChhHHHHHHHH-HH---HH------HHHH--------
Confidence 344455555543 6788899999888764 3432 222222111 00 00 0000
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006981 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGV-IP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (623)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (623)
.....+...|.+.|++++|...+........ .| ....+..+..++.+.|+.++|..+++.+....
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 1123566779999999999999999987632 22 35678899999999999999999999887653
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=3.1e-05 Score=79.35 Aligned_cols=239 Identities=11% Similarity=0.083 Sum_probs=147.9
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHH
Q 006981 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271 (623)
Q Consensus 192 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 271 (623)
+.+|-...=..+...+...|-...|..+|++.. .|.-++.+|+..|+..+|..+.....+ -+|++..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~l 459 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRL 459 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchh
Confidence 344444444455666667777777777776653 345566667777777777777666665 2566677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006981 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (623)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (623)
|..+.+......-+++|.++++..-.. .-..+.....+.++++++.+.|+.-.+.+ +....+|-.+..+..+
T Consensus 460 yc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALq 531 (777)
T KOG1128|consen 460 YCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQ 531 (777)
T ss_pred HHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHH
Confidence 777777766666677777777654332 01111111223567777777777665553 3345677777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006981 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431 (623)
Q Consensus 352 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 431 (623)
+++++.|.+.|....... +-+...||.+-.+|.+.|+-.+|...+.+..+.. .-+...|...+-...+.|.+++|++.
T Consensus 532 lek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 532 LEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred HhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHH
Confidence 777777777777766542 2345677878778888887778887777777765 33444555555556677777777777
Q ss_pred HHHHHHC-CCCCCHHHHHHHHHH
Q 006981 432 LSQAKED-GVIPNLVMFKCIIGM 453 (623)
Q Consensus 432 ~~~~~~~-g~~p~~~~~~~li~~ 453 (623)
+.++.+. ....|..+..-++..
T Consensus 610 ~~rll~~~~~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 610 YHRLLDLRKKYKDDEVLLIIVRT 632 (777)
T ss_pred HHHHHHhhhhcccchhhHHHHHH
Confidence 7776542 111244444444433
No 114
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.0046 Score=66.12 Aligned_cols=302 Identities=13% Similarity=0.144 Sum_probs=137.7
Q ss_pred ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 006981 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKG-LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVC 102 (623)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 102 (623)
++.+-..+..+++-.+-..+-+++++++.-.+ .++.+.-...+++-...+. +.....++.++...-|. -.+...+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa---~~ia~ia 1058 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA---PDIAEIA 1058 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc---hhHHHHH
Confidence 34555566778889999999999999987443 3344444443333222111 11112222222221111 0112233
Q ss_pred HcCCChHHHHHHHHHHHHcC---------------------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 006981 103 ASSKDSEGAFQVLRLVQEAG---------------------LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN 161 (623)
Q Consensus 103 ~~~~~~~~A~~~~~~m~~~g---------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 161 (623)
..++-+++|..+|+...-.+ --..+..|..+..+-.+.|.+.+|++-|-+. .|
T Consensus 1059 i~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dD 1132 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DD 1132 (1666)
T ss_pred hhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CC
Confidence 33444455555554331100 0011234444555544555555554444222 13
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHH
Q 006981 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241 (623)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll 241 (623)
...|.-.++...+.|.+++-.+.+...++..-.|... +.||-+|++.+++.+..+++ . -|++.....+.
T Consensus 1133 ps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi----~-----gpN~A~i~~vG 1201 (1666)
T KOG0985|consen 1133 PSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI----A-----GPNVANIQQVG 1201 (1666)
T ss_pred cHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh----c-----CCCchhHHHHh
Confidence 4445555555555555555555444444433333222 23444555555444433322 1 24444444444
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006981 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321 (623)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 321 (623)
+-|...+.++.|.-+|..+ .-|..|...+...|.+..|.+--++. .+..||.-+-.+|...+.+.
T Consensus 1202 drcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFr 1266 (1666)
T KOG0985|consen 1202 DRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFR 1266 (1666)
T ss_pred HHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhh
Confidence 4455555555554444432 23445555555555555555443322 13445555555555544443
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (623)
Q Consensus 322 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (623)
.| +|--.++.....-...|+.-|-..|.+++-..+++.-.
T Consensus 1267 lA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1267 LA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 32 22222223334445556666666666666666665543
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.33 E-value=0.00012 Score=66.12 Aligned_cols=157 Identities=15% Similarity=0.113 Sum_probs=88.7
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006981 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (623)
Q Consensus 98 li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (623)
+-..+...|+-+.+..+....... .+.|....+..+....+.|++..|...|.+..... ++|..+|+.+.-+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccC
Confidence 334445555555555555443322 13344455556666666666666666666665543 4566666666666666666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 006981 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257 (623)
Q Consensus 178 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 257 (623)
++.|..-|.+..+.- .-+....|.+.-.+.-.|+.+.|..++...... -..|..+-..+.-.....|+++.|.++-
T Consensus 150 ~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~---~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 150 FDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS---PAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC---CCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 666666666665542 223445555555566666666666666665542 1235555555666666666666666665
Q ss_pred HHH
Q 006981 258 KMI 260 (623)
Q Consensus 258 ~~~ 260 (623)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 443
No 116
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.00056 Score=61.96 Aligned_cols=119 Identities=13% Similarity=0.163 Sum_probs=53.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----
Q 006981 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ---- 209 (623)
Q Consensus 134 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---- 209 (623)
...|.+.|++++|++...... +......=+..+.+..+++-|.+.+++|.+.. +..|.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 334455555555555444311 22222222233344455555555555554432 33344444444332
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 006981 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264 (623)
Q Consensus 210 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 264 (623)
.+.+.+|.-+|++|..+ ..|+..+.+-...++...|++++|..+++....+.
T Consensus 186 gek~qdAfyifeE~s~k---~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK---TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred chhhhhHHHHHHHHhcc---cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 23344555555555432 34444455545555555555555555555554444
No 117
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=0.0029 Score=63.18 Aligned_cols=355 Identities=13% Similarity=0.087 Sum_probs=193.4
Q ss_pred HhhhHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHH
Q 006981 71 CKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAM 146 (623)
Q Consensus 71 ~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A 146 (623)
..+.|+++.|+.+|-.. .++|.+.|..-..++++.|++++|++=-.+-.+. .|+ ...|+....++.-.|++++|
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHH
Confidence 34568899999999753 3678888998999999999999998877666654 454 67888899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCH--------HHHHHHHHHHHcc-------
Q 006981 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR-SKNVKPDR--------VVFNALITACGQS------- 210 (623)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~--------~~~~~li~~~~~~------- 210 (623)
+.-|.+-++.. +.|...++-|..++... . .+.+.|..-. -.++.-++ ..|..++..+-+.
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999988764 34566677777776111 0 1111111000 00000011 1122222221111
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH-cCChH----HHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCC
Q 006981 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN-AGQVD----RAREVYKMIHK-YNIKGTPEVYTIAINCCSQTGD 284 (623)
Q Consensus 211 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~-~g~~~----~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~ 284 (623)
...+...+....+... .-. .+...-..... ...+. ..........+ .....-..-...+.++..+..+
T Consensus 166 l~d~r~m~a~~~l~~~----~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~ 239 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGV----DEL--LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD 239 (539)
T ss_pred cccHHHHHHHHHHhcC----ccc--cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 0001111111110000 000 00000000000 00000 00000000000 0000001235567788888889
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHhcCCHHH
Q 006981 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY-------SSLMGACSNAKNWQK 357 (623)
Q Consensus 285 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------~~li~~~~~~g~~~~ 357 (623)
+..|.+-+....+.. -+..-++..-.+|...|.+.+....-....+.|-. ...-| ..+..+|.+.++++.
T Consensus 240 f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 240 FETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred HHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 999999998888765 25555666667788888888777776666655421 11122 223346777788999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT-YSILLVACERKDDVEVGLMLLSQAK 436 (623)
Q Consensus 358 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (623)
|...|.+.......|+. ..+....+++++......- +.|.... ...=...+.+.|++..|...+.+++
T Consensus 317 ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 317 AIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred HHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 99999887654333332 2233445566655555443 3444322 2222567889999999999999999
Q ss_pred HCCCCCCHH-HHHHHHHH
Q 006981 437 EDGVIPNLV-MFKCIIGM 453 (623)
Q Consensus 437 ~~g~~p~~~-~~~~li~~ 453 (623)
+.. |+.. .|+----+
T Consensus 386 kr~--P~Da~lYsNRAac 401 (539)
T KOG0548|consen 386 KRD--PEDARLYSNRAAC 401 (539)
T ss_pred hcC--CchhHHHHHHHHH
Confidence 864 6544 44443333
No 118
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.25 E-value=0.0069 Score=60.55 Aligned_cols=406 Identities=11% Similarity=0.126 Sum_probs=247.2
Q ss_pred hhhHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHHHHHHHH
Q 006981 26 SEQLHSYNRLI---RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMS 100 (623)
Q Consensus 26 ~~~~~~~~~l~---~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~ 100 (623)
+.++.+|..|| +...++++++.++++...- |....+....++.-...++++...++|.+-. .-++..|...|+
T Consensus 17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~~F--P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVNVF--PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccCCHHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 45677899999 4568999999999998654 4444444444444455678899999997643 346777887776
Q ss_pred HHHc-CCChHH----HHHHHHHHH-HcCCCCC-HHHHHHHHHH---------HHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 006981 101 VCAS-SKDSEG----AFQVLRLVQ-EAGLKAD-CKLYTTLITT---------CAKSGKVDAMFEVFHEMVNAGIEPNVHT 164 (623)
Q Consensus 101 ~~~~-~~~~~~----A~~~~~~m~-~~g~~~~-~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 164 (623)
--.+ .++... -.+.|+... +.|+.+- -..|+.-+.. +....+++...++|.++....+..=...
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 5443 233322 234444433 3443332 2234444443 3344567778888888876422111112
Q ss_pred HH------HHHHHH-------HhcCCHHHHHHHHHHHHh--CCCCCCHHH---------------HHHHHHHHHccC---
Q 006981 165 YG------ALIDGC-------AKAGQVAKAFGAYGIMRS--KNVKPDRVV---------------FNALITACGQSG--- 211 (623)
Q Consensus 165 ~~------~li~~~-------~~~g~~~~A~~~~~~m~~--~g~~p~~~~---------------~~~li~~~~~~g--- 211 (623)
|+ .=|+-. -+...+..|.++++++.. +|+.....+ |-.+|.-=-..+
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 22 111111 123456778888777653 343322222 433443211111
Q ss_pred ---CH--HHHHHHHHHHhhCCCCCCCCHHHH-HHHH----HHHHHcCC-------hHHHHHHHHHHHhcCCCCCHHHHHH
Q 006981 212 ---AV--DRAFDVLAEMNAEVHPVDPDHITI-GALM----KACANAGQ-------VDRAREVYKMIHKYNIKGTPEVYTI 274 (623)
Q Consensus 212 ---~~--~~A~~~~~~m~~~~~~~~~~~~~~-~~ll----~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~ 274 (623)
.. ....-.+++...- .+..|+.... ...+ +.+...|+ .+++..+++.....-...+..+|..
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~-l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLY-LGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred ccccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 1111222222221 1334443221 1111 22333333 5788888888766544444555655
Q ss_pred HHHHHHhc---CCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 006981 275 AINCCSQT---GDWEFACSVYDDMTKK-GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV-GIISYSSLMGAC 349 (623)
Q Consensus 275 li~~~~~~---g~~~~A~~l~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~ 349 (623)
+...--.. ...+.....++++... ...|+ .+|...+....+..-++.|..+|.+..+.+..+ ++.++++++.-|
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 54432222 2366677777777654 33444 567778888888888999999999999988777 788889999877
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHH
Q 006981 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDVEV 427 (623)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~ 427 (623)
| .++..-|.++|+-=...- .-+..--...+.-+...++-..|..+|++....++.|+ ...|..+|+--+.-|++..
T Consensus 413 c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred h-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 6 567789999998644321 22334445677888888999999999999998877775 4679999999999999999
Q ss_pred HHHHHHHHHH
Q 006981 428 GLMLLSQAKE 437 (623)
Q Consensus 428 a~~~~~~~~~ 437 (623)
..++-+++..
T Consensus 491 i~~lekR~~~ 500 (656)
T KOG1914|consen 491 ILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHH
Confidence 9999888764
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.24 E-value=0.00038 Score=63.05 Aligned_cols=158 Identities=16% Similarity=0.091 Sum_probs=84.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006981 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280 (623)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 280 (623)
..+-..+...|+-+....+...... ....|......++....+.|++..|...|.+..... ++|...|+.+.-+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~---~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI---AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc---cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHH
Confidence 3344444555555555555444332 123333444445555566666666666666665554 555666666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006981 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360 (623)
Q Consensus 281 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 360 (623)
+.|++++|..-|.+..+.... +...++-+.-.+.-.|+.+.|..++......+ .-|..+-..|.......|++++|.+
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHh
Confidence 666666666666665554222 23334444445555566666666666555543 2244555555555566666666665
Q ss_pred HHHH
Q 006981 361 LYEH 364 (623)
Q Consensus 361 ~~~~ 364 (623)
+-.+
T Consensus 224 i~~~ 227 (257)
T COG5010 224 IAVQ 227 (257)
T ss_pred hccc
Confidence 5443
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.24 E-value=0.0068 Score=60.04 Aligned_cols=217 Identities=13% Similarity=0.051 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292 (623)
Q Consensus 213 ~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 292 (623)
+.++...-+.+......-.|+...+...+.+......-..+..++.+..+. .....+--..-.+...|++++|+..+
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~aa~YG~A~~~~~~~~~d~A~~~l 329 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR---GGLAAQYGRALQTYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc---cchHHHHHHHHHHHHhcccchHHHHH
Confidence 344444444544332222344445555554443333333333333333331 11233333344455678888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006981 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG-IISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371 (623)
Q Consensus 293 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 371 (623)
+.+...-.. |...+....+.+.+.++.++|.+.++.+.... |+ ....-.+..+|.+.|+..+|..+++...... +
T Consensus 330 ~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p 405 (484)
T COG4783 330 QPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-P 405 (484)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-C
Confidence 887765322 55666666777888888888888888887763 33 5566677788888888888888888776543 4
Q ss_pred CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHH
Q 006981 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED--GVIPNLVMFKC 449 (623)
Q Consensus 372 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~--g~~p~~~~~~~ 449 (623)
-|...|..|..+|...|+..+|..-.-+ ++...|+++.|...+....+. ...|+..-+..
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~da 467 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQVKLGFPDWARADA 467 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 5677888888888888887777654433 455678888888887777654 23445545555
Q ss_pred HHHHH
Q 006981 450 IIGMC 454 (623)
Q Consensus 450 li~~~ 454 (623)
.|+..
T Consensus 468 ri~~~ 472 (484)
T COG4783 468 RIDQL 472 (484)
T ss_pred HHHHH
Confidence 55543
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.23 E-value=0.00031 Score=63.66 Aligned_cols=98 Identities=10% Similarity=0.090 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHH
Q 006981 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKN--WQKALELYEHMKSIKLKPTVSTMNA 379 (623)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~ 379 (623)
|...|..+...|...|++++|...+++..+.. +.+...+..+..+ +...|+ .++|.+++++..+... .+...+..
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~ 149 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALML 149 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHH
Confidence 33334444444444444444444444443332 1233333333332 123333 2444444444443321 13333444
Q ss_pred HHHHHHcCCChhhHHHHHHHHHH
Q 006981 380 LITALCDGDQLPKTMEVLSDMKS 402 (623)
Q Consensus 380 li~~~~~~g~~~~A~~l~~~m~~ 402 (623)
+...+.+.|++++|+..|+++.+
T Consensus 150 LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 150 LASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444444444444444444433
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.22 E-value=0.00041 Score=62.85 Aligned_cols=120 Identities=13% Similarity=0.139 Sum_probs=68.7
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCC--HHHH
Q 006981 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGHAGK--VEAA 323 (623)
Q Consensus 247 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~-~~~~g~--~~~a 323 (623)
.++.+++...++...+.+ +.+...|..+...|...|++++|...|++..+.... +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344455555555555554 555666666666666666666666666666655432 44445554444 244454 3666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006981 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (623)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (623)
.+++++..+.+ +-+..++..+...+.+.|++++|...|+++.+..
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 66666666654 2345556666666666666666666666665543
No 123
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.21 E-value=8.7e-05 Score=63.48 Aligned_cols=95 Identities=8% Similarity=-0.107 Sum_probs=54.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006981 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (623)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (623)
+..+...+...|++++|...|+...... +.+...|..+..++.+.|++++|...|+...... +.+...+..+..++.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3344455555666666666666655543 3455555666666666666666666666666543 3355555666666666
Q ss_pred cCCHHHHHHHHHHHHhC
Q 006981 175 AGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 175 ~g~~~~A~~~~~~m~~~ 191 (623)
.|+.++|...|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666665544
No 124
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=0.0023 Score=58.90 Aligned_cols=194 Identities=12% Similarity=0.062 Sum_probs=108.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHh
Q 006981 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA-LIDGCAK 174 (623)
Q Consensus 96 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-li~~~~~ 174 (623)
.+.+..+.+..+++.|++++..-.++. +.+....+.|..+|....++..|-..|+++... .|...-|.. -...+-+
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 334444455566777777776666553 335566666777777777777777777777654 344333321 2233445
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHH
Q 006981 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALIT--ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (623)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 252 (623)
.+.+..|+++...|... |+...-..-+. .....+++..+..++++...+ .+..+.+.......+.|+++.
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e-----n~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE-----NEADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC-----CccchhccchheeeccccHHH
Confidence 67777777777666532 12211111111 123456666666666665431 223344444444566777777
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006981 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (623)
Q Consensus 253 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 301 (623)
|.+-|+...+-+--.....||.-+.. .+.++.+.|++...++.++|++
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhh
Confidence 77777776665433334556554443 3556777777777777766653
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.18 E-value=0.0039 Score=61.70 Aligned_cols=242 Identities=14% Similarity=0.097 Sum_probs=162.4
Q ss_pred ChhhhHHHHHHHHhcC-CHHHHHHHHHHHHH---cC-CCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC------CCCH
Q 006981 24 DVSEQLHSYNRLIRQG-RISECIDLLEDMER---KG-LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP------NPTL 92 (623)
Q Consensus 24 ~~~~~~~~~~~l~~~g-~~~~A~~l~~~m~~---~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~ 92 (623)
..+.+..-.+.|.+.| +...-.+.|+++.. .+ -+|.-..+|- ....++.++...-++++ .++.
T Consensus 201 E~eADr~Gi~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~THP------lp~~RIa~lr~ra~q~p~~~~~d~~~~ 274 (484)
T COG4783 201 EQEADRIGITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTHP------LPEERIADLRNRAEQSPPYNKLDSPDF 274 (484)
T ss_pred HHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcCC------CchhHHHHHHHHHHhCCCCCCCCCccH
Confidence 3456677778888998 56666778888874 22 2221111111 22345666666666665 3566
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (623)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (623)
..+...+.+......-..+..++....+. .-..--|..-+ .+...|++++|+..++.+...- +-|...+......+
T Consensus 275 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~ 350 (484)
T COG4783 275 QLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDIL 350 (484)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 66666666554443333333333322221 11223344333 3447889999999999988762 44666677778889
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChH
Q 006981 173 AKAGQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (623)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 251 (623)
.+.++..+|.+.++++... .|+ ....-.+..++.+.|+..+|..++++.... .+.|...|..|..+|...|+..
T Consensus 351 ~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~---~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 351 LEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN---DPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc---CCCCchHHHHHHHHHHHhCchH
Confidence 9999999999999999876 555 556667788999999999999999888764 3566778999999999999887
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 252 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
++..-.. .+|.-.|+++.|...+....+.
T Consensus 426 ~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 426 EALLARA------------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHH------------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 6665444 3456678888888888877765
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.17 E-value=0.0014 Score=71.52 Aligned_cols=144 Identities=11% Similarity=0.006 Sum_probs=98.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCh
Q 006981 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDS 108 (623)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 108 (623)
....+.+.+.+++++|.++.+...+.. |.....+...+.++.+.++.++|..+ .++.......++
T Consensus 35 ~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~~~ 99 (906)
T PRK14720 35 DDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNLKW 99 (906)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccccch
Confidence 333444448999999999999887766 44444444444455555554444333 444445555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (623)
.....+...|... .-+...+..+..+|-+.|+.++|..+|+++.+.. +-|..+.|.+.-.|+.. +.++|.+++.+.
T Consensus 100 ~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 100 AIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred hHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 4455555555553 3345577788888888898899999998888876 55788888888888888 888888888777
Q ss_pred HhC
Q 006981 189 RSK 191 (623)
Q Consensus 189 ~~~ 191 (623)
...
T Consensus 176 V~~ 178 (906)
T PRK14720 176 IYR 178 (906)
T ss_pred HHH
Confidence 643
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.16 E-value=0.0016 Score=70.99 Aligned_cols=239 Identities=8% Similarity=0.032 Sum_probs=143.6
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 006981 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167 (623)
Q Consensus 89 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 167 (623)
+.+...|..|+..+...+++++|.++.+...+. .|+ ...|-.+...+.+.++.+.+..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~--------------- 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N--------------- 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------
Confidence 456778889999998999999999999877665 344 33333344466666765555444 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc
Q 006981 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (623)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~ 247 (623)
++.......++.-+..+...|... .-+...+..+..+|-+.|+.++|..+++++.+-. +-|..+.|.+...|+..
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD---RDNPEIVKKLATSYEEE 163 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHh
Confidence 223333333443333333344433 2244567777888888888888888888887642 44567778888888887
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (623)
Q Consensus 248 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (623)
++++|..++.++..+ |...+++..+.++|.++....+. |...+..++
T Consensus 164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~---------------- 210 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIE---------------- 210 (906)
T ss_pred -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHH----------------
Confidence 888888887776654 55556777777777777765332 222222221
Q ss_pred HHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006981 328 QEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (623)
Q Consensus 328 ~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (623)
+.+... |..--..++-.+-..|-+..+++++..+++.+.+.. +.|.....-++.+|.
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 222111 112223444455555666666777777777766654 234455555555554
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.13 E-value=0.0014 Score=70.61 Aligned_cols=163 Identities=10% Similarity=0.043 Sum_probs=122.6
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006981 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309 (623)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ 309 (623)
...+...+-.|.....+.|.+++|..+++.+.+.. +.+......+...+.+.+++++|+..+++....... +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 34557778888888888999999999999888875 556677888888888999999999999888887543 5566677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 006981 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (623)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 389 (623)
+..++.+.|++++|..+|+++...+ +-+..++..+...+.+.|+.++|...|++..+.. .+....|+..+. +
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------D 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------H
Confidence 7778888899999999999888743 3457788888888888999999999888887643 345556655543 2
Q ss_pred hhhHHHHHHHHHH
Q 006981 390 LPKTMEVLSDMKS 402 (623)
Q Consensus 390 ~~~A~~l~~~m~~ 402 (623)
...-..+++++.-
T Consensus 232 ~~~~~~~~~~~~~ 244 (694)
T PRK15179 232 LNADLAALRRLGV 244 (694)
T ss_pred HHHHHHHHHHcCc
Confidence 3344555666543
No 129
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.10 E-value=4.8e-06 Score=51.50 Aligned_cols=33 Identities=30% Similarity=0.665 Sum_probs=24.5
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCC
Q 006981 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (623)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 408 (623)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 130
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.08 E-value=0.00031 Score=60.05 Aligned_cols=90 Identities=17% Similarity=0.033 Sum_probs=39.3
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 006981 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (623)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 283 (623)
...+...|++++|...|....... +.+...+..+..++.+.|++++|...|+.....+ +.+...+..+..++.+.|
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQ---PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 333444444444444444443321 2233344444444444444444444444444433 334444444444444444
Q ss_pred CHHHHHHHHHHHHh
Q 006981 284 DWEFACSVYDDMTK 297 (623)
Q Consensus 284 ~~~~A~~l~~~m~~ 297 (623)
++++|...|+...+
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444443
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.07 E-value=0.0021 Score=69.36 Aligned_cols=236 Identities=10% Similarity=0.094 Sum_probs=165.2
Q ss_pred CHHHHHHHHHHHHHcCChhHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006981 126 DCKLYTTLITTCAKSGKVDAM-FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (623)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 204 (623)
++.....+=.+.+..|..++| .+++.+..+ ++....+-....+++.-...... ..+.+...+..|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHH
Confidence 344444444556667777766 455555542 33333333333333333333322 2355688888999
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 006981 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (623)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 283 (623)
....+.|..++|..+++...+. .|| ......+...+.+.+++++|....++....+ +.+......+..++.+.|
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~----~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g 168 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQR----FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIG 168 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999863 566 4566778889999999999999999999987 777888999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006981 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (623)
Q Consensus 284 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (623)
++++|..+|++....+.. +..++..+...+-..|+.++|...|+...+.. .+...-|+.++ +++..-...++
T Consensus 169 ~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~ 240 (694)
T PRK15179 169 QSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLNADLAALR 240 (694)
T ss_pred chHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHH
Confidence 999999999999985433 57888899999999999999999999998763 34445555544 33344455666
Q ss_pred HHHhCC----CCCCHHHHHHHHHHHHcC
Q 006981 364 HMKSIK----LKPTVSTMNALITALCDG 387 (623)
Q Consensus 364 ~m~~~~----~~~~~~~~~~li~~~~~~ 387 (623)
++.-.+ ..-...+...+|.-|.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 241 RLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 654332 222334455566656543
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.0059 Score=55.58 Aligned_cols=116 Identities=16% Similarity=0.107 Sum_probs=53.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChh
Q 006981 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391 (623)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 391 (623)
+..+.+.|.+.++.|.+-. +..+.+.|..++.+ .+.+.+|.-+|++|.+. ..|+..+.+.+..++...|+++
T Consensus 149 k~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~e 224 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYE 224 (299)
T ss_pred HHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHH
Confidence 3444445555555444432 23333333333322 33455555555555442 2355555555555555555666
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHH
Q 006981 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV-GLMLLSQAK 436 (623)
Q Consensus 392 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~-a~~~~~~~~ 436 (623)
+|..++++.+.+. .-+..|...++-+-...|...+ ..+.+.++.
T Consensus 225 eAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 225 EAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 6666555555442 2234444444444444444322 233344444
No 133
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.03 E-value=7e-06 Score=50.75 Aligned_cols=33 Identities=42% Similarity=0.743 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006981 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196 (623)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 196 (623)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.96 E-value=0.00043 Score=58.67 Aligned_cols=94 Identities=15% Similarity=0.165 Sum_probs=46.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006981 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (623)
Q Consensus 130 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (623)
...+...+...|++++|.+.|+.+...+ +.+...|..+...+.+.|++++|...+++....+ +.+...+..+...+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 3444444555555555555555554432 2344455555555555555555555555544432 2234444444445555
Q ss_pred cCCHHHHHHHHHHHhh
Q 006981 210 SGAVDRAFDVLAEMNA 225 (623)
Q Consensus 210 ~g~~~~A~~~~~~m~~ 225 (623)
.|+.++|.+.|+...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555443
No 135
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.96 E-value=1.1e-05 Score=49.53 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=15.4
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHCCCCC
Q 006981 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (623)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 407 (623)
+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444444
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.92 E-value=1.5e-05 Score=48.79 Aligned_cols=33 Identities=45% Similarity=0.794 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006981 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195 (623)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 195 (623)
.+|+++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666665554
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.91 E-value=0.00045 Score=58.56 Aligned_cols=108 Identities=9% Similarity=0.120 Sum_probs=86.6
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (623)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (623)
.+......+...+...|++++|.+.++.+...+ +.+...+..+...+.+.|++++|...++...+.+ +.+..++..+.
T Consensus 15 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la 92 (135)
T TIGR02552 15 EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAA 92 (135)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 344556667777888899999999999988765 5577888889999999999999999999888765 55677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006981 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201 (623)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 201 (623)
..|...|++++|...|+...+. .|+...+.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 8999999999999999988876 45544433
No 138
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.87 E-value=0.064 Score=57.91 Aligned_cols=183 Identities=12% Similarity=-0.011 Sum_probs=114.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 006981 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256 (623)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 256 (623)
+...|+..|-+..+.. ..=...|..|...|+..-+...|.+.|....+-+ ..|........+.|++..+++.|..+
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD---atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD---ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---chhhhhHHHHHHHhhccccHHHHHHH
Confidence 3566666665555442 1124567777777777777778888887775432 23455666777888888888888777
Q ss_pred HHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006981 257 YKMIHKYNIKGT--PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (623)
Q Consensus 257 ~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (623)
.-..-+.. +.- ...|....-.|.+.++...|..-|+...+..+. |...|..+.++|.+.|++..|.++|.+.....
T Consensus 549 ~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 549 CLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 33322221 111 122333444566777788888888877776554 77778888888888888888888887776543
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 335 ISVGI-ISYSSLMGACSNAKNWQKALELYEHMKS 367 (623)
Q Consensus 335 ~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (623)
|+. ..---...+-+..|.+.+|...+..+..
T Consensus 627 --P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 --PLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred --cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 321 1111222334567778888877776653
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.78 E-value=0.00093 Score=66.54 Aligned_cols=125 Identities=16% Similarity=0.113 Sum_probs=84.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Q 006981 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244 (623)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~ 244 (623)
-.+|+..+...++++.|+.+|+++.+.. |+. ...+++.+...++-.+|.+++.+.... .+.+...+..-...+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~---~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE---NPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 3455556666777888888888877663 443 334666666677777777777777653 233455555556667
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (623)
Q Consensus 245 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (623)
.+.++++.|..+.+++.+.. +.+..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 77777777777777777654 44556777777777777777777777776653
No 140
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.77 E-value=0.00053 Score=68.51 Aligned_cols=125 Identities=14% Similarity=0.131 Sum_probs=87.4
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHH
Q 006981 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (623)
Q Consensus 193 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 272 (623)
.+.+......+++.+....+++.+..++.+..........-..|..++++.|.+.|..+.+..+++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 34566666677777777777777777777776542222222235567788888888888888888777778888888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006981 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (623)
Q Consensus 273 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 317 (623)
|.|++.+.+.|++..|.++...|..++...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888887777666655666666666666554
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.77 E-value=0.00061 Score=67.84 Aligned_cols=126 Identities=10% Similarity=0.061 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (623)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (623)
..-..+++.+...++++.|+.+++++.+.. |+. ...++..+...++-.+|.+++.+..+.. +.+..........+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344556677777888999999999988764 543 3447777777888888888888888653 44677777777888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 006981 173 AKAGQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNA 225 (623)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (623)
.+.++.+.|+.+.+++... .|+ ..+|..|..+|.+.|+++.|+..++.+..
T Consensus 245 l~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8889999999999988876 444 45888999999999999999988887754
No 142
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=3.6e-05 Score=45.92 Aligned_cols=29 Identities=34% Similarity=0.671 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHCC
Q 006981 376 TMNALITALCDGDQLPKTMEVLSDMKSLG 404 (623)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g 404 (623)
+|+.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.69 E-value=0.0033 Score=53.91 Aligned_cols=86 Identities=20% Similarity=0.204 Sum_probs=37.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc
Q 006981 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDR--VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (623)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~ 247 (623)
..+...|++++|...|+........|+. .....|...+...|++++|+..++..... ......+......|.+.
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~----~~~~~~~~~~Gdi~~~~ 131 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE----AFKALAAELLGDIYLAQ 131 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc----chHHHHHHHHHHHHHHC
Confidence 4444455555555555555444311111 12222344444455555555555443211 12223344444555555
Q ss_pred CChHHHHHHHHH
Q 006981 248 GQVDRAREVYKM 259 (623)
Q Consensus 248 g~~~~A~~~~~~ 259 (623)
|+.++|...|+.
T Consensus 132 g~~~~A~~~y~~ 143 (145)
T PF09976_consen 132 GDYDEARAAYQK 143 (145)
T ss_pred CCHHHHHHHHHH
Confidence 555555555543
No 144
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.69 E-value=0.00062 Score=68.04 Aligned_cols=121 Identities=16% Similarity=0.074 Sum_probs=63.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006981 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343 (623)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 343 (623)
+.+......+++.+....+.+++..++.+.... ....-..|..++|+.|.+.|..+.++.++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 344445555555555555555555555555543 111112233455666666666666666665555556666666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006981 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (623)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (623)
.|++.+.+.|++..|.++...|..++...+..|+.-.+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 6666666666666666655555544444444444443443333
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.66 E-value=0.0035 Score=53.79 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=9.0
Q ss_pred HHHHHcCChHHHHHHHHHHHh
Q 006981 242 KACANAGQVDRAREVYKMIHK 262 (623)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~~~~ 262 (623)
..+...|++++|...|+.+..
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHh
Confidence 333444444444444444443
No 146
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.66 E-value=5.4e-05 Score=45.15 Aligned_cols=29 Identities=38% Similarity=0.673 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006981 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (623)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (623)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 147
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.62 E-value=0.00098 Score=52.10 Aligned_cols=77 Identities=17% Similarity=0.390 Sum_probs=46.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcC--------ChhHHHHHHHHHHHCCCCCCHHHHHH
Q 006981 97 MLMSVCASSKDSEGAFQVLRLVQEAGL-KADCKLYTTLITTCAKSG--------KVDAMFEVFHEMVNAGIEPNVHTYGA 167 (623)
Q Consensus 97 ~li~~~~~~~~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~~~~~~~~~ 167 (623)
..|.-|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344455555777777777777777777 677777777777665542 12234455555555555566666655
Q ss_pred HHHHHH
Q 006981 168 LIDGCA 173 (623)
Q Consensus 168 li~~~~ 173 (623)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 555443
No 148
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=0.052 Score=49.25 Aligned_cols=185 Identities=16% Similarity=0.158 Sum_probs=93.5
Q ss_pred ChHHHHHHHHHHHH---cC-CCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHH
Q 006981 107 DSEGAFQVLRLVQE---AG-LKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH-TYGALIDGCAKAGQVAK 180 (623)
Q Consensus 107 ~~~~A~~~~~~m~~---~g-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~ 180 (623)
+.++.++++..+.. .| ..++.. .|-.++-+....|+.+.|...++.+...- |.+. +-..-.-.+-..|++++
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhh
Confidence 45555555555542 22 334433 34445555556666666666666665542 2221 11111112334566666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 006981 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (623)
Q Consensus 181 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 260 (623)
|+++++.+.+.+ +.|.+++--=+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~---F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK---FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 666666666654 444555544444444445555555555555542 4556666666666666666666666666666
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Q 006981 261 HKYNIKGTPEVYTIAINCCSQTG---DWEFACSVYDDMTKK 298 (623)
Q Consensus 261 ~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~ 298 (623)
.-.. |.++-.+..+...+.-.| +.+-+.+.|.+..+.
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 5543 333333444444333222 334455555555443
No 149
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=0.053 Score=49.21 Aligned_cols=82 Identities=17% Similarity=0.116 Sum_probs=31.7
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006981 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (623)
Q Consensus 247 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 326 (623)
.|++++|.++++.+.+.+ +.|..++-.-+...-..|+.-+|++-+.+..+.-. .|...|.-+-..|...|++++|.-.
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~-~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM-NDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 344444444444444443 33333333333333333333344433333333211 1333333333333333333333333
Q ss_pred HHHH
Q 006981 327 LQEA 330 (623)
Q Consensus 327 ~~~~ 330 (623)
++++
T Consensus 177 lEE~ 180 (289)
T KOG3060|consen 177 LEEL 180 (289)
T ss_pred HHHH
Confidence 3333
No 150
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.55 E-value=0.0012 Score=51.53 Aligned_cols=81 Identities=17% Similarity=0.358 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHH
Q 006981 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNVHTYGALIDGCAKAG--------QVAKAFGAYGIMRSKNVKPDRVV 199 (623)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~ 199 (623)
|....|.-+...+++.....+|+.+++.|+ -|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344556666677999999999999999998 889999999998877643 24467788888888888888888
Q ss_pred HHHHHHHHHc
Q 006981 200 FNALITACGQ 209 (623)
Q Consensus 200 ~~~li~~~~~ 209 (623)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.55 E-value=0.0035 Score=51.49 Aligned_cols=21 Identities=19% Similarity=0.080 Sum_probs=8.3
Q ss_pred HHHHHHccCCHHHHHHHHHHH
Q 006981 203 LITACGQSGAVDRAFDVLAEM 223 (623)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m 223 (623)
+..++.+.|+++.|.+.|+.+
T Consensus 45 l~~~~~~~~~~~~A~~~~~~~ 65 (119)
T TIGR02795 45 LGEAYYAQGKYADAAKAFLAV 65 (119)
T ss_pred HHHHHHhhccHHHHHHHHHHH
Confidence 333333334444444444333
No 152
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.50 E-value=0.21 Score=53.61 Aligned_cols=221 Identities=10% Similarity=0.032 Sum_probs=116.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHcCCChHH
Q 006981 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEG 110 (623)
Q Consensus 34 ~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~ 110 (623)
-++..+++..|++...++.++- |.......+-+-...+.|..++|..+++.. ...|..|...+-..|...++.++
T Consensus 18 d~ld~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence 3456777777777777777665 222222221122234556667777666543 23466677777777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------
Q 006981 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA----MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ--------- 177 (623)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--------- 177 (623)
|..++++.... -|+......+..+|.+.+++.+ |.++++.. +.+...+-+.++.+.+.-.
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~-----pk~~yyfWsV~Slilqs~~~~~~~~~~i 168 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNF-----PKRAYYFWSVISLILQSIFSENELLDPI 168 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CcccchHHHHHHHHHHhccCCcccccch
Confidence 77777777654 4556666666777777766654 34444322 2344444444454443211
Q ss_pred -HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 006981 178 -VAKAFGAYGIMRSKN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255 (623)
Q Consensus 178 -~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 255 (623)
..-|.+.++.+.+.+ -.-+..-...-...+-..|.+++|..++..-... .-...+...-+.-+..+...+++.+..+
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~-~l~~~~~~l~~~~~dllk~l~~w~~l~~ 247 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAE-KLTSANLYLENKKLDLLKLLNRWQELFE 247 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-hccccchHHHHHHHHHHHHhcChHHHHH
Confidence 234555556655443 1111222222233344556677777766322221 0112222333344555566666666666
Q ss_pred HHHHHHhcC
Q 006981 256 VYKMIHKYN 264 (623)
Q Consensus 256 ~~~~~~~~~ 264 (623)
+-.++...+
T Consensus 248 l~~~Ll~k~ 256 (932)
T KOG2053|consen 248 LSSRLLEKG 256 (932)
T ss_pred HHHHHHHhC
Confidence 666665554
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.50 E-value=0.0022 Score=49.83 Aligned_cols=90 Identities=20% Similarity=0.211 Sum_probs=41.3
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006981 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (623)
Q Consensus 98 li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (623)
+...+...|++++|...++.+.+.. +.+...+..+...+...+++++|.+.|+...... +.+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3344444455555555555544432 2223344444444555555555555555544432 2223344444444555555
Q ss_pred HHHHHHHHHHHH
Q 006981 178 VAKAFGAYGIMR 189 (623)
Q Consensus 178 ~~~A~~~~~~m~ 189 (623)
.+.|...+....
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 555555444443
No 154
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.42 E-value=0.26 Score=52.84 Aligned_cols=222 Identities=12% Similarity=0.055 Sum_probs=156.1
Q ss_pred hHHHHHHHHHhhhCC--CCCHHHHHHHHHH--HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 006981 74 QKAIKEAFRFFKLVP--NPTLSTFNMLMSV--CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149 (623)
Q Consensus 74 ~~~~~~A~~~~~~~~--~~~~~~~~~li~~--~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 149 (623)
.+++..|++...+.. .||.. |..++.+ +.+.|+.++|..+++.....+.. |..|...+-.+|...++.++|..+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 466777877776654 34443 4444444 56789999999999888766533 888999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC----------HHHHHHH
Q 006981 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA----------VDRAFDV 219 (623)
Q Consensus 150 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~A~~~ 219 (623)
|+..... .|+......+..+|++.+.+.+-.++=-+|.+. ++-+...|-++++...+.-. ..-|.+.
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 9999876 688888888999999988876544444444332 34456666677776655421 3346666
Q ss_pred HHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 220 ~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
++.+..++ |---+..-...-...+...|++++|..++. ...+.-...+...-+.-+..+...++|.+..++-.++...
T Consensus 177 ~~~~l~~~-gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 177 VQKLLEKK-GKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHhccC-CccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 77776653 311222222333445677899999999994 4444444445566677888899999999999999999988
Q ss_pred CCC
Q 006981 299 GVI 301 (623)
Q Consensus 299 ~~~ 301 (623)
|..
T Consensus 256 ~~D 258 (932)
T KOG2053|consen 256 GND 258 (932)
T ss_pred CCc
Confidence 753
No 155
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.38 E-value=0.0028 Score=56.15 Aligned_cols=116 Identities=19% Similarity=0.233 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 006981 89 NPTLSTFNMLMSVCAS-----SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163 (623)
Q Consensus 89 ~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 163 (623)
..|-.+|..++..+.+ .|..+-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 3455555555555543 35666666677777777777777777777776543 2211 011111111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHH
Q 006981 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA-VDRAFDVLAEM 223 (623)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m 223 (623)
.- .-.+.+-|++++++|...|+-||..++..++..+++.+. ..+..++.-.|
T Consensus 113 ------~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm 165 (228)
T PF06239_consen 113 ------MH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM 165 (228)
T ss_pred ------cc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 00 123345677777777777777777777777777776654 23333433333
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.38 E-value=0.0042 Score=48.11 Aligned_cols=7 Identities=29% Similarity=0.259 Sum_probs=2.5
Q ss_pred CHHHHHH
Q 006981 284 DWEFACS 290 (623)
Q Consensus 284 ~~~~A~~ 290 (623)
++++|.+
T Consensus 49 ~~~~a~~ 55 (100)
T cd00189 49 KYEEALE 55 (100)
T ss_pred HHHHHHH
Confidence 3333333
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.38 E-value=0.008 Score=49.31 Aligned_cols=99 Identities=14% Similarity=0.058 Sum_probs=50.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CCHHHHHHHHH
Q 006981 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK--GTPEVYTIAIN 277 (623)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~ 277 (623)
+..+...+.+.|++++|.+.|..+.....+-......+..+..++.+.|+++.|...|+.+...... ....++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3444455555666666666666655431110111223444555566666666666666665543211 12344555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 006981 278 CCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 278 ~~~~~g~~~~A~~l~~~m~~~ 298 (623)
.+.+.|++++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 566666666666666665554
No 158
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.37 E-value=0.0041 Score=55.14 Aligned_cols=116 Identities=19% Similarity=0.312 Sum_probs=81.1
Q ss_pred CCCHHHHHHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 006981 124 KADCKLYTTLITTCAKS-----GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198 (623)
Q Consensus 124 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 198 (623)
..|-.+|..+++.+.+. |.++-....+..|.+.|++.|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~---------- 111 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE---------- 111 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH----------
Confidence 45677888888887754 6677777888888888888899999988887765 3332 11112111
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHH
Q 006981 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-DRAREVYKMI 260 (623)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~A~~~~~~~ 260 (623)
..-| -.+-+-|++++++|.. .|+-||..++..+++.+++.+.. .+..++.--|
T Consensus 112 -----F~hy--p~Qq~c~i~lL~qME~--~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm 165 (228)
T PF06239_consen 112 -----FMHY--PRQQECAIDLLEQMEN--NGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM 165 (228)
T ss_pred -----hccC--cHHHHHHHHHHHHHHH--cCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 1111 2345778999999987 58999999999999999998863 3444444434
No 159
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.35 E-value=0.25 Score=51.29 Aligned_cols=38 Identities=13% Similarity=0.081 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHH
Q 006981 413 SILLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCI 450 (623)
Q Consensus 413 ~~ll~a~~~~g~~~~a~~~~~~~~~~-g~~p~~~~~~~l 450 (623)
..|..--...|.++.|.+.--.+.+. .+-|...+|+.|
T Consensus 1025 milAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySll 1063 (1189)
T KOG2041|consen 1025 MILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLL 1063 (1189)
T ss_pred HHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHH
Confidence 33334445578888887766555543 566666677654
No 160
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.32 E-value=0.0059 Score=58.78 Aligned_cols=81 Identities=14% Similarity=0.110 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 006981 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT---PEVYTIAINCCSQTGDWEFAC 289 (623)
Q Consensus 213 ~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~ 289 (623)
.+.|.++|+...+. +..+...|...++.+.+.++.+.|+.+|++.... +.++ ...|...+..=.+.|+.+.+.
T Consensus 52 ~~~A~~Ife~glk~---f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~ 127 (280)
T PF05843_consen 52 PKRARKIFERGLKK---FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVR 127 (280)
T ss_dssp HHHHHHHHHHHHHH---HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHH
T ss_pred HHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 33344444444432 2233334444444444444444444444444333 1111 135555555555555555555
Q ss_pred HHHHHHHh
Q 006981 290 SVYDDMTK 297 (623)
Q Consensus 290 ~l~~~m~~ 297 (623)
++.+++.+
T Consensus 128 ~v~~R~~~ 135 (280)
T PF05843_consen 128 KVEKRAEE 135 (280)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
No 161
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.25 E-value=0.0073 Score=58.15 Aligned_cols=131 Identities=15% Similarity=0.241 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 006981 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277 (623)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 277 (623)
.+|..+++..-+.+..+.|.++|.+..+. .....+++...+++. |...++.+.|.++|+...+. ++.+...|...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~-~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD-KRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC-CCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 46777888888888888888888888753 223334333333332 23346667788888888776 4667788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 278 CCSQTGDWEFACSVYDDMTKKGVIPDE----VFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (623)
Q Consensus 278 ~~~~~g~~~~A~~l~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (623)
.+.+.++.+.|..+|++.... .|.. ..|...++.=.+.|+++....+.+++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888888765 2333 47888888888888888888888888775
No 162
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.25 E-value=0.066 Score=51.77 Aligned_cols=151 Identities=12% Similarity=0.141 Sum_probs=83.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHH
Q 006981 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA-KNWQKALELYEHMKS----IKLKPT--VSTMNALIT 382 (623)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~----~~~~~~--~~~~~~li~ 382 (623)
.+..|...|++..|-..+..+ ...|.+. |++++|.+.|++..+ .+ .+. ..++..+..
T Consensus 100 A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH
Confidence 344566777777765555544 3345566 778888887776643 12 111 234566777
Q ss_pred HHHcCCChhhHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHH
Q 006981 383 ALCDGDQLPKTMEVLSDMKSLGLC-----PNTI-TYSILLVACERKDDVEVGLMLLSQAKED--GVIPN--LVMFKCIIG 452 (623)
Q Consensus 383 ~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~--g~~p~--~~~~~~li~ 452 (623)
.+.+.|++++|.++|++....-.. .+.. .|...+-.+...|++..|.+.+++.... ++..+ ......||+
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~ 243 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLE 243 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 888999999999999988764322 2222 2333344667789999999999988753 34333 233455566
Q ss_pred HHHhcHHHHHHhhHhhhhccCCCccc
Q 006981 453 MCSRRYEKARTLNEHVLSFNSGRPQI 478 (623)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~~~~~~~~~ 478 (623)
+|-. .....+.+++..|+.+...+
T Consensus 244 A~~~--~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 244 AYEE--GDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp HHHT--T-CCCHHHHCHHHTTSS---
T ss_pred HHHh--CCHHHHHHHHHHHcccCccH
Confidence 5432 01122344555566655443
No 163
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.25 E-value=0.0052 Score=51.97 Aligned_cols=82 Identities=13% Similarity=0.060 Sum_probs=43.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHcCCChHHHHH
Q 006981 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQ 113 (623)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~A~~ 113 (623)
..|++++|..+|+-+..-+ |++..+...++..+...|++.+|+..|... .+.|+..+-.+...+...|+.+.|.+
T Consensus 47 ~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~ 124 (157)
T PRK15363 47 EVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIK 124 (157)
T ss_pred HCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 5566666666666555555 455555555555555555555555555542 23344445555555555555555555
Q ss_pred HHHHHHH
Q 006981 114 VLRLVQE 120 (623)
Q Consensus 114 ~~~~m~~ 120 (623)
.|+....
T Consensus 125 aF~~Ai~ 131 (157)
T PRK15363 125 ALKAVVR 131 (157)
T ss_pred HHHHHHH
Confidence 5554443
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.18 E-value=0.012 Score=58.99 Aligned_cols=89 Identities=13% Similarity=0.067 Sum_probs=53.9
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006981 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180 (623)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 180 (623)
.+...|+++.|++.|+++.+.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 3445566666666666666554 3445566666666666666666666666666543 2345556666666666666666
Q ss_pred HHHHHHHHHhC
Q 006981 181 AFGAYGIMRSK 191 (623)
Q Consensus 181 A~~~~~~m~~~ 191 (623)
|+..|++..+.
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 66666666654
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.15 E-value=0.012 Score=58.75 Aligned_cols=85 Identities=12% Similarity=0.028 Sum_probs=36.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHH
Q 006981 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395 (623)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 395 (623)
..|++++|++.|.++.+.. +.+...|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|+.
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3344444444444444432 2233344444444444444444444444444332 1233344444444444444444444
Q ss_pred HHHHHHH
Q 006981 396 VLSDMKS 402 (623)
Q Consensus 396 l~~~m~~ 402 (623)
.|++.++
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 4444443
No 166
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.10 E-value=0.017 Score=48.90 Aligned_cols=90 Identities=11% Similarity=0.038 Sum_probs=44.4
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006981 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (623)
Q Consensus 98 li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (623)
+...+...|++++|..+|+.+.... +-+..-|-.|.-++-..|++++|+..|....... +-|...+-.+..++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 3334444555555555555554433 2233344445555555555555555555555443 2344445555555555555
Q ss_pred HHHHHHHHHHHH
Q 006981 178 VAKAFGAYGIMR 189 (623)
Q Consensus 178 ~~~A~~~~~~m~ 189 (623)
.+.|.+.|+..+
T Consensus 119 ~~~A~~aF~~Ai 130 (157)
T PRK15363 119 VCYAIKALKAVV 130 (157)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.08 E-value=0.0011 Score=50.77 Aligned_cols=80 Identities=16% Similarity=0.262 Sum_probs=39.6
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 006981 352 AKNWQKALELYEHMKSIKLK-PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGL 429 (623)
Q Consensus 352 ~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~ 429 (623)
.|+++.|..+++++.+.... ++...|..+..+|.+.|++++|+.++++ .+ ..|+. .....+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 35566666666666544321 1233344456666666666666666655 21 12222 22233345566666666666
Q ss_pred HHHHH
Q 006981 430 MLLSQ 434 (623)
Q Consensus 430 ~~~~~ 434 (623)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66553
No 168
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.07 E-value=0.0013 Score=50.24 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=31.2
Q ss_pred CChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006981 106 KDSEGAFQVLRLVQEAGLK-ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (623)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (623)
|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..+++. .+.+ +.+....-.+..++.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4444555555554443211 1222233344445555555555555544 1111 11122222334444455555555544
Q ss_pred HH
Q 006981 185 YG 186 (623)
Q Consensus 185 ~~ 186 (623)
|+
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.06 E-value=0.03 Score=49.61 Aligned_cols=93 Identities=11% Similarity=0.088 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 168 (623)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 445677777788888999999999988876543222 3577788888888999999999888888753 3345666677
Q ss_pred HHHHHhcCCHHHHHHH
Q 006981 169 IDGCAKAGQVAKAFGA 184 (623)
Q Consensus 169 i~~~~~~g~~~~A~~~ 184 (623)
...+...|+...+..-
T Consensus 113 g~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 113 AVIYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHHHcCChHhHhhC
Confidence 7777777775554433
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.03 E-value=0.04 Score=48.82 Aligned_cols=61 Identities=13% Similarity=0.030 Sum_probs=27.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGT--PEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (623)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (623)
+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444445555555555554443321111 23444444444444444444444444443
No 171
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.01 E-value=0.19 Score=47.11 Aligned_cols=177 Identities=9% Similarity=-0.018 Sum_probs=98.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006981 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVY---TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (623)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 316 (623)
....+.+.|++++|.+.|+.+.... +.+...- -.+..+|.+.+++++|...+++..+....-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3444556677777777777776653 2222322 34556667777777777777777765332222233333333221
Q ss_pred --cC---------------C---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 006981 317 --AG---------------K---VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376 (623)
Q Consensus 317 --~g---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 376 (623)
.+ + ...|...|+. ++.-|-...-..+|...+..+... -...
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~---------------li~~yP~S~ya~~A~~rl~~l~~~----la~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSK---------------LVRGYPNSQYTTDATKRLVFLKDR----LAKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHH---------------HHHHCcCChhHHHHHHHHHHHHHH----HHHH
Confidence 00 1 1223333333 333333344455555554444320 0111
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 377 MNALITALCDGDQLPKTMEVLSDMKSL--GLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (623)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (623)
--.+..-|.+.|.+..|..-++.+.+. +.+........+..+|...|..++|.++...+.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 124455688888888888888888864 222345566677788888999888888776553
No 172
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.99 E-value=0.59 Score=48.75 Aligned_cols=59 Identities=8% Similarity=0.048 Sum_probs=33.6
Q ss_pred HHHHHHH--HHHHHcCCChhhHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 374 VSTMNAL--ITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDDVEVGLMLL 432 (623)
Q Consensus 374 ~~~~~~l--i~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 432 (623)
...|..| .+-....|.++.|++.--.+.+ ..+-|....|+.+.-+.+....+...-+.|
T Consensus 1019 AEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAf 1080 (1189)
T KOG2041|consen 1019 AEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAF 1080 (1189)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHH
Confidence 3344444 4445567888888876544443 235677777877665544444444443444
No 173
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.99 E-value=0.0078 Score=55.93 Aligned_cols=94 Identities=14% Similarity=0.151 Sum_probs=48.4
Q ss_pred hHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 006981 74 QKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150 (623)
Q Consensus 74 ~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 150 (623)
.+++.+|+..|.+.. +.|.+-|..-..+|++.|.++.|++-.+..+..+ +.-..+|..|-.+|...|++++|.+.|
T Consensus 94 ~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~~ay 172 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAIEAY 172 (304)
T ss_pred hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 345555555554432 3455555555555555555555555555555432 222445555556666666666666655
Q ss_pred HHHHHCCCCCCHHHHHHHHH
Q 006981 151 HEMVNAGIEPNVHTYGALID 170 (623)
Q Consensus 151 ~~m~~~g~~~~~~~~~~li~ 170 (623)
++.++. .|+-.+|-.=+.
T Consensus 173 kKaLel--dP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 173 KKALEL--DPDNESYKSNLK 190 (304)
T ss_pred Hhhhcc--CCCcHHHHHHHH
Confidence 555543 444444443333
No 174
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.98 E-value=0.16 Score=47.73 Aligned_cols=58 Identities=10% Similarity=0.004 Sum_probs=39.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 006981 344 SLMGACSNAKNWQKALELYEHMKSIK--LKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (623)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (623)
.+...|.+.|.+..|..-|+.+.+.- .+........++.+|...|..++|.+....+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 45566778888888888888777531 12233455567788888888888877766554
No 175
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.29 Score=44.80 Aligned_cols=144 Identities=14% Similarity=0.140 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH----
Q 006981 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL---- 345 (623)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l---- 345 (623)
.+.+.++..+.-.|.+.-...++.+..+.....+....+.+.+.-.+.|+.+.|...|++..+..-..|..+.+.+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 3456667777777777777888888877765667777788888888888888888888877665333333333333
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 346 -MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416 (623)
Q Consensus 346 -i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 416 (623)
...|.-.+++..|...+.++.... ..|....|.-.-++.-.|+..+|++.++.|... .|...+-.+++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 334556777888888887777654 235555554444444578888888888888874 45555544433
No 176
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.96 E-value=0.055 Score=56.70 Aligned_cols=63 Identities=14% Similarity=0.057 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 373 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
+...|.++.......|++++|...++++.+. .|+...|..+...+...|+.++|...+++...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455655555555567777777777777664 46666677777777777777777777777665
No 177
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.93 E-value=0.003 Score=45.87 Aligned_cols=52 Identities=21% Similarity=0.241 Sum_probs=38.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC
Q 006981 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (623)
Q Consensus 35 l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (623)
|++.|++++|+++|+++.... |.+..+...++.++...|++++|.+.++.+.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred ChhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467788888888888888777 5666666677777777777777777777765
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.91 E-value=0.019 Score=50.68 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 006981 236 TIGALMKACANAGQVDRAREVYKMIHK 262 (623)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (623)
++..+...+...|++++|...++....
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 179
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.33 Score=44.43 Aligned_cols=134 Identities=10% Similarity=0.005 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH---
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL--- 168 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l--- 168 (623)
....+.+++.+...|.+.-...++....+...+.++.....|.+.-.+.|+.+.|...|+...+..-..|..+.+.+
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 34566777777788888888888888888776777888888888888889999998888877653323343334333
Q ss_pred --HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 006981 169 --IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (623)
Q Consensus 169 --i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (623)
...|.-.+++..|...|.+..... +.|++.-|.-.-+..-.|+..+|.+.++.|...
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334555677888888888777654 334455454444444567888888888888764
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.90 E-value=0.023 Score=50.18 Aligned_cols=81 Identities=9% Similarity=0.024 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA--DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (623)
...|..+...+...|++++|+..|+........+ ...++..+...+...|++++|++.++...... +....+++.+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3445666666666777777777777776543222 12466667777777777777777777766542 22344455555
Q ss_pred HHHH
Q 006981 170 DGCA 173 (623)
Q Consensus 170 ~~~~ 173 (623)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5555
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.85 E-value=0.095 Score=54.98 Aligned_cols=60 Identities=15% Similarity=0.073 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 006981 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (623)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (623)
..|.++.-.+...|++++|...+++....+ |+...|..+...+...|+.++|.+.+.+..
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444444455555555555555442 344445555555555555555555555444
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.80 E-value=0.0052 Score=44.59 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=22.6
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 006981 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (623)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (623)
.|++++|+++|+.+.+.. +-+...+..+..+|.+.|++++|.++++.+...
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444444444444432 223444444444444444444444444444443
No 183
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.79 E-value=0.59 Score=45.68 Aligned_cols=109 Identities=12% Similarity=0.101 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006981 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (623)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 350 (623)
+.+..|.-+...|+...|.++-.+. -.||...|-..+.+++..+++++-..+-.. +-++.-|-.++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 3444455566667766666664443 135777777777777777777766554321 123456677777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHH
Q 006981 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (623)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 399 (623)
+.|+..+|......+. +..-+..|.+.|++.+|.+.-.+
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777776665521 13456666777777777665443
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.78 E-value=0.068 Score=43.59 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=24.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 006981 171 GCAKAGQVAKAFGAYGIMRSKNVKPD--RVVFNALITACGQSGAVDRAFDVLAEMNA 225 (623)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (623)
++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..++++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444555555555555554443322 12233344444445555555555554443
No 185
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.76 E-value=0.12 Score=49.99 Aligned_cols=85 Identities=20% Similarity=0.228 Sum_probs=36.4
Q ss_pred CChHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHh
Q 006981 248 GQVDRAREVYKMIHKY----NIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-----PDEV-FLSALIDFAGH 316 (623)
Q Consensus 248 g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-----p~~~-~~~~li~~~~~ 316 (623)
|+++.|.+.|++..+. +.+ .-..++..+...+.+.|++++|.++|++....... .+.. .+...+-.+..
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 5556666555554332 100 00123445555566666666666666665543221 1111 11122223344
Q ss_pred cCCHHHHHHHHHHHHH
Q 006981 317 AGKVEAAFEILQEAKN 332 (623)
Q Consensus 317 ~g~~~~a~~~~~~~~~ 332 (623)
.|+...|...++....
T Consensus 209 ~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 209 MGDYVAARKALERYCS 224 (282)
T ss_dssp TT-HHHHHHHHHHHGT
T ss_pred cCCHHHHHHHHHHHHh
Confidence 5555555555555543
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.71 E-value=0.12 Score=42.24 Aligned_cols=89 Identities=18% Similarity=0.126 Sum_probs=55.6
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHH
Q 006981 100 SVCASSKDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN----VHTYGALIDGCA 173 (623)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~ 173 (623)
.++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..++++.... .|+ ......+..++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHH
Confidence 445566777777777777777765543 335556667777777777777777777654 232 122222333556
Q ss_pred hcCCHHHHHHHHHHHHh
Q 006981 174 KAGQVAKAFGAYGIMRS 190 (623)
Q Consensus 174 ~~g~~~~A~~~~~~m~~ 190 (623)
..|+.++|++.+-....
T Consensus 87 ~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA 103 (120)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 67777777777765543
No 187
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.57 Score=45.87 Aligned_cols=176 Identities=14% Similarity=0.079 Sum_probs=105.5
Q ss_pred CCHHHHHHHH-HHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006981 232 PDHITIGALM-KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC--CSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308 (623)
Q Consensus 232 ~~~~~~~~ll-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~ 308 (623)
|.-.++..+- .++...|+.++|..+--.+.+.+- . ..+...+++ +.-.++.+.|...|.+-+..+ |+...-.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~-~--n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA-T--NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc-c--hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHH
Confidence 4434444332 455667888888887777766552 1 233333333 334567788888888777654 4433211
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHH
Q 006981 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI---KLKPTVSTMNALITALC 385 (623)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~ 385 (623)
......+.+..+.+.| +-..+.|++..|.+.+.+.+.. +..++...|.-......
T Consensus 241 ----------~~~~~~k~le~~k~~g------------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~ 298 (486)
T KOG0550|consen 241 ----------SASMMPKKLEVKKERG------------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI 298 (486)
T ss_pred ----------hHhhhHHHHHHHHhhh------------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc
Confidence 1122223333333433 2345788888888888887753 34556666777777788
Q ss_pred cCCChhhHHHHHHHHHHCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHC
Q 006981 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSIL---LVACERKDDVEVGLMLLSQAKED 438 (623)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~a~~~~g~~~~a~~~~~~~~~~ 438 (623)
+.|+..+|+.--++..+ .|..-.-.+ ..++...+++++|.+-++...+.
T Consensus 299 rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 299 RLGRLREAISDCNEALK----IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred ccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88999999888777764 233222222 23445578888888888887764
No 188
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.59 E-value=0.029 Score=52.31 Aligned_cols=102 Identities=16% Similarity=0.154 Sum_probs=60.0
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 006981 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216 (623)
Q Consensus 137 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 216 (623)
+.+.+++.+|+..|.+.++.. +-|.+-|..-..+|++.|.++.|++-.+..+... +--..+|..|-.+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 345666666666666666653 3355556666666666666666666666655542 11234566666666666666666
Q ss_pred HHHHHHHhhCCCCCCCCHHHHHHHHHHH
Q 006981 217 FDVLAEMNAEVHPVDPDHITIGALMKAC 244 (623)
Q Consensus 217 ~~~~~~m~~~~~~~~~~~~~~~~ll~~~ 244 (623)
.+.|.+.+. +.|+..+|..=+...
T Consensus 169 ~~aykKaLe----ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 169 IEAYKKALE----LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHhhhc----cCCCcHHHHHHHHHH
Confidence 666666553 456655655544433
No 189
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.58 E-value=0.84 Score=44.63 Aligned_cols=107 Identities=10% Similarity=0.028 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006981 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (623)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (623)
+.+..|.-+...|....|.++-.+. . -|+...|..-+.+|+..+++++-.++... +..+.-|...+..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 4555566667778888777765543 2 36788888888999999998877765432 234577888888888
Q ss_pred cCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432 (623)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 432 (623)
+.|+..+|..+..++ + + ..-+..|.+.|++.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHH
Confidence 889888888887762 1 1 33445566777777765543
No 190
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.50 E-value=0.24 Score=50.98 Aligned_cols=53 Identities=9% Similarity=0.111 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (623)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (623)
+...+..-+-+...+..|-++|..|-+. .++++.....++|.+|..+-+...+
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 3334444444555666677777766432 2456666777777777777666554
No 191
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.49 E-value=0.13 Score=52.95 Aligned_cols=214 Identities=14% Similarity=0.152 Sum_probs=112.4
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHH---------HHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCC
Q 006981 125 ADCKLYTTLITTCAKSGKVDAMFEVF---------HEMVNAGIEPNVHTYGALIDGCAKAGQ--VAKAFGAYGIMRSKNV 193 (623)
Q Consensus 125 ~~~~~~~~li~~~~~~g~~~~A~~~~---------~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~ 193 (623)
|..+.+.+-+-.|...|.+++|.++- +.+-.. ..+..-++..=.+|.+-.+ +-+.+.-+++++++|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 34444555566677777777775542 111111 1123334555556666554 3445555677888887
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHH------------HHHH
Q 006981 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY------------KMIH 261 (623)
Q Consensus 194 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~------------~~~~ 261 (623)
.|+... +...++-.|.+.+|-++|.+--.+ +-.+.+|.....++.|.++. ++-.
T Consensus 632 ~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~e-----------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA 697 (1081)
T KOG1538|consen 632 TPNDLL---LADVFAYQGKFHEAAKLFKRSGHE-----------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRA 697 (1081)
T ss_pred CchHHH---HHHHHHhhhhHHHHHHHHHHcCch-----------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 777665 344566678888888888764321 12233333333444444433 2111
Q ss_pred h--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----H-HhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 262 K--YNIKGTPEVYTIAINCCSQTGDWEFACSVYDD-----M-TKKGV---IPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (623)
Q Consensus 262 ~--~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~-----m-~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (623)
+ +++... .+....+...|..++|..+..+ | .+-+- ..+..+...+...+-+...+..|-++|..|
T Consensus 698 ~WAr~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~ 773 (1081)
T KOG1538|consen 698 DWARNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKM 773 (1081)
T ss_pred HHhhhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHh
Confidence 1 111111 1223344455665555544311 1 11111 123445555555555666777777787766
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (623)
Q Consensus 331 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (623)
-.. .++++.....+++.+|..+-+...+
T Consensus 774 gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 774 GDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred ccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 432 3567777788888888888777665
No 192
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.097 Score=49.12 Aligned_cols=100 Identities=12% Similarity=0.049 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHH
Q 006981 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG---QVAKAFGAYGIMRSKNVKPDRVVF 200 (623)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~ 200 (623)
+-|...|-.|...|...|+.+.|...|....+.. .+|...+..+..++.... ...++..+|+++.... +-|+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4456666666666666666666666666665542 334444444444433322 2445666666666553 2344444
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhh
Q 006981 201 NALITACGQSGAVDRAFDVLAEMNA 225 (623)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m~~ 225 (623)
..|...+...|++.+|...++.|.+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 4455566666666666666666665
No 193
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.42 E-value=0.013 Score=41.96 Aligned_cols=53 Identities=15% Similarity=0.165 Sum_probs=23.6
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (623)
Q Consensus 136 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (623)
.+.+.|++++|.+.|+++.+.. +-+...+..+..++.+.|++++|...|+++.
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444444444432 2233444444444444444444444444443
No 194
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.38 E-value=0.015 Score=41.65 Aligned_cols=55 Identities=9% Similarity=0.128 Sum_probs=27.8
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006981 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (623)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 155 (623)
..+.+.|++++|...|+.+.+.. +-+...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555555555443 22444555555555555555555555555544
No 195
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.38 E-value=0.58 Score=42.66 Aligned_cols=167 Identities=11% Similarity=0.059 Sum_probs=81.6
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--
Q 006981 242 KACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA-- 317 (623)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~-- 317 (623)
..+...|++++|...|+.+..... +-...+.-.++.++.+.|++++|...+++..+.-..-...-+...+.+.+..
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence 344556666666666666655421 1123344455666666666666666666665542211111122222222111
Q ss_pred -----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006981 318 -----------GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (623)
Q Consensus 318 -----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (623)
+...+|.. .+..++.-|-......+|...+..+.+. =...--.+..-|.+
T Consensus 93 ~~~~~~~~~D~~~~~~A~~---------------~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 93 IPGILRSDRDQTSTRKAIE---------------EFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYK 153 (203)
T ss_dssp HHHHH-TT---HHHHHHHH---------------HHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHC
T ss_pred CccchhcccChHHHHHHHH---------------HHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 11122222 3344444455555566666655555421 01111234566788
Q ss_pred CCChhhHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHH
Q 006981 387 GDQLPKTMEVLSDMKSLGLCPNT----ITYSILLVACERKDDVEVGL 429 (623)
Q Consensus 387 ~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~ 429 (623)
.|.+..|..-++.+++. -|+. .....++.++.+.|..+.+.
T Consensus 154 ~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 88888888888887775 3442 34566677777888776443
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.36 E-value=0.018 Score=41.83 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHH
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMV 154 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~ 154 (623)
+.+|..+...+...|++++|+..|++..+.. +.+...|..+..++.+.| ++++|++.+++..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3445555555555555555555555555443 233444555555555555 4555555555444
No 197
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.27 E-value=0.11 Score=50.38 Aligned_cols=264 Identities=15% Similarity=0.068 Sum_probs=137.1
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHH--HC--CC-CCCHHHHHHHHHHH
Q 006981 102 CASSKDSEGAFQVLRLVQEAGLKADC----KLYTTLITTCAKSGKVDAMFEVFHEMV--NA--GI-EPNVHTYGALIDGC 172 (623)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~--~~--g~-~~~~~~~~~li~~~ 172 (623)
+++.|+......+|+..++.| ..|. .+|..|.++|.-.+++++|++.+..=+ .+ |- .-...+...|-+.+
T Consensus 27 Lck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 678888888888888888877 3343 346667777777888888887654211 10 00 00111222333344
Q ss_pred HhcCCHHHHHHHHHH----HHhCCCC-CCHHHHHHHHHHHHccCC--------------------HHHHHHHHHHHhhCC
Q 006981 173 AKAGQVAKAFGAYGI----MRSKNVK-PDRVVFNALITACGQSGA--------------------VDRAFDVLAEMNAEV 227 (623)
Q Consensus 173 ~~~g~~~~A~~~~~~----m~~~g~~-p~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~~~ 227 (623)
--.|.+++|+-...+ ..+.|-. .....+..+...|...|+ ++.|.++|.+-.+-.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 445666655533221 1111100 012334445555544332 223333333211100
Q ss_pred --CC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh----cCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--
Q 006981 228 --HP-VDPDHITIGALMKACANAGQVDRAREVYKMIHK----YNI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-- 297 (623)
Q Consensus 228 --~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-- 297 (623)
.+ --..-..|..|...|.-.|+++.|+...+.-.. .|- ......+..+.+++.-.|+++.|.+.++.-..
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 00 001112344455555556777777776654322 111 11123566677777777888888777765432
Q ss_pred --CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 298 --KGV-IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-----GISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (623)
Q Consensus 298 --~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (623)
.|- .....+..+|...|.-..++.+|+.++.+-... ...-....+.+|..+|...|..++|+...+.-.
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 221 112344556666676667777777777653221 112235667777777777777777776665543
No 198
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.24 E-value=0.023 Score=41.29 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 006981 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMT 296 (623)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~ 296 (623)
+|..+...+...|++++|+..|++..+.+ +.+...|..+..+|.+.| ++++|++.+++..
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 44444444455555555555555554443 334444444555555554 3555555544443
No 199
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.22 E-value=0.67 Score=42.23 Aligned_cols=47 Identities=9% Similarity=0.068 Sum_probs=27.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHcCCChhhH
Q 006981 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVS----TMNALITALCDGDQLPKT 393 (623)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~A 393 (623)
+...|.+.|.+..|..-++.+.+. -|+.. ..-.++.+|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 455677777777777777777654 23322 334556666666666533
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.19 E-value=0.089 Score=49.81 Aligned_cols=96 Identities=19% Similarity=0.118 Sum_probs=40.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHH
Q 006981 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR----VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240 (623)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l 240 (623)
|...+..+.+.|++++|...|+.+.+. .|+. ..+..+...|...|++++|...|..+......-+.....+-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 333333334445555555555555543 2221 2333444455555555555555555543211111111222223
Q ss_pred HHHHHHcCChHHHHHHHHHHHh
Q 006981 241 MKACANAGQVDRAREVYKMIHK 262 (623)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~ 262 (623)
...+...|+.+.|..+|+.+.+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444445555554444443
No 201
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.29 Score=46.09 Aligned_cols=98 Identities=17% Similarity=0.086 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---ChhhHHHHHHHHHHCCCCC-CHHHH
Q 006981 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD---QLPKTMEVLSDMKSLGLCP-NTITY 412 (623)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p-~~~t~ 412 (623)
-|...|-.|...|...|+.+.|..-|.+..+.. .+|...+..+..++.... ...++..+|+++... .| |..+.
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral 230 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRAL 230 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHH
Confidence 345555555555555555555555555544432 234444444443332211 133455555555543 33 23333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 413 SILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 413 ~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
.-|...+...|++.+|...|+.|.+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 3344455555555555555555555
No 202
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.10 E-value=0.83 Score=39.64 Aligned_cols=127 Identities=17% Similarity=0.131 Sum_probs=71.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC-CCCCCHHHH
Q 006981 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDHITI 237 (623)
Q Consensus 159 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ 237 (623)
-|++.---.|..+..+.|+..+|...|++...--+.-|....-.+.++....++...|...++++.+-.. +-.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 4555555566666777777777777777666543444556666666666666777777777666554210 11233 33
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006981 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (623)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 289 (623)
-.+.+.+...|.+.+|+.-|+...+. -|+...--.....+.+.|+.+++.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 34556666667777677666666654 233333222333444555544443
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.04 E-value=0.16 Score=48.18 Aligned_cols=97 Identities=12% Similarity=0.072 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHH
Q 006981 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSKNV--KPDRVVFN 201 (623)
Q Consensus 128 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~ 201 (623)
..|...+....+.|++++|...|+.+.+. .|+. .++..+...|...|++++|...|+.+.+.-. +.....+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555554445567777777777777665 2332 3556666667777777777777777765410 11133344
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhC
Q 006981 202 ALITACGQSGAVDRAFDVLAEMNAE 226 (623)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~ 226 (623)
.+...+...|+.++|.++|+.+.+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455566677777777777776653
No 204
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.89 E-value=0.051 Score=46.58 Aligned_cols=57 Identities=16% Similarity=0.273 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (623)
Q Consensus 131 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (623)
..++..+...|++++|.++...+.... +-|...|..+|.+|...|+...|.++|+++
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444555555555555555555443 334455555555555555555555555544
No 205
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.83 E-value=0.064 Score=45.98 Aligned_cols=72 Identities=22% Similarity=0.312 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHHHH
Q 006981 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN-----AGIEPNVHTY 165 (623)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~ 165 (623)
.....++..+...|+++.|..+.+.+.... |.|...|..+|.+|...|+..+|.++|+.+.+ .|+.|+..+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 345667778889999999999999999886 77889999999999999999999999998753 5888877654
No 206
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.80 E-value=0.19 Score=41.47 Aligned_cols=49 Identities=14% Similarity=0.218 Sum_probs=23.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCCCHHHHHHHHH
Q 006981 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKY-NIKGTPEVYTIAIN 277 (623)
Q Consensus 229 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~ 277 (623)
++.|+..+..+++.+|+..|++..|.++.+...+. +++.+..+|..|+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34455555555555555555555555555444322 33333444444443
No 207
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.72 E-value=0.17 Score=49.22 Aligned_cols=266 Identities=18% Similarity=0.062 Sum_probs=151.7
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHH--h--CCCC-CCHHHHHHHHH
Q 006981 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVH----TYGALIDGCAKAGQVAKAFGAYGIMR--S--KNVK-PDRVVFNALIT 205 (623)
Q Consensus 135 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~--~--~g~~-p~~~~~~~li~ 205 (623)
.-+++.|+......+|+..++.|.+ |.. .|..|-++|.-.+++++|++....=+ . .|-+ -...+...|-.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3578999999999999999998843 443 46667777888888999987653211 0 0100 01111122333
Q ss_pred HHHccCCHHHHHHHHHHH----hhCCCCCCCCHHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHH
Q 006981 206 ACGQSGAVDRAFDVLAEM----NAEVHPVDPDHITIGALMKACANAGQ--------------------VDRAREVYKMIH 261 (623)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m----~~~~~~~~~~~~~~~~ll~~~~~~g~--------------------~~~A~~~~~~~~ 261 (623)
.+--.|.+++|.-.-.+- .+-+.. ......+..+...|...|+ ++.|.++|.+=.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDr-v~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDR-VLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHH-HhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 333344555554322111 000000 0112234445555544432 233444443211
Q ss_pred ----hcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 262 ----KYNI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTK----KGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (623)
Q Consensus 262 ----~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 331 (623)
+.|- -.....|..|.+.|.-.|+++.|+...+.-+. -|-. .....+..+..++.-.|+++.|.+.++...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 1110 00113566677777778889988877654322 2211 123456677778888899999988887643
Q ss_pred H----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 006981 332 N----QG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-----KLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (623)
Q Consensus 332 ~----~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (623)
. .| -.....+..+|.+.|.-..++++|+..+.+-... ...-...++-+|..+|...|..++|+.+.+.-+
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2 22 2334567778888888888888888887653320 011245567788888988999999888776654
Q ss_pred H
Q 006981 402 S 402 (623)
Q Consensus 402 ~ 402 (623)
+
T Consensus 343 ~ 343 (639)
T KOG1130|consen 343 R 343 (639)
T ss_pred H
Confidence 4
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.68 E-value=0.079 Score=38.89 Aligned_cols=55 Identities=18% Similarity=0.234 Sum_probs=27.4
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 006981 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (623)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (623)
.+.+.++++.|.++++.+.+.+ |.+...+.....++.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444555555555555555443 334444444555555555555555555555443
No 209
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.67 E-value=0.18 Score=41.54 Aligned_cols=57 Identities=12% Similarity=0.166 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcC
Q 006981 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (623)
Q Consensus 191 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g 248 (623)
....|+..+..+++.+|+..|++..|+++.+...+. .+++-+..+|..|+.-.....
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~-Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK-YPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHhc
Confidence 346788888888888888888888888888888775 567777888888876554433
No 210
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.64 E-value=0.095 Score=48.28 Aligned_cols=123 Identities=18% Similarity=0.218 Sum_probs=68.4
Q ss_pred HhhhCC--CCCHHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006981 83 FFKLVP--NPTLSTFNMLMSVCAS-----SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (623)
Q Consensus 83 ~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 155 (623)
.|..++ ..|-.+|-+.+..+.. .+.++--...++.|.+.|+..|..+|+.|++.+-+-.-
T Consensus 56 ~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf------------- 122 (406)
T KOG3941|consen 56 QFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF------------- 122 (406)
T ss_pred hhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc-------------
Confidence 344444 3455556555555443 24455555566666666666666666666665433211
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHh
Q 006981 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV-DRAFDVLAEMN 224 (623)
Q Consensus 156 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 224 (623)
.|.. .+....--|- .+-+-+++++++|...|+.||..+-..|+.++++.+-. .+..++.-.|.
T Consensus 123 ---iP~n-vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 123 ---IPQN-VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred ---ccHH-HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 1111 0111111111 22345788888888888888888888888888877652 34444444443
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.51 E-value=0.1 Score=38.28 Aligned_cols=56 Identities=7% Similarity=0.033 Sum_probs=30.9
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 135 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (623)
..|.+.+++++|.++++.+...+ +.+...|.....++.+.|++++|...|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34555556666666666655543 234445555555555566666666666555544
No 212
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.37 E-value=4.7 Score=42.94 Aligned_cols=107 Identities=13% Similarity=0.063 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006981 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (623)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (623)
.+--+.-+...|+..+|.++-.+.+ -||...|--=+.+++..+++++-+++-+..+ .+.-|.-.+..|.+
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLK 756 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHh
Confidence 3333444445566666655544332 3455555555666666666665554443332 13345555566666
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432 (623)
Q Consensus 387 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 432 (623)
.|+.++|.+++.+... .. -...+|.+.|++.+|.+.-
T Consensus 757 ~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred cccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHH
Confidence 6666666666654321 11 2344555556665555443
No 213
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.12 E-value=1.3 Score=36.18 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=6.1
Q ss_pred HHHHcCCChhhHHHHHHH
Q 006981 382 TALCDGDQLPKTMEVLSD 399 (623)
Q Consensus 382 ~~~~~~g~~~~A~~l~~~ 399 (623)
.+|.+.|...++-+++++
T Consensus 128 ~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 128 NAYKKLGNTREANELLKE 145 (161)
T ss_dssp HHHHHTT-HHHHHHHHHH
T ss_pred HHHHHhcchhhHHHHHHH
Confidence 333333333333333333
No 214
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=4 Score=40.30 Aligned_cols=258 Identities=12% Similarity=0.029 Sum_probs=129.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChH
Q 006981 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (623)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~ 109 (623)
+...+..++.+|+..+...++.. |.+..++..-+..+...+++++|.--.++-. +.......-.-+.+...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence 45567888999999998888876 4555544443444444455555544332211 111111111122222222222
Q ss_pred HHHHHHH------------HH---HHcC-CCCCHHHHHHHH-HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-
Q 006981 110 GAFQVLR------------LV---QEAG-LKADCKLYTTLI-TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG- 171 (623)
Q Consensus 110 ~A~~~~~------------~m---~~~g-~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~- 171 (623)
+|.+.++ .. .... -+|...++..|- .++.-.|+.++|.+.--...+.. ....+...+++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~ 211 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGL 211 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhccc
Confidence 2222221 11 1111 123334444332 34455677777777766666542 12223333333
Q ss_pred -HHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-------------HHHHHHHccCCHHHHHHHHHHHhhCC-CCCCCCHHH
Q 006981 172 -CAKAGQVAKAFGAYGIMRSKNVKPDRVVFN-------------ALITACGQSGAVDRAFDVLAEMNAEV-HPVDPDHIT 236 (623)
Q Consensus 172 -~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-------------~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~ 236 (623)
+--.++.+.|..-|++.+..+ |+-..-- .=..-..+.|.+..|.+.+.+.+... ....++...
T Consensus 212 ~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 234567777887777776553 3322211 11122446677778887777766431 112334444
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
|.....+..+.|+..+|+.--+...+.+- .-+..+..-..++.-.+.|++|.+-|++..+.
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~iD~-syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKIDS-SYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555666777777777777777766541 11112222233444456677777777666554
No 215
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.03 E-value=1.4 Score=37.90 Aligned_cols=122 Identities=11% Similarity=0.142 Sum_probs=77.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCC----CCHHHHHHHH---HHHHcCC
Q 006981 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLM---SVCASSK 106 (623)
Q Consensus 34 ~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li---~~~~~~~ 106 (623)
.|.+.+..++|+.-|..+.+.|.-............+..+.|+...|...|+++.. |-+.-=.+-+ -.+..+|
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc
Confidence 45589999999999999999987666665555566666777888888888887641 2111001111 1245566
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006981 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (623)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 155 (623)
.++......+-+-..+-+.-...-..|.-+..+.|++..|.+.|..+..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 6666666665555444333334444555556667777777777776654
No 216
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=3.3 Score=39.12 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=24.1
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (623)
Q Consensus 138 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (623)
...|++.+|..+|+...... +-+...--.+..+|...|+.+.|..++..+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 34455555555555544432 1223334444555555555555555555544
No 217
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.98 E-value=3.5 Score=44.38 Aligned_cols=115 Identities=13% Similarity=0.130 Sum_probs=72.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCC-CCHHHHHHHHHHHHcCCChHHH
Q 006981 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-PTLSTFNMLMSVCASSKDSEGA 111 (623)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A 111 (623)
+.|++...+.-|+.+-+.-.... .....++.-.+..+...|++++|...|-+... -++ ..+|.-+....+..+-
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~~~d~--d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLdaq~IknL 416 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQHLDE--DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDAQRIKNL 416 (933)
T ss_pred HHHHHhhhHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCHHHHHHH
Confidence 34556666666666554432211 22345566666677778999999988865431 111 1245556666666777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 006981 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153 (623)
Q Consensus 112 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 153 (623)
-..++.+.+.|+. +...-+.|+.+|.+.++.+.-.++.+..
T Consensus 417 t~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 417 TSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred HHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcC
Confidence 7778888888854 4444567889999998887766655443
No 218
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.94 E-value=0.95 Score=46.48 Aligned_cols=131 Identities=12% Similarity=0.132 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006981 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (623)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (623)
-.+.++..+-+.|-.+.|+++-..-. .-.....+.|+++.|.++-++. .+...|..|.....
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 35556666666666666665532211 1223344566666665543322 24556666666666
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006981 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (623)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 288 (623)
+.|+++-|.+.|.+.. -+..|+-.|.-.|+.+.-.++-+.....| -+|....++...|+.++.
T Consensus 359 ~~g~~~lAe~c~~k~~-----------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 359 RQGNIELAEECYQKAK-----------DFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEEC 421 (443)
T ss_dssp HTTBHHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HcCCHHHHHHHHHhhc-----------CccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHH
Confidence 6666666666665532 24445555666666666666665555554 244444555555666666
Q ss_pred HHHHHH
Q 006981 289 CSVYDD 294 (623)
Q Consensus 289 ~~l~~~ 294 (623)
.+++.+
T Consensus 422 v~lL~~ 427 (443)
T PF04053_consen 422 VDLLIE 427 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 219
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.92 E-value=2.3 Score=37.02 Aligned_cols=128 Identities=11% Similarity=0.033 Sum_probs=71.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHH
Q 006981 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK---LKPTVSTM 377 (623)
Q Consensus 301 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~ 377 (623)
.|++..-..+..+..+.|+..+|...|++...--+.-|....-.+.++....++...|...++.+-+.. -.|| +-
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 345555555666666666666666666666554444556666666666666666666666666655432 1222 23
Q ss_pred HHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432 (623)
Q Consensus 378 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 432 (623)
-.+...|...|++.+|..-|+..... .|+...-...-..+.++|+.+++..-+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 34455666667777777777666653 444443333333345556555544333
No 220
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.77 E-value=2.2 Score=36.03 Aligned_cols=83 Identities=12% Similarity=0.153 Sum_probs=38.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 006981 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (623)
Q Consensus 133 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 212 (623)
++..+...+.......+++.+...+ ..+...++.++..|++.+. .+.++.+.. ..+......+++.|.+.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 4444444555555555555555544 2344455555555554422 223333321 1122333345555555555
Q ss_pred HHHHHHHHHHH
Q 006981 213 VDRAFDVLAEM 223 (623)
Q Consensus 213 ~~~A~~~~~~m 223 (623)
++++..++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555443
No 221
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.72 E-value=0.29 Score=45.20 Aligned_cols=36 Identities=25% Similarity=0.235 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006981 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425 (623)
Q Consensus 390 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 425 (623)
-+-+++++++|...|+.||..+-..|+.++.+.+-.
T Consensus 139 Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 139 QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 345788888898889999988888888888877653
No 222
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.69 E-value=5.3 Score=40.03 Aligned_cols=420 Identities=13% Similarity=0.137 Sum_probs=210.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC----chHHHHHHHHHHhhhHHHHHHHH---HhhhCCCCCHHHHHHHHHH--HHcCCC
Q 006981 37 RQGRISECIDLLEDMERKGLLDM----DKVYHARFFNVCKSQKAIKEAFR---FFKLVPNPTLSTFNMLMSV--CASSKD 107 (623)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~---~~~~~~~~~~~~~~~li~~--~~~~~~ 107 (623)
+++++.+|..+|.++.+.-..++ ...+.+.++.++-. ++++.-.. .+++-.+. ..|-.+..+ +-+.++
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~--s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGK--SAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHhhh
Confidence 88999999999999876542111 12333444444432 22332222 23332222 234444443 456788
Q ss_pred hHHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 006981 108 SEGAFQVLRLVQEA--GLKA------------DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEPNVHTYGALI 169 (623)
Q Consensus 108 ~~~A~~~~~~m~~~--g~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~~~~~~~li 169 (623)
+++|++.+..-..+ +-.| |-+.-+..++.+...|++.+++.+++++... ....+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 99999988776654 2222 2233456778888999999999998888754 3347889999877
Q ss_pred HHHHhcC--------C-------HHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHhhC
Q 006981 170 DGCAKAG--------Q-------VAKAFGAYGIMRSK------NVKPDRVVFNALITACGQS--GAVDRAFDVLAEMNAE 226 (623)
Q Consensus 170 ~~~~~~g--------~-------~~~A~~~~~~m~~~------g~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~ 226 (623)
-++++.= . ++.+.-...+|... .+.|.......++....-. ....--++++..-..
T Consensus 175 lmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~- 253 (549)
T PF07079_consen 175 LMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWEN- 253 (549)
T ss_pred HHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHh-
Confidence 7666531 1 22233333333321 2334333333343332221 122223333333222
Q ss_pred CCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006981 227 VHPVDPDH-ITIGALMKACANAGQVDRAREVYKMIHKYNIK----GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (623)
Q Consensus 227 ~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 301 (623)
.-+.|+. .+...|..-+.+ +.+++..+-+.+....+. .-..++..+++...+.++...|.+.+.-+.-....
T Consensus 254 -~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~ 330 (549)
T PF07079_consen 254 -FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR 330 (549)
T ss_pred -hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 2344542 233334443333 445555444443322111 11356778888888888888877777655443211
Q ss_pred --------CCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHhcCC-HHHHHHHHHHHHhC
Q 006981 302 --------PDEVFLSALIDF-AGHAGKVEAAFEILQEAKNQGISVGIISYSSLM---GACSNAKN-WQKALELYEHMKSI 368 (623)
Q Consensus 302 --------p~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~-~~~A~~~~~~m~~~ 368 (623)
....++..++.. =...-+...=+.+|.......+.- ......|+ .-+.+.|. -++|.++++.+.+.
T Consensus 331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f 409 (549)
T PF07079_consen 331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF 409 (549)
T ss_pred chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 111222222210 001112223334444443332211 11112222 22344554 77788888877764
Q ss_pred CCCCCHHHHHHHH----HHHHc---CCChhhHHHHHHHHHHCCCCCC----HHHHHHHHHH--HHhcCCHHHHHHHHHHH
Q 006981 369 KLKPTVSTMNALI----TALCD---GDQLPKTMEVLSDMKSLGLCPN----TITYSILLVA--CERKDDVEVGLMLLSQA 435 (623)
Q Consensus 369 ~~~~~~~~~~~li----~~~~~---~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a--~~~~g~~~~a~~~~~~~ 435 (623)
. .-|..+-|.+. ..|.+ ...+.+-+.+-+-..+.|+.|- ...-+.|.+| +...|++.++.-.-.-+
T Consensus 410 t-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL 488 (549)
T PF07079_consen 410 T-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWL 488 (549)
T ss_pred c-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 2 22443333222 23332 2334445555555566777763 3333444433 45678888876555555
Q ss_pred HHCCCCCCHHHHHHHHHHHH---hcHHHHHHhhHhh
Q 006981 436 KEDGVIPNLVMFKCIIGMCS---RRYEKARTLNEHV 468 (623)
Q Consensus 436 ~~~g~~p~~~~~~~li~~~~---~~~~~a~~~~~~~ 468 (623)
.+ +.|++.+|.-+ ++|. ++|.+|.......
T Consensus 489 ~~--iaPS~~~~RLl-Gl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 489 TK--IAPSPQAYRLL-GLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HH--hCCcHHHHHHH-HHHHHHHhhHHHHHHHHHhC
Confidence 55 67877777644 3332 3677777766554
No 223
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=1.8 Score=40.78 Aligned_cols=143 Identities=10% Similarity=0.083 Sum_probs=85.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCC-HHHHH---HHHHHHHcCCCh
Q 006981 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT-LSTFN---MLMSVCASSKDS 108 (623)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~---~li~~~~~~~~~ 108 (623)
..++..|++.+|..+|+...... +.+......+...+...|+.+.|..++..+|... ...|. .-|..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34567888888888888888766 4555566667777777888888888888877321 11121 223334444444
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHH
Q 006981 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVA 179 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~ 179 (623)
.+...+-++.-.. +-|...-..+...+...|+.++|.+.+-.+.++. -..|...-..|+..+.-.|.-+
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 4444444443331 3356666667777777777777776665555431 1234455566666666555433
No 224
>PRK15331 chaperone protein SicA; Provisional
Probab=94.68 E-value=0.26 Score=42.11 Aligned_cols=80 Identities=16% Similarity=0.056 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 006981 75 KAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151 (623)
Q Consensus 75 ~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 151 (623)
|++++|..+|.... +-|..-|..|...+-..+++++|+..|......+ .-|+..+-....++...|+.+.|+..|.
T Consensus 51 Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~~f~ 129 (165)
T PRK15331 51 GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQCFE 129 (165)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHHHHH
Confidence 45555555554321 2333334444444444555555555555444333 2233333334555555556666665555
Q ss_pred HHHH
Q 006981 152 EMVN 155 (623)
Q Consensus 152 ~m~~ 155 (623)
....
T Consensus 130 ~a~~ 133 (165)
T PRK15331 130 LVNE 133 (165)
T ss_pred HHHh
Confidence 5554
No 225
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.64 E-value=5.2 Score=39.74 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=15.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 272 YTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
+.+++.+..-.|+.++|.+..++|.+.
T Consensus 308 ~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 308 VATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 345555555555666665555555544
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.57 E-value=0.12 Score=38.51 Aligned_cols=62 Identities=18% Similarity=0.158 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 375 STMNALITALCDGDQLPKTMEVLSDMKSL--GLC---PN-TITYSILLVACERKDDVEVGLMLLSQAK 436 (623)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~---p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (623)
.+|+.+...|...|++++|++.|++..+. ... |+ ..++..+...+...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555556666666666666666655421 011 11 3345555566666666666666666554
No 227
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.51 E-value=1.3 Score=45.45 Aligned_cols=165 Identities=12% Similarity=0.153 Sum_probs=62.7
Q ss_pred hhhhHHHHHHHHhcCCHHHHHHHHH-HHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 006981 25 VSEQLHSYNRLIRQGRISECIDLLE-DMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCA 103 (623)
Q Consensus 25 ~~~~~~~~~~l~~~g~~~~A~~l~~-~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~ 103 (623)
+++...-|...+-+|+++++.++.+ .-.-.. +| ......+++...+.|..+.|+.+-. |. ..-.....
T Consensus 261 ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~-i~--~~~~~~i~~fL~~~G~~e~AL~~~~-----D~---~~rFeLAl 329 (443)
T PF04053_consen 261 LDLSELEFKTAVLRGDFEEVLRMIAASNLLPN-IP--KDQGQSIARFLEKKGYPELALQFVT-----DP---DHRFELAL 329 (443)
T ss_dssp --HHHHHHHHHHHTT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHH
T ss_pred ECHHHHHHHHHHHcCChhhhhhhhhhhhhccc-CC--hhHHHHHHHHHHHCCCHHHHHhhcC-----Ch---HHHhHHHH
Confidence 4445555666666666666555543 110001 01 2223333444444444444444321 11 11122333
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006981 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (623)
Q Consensus 104 ~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (623)
+.|+++.|.++.+. ..+...|..|.+...+.|+++-|.+.|.+..+ |..|+-.|.-.|+.+.-.+
T Consensus 330 ~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 330 QLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred hcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 44444444444321 12344455555555555555555554444331 3344444444455444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006981 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221 (623)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 221 (623)
+-+.....| -++....++.-.|+.++..+++.
T Consensus 395 l~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 395 LAKIAEERG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 444444332 13333333444444444444443
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.48 E-value=0.76 Score=46.19 Aligned_cols=38 Identities=11% Similarity=0.174 Sum_probs=27.5
Q ss_pred CCCccCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006981 18 HANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKG 55 (623)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~ 55 (623)
....|++.......-..|.+.|++++|+..|++.++.+
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~ 105 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN 105 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34556666666666667778888888888888877766
No 229
>PRK15331 chaperone protein SicA; Provisional
Probab=94.45 E-value=2.9 Score=35.94 Aligned_cols=89 Identities=9% Similarity=-0.054 Sum_probs=61.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006981 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356 (623)
Q Consensus 277 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 356 (623)
--+.+.|++++|..+|.-+...+.. |..-|..|..++-..+++++|...|......+. -|+..+-....+|...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 3345678888888888877765543 455566666666677888888888877655442 34444555667777888888
Q ss_pred HHHHHHHHHHh
Q 006981 357 KALELYEHMKS 367 (623)
Q Consensus 357 ~A~~~~~~m~~ 367 (623)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 88888877775
No 230
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.45 E-value=0.12 Score=38.49 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 006981 340 ISYSSLMGACSNAKNWQKALELYEHMKSI----KL-KPT-VSTMNALITALCDGDQLPKTMEVLSDMK 401 (623)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (623)
.+++.+...|...|++++|+..|++..+. |. .|+ ..+++.+...|...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555666666666666666554421 10 111 3455666666677777777777766654
No 231
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.44 E-value=2.5 Score=35.65 Aligned_cols=124 Identities=15% Similarity=0.179 Sum_probs=62.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006981 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (623)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (623)
.++..+...+.......+++.+...+ ..+....+.++..|++.+. .+..+.+.. . ++......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence 45555555666666666666666655 3555666666666665432 233333331 1 12233444566666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006981 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNA-KNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (623)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (623)
.++++..++..+.. +...+..+... ++.+.|.+.+.+- .+...|..++..+.
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 66666666654421 11122222222 5566666655541 24455655555443
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.21 E-value=1.5 Score=44.25 Aligned_cols=65 Identities=11% Similarity=-0.030 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 006981 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC----KLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (623)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (623)
.+...|+.+..+|.+.|++++|+..|++..+.. |+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455667777777777777777777777766653 332 34666777777777777777777776653
No 233
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.97 E-value=2.9 Score=34.18 Aligned_cols=138 Identities=14% Similarity=0.128 Sum_probs=82.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006981 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360 (623)
Q Consensus 281 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 360 (623)
-.|..++..++..+..... +..-++.+|--....-+-+-..++++.+-+ -.|. ..+|++.....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDi----------s~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDI----------SKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-G----------GG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------hhhcchHHHHH
Confidence 3566777777777766542 445555555444444444444444443322 2222 24555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006981 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440 (623)
Q Consensus 361 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~ 440 (623)
.+-.+- .+....+..+..+...|+-+.-.++..++.+. -.|++.....+..||.+.|+..++.+++.++-+.|+
T Consensus 78 C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 78 CYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 544432 45566777788899999999999999998754 378888999999999999999999999999998885
No 234
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.94 E-value=6.9 Score=38.41 Aligned_cols=286 Identities=15% Similarity=0.105 Sum_probs=178.2
Q ss_pred hHHHHHHHHHhhhC---CCCCHHHHHHHHHH--HHcCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCChhHH
Q 006981 74 QKAIKEAFRFFKLV---PNPTLSTFNMLMSV--CASSKDSEGAFQVLRLVQEAGLKADCK--LYTTLITTCAKSGKVDAM 146 (623)
Q Consensus 74 ~~~~~~A~~~~~~~---~~~~~~~~~~li~~--~~~~~~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A 146 (623)
.|+-..|.+.-.+. ...|..-.-.++.+ -.-.|+++.|.+-|+.|... |... -...|.-..-+.|..+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 35566666665443 23444444445433 34469999999999999752 2222 233444444577888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHH--HHHHHHHHHHc---cCCHHHHHHHH
Q 006981 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-VKPDRV--VFNALITACGQ---SGAVDRAFDVL 220 (623)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--~~~~li~~~~~---~g~~~~A~~~~ 220 (623)
.+.-+..-..- +.-...+.+.+...|..|+|+.|+++.+.-+... +.++.. .-..|+.+-.. ..+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 88877776542 2235678889999999999999999998776542 344432 22334433222 23455666655
Q ss_pred HHHhhCCCCCCCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-C
Q 006981 221 AEMNAEVHPVDPDHITI-GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-K 298 (623)
Q Consensus 221 ~~m~~~~~~~~~~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~ 298 (623)
.+..+ +.||.+.- ..-..++.+.|+..++-.+++.+-+....|+ ++.. -.+.+.|+ .+..-++...+ .
T Consensus 253 ~~a~K----L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~l--Y~~ar~gd--ta~dRlkRa~~L~ 322 (531)
T COG3898 253 LEANK----LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALL--YVRARSGD--TALDRLKRAKKLE 322 (531)
T ss_pred HHHhh----cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHH--HHHhcCCC--cHHHHHHHHHHHH
Confidence 55443 35554332 2344778999999999999999988754443 3322 22344444 33333333222 1
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHH
Q 006981 299 GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS-NAKNWQKALELYEHMKSIKLKPTVST 376 (623)
Q Consensus 299 ~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~~ 376 (623)
..+| +..+...+..+....|++..|..--+...+. .|....|..|.+.-. ..|+-.++...+.+..+. |....
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A---PrdPa 397 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA---PRDPA 397 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC---CCCCc
Confidence 1233 4566677778888889998888776666554 577778877777654 459999999999888874 33334
Q ss_pred HH
Q 006981 377 MN 378 (623)
Q Consensus 377 ~~ 378 (623)
|+
T Consensus 398 W~ 399 (531)
T COG3898 398 WT 399 (531)
T ss_pred cc
Confidence 54
No 235
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.89 E-value=7 Score=38.35 Aligned_cols=222 Identities=16% Similarity=0.081 Sum_probs=123.2
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCCHH--HHHHHHHHHH---hc
Q 006981 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGTPE--VYTIAINCCS---QT 282 (623)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~--~~~~li~~~~---~~ 282 (623)
+.|+.+.|.+.-++.-... +.-...+.+++...+..|+++.|+++.+.-....+ .++.. .-..|+.+-. -.
T Consensus 166 r~GareaAr~yAe~Aa~~A---p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 166 RLGAREAARHYAERAAEKA---PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred hcccHHHHHHHHHHHHhhc---cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 4455555555555443321 11123445555555666666666665554433221 11111 1111111111 11
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006981 283 GDWEFACSVYDDMTKKGVIPDEVF-LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361 (623)
Q Consensus 283 g~~~~A~~l~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 361 (623)
.+...|...-.+..+. .||.+- -.....++.+.|+..++-.+++.+-+....|+. + ++..+.+.|+.- ..-
T Consensus 243 adp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdta--~dR 314 (531)
T COG3898 243 ADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDTA--LDR 314 (531)
T ss_pred CChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCcH--HHH
Confidence 2344455444443332 334322 223345678889999999999998887655543 2 222345666532 222
Q ss_pred HHH---HHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Q 006981 362 YEH---MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER-KDDVEVGLMLLSQAKE 437 (623)
Q Consensus 362 ~~~---m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~ 437 (623)
+++ +.+.. +-+..+-..+..+-...|++..|..--+.... ..|....|..|.+.-.- .|+-.++.+.+.+.++
T Consensus 315 lkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 315 LKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 222 22211 23566777778888888999888877776665 47888888888776544 4999999999999988
Q ss_pred CCCCCCH
Q 006981 438 DGVIPNL 444 (623)
Q Consensus 438 ~g~~p~~ 444 (623)
..-+|+-
T Consensus 392 APrdPaW 398 (531)
T COG3898 392 APRDPAW 398 (531)
T ss_pred CCCCCcc
Confidence 7656654
No 236
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.85 E-value=7.6 Score=38.61 Aligned_cols=175 Identities=15% Similarity=0.097 Sum_probs=89.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006981 132 TLITTCAKSGKVDAMFEVFHEMVNAG---IEPNVHTYGALIDGCAK---AGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (623)
Q Consensus 132 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 205 (623)
.++-.|....+++..+++.+.+.... +..+...-....-++-+ .|+.++|++++..+....-.++..+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44445777777788888887777531 11122222233344555 6778888888877555545667777766665
Q ss_pred HHHcc---------CCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 006981 206 ACGQS---------GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276 (623)
Q Consensus 206 ~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 276 (623)
.|-.. ...++|...|.+.-. +.||..+--.++..+...|.......-.+++. ..++.+
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe----~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~--------~~l~~l- 292 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE----IEPDYYSGINAATLLMLAGHDFETSEELRKIG--------VKLSSL- 292 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc----CCccccchHHHHHHHHHcCCcccchHHHHHHH--------HHHHHH-
Confidence 54321 123444444443322 23332222222222222222111110000000 011111
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006981 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (623)
Q Consensus 277 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (623)
..+.|. .+-..|-..+.+++.++.-.|+.++|.+..++|.+..
T Consensus 293 --lg~kg~-------------~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 293 --LGRKGS-------------LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred --HHhhcc-------------ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 111110 1123466778899999999999999999999998774
No 237
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.59 E-value=6.6 Score=41.00 Aligned_cols=93 Identities=12% Similarity=0.090 Sum_probs=51.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHH
Q 006981 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV------HTYGALIDGCAK----AGQVAKAFGAYGIMRSKNVKPDRVV 199 (623)
Q Consensus 130 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~ 199 (623)
...+++..+-.|+-+.+++.+.+..+.+--... ..|...+..++- ....+.|.++++.+.+. .|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 445666677778888888888776553211111 123333333332 34456666677666655 455555
Q ss_pred HHHHH-HHHHccCCHHHHHHHHHHHh
Q 006981 200 FNALI-TACGQSGAVDRAFDVLAEMN 224 (623)
Q Consensus 200 ~~~li-~~~~~~g~~~~A~~~~~~m~ 224 (623)
|...- +.+...|++++|.+.|++..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~ 294 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAI 294 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 54332 44455566777777766543
No 238
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.45 E-value=4.5 Score=42.24 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=42.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHH
Q 006981 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPE------VYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVF 306 (623)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~ 306 (623)
+..+++...-.|+-+.+++.+....+.+-.-.+. .|..++..++. ....+.|.+++..+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 4445556666677777777666654432111111 23333333322 23445555555555544 234333
Q ss_pred HHHHH-HHHHhcCCHHHHHHHHHHH
Q 006981 307 LSALI-DFAGHAGKVEAAFEILQEA 330 (623)
Q Consensus 307 ~~~li-~~~~~~g~~~~a~~~~~~~ 330 (623)
|...- ..+...|++++|.+.|+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a 293 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERA 293 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 32222 2233345555555555543
No 239
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.05 E-value=1.7 Score=42.82 Aligned_cols=78 Identities=9% Similarity=-0.053 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (623)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (623)
.+++.+..+|.+.+.+.+|++.-++.++.+ ++|....-.=-.+|...|+++.|+..|+++++ +.|+...-+.=|..|
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 456777888999999999999999988764 56777777778899999999999999999998 677766555544444
Q ss_pred H
Q 006981 455 S 455 (623)
Q Consensus 455 ~ 455 (623)
.
T Consensus 335 ~ 335 (397)
T KOG0543|consen 335 K 335 (397)
T ss_pred H
Confidence 3
No 240
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.91 E-value=2.9 Score=35.04 Aligned_cols=77 Identities=10% Similarity=0.071 Sum_probs=47.5
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006981 99 MSVCASSKDSEGAFQVLRLVQEAGL--KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (623)
Q Consensus 99 i~~~~~~~~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (623)
.....+.|++++|.+.|+.+..+-. +-.......|+.+|.+.+++++|...+++.++.....-..-|-..+.+++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 3444567788888888887776521 1234456667778888888888888888877753221223455555554443
No 241
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.89 E-value=2 Score=42.22 Aligned_cols=61 Identities=13% Similarity=0.019 Sum_probs=26.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 006981 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (623)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 263 (623)
++.+.-++.+.+++.+|++.-+..+... ++|....---..+|...|+++.|+..|+++.+.
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~---~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELD---PNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcC---CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3334444444444444444444444321 233333333334444444444444444444443
No 242
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.66 E-value=2 Score=40.04 Aligned_cols=59 Identities=15% Similarity=0.200 Sum_probs=25.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 240 LMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
|..++...|++++|..+|..+.+.-. +--+..+-.|.....+.|+.++|...|+++.+.
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 44444445555555554444443211 111234444444444444555555554444443
No 243
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.65 E-value=10 Score=36.54 Aligned_cols=62 Identities=10% Similarity=0.060 Sum_probs=31.1
Q ss_pred HHHHHHHHHHccCCH---HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 006981 199 VFNALITACGQSGAV---DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (623)
Q Consensus 199 ~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 263 (623)
++..++.+|...+.. ++|..+++.+..+ .+-+ ..++..-+..+.+.++.+.+.+++.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 445555666655543 3444555555432 1222 223333444555566666666666666554
No 244
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.61 E-value=3.1 Score=34.85 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=22.7
Q ss_pred hcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 316 HAGKVEAAFEILQEAKNQG--ISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (623)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (623)
+.|++++|.+.|+.+...- -+-.....-.|+.+|.+.+++++|...+++.++
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444444444444444331 011223334444445555555555555554444
No 245
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.56 E-value=13 Score=37.48 Aligned_cols=400 Identities=11% Similarity=0.096 Sum_probs=223.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhh----CC---C-----------CCHHHHHHHHH
Q 006981 39 GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL----VP---N-----------PTLSTFNMLMS 100 (623)
Q Consensus 39 g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~---~-----------~~~~~~~~li~ 100 (623)
.+++.-...+....+.. +....+....+-.+-+.+.+++|...+.. .. + +|...=+..+.
T Consensus 59 ~nld~Me~~l~~l~~~~--~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~ 136 (549)
T PF07079_consen 59 NNLDLMEKQLMELRQQF--GKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAH 136 (549)
T ss_pred hhHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHH
Confidence 34444444445555443 33333333333345556778888777642 11 1 22333355667
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHcC--------ChhHHHHHH-------HHHHHC-----
Q 006981 101 VCASSKDSEGAFQVLRLVQEAGLK----ADCKLYTTLITTCAKSG--------KVDAMFEVF-------HEMVNA----- 156 (623)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~~~g~~----~~~~~~~~li~~~~~~g--------~~~~A~~~~-------~~m~~~----- 156 (623)
.+...|++.++..+++++...=++ -+..+|+.++-++++.= ..+-....| ++|...
T Consensus 137 sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y 216 (549)
T PF07079_consen 137 SLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPY 216 (549)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchH
Confidence 788899999999999988765444 68889998777666541 112122222 222211
Q ss_pred -CCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhCC-CCC-
Q 006981 157 -GIEPNVHTYGALIDGCAKA--GQVAKAFGAYGIMRSKNVKPDRV-VFNALITACGQSGAVDRAFDVLAEMNAEV-HPV- 230 (623)
Q Consensus 157 -g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~- 230 (623)
.+.|-......++....-. .+..--.++++.....-+.|+-. ....|+..+.. +.+++..+-+.+.... ..+
T Consensus 217 ~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lk 294 (549)
T PF07079_consen 217 EKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLK 294 (549)
T ss_pred HhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHH
Confidence 2234444444444333221 22233344444444444556543 23344444444 4444444443332210 000
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCC
Q 006981 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP-----EVYTIAINCCS----QTGDWEFACSVYDDMTKKGVI 301 (623)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~li~~~~----~~g~~~~A~~l~~~m~~~~~~ 301 (623)
+.=..++..++....+.++...|.+.+..+.-.+...+. .+-..+-+..+ ...+...-+.++......++.
T Consensus 295 e~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD 374 (549)
T PF07079_consen 295 EELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID 374 (549)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc
Confidence 112457888899999999999998888877654321110 11123333333 222344556666666666542
Q ss_pred CCHHHHHHHHH---HHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHhCCC
Q 006981 302 PDEVFLSALID---FAGHAGK-VEAAFEILQEAKNQGISVGIISYSSLM----GACSN---AKNWQKALELYEHMKSIKL 370 (623)
Q Consensus 302 p~~~~~~~li~---~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~~~ 370 (623)
.......++. -+-+.|. -++|+.+++.+.+.. +-|..+-|.+. ..|.+ ...+..-..+-+-+.+.|+
T Consensus 375 -rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl 452 (549)
T PF07079_consen 375 -RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGL 452 (549)
T ss_pred -HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 1122222332 2333444 788999998887753 33444433332 33432 3445666666666777887
Q ss_pred CCCHH----HHHHHHHH--HHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006981 371 KPTVS----TMNALITA--LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444 (623)
Q Consensus 371 ~~~~~----~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~ 444 (623)
.|-.+ .-|.|.++ +..+|++.++.-.-.-+.+ +.|+..+|..+.-+.....++++|..++.. +.|+.
T Consensus 453 ~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~ 525 (549)
T PF07079_consen 453 TPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNE 525 (549)
T ss_pred CcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCch
Confidence 66433 34444443 5578999998877666665 789999999988888899999999999965 56787
Q ss_pred HHHHHHH
Q 006981 445 VMFKCII 451 (623)
Q Consensus 445 ~~~~~li 451 (623)
.++++=+
T Consensus 526 ~~~dskv 532 (549)
T PF07079_consen 526 RMRDSKV 532 (549)
T ss_pred hhHHHHH
Confidence 7777754
No 246
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.56 E-value=4.9 Score=32.82 Aligned_cols=90 Identities=9% Similarity=0.048 Sum_probs=46.8
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCH
Q 006981 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH---TYGALIDGCAKAGQV 178 (623)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~ 178 (623)
.+..|+.+.|++.|.+....- +.....||.-..++.-.|+.++|++-+++..+..-..+.. +|..-...|-..|+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 455566666666666555432 3445566666666666666666666555555432111211 122222344555666
Q ss_pred HHHHHHHHHHHhCC
Q 006981 179 AKAFGAYGIMRSKN 192 (623)
Q Consensus 179 ~~A~~~~~~m~~~g 192 (623)
+.|..-|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666666555544
No 247
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.49 E-value=1.6 Score=41.33 Aligned_cols=77 Identities=17% Similarity=0.258 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 006981 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-----KNVKPDRVVFNAL 203 (623)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~l 203 (623)
++..++..+..+|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|++.|+++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45566677777777777777777777664 44667777788888888887777777777654 4677776666555
Q ss_pred HHH
Q 006981 204 ITA 206 (623)
Q Consensus 204 i~~ 206 (623)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 544
No 248
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.41 E-value=18 Score=38.83 Aligned_cols=301 Identities=13% Similarity=0.092 Sum_probs=169.9
Q ss_pred HcCCCCCHHHHH-----HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCC
Q 006981 120 EAGLKADCKLYT-----TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ--VAKAFGAYGIMRSKN 192 (623)
Q Consensus 120 ~~g~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g 192 (623)
..|++.+..-|. .+|+-+...+.+..|+++-..+...-.. +...|.....-+.+..+ -+++++..++=.+..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 456776665554 4577777888899999887776522111 14566666666666532 233333333322222
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------
Q 006981 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD--PDHITIGALMKACANAGQVDRAREVYKMIHKYN------ 264 (623)
Q Consensus 193 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------ 264 (623)
. .+..+|..+.+-....|+.+-|..+++.=...+..++ .+..-+...+.-+...|+.+....++-++...-
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~ 582 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLF 582 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 2 3456788888777888999999988865332211110 112234455666777888887777776654431
Q ss_pred -----CCCCHHHHHHHHH---------HHHhcCCHHHHHHH-HHHHH----hCCCCCCHHHHHHHHHHHHhcCCHHHH--
Q 006981 265 -----IKGTPEVYTIAIN---------CCSQTGDWEFACSV-YDDMT----KKGVIPDEVFLSALIDFAGHAGKVEAA-- 323 (623)
Q Consensus 265 -----~~~~~~~~~~li~---------~~~~~g~~~~A~~l-~~~m~----~~~~~p~~~~~~~li~~~~~~g~~~~a-- 323 (623)
.+.....|.-++. .|.+..+...+-.+ ++... ..+..|+ ......++.+.....-.
T Consensus 583 ~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~k 659 (829)
T KOG2280|consen 583 MTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAK 659 (829)
T ss_pred HHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHH
Confidence 1111222222222 12222222221111 11100 0122233 23333444444331111
Q ss_pred --------HHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHH
Q 006981 324 --------FEILQEAKN-QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (623)
Q Consensus 324 --------~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 394 (623)
..+.+.+.. .|......+.+--+.-+...|+..+|.++-.+.+ -||-..|---+.+++..+++++-+
T Consensus 660 a~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLe 735 (829)
T KOG2280|consen 660 ALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELE 735 (829)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHH
Confidence 122222222 1323334455556666778899999999888776 588888888899999999998877
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (623)
Q Consensus 395 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 435 (623)
++-+.+. .+.-|.-...+|.+.|+.++|.+++.+.
T Consensus 736 kfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 736 KFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred HHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 7655543 2456778888999999999999988654
No 249
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.05 E-value=0.64 Score=29.99 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=16.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHH
Q 006981 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273 (623)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 273 (623)
+..+...|.+.|++++|+++|+++.+.. +.+...|.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~ 39 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWR 39 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHH
Confidence 3344444555555555555555554443 33333333
No 250
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.04 E-value=4.7 Score=39.01 Aligned_cols=47 Identities=17% Similarity=0.264 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHhC
Q 006981 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAK--A----GQVAKAFGAYGIMRSK 191 (623)
Q Consensus 145 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~--~----g~~~~A~~~~~~m~~~ 191 (623)
+...+++.|.+.|+..+..+|-+....... . ....+|..+|+.|++.
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 344566666666666555555443222222 1 1234556666666554
No 251
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.01 E-value=4.1 Score=38.98 Aligned_cols=116 Identities=9% Similarity=-0.032 Sum_probs=69.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHH----HHHHHHHHcCC
Q 006981 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG----ALMKACANAGQ 249 (623)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~----~ll~~~~~~g~ 249 (623)
-.|...+|-..++++.+. .+.|...+...=++|...|+.+.-...++++... ..+|...|. .+.-++..+|-
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~---wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK---WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc---cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 356666666667777654 4556667776667777777777777777666532 234432222 22334455677
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (623)
Q Consensus 250 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 294 (623)
+++|++.-++..+.+ +.|.-+-.+....+-..|++.++.+...+
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 777777766666655 44445555566666666666666665443
No 252
>PRK11906 transcriptional regulator; Provisional
Probab=92.01 E-value=9.2 Score=38.82 Aligned_cols=142 Identities=13% Similarity=0.129 Sum_probs=93.1
Q ss_pred HHHHHHHHHhhhCC---CCC---HHHHHHHHHHHH---------cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 006981 75 KAIKEAFRFFKLVP---NPT---LSTFNMLMSVCA---------SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139 (623)
Q Consensus 75 ~~~~~A~~~~~~~~---~~~---~~~~~~li~~~~---------~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 139 (623)
...+.|+.+|.+.. +-| ...|..+.-.+. ......+|.++.++..+.+ +-|......+..+..-
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh
Confidence 45678888888765 333 333333322211 1234567778888888877 6788888888888888
Q ss_pred cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHccCCHHH
Q 006981 140 SGKVDAMFEVFHEMVNAGIEPN-VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR---VVFNALITACGQSGAVDR 215 (623)
Q Consensus 140 ~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~ 215 (623)
.++++.|..+|++....+ || ..+|........-+|+.++|.+.+++..+. .|.. ......+..|+..+ ++.
T Consensus 351 ~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~ 425 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKN 425 (458)
T ss_pred hcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhh
Confidence 888999999999988763 44 445555555566789999999999986654 3332 22333344565554 677
Q ss_pred HHHHHHH
Q 006981 216 AFDVLAE 222 (623)
Q Consensus 216 A~~~~~~ 222 (623)
|.+++-+
T Consensus 426 ~~~~~~~ 432 (458)
T PRK11906 426 NIKLYYK 432 (458)
T ss_pred hHHHHhh
Confidence 7777654
No 253
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.90 E-value=2.7 Score=39.21 Aligned_cols=99 Identities=18% Similarity=0.115 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHH
Q 006981 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVK--PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241 (623)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll 241 (623)
.|+.-+..| +.|++..|...|...++.... -....+-.|..++...|++++|..+|..+.+.....+.-...+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 355444432 445566666666555544210 01122333555566666666666666555543211111123444455
Q ss_pred HHHHHcCChHHHHHHHHHHHhc
Q 006981 242 KACANAGQVDRAREVYKMIHKY 263 (623)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~~~~~ 263 (623)
.+..+.|+.++|..+|+.+.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5555666666666666665554
No 254
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.83 E-value=10 Score=34.79 Aligned_cols=206 Identities=16% Similarity=0.167 Sum_probs=96.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006981 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (623)
Q Consensus 94 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (623)
.|.....+|....++++|...+.+..+. ...+...|. . ...++.|..+.+++.+. +--+..|+--..+|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-A------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-A------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-H------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444455566667777777766655431 111211111 1 12235555555555543 122344566667777
Q ss_pred hcCCHHHHHHHHHHHHh--CCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCC
Q 006981 174 KAGQVAKAFGAYGIMRS--KNVKPDRV--VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249 (623)
Q Consensus 174 ~~g~~~~A~~~~~~m~~--~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~ 249 (623)
.+|.++.|-..+++.-+ .++.|+.. .|..-+...-..++...|.++ +..+-..+.+...
T Consensus 103 E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el-----------------~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL-----------------YGKCSRVLVRLEK 165 (308)
T ss_pred HhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH-----------------HHHhhhHhhhhHH
Confidence 78877777666665432 12333321 122222222222222222222 2333344555556
Q ss_pred hHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHH
Q 006981 250 VDRAREVYKMIHKY----NIKGT-PEVYTIAINCCSQTGDWEFACSVYDDMTKKG---VIPDEVFLSALIDFAGHAGKVE 321 (623)
Q Consensus 250 ~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~ 321 (623)
+++|-..|.+-... .--++ -..|-+.|-.|....++..|.+.+++--+.+ -.-+..+...|+.+|- .|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHH
Confidence 65555444332111 00111 1234455555566667777777776643321 1224556666666653 45666
Q ss_pred HHHHHH
Q 006981 322 AAFEIL 327 (623)
Q Consensus 322 ~a~~~~ 327 (623)
++..++
T Consensus 245 ~~~kvl 250 (308)
T KOG1585|consen 245 EIKKVL 250 (308)
T ss_pred HHHHHH
Confidence 555544
No 255
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.78 E-value=5.6 Score=38.13 Aligned_cols=118 Identities=12% Similarity=0.018 Sum_probs=80.9
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHccCCHH
Q 006981 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN----ALITACGQSGAVD 214 (623)
Q Consensus 139 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~----~li~~~~~~g~~~ 214 (623)
-.|+..+|-..++++.+. .+.|..+++--=++|.-.|+.+.-...+++.... ..||...|. ...-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 457777777777777764 3567777777778888888888888888887654 133432222 2334455678888
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 006981 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261 (623)
Q Consensus 215 ~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 261 (623)
+|.+.-++..+.+ +.|...-.++...+...|+..++.++..+-.
T Consensus 193 dAEk~A~ralqiN---~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 193 DAEKQADRALQIN---RFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred hHHHHHHhhccCC---CcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 8888888776532 4456666677777788888888887766543
No 256
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.69 E-value=3.7 Score=33.48 Aligned_cols=87 Identities=17% Similarity=0.154 Sum_probs=68.6
Q ss_pred HhhhHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCChh
Q 006981 71 CKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD---CKLYTTLITTCAKSGKVD 144 (623)
Q Consensus 71 ~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~ 144 (623)
....|+++.|++.|.+. .+.+...||.-..++.-.|+.++|+.=+++..+..-..+ ...|..-...|...|+.+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 45678899999999875 367889999999999999999999999998887532222 223444455677889999
Q ss_pred HHHHHHHHHHHCC
Q 006981 145 AMFEVFHEMVNAG 157 (623)
Q Consensus 145 ~A~~~~~~m~~~g 157 (623)
.|..-|+..-+.|
T Consensus 133 ~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 133 AARADFEAAAQLG 145 (175)
T ss_pred HHHHhHHHHHHhC
Confidence 9999999888776
No 257
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.36 E-value=9 Score=33.25 Aligned_cols=133 Identities=14% Similarity=0.131 Sum_probs=65.2
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 006981 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (623)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (623)
+.++.+.+.+++|+...+..+++.+.+.|++....+++.- ++-+|.......+-.+. +....+.++=-.|.+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~------~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY------HVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh------cccCCcHHHHHHHHHhH--ccChHHHHHHHHHHH
Confidence 3344455566677777777777777777766555444432 23334333332221111 122222222222222
Q ss_pred c-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 263 Y-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (623)
Q Consensus 263 ~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (623)
+ + ..+..+++.+...|++-+|++..+..... +......++++..+.++...-..+++...+
T Consensus 87 RL~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 87 RLG-----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred Hhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 1 24556666777777777777776654322 112234455555555655555555554444
No 258
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.34 E-value=12 Score=34.71 Aligned_cols=22 Identities=9% Similarity=0.111 Sum_probs=11.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 006981 346 MGACSNAKNWQKALELYEHMKS 367 (623)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~ 367 (623)
.+-|.+.|.+..|..-++.|.+
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e 195 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLE 195 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHh
Confidence 3445555555555555555544
No 259
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.14 E-value=2.7 Score=39.77 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 006981 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVIPDEVFLSAL 310 (623)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~~p~~~~~~~l 310 (623)
++..++..+...|+.+.+...++.+.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45566666777777777777777777665 56667777777777777777777777776654 4666665555444
Q ss_pred HHH
Q 006981 311 IDF 313 (623)
Q Consensus 311 i~~ 313 (623)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 433
No 260
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.90 E-value=9.1 Score=32.80 Aligned_cols=52 Identities=13% Similarity=0.070 Sum_probs=25.3
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 006981 103 ASSKDSEGAFQVLRLVQEAGLKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (623)
Q Consensus 103 ~~~~~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (623)
.+.++.+++..++..+.-. .|... .-..-...+.+.|++.+|..+|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3445566666666555543 22211 1111223344566666666666665544
No 261
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.85 E-value=16 Score=35.33 Aligned_cols=131 Identities=14% Similarity=0.260 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--cC----CHHHHHHHHHHHhhCCCCC-CCCHHHHHHHHHHHHHcCC-
Q 006981 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQ--SG----AVDRAFDVLAEMNAEVHPV-DPDHITIGALMKACANAGQ- 249 (623)
Q Consensus 178 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~~~~~-~~~~~~~~~ll~~~~~~g~- 249 (623)
+++.+.+++.|.+.|+..+..+|-+....... .. ....|..+|+.|++..+-+ .++..++..++.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667888999999998888776653333322 22 2567889999998863222 2445566666543 3333
Q ss_pred ---hHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006981 250 ---VDRAREVYKMIHKYNIKGTPE--VYTIAINCCSQTGD--WEFACSVYDDMTKKGVIPDEVFLSAL 310 (623)
Q Consensus 250 ---~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~--~~~A~~l~~~m~~~~~~p~~~~~~~l 310 (623)
.+.++.+|+.+.+.|+..+.. ....++........ ...+.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 345666777777766554322 22222222211111 33566666666666666555554433
No 262
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.77 E-value=6.8 Score=33.56 Aligned_cols=50 Identities=12% Similarity=0.017 Sum_probs=29.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC
Q 006981 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (623)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (623)
+.++.+++..+++.+.-.. |........-...+...|++.+|.++|+.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred ccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 5667777777777776554 4444444444444555566666666666654
No 263
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=90.53 E-value=13 Score=33.71 Aligned_cols=200 Identities=17% Similarity=0.075 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 006981 235 ITIGALMKACANAGQVDRAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID- 312 (623)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~- 312 (623)
.........+...+.+..+...+...... ........+......+...+.+..+.+.+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 44455555566666666666666555442 2233344555555666666666666666666665433321 11222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 006981 313 FAGHAGKVEAAFEILQEAKNQGI--SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390 (623)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 390 (623)
.+...|+++.|...+........ ......+......+...++.+.+...+..............+..+...+...+..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 56667777777777777644221 1223334444444666777777877777776543111355666777777777778
Q ss_pred hhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 391 PKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 391 ~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
++|...+...... .|+ ...+..+...+...+..+++...+.+..+
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888777763 343 33444444444466667777777777665
No 264
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.35 E-value=23 Score=36.26 Aligned_cols=59 Identities=12% Similarity=0.146 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 309 ALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (623)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (623)
.+...+-+.|+.++|.+.+++|.+.... .+..+...|+.++...+.+.++..++.+-.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3444455667777777777777654311 2334556667777777777777777766544
No 265
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.31 E-value=26 Score=39.79 Aligned_cols=137 Identities=13% Similarity=0.101 Sum_probs=63.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHH
Q 006981 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI----TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240 (623)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l 240 (623)
|.-.++.--+.|.+.+|+.++ .|+...+..+. .-+...+.+++|.-.|+..-+ ..-.
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----------lekA 971 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK-----------LEKA 971 (1265)
T ss_pred cHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc-----------HHHH
Confidence 333344444556666666554 23333333333 333344555565555544321 1223
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006981 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320 (623)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 320 (623)
+.+|-.+|++.+|..+..++....- .-..+-..|+.-+...+++-+|-++..+-... |. -.+..+++...+
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~~d-e~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~-----~av~ll~ka~~~ 1042 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEGKD-ELVILAEELVSRLVEQRKHYEAAKILLEYLSD---PE-----EAVALLCKAKEW 1042 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCCHH-HHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---HH-----HHHHHHhhHhHH
Confidence 4555666666666666655432110 00111245555566666666666665554432 11 122234444555
Q ss_pred HHHHHHHHH
Q 006981 321 EAAFEILQE 329 (623)
Q Consensus 321 ~~a~~~~~~ 329 (623)
++|..+-..
T Consensus 1043 ~eAlrva~~ 1051 (1265)
T KOG1920|consen 1043 EEALRVASK 1051 (1265)
T ss_pred HHHHHHHHh
Confidence 555555443
No 266
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=90.28 E-value=22 Score=35.81 Aligned_cols=145 Identities=10% Similarity=0.131 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 006981 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM-NALI 381 (623)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~li 381 (623)
...|...+..-.+..-++.|..+|.+..+.+ ..+++.++++++..++ .|+..-|..+|+--... -||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4567777777778888899999999998887 5678888888888765 56777888888754332 3454443 4556
Q ss_pred HHHHcCCChhhHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 382 TALCDGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (623)
Q Consensus 382 ~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (623)
.-+..-++-+.|..+|+..... +..+ ...|..+|+--+.-|++..+..+-++|.+ .-|...+-....+.|
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 6677788888899999865543 2333 56788888888888999888888888876 344443333333333
No 267
>PRK09687 putative lyase; Provisional
Probab=90.24 E-value=18 Score=34.80 Aligned_cols=236 Identities=14% Similarity=0.055 Sum_probs=120.7
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh----hHHHHHHHHHHHCCCCCCH
Q 006981 87 VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----DAMFEVFHEMVNAGIEPNV 162 (623)
Q Consensus 87 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~~~~ 162 (623)
+.++|.......+.++...|. +.+...+..+.. .+|...-...+.++++.|+. +++...+..+... .++.
T Consensus 32 L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~ 105 (280)
T PRK09687 32 LDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSA 105 (280)
T ss_pred HhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCH
Confidence 345666666666666666664 333333433433 34556666667777777763 3566666665333 4566
Q ss_pred HHHHHHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHH
Q 006981 163 HTYGALIDGCAKAGQV-----AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (623)
Q Consensus 163 ~~~~~li~~~~~~g~~-----~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 237 (623)
.+-...+.++...+.. ..+...+..... .++..+-...+.++++.++ +++...+-.+.. .+|..+-
T Consensus 106 ~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~-----d~~~~VR 176 (280)
T PRK09687 106 CVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK-----DPNGDVR 176 (280)
T ss_pred HHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc-----CCCHHHH
Confidence 6666666666554321 223333333322 2244444556666666665 345555555543 2344444
Q ss_pred HHHHHHHHHcC-ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006981 238 GALMKACANAG-QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (623)
Q Consensus 238 ~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 316 (623)
...+.++.+.+ +-..+...+..+.. .++..+....+.++.+.+.. .|...+-+..+.+ + .....+.++..
T Consensus 177 ~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ 247 (280)
T PRK09687 177 NWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGE 247 (280)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHh
Confidence 44444555442 12344444444443 33456666666677776663 4555555544442 2 12345556666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (623)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (623)
.|.. +|...+..+.+.. +|..+-...+.++
T Consensus 248 ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 248 LGDK-TLLPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred cCCH-hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence 6663 4666665555432 3444444444433
No 268
>PRK11906 transcriptional regulator; Provisional
Probab=90.19 E-value=23 Score=36.04 Aligned_cols=78 Identities=13% Similarity=0.070 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (623)
Q Consensus 287 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (623)
+|.++-+...+.+.. |......+..+....++++.|...|++....+ +....+|......+.-+|+.++|.+.+++..
T Consensus 322 ~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 322 KALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 444444444444332 44444444444444455555555555554443 1122233333333344555555555555533
No 269
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.09 E-value=1.1 Score=28.89 Aligned_cols=21 Identities=10% Similarity=0.189 Sum_probs=7.9
Q ss_pred HHHHHHcCChhHHHHHHHHHH
Q 006981 134 ITTCAKSGKVDAMFEVFHEMV 154 (623)
Q Consensus 134 i~~~~~~g~~~~A~~~~~~m~ 154 (623)
...|...|++++|.++|++..
T Consensus 8 a~~~~~~G~~~~A~~~~~~~l 28 (44)
T PF13428_consen 8 ARAYRRLGQPDEAERLLRRAL 28 (44)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 333333333333333333333
No 270
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.00 E-value=25 Score=36.07 Aligned_cols=81 Identities=15% Similarity=0.241 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCH--HHHH
Q 006981 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK-PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT--ITYS 413 (623)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~ 413 (623)
+-..+-..|..++-+.|+.++|.+.|++|.+.... -+......|+.++...+.+.++..++.+-.+.. -|.. ..|+
T Consensus 257 ~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-lpkSAti~YT 335 (539)
T PF04184_consen 257 VLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-LPKSATICYT 335 (539)
T ss_pred hhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-CCchHHHHHH
Confidence 33444456777778899999999999999754322 234466679999999999999999999875432 2443 3466
Q ss_pred HHHHH
Q 006981 414 ILLVA 418 (623)
Q Consensus 414 ~ll~a 418 (623)
..+-.
T Consensus 336 aALLk 340 (539)
T PF04184_consen 336 AALLK 340 (539)
T ss_pred HHHHH
Confidence 65533
No 271
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.90 E-value=20 Score=34.92 Aligned_cols=126 Identities=15% Similarity=0.094 Sum_probs=58.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHH--
Q 006981 240 LMKACANAGQVDRAREVYKMIHKYN-----IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK----KGVIPDEVFLS-- 308 (623)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~~~~p~~~~~~-- 308 (623)
+..++...+.++++++.|+...+.- ......++..|-+.|.+..++++|.-...+..+ .++.--..-|.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4444444555555655555543321 011223556666666666666665544433322 12211111121
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 309 ---ALIDFAGHAGKVEAAFEILQEAKN----QGISV-GIISYSSLMGACSNAKNWQKALELYEHM 365 (623)
Q Consensus 309 ---~li~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (623)
.+.-++...|.+..|.+.-++..+ .|-.+ -......+.+.|...|+.+.|+.-|++.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 222244455655555555554432 23111 1233445566667777777766666543
No 272
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.40 E-value=8.8 Score=33.96 Aligned_cols=96 Identities=13% Similarity=0.044 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHH--HH
Q 006981 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN--VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP-DRVVFN--AL 203 (623)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~--~l 203 (623)
.+..+.+.|++.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+.....+....--.+ |...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 455566666666666666666666655432222 2344555566666666666665555543321111 111111 11
Q ss_pred HH--HHHccCCHHHHHHHHHHHh
Q 006981 204 IT--ACGQSGAVDRAFDVLAEMN 224 (623)
Q Consensus 204 i~--~~~~~g~~~~A~~~~~~m~ 224 (623)
.. .+...+++.+|-+.|-+..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 11 1233567777777776554
No 273
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.15 E-value=13 Score=36.15 Aligned_cols=165 Identities=15% Similarity=0.046 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHH
Q 006981 271 VYTIAINCCSQTGDWEFACSVYDDMTK-KGVIPD---EVFLSALIDFAGHAGKVEAAFEILQEAKNQG-----ISVGIIS 341 (623)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~-~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~ 341 (623)
.|..+..++-+..++.+++.+-..-.. .|..|. -....++-.+....+.++++++.|+...+.- .-....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344444555454455555554443322 122221 1122334445555666777777777665431 1123456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCH-HHHH-----HHHHHHHcCCChhhHHHHHHHHHH----CCCCC
Q 006981 342 YSSLMGACSNAKNWQKALELYEHMKS----IKLKPTV-STMN-----ALITALCDGDQLPKTMEVLSDMKS----LGLCP 407 (623)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~-~~~~-----~li~~~~~~g~~~~A~~l~~~m~~----~g~~p 407 (623)
+..|-..|.+..++++|.-+.....+ .++. |. .-|. .|.-++...|...+|.+.-++..+ .|-+|
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 77788888888888887766554432 2221 21 1222 234467777888888777776533 34332
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 408 N-TITYSILLVACERKDDVEVGLMLLSQAK 436 (623)
Q Consensus 408 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (623)
. ......+.+.|...|+.+.|+.-+++..
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2 2234456677888888888887777654
No 274
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.58 E-value=4.6 Score=41.87 Aligned_cols=156 Identities=13% Similarity=0.159 Sum_probs=75.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChH
Q 006981 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSE 109 (623)
Q Consensus 30 ~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 109 (623)
.-|..++-.|+++.|-.++..+.+. .+..+.+...++|-.++|+.+- ++||. -.....+.|+++
T Consensus 591 leyqt~vmrrd~~~a~~vLp~I~k~--------~rt~va~Fle~~g~~e~AL~~s---~D~d~-----rFelal~lgrl~ 654 (794)
T KOG0276|consen 591 LEYQTLVLRRDLEVADGVLPTIPKE--------IRTKVAHFLESQGMKEQALELS---TDPDQ-----RFELALKLGRLD 654 (794)
T ss_pred HHHHHHhhhccccccccccccCchh--------hhhhHHhHhhhccchHhhhhcC---CChhh-----hhhhhhhcCcHH
Confidence 3455556666666666555444321 1223333344455555554431 11111 112233455666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (623)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (623)
.|.++..+.. +..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+.+....+=....
T Consensus 655 iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 655 IAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred HHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHH
Confidence 6655554332 344566666666666666666666555432 4455555555565554444444444
Q ss_pred hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006981 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222 (623)
Q Consensus 190 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 222 (623)
+.|. .|.-.-+|...|+++++.+++..
T Consensus 720 ~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 720 KQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred hhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 4431 12222344555666666665544
No 275
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.36 E-value=6.2 Score=37.48 Aligned_cols=48 Identities=15% Similarity=0.318 Sum_probs=26.2
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (623)
Q Consensus 389 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (623)
++++++.++..=+..|+.||..|++.+++.+.+.+++.+|.++.-.|+
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555554444
No 276
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.15 E-value=14 Score=40.21 Aligned_cols=175 Identities=11% Similarity=0.051 Sum_probs=81.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006981 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG----CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206 (623)
Q Consensus 131 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 206 (623)
..-++.+.+...++.|+.+-+.- + .+..+...+... +-+.|++++|...|-+-+.. +.| ..+|.-
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 34455555666666665554332 1 233333333332 33456666666666555432 122 123444
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 006981 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (623)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (623)
|.....+..-..+++.+.+.+ + .+...-+.|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.+
T Consensus 407 fLdaq~IknLt~YLe~L~~~g--l-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKG--L-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcc--c-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 555555555555555555532 2 222333456666666666666555555443 2210 001233444555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (623)
Q Consensus 287 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (623)
+|..+-..... +......+ +-..+++++|++.+..+
T Consensus 481 ~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 55544433222 12222222 23346666666666543
No 277
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.83 E-value=18 Score=31.51 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=11.5
Q ss_pred HHHHHHHHcCCChhhHHHHHHH
Q 006981 378 NALITALCDGDQLPKTMEVLSD 399 (623)
Q Consensus 378 ~~li~~~~~~g~~~~A~~l~~~ 399 (623)
..++..+...|++-+|+++.+.
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHH
Confidence 3444455555555555555544
No 278
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.53 E-value=28 Score=33.50 Aligned_cols=161 Identities=14% Similarity=0.107 Sum_probs=89.6
Q ss_pred HcCCChHHHHHHHHHHHHcC--CCCCH------HHHHHHHHHHHHcCChhHHHHHHHHHHHC--------CCCCCH----
Q 006981 103 ASSKDSEGAFQVLRLVQEAG--LKADC------KLYTTLITTCAKSGKVDAMFEVFHEMVNA--------GIEPNV---- 162 (623)
Q Consensus 103 ~~~~~~~~A~~~~~~m~~~g--~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~~~~---- 162 (623)
.+.|+.+.|..++.+....- ..|+. ..|+.-.+.+.+..+++.|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45677777777776665432 12321 23443344443333777777666654332 122332
Q ss_pred -HHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHH
Q 006981 163 -HTYGALIDGCAKAGQVA---KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (623)
Q Consensus 163 -~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 238 (623)
.+...++.+|...+..+ +|.++++.+.... +-....+..-+..+.+.++.+.+.+.+.+|.... .-....+.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~---~~~e~~~~ 159 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV---DHSESNFD 159 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc---ccccchHH
Confidence 45677788888777654 5666666665442 2224555556777777899999999999998752 21223444
Q ss_pred HHHHHH---HHcCChHHHHHHHHHHHhcCCCCC
Q 006981 239 ALMKAC---ANAGQVDRAREVYKMIHKYNIKGT 268 (623)
Q Consensus 239 ~ll~~~---~~~g~~~~A~~~~~~~~~~~~~~~ 268 (623)
..+..+ .... ...|...++.+....+.|.
T Consensus 160 ~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 160 SILHHIKQLAEKS-PELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCC
Confidence 444444 3322 3445555555544434443
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.94 E-value=7.1 Score=34.52 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=8.5
Q ss_pred cCCHHHHHHHHHHHH
Q 006981 282 TGDWEFACSVYDDMT 296 (623)
Q Consensus 282 ~g~~~~A~~l~~~m~ 296 (623)
.+++.+|-+.|-+..
T Consensus 126 ~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 126 QRDFKEAAELFLDSL 140 (177)
T ss_pred hchHHHHHHHHHccC
Confidence 456666666665543
No 280
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.86 E-value=20 Score=31.12 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=10.0
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 006981 173 AKAGQVAKAFGAYGIMRSKN 192 (623)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g 192 (623)
++.+..++|+..|..+.+.|
T Consensus 69 A~~~k~d~Alaaf~~lektg 88 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTG 88 (221)
T ss_pred HHcCCchHHHHHHHHHHhcC
Confidence 34444555555555555443
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.56 E-value=1.7 Score=26.53 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 006981 165 YGALIDGCAKAGQVAKAFGAYGI 187 (623)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~ 187 (623)
|+.|...|.+.|++++|+.+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555556666666666666655
No 282
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.23 E-value=8.4 Score=29.61 Aligned_cols=62 Identities=19% Similarity=0.276 Sum_probs=49.8
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHH
Q 006981 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK-EDGVIPNLVMFKCIIGM 453 (623)
Q Consensus 390 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~-~~g~~p~~~~~~~li~~ 453 (623)
.-++.+-++.+....+.|+.....+.+.||.+..++..|.++|+-++ +.|. +...|..+++-
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lqe 85 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQE 85 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHHH
Confidence 34566777777777889999999999999999999999999999877 4343 55578877754
No 283
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.16 E-value=55 Score=35.55 Aligned_cols=151 Identities=10% Similarity=0.086 Sum_probs=86.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC--chHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCh
Q 006981 31 SYNRLIRQGRISECIDLLEDMERKGLLDM--DKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDS 108 (623)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 108 (623)
..+-|++.+.+++|+++-+.-...- +. ..-....++..+...|++++|-+..-.|...+..-|.--+..++..++.
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~--~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNE--ERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQL 439 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCc--cccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcccccc
Confidence 3556899999999998877654332 21 2223333344445568888888888888877888888877777777665
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH------------------HHCCCCCCHHHHHHHHH
Q 006981 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM------------------VNAGIEPNVHTYGALID 170 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------------------~~~g~~~~~~~~~~li~ 170 (623)
..... .+.......+...|..++..+.. .+...-.++..+. .+. .-+...-..|+.
T Consensus 440 ~~Ia~---~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La~ 513 (846)
T KOG2066|consen 440 TDIAP---YLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLAH 513 (846)
T ss_pred chhhc---cCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHHH
Confidence 43322 22222212345567777766665 2222211111111 000 112223334777
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 006981 171 GCAKAGQVAKAFGAYGIMR 189 (623)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~ 189 (623)
.|...+++..|+.++-..+
T Consensus 514 LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 514 LYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHccChHHHHHHHHhcc
Confidence 7777788888877776665
No 284
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.69 E-value=1.4 Score=26.50 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=17.0
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006981 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (623)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 289 (623)
+..+.+ |.+..+|+.+...|...|++++|+
T Consensus 4 kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 333433 445566666666666666666654
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=85.57 E-value=1.9 Score=26.30 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=11.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHH
Q 006981 95 FNMLMSVCASSKDSEGAFQVLRL 117 (623)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~ 117 (623)
|+.|...|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44445555555555555555554
No 286
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=85.55 E-value=27 Score=31.50 Aligned_cols=202 Identities=17% Similarity=0.134 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 006981 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277 (623)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 277 (623)
..+......+...+....+...+...... .........+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALEL-ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 33344444444444444444444443320 0012223333334444444444555555555544432211 111112222
Q ss_pred -HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006981 278 -CCSQTGDWEFACSVYDDMTKKGV--IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (623)
Q Consensus 278 -~~~~~g~~~~A~~l~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 354 (623)
.+...|+++.|...+.+...... ......+......+...++.+.+...+....+.........+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 45566666666666666543211 012223333333355566677777777666655321135566666677777777
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhhHHHHHHHHHHC
Q 006981 355 WQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (623)
Q Consensus 355 ~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 403 (623)
++.|...+....... |+ ...+..+...+...+..+++...+.+....
T Consensus 218 ~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777776542 32 334444444444666677787777777663
No 287
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=84.97 E-value=46 Score=33.62 Aligned_cols=131 Identities=13% Similarity=0.149 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHH-HHH
Q 006981 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT-IGA 239 (623)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~~~ 239 (623)
..+|..+++.-.+..-.+.|..+|-+..+.| +.+++..++++|.-++ .|+...|..+|+--... -||... -+-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~----f~d~~~y~~k 471 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK----FPDSTLYKEK 471 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh----CCCchHHHHH
Confidence 4456666666666666677777777776666 5566666666666544 35566666666654332 233322 234
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 240 LMKACANAGQVDRAREVYKMIHKYNIKGT--PEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
.+..+.+.++-+.|..+|+....+- ..+ ...|..+|+.-.+-|+...+..+=+.|...
T Consensus 472 yl~fLi~inde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 4555566667777777776433221 111 245666666666666666666555555543
No 288
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.66 E-value=17 Score=28.34 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 006981 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMC 454 (623)
Q Consensus 392 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~g~~p~~~~~~~li~~~ 454 (623)
+..+-++.+....+.|+.....+.|.||.+..++..|.++|+-++. .|-. ...|..++.-+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lqEl 89 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHHHH
Confidence 5566677777778899999999999999999999999999998874 4533 33788887653
No 289
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=84.10 E-value=66 Score=34.70 Aligned_cols=146 Identities=9% Similarity=0.050 Sum_probs=33.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006981 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (623)
Q Consensus 290 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (623)
...+.+...-...+......++..|.+.|-.+.|.++.+.+-..-. ...-|..-+.-+.++|+......+-+.+.+..
T Consensus 391 ~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~ 468 (566)
T PF07575_consen 391 ERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEEY 468 (566)
T ss_dssp HHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3334444332334566677888888888888888888876654421 12345555556666666655555544444322
Q ss_pred CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006981 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA---CERKDDVEVGLMLLSQAKEDGVIPNLVM 446 (623)
Q Consensus 370 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a---~~~~g~~~~a~~~~~~~~~~g~~p~~~~ 446 (623)
+..+......++....... +..+.-++-..+.- ..+.|+..+|.+.+-.+.+.++.|...-
T Consensus 469 ~~~~~~~~~~ll~~i~~~~----------------~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~ 532 (566)
T PF07575_consen 469 CNNGEPLDDDLLDNIGSPM----------------LLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSFW 532 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcCCCcccHHHHHHhcchh----------------hhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHHH
Confidence 2222222222222211111 01111111111111 1334777777777767777777777666
Q ss_pred HHHHHHH
Q 006981 447 FKCIIGM 453 (623)
Q Consensus 447 ~~~li~~ 453 (623)
..-|.++
T Consensus 533 ~~LL~d~ 539 (566)
T PF07575_consen 533 PLLLCDA 539 (566)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 5555554
No 290
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.88 E-value=37 Score=31.67 Aligned_cols=209 Identities=14% Similarity=0.156 Sum_probs=115.7
Q ss_pred CCCCCCCCCCCCCCccCChhhhHHHHHHHH-hcCCHHHHHHHHHHHHHcCC--CCCchHHHHHHHHHHhhhHHHHHHHHH
Q 006981 7 NMLQFPYPNGKHANYAHDVSEQLHSYNRLI-RQGRISECIDLLEDMERKGL--LDMDKVYHARFFNVCKSQKAIKEAFRF 83 (623)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~A~~l~~~m~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 83 (623)
-..+|.|.... +-..+++-...-||.=. +...+++|+.-|++..+... -.|+.-..-.++...-+.+.+++....
T Consensus 10 EDYg~EYsdds--~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~ 87 (440)
T KOG1464|consen 10 EDYGFEYSDDS--NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMER 87 (440)
T ss_pred hhcCceecccc--CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHH
Confidence 34555565432 22223333333444332 66799999999999876431 135544444555666667778888877
Q ss_pred hhhCC---------CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 006981 84 FKLVP---------NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-----GLKADCKLYTTLITTCAKSGKVDAMFEV 149 (623)
Q Consensus 84 ~~~~~---------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----g~~~~~~~~~~li~~~~~~g~~~~A~~~ 149 (623)
|.++. .-+..+.|+++...+.+.+.+.-...++.-.+. +-..--.|-+.|...|...+.+..-.++
T Consensus 88 Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KI 167 (440)
T KOG1464|consen 88 YKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKI 167 (440)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHH
Confidence 77653 234557788887777666655554444332211 0011112334566667777777777777
Q ss_pred HHHHHHC-----CC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH-----HccCC
Q 006981 150 FHEMVNA-----GI------EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-NVKPDRVVFNALITAC-----GQSGA 212 (623)
Q Consensus 150 ~~~m~~~-----g~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~-----~~~g~ 212 (623)
+.++... |- ..=...|..=|.+|....+-.+-..+|++.... .--|.+... .+|+-| .+.|+
T Consensus 168 lkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~ 246 (440)
T KOG1464|consen 168 LKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGE 246 (440)
T ss_pred HHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccch
Confidence 7766532 10 111345666777777777777777777766532 112333332 234433 34566
Q ss_pred HHHHHH
Q 006981 213 VDRAFD 218 (623)
Q Consensus 213 ~~~A~~ 218 (623)
+++|-.
T Consensus 247 fe~AhT 252 (440)
T KOG1464|consen 247 FEKAHT 252 (440)
T ss_pred HHHHHh
Confidence 766653
No 291
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=83.66 E-value=2.5 Score=25.15 Aligned_cols=26 Identities=12% Similarity=0.017 Sum_probs=11.0
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHH
Q 006981 377 MNALITALCDGDQLPKTMEVLSDMKS 402 (623)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (623)
|..+...|...|++++|+..|++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 33444444444444444444444433
No 292
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=83.40 E-value=39 Score=31.50 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=29.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 006981 173 AKAGQVAKAFGAYGIMRSKNV--KPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (623)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (623)
.+.|++++|.+.|+.+...-. +-...+--.++-++-+.+++++|...+++....
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 345666666666666654410 112233444555556666666666666666554
No 293
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.18 E-value=13 Score=38.81 Aligned_cols=26 Identities=19% Similarity=0.149 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 162 VHTYGALIDGCAKAGQVAKAFGAYGI 187 (623)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (623)
..-|..|.++..+.+++..|.+.|.+
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHh
Confidence 33444444444444444444444443
No 294
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.97 E-value=28 Score=29.47 Aligned_cols=51 Identities=12% Similarity=-0.014 Sum_probs=35.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCC
Q 006981 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN 89 (623)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 89 (623)
..++++++..+++.|.--. |........-...+...|++++|.++|+.+..
T Consensus 22 ~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 5788888888888887654 44444444445556667788888888887764
No 295
>PRK09687 putative lyase; Provisional
Probab=82.83 E-value=47 Score=31.98 Aligned_cols=137 Identities=11% Similarity=-0.044 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG-KVEAAFEILQEAKNQGISVGIISYSSLM 346 (623)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li 346 (623)
+..+-...+.++.+.++ .++...+..+... +|...-...+.++.+.+ ..+.+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44555555666655554 3455555555542 23334444444444432 13344444444442 23555556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006981 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420 (623)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 420 (623)
.++.+.|+. .|...+-...+. ++ .....+.++...|.. +|+..+..+.+. .||..+-...+.+|.
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~---~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKK---GT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcC---Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 666666663 344444333332 22 123455666666664 566666666543 345555555555543
No 296
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.71 E-value=74 Score=34.20 Aligned_cols=183 Identities=15% Similarity=0.095 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHH--H-HHHcCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC-
Q 006981 108 SEGAFQVLRLVQEAGLKADCKLYTTLIT--T-CAKSGKVDAMFEVFHEMVN-------AGIEPNVHTYGALIDGCAKAG- 176 (623)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~--~-~~~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g- 176 (623)
...|.+.++...+.|. ........++. + +....+.+.|+..|....+ .| +.....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 4567888887777662 11222222222 2 3355678888888888766 44 2334555666666532
Q ss_pred ----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH--HcCC
Q 006981 177 ----QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ-SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA--NAGQ 249 (623)
Q Consensus 177 ----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~--~~g~ 249 (623)
+.+.|+.+|.+.-..| .|+....-..+..... ..+...|.++|......+ .++..-+.+++.... ...+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALCYELGLGVERN 379 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCCcCCC
Confidence 5566888887777776 3444443333332222 245677888877776542 122222211111111 2235
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006981 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300 (623)
Q Consensus 250 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 300 (623)
...|..++++..+.| .|....-...+..+.. +.++.+.-.+..+...|.
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 677777777777777 3322222223333333 666666666666655543
No 297
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=82.04 E-value=3.7 Score=24.32 Aligned_cols=32 Identities=28% Similarity=0.180 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006981 410 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443 (623)
Q Consensus 410 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~ 443 (623)
.+|..+..++...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4678888999999999999999999987 4454
No 298
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=81.51 E-value=2.2 Score=25.66 Aligned_cols=20 Identities=20% Similarity=0.317 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhcCCHHHH
Q 006981 162 VHTYGALIDGCAKAGQVAKA 181 (623)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A 181 (623)
..+|+.+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33333333333333333333
No 299
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.23 E-value=32 Score=29.08 Aligned_cols=49 Identities=14% Similarity=0.221 Sum_probs=30.4
Q ss_pred cCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 006981 104 SSKDSEGAFQVLRLVQEAGLKAD---CKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (623)
Q Consensus 104 ~~~~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (623)
..++.+++..++..|.-. .|+ ..++- .-.+...|++++|.++|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFD--GWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhH--HHHHHHcCCHHHHHHHHHhhhcc
Confidence 366777777777777653 332 22333 33355777788888888777765
No 300
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.20 E-value=22 Score=34.03 Aligned_cols=105 Identities=11% Similarity=0.104 Sum_probs=56.8
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHH
Q 006981 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270 (623)
Q Consensus 192 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 270 (623)
|.+....+...++..-....+++.+...+-.++..... ..|+ .+-.+.++.+. .-++++++.++..=.+.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~-~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRN-WTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcc-ccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 33444444444554444455666666666665542100 0111 11112222222 235556666666666677777777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 271 VYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
+++.+|+.+.+.+++.+|..+.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 7777777777777777776666655543
No 301
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=80.74 E-value=44 Score=30.29 Aligned_cols=180 Identities=16% Similarity=0.084 Sum_probs=98.0
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (623)
Q Consensus 248 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (623)
|-+..|+-=|....... +.-+.+||-+.-.+...|+++.|.+.|+...+.+..-+-...|.-|.. .-.|++..|.+-+
T Consensus 79 GL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHH
Confidence 33344444444444432 334678888888888888888888888888877554333333333322 2357888887776
Q ss_pred HHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCC
Q 006981 328 QEAKNQGIS-VGIISYSSLMGACSNAKNWQKALEL-YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405 (623)
Q Consensus 328 ~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 405 (623)
...-+.... |-...|--++ .+.-+..+|..- .++.. ..|..-|...|-.|.-..-.+ ..+++++... -
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~-a 226 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYLGKISE--ETLMERLKAD-A 226 (297)
T ss_pred HHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHHhhccH--HHHHHHHHhh-c
Confidence 666555321 2112222221 223345555543 33433 245555555444443222222 2233333331 1
Q ss_pred CCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006981 406 CPN-------TITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (623)
Q Consensus 406 ~p~-------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g 439 (623)
.-+ ..||--+..-+...|+.++|..+|+-.+...
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 111 2356667777888999999999998887643
No 302
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.74 E-value=46 Score=30.55 Aligned_cols=28 Identities=18% Similarity=0.433 Sum_probs=15.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 006981 350 SNAKNWQKALELYEHMKSIKLKPTVSTM 377 (623)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 377 (623)
+..+++.+|.++|+++....+..+..-|
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 3455566666666666554444343333
No 303
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.63 E-value=18 Score=32.29 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=10.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 006981 268 TPEVYTIAINCCSQTGDWEFA 288 (623)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A 288 (623)
|+..+.+|++.|.+.|+++.|
T Consensus 177 n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcchhhh
Confidence 444444444444444444443
No 304
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=80.05 E-value=56 Score=31.13 Aligned_cols=132 Identities=16% Similarity=0.190 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006981 284 DWEFACSVYDDMTK-KGVIPDEVFLSALIDFAGH-AG-KVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKAL 359 (623)
Q Consensus 284 ~~~~A~~l~~~m~~-~~~~p~~~~~~~li~~~~~-~g-~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~ 359 (623)
...+|+++|+.... ..+.-|......++..... .+ ....-.++.+.+... +-.++..+...++..+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34466666663222 2233466666666665544 11 222233333333332 34566777777888888888888888
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhhHHHHHHH-----HHHCCCCCCHHHHHHH
Q 006981 360 ELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSD-----MKSLGLCPNTITYSIL 415 (623)
Q Consensus 360 ~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~-----m~~~g~~p~~~t~~~l 415 (623)
+++...... +...|...|..+|....+.|+..-..++.++ +.+.|+..+...-..+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L 284 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQL 284 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHH
Confidence 887766543 4556777788888888888887665555544 2334444444443333
No 305
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=79.06 E-value=1e+02 Score=33.59 Aligned_cols=43 Identities=23% Similarity=0.292 Sum_probs=23.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 006981 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210 (623)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 210 (623)
.+|--|.|+|++++|.++..+.... .......+...+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 4455566777777777776444332 233445555666666554
No 306
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=78.44 E-value=40 Score=28.48 Aligned_cols=80 Identities=14% Similarity=0.265 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006981 377 MNALITALCDGDQLPKTMEVLSDMKSLG-----LCPNTITYSILLVACERKDD-VEVGLMLLSQAKEDGVIPNLVMFKCI 450 (623)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~g~~p~~~~~~~l 450 (623)
.|+++.-....+.+.-.+.+++.+..-. -.-+..+|.+++.+.++..- ---+..+|+.+.+.+.+++...|.+|
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555555555555555555543210 02345567888887766665 44567778888877788888888888
Q ss_pred HHHHHh
Q 006981 451 IGMCSR 456 (623)
Q Consensus 451 i~~~~~ 456 (623)
|..+.|
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 887765
No 307
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.36 E-value=24 Score=27.42 Aligned_cols=85 Identities=11% Similarity=0.166 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (623)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (623)
.++|..+-+.+...+-. ...+--+-+..+...|++++|..+.+.+. .||...|-+|-. .+.|..+++..-+.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 45555555555543311 22222222334556677777776666553 667777766644 456666666666666
Q ss_pred HHhCCCCCCHHHH
Q 006981 188 MRSKNVKPDRVVF 200 (623)
Q Consensus 188 m~~~g~~p~~~~~ 200 (623)
|..+| .|....|
T Consensus 94 la~sg-~p~lq~F 105 (115)
T TIGR02508 94 LAASG-DPRLQTF 105 (115)
T ss_pred HHhCC-CHHHHHH
Confidence 66655 3443333
No 308
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=78.20 E-value=4.9 Score=23.67 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=9.2
Q ss_pred HHHHHHHcCCChhhHHHHHHHHH
Q 006981 379 ALITALCDGDQLPKTMEVLSDMK 401 (623)
Q Consensus 379 ~li~~~~~~g~~~~A~~l~~~m~ 401 (623)
.+...|.+.|++++|++.|++..
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 33334444444444444444433
No 309
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=78.07 E-value=97 Score=32.69 Aligned_cols=128 Identities=9% Similarity=0.143 Sum_probs=85.4
Q ss_pred hhHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHH
Q 006981 27 EQLHSYNRLIRQG----RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLM 99 (623)
Q Consensus 27 ~~~~~~~~l~~~g----~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li 99 (623)
.+...|..|+..+ ..+.++..+..++..- |.-..+...++..=.+.|..+.+.++|++.. +-++..|...+
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky--Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSKY--PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYL 120 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3445677777433 3455666666666544 4444444444545556788899999998754 45667777776
Q ss_pred HHHH-cCCChHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 006981 100 SVCA-SSKDSEGAFQVLRLVQEA-GLK-ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (623)
Q Consensus 100 ~~~~-~~~~~~~A~~~~~~m~~~-g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (623)
..+. ..|+.+.....|+..... |.. .....|...|..-..++++.....+|++.++.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 6554 457788888888887753 221 23446777777777888999999999998863
No 310
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.03 E-value=31 Score=30.68 Aligned_cols=127 Identities=10% Similarity=0.078 Sum_probs=84.1
Q ss_pred hHHHHHHHH---hcCCHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC-CCCHHHHHH-----
Q 006981 28 QLHSYNRLI---RQGRISECIDLLEDMERKG-LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNM----- 97 (623)
Q Consensus 28 ~~~~~~~l~---~~g~~~~A~~l~~~m~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~----- 97 (623)
-...|..++ +.+.. +.....+.+...+ ...........+.......+++++|..-++... .+.-..+..
T Consensus 53 AS~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lR 131 (207)
T COG2976 53 ASAQYQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence 344455555 45555 6666677777665 222334444555667778889999999888654 333333333
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 006981 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (623)
Q Consensus 98 li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 157 (623)
|.+.....|.+++|+.+++.....+. .......-.+.+...|+-++|+.-|.+....+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 34567788999999999887765432 22233445678889999999999999988875
No 311
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=77.86 E-value=19 Score=27.78 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (623)
Q Consensus 287 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 331 (623)
++.+-++.+...+..|+.....+.+.+|-+.+++..|.++|+-++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444555555555555555555555555555555444
No 312
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.54 E-value=1.1e+02 Score=32.96 Aligned_cols=179 Identities=17% Similarity=0.169 Sum_probs=108.5
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHH----H-HHhcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHcc
Q 006981 143 VDAMFEVFHEMVNAGIEPNVHTYGALID----G-CAKAGQVAKAFGAYGIMRS-------KNVKPDRVVFNALITACGQS 210 (623)
Q Consensus 143 ~~~A~~~~~~m~~~g~~~~~~~~~~li~----~-~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~ 210 (623)
...|.++++...+.| +...-..+.. + +....+.+.|+..|+.+.+ .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 457888888888765 3333333322 2 4466789999999998876 45 334556666677664
Q ss_pred C-----CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----
Q 006981 211 G-----AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN-AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS---- 280 (623)
Q Consensus 211 g-----~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~---- 280 (623)
. +.+.|+.++......+ .|+....-..+..... ..+...|.++|....+.|.. .++-.+..+|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g---~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG---NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC---CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCC
Confidence 3 6677899888876642 4554333333222222 23567899999999888843 22222222222
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006981 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (623)
Q Consensus 281 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (623)
...+.+.|..++.+.-+.| .|-...-...+..+.. ++.+.+.-.+..+.+.|.
T Consensus 376 v~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 2346788888888888887 3332223333334444 777777777777766653
No 313
>PRK11619 lytic murein transglycosylase; Provisional
Probab=76.83 E-value=1.2e+02 Score=33.21 Aligned_cols=165 Identities=9% Similarity=-0.004 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329 (623)
Q Consensus 250 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 329 (623)
..++...++...... .+......-+..-...++++.+...+..|....- -...-.--+..++...|+.++|..+|+.
T Consensus 295 ~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~ 371 (644)
T PRK11619 295 TDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQ 371 (644)
T ss_pred CHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445555555443322 1223333344444466777777777776644321 1333444555555566777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCH---HH--HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCC
Q 006981 330 AKNQGISVGIISYSSLMGACSNAKNW---QK--ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404 (623)
Q Consensus 330 ~~~~~~~~~~~~~~~li~~~~~~g~~---~~--A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 404 (623)
+... . +|-.++. -.+.|.. .. .-..-..+ ..+ .-..-+..+...|...+|...+..+...
T Consensus 372 ~a~~---~---~fYG~LA-a~~Lg~~~~~~~~~~~~~~~~~-----~~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~- 436 (644)
T PRK11619 372 LMQQ---R---GFYPMVA-AQRLGEEYPLKIDKAPKPDSAL-----TQG--PEMARVRELMYWNMDNTARSEWANLVAS- 436 (644)
T ss_pred HhcC---C---CcHHHHH-HHHcCCCCCCCCCCCCchhhhh-----ccC--hHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence 6331 1 1222211 1111211 00 00000000 000 0112345667788888998888887764
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 405 LCPNTITYSILLVACERKDDVEVGLMLLSQ 434 (623)
Q Consensus 405 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 434 (623)
.+......+.....+.|..+.+......
T Consensus 437 --~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 437 --RSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred --CCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 3444555555556677887777766544
No 314
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=76.08 E-value=1.6e+02 Score=34.08 Aligned_cols=113 Identities=15% Similarity=0.193 Sum_probs=68.5
Q ss_pred CCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-
Q 006981 302 PDEVFLSALI----DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST- 376 (623)
Q Consensus 302 p~~~~~~~li----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~- 376 (623)
|+...+.-+. ..+.+.+.+++|.-.|...-+. .-.+.+|..+|++++|..+..++.. ..+...
T Consensus 933 ~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~ 1000 (1265)
T KOG1920|consen 933 PDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE---GKDELVI 1000 (1265)
T ss_pred cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHH
Confidence 4554444443 3444556677776666543221 2345677888888888888887763 223222
Q ss_pred -HHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 377 -MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434 (623)
Q Consensus 377 -~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 434 (623)
--.|+.-+...+++-+|-++..+.... |. ..+..+++...+++|.++-..
T Consensus 1001 ~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~-----~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1001 LAEELVSRLVEQRKHYEAAKILLEYLSD---PE-----EAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHHHcccchhHHHHHHHHhcC---HH-----HHHHHHhhHhHHHHHHHHHHh
Confidence 256788888899999998888877642 22 222334555566666665543
No 315
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=75.84 E-value=6.2 Score=24.52 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=11.3
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHH
Q 006981 376 TMNALITALCDGDQLPKTMEVLSDM 400 (623)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m 400 (623)
+++.|...|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 3444444444444444444444443
No 316
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=75.61 E-value=7.7 Score=22.77 Aligned_cols=28 Identities=18% Similarity=0.096 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 410 ITYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 410 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
..+..+...+...|++++|++.|++.++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566778889999999999999999887
No 317
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=75.56 E-value=0.94 Score=38.50 Aligned_cols=84 Identities=18% Similarity=0.203 Sum_probs=50.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006981 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424 (623)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 424 (623)
++..+.+.+..+.....++.+...+...+....+.++..|++.+..++..++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4455556666666667777776555445566777777777777766777666651 111333456666777777
Q ss_pred HHHHHHHHHHH
Q 006981 425 VEVGLMLLSQA 435 (623)
Q Consensus 425 ~~~a~~~~~~~ 435 (623)
++++..++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 77776666554
No 318
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=74.90 E-value=7.9 Score=24.03 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 164 TYGALIDGCAKAGQVAKAFGAYGIMR 189 (623)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (623)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555443
No 319
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.17 E-value=75 Score=29.48 Aligned_cols=204 Identities=12% Similarity=0.032 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006981 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (623)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (623)
.|.....+|....++++|..-+.+..+- .+.|...|. ....++.|.-+.++|.+. .--+..|+--...|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 4455556677777888877766655421 122222221 223345555555555443 111234555566677
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---C--CCCCHHHHHHHHHHHHhcC
Q 006981 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY---N--IKGTPEVYTIAINCCSQTG 283 (623)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~~~~li~~~~~~g 283 (623)
.+|..+.|-..+++.-+- ...-++++|+++|++.... + ...-...+...-..+.+..
T Consensus 103 E~GspdtAAmaleKAak~------------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA------------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HhCCcchHHHHHHHHHHH------------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 777777666666554331 1223444555555443221 0 0001123444555666666
Q ss_pred CHHHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCH
Q 006981 284 DWEFACSVYDDMTK----KGVIPDE-VFLSALIDFAGHAGKVEAAFEILQEAKNQG---ISVGIISYSSLMGACSNAKNW 355 (623)
Q Consensus 284 ~~~~A~~l~~~m~~----~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~ 355 (623)
++++|-..|.+-.. ..-.|+. ..|.+.|-.+....++..|...++.-.+.+ -.-+..+...|+.+| ..|+.
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~ 243 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDI 243 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCH
Confidence 77666555443221 1111111 224444445555566666666666533321 122344555555555 34555
Q ss_pred HHHHHH
Q 006981 356 QKALEL 361 (623)
Q Consensus 356 ~~A~~~ 361 (623)
+++.++
T Consensus 244 E~~~kv 249 (308)
T KOG1585|consen 244 EEIKKV 249 (308)
T ss_pred HHHHHH
Confidence 544443
No 320
>PRK11619 lytic murein transglycosylase; Provisional
Probab=72.84 E-value=1.5e+02 Score=32.47 Aligned_cols=252 Identities=8% Similarity=-0.006 Sum_probs=137.9
Q ss_pred cCChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 006981 140 SGKVDAMFEVFHEMVNAG-IEPN--VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216 (623)
Q Consensus 140 ~g~~~~A~~~~~~m~~~g-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 216 (623)
..+.+.|..++....... ..+. ..++..+....+..+...+|...++...... .+......-++.....++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 345678888888764432 2222 2234444444444433566777777654332 2334444455555688888888
Q ss_pred HHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 006981 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW-EFACSVYDDM 295 (623)
Q Consensus 217 ~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m 295 (623)
...+..|.... .....-.--+.+++...|+.++|...|+.+... . +|-.++..- +.|.. .-.......
T Consensus 332 ~~~i~~L~~~~---~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~---~fYG~LAa~-~Lg~~~~~~~~~~~~- 400 (644)
T PRK11619 332 NTWLARLPMEA---KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---R---GFYPMVAAQ-RLGEEYPLKIDKAPK- 400 (644)
T ss_pred HHHHHhcCHhh---ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---CcHHHHHHH-HcCCCCCCCCCCCCc-
Confidence 88888876532 222233334566667789999999999887442 1 222222111 11211 000000000
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC
Q 006981 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS-----IKL 370 (623)
Q Consensus 296 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~ 370 (623)
....+. .. .-..-+..+...|....|...+..+... .+......+.....+.|..+.+......... ...
T Consensus 401 ~~~~~~-~~-~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rf 475 (644)
T PRK11619 401 PDSALT-QG-PEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERF 475 (644)
T ss_pred hhhhhc-cC-hHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhC
Confidence 000000 00 1122334556778999999888888775 2444555666666678888777766543321 111
Q ss_pred CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHH
Q 006981 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412 (623)
Q Consensus 371 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 412 (623)
| ..|...+..+.+.-.++.++-.----.++++.|+..+-
T Consensus 476 -p--~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~S~ 514 (644)
T PRK11619 476 -P--LAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKARSP 514 (644)
T ss_pred -C--cchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCccC
Confidence 2 24777788887777788777554445678888887654
No 321
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=71.55 E-value=46 Score=25.93 Aligned_cols=79 Identities=11% Similarity=0.047 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 006981 40 RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119 (623)
Q Consensus 40 ~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 119 (623)
..++|-.+-+.+...+. ....+...-+....+.|++++|..+.+..+.||...|-+|-.. +.|-.+.+..-+.+|.
T Consensus 20 cHqEA~tIAdwL~~~~~--~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE--SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHH
Confidence 55677777777666552 1111211122234456777777777777777777777666432 3455555555555555
Q ss_pred HcC
Q 006981 120 EAG 122 (623)
Q Consensus 120 ~~g 122 (623)
..|
T Consensus 96 ~sg 98 (115)
T TIGR02508 96 ASG 98 (115)
T ss_pred hCC
Confidence 555
No 322
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=71.41 E-value=1.6 Score=36.97 Aligned_cols=53 Identities=15% Similarity=0.164 Sum_probs=24.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006981 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (623)
Q Consensus 134 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 186 (623)
++.+.+.+.++....+++.+...+...+....+.++..|++.++.++..+.++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444444445555555555543333344455555555555544444444444
No 323
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=70.66 E-value=34 Score=31.01 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=8.5
Q ss_pred HHHHHHHHcCChHHHHHHHH
Q 006981 239 ALMKACANAGQVDRAREVYK 258 (623)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~ 258 (623)
.++..+|-.|++++|..-++
T Consensus 40 flfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 40 FLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHHhhcchHHHHHHHHH
Confidence 34444444444444443333
No 324
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=70.24 E-value=1.7e+02 Score=31.95 Aligned_cols=191 Identities=17% Similarity=0.204 Sum_probs=102.2
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc--hHHHHHHHHHHh-hhHHHHHHHHHhhhCC----CCCHH-----H
Q 006981 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD--KVYHARFFNVCK-SQKAIKEAFRFFKLVP----NPTLS-----T 94 (623)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~--~~~~~~l~~~~~-~~~~~~~A~~~~~~~~----~~~~~-----~ 94 (623)
..+..|..||+ .|+..++.+.+...+++. ..++..++..+. ...++++|...+.+.. .++.. .
T Consensus 28 ~~l~~Y~kLI~-----~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~ 102 (608)
T PF10345_consen 28 EQLKQYYKLIA-----TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRC 102 (608)
T ss_pred hhHHHHHHHHH-----HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 34445555553 456677766643332322 233444444433 3455788888777642 22211 2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcC----CCCCHHHHHHH-HHHHHHcCChhHHHHHHHHHHHCC---CCCCHHHHH
Q 006981 95 FNMLMSVCASSKDSEGAFQVLRLVQEAG----LKADCKLYTTL-ITTCAKSGKVDAMFEVFHEMVNAG---IEPNVHTYG 166 (623)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~~~g----~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~ 166 (623)
-..+++.+.+.+... |...++...+.- ..+-...+..+ +..+...++...|.+.++.+...- ..|-..++.
T Consensus 103 ~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~ 181 (608)
T PF10345_consen 103 QFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA 181 (608)
T ss_pred HHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 234556666666555 888887766432 22233344444 333333478888888888876532 234445555
Q ss_pred HHHHHHH--hcCCHHHHHHHHHHHHhCC---------CCCCHHHHHHHHHHHH--ccCCHHHHHHHHHHH
Q 006981 167 ALIDGCA--KAGQVAKAFGAYGIMRSKN---------VKPDRVVFNALITACG--QSGAVDRAFDVLAEM 223 (623)
Q Consensus 167 ~li~~~~--~~g~~~~A~~~~~~m~~~g---------~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m 223 (623)
.++.+.. +.+..+++.+..+++.... ..|-..+|..+++.++ ..|+++.+.+.++++
T Consensus 182 ~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 182 SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555544 3455666766666663321 1345566777776554 456666665554443
No 325
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=69.99 E-value=33 Score=31.05 Aligned_cols=53 Identities=15% Similarity=0.130 Sum_probs=25.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006981 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (623)
Q Consensus 133 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 186 (623)
.++.+.+.+++.+++....+-++.. +.|..+-..++..+|-.|++++|..-++
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHH
Confidence 3444444555555555544444432 2234444455555555555555554443
No 326
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=69.43 E-value=69 Score=27.10 Aligned_cols=82 Identities=13% Similarity=0.202 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHcCCC-hhhHHHHHHHHHHCCCCCCHHHHHHH
Q 006981 342 YSSLMGACSNAKNWQKALELYEHMKSIK-----LKPTVSTMNALITALCDGDQ-LPKTMEVLSDMKSLGLCPNTITYSIL 415 (623)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~l 415 (623)
.|.++.-....+++.....+++.+.... -..+..+|.+++.+..+..- ---+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555555566655555555553210 02355678888888866655 33567788888887888899999999
Q ss_pred HHHHHhcC
Q 006981 416 LVACERKD 423 (623)
Q Consensus 416 l~a~~~~g 423 (623)
+.+|.+--
T Consensus 122 i~~~l~g~ 129 (145)
T PF13762_consen 122 IKAALRGY 129 (145)
T ss_pred HHHHHcCC
Confidence 98876653
No 327
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=68.21 E-value=47 Score=31.36 Aligned_cols=87 Identities=9% Similarity=0.008 Sum_probs=38.0
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--
Q 006981 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ-- 281 (623)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 281 (623)
|.+++..+++.++....-+--+....++|.+ ...-|-.|++.+.+..+.++-..-...--.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 4555555666555544333322212233332 222233355666555555544433322111122234444444433
Q ss_pred ---cCCHHHHHHHH
Q 006981 282 ---TGDWEFACSVY 292 (623)
Q Consensus 282 ---~g~~~~A~~l~ 292 (623)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 46666666654
No 328
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=67.97 E-value=1.6e+02 Score=30.65 Aligned_cols=181 Identities=12% Similarity=0.097 Sum_probs=125.5
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (623)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (623)
-|-...-+++..+..+.+.+-...+..+|..-| .+-..|..++..|... ..+.-..+|+++.+..+. |++.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 356677788999999999999999999999865 4567788899999888 557788999988887543 555555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Q 006981 170 DGCAKAGQVAKAFGAYGIMRSKNVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244 (623)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~ 244 (623)
.-|-+ ++.+.+...|.+...+=++. -...|..|...- ..+.+....+...+... .|...-.+.+.-+-.-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~-lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTK-LGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHh-hccchHHHHHHHHHHHh
Confidence 65555 88888888888876542210 123455554422 24566666666666543 34444556666666778
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 006981 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279 (623)
Q Consensus 245 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 279 (623)
....++++|++++..+.+.+ ..|..+...++..+
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 88899999999999888876 34444444555443
No 329
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=67.51 E-value=1.2e+02 Score=29.04 Aligned_cols=70 Identities=9% Similarity=0.023 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 006981 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-----DGVIPNLVMF 447 (623)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-----~g~~p~~~~~ 447 (623)
++.....|..+|.+.+|.++-++.+... +.+...+-.++..+...|+--.+.+-++++.+ .|+..+..++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 4445567888888888888888877642 33677777888888888887777666665532 3666655443
No 330
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=67.27 E-value=1e+02 Score=28.12 Aligned_cols=178 Identities=14% Similarity=0.062 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 006981 73 SQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149 (623)
Q Consensus 73 ~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 149 (623)
+.|-...|+-=|.+. .|.-+..||.+.--+...|+++.|.+.|+...+....-+-...|.-|. +.--|++.-|.+-
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d 155 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDD 155 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHH
Confidence 344445555555443 234456788888888888999999999988887653323222333332 2356788888777
Q ss_pred HHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHH-HccCCHHHHHHHHHHHhhC
Q 006981 150 FHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAY-GIMRSKNVKPDRVVFNALITAC-GQSGAVDRAFDVLAEMNAE 226 (623)
Q Consensus 150 ~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~g~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~ 226 (623)
|...-+.. -.|-...|--++. ..-++.+|..-+ ++... .|..-|...|-.+ ...=..+ .+++++...
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~ 225 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISEE---TLMERLKAD 225 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccHH---HHHHHHHhh
Confidence 76666543 1232334443332 334555555433 33332 2444444333322 2111122 233333321
Q ss_pred CCCCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 006981 227 VHPVDPD-------HITIGALMKACANAGQVDRAREVYKMIHKYN 264 (623)
Q Consensus 227 ~~~~~~~-------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 264 (623)
...+ ..||--|.+-+...|+.++|..+|+.....+
T Consensus 226 ---a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 226 ---ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred ---ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 0111 2345556666677777777777777766554
No 331
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=66.79 E-value=62 Score=32.99 Aligned_cols=147 Identities=15% Similarity=0.084 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHH
Q 006981 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273 (623)
Q Consensus 194 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 273 (623)
.|...--..-|.--...|++..|-+-+....+. .+-.|+.+...+.| ....|+++.+...+...... +.....+..
T Consensus 286 ~~~~~~~~~si~k~~~~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~ 361 (831)
T PRK15180 286 QDQIREITLSITKQLADGDIIAASQQLFAALRN-QQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLR 361 (831)
T ss_pred CcchhHHHHHHHHHhhccCHHHHHHHHHHHHHh-CCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHH
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006981 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345 (623)
Q Consensus 274 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 345 (623)
.++....+.|++++|..+-.-|....+. +....+......-..|-++++.-.|+++...+.+.+....|.+
T Consensus 362 ~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~ 432 (831)
T PRK15180 362 CRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFL 432 (831)
T ss_pred HHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeee
No 332
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=66.27 E-value=1.3e+02 Score=28.88 Aligned_cols=55 Identities=15% Similarity=0.103 Sum_probs=32.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295 (623)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 295 (623)
..+.|..+|.+.+|.++.+.....+ +.+...|-.++..+...|+--.|.+-++.+
T Consensus 285 va~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3445556666666666666666555 455556666666666666655555555444
No 333
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=65.32 E-value=67 Score=25.42 Aligned_cols=80 Identities=11% Similarity=0.118 Sum_probs=38.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (623)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (623)
...++|..+.+.+...+- ....+--.-+..+...|++++|+.. ......||...|-+|-. .+.|..+++...+
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~----~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLL----PQCHCYPDLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHH----HTTS--GGGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHh----cccCCCccHHHHHHHHH--HhhccHHHHHHHH
Confidence 345666666666665542 2222223333445566666666111 11112466666665543 4666666666666
Q ss_pred HHHHhCC
Q 006981 186 GIMRSKN 192 (623)
Q Consensus 186 ~~m~~~g 192 (623)
.++-.+|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 6665554
No 334
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=63.74 E-value=1e+02 Score=27.11 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 145 AMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (623)
Q Consensus 145 ~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (623)
+|.+.|++..+. +|+..+|+.-+...
T Consensus 98 kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 98 KATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 344444444433 56666666666655
No 335
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=63.68 E-value=49 Score=27.00 Aligned_cols=61 Identities=16% Similarity=0.273 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (623)
Q Consensus 392 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 453 (623)
+..+-++.+....+.|+......-+.||.+..++..|.++|+-++.. +.+...+|..+++-
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~e 127 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVKE 127 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHHH
Confidence 44555666677778999999999999999999999999999887643 33444467777654
No 336
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=63.43 E-value=22 Score=34.40 Aligned_cols=47 Identities=19% Similarity=0.019 Sum_probs=21.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006981 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360 (623)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 360 (623)
-|.+.|.+++|++.+....... +-|.+++..-..+|.+...+..|..
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~ 152 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEE 152 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHH
Confidence 3444555555555554443321 1144444444444555544444433
No 337
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=63.33 E-value=12 Score=21.60 Aligned_cols=18 Identities=17% Similarity=0.170 Sum_probs=7.6
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 006981 172 CAKAGQVAKAFGAYGIMR 189 (623)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~ 189 (623)
+.+.|++++|.+.|+++.
T Consensus 10 ~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 10 YYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHH
Confidence 333444444444444443
No 338
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=63.20 E-value=1.9e+02 Score=30.02 Aligned_cols=162 Identities=9% Similarity=0.106 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (623)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (623)
...-+++..+.++-.+.-++.+..+|...|- +...|..++..|... ..++-..+|.++.+..+. |++.-..|..-|
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 3444555555555555555555555555432 444555555555555 344455555555554321 333333444444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHcCCChhhHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcC
Q 006981 350 SNAKNWQKALELYEHMKSIKLKP-----TVSTMNALITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKD 423 (623)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g 423 (623)
.+ ++.+.+...|..+...-++. =...|.-++.-- ..+.+.-+.+..+... .|..--.+.+.-+-.-|....
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 43 55555555555544321110 011333333211 2334444444444432 233333444444555566666
Q ss_pred CHHHHHHHHHHHHHC
Q 006981 424 DVEVGLMLLSQAKED 438 (623)
Q Consensus 424 ~~~~a~~~~~~~~~~ 438 (623)
++.+|++++..+.++
T Consensus 220 N~~eai~Ilk~il~~ 234 (711)
T COG1747 220 NWTEAIRILKHILEH 234 (711)
T ss_pred CHHHHHHHHHHHhhh
Confidence 666666666655543
No 339
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=63.19 E-value=17 Score=23.39 Aligned_cols=20 Identities=10% Similarity=0.011 Sum_probs=8.4
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 006981 170 DGCAKAGQVAKAFGAYGIMR 189 (623)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~ 189 (623)
.+|...|+.+.|.+++++..
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 34444444444444444443
No 340
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=63.09 E-value=19 Score=21.09 Aligned_cols=27 Identities=7% Similarity=-0.013 Sum_probs=13.8
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHH
Q 006981 376 TMNALITALCDGDQLPKTMEVLSDMKS 402 (623)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (623)
+|..+...|.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444555555555555555555443
No 341
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.01 E-value=1.1e+02 Score=27.27 Aligned_cols=19 Identities=21% Similarity=0.116 Sum_probs=9.5
Q ss_pred HHHccCCHHHHHHHHHHHh
Q 006981 206 ACGQSGAVDRAFDVLAEMN 224 (623)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m~ 224 (623)
.+...+++++|..-++...
T Consensus 98 ~~ve~~~~d~A~aqL~~~l 116 (207)
T COG2976 98 AEVEANNLDKAEAQLKQAL 116 (207)
T ss_pred HHHhhccHHHHHHHHHHHH
Confidence 3444555555555555443
No 342
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=62.96 E-value=39 Score=27.87 Aligned_cols=59 Identities=10% Similarity=0.169 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhh
Q 006981 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86 (623)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 86 (623)
...+..|-.+++.-+ ++.++|..|...|+....+.++...+..+...|++++|.++|..
T Consensus 66 ~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 66 ERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 345555555554333 77777777777776555555555555556666666666666543
No 343
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=62.88 E-value=1.6e+02 Score=29.08 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (623)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (623)
..+|..+...+.+.|+++.|...+..+...+..+ +....-.-....-..|+..+|...++...+
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567777777777788887777777776643111 112222233444556777777777776665
No 344
>PHA02875 ankyrin repeat protein; Provisional
Probab=62.80 E-value=1.9e+02 Score=29.67 Aligned_cols=12 Identities=17% Similarity=0.205 Sum_probs=5.3
Q ss_pred HHhcCCHHHHHH
Q 006981 172 CAKAGQVAKAFG 183 (623)
Q Consensus 172 ~~~~g~~~~A~~ 183 (623)
.++.|+.+.+..
T Consensus 75 A~~~g~~~~v~~ 86 (413)
T PHA02875 75 AVEEGDVKAVEE 86 (413)
T ss_pred HHHCCCHHHHHH
Confidence 344455444333
No 345
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=62.44 E-value=98 Score=29.36 Aligned_cols=87 Identities=6% Similarity=-0.045 Sum_probs=36.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----
Q 006981 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC----- 385 (623)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~----- 385 (623)
|.+++..+++.+++...-+-.+..-+....+.-.-|-.|.|.|....+.++-..-.+..-..+...|.+++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 344444555544443333222221111222333333345555555555555444443222223333444444333
Q ss_pred cCCChhhHHHHH
Q 006981 386 DGDQLPKTMEVL 397 (623)
Q Consensus 386 ~~g~~~~A~~l~ 397 (623)
=.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 245555555554
No 346
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=61.75 E-value=51 Score=32.02 Aligned_cols=88 Identities=13% Similarity=-0.012 Sum_probs=55.6
Q ss_pred HhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 006981 71 CKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147 (623)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 147 (623)
+.++|.+++|+..|.... +.|.+++..-..+|.+..++..|..-.......+ ..-...|..-+.+-...|...+|.
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~EAK 185 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNMEAK 185 (536)
T ss_pred hhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 445677777777776542 3377777777777777777777766665555432 112334555555555567788888
Q ss_pred HHHHHHHHCCCCCC
Q 006981 148 EVFHEMVNAGIEPN 161 (623)
Q Consensus 148 ~~~~~m~~~g~~~~ 161 (623)
+-++...+. +|+
T Consensus 186 kD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 186 KDCETVLAL--EPK 197 (536)
T ss_pred HhHHHHHhh--Ccc
Confidence 888777765 555
No 347
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=61.25 E-value=78 Score=24.83 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (623)
Q Consensus 287 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (623)
+..+-+..+...++.|+.....+.+.+|.+.+++..|.++|+-++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344444444445555555555555555555555555555555443
No 348
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.13 E-value=2.9e+02 Score=31.33 Aligned_cols=117 Identities=14% Similarity=0.152 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCC-CHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCCCCHHHHH--
Q 006981 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAG--IEP-NVHTYGALIDGCAKAGQV--AKAFGAYGIMRSKNVKPDRVVFN-- 201 (623)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~-~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~~~~-- 201 (623)
-|..|+..|...|+.++|+++|.+..... ..+ -...+-.++.-+.+.+.. +-.++.-+...+....-....++
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 37778888888888888888888877621 011 112233344444444433 33333333332221000000010
Q ss_pred ----------HHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc
Q 006981 202 ----------ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (623)
Q Consensus 202 ----------~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~ 247 (623)
.-+-.|......+-+...++.+.... -.++..-.+.++..|+..
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~--~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDN--RLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhc--cccchHHHHHHHHHHHHH
Confidence 12234666777888888888887642 234566677777777653
No 349
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=60.86 E-value=14 Score=20.47 Aligned_cols=17 Identities=18% Similarity=-0.021 Sum_probs=7.2
Q ss_pred HHHHHhcCCHHHHHHHH
Q 006981 346 MGACSNAKNWQKALELY 362 (623)
Q Consensus 346 i~~~~~~g~~~~A~~~~ 362 (623)
...+...|++++|..++
T Consensus 8 a~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 8 ARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 33444444444444433
No 350
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=60.51 E-value=20 Score=23.07 Aligned_cols=23 Identities=30% Similarity=0.200 Sum_probs=12.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 006981 415 LLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 415 ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
+..+|...|+.+.|+.++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555553
No 351
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=59.43 E-value=27 Score=20.33 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 165 YGALIDGCAKAGQVAKAFGAYGIMR 189 (623)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~ 189 (623)
|..+...|...|++++|...|++..
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444455555555555555555443
No 352
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=58.04 E-value=1.2e+02 Score=27.25 Aligned_cols=56 Identities=13% Similarity=0.055 Sum_probs=27.4
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
.++.+.+.++.|+.-..+..+.+ +........-..+|.+..++++|+.=|+++++.
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 34455555555555555555544 111111122233455556666666666666654
No 353
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=58.00 E-value=52 Score=25.18 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=27.8
Q ss_pred CccCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006981 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGL 56 (623)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~ 56 (623)
..|.++.........++..|++++|++.+-++.+.+.
T Consensus 17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 3577777777778888899999999999998887764
No 354
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=57.84 E-value=1.8e+02 Score=30.08 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=24.6
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 006981 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (623)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 143 (623)
++.++..+++++.+...|.....+.+|.-...|.+.|..
T Consensus 30 ~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~t 68 (696)
T KOG2471|consen 30 NSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCT 68 (696)
T ss_pred CcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccc
Confidence 456666777777776666555555666666666666543
No 355
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=57.19 E-value=77 Score=24.02 Aligned_cols=14 Identities=29% Similarity=0.363 Sum_probs=6.6
Q ss_pred CCHHHHHHHHHHHH
Q 006981 318 GKVEAAFEILQEAK 331 (623)
Q Consensus 318 g~~~~a~~~~~~~~ 331 (623)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444444
No 356
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.02 E-value=1.6e+02 Score=27.18 Aligned_cols=91 Identities=18% Similarity=0.169 Sum_probs=47.8
Q ss_pred HcCCChhhHHHHHHHHHHCCCCCCHHHHHH---HH-HHHHhc--CCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 006981 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSI---LL-VACERK--DDVEVGLMLLSQAKEDGVIPN---LVMFKCIIGMCS 455 (623)
Q Consensus 385 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~---ll-~a~~~~--g~~~~a~~~~~~~~~~g~~p~---~~~~~~li~~~~ 455 (623)
+..+++.+|+++|++.....+..+..-|+. ++ .++|+. .+.-.+...+++-.+ ..|+ ..-+.-|-+++.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~--~dP~F~dsREckflk~L~~ 242 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE--LDPAFTDSRECKFLKDLLD 242 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh--cCCcccccHHHHHHHHHHH
Confidence 457889999999999877655444333332 11 122232 454455555555554 3443 334444444332
Q ss_pred h-cHHHHHHhhHhhhhccCCCcc
Q 006981 456 R-RYEKARTLNEHVLSFNSGRPQ 477 (623)
Q Consensus 456 ~-~~~~a~~~~~~~~~~~~~~~~ 477 (623)
- .-.+...+.+.+..|++.++-
T Consensus 243 aieE~d~e~fte~vkefDsisrL 265 (288)
T KOG1586|consen 243 AIEEQDIEKFTEVVKEFDSISRL 265 (288)
T ss_pred HHhhhhHHHHHHHHHhhhccchH
Confidence 2 122344455666666666554
No 357
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=55.40 E-value=2e+02 Score=27.71 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhcCCHHHHH
Q 006981 306 FLSALIDFAGHAGKVEAAF 324 (623)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~ 324 (623)
+|.-|+.+++..|+.+..+
T Consensus 323 ~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred hhhHHHHHHhcCChHHHHH
Confidence 4566666666666655443
No 358
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=55.26 E-value=60 Score=21.94 Aligned_cols=36 Identities=8% Similarity=0.044 Sum_probs=21.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (623)
Q Consensus 416 l~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 453 (623)
.-++.+.|++++|.+..+.+++ ++|+..-...|-.+
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHH
Confidence 3456677777777777777766 46666555555443
No 359
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=55.17 E-value=1.5e+02 Score=26.17 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006981 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440 (623)
Q Consensus 390 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~ 440 (623)
+++|.+.|++... ..|+..+|..-+..+. +|-+++.++.+.+.
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHHh
Confidence 3444444444444 2566666666555532 34445555555443
No 360
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=54.51 E-value=13 Score=30.57 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=22.3
Q ss_pred cCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (623)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 419 (623)
..|.-.+|..+|++|++.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 346667788888888888877774 66666544
No 361
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=51.09 E-value=1.9e+02 Score=26.09 Aligned_cols=88 Identities=14% Similarity=0.091 Sum_probs=44.4
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006981 102 CASSKDSEGAFQVLRLVQEAGLKAD-----CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (623)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (623)
+..+|++++|..-|...+..- ++. .+.|..-..++.+.+.++.|+.--.+.++.+ +........-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhh
Confidence 455666666666666666542 221 1233333445555666666665555555443 111222222233555556
Q ss_pred CHHHHHHHHHHHHhC
Q 006981 177 QVAKAFGAYGIMRSK 191 (623)
Q Consensus 177 ~~~~A~~~~~~m~~~ 191 (623)
.+++|+.-|.++.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 666666666666554
No 362
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=50.02 E-value=2.6e+02 Score=27.49 Aligned_cols=60 Identities=7% Similarity=0.047 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006981 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206 (623)
Q Consensus 145 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 206 (623)
.-+.++++..+.. +.+...+..++..+.+..+.++..+.++++.... +-+...|...|..
T Consensus 49 ~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 49 RKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDF 108 (321)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHH
Confidence 3344555544442 3344555555555555556666666666665542 1234445544443
No 363
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=49.68 E-value=2e+02 Score=25.96 Aligned_cols=73 Identities=8% Similarity=0.002 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHccCCHHHHH
Q 006981 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK---NVKPDRVVFNALITACGQSGAVDRAF 217 (623)
Q Consensus 144 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~ 217 (623)
+.|.+.|-.+...+.--++.....|...|. ..+.++++.++.+..+. +-.+|+..+.+|.+.+.+.|+.+.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 667777777776665555666666666555 46677777777666542 33567777777777777777777663
No 364
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=49.00 E-value=64 Score=21.18 Aligned_cols=27 Identities=7% Similarity=0.107 Sum_probs=11.0
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHH
Q 006981 388 DQLPKTMEVLSDMKSLGLCPNTITYSI 414 (623)
Q Consensus 388 g~~~~A~~l~~~m~~~g~~p~~~t~~~ 414 (623)
|-.+++..++++|.+.|+.-+...|..
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~~~ 42 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLIEE 42 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHHHH
Confidence 333344444444444444444433333
No 365
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.58 E-value=2.4e+02 Score=26.61 Aligned_cols=43 Identities=14% Similarity=0.221 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006981 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450 (623)
Q Consensus 406 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 450 (623)
.|.....+.++.+|.. .+..+-.++++.- ...+-.|+.+-..+
T Consensus 301 dPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~-~~~IM~DpFIReh~ 343 (440)
T KOG1464|consen 301 DPEILAMTNLVAAYQN-NDIIEFERILKSN-RSNIMDDPFIREHI 343 (440)
T ss_pred CHHHHHHHHHHHHHhc-ccHHHHHHHHHhh-hccccccHHHHHHH
Confidence 3556667777777643 3444333333222 12344455444433
No 366
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=48.49 E-value=68 Score=23.78 Aligned_cols=45 Identities=16% Similarity=0.091 Sum_probs=20.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHH
Q 006981 281 QTGDWEFACSVYDDMTKKGVIPDE--VFLSALIDFAGHAGKVEAAFE 325 (623)
Q Consensus 281 ~~g~~~~A~~l~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~ 325 (623)
...+.++|+..|...++.-..|.. .++..++.+++..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555443222111 234445555555555544443
No 367
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=47.42 E-value=87 Score=21.17 Aligned_cols=35 Identities=11% Similarity=0.049 Sum_probs=19.6
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416 (623)
Q Consensus 380 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 416 (623)
+.-++.+.|++++|.+..+.+++ +.|+..-...|-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHH
Confidence 34456667777777777777666 356554444433
No 368
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=47.38 E-value=2.7e+02 Score=26.78 Aligned_cols=57 Identities=12% Similarity=0.119 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHH
Q 006981 232 PDHITIGALMKACANAGQVDRAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWEFA 288 (623)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A 288 (623)
++..+...++..+++.+++..-.++++..... +...|...|..+|....+.|+..-.
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~ 257 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVM 257 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHH
Confidence 34444444555555555555555555444333 2233444455555555555554433
No 369
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=47.22 E-value=1.4e+02 Score=23.66 Aligned_cols=80 Identities=15% Similarity=0.098 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 006981 39 GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLV 118 (623)
Q Consensus 39 g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 118 (623)
.+.+||-.+.+.+...+. ....+...-+....++|++.+|+..=.....||...|-+|-. .+.|-.+++..-+.++
T Consensus 20 HcH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 356777777777776663 122222222223344566666633333444566666555432 3445555555555544
Q ss_pred HHcC
Q 006981 119 QEAG 122 (623)
Q Consensus 119 ~~~g 122 (623)
...|
T Consensus 96 a~~g 99 (116)
T PF09477_consen 96 ASSG 99 (116)
T ss_dssp CT-S
T ss_pred HhCC
Confidence 4433
No 370
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=46.81 E-value=98 Score=23.48 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=28.5
Q ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChH
Q 006981 44 CIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSE 109 (623)
Q Consensus 44 A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 109 (623)
+.++++.+.++|+++.+ + ...+-..-.+.|+.+.|.++...++ ...-.|..++.++...|.-.
T Consensus 21 ~~~v~d~ll~~~ilT~~-d-~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 21 TRDVCDKCLEQGLLTEE-D-RNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHE 83 (88)
T ss_pred HHHHHHHHHhcCCCCHH-H-HHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchh
Confidence 34556666666654222 1 1111111113344555555555555 44445555555555554433
No 371
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=46.69 E-value=81 Score=20.72 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=31.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (623)
Q Consensus 416 l~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 453 (623)
+....+.|...++..++++|.+.|+.-+...+..++..
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 33456788889999999999999999999888877653
No 372
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=46.51 E-value=24 Score=29.15 Aligned_cols=31 Identities=26% Similarity=0.524 Sum_probs=20.9
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (623)
Q Consensus 139 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (623)
+.|.-..|-.+|.+|++.|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 445556677788888877777664 6666654
No 373
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=46.12 E-value=1.5e+02 Score=32.12 Aligned_cols=32 Identities=19% Similarity=0.064 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (623)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 348 (623)
.|+..+|.+.+-.+.+.++.|...-..-|.++
T Consensus 508 ~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 508 EGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp --------------------------------
T ss_pred hhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 46777777777777777666665544444443
No 374
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=45.47 E-value=1.6e+02 Score=24.28 Aligned_cols=47 Identities=13% Similarity=0.215 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (623)
Q Consensus 287 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (623)
+..+-+..+...++.|+.......+.+|-+.+++..|.++|+-++.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44455555566666777777777777777777777777777666543
No 375
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=45.28 E-value=2.9e+02 Score=28.60 Aligned_cols=116 Identities=16% Similarity=0.087 Sum_probs=64.8
Q ss_pred HhcCCHHHHHHHHHHHHH---CCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCC------
Q 006981 315 GHAGKVEAAFEILQEAKN---QGISVG-----IISYSSLMGACSNAKNWQKALELYEHMKS-------IKLKPT------ 373 (623)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~---~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~~~------ 373 (623)
.-.|++.+|.+++...-- .|...+ -..+|.|...+.+.|.+..+..+|....+ .|++|.
T Consensus 251 Y~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls 330 (696)
T KOG2471|consen 251 YAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLS 330 (696)
T ss_pred HHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehh
Confidence 345677777766654311 121111 11234444444555555555555544432 343332
Q ss_pred -----HHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHH
Q 006981 374 -----VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER---KDDVEVGLMLL 432 (623)
Q Consensus 374 -----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~---~g~~~~a~~~~ 432 (623)
..+||.= -.|...|++-.|.+.|.+.... +..++..|..+..+|.- .|..++.....
T Consensus 331 ~nks~eilYNcG-~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima~~~~l~ee~~~s~ 395 (696)
T KOG2471|consen 331 QNKSMEILYNCG-LLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMALQKGLLEEGNSSL 395 (696)
T ss_pred cccchhhHHhhh-HHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHhhhhhhhhccCCc
Confidence 2334432 3466789999999999888764 56788999999988854 34444444333
No 376
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=43.40 E-value=87 Score=23.26 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHcCChhHHH
Q 006981 129 LYTTLITTCAKSGKVDAMF 147 (623)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~ 147 (623)
++..|+.+|+..|++.+++
T Consensus 45 ~lG~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 45 VLGYLIQAHMEWGKYREML 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555544443
No 377
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=43.16 E-value=1.2e+02 Score=27.04 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 405 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
..|+..+|..++.++...|+.++|.+...++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 468888888888888888888888888888776
No 378
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=42.90 E-value=5.9e+02 Score=29.48 Aligned_cols=255 Identities=13% Similarity=0.017 Sum_probs=150.0
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 006981 82 RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN 161 (623)
Q Consensus 82 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 161 (623)
.+...+.++|...-...+..+.+.+.. .+...+..+.+ .+|...-...+.++.+.+........+..+.. .+|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCC
Confidence 344445578888888888888877754 45555555553 34555555666666655432222233434443 356
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHH
Q 006981 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241 (623)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll 241 (623)
..+-...+.++...+..+ ...+.. +.. .+|...=...+.++.+.+..+. + ..... .++..+-...+
T Consensus 698 ~~VR~~A~~aL~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~~---l-~~~l~-----D~~~~VR~~aa 763 (897)
T PRK13800 698 PVVRAAALDVLRALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVES---V-AGAAT-----DENREVRIAVA 763 (897)
T ss_pred HHHHHHHHHHHHhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcHH---H-HHHhc-----CCCHHHHHHHH
Confidence 666666667666544221 222233 332 3466555666777777655432 2 22222 45666767777
Q ss_pred HHHHHcCChHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006981 242 KACANAGQVDR-AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320 (623)
Q Consensus 242 ~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 320 (623)
.++...+..+. +...+..+.+ .++..+-.+.+.++.+.|....+...+..+... +|...-...+.++...+.
T Consensus 764 ~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~- 836 (897)
T PRK13800 764 KGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAA- 836 (897)
T ss_pred HHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhccc-
Confidence 77777776443 3344444443 345788888999999988876655555555543 355566667777777765
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (623)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (623)
+++...+..+.+ .++..+-...+.++.+.+....+...+....+
T Consensus 837 ~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 837 DVAVPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred cchHHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 445566555554 35677777888888876434556666666655
No 379
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=42.62 E-value=3.5e+02 Score=26.73 Aligned_cols=65 Identities=11% Similarity=0.104 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 006981 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP---TVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (623)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (623)
...++..+...+.+.|.++.|...+.++.+.+... .....-.-...+-..|+..+|+..+++...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45567777888888888888888888877543111 223333445566667888888888877765
No 380
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=42.34 E-value=1.4e+02 Score=23.81 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 271 VYTIAINCCSQTGDWEFACSVYDDMTK 297 (623)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (623)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477788888888888888888887766
No 381
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=42.27 E-value=1.8e+02 Score=25.81 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=11.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 006981 347 GACSNAKNWQKALELYEHMKS 367 (623)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~~ 367 (623)
..|.+.|.+++|.+++++..+
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 345555555555555555543
No 382
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=42.18 E-value=3.4e+02 Score=27.69 Aligned_cols=62 Identities=13% Similarity=0.064 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH--CC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 129 LYTTLITTCAKSGKVDAMFEVFHEMVN--AG-----IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (623)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~--~g-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 190 (623)
+...|++.++-.|++..|+++++.+.- .+ ..-.+.++-.+.-+|...+++.+|.++|.....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777665421 11 123455677777788888888888888887754
No 383
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=41.39 E-value=73 Score=22.33 Aligned_cols=22 Identities=18% Similarity=0.147 Sum_probs=9.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 006981 167 ALIDGCAKAGQVAKAFGAYGIM 188 (623)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m 188 (623)
.+|.+|...|++++|.+..+++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444444444444444443
No 384
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.50 E-value=63 Score=31.03 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=20.9
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC
Q 006981 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125 (623)
Q Consensus 94 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~ 125 (623)
-||..|....+.||+++|++++++..+.|+.-
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 35566666667777777777777776666543
No 385
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=39.91 E-value=63 Score=17.41 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 165 YGALIDGCAKAGQVAKAFGAYGIMR 189 (623)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~ 189 (623)
|..+...+...++++.|...|+...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444444455555554444443
No 386
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=39.82 E-value=72 Score=22.34 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=10.7
Q ss_pred HHHHHHHcCCChhhHHHHHHHHH
Q 006981 379 ALITALCDGDQLPKTMEVLSDMK 401 (623)
Q Consensus 379 ~li~~~~~~g~~~~A~~l~~~m~ 401 (623)
.+|.+|.+.|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445555555555555444443
No 387
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=39.76 E-value=90 Score=25.68 Aligned_cols=22 Identities=9% Similarity=0.102 Sum_probs=10.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHH
Q 006981 95 FNMLMSVCASSKDSEGAFQVLR 116 (623)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~ 116 (623)
|......+-..|++.+|.++|+
T Consensus 102 Ye~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 102 YEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444445555555555543
No 388
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=39.48 E-value=4.2e+02 Score=26.85 Aligned_cols=63 Identities=16% Similarity=0.030 Sum_probs=38.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 006981 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261 (623)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 261 (623)
+.-.|++...-.|+.....+.++.|..+-.+..|...+---+.-+|.-.+++.+|.+.|-.+.
T Consensus 237 sL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 237 SLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777887777777777766544444442222334455666677788887776553
No 389
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=39.03 E-value=3.5e+02 Score=25.70 Aligned_cols=82 Identities=18% Similarity=0.206 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006981 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (623)
Q Consensus 125 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 204 (623)
.|+.....+...|.+.|++.+|...|-.-. .++...+..++..+...|...++ |...-..++
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~----~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL 149 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGT----DPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL 149 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcC----ChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH
Confidence 367778888888888888888877663221 23333333344444444443333 222222222
Q ss_pred HHHHccCCHHHHHHHHHHHhh
Q 006981 205 TACGQSGAVDRAFDVLAEMNA 225 (623)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~ 225 (623)
.|.-.++...|...+....+
T Consensus 150 -~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 150 -QYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp -HHHHTTBHHHHHHHHHHHHH
T ss_pred -HHHHhcCHHHHHHHHHHHHH
Confidence 24445667777766655543
No 390
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=38.88 E-value=6.2e+02 Score=28.58 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=24.2
Q ss_pred cCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006981 175 AGQVAKAFGAYGIMRSK----NVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (623)
Q Consensus 175 ~g~~~~A~~~~~~m~~~----g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (623)
.|++++|.++-+..... -..+..+.+..+..+..-.|++++|..+..+.
T Consensus 471 ~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a 523 (894)
T COG2909 471 RGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQA 523 (894)
T ss_pred cCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHH
Confidence 45556655555544332 12223344444555555556666665555443
No 391
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=38.43 E-value=1.3e+02 Score=24.06 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=20.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006981 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (623)
Q Consensus 133 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 168 (623)
+++.+.+|...++|+++.+-|.++| +.+...-+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eL 101 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKEL 101 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4555566666666666666666666 4444443333
No 392
>PHA02875 ankyrin repeat protein; Provisional
Probab=37.62 E-value=4.6e+02 Score=26.73 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=16.7
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHH
Q 006981 138 AKSGKVDAMFEVFHEMVNAGIEPNVHT--YGALIDGCAKAGQVA 179 (623)
Q Consensus 138 ~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~ 179 (623)
++.|+.+.+ +.+.+.|..|+... ..+.+...++.|+.+
T Consensus 10 ~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~ 49 (413)
T PHA02875 10 ILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSE 49 (413)
T ss_pred HHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHH
Confidence 445554433 33334555554322 223344445555544
No 393
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=37.61 E-value=2.2e+02 Score=30.19 Aligned_cols=132 Identities=20% Similarity=0.160 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (623)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (623)
+-|-.+|..|.... .|-..+.|...-...-.|+...|...+.........-..+....+.....+.|..-.|..++.+.
T Consensus 590 e~~~~~~~~~~~~~-~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~ 668 (886)
T KOG4507|consen 590 EIGSFLFHAINKPN-APIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQA 668 (886)
T ss_pred HHHHHHHHHhcCCC-CCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHH
Confidence 33444555554332 23222223222233345666666666655443222112233344445555566666676666665
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006981 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (623)
Q Consensus 331 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (623)
.... ...+.++..+.++|.-..++++|++.|++..+.. ..+.+.-+.|...-|
T Consensus 669 l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 669 LAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred Hhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 5544 3345566677777777778888888777766543 234455555544333
No 394
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=37.58 E-value=4e+02 Score=25.98 Aligned_cols=46 Identities=9% Similarity=-0.010 Sum_probs=32.3
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhH
Q 006981 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK 75 (623)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~ 75 (623)
.+..|..+..++++.+.++-+++....+ +.-...|.+....+.+.|
T Consensus 102 ~~~~~~~~~~~~~~~~Ll~~~E~sl~~~--pfWLDgq~~~~qal~~lG 147 (301)
T TIGR03362 102 RVADYQELLAQADWAALLQRVEQSLSLA--PFWLDGQRLSAQALERLG 147 (301)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHHCC
Confidence 4445778888888888888888887775 445555666666666655
No 395
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=37.21 E-value=2.5e+02 Score=24.96 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=15.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 006981 311 IDFAGHAGKVEAAFEILQEAKN 332 (623)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~~~ 332 (623)
+..|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3456777777777777776655
No 396
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=37.15 E-value=2.8e+02 Score=29.97 Aligned_cols=91 Identities=19% Similarity=0.208 Sum_probs=60.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCCHH------HHHHHHHHHhhCCCCCCCCHHHHH
Q 006981 167 ALIDGCAKAGQVAKAFGAYGIMRSK--NVKPDRVVFNALITACGQSGAVD------RAFDVLAEMNAEVHPVDPDHITIG 238 (623)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~~~~~~~~~~~~~ 238 (623)
+|+.+|..+|++-.+.++++..... |-+.=...+|..|+...+.|.++ .|.+++++.. +.-|..||.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~-----ln~d~~t~a 107 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR-----LNGDSLTYA 107 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh-----cCCcchHHH
Confidence 8899999999999999999988754 33334567888888888888754 3444444433 466778888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHh
Q 006981 239 ALMKACANAGQVDRAREVYKMIHK 262 (623)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~ 262 (623)
.|+.+-..--+-....-++.+...
T Consensus 108 ll~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 108 LLCQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHHHhhcChHhHHhccHHHHHHHH
Confidence 777655443333333444444443
No 397
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=37.13 E-value=1.2e+02 Score=32.01 Aligned_cols=85 Identities=12% Similarity=0.005 Sum_probs=39.4
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 006981 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219 (623)
Q Consensus 140 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 219 (623)
.|+...|...+............+..-.|.+...+.|....|-.++.+..... ...+.++..+.+++.-..+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 34555555444433322111112223334444444555555555555444432 22344555555556556666666666
Q ss_pred HHHHhh
Q 006981 220 LAEMNA 225 (623)
Q Consensus 220 ~~~m~~ 225 (623)
|.+..+
T Consensus 699 ~~~a~~ 704 (886)
T KOG4507|consen 699 FRQALK 704 (886)
T ss_pred HHHHHh
Confidence 655554
No 398
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=36.02 E-value=3e+02 Score=29.73 Aligned_cols=75 Identities=15% Similarity=0.147 Sum_probs=49.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 006981 309 ALIDFAGHAGKVEAAFEILQEAKNQ--GISVGIISYSSLMGACSNAKNWQ------KALELYEHMKSIKLKPTVSTMNAL 380 (623)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~~~~~~~~~~~~l 380 (623)
+++.+|...|++..+.++++..... |-+.-...+|..|+...+.|.++ .|.+.+++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7888888888888888888887665 33333556777777777877643 3344444333 45567777766
Q ss_pred HHHHHc
Q 006981 381 ITALCD 386 (623)
Q Consensus 381 i~~~~~ 386 (623)
+++-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665443
No 399
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=35.70 E-value=2.4e+02 Score=23.92 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=17.9
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 006981 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (623)
Q Consensus 117 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 157 (623)
.+.+.|++++.. -..+++.+.+.++.-.|.++|+++.+.+
T Consensus 11 ~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~ 50 (145)
T COG0735 11 RLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEG 50 (145)
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhC
Confidence 334444444332 2234444444444455555555555544
No 400
>PRK14700 recombination factor protein RarA; Provisional
Probab=34.86 E-value=4.3e+02 Score=25.63 Aligned_cols=36 Identities=22% Similarity=0.055 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006981 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (623)
Q Consensus 283 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (623)
.+++.|+-.+-+|++.|..|....-..++-++...|
T Consensus 140 SDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIG 175 (300)
T PRK14700 140 TDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIG 175 (300)
T ss_pred CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 345555555555555555554444444444444433
No 401
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=34.55 E-value=71 Score=30.68 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHH
Q 006981 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412 (623)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 412 (623)
|+..|..-.+.|++++|+.++++..+.|+.--..||
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 456666666666666666666666666654333333
No 402
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=34.37 E-value=1.9e+02 Score=25.77 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=12.8
Q ss_pred CCHHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 006981 372 PTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (623)
Q Consensus 372 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (623)
|+...|..++..+...|+.++|.+..+++.
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 403
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=32.66 E-value=5.7e+02 Score=26.30 Aligned_cols=78 Identities=12% Similarity=0.074 Sum_probs=58.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006981 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (623)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (623)
...|+.-|...|+..+|....+++.-- +--...++-+++.+..+.|+-..-+.+++..-.. ...|-+.|-.+|.+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s----glIT~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS----GLITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CceeHHHhhhhhhh
Confidence 457888899999999999877765321 1124568889999999999988888888888754 45677888888876
Q ss_pred CCC
Q 006981 387 GDQ 389 (623)
Q Consensus 387 ~g~ 389 (623)
-.+
T Consensus 587 V~d 589 (645)
T KOG0403|consen 587 VYD 589 (645)
T ss_pred hhc
Confidence 543
No 404
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=32.43 E-value=2.8e+02 Score=22.76 Aligned_cols=43 Identities=12% Similarity=0.283 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHH
Q 006981 110 GAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHE 152 (623)
Q Consensus 110 ~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~ 152 (623)
.+.++|..|...|+... ..-|..-...+...|++++|.++|..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666666555433 34455555566666666666666543
No 405
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=32.33 E-value=86 Score=22.28 Aligned_cols=47 Identities=13% Similarity=0.170 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006981 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (623)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (623)
...++.++..+++-.-.++++..+.+..+.|. .+..+|.--++.+++
T Consensus 8 ~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 8 DPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 33444555555555555555555555555442 334444444444433
No 406
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.18 E-value=7.8e+02 Score=27.79 Aligned_cols=78 Identities=8% Similarity=0.109 Sum_probs=43.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCC
Q 006981 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (623)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 107 (623)
-...|+.+++.|+++.|+++-..-++ .-.++...-+..+-+.+++..|.+.+.++. ..|..+.--+....+
T Consensus 361 ~R~vWk~yLd~g~y~kAL~~ar~~p~-----~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~----~~FEEVaLKFl~~~~ 431 (911)
T KOG2034|consen 361 ARDVWKTYLDKGEFDKALEIARTRPD-----ALETVLLKQADFLFQDKEYLRAAEIYAETL----SSFEEVALKFLEINQ 431 (911)
T ss_pred hHHHHHHHHhcchHHHHHHhccCCHH-----HHHHHHHHHHHHHHhhhHHHHHHHHHHHhh----hhHHHHHHHHHhcCC
Confidence 44579999999999999887543211 011122222334555667777777777663 334444444444444
Q ss_pred hHHHHHHH
Q 006981 108 SEGAFQVL 115 (623)
Q Consensus 108 ~~~A~~~~ 115 (623)
.+ ++..|
T Consensus 432 ~~-~L~~~ 438 (911)
T KOG2034|consen 432 ER-ALRTF 438 (911)
T ss_pred HH-HHHHH
Confidence 44 44444
No 407
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=32.11 E-value=5.8e+02 Score=26.24 Aligned_cols=75 Identities=13% Similarity=0.223 Sum_probs=51.0
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006981 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (623)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 456 (623)
...|+.-|...|...+|.+.++++--- +.--.+.+.+++.+.-+.|+-..-+.+++..-+.|+ .|-+.|-..|.|
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhh
Confidence 356778888899999999888876321 122466788888888888887777777777766553 344455555444
No 408
>PF02757 YLP: YLP motif; InterPro: IPR004019 The YLP motif is found in one or several copies in various Drosophila proteins. Its function is unknown, however the presence of completely conserved tyrosine residues and its presence in the human Erbb-2 and ErbB-4 receptor protein-tyrosine kinases (2.7.10.1 from EC) may suggest it could be a substrate for tyrosine kinases. ErbBs (1-4) are single-pass transmembrane proteins that activate a wide variety of signalling pathways, including those involved in proliferation, migration, differentiation, survival, and apoptosis; they are frequently misregulated in cancer []. ErbB-2 is an essential component of a neuregulin-receptor complex, although neuregulins do not interact with it alone. ErbB-4 specifically binds and is activated by neuregulins, NRG-2, NRG-3, heparin-binding EGF-like growth factor, betacellulin and NTAK [].
Probab=31.84 E-value=22 Score=14.42 Aligned_cols=6 Identities=67% Similarity=1.215 Sum_probs=4.2
Q ss_pred cccccC
Q 006981 617 SDVYLP 622 (623)
Q Consensus 617 ~~~~~~ 622 (623)
||-|||
T Consensus 1 s~eYLp 6 (9)
T PF02757_consen 1 SNEYLP 6 (9)
T ss_pred CccccC
Confidence 567877
No 409
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.83 E-value=8.2e+02 Score=27.93 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=34.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCchH-H---HHHH-HHHHhhhHHHHHHHHHhhhCC
Q 006981 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKV-Y---HARF-FNVCKSQKAIKEAFRFFKLVP 88 (623)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~-~---~~~l-~~~~~~~~~~~~A~~~~~~~~ 88 (623)
...|++..++++|..+-+.....+ |.... + +... +-....++++++|.+.|.++.
T Consensus 314 i~~lL~~k~fe~ai~L~e~~~~~~--p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~ 373 (877)
T KOG2063|consen 314 IQDLLQEKSFEEAISLAEILDSPN--PKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSE 373 (877)
T ss_pred HHHHHHhhhHHHHHHHHhccCCCC--hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 445678888999999888776554 22211 1 1111 112345688999999998775
No 410
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=31.57 E-value=4.9e+02 Score=25.24 Aligned_cols=71 Identities=17% Similarity=0.246 Sum_probs=39.2
Q ss_pred HHhcCCHHHHHHHHH-HHHhCCCCCCH----HHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006981 279 CSQTGDWEFACSVYD-DMTKKGVIPDE----VFLSALIDFAGHAGKVE-AAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (623)
Q Consensus 279 ~~~~g~~~~A~~l~~-~m~~~~~~p~~----~~~~~li~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 352 (623)
..+...+++.....+ +|.+.++ |+. ..|+.++++-.-+.+-+ -|.+.++. ..+|..|+.+++..
T Consensus 265 ~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrh---------lK~yaPLL~af~s~ 334 (412)
T KOG2297|consen 265 VSEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRH---------LKQYAPLLAAFCSQ 334 (412)
T ss_pred hccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HHhhhHHHHHHhcC
Confidence 334445556555554 4555443 554 45777776543332111 12222222 45788899999999
Q ss_pred CCHHHHH
Q 006981 353 KNWQKAL 359 (623)
Q Consensus 353 g~~~~A~ 359 (623)
|+.+-.+
T Consensus 335 g~sEL~L 341 (412)
T KOG2297|consen 335 GQSELEL 341 (412)
T ss_pred ChHHHHH
Confidence 9877654
No 411
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=31.31 E-value=2.4e+02 Score=21.58 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=11.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHH
Q 006981 133 LITTCAKSGKVDAMFEVFHEMV 154 (623)
Q Consensus 133 li~~~~~~g~~~~A~~~~~~m~ 154 (623)
+...+...|+.++|.+.+++.+
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3344445566666666555554
No 412
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.28 E-value=5.7e+02 Score=25.94 Aligned_cols=63 Identities=11% Similarity=0.079 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAG--IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (623)
Q Consensus 128 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 190 (623)
..+.-+.+.|..+|+++.|++.|.+....- .......|-.+|..-.-.|+|........+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 356778888888999999999888855421 122334455566666667777776666665554
No 413
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=31.23 E-value=5.6e+02 Score=25.77 Aligned_cols=65 Identities=12% Similarity=0.024 Sum_probs=42.1
Q ss_pred CHHHHHHH---HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCChhHHHHHHHHHHH
Q 006981 91 TLSTFNML---MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA-KSGKVDAMFEVFHEMVN 155 (623)
Q Consensus 91 ~~~~~~~l---i~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~ 155 (623)
|...|-++ |..+.+.|.+..|+++.+.+...+..-|+..-...|+.|+ +.++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44444444 3457777888888888888877764446666666776664 55666666666666543
No 414
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=31.21 E-value=4.4e+02 Score=24.55 Aligned_cols=39 Identities=13% Similarity=0.195 Sum_probs=19.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (623)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (623)
++.+-....+++.+..-..+++ +...|+..+|+.-++.-
T Consensus 180 Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst 218 (333)
T KOG0991|consen 180 RLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQST 218 (333)
T ss_pred HHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHH
Confidence 3333334444444444444443 45566766666655543
No 415
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=30.86 E-value=5.2e+02 Score=25.30 Aligned_cols=153 Identities=9% Similarity=0.061 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 006981 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116 (623)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 116 (623)
+..+..+-++.-.+..+-+ +.-.....++..--... +.+|.++|++....-..+|+ ++.+.+.--...+
T Consensus 196 RERnp~~RI~~A~~ALeIN--~eCA~AyvLLAEEEa~T--i~~AE~l~k~ALka~e~~yr-------~sqq~qh~~~~~d 264 (556)
T KOG3807|consen 196 RERNPPARIKAAYQALEIN--NECATAYVLLAEEEATT--IVDAERLFKQALKAGETIYR-------QSQQCQHQSPQHE 264 (556)
T ss_pred HhcCcHHHHHHHHHHHhcC--chhhhHHHhhhhhhhhh--HHHHHHHHHHHHHHHHHHHh-------hHHHHhhhccchh
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006981 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG---ALIDGCAKAGQVAKAFGAYGIMRSKNV 193 (623)
Q Consensus 117 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~ 193 (623)
.+.+++...-+..-..|.-+..+.|+..+|.+.|+++.+. .|-...+| .||.++....-+.+...++.+.-....
T Consensus 265 a~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdisl 342 (556)
T KOG3807|consen 265 AQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISL 342 (556)
T ss_pred hhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q ss_pred CCCHHHHHH
Q 006981 194 KPDRVVFNA 202 (623)
Q Consensus 194 ~p~~~~~~~ 202 (623)
+.+.....+
T Consensus 343 PkSA~icYT 351 (556)
T KOG3807|consen 343 PKSAAICYT 351 (556)
T ss_pred cchHHHHHH
No 416
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=30.64 E-value=2.7e+02 Score=22.00 Aligned_cols=71 Identities=13% Similarity=0.122 Sum_probs=32.7
Q ss_pred HHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006981 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD--DVEVGLMLLSQAKEDGVIPNLVMFKCI 450 (623)
Q Consensus 378 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g--~~~~a~~~~~~~~~~g~~p~~~~~~~l 450 (623)
..++..|...|+.++|...+.++.... --......++..+...+ .-+....++..+.+.+..+......++
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf 78 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGF 78 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 345566666777777777776653210 11122233333333332 223344555666665554444333333
No 417
>PRK10941 hypothetical protein; Provisional
Probab=30.07 E-value=5e+02 Score=24.83 Aligned_cols=57 Identities=14% Similarity=-0.008 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 006981 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (623)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (623)
.|-.+|.+.++++.|+++.+.+.... +.+..-+.--.-.|.+.|.+..|..=++...
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 33344445555555555555554432 2223333333334444555555544444443
No 418
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=29.66 E-value=3.5e+02 Score=22.92 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=34.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcHHHHHHh
Q 006981 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM-FKCIIGMCSRRYEKARTL 464 (623)
Q Consensus 396 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~-~~~li~~~~~~~~~a~~~ 464 (623)
+...+.+.|++++..= ..++..+...++.-.|.++++++.+.+...+..| |++| +. +.++|-+
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L-~~----l~e~Glv 71 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTL-KL----LEEAGLV 71 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHH-HH----HHHCCCE
Confidence 3444556666655432 2344555566565677777777776655554444 4443 33 4555544
No 419
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=29.52 E-value=2.9e+02 Score=21.99 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 307 LSALIDFAGHAGKVEAAFEILQEAKN 332 (623)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (623)
|..++..|...|..++|++++.....
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56666666666666667666666655
No 420
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.31 E-value=6.2e+02 Score=25.71 Aligned_cols=170 Identities=11% Similarity=0.037 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006981 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGV--IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (623)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (623)
..+.-+...|..+|+++.|++.+.+...--. .-....|..+|..-.-.|++.....+..+....-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~------------- 217 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTP------------- 217 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCc-------------
Confidence 3566777888888888888888887544211 0012233344444455566666555555544321
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHC------CCCCCHHHHHHHHHHHHh
Q 006981 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL------GLCPNTITYSILLVACER 421 (623)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~~t~~~ll~a~~~ 421 (623)
.+ +.... ..+.+-...+..+.....+ ++..|.+.|-..... =+.|..++....+.|.+-
T Consensus 218 ---------~~---~~~~~-q~v~~kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAt 282 (466)
T KOG0686|consen 218 ---------DA---NENLA-QEVPAKLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALAT 282 (466)
T ss_pred ---------hh---hhhHH-HhcCcchHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhcc
Confidence 00 00000 0112333444444433332 555555544332211 134555555556666555
Q ss_pred cCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcHHHHHHhhHh
Q 006981 422 KDDVEVGLMLLSQAK-EDGVIPNLVMFKCIIGMCSRRYEKARTLNEH 467 (623)
Q Consensus 422 ~g~~~~a~~~~~~~~-~~g~~p~~~~~~~li~~~~~~~~~a~~~~~~ 467 (623)
.++-+--+.+.+... +.=.+.++....++-+-|.++|..|.++.+.
T Consensus 283 fdr~~Lk~~vi~n~~Fk~flel~Pqlr~il~~fy~sky~~cl~~L~~ 329 (466)
T KOG0686|consen 283 FDRQDLKLNVIKNESFKLFLELEPQLREILFKFYSSKYASCLELLRE 329 (466)
T ss_pred CCHHHHHHHHHcchhhhhHHhcChHHHHHHHHHhhhhHHHHHHHHHH
Confidence 554433322222111 1112334445556666666677777766554
No 421
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=29.18 E-value=5.2e+02 Score=24.83 Aligned_cols=28 Identities=4% Similarity=-0.009 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 162 VHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (623)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (623)
...+..+...|++.++.+.+.++.++..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~ 142 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLM 142 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 4456666777777777777766665543
No 422
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=29.04 E-value=5.8e+02 Score=25.29 Aligned_cols=64 Identities=16% Similarity=0.174 Sum_probs=48.2
Q ss_pred hhhHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006981 390 LPKTMEVLSDMKSLGLCPNTI----TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (623)
Q Consensus 390 ~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 455 (623)
.++.+.++++++.. .|+.. -|..+.......|.++..+.+|++++..|-.|-...-..+++.+.
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 45677777777764 46543 466777777788888888888888888888888888888887754
No 423
>PRK10941 hypothetical protein; Provisional
Probab=28.69 E-value=5.2e+02 Score=24.67 Aligned_cols=60 Identities=13% Similarity=0.012 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
+.+-.+|.+.++++.|.++.+.+.... +.++.-+.--.-.|.+.|.+..|..=++...+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 344455666666777776666666654 445555555555566666666666666655443
No 424
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=28.22 E-value=2.7e+02 Score=21.15 Aligned_cols=42 Identities=21% Similarity=0.392 Sum_probs=24.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006981 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (623)
Q Consensus 113 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 154 (623)
++|+.....|+..|+..|..+++.+.-.=..+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555655666666666666666655544445555555555554
No 425
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=28.11 E-value=2.8e+02 Score=21.25 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=15.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 006981 168 LIDGCAKAGQVAKAFGAYGIMRS 190 (623)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~ 190 (623)
+.......|++++|...+++..+
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 44455667777777777776653
No 426
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=27.92 E-value=2.8e+02 Score=23.08 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=27.7
Q ss_pred CccCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006981 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLD 58 (623)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~ 58 (623)
.+++++-..+..| ++..|+++.|+++.+-+.+.|...
T Consensus 45 g~qd~Vl~~~mvW--~~D~Gd~~~AL~~a~yAi~~~l~~ 81 (132)
T PF05944_consen 45 GAQDDVLMTVMVW--LFDVGDFDGALDIAEYAIEHGLPM 81 (132)
T ss_pred CCcCchHHhhHhh--hhcccCHHHHHHHHHHHHHcCCCc
Confidence 4555555555555 568999999999999999888643
No 427
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.80 E-value=2.5e+02 Score=20.93 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=13.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCC
Q 006981 133 LITTCAKSGKVDAMFEVFHEMVNAG 157 (623)
Q Consensus 133 li~~~~~~g~~~~A~~~~~~m~~~g 157 (623)
+++.+.+|.-.++|+++.+-|.++|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3444455555555555555555554
No 428
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=27.41 E-value=8.1e+02 Score=26.45 Aligned_cols=261 Identities=16% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 006981 78 KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (623)
Q Consensus 78 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 157 (623)
+.+....+.+..+....++.|++.+... +.+.-.++++++.. .. ...+..++++....|......-+.+.+....
T Consensus 296 ~L~~~~~~~~~~~~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~~---~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~ 370 (574)
T smart00638 296 HLVQDIASDVQEPAAAKFLRLVRLLRTL-SEEQLEQLWRQLYE-KK---KKARRIFLDAVAQAGTPPALKFIKQWIKNKK 370 (574)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhC-CHHHHHHHHHHHHh-CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHccCCH------HHHHHHHHHH
Q 006981 158 IEP-NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR-------VVFNALITACGQSGAV------DRAFDVLAEM 223 (623)
Q Consensus 158 ~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~------~~A~~~~~~m 223 (623)
+.+ .....-..+-...+.-..+-...+++-+.....++.. .++..+++-+|..... ++..+.+.+.
T Consensus 371 ~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~ 450 (574)
T smart00638 371 ITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHEL 450 (574)
T ss_pred CCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHH
Q ss_pred hhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCC
Q 006981 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT--GDWEFACSVYDDMTKKGVI 301 (623)
Q Consensus 224 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~~~~ 301 (623)
... ..-..|..--...|.++.+.|.......+-..+. .....+...-...+.++.+. ...+.+..++-..-...-.
T Consensus 451 l~~-~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e 528 (574)
T smart00638 451 LQQ-AVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLNRAE 528 (574)
T ss_pred HHH-HHhcCCchheeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCCCC
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHH
Q 006981 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-GISVGIISYSSL 345 (623)
Q Consensus 302 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l 345 (623)
+...=..+++......-.......+...+... ..+....+|+.|
T Consensus 529 ~~EvRiaA~~~lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l 573 (574)
T smart00638 529 PPEVRMAAVLVLMETKPSVALLQRIAELLNKEPNLQVASFVYSHI 573 (574)
T ss_pred ChHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCcHHHHHHhHHhh
No 429
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=27.17 E-value=4.1e+02 Score=25.81 Aligned_cols=71 Identities=13% Similarity=0.210 Sum_probs=53.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----------cCCHHHH
Q 006981 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ----------SGAVDRA 216 (623)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----------~g~~~~A 216 (623)
.++|+.+.+.++.|.-.++.-+.-.+.+.=.+.+++.+++.+... ..-|..|+..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 468888888888888888877777788888888899999888753 3336666665553 4888888
Q ss_pred HHHHHH
Q 006981 217 FDVLAE 222 (623)
Q Consensus 217 ~~~~~~ 222 (623)
+++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 888765
No 430
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.13 E-value=9.1e+02 Score=26.91 Aligned_cols=101 Identities=14% Similarity=0.087 Sum_probs=58.3
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006981 100 SVCASSKDSEGAFQVLRLVQEAGLKA---DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (623)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (623)
+-+.+.+.+++|+.+.+.... ..| -.......|+.+.-.|++++|-...-.|.. -+..-|.--+.-+...+
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcccc
Confidence 345666777777776654432 233 234566677777777888887777777763 35666666666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006981 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (623)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (623)
+..... .-+.......+...|..++..+..
T Consensus 438 ~l~~Ia---~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 438 QLTDIA---PYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccchhh---ccCCCCCcccCchHHHHHHHHHHH
Confidence 654332 222222112345566666666554
No 431
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=26.99 E-value=3.6e+02 Score=25.34 Aligned_cols=21 Identities=14% Similarity=0.233 Sum_probs=11.2
Q ss_pred HHHHHHHcCChHHHHHHHHHH
Q 006981 240 LMKACANAGQVDRAREVYKMI 260 (623)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~ 260 (623)
+...|.+.|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344455555555555555554
No 432
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=26.75 E-value=1.6e+02 Score=21.01 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 006981 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140 (623)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 140 (623)
|....++.++..+++-.-.+.++..+.++.+.| .-+..+|..-++.+++.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLARE 55 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 455667788888888777888888888888888 45667777666666654
No 433
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=26.70 E-value=3.2e+02 Score=25.68 Aligned_cols=23 Identities=4% Similarity=0.005 Sum_probs=16.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 006981 30 HSYNRLIRQGRISECIDLLEDME 52 (623)
Q Consensus 30 ~~~~~l~~~g~~~~A~~l~~~m~ 52 (623)
.....++..|+..+|+.-|+.-.
T Consensus 15 ki~rl~l~~~~~~~Av~q~~~H~ 37 (247)
T PF11817_consen 15 KICRLYLWLNQPTEAVRQFRAHI 37 (247)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH
Confidence 34556668888888888886654
No 434
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=26.35 E-value=1.5e+03 Score=29.18 Aligned_cols=62 Identities=16% Similarity=-0.007 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (623)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (623)
..+|....+....+|.++.|...+-...+.+ . +..+--...-..+.|+...|+.+++...+.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3567777777778999999988877776665 2 344555666778899999999999988753
No 435
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=26.29 E-value=2.4e+02 Score=21.61 Aligned_cols=58 Identities=12% Similarity=0.235 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCC
Q 006981 45 IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (623)
Q Consensus 45 ~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 107 (623)
-.+++.+.+.|+++..- .. ..-......+.+.++++.++.....+|..+..++...+.
T Consensus 23 ~~v~~~L~~~gvlt~~~-~~----~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 23 DELLIHLLQKDILTDSM-AE----SIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHHcCCCCHHH-HH----HHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 34677788888764321 11 112222345777777777777777777777777765443
No 436
>PRK09857 putative transposase; Provisional
Probab=25.99 E-value=5.8e+02 Score=24.71 Aligned_cols=66 Identities=12% Similarity=0.133 Sum_probs=34.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006981 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196 (623)
Q Consensus 130 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 196 (623)
+..++.-..+.++.++..++++.+.+. .+......-++..-+.+.|.-++++++-.+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344554445556655556666555543 122223333444555555555566666666666665443
No 437
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=25.58 E-value=6.5e+02 Score=24.73 Aligned_cols=62 Identities=13% Similarity=0.101 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006981 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (623)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 314 (623)
+.-+.+++++.+.+ +.+...+..++..+.+....++..+.++++...... +...|...|...
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~ 109 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFR 109 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHH
Confidence 34455666666554 455666666677777776777777777777665332 445555555543
No 438
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.54 E-value=8.5e+02 Score=26.06 Aligned_cols=146 Identities=15% Similarity=0.025 Sum_probs=0.0
Q ss_pred CCchHHHHHHHHHHhhhHHHHHHHHHhhhCC------------------------CCCHHHHHHH---HHHHHcCCChHH
Q 006981 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVP------------------------NPTLSTFNML---MSVCASSKDSEG 110 (623)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------------------~~~~~~~~~l---i~~~~~~~~~~~ 110 (623)
|........+..++..+|+.+-|..+.++.. +.|...|-++ +..+.+.|.+..
T Consensus 281 PYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rT 360 (665)
T KOG2422|consen 281 PYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRT 360 (665)
T ss_pred CcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHH
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCC---HHHHHH
Q 006981 111 AFQVLRLVQEAGLKADCKLYTTLITTCA-KSGKVDAMFEVFHEMVNAG---IEPNVHTYGALIDGCAKAGQ---VAKAFG 183 (623)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~---~~~A~~ 183 (623)
|++....+......-|+.....+|+.|+ +..++.-.+++++...... .-||-.--.+|...|.+... -+.|..
T Consensus 361 A~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~ 440 (665)
T KOG2422|consen 361 ALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALN 440 (665)
T ss_pred HHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHH
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHH
Q 006981 184 AYGIMRSKNVKPDRVVFNALITAC 207 (623)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~ 207 (623)
.+.+.... -+...+-|+..+
T Consensus 441 ~l~qAl~~----~P~vl~eLld~~ 460 (665)
T KOG2422|consen 441 ALLQALKH----HPLVLSELLDEL 460 (665)
T ss_pred HHHHHHHh----CcHHHHHHHHhc
No 439
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=25.25 E-value=6.7e+02 Score=24.77 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHH--HHHHHHHHcCCChhhHHHHHHHHHH-----CCCCCCH
Q 006981 340 ISYSSLMGACSNAKNWQKALELYEHMKS---IKLKPTVSTM--NALITALCDGDQLPKTMEVLSDMKS-----LGLCPNT 409 (623)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~ 409 (623)
.....++...-+.++.++|.+.++++.+ .--.|+.+.| +.+...+...|+..++.+++.+..+ .|+.|+.
T Consensus 76 slvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 76 SLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Q ss_pred HH--HHHHHHHHHhcCCHHHHHH
Q 006981 410 IT--YSILLVACERKDDVEVGLM 430 (623)
Q Consensus 410 ~t--~~~ll~a~~~~g~~~~a~~ 430 (623)
.+ |..--.-|...|++....+
T Consensus 156 h~~fY~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 156 HSSFYSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred hhhHHHHHHHHHHHHHhHHHHHH
No 440
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=25.05 E-value=2.1e+02 Score=22.78 Aligned_cols=34 Identities=15% Similarity=0.043 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006981 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423 (623)
Q Consensus 390 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 423 (623)
.-.|.++++.+.+.+..++..|....|+.+...|
T Consensus 16 ~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 16 HLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 3344444444444433334444333333333333
No 441
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=25.03 E-value=1.4e+02 Score=16.66 Aligned_cols=13 Identities=31% Similarity=0.710 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHHh
Q 006981 250 VDRAREVYKMIHK 262 (623)
Q Consensus 250 ~~~A~~~~~~~~~ 262 (623)
.+.+..+|+.+..
T Consensus 3 ~~~~r~i~e~~l~ 15 (33)
T smart00386 3 IERARKIYERALE 15 (33)
T ss_pred HHHHHHHHHHHHH
Confidence 4444445544443
No 442
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=24.89 E-value=2.8e+02 Score=22.21 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=29.4
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006981 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137 (623)
Q Consensus 97 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 137 (623)
++|+-+.++...++|+++.+.|.++| .-+...-+.|-..+
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L 105 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSIL 105 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 45677788889999999999999998 55555544444443
No 443
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=24.58 E-value=6.8e+02 Score=24.61 Aligned_cols=40 Identities=15% Similarity=0.067 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHHH
Q 006981 163 HTYGALIDGCAKAGQVAKAFGAYGIMRS----KNVKPDRVVFNA 202 (623)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~ 202 (623)
..+-....-||+-|+.+.|++.+++..+ .|.+.|++.+..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~i 148 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKI 148 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHH
Confidence 3455666678888888888877765543 355666555543
No 444
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=24.29 E-value=1.2e+03 Score=27.15 Aligned_cols=154 Identities=11% Similarity=-0.018 Sum_probs=76.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCHHHHHHH
Q 006981 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA-AFEILQEAKNQGISVGIISYSSL 345 (623)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~l 345 (623)
+|..+-...+.++.+.+..+. +..... .++...-.....++...+..+. +...+..+.+ .++..+-.+.
T Consensus 726 ~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA 795 (897)
T PRK13800 726 PDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAA 795 (897)
T ss_pred CCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHH
Confidence 344455555555555444322 111211 2344444555555555554332 2333334333 2356666677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006981 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425 (623)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 425 (623)
+.++.+.|....+...+....+ .++...-...+.++.+.+. +++...+..+.+ .|+...=...+.++.+.+..
T Consensus 796 ~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~ 868 (897)
T PRK13800 796 LAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTRWPGD 868 (897)
T ss_pred HHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhccCCC
Confidence 7777777765444333333333 2444444555666666554 445555555554 45655555666666665333
Q ss_pred HHHHHHHHHHHH
Q 006981 426 EVGLMLLSQAKE 437 (623)
Q Consensus 426 ~~a~~~~~~~~~ 437 (623)
..+...+..+.+
T Consensus 869 ~~a~~~L~~al~ 880 (897)
T PRK13800 869 PAARDALTTALT 880 (897)
T ss_pred HHHHHHHHHHHh
Confidence 455555555554
No 445
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=24.21 E-value=1.6e+03 Score=28.89 Aligned_cols=150 Identities=15% Similarity=0.108 Sum_probs=92.5
Q ss_pred HHHHHHHcCCChHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 97 MLMSVCASSKDSEGAFQVLRLV----QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (623)
Q Consensus 97 ~li~~~~~~~~~~~A~~~~~~m----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (623)
++..+-.+++.+.+|+..++.- .+. .-....|..+...|+..+++|...-+...... .|+ .+ .-|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~-~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LY-QQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HH-HHHHHH
Confidence 3444556678888888888773 211 11123344455589999998887777664221 233 23 334446
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHH-HHHHHHcCChH
Q 006981 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL-MKACANAGQVD 251 (623)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l-l~~~~~~g~~~ 251 (623)
...|++..|...|+.+.+.+ ++...+++.++......|.++......+-.... ..+....++++ +.+--+.++++
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~---~se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN---RSEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc---cCHHHHHHHHHHHHHHhhhcchh
Confidence 77899999999999998774 334677887887777778887777665555432 23333334433 23335667777
Q ss_pred HHHHHHH
Q 006981 252 RAREVYK 258 (623)
Q Consensus 252 ~A~~~~~ 258 (623)
.....+.
T Consensus 1536 ~~e~~l~ 1542 (2382)
T KOG0890|consen 1536 LLESYLS 1542 (2382)
T ss_pred hhhhhhh
Confidence 6666555
No 446
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=24.13 E-value=9.7e+02 Score=26.23 Aligned_cols=215 Identities=14% Similarity=0.139 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhCCCCCCHH---
Q 006981 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ-------VAKAFGAYGIMRSKNVKPDRV--- 198 (623)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~--- 198 (623)
+|. +|--|.++|++++|.++..+.... .......+-..+..|+...+ -++...-|++........|+.
T Consensus 114 ~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~A 191 (613)
T PF04097_consen 114 IWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRA 191 (613)
T ss_dssp HHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHH
T ss_pred cHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHH
Confidence 454 566778999999999998554432 24455567777787876532 245666666666553322443
Q ss_pred HHHHHHHHHHccC-CHHHHHHHHHHHhhCCCCCCCCHH--HHHHHHHHHHHcC-----------ChHHHHHHHHHHHhcC
Q 006981 199 VFNALITACGQSG-AVDRAFDVLAEMNAEVHPVDPDHI--TIGALMKACANAG-----------QVDRAREVYKMIHKYN 264 (623)
Q Consensus 199 ~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~--~~~~ll~~~~~~g-----------~~~~A~~~~~~~~~~~ 264 (623)
.|..+ ..|--.. ...+ +..+.. .|--|. +.+.. .+++-.+.....-+..
T Consensus 192 vY~il-g~cD~~~~~~~~--------------V~~tiED~LW~~L~--~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~ 254 (613)
T PF04097_consen 192 VYKIL-GRCDLSRRHLPE--------------VARTIEDWLWLQLS--LVREDERSSSSAYERYTLEDLQKLILKYGESH 254 (613)
T ss_dssp HHHHH-HT--CCC-S-TT--------------C--SHHHHHHHHHH--H---TTSSSSSSS----HHHHHHHHHHH-GGG
T ss_pred HHHHH-hcCCccccchHH--------------HhCcHHHHHHHHHH--hhccCCCccccccccccHHHHHHHHHHhchhh
Confidence 23322 1111100 0100 011111 111111 11111 1112222222222222
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHH
Q 006981 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYS 343 (623)
Q Consensus 265 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~ 343 (623)
+.+ ....-.....+.-.|+++.|.+.+-+ ..+...|.+.+...+..| |-+......-..+.... -.|...-+.
T Consensus 255 F~~-~~~p~~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~---gLL~~~~~~~~~lls~~~~~~~~ln~a 328 (613)
T PF04097_consen 255 FNA-GSNPLLYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYY---GLLRVSDSSSAPLLSVDPGDPPPLNFA 328 (613)
T ss_dssp CTT-------HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT---T------------------------HH
T ss_pred ccc-chhHHHHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHc---CCCCCCCccccceeeecCCCCCCcCHH
Confidence 222 11112234455678999999998877 222233555555554433 32222222112222211 111225677
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHHHhC
Q 006981 344 SLMGACSN---AKNWQKALELYEHMKSI 368 (623)
Q Consensus 344 ~li~~~~~---~g~~~~A~~~~~~m~~~ 368 (623)
.||..|.+ ..+..+|.+.|--+...
T Consensus 329 rLI~~Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 329 RLIGQYTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp HHHHHHHHTTTTT-HHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHc
Confidence 88888875 46788888888777653
No 447
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=23.82 E-value=6e+02 Score=23.70 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006981 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303 (623)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 303 (623)
.|.+.....++..+ ..+++++|.+++.++-+.|..|.
T Consensus 236 ~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 236 EPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred CCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHH
Confidence 44455555555543 34567777777777777776654
No 448
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=23.73 E-value=9.2e+02 Score=26.81 Aligned_cols=47 Identities=17% Similarity=0.130 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 285 WEFACSVYDDMT-KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (623)
Q Consensus 285 ~~~A~~l~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (623)
.++....+.... ..|+..+......++... .|++..++.+++++...
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~ 227 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIAL 227 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHh
Confidence 345555555444 457766777777776654 58899999888877653
No 449
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=23.56 E-value=6.7e+02 Score=24.12 Aligned_cols=211 Identities=15% Similarity=0.104 Sum_probs=102.7
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchH------HHHHHHHHHhhhHHHH-------HHHHHhhhCC-CCCH
Q 006981 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKV------YHARFFNVCKSQKAIK-------EAFRFFKLVP-NPTL 92 (623)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~------~~~~l~~~~~~~~~~~-------~A~~~~~~~~-~~~~ 92 (623)
..+...|.+++.+++++|.+.+.++...|+...... ....+...+.+.|+.. ....++.... +..+
T Consensus 5 ~sle~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~ 84 (421)
T COG5159 5 SSLELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKIT 84 (421)
T ss_pred chHHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHH
Confidence 346778899999999999999999998886433222 2223344444433322 2222232222 2333
Q ss_pred HHHHHHHHHHHcC-CChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHH----HHCCCCCCH
Q 006981 93 STFNMLMSVCASS-KDSEGAFQVLRLVQEAGLKAD-----CKLYTTLITTCAKSGKVDAMFEVFHEM----VNAGIEPNV 162 (623)
Q Consensus 93 ~~~~~li~~~~~~-~~~~~A~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~~~~ 162 (623)
....+++.-+... ..++.-+.+.....++..+.. ...-..++..+.+.|.+.+|+.+...+ .+..-+++.
T Consensus 85 KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~L 164 (421)
T COG5159 85 KIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINL 164 (421)
T ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccce
Confidence 4445555544332 334445555544443321111 112345677777788887777654433 333323443
Q ss_pred HHHHHH-HHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHHHHHHHH--HccCCHHHHHHHHHHHhhCCCCCCCCHH
Q 006981 163 HTYGAL-IDGCAKAGQVAKAFGAYGIMRS----KNVKPDRVVFNALITAC--GQSGAVDRAFDVLAEMNAEVHPVDPDHI 235 (623)
Q Consensus 163 ~~~~~l-i~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 235 (623)
.+...+ -..|-+-.+..++..-+...+. .-++|-...---|+++- |...++..|...|-+..+.......|..
T Consensus 165 i~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~k 244 (421)
T COG5159 165 ITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVK 244 (421)
T ss_pred eehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHH
Confidence 322221 1233333444443333333221 12344444444455443 3345566777776666553223333433
Q ss_pred HH
Q 006981 236 TI 237 (623)
Q Consensus 236 ~~ 237 (623)
.+
T Consensus 245 Ac 246 (421)
T COG5159 245 AC 246 (421)
T ss_pred HH
Confidence 33
No 450
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=23.25 E-value=6.1e+02 Score=23.61 Aligned_cols=59 Identities=17% Similarity=0.137 Sum_probs=35.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHh
Q 006981 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ-TGDWEFACSVYDDMTK 297 (623)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~ 297 (623)
.++..+.+.++++++...++.+...+...+..-.|.+-.+|-. .|....+.+++..+..
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 3556667777777777777777777666666666666666633 3444555555555543
No 451
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=23.11 E-value=7e+02 Score=24.22 Aligned_cols=190 Identities=12% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHcCCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcC-----ChhHHHHHHHH---------HHHCCCCCC--
Q 006981 99 MSVCASSKDSEGAFQVLRLVQEA-GLKADCKLYTTLITTCAKSG-----KVDAMFEVFHE---------MVNAGIEPN-- 161 (623)
Q Consensus 99 i~~~~~~~~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~---------m~~~g~~~~-- 161 (623)
+-++++.|..+ ...+++.+... .-.++...+..++..+.... ..+.....|+. +.+.|.++.
T Consensus 45 ~~al~~~g~~~-~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 123 (324)
T PF11838_consen 45 LFALARAGRLS-YSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPG 123 (324)
T ss_dssp HHHHHHTTSS--HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--
T ss_pred HHHHHHcCCCC-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Q ss_pred HHHHHHHHHHH-HhcCC-----HHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 006981 162 VHTYGALIDGC-AKAGQ-----VAKAFGAYGIMRSKNV----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231 (623)
Q Consensus 162 ~~~~~~li~~~-~~~g~-----~~~A~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 231 (623)
......+++.. ..... .+.|.+.|+.....+. ..+...-..++....+.|+.+.-..+++.... .
T Consensus 124 ~~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~-----~ 198 (324)
T PF11838_consen 124 EDHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN-----S 198 (324)
T ss_dssp SCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT-----T
T ss_pred ccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc-----c
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHH
Q 006981 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC-SQTGDWEFACSVYDD 294 (623)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~l~~~ 294 (623)
++......++.+.+...+.+...++++.+...+..+.......+.... ....-.+.+.+.+..
T Consensus 199 ~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 199 TSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp STHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 452
>PRK13342 recombination factor protein RarA; Reviewed
Probab=23.06 E-value=8.3e+02 Score=25.05 Aligned_cols=41 Identities=17% Similarity=-0.028 Sum_probs=22.7
Q ss_pred HHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006981 273 TIAINCCSQ---TGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (623)
Q Consensus 273 ~~li~~~~~---~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~ 313 (623)
..+++++.+ ..+++.|+..+..|.+.|..|....-..++.+
T Consensus 231 ~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 334444443 35677777777777777766554443333333
No 453
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=23.04 E-value=4.2e+02 Score=23.11 Aligned_cols=59 Identities=8% Similarity=0.056 Sum_probs=29.8
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006981 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (623)
Q Consensus 119 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 178 (623)
.+.|+..+..-. .++..+...++.-.|.++++.+.+.+...+..|-.--+..+.+.|-+
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344554443322 34444444445555666666666655444554444444555555544
No 454
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=22.85 E-value=8.1e+02 Score=24.84 Aligned_cols=55 Identities=11% Similarity=0.111 Sum_probs=35.8
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHh--cCCHHHHHHHHHHHHhC
Q 006981 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVH--TYGALIDGCAK--AGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 136 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~--~g~~~~A~~~~~~m~~~ 191 (623)
.+...+++..|.++|+.+.+. ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344778888888888888776 444443 44455555543 45677888888776654
No 455
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=22.85 E-value=4.9e+02 Score=25.30 Aligned_cols=44 Identities=11% Similarity=0.150 Sum_probs=27.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (623)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (623)
.++++.+.+.++.|.-.++.-+.-.+.+.=.+.+...+|+.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 35566666666666666666666566666666666666666653
No 456
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=22.46 E-value=3.5e+02 Score=20.42 Aligned_cols=61 Identities=10% Similarity=0.121 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHH
Q 006981 45 IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEG 110 (623)
Q Consensus 45 ~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 110 (623)
..+++.+.+.|++...- .-..-....+.+.|.++.+..+.....+|.++..++...|...-
T Consensus 19 ~~v~~~L~~~~Vlt~~~-----~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~L 79 (84)
T cd08326 19 KYLWDHLLSRGVFTPDM-----IEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDL 79 (84)
T ss_pred HHHHHHHHhcCCCCHHH-----HHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHH
Confidence 34777777777653321 11112233446777777777777777777777777766665443
No 457
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=22.24 E-value=2e+02 Score=20.34 Aligned_cols=25 Identities=4% Similarity=0.232 Sum_probs=18.9
Q ss_pred hcC-CHHHHHHHHHHHHHcCCCCCch
Q 006981 37 RQG-RISECIDLLEDMERKGLLDMDK 61 (623)
Q Consensus 37 ~~g-~~~~A~~l~~~m~~~~~~~~~~ 61 (623)
.+| +++.|+..|.++...|.+|..+
T Consensus 36 ~~~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 36 DNNWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred HcCCCHHHHHHHHHHHHhcCCCChhh
Confidence 444 8888999999988887766543
No 458
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=21.43 E-value=8.9e+02 Score=24.78 Aligned_cols=64 Identities=16% Similarity=0.037 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC----CC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 006981 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHP----VD-PDHITIGALMKACANAGQVDRAREVYKMIH 261 (623)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 261 (623)
.+...|++.++-.|++..|+++++.+.-...+ +. -...++--+.-+|.-.+++.+|.++|..+.
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777877777777665332111 01 122344455566777778888888887664
No 459
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=21.26 E-value=2.9e+02 Score=20.12 Aligned_cols=30 Identities=13% Similarity=0.247 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006981 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280 (623)
Q Consensus 250 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 280 (623)
.+.|..++..+.... +.++..||++...+.
T Consensus 13 tEmA~~mL~DLr~de-kRsPQLYnAI~k~L~ 42 (82)
T PF11123_consen 13 TEMAQQMLADLRDDE-KRSPQLYNAIGKLLD 42 (82)
T ss_pred HHHHHHHHHHhcchh-hcChHHHHHHHHHHH
Confidence 444555555554433 344556666555443
No 460
>PRK09857 putative transposase; Provisional
Probab=21.22 E-value=5.3e+02 Score=24.99 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=7.3
Q ss_pred hhHHHHHHHHHHCCCC
Q 006981 391 PKTMEVLSDMKSLGLC 406 (623)
Q Consensus 391 ~~A~~l~~~m~~~g~~ 406 (623)
++++++.++|...|+.
T Consensus 257 e~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 257 SKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 3444444444444443
No 461
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=20.91 E-value=2.1e+02 Score=23.08 Aligned_cols=37 Identities=8% Similarity=0.167 Sum_probs=19.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHH
Q 006981 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM-FKCI 450 (623)
Q Consensus 414 ~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~-~~~l 450 (623)
.++......+..-.|.++++.+.+.|...+..| |++|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L 49 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTL 49 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHH
Confidence 344444555555566667777766665555554 4433
No 462
>PF11417 Inhibitor_G39P: Loader and inhibitor of phage G40P; InterPro: IPR024424 G39P inhibits the initiation of DNA replication by blocking G40P replicative helicase. G39P has a bipartite stricture consisting of a folded N-terminal domain and an unfolded C-terminal domain. The C-terminal is essential for helicase interaction [].; PDB: 1NO1_B.
Probab=20.65 E-value=2.7e+02 Score=20.26 Aligned_cols=37 Identities=8% Similarity=0.113 Sum_probs=26.6
Q ss_pred ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 006981 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD 60 (623)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~ 60 (623)
+...-+.+|..+++...++.+..-+......+..|++
T Consensus 28 ~~k~~v~~W~~~L~d~~ye~v~~al~~~i~~~kfPPs 64 (71)
T PF11417_consen 28 DSKETVDLWYDMLKDYDYEIVMKALKKHIATNKFPPS 64 (71)
T ss_dssp THHHHHHHHHHHHTTS-HHHHHHHHHHHHHH-SS---
T ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcC
Confidence 3445688999999999999999999888877766654
No 463
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=20.37 E-value=6.3e+02 Score=23.10 Aligned_cols=53 Identities=11% Similarity=0.057 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHCCCCC----CHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006981 391 PKTMEVLSDMKSLGLCP----NTITYS-ILLVACERKDDVEVGLMLLSQAKEDGVIPN 443 (623)
Q Consensus 391 ~~A~~l~~~m~~~g~~p----~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~ 443 (623)
..|++.|.+..+..-.| +..+.. .+.....+.|+.++|.+.|.+++..+-.+.
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 45666666655432222 233333 333556778999999999998887643333
No 464
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=20.32 E-value=5.8e+02 Score=22.24 Aligned_cols=37 Identities=8% Similarity=-0.128 Sum_probs=15.8
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006981 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424 (623)
Q Consensus 388 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 424 (623)
++.-.|.++++.+.+.+..++..|....|..+...|-
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 3334444444444444434444443333444444433
No 465
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.30 E-value=1.1e+03 Score=25.21 Aligned_cols=46 Identities=17% Similarity=0.186 Sum_probs=26.7
Q ss_pred HHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 286 EFACSVYDDM-TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (623)
Q Consensus 286 ~~A~~l~~~m-~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (623)
++..+.+... .+.|+..+......++... .|++..|..+++++...
T Consensus 181 ~~i~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~ 227 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAY 227 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhc
Confidence 3334444333 3456666666665555443 57888888888766543
No 466
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.16 E-value=74 Score=31.06 Aligned_cols=48 Identities=15% Similarity=0.092 Sum_probs=20.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006981 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (623)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 154 (623)
|.++.|++.|...++.+ ++....|..-.+++.+.++...|++=++...
T Consensus 128 G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ 175 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAI 175 (377)
T ss_pred cchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhh
Confidence 34444444444444333 3333333333444444444444444444333
No 467
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=20.13 E-value=3.2e+02 Score=19.15 Aligned_cols=13 Identities=38% Similarity=0.524 Sum_probs=4.7
Q ss_pred CCHHHHHHHHHHH
Q 006981 318 GKVEAAFEILQEA 330 (623)
Q Consensus 318 g~~~~a~~~~~~~ 330 (623)
|++-+|-++++.+
T Consensus 13 g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 13 GDFFEAHEVLEEL 25 (62)
T ss_dssp T-HHHHHHHHHHH
T ss_pred CCHHHhHHHHHHH
Confidence 3333333333333
No 468
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=20.08 E-value=6.4e+02 Score=22.65 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=11.9
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 006981 420 ERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 420 ~~~g~~~~a~~~~~~~~~ 437 (623)
.+.|+++.|.+.++-|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 356777777777766654
No 469
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=20.07 E-value=2e+02 Score=29.60 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=20.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHH
Q 006981 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYH 64 (623)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~ 64 (623)
.+..++.+.++.|..++.+.++.+ |..+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld--pnca~~~ 41 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD--PNCAIYF 41 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC--Ccceeee
Confidence 455667778888888888888776 4444433
Done!