Query 006981
Match_columns 623
No_of_seqs 775 out of 3913
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 14:03:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006981.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006981hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.5E-35 5.2E-40 320.6 43.0 416 27-456 82-562 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.3E-33 7.9E-38 303.5 43.0 403 32-450 124-590 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.3E-30 4.5E-35 270.8 25.6 202 254-455 10-221 (501)
4 4g26_A Pentatricopeptide repea 100.0 5.4E-30 1.9E-34 266.2 25.5 188 235-422 27-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 3E-26 1E-30 233.6 48.1 377 32-422 6-386 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 3.4E-25 1.2E-29 225.8 46.4 362 69-443 7-371 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 2.5E-21 8.6E-26 201.2 39.0 332 90-434 24-405 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 5.2E-21 1.8E-25 198.8 40.2 326 111-451 11-370 (450)
9 2gw1_A Mitochondrial precursor 99.9 4E-21 1.4E-25 203.3 36.5 404 29-446 10-484 (514)
10 2gw1_A Mitochondrial precursor 99.9 1.5E-20 5E-25 198.9 38.1 373 28-412 42-485 (514)
11 3fp2_A TPR repeat-containing p 99.9 7.1E-20 2.4E-24 194.9 37.3 392 31-438 31-491 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 1.3E-17 4.6E-22 167.0 41.3 313 91-437 2-334 (359)
13 3ieg_A DNAJ homolog subfamily 99.8 3E-17 1E-21 164.4 42.1 313 126-473 2-337 (359)
14 3fp2_A TPR repeat-containing p 99.8 1.5E-17 5E-22 176.9 41.1 388 62-465 26-485 (537)
15 3hym_B Cell division cycle pro 99.8 3.6E-17 1.2E-21 161.9 31.8 280 130-419 25-314 (330)
16 3hym_B Cell division cycle pro 99.8 6.7E-17 2.3E-21 160.0 33.2 293 89-390 19-321 (330)
17 2xm6_A Protein corresponding t 99.8 7E-15 2.4E-19 154.3 50.0 365 44-441 26-435 (490)
18 2ooe_A Cleavage stimulation fa 99.8 2E-15 6.7E-20 160.1 44.9 407 22-437 10-491 (530)
19 2xm6_A Protein corresponding t 99.8 1.2E-14 4.2E-19 152.4 48.9 338 38-405 56-434 (490)
20 1fch_A Peroxisomal targeting s 99.8 5.1E-17 1.7E-21 163.7 25.0 297 74-398 38-354 (368)
21 1fch_A Peroxisomal targeting s 99.8 4.7E-17 1.6E-21 164.0 24.7 302 37-363 37-354 (368)
22 4eqf_A PEX5-related protein; a 99.7 2.6E-16 9E-21 158.4 25.9 266 90-362 63-350 (365)
23 2ooe_A Cleavage stimulation fa 99.7 4.1E-14 1.4E-18 150.0 44.0 396 48-453 2-472 (530)
24 3spa_A Mtrpol, DNA-directed RN 99.7 3.3E-18 1.1E-22 182.2 12.3 148 304-456 127-284 (1134)
25 3spa_A Mtrpol, DNA-directed RN 99.7 7.8E-19 2.7E-23 187.0 7.4 150 92-248 127-286 (1134)
26 3cv0_A Peroxisome targeting si 99.7 1.3E-15 4.4E-20 150.5 28.0 279 91-399 20-311 (327)
27 1b89_A Protein (clathrin heavy 99.7 5.6E-17 1.9E-21 160.6 17.6 290 29-361 6-304 (449)
28 4eqf_A PEX5-related protein; a 99.7 2.8E-16 9.7E-21 158.2 23.4 273 129-434 67-352 (365)
29 3mkr_A Coatomer subunit epsilo 99.7 1.9E-15 6.4E-20 146.4 27.9 256 30-299 4-265 (291)
30 3cv0_A Peroxisome targeting si 99.7 1.4E-15 4.8E-20 150.2 25.7 277 129-436 23-313 (327)
31 1b89_A Protein (clathrin heavy 99.7 2.6E-17 8.9E-22 163.0 12.5 283 72-396 14-304 (449)
32 3mkr_A Coatomer subunit epsilo 99.7 2.3E-14 7.9E-19 138.7 28.4 194 233-437 64-263 (291)
33 4g1t_A Interferon-induced prot 99.7 4E-14 1.4E-18 147.7 32.2 213 61-279 51-291 (472)
34 1xi4_A Clathrin heavy chain; a 99.7 2.7E-12 9.4E-17 141.5 45.7 375 29-462 989-1375(1630)
35 4g1t_A Interferon-induced prot 99.7 5.9E-14 2E-18 146.5 29.8 375 29-438 51-459 (472)
36 1xi4_A Clathrin heavy chain; a 99.6 7.7E-12 2.6E-16 138.0 43.4 313 32-395 1056-1376(1630)
37 3e4b_A ALGK; tetratricopeptide 99.6 2.1E-13 7.2E-18 140.9 26.4 349 28-404 6-388 (452)
38 3uq3_A Heat shock protein STI1 99.6 5.8E-13 2E-17 126.3 25.6 90 309-400 144-233 (258)
39 3uq3_A Heat shock protein STI1 99.6 7.7E-13 2.6E-17 125.4 25.5 223 93-331 6-234 (258)
40 2pl2_A Hypothetical conserved 99.6 6.2E-13 2.1E-17 122.8 22.8 81 198-282 6-86 (217)
41 2pl2_A Hypothetical conserved 99.6 5.5E-13 1.9E-17 123.1 22.0 197 90-294 3-210 (217)
42 2ho1_A Type 4 fimbrial biogene 99.5 5.8E-12 2E-16 119.1 27.8 201 92-298 37-238 (252)
43 2vq2_A PILW, putative fimbrial 99.5 1E-11 3.5E-16 114.9 27.9 201 91-297 7-210 (225)
44 2vq2_A PILW, putative fimbrial 99.5 1.2E-11 4.2E-16 114.3 27.4 202 126-332 7-210 (225)
45 2ho1_A Type 4 fimbrial biogene 99.5 1.6E-11 5.6E-16 115.9 28.5 201 127-333 37-238 (252)
46 1ouv_A Conserved hypothetical 99.5 8.8E-11 3E-15 112.5 33.8 221 163-403 7-251 (273)
47 1xnf_A Lipoprotein NLPI; TPR, 99.5 6E-13 2E-17 127.7 18.3 241 75-327 19-269 (275)
48 2h6f_A Protein farnesyltransfe 99.5 7.2E-12 2.5E-16 125.4 26.6 247 91-347 96-361 (382)
49 2q7f_A YRRB protein; TPR, prot 99.5 1.7E-12 5.9E-17 121.9 21.0 203 90-299 21-223 (243)
50 1ouv_A Conserved hypothetical 99.5 8.3E-11 2.8E-15 112.7 32.5 224 196-439 5-252 (273)
51 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.1E-12 3.7E-17 125.9 19.3 222 104-333 17-244 (275)
52 3u4t_A TPR repeat-containing p 99.5 6.2E-12 2.1E-16 120.4 24.6 59 237-296 77-135 (272)
53 3u4t_A TPR repeat-containing p 99.5 7.9E-12 2.7E-16 119.6 25.1 230 132-367 8-249 (272)
54 2h6f_A Protein farnesyltransfe 99.5 1.1E-11 3.8E-16 124.0 25.9 248 127-384 97-363 (382)
55 3e4b_A ALGK; tetratricopeptide 99.5 5.8E-12 2E-16 130.1 23.9 342 67-440 9-389 (452)
56 2q7f_A YRRB protein; TPR, prot 99.5 4.1E-12 1.4E-16 119.3 20.7 199 127-332 23-221 (243)
57 4e6h_A MRNA 3'-END-processing 99.4 2.2E-09 7.4E-14 114.8 41.6 404 28-438 65-570 (679)
58 2ond_A Cleavage stimulation fa 99.4 4.9E-10 1.7E-14 109.4 30.7 217 109-333 33-270 (308)
59 3sf4_A G-protein-signaling mod 99.4 8.1E-12 2.8E-16 127.1 18.5 303 91-425 8-363 (406)
60 3sf4_A G-protein-signaling mod 99.4 1.7E-11 5.8E-16 124.7 19.3 282 124-438 6-336 (406)
61 3vtx_A MAMA; tetratricopeptide 99.4 1.6E-10 5.3E-15 103.4 22.9 165 234-402 5-169 (184)
62 4a1s_A PINS, partner of inscut 99.4 1.4E-11 4.8E-16 125.8 18.0 278 93-402 49-371 (411)
63 4a1s_A PINS, partner of inscut 99.4 1.9E-11 6.5E-16 124.8 18.6 279 128-438 49-372 (411)
64 2ond_A Cleavage stimulation fa 99.4 1E-09 3.4E-14 107.2 29.8 219 214-438 33-270 (308)
65 3ro2_A PINS homolog, G-protein 99.4 3.6E-11 1.2E-15 118.5 19.7 62 376-437 265-331 (338)
66 3ro2_A PINS homolog, G-protein 99.3 7.2E-11 2.5E-15 116.4 21.0 202 94-296 7-250 (338)
67 3ulq_A Response regulator aspa 99.3 1.1E-10 3.7E-15 118.1 21.9 202 23-224 10-251 (383)
68 3ulq_A Response regulator aspa 99.3 2E-10 6.8E-15 116.1 23.4 227 102-330 22-290 (383)
69 4e6h_A MRNA 3'-END-processing 99.3 3E-08 1E-12 106.0 41.0 394 41-439 48-534 (679)
70 3vtx_A MAMA; tetratricopeptide 99.3 4.6E-10 1.6E-14 100.2 23.0 166 127-298 5-170 (184)
71 4abn_A Tetratricopeptide repea 99.3 6.8E-11 2.3E-15 122.9 20.0 215 107-330 83-318 (474)
72 4abn_A Tetratricopeptide repea 99.3 1.2E-10 4.2E-15 120.9 21.0 217 142-366 83-319 (474)
73 3nf1_A KLC 1, kinesin light ch 99.3 1.9E-11 6.5E-16 119.4 12.4 176 92-297 27-223 (311)
74 3nf1_A KLC 1, kinesin light ch 99.2 3E-10 1E-14 110.8 18.3 239 58-297 24-306 (311)
75 3q15_A PSP28, response regulat 99.2 8.1E-09 2.8E-13 104.0 27.9 229 204-437 108-364 (378)
76 1hz4_A MALT regulatory protein 99.2 9.4E-09 3.2E-13 103.2 28.2 266 171-437 23-321 (373)
77 1hz4_A MALT regulatory protein 99.2 1.1E-08 3.8E-13 102.7 27.9 233 98-330 20-279 (373)
78 3q15_A PSP28, response regulat 99.2 7.5E-09 2.6E-13 104.2 25.7 232 167-402 106-364 (378)
79 3as5_A MAMA; tetratricopeptide 99.2 3.3E-09 1.1E-13 94.3 20.6 24 376-399 146-169 (186)
80 3as5_A MAMA; tetratricopeptide 99.2 2.9E-09 9.8E-14 94.7 20.1 59 271-330 112-170 (186)
81 4i17_A Hypothetical protein; T 99.1 1.7E-08 5.9E-13 93.4 23.1 196 90-299 5-210 (228)
82 4gyw_A UDP-N-acetylglucosamine 99.1 5.5E-09 1.9E-13 113.0 22.3 165 234-402 9-173 (723)
83 4gyw_A UDP-N-acetylglucosamine 99.1 4.4E-09 1.5E-13 113.8 20.9 166 91-262 8-173 (723)
84 4i17_A Hypothetical protein; T 99.1 2.5E-08 8.5E-13 92.3 21.7 208 124-345 4-220 (228)
85 3edt_B KLC 2, kinesin light ch 99.0 3.2E-09 1.1E-13 101.7 14.0 133 92-224 43-196 (283)
86 3edt_B KLC 2, kinesin light ch 99.0 5.5E-09 1.9E-13 99.9 15.3 158 139-296 13-196 (283)
87 2fo7_A Synthetic consensus TPR 98.9 6.9E-08 2.3E-12 80.4 17.2 127 95-224 4-130 (136)
88 2fo7_A Synthetic consensus TPR 98.9 9.6E-08 3.3E-12 79.5 17.3 60 236-296 71-130 (136)
89 3mv2_B Coatomer subunit epsilo 98.9 1.8E-07 6.2E-12 88.8 20.1 179 111-298 85-282 (310)
90 3qky_A Outer membrane assembly 98.9 1.3E-07 4.5E-12 89.5 18.9 187 89-298 12-224 (261)
91 3mv2_B Coatomer subunit epsilo 98.9 9.8E-07 3.4E-11 83.7 24.5 184 216-410 85-287 (310)
92 3dra_A Protein farnesyltransfe 98.9 7.4E-07 2.5E-11 85.5 24.0 232 25-261 32-285 (306)
93 3qky_A Outer membrane assembly 98.8 1.4E-07 4.8E-12 89.3 18.7 185 126-333 14-224 (261)
94 1qqe_A Vesicular transport pro 98.8 7.9E-08 2.7E-12 92.8 17.0 206 212-436 32-267 (292)
95 2uy1_A Cleavage stimulation fa 98.8 2.1E-06 7E-11 89.0 28.5 356 38-452 7-392 (493)
96 2r5s_A Uncharacterized protein 98.8 6.1E-08 2.1E-12 85.6 14.5 165 22-189 3-171 (176)
97 3urz_A Uncharacterized protein 98.8 1.2E-07 4.2E-12 86.3 16.4 193 26-243 5-199 (208)
98 2pzi_A Probable serine/threoni 98.8 7.9E-08 2.7E-12 104.4 17.6 169 36-211 402-582 (681)
99 3urz_A Uncharacterized protein 98.8 2.2E-07 7.5E-12 84.6 17.7 136 310-451 60-197 (208)
100 1qqe_A Vesicular transport pro 98.8 2.7E-07 9.3E-12 89.0 19.2 211 142-401 32-267 (292)
101 4ga2_A E3 SUMO-protein ligase 98.8 8.8E-08 3E-12 82.0 13.7 143 67-212 3-149 (150)
102 3qou_A Protein YBBN; thioredox 98.8 2E-07 6.8E-12 89.7 17.0 156 30-188 122-281 (287)
103 3rjv_A Putative SEL1 repeat pr 98.8 1.1E-06 3.6E-11 80.2 21.2 174 110-299 4-198 (212)
104 2pzi_A Probable serine/threoni 98.8 8.9E-08 3E-12 104.0 15.6 154 138-298 402-563 (681)
105 3qou_A Protein YBBN; thioredox 98.7 3.3E-07 1.1E-11 88.1 17.7 163 126-295 116-281 (287)
106 2r5s_A Uncharacterized protein 98.7 2.1E-07 7.1E-12 82.2 14.0 160 238-401 10-171 (176)
107 3dra_A Protein farnesyltransfe 98.7 8.6E-06 2.9E-10 78.0 26.1 113 109-224 50-173 (306)
108 3rjv_A Putative SEL1 repeat pr 98.7 1.6E-06 5.6E-11 79.0 20.1 176 145-334 4-198 (212)
109 2yhc_A BAMD, UPF0169 lipoprote 98.7 2.2E-06 7.6E-11 78.9 20.4 202 92-334 4-214 (225)
110 2yhc_A BAMD, UPF0169 lipoprote 98.7 2.2E-06 7.6E-11 78.9 19.9 203 127-369 4-214 (225)
111 2vsy_A XCC0866; transferase, g 98.6 6.9E-07 2.4E-11 95.1 17.6 148 75-225 3-156 (568)
112 4ga2_A E3 SUMO-protein ligase 98.6 1.6E-07 5.4E-12 80.4 9.9 137 139-281 9-146 (150)
113 2vsy_A XCC0866; transferase, g 98.6 1.1E-06 3.7E-11 93.6 18.5 154 210-369 2-158 (568)
114 1hh8_A P67PHOX, NCF-2, neutrop 98.6 3.2E-06 1.1E-10 76.9 18.8 126 66-192 11-151 (213)
115 2ifu_A Gamma-SNAP; membrane fu 98.6 9.9E-07 3.4E-11 85.7 15.2 229 37-291 3-254 (307)
116 2ifu_A Gamma-SNAP; membrane fu 98.5 1.9E-06 6.4E-11 83.7 15.3 199 175-401 4-222 (307)
117 3q7a_A Farnesyltransferase alp 98.5 7.8E-05 2.7E-09 72.2 26.1 183 95-284 57-257 (349)
118 2uy1_A Cleavage stimulation fa 98.5 9.5E-05 3.3E-09 76.5 28.7 354 37-437 26-412 (493)
119 1na0_A Designed protein CTPR3; 98.5 5.7E-06 1.9E-10 67.4 15.5 98 92-191 9-106 (125)
120 3q7a_A Farnesyltransferase alp 98.4 0.00017 5.8E-09 69.8 26.7 174 139-319 66-257 (349)
121 1a17_A Serine/threonine protei 98.4 9.2E-06 3.1E-10 70.2 16.4 128 93-223 14-143 (166)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.4 2.4E-05 8.1E-10 71.0 19.8 124 203-333 12-150 (213)
123 2c2l_A CHIP, carboxy terminus 98.4 9.2E-07 3.2E-11 84.6 10.6 99 91-191 3-101 (281)
124 3u3w_A Transcriptional activat 98.4 3.3E-05 1.1E-09 74.2 21.7 92 204-296 82-182 (293)
125 4gco_A Protein STI-1; structur 98.4 9.3E-06 3.2E-10 66.8 15.0 98 92-191 13-110 (126)
126 3u3w_A Transcriptional activat 98.4 4.8E-05 1.6E-09 73.1 21.8 61 376-436 198-264 (293)
127 4f3v_A ESX-1 secretion system 98.4 3.7E-05 1.3E-09 71.9 20.0 188 104-299 18-238 (282)
128 1a17_A Serine/threonine protei 98.4 1.8E-05 6.3E-10 68.3 16.8 93 238-332 17-109 (166)
129 3gyz_A Chaperone protein IPGC; 98.3 3.9E-06 1.3E-10 71.4 11.7 99 91-191 35-133 (151)
130 1na0_A Designed protein CTPR3; 98.3 2.3E-05 7.7E-10 63.7 16.1 57 239-296 14-70 (125)
131 3dss_A Geranylgeranyl transfer 98.3 0.00023 7.8E-09 68.6 25.2 184 37-225 41-266 (331)
132 2qfc_A PLCR protein; TPR, HTH, 98.3 8.6E-05 2.9E-09 71.3 22.6 167 163-330 76-263 (293)
133 2vyi_A SGTA protein; chaperone 98.3 1.2E-05 4E-10 66.1 14.2 117 92-211 12-128 (131)
134 2lni_A Stress-induced-phosphop 98.3 9.8E-06 3.4E-10 67.0 13.6 99 91-191 15-113 (133)
135 2qfc_A PLCR protein; TPR, HTH, 98.3 4.8E-05 1.7E-09 73.0 20.0 167 271-437 77-265 (293)
136 4gco_A Protein STI-1; structur 98.3 2.5E-05 8.6E-10 64.2 15.3 92 239-332 18-109 (126)
137 2e2e_A Formate-dependent nitri 98.3 1.3E-05 4.3E-10 70.5 14.0 120 316-438 22-144 (177)
138 2lni_A Stress-induced-phosphop 98.3 2.5E-05 8.4E-10 64.5 15.0 98 234-333 16-113 (133)
139 2c2l_A CHIP, carboxy terminus 98.3 3.1E-06 1.1E-10 80.9 10.6 96 235-332 5-100 (281)
140 3gw4_A Uncharacterized protein 98.3 5.4E-06 1.8E-10 74.6 11.5 97 92-188 26-133 (203)
141 2e2e_A Formate-dependent nitri 98.3 7.4E-06 2.5E-10 72.0 12.1 118 105-225 23-143 (177)
142 3gw4_A Uncharacterized protein 98.2 1.2E-05 4.1E-10 72.3 13.2 24 413-436 151-174 (203)
143 4f3v_A ESX-1 secretion system 98.2 3.1E-05 1.1E-09 72.4 16.0 188 139-334 18-238 (282)
144 2vyi_A SGTA protein; chaperone 98.2 2.9E-05 9.8E-10 63.7 14.4 56 240-296 18-73 (131)
145 3gyz_A Chaperone protein IPGC; 98.2 7.3E-06 2.5E-10 69.8 10.6 97 127-225 36-132 (151)
146 1elw_A TPR1-domain of HOP; HOP 98.2 6.8E-05 2.3E-09 60.1 16.0 98 92-191 4-101 (118)
147 2vgx_A Chaperone SYCD; alterna 98.2 7.1E-06 2.4E-10 69.8 9.9 99 91-191 20-118 (148)
148 3upv_A Heat shock protein STI1 98.2 4.2E-05 1.4E-09 62.7 14.2 98 92-191 4-101 (126)
149 2vgx_A Chaperone SYCD; alterna 98.2 1.1E-05 3.7E-10 68.6 10.6 98 126-225 20-117 (148)
150 1p5q_A FKBP52, FK506-binding p 98.2 3.4E-05 1.2E-09 75.7 15.6 87 163-253 197-283 (336)
151 2kck_A TPR repeat; tetratricop 98.2 2.9E-05 9.8E-10 61.7 12.5 99 91-191 5-106 (112)
152 1p5q_A FKBP52, FK506-binding p 98.2 4.1E-05 1.4E-09 75.2 16.0 132 161-296 146-292 (336)
153 2fbn_A 70 kDa peptidylprolyl i 98.1 1E-05 3.5E-10 72.6 9.5 140 74-216 17-175 (198)
154 3dss_A Geranylgeranyl transfer 98.1 0.0051 1.8E-07 59.2 28.7 188 104-298 41-267 (331)
155 1elw_A TPR1-domain of HOP; HOP 98.1 0.00017 5.7E-09 57.7 15.8 13 246-258 16-28 (118)
156 4gcn_A Protein STI-1; structur 98.1 5.2E-05 1.8E-09 62.4 12.7 104 93-199 9-118 (127)
157 2xcb_A PCRH, regulatory protei 98.1 4E-05 1.4E-09 64.5 12.2 98 92-191 18-115 (142)
158 3q49_B STIP1 homology and U bo 98.1 9.7E-05 3.3E-09 61.3 14.4 99 90-190 7-105 (137)
159 2fbn_A 70 kDa peptidylprolyl i 98.1 8.6E-06 2.9E-10 73.2 8.3 123 163-289 39-176 (198)
160 1elr_A TPR2A-domain of HOP; HO 98.1 2.9E-05 1E-09 63.7 11.0 109 92-203 4-118 (131)
161 3upv_A Heat shock protein STI1 98.0 0.00011 3.9E-09 60.0 14.2 90 345-436 10-99 (126)
162 4gcn_A Protein STI-1; structur 98.0 5.6E-05 1.9E-09 62.1 12.2 105 341-448 10-120 (127)
163 4b4t_Q 26S proteasome regulato 98.0 6.8E-05 2.3E-09 76.5 15.1 147 26-188 5-161 (434)
164 3sz7_A HSC70 cochaperone (SGT) 98.0 0.00012 4.1E-09 63.2 13.9 99 91-191 10-108 (164)
165 2dba_A Smooth muscle cell asso 98.0 0.00025 8.6E-09 59.5 15.7 99 90-191 26-128 (148)
166 2kck_A TPR repeat; tetratricop 98.0 7.4E-05 2.5E-09 59.2 11.5 97 127-225 6-105 (112)
167 2dba_A Smooth muscle cell asso 97.9 0.00033 1.1E-08 58.7 15.7 26 129-154 30-55 (148)
168 1hxi_A PEX5, peroxisome target 97.9 9.6E-05 3.3E-09 60.1 11.7 95 95-191 20-114 (121)
169 2xcb_A PCRH, regulatory protei 97.9 0.00015 5.1E-09 60.9 13.1 92 239-332 23-114 (142)
170 3q49_B STIP1 homology and U bo 97.9 0.00027 9.3E-09 58.6 14.6 95 234-330 9-103 (137)
171 3sz7_A HSC70 cochaperone (SGT) 97.9 0.00023 7.9E-09 61.4 14.6 95 236-332 13-107 (164)
172 1elr_A TPR2A-domain of HOP; HO 97.9 0.00011 3.8E-09 60.1 11.9 97 128-225 5-107 (131)
173 4b4t_Q 26S proteasome regulato 97.8 0.00083 2.8E-08 68.3 19.0 166 272-437 58-244 (434)
174 1hxi_A PEX5, peroxisome target 97.8 0.00023 7.9E-09 57.8 11.5 85 244-330 27-111 (121)
175 1wao_1 Serine/threonine protei 97.8 0.00026 8.9E-09 73.0 14.0 120 99-221 13-134 (477)
176 2xev_A YBGF; tetratricopeptide 97.7 0.00073 2.5E-08 55.2 13.9 92 98-191 8-105 (129)
177 1wao_1 Serine/threonine protei 97.7 0.00026 9E-09 73.0 13.5 89 206-298 15-103 (477)
178 3ro3_A PINS homolog, G-protein 97.7 0.00022 7.5E-09 60.8 10.6 96 94-189 11-116 (164)
179 3ro3_A PINS homolog, G-protein 97.7 0.00031 1.1E-08 59.8 11.2 97 341-437 51-157 (164)
180 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00067 2.3E-08 69.6 15.3 123 92-216 268-404 (457)
181 3rkv_A Putative peptidylprolyl 97.6 0.00063 2.2E-08 58.4 12.7 99 92-191 11-126 (162)
182 2xev_A YBGF; tetratricopeptide 97.6 0.0017 5.8E-08 52.9 14.8 60 237-297 42-104 (129)
183 1ihg_A Cyclophilin 40; ppiase 97.6 0.00057 2E-08 67.8 13.3 137 94-254 225-361 (370)
184 3k9i_A BH0479 protein; putativ 97.6 0.00011 3.8E-09 59.3 6.2 84 106-190 4-89 (117)
185 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.0011 3.8E-08 68.0 15.0 85 307-393 320-404 (457)
186 1ihg_A Cyclophilin 40; ppiase 97.6 0.00093 3.2E-08 66.3 14.0 120 237-358 226-360 (370)
187 3k9i_A BH0479 protein; putativ 97.5 0.00022 7.6E-09 57.4 7.8 61 236-297 29-89 (117)
188 3rkv_A Putative peptidylprolyl 97.5 0.00089 3E-08 57.4 12.1 63 374-437 63-125 (162)
189 1dce_A Protein (RAB geranylger 97.5 0.0086 2.9E-07 62.9 21.3 172 106-284 43-241 (567)
190 2if4_A ATFKBP42; FKBP-like, al 97.4 0.0005 1.7E-08 67.4 10.3 147 93-263 180-328 (338)
191 1dce_A Protein (RAB geranylger 97.4 0.0054 1.8E-07 64.4 17.5 133 37-173 40-189 (567)
192 2hr2_A Hypothetical protein; a 97.4 0.0025 8.7E-08 53.6 12.0 95 95-189 14-129 (159)
193 2l6j_A TPR repeat-containing p 97.3 0.00023 7.8E-09 56.4 5.3 92 91-185 3-101 (111)
194 1klx_A Cysteine rich protein B 97.3 0.0068 2.3E-07 50.3 14.5 16 175-190 74-89 (138)
195 1klx_A Cysteine rich protein B 97.3 0.0028 9.7E-08 52.6 12.0 16 352-367 74-89 (138)
196 2hr2_A Hypothetical protein; a 97.3 0.0042 1.4E-07 52.3 12.5 61 236-297 59-130 (159)
197 2if4_A ATFKBP42; FKBP-like, al 97.3 0.00088 3E-08 65.6 9.8 149 128-299 180-329 (338)
198 1na3_A Designed protein CTPR2; 97.2 0.0033 1.1E-07 47.3 10.8 78 93-172 10-87 (91)
199 2kat_A Uncharacterized protein 97.1 0.0032 1.1E-07 50.1 10.0 77 111-189 4-80 (115)
200 3n71_A Histone lysine methyltr 97.1 0.0027 9.1E-08 65.2 11.3 88 173-260 320-419 (490)
201 3n71_A Histone lysine methyltr 97.1 0.0023 8E-08 65.6 10.6 86 245-330 320-419 (490)
202 1na3_A Designed protein CTPR2; 97.0 0.0077 2.6E-07 45.1 11.1 62 236-298 11-72 (91)
203 2kat_A Uncharacterized protein 97.0 0.0061 2.1E-07 48.5 10.4 62 234-296 19-80 (115)
204 2l6j_A TPR repeat-containing p 96.9 0.0034 1.2E-07 49.3 8.7 62 236-298 6-67 (111)
205 1zu2_A Mitochondrial import re 96.9 0.0029 1E-07 53.2 7.8 47 109-156 63-120 (158)
206 1zu2_A Mitochondrial import re 96.9 0.0033 1.1E-07 52.8 8.0 96 107-206 17-133 (158)
207 3ma5_A Tetratricopeptide repea 96.7 0.0094 3.2E-07 46.0 9.1 63 91-154 6-68 (100)
208 3ly7_A Transcriptional activat 96.6 0.078 2.7E-06 51.3 16.8 74 124-201 274-347 (372)
209 3ma5_A Tetratricopeptide repea 96.6 0.012 4.2E-07 45.4 9.2 62 234-296 7-68 (100)
210 3mkq_A Coatomer beta'-subunit; 96.2 0.056 1.9E-06 59.7 15.1 96 74-189 612-708 (814)
211 3mkq_A Coatomer beta'-subunit; 95.9 0.27 9.4E-06 54.1 19.0 155 100-295 607-762 (814)
212 3ly7_A Transcriptional activat 95.9 0.13 4.5E-06 49.6 13.7 135 88-225 190-338 (372)
213 1pc2_A Mitochondria fission pr 95.7 0.16 5.3E-06 42.2 11.6 96 354-453 13-113 (152)
214 2kc7_A BFR218_protein; tetratr 95.6 0.032 1.1E-06 42.6 7.0 53 102-155 10-63 (99)
215 3qww_A SET and MYND domain-con 95.5 0.082 2.8E-06 53.1 11.1 61 163-223 341-408 (433)
216 3qwp_A SET and MYND domain-con 95.4 0.13 4.6E-06 51.6 12.7 25 236-260 331-355 (429)
217 3qww_A SET and MYND domain-con 95.4 0.035 1.2E-06 55.8 8.2 25 341-365 342-366 (433)
218 2kc7_A BFR218_protein; tetratr 95.4 0.1 3.5E-06 39.6 9.3 56 242-298 8-64 (99)
219 3qwp_A SET and MYND domain-con 95.3 0.074 2.5E-06 53.5 10.4 62 375-436 330-398 (429)
220 3mkq_B Coatomer subunit alpha; 95.2 1.2 4.2E-05 37.8 16.2 98 173-293 16-113 (177)
221 3u64_A Protein TP_0956; tetrat 95.2 1.6 5.3E-05 40.5 17.6 92 213-308 179-281 (301)
222 3bee_A Putative YFRE protein; 95.1 0.16 5.3E-06 38.4 9.2 65 126-191 5-72 (93)
223 3bee_A Putative YFRE protein; 94.9 0.23 8E-06 37.4 9.6 66 90-156 4-72 (93)
224 1pc2_A Mitochondria fission pr 94.3 0.27 9.1E-06 40.8 9.3 86 320-409 14-104 (152)
225 3u64_A Protein TP_0956; tetrat 94.2 3.5 0.00012 38.2 20.3 96 250-345 179-283 (301)
226 1wy6_A Hypothetical protein ST 93.8 2.1 7.1E-05 34.3 15.4 137 282-440 20-156 (172)
227 3mkq_B Coatomer subunit alpha; 93.8 2.8 9.5E-05 35.6 17.0 24 163-186 35-58 (177)
228 1wy6_A Hypothetical protein ST 92.9 3 0.0001 33.4 15.6 61 273-334 95-155 (172)
229 2v5f_A Prolyl 4-hydroxylase su 92.9 1.1 3.9E-05 34.3 10.5 63 236-298 7-75 (104)
230 2v5f_A Prolyl 4-hydroxylase su 92.7 1.1 3.7E-05 34.4 10.1 62 95-156 8-75 (104)
231 1nzn_A CGI-135 protein, fissio 91.6 2.3 8E-05 33.7 10.7 21 417-437 82-102 (126)
232 4h7y_A Dual specificity protei 91.6 1.3 4.6E-05 36.2 9.3 64 386-450 72-135 (161)
233 4h7y_A Dual specificity protei 91.5 1.6 5.6E-05 35.7 9.7 106 88-195 9-127 (161)
234 1nzn_A CGI-135 protein, fissio 91.3 1.4 4.7E-05 35.1 9.0 96 310-409 7-107 (126)
235 4b4t_P 26S proteasome regulato 89.9 6.7 0.00023 39.3 15.2 65 19-84 11-79 (445)
236 4fhn_B Nucleoporin NUP120; pro 88.3 12 0.00039 42.9 17.3 87 128-216 900-990 (1139)
237 4b4t_P 26S proteasome regulato 87.7 24 0.00082 35.3 19.1 95 201-295 141-244 (445)
238 4ady_A RPN2, 26S proteasome re 86.6 42 0.0014 36.9 20.8 310 96-421 343-673 (963)
239 4ady_A RPN2, 26S proteasome re 86.5 42 0.0014 36.8 24.0 308 129-448 341-665 (963)
240 1v54_E Cytochrome C oxidase po 86.3 4.5 0.00016 30.4 8.0 65 389-454 25-89 (109)
241 2ff4_A Probable regulatory pro 85.9 3 0.0001 41.0 9.5 114 91-223 111-231 (388)
242 2ff4_A Probable regulatory pro 85.8 3.4 0.00011 40.7 9.8 72 129-201 173-249 (388)
243 4gns_B Protein CSD3, chitin bi 85.0 9.7 0.00033 40.8 13.3 53 313-366 346-398 (754)
244 2p58_C Putative type III secre 84.4 8.5 0.00029 28.8 8.6 86 106-200 21-106 (116)
245 4fhn_B Nucleoporin NUP120; pro 82.2 26 0.00089 40.0 16.4 84 272-357 902-989 (1139)
246 2uwj_G Type III export protein 81.8 8 0.00027 28.9 7.6 86 106-200 20-105 (115)
247 4gns_B Protein CSD3, chitin bi 81.0 19 0.00064 38.6 13.5 128 166-296 252-398 (754)
248 3o48_A Mitochondria fission 1 80.6 20 0.00069 28.6 12.1 79 371-453 37-120 (134)
249 2y69_E Cytochrome C oxidase su 79.8 15 0.00052 29.3 9.1 64 390-454 69-132 (152)
250 1qsa_A Protein (soluble lytic 79.0 66 0.0023 33.6 36.4 331 68-432 79-436 (618)
251 3o48_A Mitochondria fission 1 78.6 16 0.00055 29.2 9.1 73 335-409 36-111 (134)
252 2p58_C Putative type III secre 77.4 13 0.00043 27.9 7.4 85 319-412 22-106 (116)
253 2uwj_G Type III export protein 75.0 24 0.00081 26.4 8.3 79 39-122 20-98 (115)
254 1v54_E Cytochrome C oxidase po 74.0 26 0.00088 26.4 9.2 46 287-332 28-73 (109)
255 2y69_E Cytochrome C oxidase su 67.2 47 0.0016 26.5 9.3 48 286-333 70-117 (152)
256 3ffl_A Anaphase-promoting comp 64.7 41 0.0014 28.0 8.9 60 96-155 24-91 (167)
257 3ffl_A Anaphase-promoting comp 63.8 37 0.0013 28.3 8.4 58 239-296 25-90 (167)
258 1zbp_A Hypothetical protein VP 63.2 43 0.0015 30.5 9.4 54 137-191 7-60 (273)
259 1y8m_A FIS1; mitochondria, unk 62.2 61 0.0021 26.2 13.0 80 371-452 36-118 (144)
260 3esl_A Checkpoint serine/threo 60.9 19 0.00064 31.2 6.4 62 26-87 77-141 (202)
261 4b4t_R RPN7, 26S proteasome re 60.0 42 0.0014 33.3 10.0 12 283-294 222-233 (429)
262 3esl_A Checkpoint serine/threo 59.6 86 0.0029 27.1 11.4 56 105-160 92-148 (202)
263 1y8m_A FIS1; mitochondria, unk 59.2 70 0.0024 25.9 14.2 72 336-409 36-110 (144)
264 4b4t_R RPN7, 26S proteasome re 59.1 1.2E+02 0.004 30.0 13.1 61 236-296 133-195 (429)
265 3ltm_A Alpha-REP4; protein eng 57.2 92 0.0032 26.7 19.6 18 160-177 93-110 (211)
266 3lpz_A GET4 (YOR164C homolog); 56.0 1.4E+02 0.0047 28.3 21.3 134 25-185 12-159 (336)
267 2wpv_A GET4, UPF0363 protein Y 55.9 1.3E+02 0.0045 28.1 19.5 135 25-186 13-158 (312)
268 1zbp_A Hypothetical protein VP 55.9 54 0.0018 29.8 8.8 113 100-225 5-128 (273)
269 3lvg_A Clathrin heavy chain 1; 55.7 0.0087 3E-07 59.2 -16.9 245 93-365 55-317 (624)
270 4a1g_A Mitotic checkpoint seri 51.0 19 0.00065 29.6 4.6 39 90-128 99-137 (152)
271 3lvg_A Clathrin heavy chain 1; 49.0 0.043 1.5E-06 54.4 -13.3 197 67-282 60-276 (624)
272 3lpz_A GET4 (YOR164C homolog); 46.9 1.9E+02 0.0065 27.3 20.5 135 271-424 37-182 (336)
273 3ltj_A Alpharep-4; protein eng 46.6 1.3E+02 0.0045 25.3 20.4 50 125-178 57-106 (201)
274 2wvi_A Mitotic checkpoint seri 44.0 36 0.0012 28.3 5.3 38 91-128 95-132 (164)
275 3eiq_C Programmed cell death p 42.4 2.3E+02 0.008 27.0 12.2 77 376-453 219-297 (358)
276 4aez_C MAD3, mitotic spindle c 41.6 28 0.00095 30.7 4.4 59 26-86 117-175 (223)
277 2r9g_A AAA ATPase, central reg 41.4 1.7E+02 0.0058 25.2 9.0 17 283-299 28-44 (204)
278 4a1g_A Mitotic checkpoint seri 40.1 1.5E+02 0.0052 24.2 10.5 50 111-160 84-134 (152)
279 1k1a_A B-cell lymphoma 3-encod 39.0 39 0.0013 29.7 5.4 24 135-158 14-37 (241)
280 2d2s_A Exocyst complex compone 38.3 2E+02 0.007 25.5 9.8 27 269-295 91-117 (235)
281 1wdy_A 2-5A-dependent ribonucl 37.6 29 0.00098 31.6 4.4 12 324-335 199-210 (285)
282 3txn_A 26S proteasome regulato 37.3 3E+02 0.01 26.7 21.5 27 198-224 20-46 (394)
283 3eiq_C Programmed cell death p 37.0 2.8E+02 0.0097 26.4 11.4 25 272-296 220-244 (358)
284 1k1a_A B-cell lymphoma 3-encod 37.0 57 0.0019 28.6 6.2 86 99-188 13-102 (241)
285 2d2s_A Exocyst complex compone 36.8 2E+02 0.0069 25.5 9.5 89 98-189 24-118 (235)
286 3bge_A Predicted ATPase; struc 34.6 1.7E+02 0.0059 25.0 8.0 35 282-316 20-54 (201)
287 2p1h_A APAF-1, apoptotic prote 32.5 1.4E+02 0.0048 21.8 6.6 63 44-111 24-86 (94)
288 3ctd_A Putative ATPase, AAA fa 32.3 2.2E+02 0.0077 24.6 8.4 33 283-315 49-81 (213)
289 2wvi_A Mitotic checkpoint seri 32.1 2.2E+02 0.0074 23.6 11.1 51 111-161 79-130 (164)
290 4gq2_M Nucleoporin NUP120; bet 31.6 2.3E+02 0.008 31.3 11.0 49 128-176 898-950 (950)
291 2nsz_A Programmed cell death p 31.4 1.2E+02 0.0042 23.8 6.5 24 273-296 11-34 (129)
292 2wpv_A GET4, UPF0363 protein Y 30.6 3.3E+02 0.011 25.3 22.0 115 129-258 35-158 (312)
293 1oai_A Nuclear RNA export fact 30.2 93 0.0032 20.6 4.6 29 33-61 27-56 (59)
294 4aez_C MAD3, mitotic spindle c 30.0 2.8E+02 0.0097 24.3 9.0 51 145-195 132-183 (223)
295 1wdy_A 2-5A-dependent ribonucl 29.8 71 0.0024 28.8 5.7 23 386-408 191-213 (285)
296 4g8k_A 2-5A-dependent ribonucl 29.6 1.2E+02 0.0041 28.4 7.4 105 325-444 220-329 (337)
297 1qsa_A Protein (soluble lytic 29.5 5E+02 0.017 27.0 33.5 354 22-411 99-487 (618)
298 2ion_A PDCD4, programmed cell 26.3 2.5E+02 0.0085 22.8 7.6 23 201-223 13-35 (152)
299 1n11_A Ankyrin; clathrin, BAND 24.8 66 0.0022 31.6 4.7 14 172-185 120-133 (437)
300 2ion_A PDCD4, programmed cell 24.3 1.1E+02 0.0038 25.0 5.1 23 273-295 13-35 (152)
301 3kae_A CDC27, possible protein 23.5 2.9E+02 0.0099 23.1 7.2 29 409-437 114-142 (242)
302 2nsz_A Programmed cell death p 22.7 2.8E+02 0.0095 21.7 9.0 23 201-223 11-33 (129)
303 3hra_A Ankyrin repeat family p 22.7 60 0.002 27.5 3.5 15 394-408 158-172 (201)
304 1oyz_A Hypothetical protein YI 22.1 4.2E+02 0.014 23.6 23.4 236 124-386 34-279 (280)
305 2xig_A Ferric uptake regulatio 21.8 3E+02 0.01 22.1 7.4 67 286-353 9-75 (150)
306 1mzb_A Ferric uptake regulatio 21.7 3E+02 0.01 21.7 7.2 60 116-176 7-67 (136)
307 3t8k_A Uncharacterized protein 21.6 2.7E+02 0.0091 23.3 7.4 28 134-161 42-69 (186)
308 1bpo_A Protein (clathrin); cla 21.0 6.2E+02 0.021 25.1 12.4 140 106-260 343-482 (494)
309 2yru_A Steroid receptor RNA ac 20.6 1.5E+02 0.0052 22.9 4.9 42 396-437 48-89 (118)
310 4fke_A Aminopeptidase N; zinc 20.4 8.7E+02 0.03 26.6 15.7 169 161-334 685-861 (909)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-35 Score=320.64 Aligned_cols=416 Identities=8% Similarity=-0.041 Sum_probs=357.5
Q ss_pred hhHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhC--CCCCHHHHHHHHH
Q 006981 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--PNPTLSTFNMLMS 100 (623)
Q Consensus 27 ~~~~~~~~l~----~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~li~ 100 (623)
++...|+.++ +.|++++|+.+|++|.+.. | +......++..+...|++++|+.+|+++ .+++..+++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--G-NPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--C-CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--C-CchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHH
Confidence 4566666665 7899999999999999765 3 3345566888899999999999999998 5789999999999
Q ss_pred HHHcCCChHHHHHHHHHHH-Hc--------------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006981 101 VCASSKDSEGAFQVLRLVQ-EA--------------GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165 (623)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~-~~--------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 165 (623)
+|.+.|++++|.++|+++. .. +.+++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+...+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHH
Confidence 9999999999999998532 11 223458899999999999999999999999998864 2234443
Q ss_pred HH--------------------------------------HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006981 166 GA--------------------------------------LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (623)
Q Consensus 166 ~~--------------------------------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 207 (623)
.. ++..|.+.|++++|.++|+++.+. +++..+|+.++.+|
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 33 355667889999999999999865 58999999999999
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006981 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (623)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (623)
.+.|++++|.++|+++.... +.+..+++.++.+|.+.|++++|..+|+.+.+.. +.+..+|+.++..|.+.|++++
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEID---PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC---TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHHcC---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 99999999999999998642 3466789999999999999999999999998765 6778999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (623)
Q Consensus 288 A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (623)
|.++|+++.+.... +..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+++.++.+|.+.|++++|.++|+++.+
T Consensus 392 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999876432 68899999999999999999999999998875 45788999999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006981 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCPN--TITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441 (623)
Q Consensus 368 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~ 441 (623)
.. +.+..+|+.++..|.+.|++++|+++|+++.+. +..|+ ..+|..+..+|.+.|++++|.++++++.+.+ .
T Consensus 470 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p 547 (597)
T 2xpi_A 470 LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-T 547 (597)
T ss_dssp HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C
Confidence 64 357899999999999999999999999999875 66887 7899999999999999999999999998754 3
Q ss_pred CCHHHHHHHHHHHHh
Q 006981 442 PNLVMFKCIIGMCSR 456 (623)
Q Consensus 442 p~~~~~~~li~~~~~ 456 (623)
.+..+|..+..+|.+
T Consensus 548 ~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 548 NDANVHTAIALVYLH 562 (597)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHH
Confidence 477888888888654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-33 Score=303.51 Aligned_cols=403 Identities=10% Similarity=0.014 Sum_probs=350.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCC-------------------CH
Q 006981 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP-------------------TL 92 (623)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------------~~ 92 (623)
...+.+.|++++|+.+|+++... +.+......++..+.+.|++++|+++|+++.+. +.
T Consensus 124 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (597)
T 2xpi_A 124 AQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEA 200 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhH
Confidence 34455899999999999988643 455667778888899999999999999965443 48
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHH--------------------------------------H
Q 006981 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL--------------------------------------I 134 (623)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l--------------------------------------i 134 (623)
.+|+.++.+|.+.|++++|+++|++|.+.+ +.+...+..+ +
T Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 279 (597)
T 2xpi_A 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHH
Confidence 899999999999999999999999999875 3334443333 5
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 006981 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214 (623)
Q Consensus 135 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 214 (623)
..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+++.++.++.+.|+.+
T Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 356 (597)
T 2xpi_A 280 NKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKN 356 (597)
T ss_dssp CTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHH
T ss_pred HHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHH
Confidence 5666889999999999999865 5899999999999999999999999999999765 447889999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (623)
Q Consensus 215 ~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 294 (623)
+|.++++++... .+.+..+++.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|+++|++
T Consensus 357 ~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 357 KLYLISNDLVDR---HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp HHHHHHHHHHHH---CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhh---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999863 25578899999999999999999999999998865 56788999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC
Q 006981 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI----KL 370 (623)
Q Consensus 295 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~ 370 (623)
+.+.+. .+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +.
T Consensus 433 ~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 433 AARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp HHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 998754 378899999999999999999999999998875 457899999999999999999999999999775 55
Q ss_pred CCC--HHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHH
Q 006981 371 KPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL-VMF 447 (623)
Q Consensus 371 ~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~ 447 (623)
.|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|.+.|++++|.+.|+++.+. .|+. ..+
T Consensus 511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~ 587 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMAS 587 (597)
T ss_dssp CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHH
Confidence 777 7899999999999999999999999998864 448899999999999999999999999999984 4543 344
Q ss_pred HHH
Q 006981 448 KCI 450 (623)
Q Consensus 448 ~~l 450 (623)
..+
T Consensus 588 ~~l 590 (597)
T 2xpi_A 588 DLL 590 (597)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.3e-30 Score=270.77 Aligned_cols=202 Identities=16% Similarity=0.247 Sum_probs=115.6
Q ss_pred HHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------HHHH
Q 006981 254 REVYKMIHKYNIKGTPE-VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK---------VEAA 323 (623)
Q Consensus 254 ~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~---------~~~a 323 (623)
..+.+.+.+.+....+. +++.+|++|++.|++++|+++|++|.+.|+.||..||+++|.+|++.+. +++|
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 33344444444433332 3555556666666666666666666655666666666666665554433 4556
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHC
Q 006981 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (623)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 403 (623)
.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006981 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (623)
Q Consensus 404 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 455 (623)
|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.+++.+.
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 6666666666666666666666666666666666666666666666665543
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=5.4e-30 Score=266.17 Aligned_cols=188 Identities=18% Similarity=0.279 Sum_probs=157.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHhCCCCCCHH
Q 006981 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD---------WEFACSVYDDMTKKGVIPDEV 305 (623)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~~l~~~m~~~~~~p~~~ 305 (623)
..++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. .++|.++|++|...|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 34566667777777777777777777777777777777777776665543 678888999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006981 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (623)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (623)
||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006981 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422 (623)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 422 (623)
+.|+.++|.++|++|.+.|+.|+..||+.++..++..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999988999999999888887653
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=3e-26 Score=233.63 Aligned_cols=377 Identities=12% Similarity=0.044 Sum_probs=258.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHcCCCh
Q 006981 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDS 108 (623)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~ 108 (623)
...+.+.|++++|.+.++++.+.. |.+......+...+...|++++|..+++.. .+.+..+|..+..++.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 345668888888888888888776 566666666666777777777777777654 245667777777777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (623)
++|+..|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777777653 4445667777777777777777777777777653 224455666777777777777777777777
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 006981 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268 (623)
Q Consensus 189 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 268 (623)
.+.. +.+..+|..+...+.+.|++++|...|+++.... +.+...+..+...+...|++++|...|++..+.. +.+
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 6653 3346677777777777777777777777776531 2335566667777777777777777777776654 445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (623)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 348 (623)
..++..+...|.+.|++++|.+.|+++.+.+.. +..++..+...+.+.|++++|...++++.+.. +.+..+++.+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 667777777777777777777777777765432 45566777777777777777777777776653 4456677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 006981 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERK 422 (623)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~ 422 (623)
+.+.|++++|...++++.+.. +.+..+|..+...|.+.|++++|++.|+++.+. .| +...|..+...+...
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHc
Confidence 777777777777777776543 234566777777777777777777777777653 44 344455444444433
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=3.4e-25 Score=225.80 Aligned_cols=362 Identities=13% Similarity=0.077 Sum_probs=316.7
Q ss_pred HHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 006981 69 NVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145 (623)
Q Consensus 69 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 145 (623)
..+.+.|++++|.+.|+.+. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 34556788999999998753 5567778888889999999999999999998875 6788999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 006981 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (623)
Q Consensus 146 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (623)
|.+.|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|.++..
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999998864 4456789999999999999999999999998763 33455677788889999999999999999987
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 006981 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305 (623)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 305 (623)
.. +.+..++..+...+.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|...|++....... +..
T Consensus 164 ~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 238 (388)
T 1w3b_A 164 TQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAV 238 (388)
T ss_dssp HC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHH
T ss_pred hC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHH
Confidence 42 3457889999999999999999999999999876 667889999999999999999999999999876433 678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006981 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (623)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (623)
++..+...+.+.|++++|...++++.+.. +.+..++..+...|.+.|++++|...|+++.+.. +.+..+|+.+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 89999999999999999999999999875 4467889999999999999999999999998764 467899999999999
Q ss_pred cCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006981 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443 (623)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~ 443 (623)
+.|++++|.+.++++.+. .+.+..++..+..++.+.|++++|...|+++.+ +.|+
T Consensus 317 ~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~ 371 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPT 371 (388)
T ss_dssp TTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTT
T ss_pred HcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 999999999999999875 234678899999999999999999999999987 4554
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=2.5e-21 Score=201.22 Aligned_cols=332 Identities=11% Similarity=0.026 Sum_probs=240.2
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (623)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (623)
.++..|..+...+.+.|++++|+.+|+.+.+.. +.+..++..+..++...|++++|...|+++.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 456677777778888888888888888877654 5567777888888888888888888888877764 34577777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHH------------HHHHccCCHHHHHHHHHHHhhCCCCCCCCH
Q 006981 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDR---VVFNALI------------TACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234 (623)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li------------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 234 (623)
.+|.+.|++++|...|+++.+.. +.+. ..+..+. ..+.+.|++++|...|+++... .+.+.
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~ 177 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV---CVWDA 177 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCh
Confidence 88888888888888888887653 2223 4444443 3377788888888888887753 23456
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH----
Q 006981 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL---- 310 (623)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l---- 310 (623)
.++..+..+|.+.|++++|...|+.+.+.+ +.+..+|..+...|.+.|++++|...|+++...... +...+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~ 255 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHH
Confidence 777788888888888888888888887764 556778888888888888888888888888765322 33444433
Q ss_pred --------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 006981 311 --------IDFAGHAGKVEAAFEILQEAKNQGISVG-----IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377 (623)
Q Consensus 311 --------i~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 377 (623)
...+.+.|++++|...++.+.+.. |+ ..++..+..++.+.|++++|...++++.+.. +.+...|
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~ 332 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHH
Confidence 677888888888888888887753 33 3467778888888888888888888876543 3467788
Q ss_pred HHHHHHHHcCCChhhHHHHHHHHHHCCCCCC-HHHHHHHH------------HHHHhcC-----CHHHHHHHHHH
Q 006981 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILL------------VACERKD-----DVEVGLMLLSQ 434 (623)
Q Consensus 378 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll------------~a~~~~g-----~~~~a~~~~~~ 434 (623)
..+..+|...|++++|...|+++.+ +.|+ ...+..+. ..|...| +.+++.+.+++
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 8888888888888888888888876 3554 44444444 2234444 56677777776
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=5.2e-21 Score=198.84 Aligned_cols=326 Identities=13% Similarity=0.053 Sum_probs=256.5
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (623)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 190 (623)
+...+....... +.+...+..+...+.+.|++++|..+|+++.+.. +.+..+|..+..+|.+.|++++|+..|+++.+
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 334444444432 5567788899999999999999999999988764 45788899999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCH----HHHHHH------------HHHHHHcCChHHHH
Q 006981 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH----ITIGAL------------MKACANAGQVDRAR 254 (623)
Q Consensus 191 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~----~~~~~l------------l~~~~~~g~~~~A~ 254 (623)
.+ +.+..++..+..+|.+.|++++|.+.|+++... .|+. ..+..+ ...+.+.|++++|.
T Consensus 89 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 89 LK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS----NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 64 446788889999999999999999999998864 4443 455544 44488999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006981 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (623)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (623)
..|+.+.+.. +.+..++..+...|.+.|++++|.+.|+++.+... .+..++..+...|...|++++|...++.+.+..
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999998875 66788899999999999999999999999887643 367889999999999999999999999988764
Q ss_pred CCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHcCCChhhHHHHH
Q 006981 335 ISVGIISYSSL------------MGACSNAKNWQKALELYEHMKSIKLKPT-----VSTMNALITALCDGDQLPKTMEVL 397 (623)
Q Consensus 335 ~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~l~ 397 (623)
+.+...+..+ ...|.+.|++++|...|+++.+.. |+ ...|..+...+.+.|++++|+..+
T Consensus 242 -p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 318 (450)
T 2y4t_A 242 -QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVC 318 (450)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3344455444 788999999999999999988743 44 457888899999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 006981 398 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL-VMFKCII 451 (623)
Q Consensus 398 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~li 451 (623)
+++.+.. +.+..+|..+..+|...|++++|...++++.+ +.|+. ..+..+-
T Consensus 319 ~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 319 SEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 9988752 33688899999999999999999999999987 45543 3344433
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4e-21 Score=203.28 Aligned_cols=404 Identities=10% Similarity=0.015 Sum_probs=311.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcC
Q 006981 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASS 105 (623)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 105 (623)
....+.+.+.|++++|+..|+++.+.+ | +...+..++..+...|++++|+..|+++. +.+..+|..+..++.+.
T Consensus 10 ~~~g~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 10 KDKGNQFFRNKKYDDAIKYYNWALELK--E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC--c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 344566779999999999999999987 4 56677778888888999999999998753 56778999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC----------------------------
Q 006981 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG---------------------------- 157 (623)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------------------- 157 (623)
|++++|...|+.+.+.+ +++......++..+.+......+.+.+..+...+
T Consensus 87 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred hhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 99999999999999876 4454455555554444333333322221111000
Q ss_pred -------C---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCC--------CCCHHHHHHHHH
Q 006981 158 -------I---------EPNVHTYGALIDGCAK---AGQVAKAFGAYGIMRS-----KNV--------KPDRVVFNALIT 205 (623)
Q Consensus 158 -------~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~p~~~~~~~li~ 205 (623)
. +.+...+..+...+.. .|++++|...|+++.+ ..- +.+..++..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 0 1113444444444444 8999999999999887 311 223557778888
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 006981 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285 (623)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 285 (623)
.+...|++++|...|+++... .|+..++..+...+...|++++|...++.+.+.. +.+..++..+...|...|++
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIEL----FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHCCCHHHHHHHHHHHHhh----CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 999999999999999998864 3447788888999999999999999999998876 55678899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (623)
Q Consensus 286 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (623)
++|...|++..+.... +...+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...++++
T Consensus 321 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999887544 56788888889999999999999999988764 345778889999999999999999999988
Q ss_pred HhCCCC-CC----HHHHHHHHHHHHc---CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 366 KSIKLK-PT----VSTMNALITALCD---GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 366 ~~~~~~-~~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
.+.... ++ ...|..+...+.. .|++++|.+.|+++.+.. +.+..++..+...+.+.|++++|...++++.+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 753211 11 3488889999999 999999999999988753 33677888899999999999999999999987
Q ss_pred CCCCCCHHH
Q 006981 438 DGVIPNLVM 446 (623)
Q Consensus 438 ~g~~p~~~~ 446 (623)
. .|+...
T Consensus 478 ~--~~~~~~ 484 (514)
T 2gw1_A 478 L--ARTMEE 484 (514)
T ss_dssp H--CSSHHH
T ss_pred h--ccccHH
Confidence 4 455433
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.5e-20 Score=198.89 Aligned_cols=373 Identities=6% Similarity=-0.036 Sum_probs=289.3
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHc
Q 006981 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCAS 104 (623)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 104 (623)
.......+.+.|++++|++.|+++.+.+ |.+...+..++..+...|++++|...|+++. +++......++..+..
T Consensus 42 ~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (514)
T 2gw1_A 42 YSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLN 119 (514)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHH
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 3334455668999999999999999987 6777788888899999999999999998753 3444444444444433
Q ss_pred CCChHHHHHHHHHHHHc-----------------------------------CC---------CCCHHHHHHHHHHHHH-
Q 006981 105 SKDSEGAFQVLRLVQEA-----------------------------------GL---------KADCKLYTTLITTCAK- 139 (623)
Q Consensus 105 ~~~~~~A~~~~~~m~~~-----------------------------------g~---------~~~~~~~~~li~~~~~- 139 (623)
......+.+.+..+... .. +.+...+......+..
T Consensus 120 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (514)
T 2gw1_A 120 KQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYK 199 (514)
T ss_dssp HHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 22222222222111100 00 1114444444444444
Q ss_pred --cCChhHHHHHHHHHHH-----CCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006981 140 --SGKVDAMFEVFHEMVN-----AGI--------EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (623)
Q Consensus 140 --~g~~~~A~~~~~~m~~-----~g~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 204 (623)
.|++++|...|+++.+ ..- +.+..++..+...+...|++++|...|+++.+.. |+..++..+.
T Consensus 200 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~ 277 (514)
T 2gw1_A 200 RSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMA 277 (514)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHH
Confidence 8999999999999987 311 2245678889999999999999999999998874 3488888999
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 006981 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (623)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 284 (623)
..+...|++++|...++++.... +.+..++..+...+...|++++|...|+.+.+.. +.+..++..+...|.+.|+
T Consensus 278 ~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 353 (514)
T 2gw1_A 278 LIMADRNDSTEYYNYFDKALKLD---SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENK 353 (514)
T ss_dssp HHHHTSSCCTTGGGHHHHHHTTC---TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTC
T ss_pred HHHHHCCCHHHHHHHHHHHhhcC---cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCC
Confidence 99999999999999999998642 4456788899999999999999999999998876 5567899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHh---cCCHH
Q 006981 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VG----IISYSSLMGACSN---AKNWQ 356 (623)
Q Consensus 285 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~---~g~~~ 356 (623)
+++|...++++.+.... +...+..+...+...|++++|...+..+.+.... ++ ..++..+...|.+ .|+++
T Consensus 354 ~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 432 (514)
T 2gw1_A 354 FDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFI 432 (514)
T ss_dssp HHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHH
T ss_pred HHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHH
Confidence 99999999999876433 5678888999999999999999999998765311 11 3488999999999 99999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHH
Q 006981 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412 (623)
Q Consensus 357 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 412 (623)
+|...|++..+.. +.+..+|..+...|.+.|++++|.+.|++..+. .|+....
T Consensus 433 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~ 485 (514)
T 2gw1_A 433 EATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTMEEK 485 (514)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccHHH
Confidence 9999999988754 346788999999999999999999999999885 5665443
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=7.1e-20 Score=194.88 Aligned_cols=392 Identities=12% Similarity=0.047 Sum_probs=291.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCC
Q 006981 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKD 107 (623)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~ 107 (623)
..+.+.+.|++++|++.|+++.+.+ |.+...+..++..+...|++++|++.|+++. +.+..+|..+...+...|+
T Consensus 31 ~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 108 (537)
T 3fp2_A 31 RGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGN 108 (537)
T ss_dssp HHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCC
Confidence 3445569999999999999999987 6778888888888999999999999998764 5678899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC------CCCCCHH------------------
Q 006981 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------GIEPNVH------------------ 163 (623)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~~~~------------------ 163 (623)
+++|+..|+.+ .. .|+. ....+..+...+....|...++.+... ...|+..
T Consensus 109 ~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 109 FTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 99999999633 22 2322 222344555556667788888877542 1112222
Q ss_pred ------------HHHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHccCCHHHH
Q 006981 164 ------------TYGALIDGCAK--------AGQVAKAFGAYGIMRSKNVKPD-------RVVFNALITACGQSGAVDRA 216 (623)
Q Consensus 164 ------------~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~-------~~~~~~li~~~~~~g~~~~A 216 (623)
....+...+.. .|++++|..+|+++.+.. +.+ ..++..+...+...|++++|
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 12222222211 247888999999888763 222 23466666778888999999
Q ss_pred HHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (623)
Q Consensus 217 ~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (623)
.+.+.+.... .|+..++..+...+...|++++|...|+.+.+.. +.+..+|..+...+...|++++|...|++..
T Consensus 263 ~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 263 QVLLQESINL----HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHH----CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhc----CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999998764 4667788888888899999999999999988876 5678889999999999999999999999988
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CC
Q 006981 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-----LK 371 (623)
Q Consensus 297 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~ 371 (623)
+.... +...+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+.. ..
T Consensus 338 ~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 415 (537)
T 3fp2_A 338 SLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH 415 (537)
T ss_dssp HHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH
Confidence 76533 45778888889999999999999999988764 4456788888999999999999999998876532 11
Q ss_pred CCHHHHHHHHHHHHcC----------CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 372 PTVSTMNALITALCDG----------DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (623)
Q Consensus 372 ~~~~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (623)
.....+..+...+.+. |++++|...|+++.+.. +.+..++..+...+.+.|++++|.+.|+++.+.
T Consensus 416 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp STTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 1223344455667777 99999999999988752 336778888889999999999999999998874
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=1.3e-17 Score=167.02 Aligned_cols=313 Identities=11% Similarity=0.043 Sum_probs=190.7
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (623)
|+..+..+...+...|++++|+..|+.+.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45567777788888888888888888888765 5567788888888888888888888888887763 336678888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHH------------HHHHHccCCHHHHHHHHHHHhhCCCCCCCCH
Q 006981 171 GCAKAGQVAKAFGAYGIMRSKNVKP----DRVVFNAL------------ITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234 (623)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 234 (623)
.+.+.|++++|...|++..+. .| +...+..+ ...+...|++++|.+.++++.... +.+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~ 154 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC---VWDA 154 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCH
T ss_pred HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCch
Confidence 888888888888888888765 33 33333333 344555555555555555554421 2234
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006981 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (623)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 314 (623)
..+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|++..+.... +...+..+...
T Consensus 155 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~- 231 (359)
T 3ieg_A 155 ELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV- 231 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHH-
Confidence 445555555555555555555555555443 344455555555555555555555555555443211 11111111000
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCCh
Q 006981 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV----STMNALITALCDGDQL 390 (623)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~ 390 (623)
. .......+...+.+.|++++|...+++..+.... +. ..+..+...+.+.|++
T Consensus 232 ----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 232 ----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp ----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCH
T ss_pred ----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCH
Confidence 0 0011112345566777777777777766654311 22 2234456667777777
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 391 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
++|++.+++..+.. +.+..++..+...+...|++++|...|+++.+
T Consensus 289 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 289 VEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777777776642 22566677777777777777777777777766
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=3e-17 Score=164.43 Aligned_cols=313 Identities=12% Similarity=0.046 Sum_probs=205.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006981 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (623)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 205 (623)
|+..+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34567777888888888888888888887764 4467788888888888888888888888887653 335677888888
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCCCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 006981 206 ACGQSGAVDRAFDVLAEMNAEVHPVDP----DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (623)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 281 (623)
.+...|++++|...|.++... .| +...+..+...+. ...+..+...+..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS----NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFD 132 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhc----CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
Confidence 888888888888888888753 34 2223333311000 0112223445555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006981 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361 (623)
Q Consensus 282 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 361 (623)
.|++++|.+.++++.+.... +...+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|...
T Consensus 133 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56666666666655554322 44555555555666666666666666655543 33455566666666666666666666
Q ss_pred HHHHHhCCCCCCHHHHH------------HHHHHHHcCCChhhHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHhcCC
Q 006981 362 YEHMKSIKLKPTVSTMN------------ALITALCDGDQLPKTMEVLSDMKSLGLCPN-T----ITYSILLVACERKDD 424 (623)
Q Consensus 362 ~~~m~~~~~~~~~~~~~------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~ 424 (623)
|++..+.. +.+...+. .+...+.+.|++++|.+.++++.+. .|+ . ..+..+..++.+.|+
T Consensus 211 ~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 211 VRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccC
Confidence 66655432 12222222 3466789999999999999999885 344 3 234557788999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cHHHHHHhhHhhhhccC
Q 006981 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNS 473 (623)
Q Consensus 425 ~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~ 473 (623)
+++|...++++.+.. ..+...+..+..++.+ ++++|....+.....++
T Consensus 288 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 288 PVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 999999999998752 2356667777776654 77888777665554433
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=1.5e-17 Score=176.91 Aligned_cols=388 Identities=11% Similarity=0.032 Sum_probs=278.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006981 62 VYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138 (623)
Q Consensus 62 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 138 (623)
......+..+...|++++|+..|+++. +.+..+|..+..++.+.|++++|++.++.+.+.+ +.+..++..+..++.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 344555666777788888988888753 5678888888888999999999999999888875 556788888888999
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHH-------------
Q 006981 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK------NVKPDRVV------------- 199 (623)
Q Consensus 139 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~------------- 199 (623)
..|++++|.+.|+.+ .. .|+ ..+..+..+...+....|...++++... ...|+...
T Consensus 105 ~~g~~~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 999999999988633 22 222 2233344555666667788888877543 11222221
Q ss_pred -----------------HHHHHHHHHc--------cCCHHHHHHHHHHHhhCCCCCCCC--------HHHHHHHHHHHHH
Q 006981 200 -----------------FNALITACGQ--------SGAVDRAFDVLAEMNAEVHPVDPD--------HITIGALMKACAN 246 (623)
Q Consensus 200 -----------------~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~~~~~--------~~~~~~ll~~~~~ 246 (623)
...+...+.. .|++++|..+++++... .|+ ..++..+...+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~----~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA----NTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH----CCCcchhhHHHHHHHHHHHHHHHh
Confidence 1222222221 14788999999998864 333 2346667778888
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006981 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (623)
Q Consensus 247 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 326 (623)
.|++++|...|+.+.+.. |+..++..+...|...|++++|...|+++.+.... +..++..+...+...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999999998864 44788999999999999999999999999876543 677888999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCC--
Q 006981 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-- 404 (623)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-- 404 (623)
++.+.+.. +.+...+..+...|.+.|++++|...++++.+.. +.+...|..+...+...|++++|.+.|+++.+..
T Consensus 333 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 99998865 3456788889999999999999999999988764 3456788889999999999999999999987532
Q ss_pred ---CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cHHHHHHhh
Q 006981 405 ---LCPNTITYSILLVACERK----------DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLN 465 (623)
Q Consensus 405 ---~~p~~~t~~~ll~a~~~~----------g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~ 465 (623)
.......+......+... |++++|...++++.+.. ..+...+..+..++.+ ++++|....
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 111222344445667777 99999999999998742 2345556666666543 444444433
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=3.6e-17 Score=161.93 Aligned_cols=280 Identities=12% Similarity=0.019 Sum_probs=122.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006981 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (623)
Q Consensus 130 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (623)
+..+...+...|++++|.++|+++.+.. +.+...+..++..+.+.|++++|...++++.+.. +.+...|..+...+..
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLM 102 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 3334444444444444444444444332 1222333333344444444444444444444331 1223344444444444
Q ss_pred cC-CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006981 210 SG-AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (623)
Q Consensus 210 ~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 288 (623)
.| ++++|.+.|++..... +.+...+..+...+...|++++|...|+++.+.. +.+..++..+...|...|++++|
T Consensus 103 ~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLE---KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTC---TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred hhhhHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHH
Confidence 44 4444444444443321 1123334444444444444444444444444432 22233344444444444444444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006981 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG--------ISVGIISYSSLMGACSNAKNWQKALE 360 (623)
Q Consensus 289 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~ 360 (623)
...+++..+.... +...+..+...+...|++++|...++++.+.. .+....++..+...|.+.|++++|..
T Consensus 179 ~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 179 ERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4444444443221 33444444444444455555544444443321 02223455555555555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 006981 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVAC 419 (623)
Q Consensus 361 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~ 419 (623)
.|++..+.. +.+...|..+...|.+.|++++|.+.|++..+. .| +...+..+..++
T Consensus 258 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 258 YHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHH
T ss_pred HHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHH
Confidence 555554432 123445555555555555555555555555442 23 334444444444
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=6.7e-17 Score=159.96 Aligned_cols=293 Identities=14% Similarity=0.070 Sum_probs=242.5
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006981 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (623)
Q Consensus 89 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 168 (623)
+.+...+..+...+...|++++|+++++.+.+.. +.+...+..++..+...|++++|..+++++.+.. +.+..+|..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3456667788888888999999999999998875 4556677778888899999999999999998864 4467888999
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc
Q 006981 169 IDGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (623)
Q Consensus 169 i~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~ 247 (623)
...+...| ++++|...|++..+.. +.+...|..+...+...|++++|.+.+.++.... +.+...+..+...|...
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM---KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHH
Confidence 99999999 9999999999998764 4457788899999999999999999999988642 33456777788999999
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCC
Q 006981 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG--------VIPDEVFLSALIDFAGHAGK 319 (623)
Q Consensus 248 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~--------~~p~~~~~~~li~~~~~~g~ 319 (623)
|++++|...++.+.+.. +.+..++..+...+...|++++|...+++..+.. ...+..++..+...+...|+
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 99999999999998876 6678899999999999999999999999887631 12345788889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HcCCCh
Q 006981 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL-CDGDQL 390 (623)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~~ 390 (623)
+++|...++...+.. +.+..++..+...|.+.|++++|...|++..+.. +.+...+..+..++ ...|+.
T Consensus 252 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 252 YAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 999999999998865 4467889999999999999999999999988764 34677888888877 445543
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=7e-15 Score=154.26 Aligned_cols=365 Identities=11% Similarity=0.006 Sum_probs=298.0
Q ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHhh----hHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHc----CCChHHHHHH
Q 006981 44 CIDLLEDMERKGLLDMDKVYHARFFNVCKS----QKAIKEAFRFFKLVP-NPTLSTFNMLMSVCAS----SKDSEGAFQV 114 (623)
Q Consensus 44 A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~~~~~~A~~~ 114 (623)
++..+....+.| +......++..+.. .++.++|+..|++.. ..+...+..+...|.. .++.++|.+.
T Consensus 26 ~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 26 NLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 345555555544 22333344444444 577889999988654 3567788888888888 8999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 006981 115 LRLVQEAGLKADCKLYTTLITTCAK----SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK----AGQVAKAFGAYG 186 (623)
Q Consensus 115 ~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~ 186 (623)
|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .++.++|++.|+
T Consensus 102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99998865 66778888888888 789999999999998875 67788888888887 789999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHH
Q 006981 187 IMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYK 258 (623)
Q Consensus 187 ~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~ 258 (623)
+..+.| +...+..+...|.. .++.++|.+.|.+.... .+...+..+...|.. .+++++|..+|+
T Consensus 176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-----GDELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 998875 67888888888887 89999999999998763 356677888888886 789999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHH
Q 006981 259 MIHKYNIKGTPEVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA-----GKVEAAFEILQE 329 (623)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~ 329 (623)
+..+.+ +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|... ++.++|...+.+
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 998865 45777888888887 899999999999998775 456677777788777 899999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhhHHHHHHHHHH
Q 006981 330 AKNQGISVGIISYSSLMGACSNAK---NWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKS 402 (623)
Q Consensus 330 ~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~ 402 (623)
..+.+ +...+..+...|.+.| +.++|.+.|++..+. .+...+..+...|.. .+++++|++.|++..+
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 99876 4667788888888766 789999999999885 467888889999988 8999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC
Q 006981 403 LGLCPNTITYSILLVACER----KDDVEVGLMLLSQAKEDGVI 441 (623)
Q Consensus 403 ~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~g~~ 441 (623)
.| +...+..+...+.+ .++.++|...|++..+.|..
T Consensus 396 ~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 396 QG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 65 56777788888887 89999999999999986643
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=2e-15 Score=160.14 Aligned_cols=407 Identities=11% Similarity=0.073 Sum_probs=274.8
Q ss_pred cCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHHHHHHH
Q 006981 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLM 99 (623)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li 99 (623)
|.++..-..... +.+.|++++|+.+|+++.+.. |.+..+...++....+.|++++|..+|++.. .|++..|...+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~ 86 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYL 86 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 444444333333 346899999999999999876 6777777777888888889999999999865 46777888777
Q ss_pred HHH-HcCCChHHHHH----HHHHHHHc-CCCC-CHHHHHHHHHHHHH---------cCChhHHHHHHHHHHHCCCCCCHH
Q 006981 100 SVC-ASSKDSEGAFQ----VLRLVQEA-GLKA-DCKLYTTLITTCAK---------SGKVDAMFEVFHEMVNAGIEPNVH 163 (623)
Q Consensus 100 ~~~-~~~~~~~~A~~----~~~~m~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~~~~~ 163 (623)
... ...|+.+.|.+ +|+..... |..| +...|...+....+ .|+++.|..+|++..+....+...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 543 45677776665 66666543 4433 56777777776655 688999999999988732111123
Q ss_pred HHHHHHHHH-------------HhcCCHHHHHHHHHHH------HhCC---CCCC--------HHHHHHHHHHHHcc---
Q 006981 164 TYGALIDGC-------------AKAGQVAKAFGAYGIM------RSKN---VKPD--------RVVFNALITACGQS--- 210 (623)
Q Consensus 164 ~~~~li~~~-------------~~~g~~~~A~~~~~~m------~~~g---~~p~--------~~~~~~li~~~~~~--- 210 (623)
.|....... .+.+++..|..++.++ .+.. ++|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 444332211 1234566777766652 2221 2343 23455444332221
Q ss_pred -CCH----HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH-------cCChH-------HHHHHHHHHHhcCCCCCHHH
Q 006981 211 -GAV----DRAFDVLAEMNAEVHPVDPDHITIGALMKACAN-------AGQVD-------RAREVYKMIHKYNIKGTPEV 271 (623)
Q Consensus 211 -g~~----~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~ 271 (623)
++. +.+..+|++.... .+.+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~---~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l 323 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLV---LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL 323 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHH
T ss_pred CCcchhHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHH
Confidence 222 3667778877763 23356677777777665 68876 88888888876323556788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H
Q 006981 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD-EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA-C 349 (623)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~ 349 (623)
|..++..+.+.|++++|..+|+++.+.... + ...|...+..+.+.|++++|..+|++..+.. +.+...+...... +
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEY 401 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHH
Confidence 888888888889999999999888875322 3 2477878888888888889999888887753 2233333332222 3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHH
Q 006981 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-LCPN--TITYSILLVACERKDDVE 426 (623)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~--~~t~~~ll~a~~~~g~~~ 426 (623)
...|+.++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.+
T Consensus 402 ~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~ 480 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 480 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHH
T ss_pred HHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 35888889999888776643 2357888888888888889999999998888753 2332 447777777778888888
Q ss_pred HHHHHHHHHHH
Q 006981 427 VGLMLLSQAKE 437 (623)
Q Consensus 427 ~a~~~~~~~~~ 437 (623)
.+..++.++.+
T Consensus 481 ~~~~~~~r~~~ 491 (530)
T 2ooe_A 481 SILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888775
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=1.2e-14 Score=152.37 Aligned_cols=338 Identities=13% Similarity=0.039 Sum_probs=287.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhh----hHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHc----CCCh
Q 006981 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS----QKAIKEAFRFFKLVP-NPTLSTFNMLMSVCAS----SKDS 108 (623)
Q Consensus 38 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~~~~ 108 (623)
.+++++|+..|++..+.| +......++..+.. .++.++|+..|++.. ..+...+..+...+.. .+++
T Consensus 56 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 789999999999999876 23445556666666 788999999998765 4577788888888888 8899
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHH
Q 006981 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAK----SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK----AGQVAK 180 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~ 180 (623)
++|+..|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +..++..|...|.. .++.++
T Consensus 132 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 205 (490)
T 2xm6_A 132 AESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAI 205 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHH
Confidence 99999999998876 57788888888887 789999999999999864 78889999999988 899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH----cCChHH
Q 006981 181 AFGAYGIMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDR 252 (623)
Q Consensus 181 A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~ 252 (623)
|...|++..+.| +...+..+...|.. .++.++|.++|++.... .+...+..+...|.. .++.++
T Consensus 206 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 206 SAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-----GNSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-----TCHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHCCCCCCCCHHH
Confidence 999999998876 56778888888876 78999999999998763 345677778888888 899999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHH
Q 006981 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQT-----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG---KVEAAF 324 (623)
Q Consensus 253 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~ 324 (623)
|...|++..+.+ +...+..+...|... +++++|...|++..+.| +...+..+...|...| +.++|.
T Consensus 278 A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 278 ALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHH
Confidence 999999998765 457888888888887 89999999999999876 4567777777777766 789999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhhHHHH
Q 006981 325 EILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEV 396 (623)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l 396 (623)
+.|++..+.+ +...+..|...|.. .+++++|...|++..+.+ +...+..|...|.+ .++.++|...
T Consensus 352 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 425 (490)
T 2xm6_A 352 EWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAW 425 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999999875 67888899999998 899999999999998854 67788889889988 8999999999
Q ss_pred HHHHHHCCC
Q 006981 397 LSDMKSLGL 405 (623)
Q Consensus 397 ~~~m~~~g~ 405 (623)
|++..+.+.
T Consensus 426 ~~~A~~~~~ 434 (490)
T 2xm6_A 426 FDTASTNDM 434 (490)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHCCC
Confidence 999998763
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=5.1e-17 Score=163.72 Aligned_cols=297 Identities=11% Similarity=-0.013 Sum_probs=159.4
Q ss_pred hHHHHHHHH-HhhhCC---C--C--CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 006981 74 QKAIKEAFR-FFKLVP---N--P--TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145 (623)
Q Consensus 74 ~~~~~~A~~-~~~~~~---~--~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 145 (623)
.|++++|+. .|++.. + | +...+..+...+.+.|++++|+..++.+.+.. +.+..++..+...+.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 356666666 665432 1 1 23456666666777777777777777776654 4456666666677777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 006981 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (623)
Q Consensus 146 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (623)
|.+.|+++.+.. +.+..++..+...|...|++++|...|+++.... +.+...+..+... .. .
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~~-------~-- 178 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------AG-------G-- 178 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC------------------------
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------hh-------h--
Confidence 777777666553 3356666666666667777777777776666543 1112121111000 00 0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006981 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303 (623)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 303 (623)
..+. ..+..+.. +...|++++|...|+++.+.. +. +..++..+...|.+.|++++|...|+++...... +
T Consensus 179 ----~~~~-~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~ 250 (368)
T 1fch_A 179 ----AGLG-PSKRILGS-LLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-D 250 (368)
T ss_dssp ------------CTTHH-HHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred ----hccc-HHHHHHHH-HhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-C
Confidence 0000 01111222 225666667777666666554 22 4566666666666666666666666666654321 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----------CC
Q 006981 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK----------PT 373 (623)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------~~ 373 (623)
...+..+...+...|++++|...++++.+.. +.+..++..+..+|.+.|++++|...|++..+.... ..
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 4556666666666666666666666665543 234555666666666666666666666655432110 01
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHH
Q 006981 374 VSTMNALITALCDGDQLPKTMEVLS 398 (623)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A~~l~~ 398 (623)
..+|..+..+|...|+.++|..+++
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHH
Confidence 4556666666666666666655554
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=4.7e-17 Score=163.96 Aligned_cols=302 Identities=12% Similarity=-0.044 Sum_probs=189.5
Q ss_pred hcCCHHHHHH-HHHHHHHcCCCCC--chHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChHH
Q 006981 37 RQGRISECID-LLEDMERKGLLDM--DKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEG 110 (623)
Q Consensus 37 ~~g~~~~A~~-l~~~m~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~ 110 (623)
..|++++|++ .|++..+.....+ .......++..+...|++++|+..|+++. +.+..+|..+...+...|++++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 4578888888 7776654432111 12334456777788899999999998763 5678899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (623)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 190 (623)
|+..++.+.+.. +.+..++..+...+...|++++|.+.|+++.+.. +.+...+..+... .. .
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~~-------~-- 178 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------AG-------G-- 178 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC------------------------
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------hh-------h--
Confidence 999999999876 5678899999999999999999999999999874 2222222211000 00 0
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHH
Q 006981 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270 (623)
Q Consensus 191 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 270 (623)
..+ ...+..+.. +...|++++|...|.++.... +-.++..++..+...|.+.|++++|...|+++.+.. +.+..
T Consensus 179 --~~~-~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~ 252 (368)
T 1fch_A 179 --AGL-GPSKRILGS-LLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYL 252 (368)
T ss_dssp ----------CTTHH-HHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred --hcc-cHHHHHHHH-HhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHH
Confidence 000 011111112 225566666666666665431 111135566666666666666666666666666554 44556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----------CCCHH
Q 006981 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI----------SVGII 340 (623)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----------~~~~~ 340 (623)
+|..+...+.+.|++++|...|+++.+... .+...+..+...|.+.|++++|...++.+.+... +....
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 331 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhH
Confidence 666666677777777777777766665432 2456666666677777777777777766654321 11256
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 006981 341 SYSSLMGACSNAKNWQKALELYE 363 (623)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~ 363 (623)
+|..+..+|.+.|+.++|..+++
T Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 332 IWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHHHhCChHhHHHhHH
Confidence 77788888888888888777665
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=2.6e-16 Score=158.40 Aligned_cols=266 Identities=11% Similarity=-0.057 Sum_probs=187.0
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (623)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (623)
.+...|..+...+.+.|++++|+..|+.+.+.. +.+..++..+...|.+.|++++|.+.|+++.+.. +.+..+|..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 456678889999999999999999999999875 5678899999999999999999999999998864 44688999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHH
Q 006981 170 DGCAKAGQVAKAFGAYGIMRSKNVKPD-----------RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (623)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 238 (623)
..|.+.|++++|+..|+++.+.. |+ ...+..+...+...|++++|.+.++++.... +-..+..++.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~ 217 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQT 217 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHH
Confidence 99999999999999999988652 22 1222334667777778888888887777642 1112566777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006981 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (623)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (623)
.+...|.+.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|...|++..+.... +..++..+...|.+.|
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCC
Confidence 77777777778888887777777664 556677777777777777777777777777665322 4566677777777777
Q ss_pred CHHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 319 KVEAAFEILQEAKNQGIS-----------VGIISYSSLMGACSNAKNWQKALELY 362 (623)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~ 362 (623)
++++|...++++.+.... .+..+|..+..++...|+.+.+..+.
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 777777777766543200 02344555555555555555554443
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=4.1e-14 Score=150.00 Aligned_cols=396 Identities=10% Similarity=0.065 Sum_probs=281.4
Q ss_pred HHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC
Q 006981 48 LEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124 (623)
Q Consensus 48 ~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 124 (623)
|++..+.+ |.+......++.. .+.|++++|..+|+++. |.+...|..++..+.+.|++++|..+|+++.+. .
T Consensus 2 le~al~~~--P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhC--CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 55666666 5666666556664 55688999999999864 557788999999999999999999999999976 3
Q ss_pred CCHHHHHHHHHHH-HHcCChhHHHH----HHHHHHH-CCCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 006981 125 ADCKLYTTLITTC-AKSGKVDAMFE----VFHEMVN-AGIEP-NVHTYGALIDGCAK---------AGQVAKAFGAYGIM 188 (623)
Q Consensus 125 ~~~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~-~g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m 188 (623)
|+...|...+... ...|+.+.|.+ +|+.... .|..| +...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6877887777533 45677777665 7777654 35443 56788888887655 78999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHH-------------HccCCHHHHHHHHHHH------hhCCC-CCCCC--------HHHHHHH
Q 006981 189 RSKNVKPDRVVFNALITAC-------------GQSGAVDRAFDVLAEM------NAEVH-PVDPD--------HITIGAL 240 (623)
Q Consensus 189 ~~~g~~p~~~~~~~li~~~-------------~~~g~~~~A~~~~~~m------~~~~~-~~~~~--------~~~~~~l 240 (623)
.+....+....|....... .+.+++..|..++... ..... .++|+ ...|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8731111123443322211 1235567777776652 21100 12443 2355555
Q ss_pred HHHHHHc----CCh----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhC
Q 006981 241 MKACANA----GQV----DRAREVYKMIHKYNIKGTPEVYTIAINCCSQ-------TGDWE-------FACSVYDDMTKK 298 (623)
Q Consensus 241 l~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~l~~~m~~~ 298 (623)
+...... ++. +.+..+|++..... +.++..|..++..+.+ .|+++ +|..+|++..+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 5433222 232 37778999988864 6678999999998876 68876 899999998863
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 006981 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI-ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377 (623)
Q Consensus 299 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 377 (623)
-.+-+...|..++..+.+.|++++|..+|+.+.+.. +.+. ..|..++..+.+.|++++|.++|++..+... .+...|
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~ 393 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVY 393 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHH
Confidence 122367889999999999999999999999999863 2233 5899999999999999999999999987532 233333
Q ss_pred HHHHH-HHHcCCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHH
Q 006981 378 NALIT-ALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDG-VIPN--LVMFKCIIG 452 (623)
Q Consensus 378 ~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g-~~p~--~~~~~~li~ 452 (623)
..... .+...|+.++|..+|++..+. .| +...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+.
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~ 471 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 471 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 33222 234689999999999998875 35 67889999999999999999999999999863 3332 335555554
Q ss_pred H
Q 006981 453 M 453 (623)
Q Consensus 453 ~ 453 (623)
.
T Consensus 472 ~ 472 (530)
T 2ooe_A 472 F 472 (530)
T ss_dssp H
T ss_pred H
Confidence 3
No 24
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=3.3e-18 Score=182.23 Aligned_cols=148 Identities=14% Similarity=0.129 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006981 304 EVFLSALIDFAGHAGKVEAAFEILQEAKN---QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380 (623)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 380 (623)
..||+++|++||+.|++++|.++|..|.+ .|+.||..|||+||++|++.|++++|.++|++|.+.|+.||++|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 46888888888888888888888877653 477888888888888888888888888888888888888888888888
Q ss_pred HHHHHcCCCh-hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHH
Q 006981 381 ITALCDGDQL-PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN------LVMFKCIIGM 453 (623)
Q Consensus 381 i~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~------~~~~~~li~~ 453 (623)
|.++++.|+. ++|.++|++|.+.|+.||.+||++++.++.+.+-++.. +++ .-++.|+ ..+..-|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V----rkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV----HKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH----GGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH----HHh-CcccCCCCCCcccccchHHHHHH
Confidence 8888888874 67888888888888888888888888766554333322 222 2245544 3444455666
Q ss_pred HHh
Q 006981 454 CSR 456 (623)
Q Consensus 454 ~~~ 456 (623)
|++
T Consensus 282 ~s~ 284 (1134)
T 3spa_A 282 YAK 284 (1134)
T ss_dssp HCC
T ss_pred Hcc
Confidence 554
No 25
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=7.8e-19 Score=187.04 Aligned_cols=150 Identities=13% Similarity=0.210 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQ---EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~---~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 168 (623)
..+||++|++|++.|++++|.++|+.|. ..|+.||++|||+||++|++.|++++|.++|++|.+.|+.||.+|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999998876 4589999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC------HHHHHHHH
Q 006981 169 IDGCAKAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD------HITIGALM 241 (623)
Q Consensus 169 i~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~~~~~ll 241 (623)
|.++++.|+ .++|.++|++|.+.|+.||.++|++++.++.+.+ +++..+++. .++.|+ ..+...|.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv~---P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKVK---PTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGGC---CCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHhC---cccCCCCCCcccccchHHHH
Confidence 999999998 4789999999999999999999999997766543 333333332 234443 45556677
Q ss_pred HHHHHcC
Q 006981 242 KACANAG 248 (623)
Q Consensus 242 ~~~~~~g 248 (623)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 7777655
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.73 E-value=1.3e-15 Score=150.47 Aligned_cols=279 Identities=10% Similarity=-0.019 Sum_probs=162.7
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (623)
+...|..+...+...|++++|..+++.+.+.. +.+..++..+...+...|++++|.+.|+++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 44556777788888899999999998888765 5577788888888889999999999998888764 446778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHH--HHHHcC
Q 006981 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK--ACANAG 248 (623)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~--~~~~~g 248 (623)
.|...|++++|.+.|+++.+.. +.+...+..+... .|+......+.. .+...|
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~ 152 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQA------------------------DVDIDDLNVQSEDFFFAAPN 152 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------------------------------CCTTSHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHH------------------------HHHHHHHHHHHHhHHHHHcc
Confidence 8888899999998888888763 1222222222000 000000111101 133444
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006981 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328 (623)
Q Consensus 249 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 328 (623)
++++|...++++.+.. +.+..++..+...|.+.|++++|.+.++++.+.... +..++..+...+...|++++|...++
T Consensus 153 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 230 (327)
T 3cv0_A 153 EYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYN 230 (327)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555555555544443 334445555555555555555555555555443221 34445555555555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHcCCChhhHHHHH
Q 006981 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-----------TVSTMNALITALCDGDQLPKTMEVL 397 (623)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~ 397 (623)
++.+.. +.+..++..+...|.+.|++++|.+.|++..+..... +...|..+..++.+.|++++|..++
T Consensus 231 ~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 231 RALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 554432 2244555555566666666666666665554432110 2455666666666666666666666
Q ss_pred HH
Q 006981 398 SD 399 (623)
Q Consensus 398 ~~ 399 (623)
++
T Consensus 310 ~~ 311 (327)
T 3cv0_A 310 AQ 311 (327)
T ss_dssp TC
T ss_pred HH
Confidence 54
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.73 E-value=5.6e-17 Score=160.57 Aligned_cols=290 Identities=15% Similarity=0.143 Sum_probs=128.0
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCC
Q 006981 29 LHSYNRLI-RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (623)
Q Consensus 29 ~~~~~~l~-~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 107 (623)
+...+.|+ +.|++++|.+.++++.... +...++..+.+.|++++|++.|.+. +|..+|..++..+...|+
T Consensus 6 ~~a~~~ll~~~~~ld~A~~fae~~~~~~-------vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 6 TSAVQVLIEHIGNLDRAYEFAERCNEPA-------VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHccCHHHHHHHHHhCCChH-------HHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCC
Confidence 34455666 7788999999999984432 3346777788889999999999764 566689999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (623)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (623)
+++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..
T Consensus 77 ~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~ 147 (449)
T 1b89_A 77 WEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 147 (449)
T ss_dssp ----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999977766664 4557788899999999999999888774 36777999999999999999999999997
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 006981 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (623)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 267 (623)
+ ..|..+..++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|...... +..
T Consensus 148 a---------~n~~~LA~~L~~Lg~yq~AVea~~KA--------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~ 205 (449)
T 1b89_A 148 V---------SNFGRLASTLVHLGEYQAAVDGARKA--------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVV 205 (449)
T ss_dssp T---------TCHHHHHHHHHTTTCHHHHHHHHHHH--------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTT
T ss_pred h---------hhHHHHHHHHHHhccHHHHHHHHHHc--------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHh
Confidence 7 36888999999999999999999876 2567899999999999999999655443 233
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CH
Q 006981 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--GKVEAAFEILQEAKNQGISV------GI 339 (623)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~ 339 (623)
.+.-...++..|.+.|++++|..+++...... .-....|+-+.-.|++- +++.+.++.|.. +-+++| +.
T Consensus 206 ~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~ 282 (449)
T 1b89_A 206 HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQA 282 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTT
T ss_pred CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHH
Confidence 44555678899999999999999999887654 33566677666666654 344444444431 123333 45
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH
Q 006981 340 ISYSSLMGACSNAKNWQKALEL 361 (623)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~ 361 (623)
..|..++-.|.+.++++.|...
T Consensus 283 ~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 283 HLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp TCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHH
Confidence 6788888888899999988764
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=2.8e-16 Score=158.17 Aligned_cols=273 Identities=12% Similarity=0.025 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006981 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (623)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (623)
.+..+...+.+.|++++|.+.|+++.+.. +.+..+|..+...|.+.|++++|+..|+++.+.. +.+..++..+...|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34445555555555555555555555432 2344455555555555555555555555554432 223444445555555
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006981 209 QSGAVDRAFDVLAEMNAEVHPVDPDHIT-IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (623)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (623)
..|++++|.+.|+++... .|+... +..+ ......+..+...+.+.|++++
T Consensus 145 ~~g~~~~A~~~~~~al~~----~p~~~~~~~~~-------------------------~~~~~~~~~l~~~~~~~g~~~~ 195 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQ----NPKYKYLVKNK-------------------------KGSPGLTRRMSKSPVDSSVLEG 195 (365)
T ss_dssp HTTCHHHHHHHHHHHHHH----CHHHHCC--------------------------------------------CCHHHHH
T ss_pred ccccHHHHHHHHHHHHHh----CccchHHHhhh-------------------------ccchHHHHHHHHHHhhhhhHHH
Confidence 555555555555544431 111100 0000 0012334445666777777777
Q ss_pred HHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 288 ACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (623)
Q Consensus 288 A~~l~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (623)
|...|+++.+.... ++..++..+...+...|++++|...++++.+.. +.+..++..+..+|.+.|++++|...|++..
T Consensus 196 A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 274 (365)
T 4eqf_A 196 VKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRAL 274 (365)
T ss_dssp HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777665322 146667777777777777777777777776653 3456677777777777788888877777776
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCC---C--------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL---C--------PNTITYSILLVACERKDDVEVGLMLLSQ 434 (623)
Q Consensus 367 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 434 (623)
+.. +.+..+|..+...|.+.|++++|...|+++.+... . .+..+|..+..++...|+.+.+..+.++
T Consensus 275 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 275 EIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred hcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 643 23467777777778888888888888877765210 0 0245677777777788887777766543
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=1.9e-15 Score=146.45 Aligned_cols=256 Identities=12% Similarity=0.147 Sum_probs=185.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc-hHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCh
Q 006981 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMD-KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDS 108 (623)
Q Consensus 30 ~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 108 (623)
...+.....|++..|++.++...... |.+ ......+++.+...|++++|+..++...+|+..++..+...+...++.
T Consensus 4 ~~~~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 4 FDVKNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcH
Confidence 34556677888888888887664433 333 234456677777788888888888776667777888888888888888
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 109 EGAFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (623)
++|++.++.+...+..| +...+..+...+...|++++|++.+++ +.+..++..++..|.+.|++++|.+.|++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888887766434 566666777888888888888888876 45777888888888888888888888888
Q ss_pred HHhCCCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 006981 188 MRSKNVKPDRVVF---NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264 (623)
Q Consensus 188 m~~~g~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 264 (623)
+.+.. |+.... ...+..+...|++++|..+|+++... .+.+...++.+..++.+.|++++|...|+++.+.+
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK---CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 87763 443211 12233344457788888888888764 24566777778888888888888888888877765
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCC
Q 006981 265 IKGTPEVYTIAINCCSQTGDWEF-ACSVYDDMTKKG 299 (623)
Q Consensus 265 ~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~~ 299 (623)
+.++.++..++..+...|+.++ +.++++++.+..
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 5677778888888888887765 567777777653
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=1.4e-15 Score=150.22 Aligned_cols=277 Identities=12% Similarity=0.042 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006981 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (623)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (623)
.+..+...+...|++++|..+|+++.+.. +.+..++..+...+.+.|++++|...|+++.+.. +.+..++..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 44556666777777777777777776653 3356667777777777777777777777776653 335566666677777
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHH-HH-HHHhcCCH
Q 006981 209 QSGAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA-IN-CCSQTGDW 285 (623)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~ 285 (623)
..|++++|.+.+.++.... |+. ..+..+... .++......+ .. .+...|++
T Consensus 101 ~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQ----PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTS----TTTTTC------------------------------------------CCTTSHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC----CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 7777777777777766531 211 111111000 0111111122 22 37788999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (623)
Q Consensus 286 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (623)
++|.+.++++.+.... +...+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|++.
T Consensus 155 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999887543 77889999999999999999999999998875 456888999999999999999999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-----------NTITYSILLVACERKDDVEVGLMLLSQ 434 (623)
Q Consensus 366 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----------~~~t~~~ll~a~~~~g~~~~a~~~~~~ 434 (623)
.+.. +.+..+|..+...|.+.|++++|.+.|+++.+..... +..++..+..++.+.|+.++|..++++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 8754 3468899999999999999999999999988742111 367888999999999999999999876
Q ss_pred HH
Q 006981 435 AK 436 (623)
Q Consensus 435 ~~ 436 (623)
..
T Consensus 312 ~l 313 (327)
T 3cv0_A 312 NV 313 (327)
T ss_dssp CS
T ss_pred HH
Confidence 54
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=2.6e-17 Score=162.96 Aligned_cols=283 Identities=13% Similarity=0.156 Sum_probs=130.7
Q ss_pred hhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 006981 72 KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151 (623)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 151 (623)
...|++++|.++++++.+|+ +|..++.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|++.++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34577999999999997664 899999999999999999999965 3577799999999999999999999887
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 006981 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231 (623)
Q Consensus 152 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 231 (623)
..++. .+++.+.+.|+.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+.
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~------- 149 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------- 149 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHTT-------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh-------
Confidence 77664 4567889999999999999999888874 3677899999999999999999999998762
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006981 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311 (623)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li 311 (623)
.|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. . +......++
T Consensus 150 ----n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~--~ad~l~~lv 214 (449)
T 1b89_A 150 ----NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---V--HADELEELI 214 (449)
T ss_dssp ----CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---T--CHHHHHHHH
T ss_pred ----hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---h--CHhhHHHHH
Confidence 5888999999999999999999988 257899999999999999999966554322 2 334455788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHH
Q 006981 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA--KNWQKALELYEHMKSIKLKP------TVSTMNALITA 383 (623)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~------~~~~~~~li~~ 383 (623)
..|.+.|++++|..+++...... +-....|+-|..+|++- +++.+.++.|..- .+++| +...|..+...
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999887655 55677788777777764 4555666655421 12222 34568888888
Q ss_pred HHcCCChhhHHHH
Q 006981 384 LCDGDQLPKTMEV 396 (623)
Q Consensus 384 ~~~~g~~~~A~~l 396 (623)
|.+.++++.|...
T Consensus 292 y~~~~e~d~A~~t 304 (449)
T 1b89_A 292 YDKYEEYDNAIIT 304 (449)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHhhchHHHHHHH
Confidence 8888888888763
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.68 E-value=2.3e-14 Score=138.74 Aligned_cols=194 Identities=11% Similarity=0.056 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006981 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311 (623)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li 311 (623)
+..++..+...+...++.++|.+.++.+...+. +.+...+..+...+.+.|++++|++.+++ ..+...+..++
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~ 137 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTV 137 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHH
Confidence 333444444444444444444444444443332 22333344444444444444444444443 12334444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 006981 312 DFAGHAGKVEAAFEILQEAKNQGISVGII---SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388 (623)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 388 (623)
..+.+.|++++|.+.++.+.+.. |+.. ....++..+...|++++|..+|+++.+.. +.+...|+.+..++.+.|
T Consensus 138 ~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g 214 (291)
T 3mkr_A 138 QILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQG 214 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcC
Confidence 44444444444444444444432 2211 01112222333455555555555555432 234555555555555555
Q ss_pred ChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 006981 389 QLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEV-GLMLLSQAKE 437 (623)
Q Consensus 389 ~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~-a~~~~~~~~~ 437 (623)
++++|.+.|++..+. .| +..++..++..+...|+.++ +.++++++.+
T Consensus 215 ~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 215 RWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 555555555555543 23 44455555555555555543 3455555554
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=4e-14 Score=147.74 Aligned_cols=213 Identities=10% Similarity=-0.025 Sum_probs=115.9
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHhhhCC------------CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-----C-
Q 006981 61 KVYHARFFNVCKSQKAIKEAFRFFKLVP------------NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-----G- 122 (623)
Q Consensus 61 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----g- 122 (623)
..++..++.++...|+.++|++.|++.. +....+|+.+..+|...|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4445555666666666677666665421 223456667777777777777777766665432 0
Q ss_pred C-CCCHHHHHHHHHHHHHc--CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCCCC
Q 006981 123 L-KADCKLYTTLITTCAKS--GKVDAMFEVFHEMVNAGIEPNVHTYGALIDG---CAKAGQVAKAFGAYGIMRSKNVKPD 196 (623)
Q Consensus 123 ~-~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~ 196 (623)
. .....++..+..++.+. +++++|++.|++..+.. +-+...+..+... +...++.++|++.+++..+.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 0 11234555554444443 34667777777766553 2234444444333 233455666666666665542 234
Q ss_pred HHHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHH
Q 006981 197 RVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (623)
Q Consensus 197 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 272 (623)
..++..+...+.. .|+.++|.+.+++..... +.+..++..+...|.+.|++++|...|++..+.. +.+..++
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA---PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 4444444444333 245566666666655431 3345566666667777777777777777766654 4455555
Q ss_pred HHHHHHH
Q 006981 273 TIAINCC 279 (623)
Q Consensus 273 ~~li~~~ 279 (623)
..+...|
T Consensus 285 ~~lg~~y 291 (472)
T 4g1t_A 285 CQIGCCY 291 (472)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.67 E-value=2.7e-12 Score=141.54 Aligned_cols=375 Identities=14% Similarity=0.177 Sum_probs=272.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCC
Q 006981 29 LHSYNRLIRQGRISECIDLLEDMERKGL-LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (623)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~l~~~m~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 107 (623)
..+...++..|.+.+|++++++....+. ++.+......++....+. +......+..+....+ ..-+...+...|.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lgl 1064 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNEL 1064 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCC
Confidence 3345667799999999999999985432 234555555444433322 2333333333333222 3447788899999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (623)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (623)
+++|..+|++.. -.....+.++. ..+++++|.++.++.. +..+|..+..++.+.|++++|++.|.+
T Consensus 1065 yEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1065 FEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred HHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 999999999862 12222333333 7788999999988652 577899999999999999999999976
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 006981 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (623)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 267 (623)
. -|...|..++.++.+.|++++|.+.+...++. .++....+.++.+|++.+++++..... + .+
T Consensus 1131 A------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~----~~e~~Idt~LafaYAKl~rleele~fI----~---~~ 1193 (1630)
T 1xi4_A 1131 A------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK----ARESYVETELIFALAKTNRLAELEEFI----N---GP 1193 (1630)
T ss_pred c------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----cccccccHHHHHHHHhhcCHHHHHHHH----h---CC
Confidence 4 37788899999999999999999999877653 244334445889999999988644442 1 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006981 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (623)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (623)
+...|..+...|...|++++|...|... ..|..+...+.+.|++++|.+.+++. .+..+|..+-.
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~ 1258 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 1258 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHH
Confidence 5567778999999999999999999985 37999999999999999999999876 35789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHH--hcCC
Q 006981 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACE--RKDD 424 (623)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~--~~g~ 424 (623)
+|...|++..|......+. .+...+..++.-|.+.|.+++|+.+++..+. +.|. ...|+-+...++ +.++
T Consensus 1259 acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~pek 1331 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQK 1331 (1630)
T ss_pred HHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCHHH
Confidence 9999999999998877643 4667788999999999999999999988774 3343 334544444444 4556
Q ss_pred HHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHh--cHHHHH
Q 006981 425 VEVGLMLLSQAKEDGVIP------NLVMFKCIIGMCSR--RYEKAR 462 (623)
Q Consensus 425 ~~~a~~~~~~~~~~g~~p------~~~~~~~li~~~~~--~~~~a~ 462 (623)
..++.++|..-. ++.| +...|.-++-.|.+ .+++|.
T Consensus 1332 lmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1332 MREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 666666665322 2333 34567777777654 455554
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=5.9e-14 Score=146.49 Aligned_cols=375 Identities=10% Similarity=-0.070 Sum_probs=209.0
Q ss_pred HHHHHHHH----hcCCHHHHHHHHHHHHHc-------CCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---------
Q 006981 29 LHSYNRLI----RQGRISECIDLLEDMERK-------GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--------- 88 (623)
Q Consensus 29 ~~~~~~l~----~~g~~~~A~~l~~~m~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------- 88 (623)
...||.|. ..|++++|++.|++..+. ...+........++.++...|++++|...|++..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 34555544 789999999999887642 1123445566778888888899999998887542
Q ss_pred --CCCHHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHHcCChhHHHHHHHHHHHCCCCCC
Q 006981 89 --NPTLSTFNMLMSVCAS--SKDSEGAFQVLRLVQEAGLKADCKLYTTLITT---CAKSGKVDAMFEVFHEMVNAGIEPN 161 (623)
Q Consensus 89 --~~~~~~~~~li~~~~~--~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~~~ 161 (623)
.....+++.+..++.. .+++++|+..|++..+.. |-++..+..+..+ +...++.++|++.+++..+.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 1234566666555544 457999999999999875 4456666655555 345678889999999888764 445
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHH
Q 006981 162 VHTYGALIDGCAK----AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (623)
Q Consensus 162 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 237 (623)
..++..+...+.. .++.++|.+.+++..... +.+..++..+...|...|++++|...+.+..+.. +.+..++
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~ 284 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI---PNNAYLH 284 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC---CChHHHH
Confidence 6667666655554 467889999999988764 4567888999999999999999999999988642 3345566
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006981 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (623)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 317 (623)
..+...|...+....+.. ...........+.+++|...|++....... +..++..+...+...
T Consensus 285 ~~lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHh
Confidence 666655543211100000 000000011112234555555555443221 223344455555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHH
Q 006981 318 GKVEAAFEILQEAKNQGISVGII--SYSSLMG-ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (623)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 394 (623)
|++++|...|++..+....+... .+..+.. .+.+.|+.++|...|++..+. .|+...+... ...+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---------~~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---------KDKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH---------HHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---------HHHHH
Confidence 66666666665555543222111 1111111 123455666666666655543 2332222111 12233
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (623)
Q Consensus 395 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (623)
++++...+.. +.+..+|..+..++...|++++|.+.|++.++.
T Consensus 417 ~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 417 KIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444443321 234555666666666666666666666666553
No 36
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.63 E-value=7.7e-12 Score=138.03 Aligned_cols=313 Identities=12% Similarity=0.130 Sum_probs=231.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHH
Q 006981 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGA 111 (623)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 111 (623)
...++..|.+++|..+|++... ... . +..+....+++++|.++.++... ..+|..+..++.+.|++++|
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-----~~~-A---~~VLie~i~nldrAiE~Aervn~--p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-----NTS-A---VQVLIEHIGNLDRAYEFAERCNE--PAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-----HHH-H---HHHHHHHHhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCHHHH
Confidence 4556688999999999988631 111 1 11112356778999999887744 56688999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 112 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (623)
+..|.+. .|...|..++.++.+.|++++|.+.+....+.. ++....+.++.+|++.+++++.... .+
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh-
Confidence 9998653 467788889999999999999999998877653 4444444588889999888853333 22
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHH
Q 006981 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271 (623)
Q Consensus 192 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 271 (623)
.++...|..+...|...|++++|..+|... ..|..+...|.+.|+++.|.+.+++. .+..+
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~a 1252 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRT 1252 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHH
Confidence 346667777888889999999999999874 26888999999999999999999876 23478
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006981 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (623)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (623)
|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...... +-....|+-|...|++
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 888888898889988888766542 2255667788889999999999999998776554 3445566666666665
Q ss_pred --cCCHHHHHHHHHHHHhCCCC------CCHHHHHHHHHHHHcCCChhhHHH
Q 006981 352 --AKNWQKALELYEHMKSIKLK------PTVSTMNALITALCDGDQLPKTME 395 (623)
Q Consensus 352 --~g~~~~A~~~~~~m~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~ 395 (623)
-+++.++.+.|..-.. ++ -+...|..++..|.+.|+++.|..
T Consensus 1327 y~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1327 FKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred CCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4556666666664332 12 245678899999999999998883
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.60 E-value=2.1e-13 Score=140.87 Aligned_cols=349 Identities=11% Similarity=0.028 Sum_probs=208.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHH---HHHHHHhhhCCCCCHHHHHHHHHHHHc
Q 006981 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI---KEAFRFFKLVPNPTLSTFNMLMSVCAS 104 (623)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~li~~~~~ 104 (623)
+......+.+.|++++|.++|++..+.|.. ... ..++..+...|+. ++|+..|++....++..+..+...+..
T Consensus 6 ~~~la~~~~~~g~~~~A~~~~~~aa~~g~~--~A~--~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 6 DQRLANEALKRGDTVTAQQNYQQLAELGYS--EAQ--VGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAA 81 (452)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--TGG--GTCC----------------------------CHHHHHHHHHT
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHCCCH--HHH--HHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 455667778999999999999999887732 221 1233333445666 899999988776677777777775665
Q ss_pred CC-----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006981 105 SK-----DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---MFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (623)
Q Consensus 105 ~~-----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (623)
.+ ++++|+..|++..+.|. ++ .+..|...|...+..+. +.+.+......| +...+..|...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 55 77889999999888763 33 66667777776655433 455555555443 3456667777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc----CC
Q 006981 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG---AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA----GQ 249 (623)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~----g~ 249 (623)
.++++......+.+.-...+...+..|...|.+.| +.++|.+.|.+....+ .++...+..|...|... ++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g---~~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG---TVTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---CSCHHHHHHHHHHHTCGGGSSCC
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCCCCC
Confidence 55444443222222111223347777777888888 7888888888877643 44555445666666544 67
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHH
Q 006981 250 VDRAREVYKMIHKYNIKGTPEVYTIAINC-C--SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG-----KVE 321 (623)
Q Consensus 250 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~~ 321 (623)
+++|...|++.. .+ ++..+..+... | ...+++++|.+.|++..+.| +...+..+...|. .| +++
T Consensus 233 ~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 233 EKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 888888888877 33 34666666666 3 45778888888888887776 4556666666665 44 788
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhhH
Q 006981 322 AAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKT 393 (623)
Q Consensus 322 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A 393 (623)
+|...|++.. .| +...+..|...|.. ..++++|...|++..+.|. ......|...|.. ..+.++|
T Consensus 305 ~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 305 AAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHH
Confidence 8888887766 33 55666666666665 3377778887777776542 2334444445543 3456677
Q ss_pred HHHHHHHHHCC
Q 006981 394 MEVLSDMKSLG 404 (623)
Q Consensus 394 ~~l~~~m~~~g 404 (623)
...|+...+.|
T Consensus 378 ~~~~~~A~~~g 388 (452)
T 3e4b_A 378 YVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHCC
Confidence 77776666655
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=5.8e-13 Score=126.30 Aligned_cols=90 Identities=12% Similarity=-0.007 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 006981 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388 (623)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 388 (623)
.+...+...|++++|...++.+.+.. +.+..++..+...|.+.|++++|...|++..+.. +.+...|..+...|.+.|
T Consensus 144 ~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g 221 (258)
T 3uq3_A 144 LEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVK 221 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHh
Confidence 33333333444444444444333322 1223333344444444444444444444433322 122333444444444444
Q ss_pred ChhhHHHHHHHH
Q 006981 389 QLPKTMEVLSDM 400 (623)
Q Consensus 389 ~~~~A~~l~~~m 400 (623)
++++|.+.|++.
T Consensus 222 ~~~~A~~~~~~a 233 (258)
T 3uq3_A 222 EYASALETLDAA 233 (258)
T ss_dssp CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 444444444443
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=7.7e-13 Score=125.44 Aligned_cols=223 Identities=9% Similarity=0.023 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCC----HHHHH
Q 006981 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPN----VHTYG 166 (623)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~----~~~~~ 166 (623)
..|..+...+...|++++|+..|+.+.+.. .+..++..+...+...|++++|.+.+++..+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456666666777777777777777776665 5566677777777777777777777776655320 011 45666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH
Q 006981 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246 (623)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~ 246 (623)
.+...|.+.|++++|...|++.... .|+. ..+.+.|++++|.+.++.+.... +.+...+..+...+..
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN---PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC---cchHHHHHHHHHHHHH
Confidence 6666666667777777766666654 2332 23444455666666666655421 1223445555555556
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006981 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (623)
Q Consensus 247 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 326 (623)
.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|...|++..+.... +...+..+...+.+.|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 666666666666555543 334555555555555555555555555555543221 344444455555555555555555
Q ss_pred HHHHH
Q 006981 327 LQEAK 331 (623)
Q Consensus 327 ~~~~~ 331 (623)
++...
T Consensus 230 ~~~a~ 234 (258)
T 3uq3_A 230 LDAAR 234 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.56 E-value=6.2e-13 Score=122.76 Aligned_cols=81 Identities=16% Similarity=-0.004 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 006981 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277 (623)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 277 (623)
..+..+...+.+.|++++|...|++..... +.+...+..+...+.+.|++++|...|++..+.+ +.+...+..+..
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN---PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 333334444444444444444444433321 1223333334444444444444444444444333 233334444444
Q ss_pred HHHhc
Q 006981 278 CCSQT 282 (623)
Q Consensus 278 ~~~~~ 282 (623)
.+.+.
T Consensus 82 ~~~~~ 86 (217)
T 2pl2_A 82 AYVAL 86 (217)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 44333
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.55 E-value=5.5e-13 Score=123.10 Aligned_cols=197 Identities=15% Similarity=0.015 Sum_probs=98.2
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (623)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (623)
++...+..+...+.+.|++++|+..|+...+.. +.+...+..+...+.+.|++++|...|++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 344555566666666666666666666666543 4455566666666666666666666666666543 33455566666
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHH
Q 006981 170 DGCAKA-----------GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (623)
Q Consensus 170 ~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 238 (623)
..+.+. |++++|+..|++..+.. +-+...+..+...+...|++++|...|++..+. . .+...+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~--~~~~~~~ 155 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALAL--E--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C--CCHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--c--cchHHHH
Confidence 666655 55555555555554432 223444444445555555555555555554442 1 3344444
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (623)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 294 (623)
.+..+|...|++++|...|++..+.+ +.+..++..+...+.+.|++++|...|++
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 45555555555555555555554443 33444445555555555555555544443
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.53 E-value=5.8e-12 Score=119.09 Aligned_cols=201 Identities=11% Similarity=0.011 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (623)
...|..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4567777777777888888888887777664 4466777777777777788888887777777653 3356677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCh
Q 006981 172 CAKAGQVAKAFGAYGIMRSKNVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (623)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~ 250 (623)
|...|++++|.+.|+++...+..| +...+..+...+...|++++|.+.+.+..... +.+...+..+...+...|++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN---RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHcCCH
Confidence 777777777777777776632233 34556666667777777777777777766531 23455666666677777777
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
++|...++.+.+.. +.+...+..+...+.+.|++++|.+.++++.+.
T Consensus 192 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 192 VPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77777777766554 445566666666666777777777777666654
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.52 E-value=1e-11 Score=114.91 Aligned_cols=201 Identities=10% Similarity=-0.020 Sum_probs=116.5
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (623)
+...|..+...+...|++++|.+.++.+.+.. +.+..++..+...+...|++++|.+.|++..+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34556666666666666666666666666553 3445566666666666666666666666666543 334556666666
Q ss_pred HHHhc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcC
Q 006981 171 GCAKA-GQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (623)
Q Consensus 171 ~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g 248 (623)
.+... |++++|...|+++.+.+..|+ ...+..+...+...|++++|...+.++.... +.+...+..+...+.+.|
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ---PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHT
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCchHHHHHHHHHHHcC
Confidence 66666 666666666666655222222 3455555566666666666666666655421 223445555555666666
Q ss_pred ChHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 249 QVDRAREVYKMIHKYNIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (623)
Q Consensus 249 ~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (623)
++++|...++.+.+.. + .+...+..+...+...|+.++|..+++.+.+
T Consensus 162 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp CHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666666555543 2 4455555555555556666666665555544
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.51 E-value=1.2e-11 Score=114.34 Aligned_cols=202 Identities=12% Similarity=0.006 Sum_probs=125.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006981 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (623)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 205 (623)
+..++..+...+...|++++|.+.|+++.+.. +.+..++..+...|...|++++|...|+++.... +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 35566667777777777777777777776653 3356667777777777777777777777776543 335566666667
Q ss_pred HHHcc-CCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 006981 206 ACGQS-GAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (623)
Q Consensus 206 ~~~~~-g~~~~A~~~~~~m~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 283 (623)
.+... |++++|...++++... +..| +...+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALAD--PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTS--TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHhcCcHHHHHHHHHHHHcC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC
Confidence 77777 7777777777776651 1122 24455666666666667777766666666554 344556666666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (623)
Q Consensus 284 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (623)
++++|...+++..+.....+...+..+...+...|+.+.+..+++.+.+
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666666665543212444455555555556666666666555544
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.51 E-value=1.6e-11 Score=115.95 Aligned_cols=201 Identities=14% Similarity=0.071 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006981 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206 (623)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 206 (623)
...+..+...+...|++++|.+.|+++.+.. +.+..++..+...|.+.|++++|.+.|+++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4566777777888888888888888877653 3466777778888888888888888888777653 3356677777777
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 006981 207 CGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285 (623)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 285 (623)
+...|++++|.+.++++.. .+..| +...+..+...+.+.|++++|...|+++.+.. +.+..++..+...|...|++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ--DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhHHHHHHHHHHHHHh--CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCH
Confidence 7788888888888877765 11233 34566666777777777777777777776654 44566677777777777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (623)
Q Consensus 286 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (623)
++|...++++.+... .+...+..+...+...|+.++|.+.++.+.+.
T Consensus 192 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 192 VPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 777777777666433 24555666666666677777777777666654
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.51 E-value=8.8e-11 Score=112.53 Aligned_cols=221 Identities=12% Similarity=0.002 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCCHHHHH
Q 006981 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (623)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 238 (623)
.++..+...|...|++++|+..|++..+.+ +...+..+...|.. .+++++|.+.|.+..+. .+...+.
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-----~~~~a~~ 78 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-----NYSNGCH 78 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-----CCHHHHH
Confidence 344444444444444444444444444421 23344444444444 44445555444444432 1333444
Q ss_pred HHHHHHHH----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006981 239 ALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSAL 310 (623)
Q Consensus 239 ~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 310 (623)
.+...|.. .+++++|...|++..+.+ +..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 44444444 455555555555544433 33444445555554 555555555555554443 23334444
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006981 311 IDFAGH----AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALIT 382 (623)
Q Consensus 311 i~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 382 (623)
...|.. .+++++|...++...+.+ +...+..+...|.+ .+++++|...|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 444444 455555555555554443 23444455555555 555555555555555432 2444445555
Q ss_pred HHHc----CCChhhHHHHHHHHHHC
Q 006981 383 ALCD----GDQLPKTMEVLSDMKSL 403 (623)
Q Consensus 383 ~~~~----~g~~~~A~~l~~~m~~~ 403 (623)
.|.+ .+++++|++.|++..+.
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHc
Confidence 5555 55555555555555543
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.50 E-value=6e-13 Score=127.69 Aligned_cols=241 Identities=10% Similarity=-0.048 Sum_probs=137.2
Q ss_pred HHHHHHHHHhhhCCC-------CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 006981 75 KAIKEAFRFFKLVPN-------PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147 (623)
Q Consensus 75 ~~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 147 (623)
|++++|+..|+++.. .+..+|..+...+...|++++|+..|+.+.+.. +.+..++..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 445555555544321 134556666777777777777777777777654 445667777777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 006981 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (623)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 227 (623)
+.|++..+.. +.+..++..+...|.+.|++++|...|+++.+. .|+.......+..+...|++++|...+.+.....
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 7777777653 335666777777777777777777777777654 3333333334444455567777777776555431
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 006981 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK---GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304 (623)
Q Consensus 228 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 304 (623)
+++...+ .++..+...++.++|...++...+.... .+..++..+...|.+.|++++|...|++..... |+.
T Consensus 175 ---~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~ 248 (275)
T 1xnf_A 175 ---DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN 248 (275)
T ss_dssp ---CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT
T ss_pred ---CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh
Confidence 2222222 2455555666666666666665443211 013455666666666666666666666666543 211
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 006981 305 VFLSALIDFAGHAGKVEAAFEIL 327 (623)
Q Consensus 305 ~~~~~li~~~~~~g~~~~a~~~~ 327 (623)
+.....++...|++++|++-+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 111233344455555554443
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.50 E-value=7.2e-12 Score=125.42 Aligned_cols=247 Identities=10% Similarity=0.060 Sum_probs=179.3
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAMFEVFHEMVNAGIEPNVHTYGALI 169 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (623)
+...|+.+...+.+.|++++|+..++.+.+.. +-+..+|+.+..++...|+ +++|+..|++.++.. +.+...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 34567788888888888999999998888775 5567788888888888886 889998888888764 44677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH-cC
Q 006981 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN-AG 248 (623)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~-~g 248 (623)
.++.+.|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..|+++.... +.+...|+.+..++.+ .|
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcC
Confidence 88888888888888888888764 4467788888888888888888888888887642 3456777888888887 55
Q ss_pred ChHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---
Q 006981 249 QVDRA-----REVYKMIHKYNIKGTPEVYTIAINCCSQTG--DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG--- 318 (623)
Q Consensus 249 ~~~~A-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g--- 318 (623)
..++| +..|++....+ +.+...|+.+...+.+.| ++++|++.+.++ +.. ..+...+..+...|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccc
Confidence 54666 47777777765 556777887777777777 577777777776 332 235566677777776653
Q ss_pred ------CHHHHHHHHHHH-HHCCCCCCHHHHHHHHH
Q 006981 319 ------KVEAAFEILQEA-KNQGISVGIISYSSLMG 347 (623)
Q Consensus 319 ------~~~~a~~~~~~~-~~~~~~~~~~~~~~li~ 347 (623)
..++|.++++.+ .+.. +.....|..+..
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~ 361 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGR 361 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 246677777776 4432 223344444433
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.50 E-value=1.7e-12 Score=121.89 Aligned_cols=203 Identities=13% Similarity=0.058 Sum_probs=131.8
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (623)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (623)
.....|..+...+...|++++|...|+.+.+.. +.+..++..+...+...|++++|.+.|++..+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 345566777777777888888888888877654 4567777777888888888888888888877653 34667777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCC
Q 006981 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249 (623)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~ 249 (623)
..|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.... +.+...+..+...+.+.|+
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN---ENDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHcCC
Confidence 78888888888888888777653 3456677777777777788888888877776531 3345667777777777777
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006981 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (623)
Q Consensus 250 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 299 (623)
+++|...|+.+.+.. +.+..++..+...|.+.|++++|.+.++++.+..
T Consensus 175 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 175 LDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 777777777776664 4556677777777777777777777777776653
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.49 E-value=8.3e-11 Score=112.70 Aligned_cols=224 Identities=12% Similarity=-0.010 Sum_probs=196.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCCHHH
Q 006981 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEV 271 (623)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 271 (623)
+..++..+...+...|++++|.+.|.+..+ ..+..++..+...|.. .+++++|...|++..+.+ +..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD-----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 567788888899999999999999999886 2345678888899999 999999999999998876 6789
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006981 272 YTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AGKVEAAFEILQEAKNQGISVGIISYS 343 (623)
Q Consensus 272 ~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 343 (623)
+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 9999999999 999999999999999875 67888888899999 999999999999999876 567888
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhhHHHHHHHHHHCCCCCCHHHHHHH
Q 006981 344 SLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (623)
Q Consensus 344 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 415 (623)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 88888988 999999999999998753 57788888999999 999999999999998864 36677778
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCC
Q 006981 416 LVACER----KDDVEVGLMLLSQAKEDG 439 (623)
Q Consensus 416 l~a~~~----~g~~~~a~~~~~~~~~~g 439 (623)
...+.+ .+++++|.+.+++..+.|
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 888888 999999999999998865
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.49 E-value=1.1e-12 Score=125.86 Aligned_cols=222 Identities=11% Similarity=-0.011 Sum_probs=140.7
Q ss_pred cCCChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006981 104 SSKDSEGAFQVLRLVQEAGL---KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180 (623)
Q Consensus 104 ~~~~~~~A~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 180 (623)
..|++++|+..++.+.+... +.+..++..+...+...|++++|.+.|++..+.. +.+..+|..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34677888888888876532 1235577777888888888888888888877764 3457778888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 006981 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (623)
Q Consensus 181 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 260 (623)
|...|++..+.. +.+..++..+...+.+.|++++|.+.|+++... .|+.......+..+...|++++|...++..
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD----DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 888888877653 335667777777777888888888888777653 344334444444555667777777777666
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (623)
Q Consensus 261 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (623)
.... +++...+. ++..+...++.++|...+.+........ +...+..+...+.+.|++++|...+++..+.
T Consensus 171 ~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 171 FEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 5543 33333333 5555666666666666666654432110 1234444444555555555555555555443
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.49 E-value=6.2e-12 Score=120.39 Aligned_cols=59 Identities=14% Similarity=0.122 Sum_probs=24.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (623)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (623)
+..+...+...|++++|...|++..+.. +.+..+|..+...|...|++++|...|++..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 135 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI 135 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 3334444444444444444444443332 2223344444444444444444444444433
No 53
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.49 E-value=7.9e-12 Score=119.64 Aligned_cols=230 Identities=10% Similarity=-0.066 Sum_probs=110.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHc
Q 006981 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD--RVVFNALITACGQ 209 (623)
Q Consensus 132 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~ 209 (623)
.....+...|++++|+..|++..+.. +.+..++..+...|...|++++|+..|++..+.+..|+ ..+|..+...+..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 34444455555555555555555442 12233455555555555555555555555554221111 1224455555555
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006981 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (623)
Q Consensus 210 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 289 (623)
.|++++|.+.|++..... +.+..++..+...|...|++++|...|++..+.. +.+..+|..+...+...+++++|.
T Consensus 87 ~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD---TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS---TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555554421 2233455555555555666666666655555542 334455555552222233666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHHHH
Q 006981 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGK---VEAAFEILQEAKNQG-ISVG------IISYSSLMGACSNAKNWQKAL 359 (623)
Q Consensus 290 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~g~~~~A~ 359 (623)
+.|++..+.... +...+..+...+...|+ .++|...+++..+.. ..|+ ..++..+...|.+.|++++|.
T Consensus 163 ~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 666665554321 34444444455555554 444555555444321 0111 134444555555555555555
Q ss_pred HHHHHHHh
Q 006981 360 ELYEHMKS 367 (623)
Q Consensus 360 ~~~~~m~~ 367 (623)
+.|++..+
T Consensus 242 ~~~~~al~ 249 (272)
T 3u4t_A 242 AAWKNILA 249 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555544
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.48 E-value=1.1e-11 Score=124.03 Aligned_cols=248 Identities=11% Similarity=0.031 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006981 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (623)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~ 205 (623)
...|..+...+.+.|++++|++.|++.++.. +-+..+|+.+...+.+.|+ +++|+..|++..... +-+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4567777888888899999999999888764 4467788888888888886 999999998888764 346778888888
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCC
Q 006981 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ-TGD 284 (623)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~ 284 (623)
++...|++++|+..|+++.... +.+...|..+..++.+.|++++|+..|+++.+.+ +.+...|+.+...+.+ .|.
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld---P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD---AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Confidence 8888888888888888887642 3456778888888888888888888888888876 5677888888888888 555
Q ss_pred HHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----
Q 006981 285 WEFA-----CSVYDDMTKKGVIPDEVFLSALIDFAGHAG--KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK---- 353 (623)
Q Consensus 285 ~~~A-----~~l~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---- 353 (623)
.++| +..|++.+..... +...|..+...+...| ++++|.+.+..+ +. .+.+...+..+..+|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 4666 4667776665433 5566666666666666 467777777666 22 2345566667777776653
Q ss_pred -----CHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHH
Q 006981 354 -----NWQKALELYEHM-KSIKLKPTVSTMNALITAL 384 (623)
Q Consensus 354 -----~~~~A~~~~~~m-~~~~~~~~~~~~~~li~~~ 384 (623)
..++|.++++++ .+.. +.....|..+...+
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 246777777776 4432 12234555444443
No 55
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.47 E-value=5.8e-12 Score=130.06 Aligned_cols=342 Identities=11% Similarity=-0.014 Sum_probs=233.8
Q ss_pred HHHHHhhhHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHcCCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-
Q 006981 67 FFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKDS---EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG- 141 (623)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~---~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g- 141 (623)
+.....+.|++++|.++|++.. ..+...+..+...+...|+. ++|+..|++..+. ++..+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 3455667899999999998764 23455566677777778888 8999999988854 5566677777555555
Q ss_pred ----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC--
Q 006981 142 ----KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV---AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA-- 212 (623)
Q Consensus 142 ----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-- 212 (623)
++++|.+.|++..+.|. ++ .+..|...|...+.. .++.+.+......| +...+..|...|...+.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 77899999999998763 23 677777778776553 34555555555555 35566677777777774
Q ss_pred --HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----C
Q 006981 213 --VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG---QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT----G 283 (623)
Q Consensus 213 --~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g 283 (623)
.+.+..++...... .|+ .+..|...|.+.| +.++|.+.|++..+.+ +++...+..+...|... +
T Consensus 159 ~~~~~a~~~~~~a~~~----~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 159 QHLDDVERICKAALNT----TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGHHHHHHHHHHHTTT----CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSC
T ss_pred cCHHHHHHHHHHHHcC----CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCC
Confidence 55555566555432 344 7788888999999 9999999999999988 66666667788888665 7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CH
Q 006981 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDF-A--GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-----NW 355 (623)
Q Consensus 284 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~ 355 (623)
++++|.+.|++.. .| +...+..+... + ...++.++|...|++..+.| +...+..|...|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 9999999999987 43 44555556555 3 46899999999999999887 6778888888887 55 99
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHH
Q 006981 356 QKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER----KDDVEV 427 (623)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~ 427 (623)
++|...|++.. ..+...+..|...|.. ..+.++|...|++..+.|. |+ ....|...|.. ..+.++
T Consensus 304 ~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 304 KAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-NS--ADFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-TT--HHHHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-HH--HHHHHHHHHHhCCCCCCCHHH
Confidence 99999999887 3467778788777776 4489999999999998763 33 33344444443 468999
Q ss_pred HHHHHHHHHHCCC
Q 006981 428 GLMLLSQAKEDGV 440 (623)
Q Consensus 428 a~~~~~~~~~~g~ 440 (623)
|...|+...+.|.
T Consensus 377 A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 377 AYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCC
Confidence 9999999988774
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.47 E-value=4.1e-12 Score=119.26 Aligned_cols=199 Identities=12% Similarity=0.028 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006981 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206 (623)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 206 (623)
..+|..+...+...|++++|...|+++.+.. +.+..++..+...+.+.|++++|+..|++..+.. +.+..++..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3455555666666666666666666666543 3345566666666666666666666666665542 2344555555556
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 006981 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (623)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (623)
+...|++++|.+.++++.... +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+.+.|+++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG---MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT---CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 666666666666666555421 2234455555555555555555555555555443 334455555555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (623)
Q Consensus 287 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (623)
+|...|++..+.... +..++..+...+...|++++|...++++.+
T Consensus 177 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 177 EALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 555555555443221 344444444455555555555555554444
No 57
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.44 E-value=2.2e-09 Score=114.76 Aligned_cols=404 Identities=8% Similarity=0.004 Sum_probs=268.6
Q ss_pred hHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHH---HHHHHHHhhhCC-----CCCHHHH
Q 006981 28 QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA---IKEAFRFFKLVP-----NPTLSTF 95 (623)
Q Consensus 28 ~~~~~~~l~----~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~-----~~~~~~~ 95 (623)
+..+|..|+ +.+.++.|+.+|+++...- |....+....+..-.+.+. ++.+..+|++.. +|++..|
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 455666666 6789999999999999876 5555555555555666778 999999998754 2888899
Q ss_pred HHHHHHHHcCCCh--------HHHHHHHHHHHH-cCC-CC-CHHHHHHHHHHHH---------HcCChhHHHHHHHHHHH
Q 006981 96 NMLMSVCASSKDS--------EGAFQVLRLVQE-AGL-KA-DCKLYTTLITTCA---------KSGKVDAMFEVFHEMVN 155 (623)
Q Consensus 96 ~~li~~~~~~~~~--------~~A~~~~~~m~~-~g~-~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~ 155 (623)
...+....+.++. +...++|+.... .|. .+ +...|...+.... ..++++.+.++|+..+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 9888776665543 334477777654 455 44 4567877776644 23457788999999885
Q ss_pred CCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHh--CCC----C-----------C--C------H
Q 006981 156 AGIEPNVHTYGALIDGCAK-------------AGQVAKAFGAYGIMRS--KNV----K-----------P--D------R 197 (623)
Q Consensus 156 ~g~~~~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~--~g~----~-----------p--~------~ 197 (623)
.....-..+|......-.. ..+++.|...+.++.. .++ + | + .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 4222223344322221111 1223445555554321 111 1 1 0 1
Q ss_pred HHHHHHHHHHHccC-------CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHhcCCCCCH
Q 006981 198 VVFNALITACGQSG-------AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR-EVYKMIHKYNIKGTP 269 (623)
Q Consensus 198 ~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~-~~~~~~~~~~~~~~~ 269 (623)
..|...+.---..+ ..+.+..+|++.... ++-+...|...+..+.+.|+.++|. .+|++.... ++.+.
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~---~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~ 378 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH---VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSA 378 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCH
Confidence 23444444322222 123456678887763 3445667877888888889998996 999998875 36677
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 006981 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKG---------VIPD------------EVFLSALIDFAGHAGKVEAAFEILQ 328 (623)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~---------~~p~------------~~~~~~li~~~~~~g~~~~a~~~~~ 328 (623)
..|-..+...-+.|+++.|.++|+.+.... -.|+ ...|...+....+.|..+.|..+|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 788888898999999999999999887631 0132 2357777777778899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCC
Q 006981 329 EAKNQGISVGIISYSSLMGACSNAK-NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (623)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 407 (623)
...+.........|...+..-.+.+ +.+.|.++|+...+. .+.+...|...+......|+.+.|..+|++.......+
T Consensus 459 ~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~ 537 (679)
T 4e6h_A 459 KCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS 537 (679)
T ss_dssp HHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence 9987611223344444433344444 589999999988765 34466777888888888899999999999988753222
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 408 --NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (623)
Q Consensus 408 --~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (623)
....|...+.--.+.|+.+.+..+.+++.+.
T Consensus 538 ~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 538 HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456888888888899999999999999874
No 58
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.40 E-value=4.9e-10 Score=109.43 Aligned_cols=217 Identities=9% Similarity=0.098 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCCh-------hHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 006981 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAK-------SGKV-------DAMFEVFHEMVN-AGIEPNVHTYGALIDGCA 173 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~-~g~~~~~~~~~~li~~~~ 173 (623)
++|..+|+++.+.. +.++..|..++..+.. .|++ ++|..+|++..+ .. +.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 56777777777653 5566777777766653 4665 777777777776 32 335567777777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH-HcCCh
Q 006981 174 KAGQVAKAFGAYGIMRSKNVKPD-RV-VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA-NAGQV 250 (623)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~-~~g~~ 250 (623)
+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+.. +++...|........ ..|++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST---TCCTHHHHHHHHHHHHTSCCH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCH
Confidence 777777777777777764 343 22 67777777777777777777777776531 222333333322221 25677
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG-VIP--DEVFLSALIDFAGHAGKVEAAFEIL 327 (623)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~a~~~~ 327 (623)
+.|..+|+...+.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|..++....+.|+.+.|..++
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777666553 4456666666666666777777777777666642 233 3445566666666666666666666
Q ss_pred HHHHHC
Q 006981 328 QEAKNQ 333 (623)
Q Consensus 328 ~~~~~~ 333 (623)
+++.+.
T Consensus 265 ~~a~~~ 270 (308)
T 2ond_A 265 KRRFTA 270 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.39 E-value=8.1e-12 Score=127.12 Aligned_cols=303 Identities=14% Similarity=0.035 Sum_probs=153.1
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-C
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEP-N 161 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~ 161 (623)
....+......+...|++++|...|+.+.+.+ +.+ ..++..+...+...|++++|...+++.... +-.| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 44455666667777788888888887777764 223 246667777777788888888777765432 1111 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCC--------------------HHHH
Q 006981 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD----RVVFNALITACGQSGA--------------------VDRA 216 (623)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~A 216 (623)
..++..+...|...|++++|...+++...... .++ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 44566677777777777777777776654210 001 2355555566666666 5555
Q ss_pred HHHHHHHhhCCCCC--CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhcCCHHHH
Q 006981 217 FDVLAEMNAEVHPV--DP-DHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGT----PEVYTIAINCCSQTGDWEFA 288 (623)
Q Consensus 217 ~~~~~~m~~~~~~~--~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A 288 (623)
.+.+.+........ .+ ...++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 55555443210000 00 122344444555555555555555554433210 000 12344444444444444444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV-GIISYSSLMGACSNAKNWQKALELYEHMKS 367 (623)
Q Consensus 289 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (623)
...+++...... ..+..+ ...++..+...|.+.|++++|...+++..+
T Consensus 247 ~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 247 SEYYKKTLLLAR-------------------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHHHHH-------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------------------------------hCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 444444332100 001000 033445555555555565555555555432
Q ss_pred CCC-CCC----HHHHHHHHHHHHcCCChhhHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCH
Q 006981 368 IKL-KPT----VSTMNALITALCDGDQLPKTMEVLSDMKS----LGLCP-NTITYSILLVACERKDDV 425 (623)
Q Consensus 368 ~~~-~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p-~~~t~~~ll~a~~~~g~~ 425 (623)
... .++ ..++..+...|...|++++|.+.+++..+ .+-.+ ...++..+...+...|+.
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 100 011 33455566666666666666666665432 11111 233455555555555554
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.37 E-value=1.7e-11 Score=124.71 Aligned_cols=282 Identities=15% Similarity=0.026 Sum_probs=172.3
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC
Q 006981 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN----VHTYGALIDGCAKAGQVAKAFGAYGIMRSK----NVKP 195 (623)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p 195 (623)
......+......+...|++++|...|++..+.+ +.+ ..++..+...|...|++++|...|++.... +-.|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3445566667777778888888888888877753 223 346777777777888888888877765432 1111
Q ss_pred -CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC----HHHHHHHHHHHHHcCC--------------------h
Q 006981 196 -DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQ--------------------V 250 (623)
Q Consensus 196 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~~ll~~~~~~g~--------------------~ 250 (623)
...++..+...+...|++++|...+.+....... .++ ..++..+...|...|+ +
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE-LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-cccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 1335555666666677777777666665431000 011 2244444455555555 4
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP-DEVFLSALIDFAGHAGKVEAAFEILQE 329 (623)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~ 329 (623)
++|...+++..+. + ...+..| ...++..+...+...|++++|...+.+
T Consensus 164 ~~A~~~~~~al~~----------------------------~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (406)
T 3sf4_A 164 QAAVDFYEENLSL----------------------------V---TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 212 (406)
T ss_dssp HHHHHHHHHHHHH----------------------------H---HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----------------------------H---HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4444444333221 0 0011101 123455555566666666666666665
Q ss_pred HHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHcCCChhhHHHHHHH
Q 006981 330 AKNQ----GIS-VGIISYSSLMGACSNAKNWQKALELYEHMKSIKL-KPT----VSTMNALITALCDGDQLPKTMEVLSD 399 (623)
Q Consensus 330 ~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~l~~~ 399 (623)
..+. +.. ....++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|.+.+++
T Consensus 213 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 5432 100 1123677777888888888888888887653210 011 55788899999999999999999999
Q ss_pred HHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 400 MKSL----GLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (623)
Q Consensus 400 m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (623)
..+. +-.+ ...++..+...+...|++++|...+++..+.
T Consensus 293 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8652 1111 1557788889999999999999999988653
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.36 E-value=1.6e-10 Score=103.38 Aligned_cols=165 Identities=16% Similarity=0.050 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006981 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (623)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~ 313 (623)
..+|..+...|.+.|++++|+..|++..+.+ +.+..+|..+...|.+.|++++|...+......... +...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 3455555566666666666666666655554 445555566666666666666666666555544322 34444444555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhH
Q 006981 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (623)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 393 (623)
+...++++.|...+....+.. +.+...+..+...|.+.|++++|.+.|++..+.. +.+..+|..+...|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 555555555555555554442 2344455555555555555555555555555432 23445555555555555555555
Q ss_pred HHHHHHHHH
Q 006981 394 MEVLSDMKS 402 (623)
Q Consensus 394 ~~l~~~m~~ 402 (623)
++.|++.++
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555554
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.36 E-value=1.4e-11 Score=125.77 Aligned_cols=278 Identities=13% Similarity=0.052 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHC----CC-CCCHH
Q 006981 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC----KLYTTLITTCAKSGKVDAMFEVFHEMVNA----GI-EPNVH 163 (623)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~ 163 (623)
..+..+...+...|++++|+..|+.+.+.+ +.+. .++..+...|...|++++|.+.|++..+. +- +....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 344556667888899999999999888864 3333 46778888888899999999888887643 11 22345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHccCC-----------------HHHHHHHHH
Q 006981 164 TYGALIDGCAKAGQVAKAFGAYGIMRSK----N-VKPDRVVFNALITACGQSGA-----------------VDRAFDVLA 221 (623)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~p~~~~~~~li~~~~~~g~-----------------~~~A~~~~~ 221 (623)
++..+...|...|++++|...|++.... + .+....++..+...|...|+ +++|.+.+.
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 6778888888888888888888876543 1 01123456666667777777 666666665
Q ss_pred HHhhCCC--CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 006981 222 EMNAEVH--PV-DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK-GT----PEVYTIAINCCSQTGDWEFACSVYD 293 (623)
Q Consensus 222 ~m~~~~~--~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~l~~ 293 (623)
+...... +. .....++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 5432100 00 011234455555566666666666666555432100 01 1244455555555555555555555
Q ss_pred HHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---
Q 006981 294 DMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK--- 369 (623)
Q Consensus 294 ~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--- 369 (623)
+....... .+. .....++..+...|...|++++|...+++..+..
T Consensus 288 ~al~~~~~~~~~-------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 288 RTLALAVELGER-------------------------------EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp HHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCH-------------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 44321000 000 0012344445555555555555555555443210
Q ss_pred -C-CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 006981 370 -L-KPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (623)
Q Consensus 370 -~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (623)
. .....++..+...|.+.|++++|.+.|++..+
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 0 00123455566666666666666666666554
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.36 E-value=1.9e-11 Score=124.80 Aligned_cols=279 Identities=16% Similarity=0.031 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHH
Q 006981 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSK----NV-KPDRV 198 (623)
Q Consensus 128 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~ 198 (623)
..+..+...+...|++++|...|++..+.+ +.+. .+|..+...|...|++++|...|++.... +- +....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 345556777888999999999999988764 2233 46788888888999999999988877542 11 12235
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCC---CCCCHHHHHHHHHHHHHcCC-----------------hHHHHHHHH
Q 006981 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHP---VDPDHITIGALMKACANAGQ-----------------VDRAREVYK 258 (623)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~~~~~~~ll~~~~~~g~-----------------~~~A~~~~~ 258 (623)
++..+...|...|++++|...+.+....... ......++..+...|...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 5667777778888888888877776542000 01113345555666666666 555555554
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-
Q 006981 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS- 336 (623)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~- 336 (623)
+..+. .... +..+ ...++..+...+...|++++|...+++..+....
T Consensus 208 ~al~~----------------------------~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 208 ENLKL----------------------------MRDL---GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHH----------------------------HHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----------------------------HHHc---CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 43221 0000 0000 1224444455555555555555555554432100
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-C----CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHC----
Q 006981 337 VG----IISYSSLMGACSNAKNWQKALELYEHMKSIKL-K----PTVSTMNALITALCDGDQLPKTMEVLSDMKSL---- 403 (623)
Q Consensus 337 ~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---- 403 (623)
.+ ..++..+...|...|++++|...+++..+... . ....++..+...|...|++++|.+.+++..+.
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 01 23667777788888888888888877654210 0 11467888999999999999999999987652
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 404 GLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (623)
Q Consensus 404 g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (623)
+-.+ ...++..+...+...|++++|.+.+++..+.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1111 2457788889999999999999999999874
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.35 E-value=1e-09 Score=107.17 Aligned_cols=219 Identities=14% Similarity=0.092 Sum_probs=155.6
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH-------HcCCh-------HHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 006981 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACA-------NAGQV-------DRAREVYKMIHKYNIKGTPEVYTIAINCC 279 (623)
Q Consensus 214 ~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 279 (623)
++|..+|++..... +.+...|..++..+. +.|++ ++|..+|++..+.-.+.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~~---p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL---GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45666666665431 234445555555543 34665 77888888877731245566788888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHH
Q 006981 280 SQTGDWEFACSVYDDMTKKGVIPDEV-FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS-NAKNWQK 357 (623)
Q Consensus 280 ~~~g~~~~A~~l~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~ 357 (623)
.+.|++++|..+|++..+.... +.. .|..+...+.+.|++++|..+|++..+.. +.+...|........ ..|+.++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888775322 222 67777777788888888888888887764 234445544433322 3689999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-LCP--NTITYSILLVACERKDDVEVGLMLLSQ 434 (623)
Q Consensus 358 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~ 434 (623)
|..+|++..+.. +.+...|..++..+.+.|++++|..+|++..... +.| ....|..++....+.|+.+.|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999887643 3467888999999999999999999999998863 455 466788888888899999999999999
Q ss_pred HHHC
Q 006981 435 AKED 438 (623)
Q Consensus 435 ~~~~ 438 (623)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.35 E-value=3.6e-11 Score=118.55 Aligned_cols=62 Identities=8% Similarity=-0.084 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 376 TMNALITALCDGDQLPKTMEVLSDMKSL----GLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
++..+...|...|++++|...+++..+. +-.+ ...++..+...+.+.|++++|...+++..+
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4444555555555555555555554331 0000 123455555566666666666666666554
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.34 E-value=7.2e-11 Score=116.35 Aligned_cols=202 Identities=15% Similarity=0.100 Sum_probs=122.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCC-CCHHH
Q 006981 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIE-PNVHT 164 (623)
Q Consensus 94 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~~~ 164 (623)
.+......+...|++++|...++++.+.. +.+ ..++..+...+...|++++|.+.+++..+. +-. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34455566778888888888888888764 333 356777888888888888888888776542 111 12456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCC--------------------HHHHHHH
Q 006981 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD----RVVFNALITACGQSGA--------------------VDRAFDV 219 (623)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~A~~~ 219 (623)
+..+...|...|++++|...+++..+... .++ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 77788888888888888888887654210 011 2356667777777777 7777777
Q ss_pred HHHHhhCCC--C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CC----CHHHHHHHHHHHHhcCCHHHHHHH
Q 006981 220 LAEMNAEVH--P-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI-KG----TPEVYTIAINCCSQTGDWEFACSV 291 (623)
Q Consensus 220 ~~~m~~~~~--~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~l 291 (623)
+.+...... + ......++..+...+...|++++|...+++..+... .+ ...++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 665432100 0 001123455556666666666666666665543210 00 112455555555555666665555
Q ss_pred HHHHH
Q 006981 292 YDDMT 296 (623)
Q Consensus 292 ~~~m~ 296 (623)
+++..
T Consensus 246 ~~~al 250 (338)
T 3ro2_A 246 YKKTL 250 (338)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.33 E-value=1.1e-10 Score=118.05 Aligned_cols=202 Identities=6% Similarity=-0.007 Sum_probs=93.3
Q ss_pred CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C--CCchHHHHHHH--HHHhhhHHHHHHH-----------HHhhh
Q 006981 23 HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGL-L--DMDKVYHARFF--NVCKSQKAIKEAF-----------RFFKL 86 (623)
Q Consensus 23 ~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~-~--~~~~~~~~~l~--~~~~~~~~~~~A~-----------~~~~~ 86 (623)
..+..-+..|-..++.+++++|..+++++.+.-. . ..+...+..+. +.....+.++.+. ..++.
T Consensus 10 ~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 89 (383)
T 3ulq_A 10 SSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLE 89 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHH
Confidence 3456667789999999999999999999875421 1 11222111111 1111223333333 33333
Q ss_pred CC--CCCHHH------HHHHHHHHHcCCChHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 006981 87 VP--NPTLST------FNMLMSVCASSKDSEGAFQVLRLVQEAGL-KA----DCKLYTTLITTCAKSGKVDAMFEVFHEM 153 (623)
Q Consensus 87 ~~--~~~~~~------~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m 153 (623)
+. +.+... +......+...|++++|+..++...+.-. .+ ...++..+...|...|++++|...+.+.
T Consensus 90 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~a 169 (383)
T 3ulq_A 90 IDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA 169 (383)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 21 011111 11133344555666666666665554200 01 1234555555555666666665555554
Q ss_pred HHCC--C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006981 154 VNAG--I----EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK----NVKP-DRVVFNALITACGQSGAVDRAFDVLAE 222 (623)
Q Consensus 154 ~~~g--~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 222 (623)
.+.- . .....+++.+...|...|++++|...|++..+. +-.+ ...++..+...|...|++++|.+.+.+
T Consensus 170 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 249 (383)
T 3ulq_A 170 YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249 (383)
T ss_dssp HHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4310 0 001234445555555555555555555544321 0000 012344444444444554444444444
Q ss_pred Hh
Q 006981 223 MN 224 (623)
Q Consensus 223 m~ 224 (623)
..
T Consensus 250 al 251 (383)
T 3ulq_A 250 AI 251 (383)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.32 E-value=2e-10 Score=116.09 Aligned_cols=227 Identities=9% Similarity=-0.013 Sum_probs=114.6
Q ss_pred HHcCCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHH--HHcCChhHHH-----------HHHHHHHHCCCCCCHHH
Q 006981 102 CASSKDSEGAFQVLRLVQEA--GLKAD--CKLYTTLITTC--AKSGKVDAMF-----------EVFHEMVNAGIEPNVHT 164 (623)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~--g~~~~--~~~~~~li~~~--~~~g~~~~A~-----------~~~~~m~~~g~~~~~~~ 164 (623)
+.+.+++++|..+.+++.+. .+..| ...|-.++..- .-.+.++.+. +.++.+... +.+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~--~~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK--QARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--THHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--CCCchh
Confidence 34567888888888777653 22233 23333333221 1123333333 555555432 111111
Q ss_pred ------HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC--
Q 006981 165 ------YGALIDGCAKAGQVAKAFGAYGIMRSK----NVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD-- 231 (623)
Q Consensus 165 ------~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-- 231 (623)
+......+...|++++|+..|++..+. +-.+ ...++..+...|...|++++|...+.+.........
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 122445566777888888877777653 1111 234566666777777777777777766543211110
Q ss_pred --CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC
Q 006981 232 --PDHITIGALMKACANAGQVDRAREVYKMIHKYNIK-GT----PEVYTIAINCCSQTGDWEFACSVYDDMTKK----GV 300 (623)
Q Consensus 232 --~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~ 300 (623)
....+++.+...|...|++++|...|++..+.... ++ ..++..+...|...|++++|.+.|++..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 11234555666666666777666666655432100 11 124555555566666666666665555441 11
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 301 -IPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (623)
Q Consensus 301 -~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (623)
.....++..+...+.+.|++++|...+++.
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 290 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKG 290 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 112334444555555555555555555544
No 69
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.32 E-value=3e-08 Score=105.96 Aligned_cols=394 Identities=12% Similarity=0.050 Sum_probs=267.2
Q ss_pred HHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCC---hHHHHHH
Q 006981 41 ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKD---SEGAFQV 114 (623)
Q Consensus 41 ~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~---~~~A~~~ 114 (623)
..+-+..|++....+ |.+......++..+.+.+.++.+..+|+++. +.....|...+..-.+.++ ++.+.++
T Consensus 48 ~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 455666788888888 6777777778888887788999999998764 6677889999999888888 9999999
Q ss_pred HHHHHHcC-CCCCHHHHHHHHHHHHHcCCh--------hHHHHHHHHHHH-CCC-CC-CHHHHHHHHHHHH---------
Q 006981 115 LRLVQEAG-LKADCKLYTTLITTCAKSGKV--------DAMFEVFHEMVN-AGI-EP-NVHTYGALIDGCA--------- 173 (623)
Q Consensus 115 ~~~m~~~g-~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~~-~~~~~~~li~~~~--------- 173 (623)
|++..... .+|++..|..-+....+.++. +...++|+.... .|. .+ +...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 99998764 248888888888777666654 334578877654 465 44 4568888887544
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHH----------ccCCHHHHHHHHHHHhhCCCCC----C-----
Q 006981 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFN---ALITACG----------QSGAVDRAFDVLAEMNAEVHPV----D----- 231 (623)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~---~li~~~~----------~~g~~~~A~~~~~~m~~~~~~~----~----- 231 (623)
..++++.+..+|++.+......-..+|. .+-.... ...+++.|...+.++.....++ +
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 2445788999999988532111123332 2222110 0112344555554432110111 0
Q ss_pred ------C-----C---HHHHHHHHHHHHHcC-------ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH-
Q 006981 232 ------P-----D---HITIGALMKACANAG-------QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC- 289 (623)
Q Consensus 232 ------~-----~---~~~~~~ll~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~- 289 (623)
| + ...|...+..--..+ ..+.+..+|+++.... +.....|-..+..+...|+.++|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 1 1 134444444322222 1234566788887764 667889999999999999999996
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------CC------------CHHHHHHHHHH
Q 006981 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI---------SV------------GIISYSSLMGA 348 (623)
Q Consensus 290 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~li~~ 348 (623)
++|++..... +.+...|...+....+.|+++.|.++|+.+.+... .| ...+|...+..
T Consensus 365 ~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 9999988642 33566677788888899999999999999876310 13 13467888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC-CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006981 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG-DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427 (623)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 427 (623)
..+.|+.+.|+.+|.+..+.-.......|...+..-.+. ++.+.|.++|+...+. .+-+...+...+......|+.+.
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHH
Confidence 888999999999999998751112233444333333344 4589999999998875 34466667788888888999999
Q ss_pred HHHHHHHHHHCC
Q 006981 428 GLMLLSQAKEDG 439 (623)
Q Consensus 428 a~~~~~~~~~~g 439 (623)
|+.+|++.++..
T Consensus 523 AR~lferal~~~ 534 (679)
T 4e6h_A 523 VKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHHTTTS
T ss_pred HHHHHHHHHHhc
Confidence 999999998753
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.32 E-value=4.6e-10 Score=100.25 Aligned_cols=166 Identities=16% Similarity=0.103 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006981 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206 (623)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 206 (623)
..+|..+...|.+.|++++|++.|++..+.. +-+..+|..+...|.+.|++++|+..+....... +.+...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 4445555555555555555555555554442 2244455555555555555555555555554432 2233444444444
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 006981 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (623)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (623)
+...++++.|.+.+.+.... .+.+...+..+...|.+.|++++|+..|++..+.+ +.+..+|..+...|.+.|+++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 55555555555555554432 12234444455555555555555555555555543 344455555555555555555
Q ss_pred HHHHHHHHHHhC
Q 006981 287 FACSVYDDMTKK 298 (623)
Q Consensus 287 ~A~~l~~~m~~~ 298 (623)
+|++.|++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 555555555443
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.32 E-value=6.8e-11 Score=122.87 Aligned_cols=215 Identities=11% Similarity=0.006 Sum_probs=167.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (623)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (623)
.++++++.++...... +.+...+..+...+...|++ ++|++.|++..+.. +.+..+|..+...|.+.|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3566677777655443 44677777888888888888 88888888887764 335778888888888888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcc---------CCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc--------C
Q 006981 186 GIMRSKNVKPDRVVFNALITACGQS---------GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA--------G 248 (623)
Q Consensus 186 ~~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~--------g 248 (623)
++..+. .|+...+..+...+... |++++|.+.|++..+.. +.+...+..+..+|... |
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD---VLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHhhccccc
Confidence 888776 46667777788888888 88888888888877642 34567788888888887 8
Q ss_pred ChHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006981 249 QVDRAREVYKMIHKYNIK---GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325 (623)
Q Consensus 249 ~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 325 (623)
++++|...|++..+.+ + .+...|..+...|...|++++|.+.|++..+.... +...+..+...+...|++++|.+
T Consensus 236 ~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 236 ISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999998888765 4 57888889999999999999999999988876543 56678888888888888988888
Q ss_pred HHHHH
Q 006981 326 ILQEA 330 (623)
Q Consensus 326 ~~~~~ 330 (623)
.+..+
T Consensus 314 ~~~~~ 318 (474)
T 4abn_A 314 SKGKT 318 (474)
T ss_dssp HTTTC
T ss_pred Hhccc
Confidence 77665
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.30 E-value=1.2e-10 Score=120.94 Aligned_cols=217 Identities=10% Similarity=-0.028 Sum_probs=188.0
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006981 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV-AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220 (623)
Q Consensus 142 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 220 (623)
.++++.+.+++..... +.+...+..+...|...|++ ++|++.|++..+.. +.+...|..+...|.+.|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3577788888776553 45788999999999999999 99999999998764 345789999999999999999999999
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--------C
Q 006981 221 AEMNAEVHPVDPDHITIGALMKACANA---------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT--------G 283 (623)
Q Consensus 221 ~~m~~~~~~~~~~~~~~~~ll~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g 283 (623)
++.... .|+...+..+...|... |++++|...|++..+.. +.+...|..+...|... |
T Consensus 161 ~~al~~----~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 161 SGALTH----CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHTT----CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHhh----CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccc
Confidence 999864 57778889999999999 99999999999999886 66789999999999998 9
Q ss_pred CHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006981 284 DWEFACSVYDDMTKKGVI--PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361 (623)
Q Consensus 284 ~~~~A~~l~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 361 (623)
++++|+..|++..+.... -+...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999886431 278889999999999999999999999998875 44677889999999999999999998
Q ss_pred HHHHH
Q 006981 362 YEHMK 366 (623)
Q Consensus 362 ~~~m~ 366 (623)
+.++.
T Consensus 315 ~~~~~ 319 (474)
T 4abn_A 315 KGKTK 319 (474)
T ss_dssp TTTCC
T ss_pred hcccc
Confidence 87764
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.27 E-value=1.9e-11 Score=119.35 Aligned_cols=176 Identities=14% Similarity=0.114 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC------CC
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEA-------GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------GI 158 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 158 (623)
..++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|...+++..+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 445666666666666666666666666542 11223445555566666666666666666555432 10
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHH
Q 006981 159 -EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (623)
Q Consensus 159 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 237 (623)
+....++..+...|...|++++|...|++..+.. ..... ...+....++
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------------------------~~~~~--~~~~~~~~~~ 156 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR----------------------------EKVLG--KDHPDVAKQL 156 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH----------------------------HHHHC--TTCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH----------------------------HHhcC--CCChHHHHHH
Confidence 1123344455555555555555555555443320 00000 0001112334
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhc------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 238 GALMKACANAGQVDRAREVYKMIHKY------N-IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (623)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (623)
..+...+...|++++|...|+++.+. + .+....++..+...|...|++++|.+.++++.+
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555555555554432 1 111233455566666666666666666665553
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.23 E-value=3e-10 Score=110.76 Aligned_cols=239 Identities=14% Similarity=0.057 Sum_probs=151.7
Q ss_pred CCchHHHHHHHHHHhhhHHHHHHHHHhhhCCC-----------CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-----
Q 006981 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-----------PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA----- 121 (623)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----- 121 (623)
|........++..+...|++++|..+|+++.. ....++..+...+...|++++|...++++.+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 34455666777788888999999999986532 23457888899999999999999999998864
Q ss_pred -CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 006981 122 -GL-KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------GIEP-NVHTYGALIDGCAKAGQVAKAFGAYGIMRSK- 191 (623)
Q Consensus 122 -g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 191 (623)
+- +....++..+...|...|++++|.+.|++..+. +-.| ...++..+...|...|++++|+..|++....
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 22 223568889999999999999999999998764 2122 3456788888899999999999999888754
Q ss_pred -----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC-----CCCCC-------HHHHHHHHHHHHHcCChHHH
Q 006981 192 -----NVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-----PVDPD-------HITIGALMKACANAGQVDRA 253 (623)
Q Consensus 192 -----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~~~~~-------~~~~~~ll~~~~~~g~~~~A 253 (623)
+..| ...++..+...+...|++++|.+.++++..... ...+. ...+..+...+...+.+.++
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 2122 234677777888888888888888888764200 00011 01111122222333344444
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (623)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (623)
...++...... +....++..+...|.+.|++++|.+.|++..+
T Consensus 264 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 264 GGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444443322 22334555566666666666666666655443
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.21 E-value=8.1e-09 Score=103.95 Aligned_cols=229 Identities=11% Similarity=-0.069 Sum_probs=158.6
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--C----CCHHHHH
Q 006981 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAREVYKMIHKYNI--K----GTPEVYT 273 (623)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~----~~~~~~~ 273 (623)
...+...|++++|...|.+....... .++ ..++..+...|...|+++.|...+++..+... . ....+++
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPF-VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGG-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhh-CCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456778888888888877653111 122 34566777888888888888888877654311 1 1245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 006981 274 IAINCCSQTGDWEFACSVYDDMTKK----GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKN-----QGISVGIISYS 343 (623)
Q Consensus 274 ~li~~~~~~g~~~~A~~l~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 343 (623)
.+...|...|++++|.+.|.+..+. +..+ ...++..+...|...|++++|...+.+..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 8888888889999988888877652 1111 124566777788888999999999888876 33 23367788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHcCCC---hhhHHHHHHHHHHCCCCCC-HHHHHHH
Q 006981 344 SLMGACSNAKNWQKALELYEHMKSIK----LKPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPN-TITYSIL 415 (623)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~-~~t~~~l 415 (623)
.+...|.+.|++++|...+++..+.. -+.....+..+...|...++ ..+|+..+++. +..|+ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 88889999999999999998876531 11223445666666777777 77777777762 22333 3456677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 006981 416 LVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 416 l~a~~~~g~~~~a~~~~~~~~~ 437 (623)
...+...|++++|...|++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7888999999999999988764
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.20 E-value=9.4e-09 Score=103.25 Aligned_cols=266 Identities=11% Similarity=-0.045 Sum_probs=146.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC----HHHHHHHHH
Q 006981 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRV----VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMK 242 (623)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~~ll~ 242 (623)
.+...|++++|...+++........+.. +++.+...+...|++++|.+.+.+....... .++ ..++..+..
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ-HDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHH
Confidence 3344555555555555544432111111 2333444455555555555555554321000 111 122344555
Q ss_pred HHHHcCChHHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--C--CHHHHHHHH
Q 006981 243 ACANAGQVDRAREVYKMIHKY----NIK--G-TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI--P--DEVFLSALI 311 (623)
Q Consensus 243 ~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~--p--~~~~~~~li 311 (623)
.+...|++++|...+++..+. +.. | ...++..+...+...|++++|...+++....... + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 566666666666666655432 111 1 1234555666667777777777777766543211 1 234556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHH
Q 006981 312 DFAGHAGKVEAAFEILQEAKNQGISVG--IISYS----SLMGACSNAKNWQKALELYEHMKSIKLKP---TVSTMNALIT 382 (623)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~ 382 (623)
..+...|++++|...+++.......++ ..... ..+..+...|++++|...+++..+....+ ....+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 667777777777777777654311111 11111 23344667888888888887776533211 1234566777
Q ss_pred HHHcCCChhhHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 383 ALCDGDQLPKTMEVLSDMKSL----GLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 383 ~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
.+...|++++|...+++.... |..++. .++..+..++...|+.++|...+++...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888888888888888876542 222222 2555566778888999999888887764
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.19 E-value=1.1e-08 Score=102.69 Aligned_cols=233 Identities=12% Similarity=0.049 Sum_probs=126.4
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHH
Q 006981 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCK----LYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPN----VHTYGAL 168 (623)
Q Consensus 98 li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~l 168 (623)
....+...|++++|...+++........+.. +++.+...+...|++++|.+.+++...... ..+ ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445566788888888888777654222222 455666777778888888888777654210 111 1235566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC--CHHHHHH
Q 006981 169 IDGCAKAGQVAKAFGAYGIMRSK----NVK--P-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP--DHITIGA 239 (623)
Q Consensus 169 i~~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~~~ 239 (623)
...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+.+.........+ ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 66777788888888777766542 211 2 1234455666677777777777777766542111111 1234555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCC-CHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHH
Q 006981 240 LMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYT-----IAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSAL 310 (623)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~-----~li~~~~~~g~~~~A~~l~~~m~~~~~~p---~~~~~~~l 310 (623)
+...+...|++++|...+++.......+ ....+. ..+..+...|++++|...+++.......+ ....+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 6666666777777777766654431111 101111 12233556666666666666554332111 01223344
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 006981 311 IDFAGHAGKVEAAFEILQEA 330 (623)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~ 330 (623)
...+...|++++|...++..
T Consensus 260 a~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 44455555555555555544
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.17 E-value=7.5e-09 Score=104.21 Aligned_cols=232 Identities=10% Similarity=0.003 Sum_probs=166.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC---CC-CHHHH
Q 006981 167 ALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD----RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV---DP-DHITI 237 (623)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~-~~~~~ 237 (623)
.....+...|++++|+..|++..+... .++ ..++..+...|...|+++.|...+.+........ .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344456788999999999988865411 122 3467778888888999999988888765421111 11 24467
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 006981 238 GALMKACANAGQVDRAREVYKMIHKY----NI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVIPDEVFL 307 (623)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~~p~~~~~ 307 (623)
+.+...|...|++++|...|++..+. +- .....++..+...|...|++++|.+.|++... .... ...++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHH
Confidence 77888899999999999999887653 11 11234678888899999999999999998876 4332 36678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHH
Q 006981 308 SALIDFAGHAGKVEAAFEILQEAKNQG----ISVGIISYSSLMGACSNAKN---WQKALELYEHMKSIKLKPT-VSTMNA 379 (623)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~-~~~~~~ 379 (623)
..+...+.+.|++++|...+++..+.. -+.....+..+...|...|+ +.+|...++... ..|+ ...+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHHH
Confidence 888889999999999999999887642 12223456666677778888 777777777632 1222 345667
Q ss_pred HHHHHHcCCChhhHHHHHHHHHH
Q 006981 380 LITALCDGDQLPKTMEVLSDMKS 402 (623)
Q Consensus 380 li~~~~~~g~~~~A~~l~~~m~~ 402 (623)
+...|.+.|++++|.+.|++..+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88899999999999999998764
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.17 E-value=3.3e-09 Score=94.27 Aligned_cols=24 Identities=4% Similarity=0.011 Sum_probs=9.3
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHH
Q 006981 376 TMNALITALCDGDQLPKTMEVLSD 399 (623)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~ 399 (623)
.+..+...+...|++++|.+.+++
T Consensus 146 ~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 146 VHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 333333333333333333333333
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.17 E-value=2.9e-09 Score=94.70 Aligned_cols=59 Identities=14% Similarity=0.019 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (623)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (623)
.+..+...+...|++++|.+.+++..+... .+...+..+...+...|++++|...++..
T Consensus 112 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 112 VRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333334444333333333221 12333333333334444444444444333
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.11 E-value=1.7e-08 Score=93.43 Aligned_cols=196 Identities=9% Similarity=0.000 Sum_probs=146.1
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (623)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (623)
.|+..|......+...|++++|+..|+...+...+++...+..+..++...|++++|++.|++..+.. +.+..+|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45677888888889999999999999998887643777777778889999999999999999988764 33567888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC---HHHHHH
Q 006981 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDR-------VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGA 239 (623)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~~~ 239 (623)
..|.+.|++++|+..|++..+.. +.+. ..|..+...+...|++++|.+.|.+..+. .|+ ...+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV----TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----SCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc----CCCcccHHHHHH
Confidence 99999999999999999888763 2334 45777778888889999999999988753 454 456666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006981 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (623)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 299 (623)
+...|...| ..+++.+...+ ..+...|.... ....+.+++|+..|++..+..
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 666665443 44455555544 33344444443 234566889999999888764
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.10 E-value=5.5e-09 Score=113.02 Aligned_cols=165 Identities=13% Similarity=0.058 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006981 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (623)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~ 313 (623)
..+++.|...|.+.|++++|++.|++..+.. +.+..+|+.+...|.+.|++++|+..|++..+.... +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4567777777777777777777777777765 455677777777777777777777777777765433 56677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhH
Q 006981 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (623)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 393 (623)
+.+.|++++|++.|++..+.. +-+...++.+..+|.+.|++++|.+.|++..+.. +-+...|..+...|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 777777777777777777654 3356677777778888888888888888777653 23566777788888888888888
Q ss_pred HHHHHHHHH
Q 006981 394 MEVLSDMKS 402 (623)
Q Consensus 394 ~~l~~~m~~ 402 (623)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777654
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.09 E-value=4.4e-09 Score=113.80 Aligned_cols=166 Identities=13% Similarity=0.065 Sum_probs=129.1
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (623)
+..+|+.+..++.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|++.|++..+.. +-+..+|+.+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45678888888888888888888888888764 4457788888888888888888888888887764 335778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCh
Q 006981 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (623)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~ 250 (623)
.|.+.|++++|++.|++..+.. +-+...|+.+..++.+.|++++|++.|++..+.. +-+...+..+...+...|++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~---P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK---PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHhhhhhHHHhcccH
Confidence 8888888888888888887653 3356778888888888888888888888877631 23456777888888888888
Q ss_pred HHHHHHHHHHHh
Q 006981 251 DRAREVYKMIHK 262 (623)
Q Consensus 251 ~~A~~~~~~~~~ 262 (623)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887776654
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.05 E-value=2.5e-08 Score=92.35 Aligned_cols=208 Identities=13% Similarity=0.011 Sum_probs=157.7
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006981 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203 (623)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 203 (623)
+.|+..+......+...|++++|.+.|++..+...+++...+..+..++.+.|++++|+..|++..+.. +.+...|..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 346678888999999999999999999999987633788888889999999999999999999999874 3356788889
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--CHHHHHH
Q 006981 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDH-------ITIGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEVYTI 274 (623)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ 274 (623)
...+...|++++|.+.+++..... +.+. ..|..+...+...|++++|...|+++.+.+ +. +...|..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~ 158 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV---PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYS 158 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHH
Confidence 999999999999999999988742 2233 457778888899999999999999998864 33 4567788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006981 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345 (623)
Q Consensus 275 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 345 (623)
+...|...| ...++++...+.. +...+..... ...+.+++|...+++..+.. +-+..+...+
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l 220 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLASS-NKEKYASEKA--KADAAFKKAVDYLGEAVTLS-PNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHhcccC-CHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 888776544 3445555544322 3444444432 34567899999999998864 2334444433
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.01 E-value=3.2e-09 Score=101.65 Aligned_cols=133 Identities=15% Similarity=0.082 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC------CC
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEA------GL-KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------GI 158 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 158 (623)
..++..+...+...|++++|+..++.+.+. +- +....++..+...|...|++++|.+.|++..+. .-
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 344555555566666666666666555533 11 112334555555555556666665555555432 00
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 006981 159 -EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK------NVKP-DRVVFNALITACGQSGAVDRAFDVLAEMN 224 (623)
Q Consensus 159 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (623)
+....++..+...|...|++++|...|++..+. +-.| ...++..+...+...|++++|.+.+++..
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 112334455555555555555555555555432 0011 12334444444555555555555554443
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.00 E-value=5.5e-09 Score=99.95 Aligned_cols=158 Identities=11% Similarity=0.075 Sum_probs=84.1
Q ss_pred HcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHH
Q 006981 139 KSGKVDAMFEVFHEMVNA-------GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK------NVKP-DRVVFNALI 204 (623)
Q Consensus 139 ~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~li 204 (623)
..|++++|...|++..+. ..+....++..+...|...|++++|+..|++.... +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456666666666655441 11223456677777777777777777777776543 1112 234556666
Q ss_pred HHHHccCCHHHHHHHHHHHhhCC-----CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------C-CCCCHHHH
Q 006981 205 TACGQSGAVDRAFDVLAEMNAEV-----HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY------N-IKGTPEVY 272 (623)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~ 272 (623)
..+...|++++|.+.+.+..... ...+....++..+...|...|++++|...|+++.+. . .+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 66666667777766666665420 000112334455555555556666666655555443 0 01123344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 273 TIAINCCSQTGDWEFACSVYDDMT 296 (623)
Q Consensus 273 ~~li~~~~~~g~~~~A~~l~~~m~ 296 (623)
..+...|...|++++|...+++..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455555555555555555555544
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.92 E-value=6.9e-08 Score=80.40 Aligned_cols=127 Identities=15% Similarity=0.150 Sum_probs=68.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006981 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (623)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (623)
|..+...+...|++++|..+++.+.+.+ +.+..++..+...+...|++++|...|+++.+.+ +.+...+..+...+.+
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4455555555566666666666555543 3345555555555555666666666665555443 2344455555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 006981 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (623)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (623)
.|++++|.+.++++.+.. +.+..++..+...+.+.|++++|.+.+.++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 555555555555555432 2234445555555555555555555555544
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.89 E-value=9.6e-08 Score=79.48 Aligned_cols=60 Identities=22% Similarity=0.232 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (623)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (623)
.+..+...+...|++++|...++.+.+.. +.+..++..+...+.+.|++++|...++++.
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 33333444444444444444444443332 2233344444444444444444444444443
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.87 E-value=1.8e-07 Score=88.79 Aligned_cols=179 Identities=13% Similarity=0.079 Sum_probs=91.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (623)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (623)
|+..|++..+.+ +++..++..+..++...|++++|++++.+.+..|- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555554443 34444445566666666666666666666554431 1244555566666666666666666666665
Q ss_pred hCCCCC-----CHHHHHHHHHHHHc--cC--CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 006981 190 SKNVKP-----DRVVFNALITACGQ--SG--AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (623)
Q Consensus 190 ~~g~~p-----~~~~~~~li~~~~~--~g--~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 260 (623)
+. .| +..+...|..++.. .| +..+|..+|+++... .|+..+...++.++.+.|++++|.+.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~----~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT----FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT----SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 54 33 23334444444222 22 566666666665542 233223333334556666666666666554
Q ss_pred HhcC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 261 HKYN---------IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 261 ~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
.+.. -+.++.+...+|......|+ +|.+++.++.+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 4320 02334444344444444454 555566655554
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.86 E-value=1.3e-07 Score=89.50 Aligned_cols=187 Identities=10% Similarity=0.041 Sum_probs=108.0
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-C-CCHH
Q 006981 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD---CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-E-PNVH 163 (623)
Q Consensus 89 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~-~~~~ 163 (623)
+.+...+-.+...+.+.|++++|+..|+.+.+.. +.+ ...+..+..+|.+.|++++|...|++..+... . ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 4455666666777777888888888888877653 223 56677777778888888888888888776521 1 1244
Q ss_pred HHHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCH
Q 006981 164 TYGALIDGCAK--------AGQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234 (623)
Q Consensus 164 ~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 234 (623)
++..+..++.+ .|++++|+..|++..+.. |+ ......+.. +...... -.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~--------------~~~~~~~------~~ 148 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQK--------------IRELRAK------LA 148 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHH--------------HHHHHHH------HH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHH--------------HHHHHHH------HH
Confidence 56666677777 777888888887777652 22 222211100 0000000 00
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhC
Q 006981 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEVYTIAINCCSQT----------GDWEFACSVYDDMTKK 298 (623)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~ 298 (623)
..+..+...|.+.|++++|...|+.+.+..... ....+..+..+|... |++++|...|+++.+.
T Consensus 149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 112344555666666666666666665543111 234555555555544 6666666666666654
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.86 E-value=9.8e-07 Score=83.75 Aligned_cols=184 Identities=16% Similarity=0.115 Sum_probs=100.7
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (623)
Q Consensus 216 A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 294 (623)
|...|++....+ .++..++..+..++...|++++|++++......+. ..+...+..++..+.+.|+.+.|.+.+++
T Consensus 85 a~~~l~~l~~~~---~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 NIEELENLLKDK---QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp CCHHHHHTTTTS---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 455555554321 34444445566666667777777777766655442 13455666667777777777777777777
Q ss_pred HHhCCCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 295 MTKKGVIP-----DEVFLSALIDFAG--HAG--KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (623)
Q Consensus 295 m~~~~~~p-----~~~~~~~li~~~~--~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (623)
|.+. .| +..+...+..++. ..| +..+|..+|+++.+.. |+..+...++.++.+.|++++|.+.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7654 33 2344444444422 223 6667777777765442 33233333444666777777777776655
Q ss_pred HhCC---------CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHH
Q 006981 366 KSIK---------LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410 (623)
Q Consensus 366 ~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 410 (623)
.+.- -+.|..+.-.+|......|+ +|.++++++.+. .|+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp 287 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHA 287 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCH
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCCh
Confidence 4310 02244455344444444454 666667666663 45543
No 92
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.85 E-value=7.4e-07 Score=85.46 Aligned_cols=232 Identities=8% Similarity=0.054 Sum_probs=108.3
Q ss_pred hhhhHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhH--HHHHHHHHhhhCC---CCCHHHHHHH
Q 006981 25 VSEQLHSYNRLIRQGRI-SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKEAFRFFKLVP---NPTLSTFNML 98 (623)
Q Consensus 25 ~~~~~~~~~~l~~~g~~-~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~---~~~~~~~~~l 98 (623)
...-...+..+++.|.+ ++|+++++.++..+ |........-..+....+ .+++++++++.+. +.+..+|+.-
T Consensus 32 y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R 109 (306)
T 3dra_A 32 YKQIMGLLLALMKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYR 109 (306)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHH
Confidence 33333444455555544 57888888887777 444444333333444444 5555665555432 3344455544
Q ss_pred HHHH----HcC---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh--HHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 99 MSVC----ASS---KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD--AMFEVFHEMVNAGIEPNVHTYGALI 169 (623)
Q Consensus 99 i~~~----~~~---~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~~~~~~~~~li 169 (623)
...+ ... +++++++.+++.+.+.. +-+..+|+.-.-.+.+.|+++ ++++.++++.+.. +.|..+|+.-.
T Consensus 110 ~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~ 187 (306)
T 3dra_A 110 QLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRF 187 (306)
T ss_dssp HHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4333 333 45555555555555543 334455555555555555555 5555555555543 23455555444
Q ss_pred HHHHhcCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHhhCCCCCCCCHHHHHHHHH
Q 006981 170 DGCAKAGQ------VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR-AFDVLAEMNAEVHPVDPDHITIGALMK 242 (623)
Q Consensus 170 ~~~~~~g~------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~~~~~~~~~~~~~ll~ 242 (623)
..+.+.+. ++++++.++++.... +-|...|+.+-..+.+.|+..+ +..+..++...+..-..+...+..+..
T Consensus 188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~ 266 (306)
T 3dra_A 188 FLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAK 266 (306)
T ss_dssp HHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHH
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 44444443 444555554444432 2344444444444444443222 222333222110000123344444444
Q ss_pred HHHHcCChHHHHHHHHHHH
Q 006981 243 ACANAGQVDRAREVYKMIH 261 (623)
Q Consensus 243 ~~~~~g~~~~A~~~~~~~~ 261 (623)
.|.+.|+.++|.++++.+.
T Consensus 267 ~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 267 IYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHH
Confidence 4444444444444444444
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.85 E-value=1.4e-07 Score=89.34 Aligned_cols=185 Identities=11% Similarity=0.019 Sum_probs=92.6
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC-HHHH
Q 006981 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD-RVVF 200 (623)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~~ 200 (623)
+...+-.+...+.+.|++++|...|+++.+.. +.+ ...+..+..+|.+.|++++|+..|++..+... .|. ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34455555556666666666666666665542 112 44555566666666666666666666655421 111 2334
Q ss_pred HHHHHHHHc--------cCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHH
Q 006981 201 NALITACGQ--------SGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271 (623)
Q Consensus 201 ~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 271 (623)
..+..++.. .|++++|...|+++... .|+ ......+.. +..+... ....
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~a~~~--------------~~~~~~~----~~~~ 150 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR----YPNHELVDDATQK--------------IRELRAK----LARK 150 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH----CTTCTTHHHHHHH--------------HHHHHHH----HHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH----CcCchhHHHHHHH--------------HHHHHHH----HHHH
Confidence 444555555 55566666666655543 122 111111100 0000000 0012
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHC
Q 006981 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIP--DEVFLSALIDFAGHA----------GKVEAAFEILQEAKNQ 333 (623)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p--~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~ 333 (623)
+..+...|.+.|++++|+..|+++.+..... ....+..+..+|... |++++|...++.+.+.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 3455666677777777777777766543211 123455555555544 5666666666666554
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.84 E-value=7.9e-08 Score=92.77 Aligned_cols=206 Identities=10% Similarity=0.048 Sum_probs=135.7
Q ss_pred CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHH
Q 006981 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY----NIKG-TPEVYTIAINCCSQTGDWE 286 (623)
Q Consensus 212 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~ 286 (623)
++++|...|.+. ...|...|++++|...|.+..+. +-++ ...+|+.+...|.+.|+++
T Consensus 32 ~~~~A~~~~~~a-----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 94 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV 94 (292)
T ss_dssp HHHHHHHHHHHH-----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 477777777665 33567788999998888877553 2111 1457888888899999999
Q ss_pred HHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCH
Q 006981 287 FACSVYDDMTKKGVI-PD----EVFLSALIDFAGHA-GKVEAAFEILQEAKNQGISV-G----IISYSSLMGACSNAKNW 355 (623)
Q Consensus 287 ~A~~l~~~m~~~~~~-p~----~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~ 355 (623)
+|+..+++....... .+ ..++..+...|... |++++|+..+++..+..... + ..+++.+...|.+.|++
T Consensus 95 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 998888877653110 01 34677777788885 88888888888776532110 1 34677778888888888
Q ss_pred HHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHH------HHHHHHHHHH--h
Q 006981 356 QKALELYEHMKSIKLKPTV------STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI------TYSILLVACE--R 421 (623)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~------t~~~ll~a~~--~ 421 (623)
++|...|++..+....... ..|..+..++...|++++|...|++..+ +.|+.. .+..++.++. .
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~ 252 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGD 252 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCC
Confidence 8888888888765432221 1566677778888888888888888765 234321 2344555554 3
Q ss_pred cCCHHHHHHHHHHHH
Q 006981 422 KDDVEVGLMLLSQAK 436 (623)
Q Consensus 422 ~g~~~~a~~~~~~~~ 436 (623)
.+++++|...|+++.
T Consensus 253 ~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 253 SEQLSEHCKEFDNFM 267 (292)
T ss_dssp TTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhccCC
Confidence 456777777775543
No 95
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.84 E-value=2.1e-06 Score=89.03 Aligned_cols=356 Identities=12% Similarity=0.048 Sum_probs=163.6
Q ss_pred cC-CHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHcCCC-hHHHHH
Q 006981 38 QG-RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVCASSKD-SEGAFQ 113 (623)
Q Consensus 38 ~g-~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~-~~~A~~ 113 (623)
.| +++.|+.+|+.+...- |. |..+.+..+|++.. .|++..|...+....+.++ .+....
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~---------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS---------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT---------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred cCcchHHHHHHHHHHHHHC--CC---------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 45 3677777777776542 21 44677777777654 3677788777777666553 345666
Q ss_pred HHHHHHHc-CC-CCCHHHHHHHHHHHH----HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 114 VLRLVQEA-GL-KADCKLYTTLITTCA----KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (623)
Q Consensus 114 ~~~~m~~~-g~-~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (623)
+|+..... |. +.+...|...+..+. ..++++.+.++|++.+......-...|...... .+......+.++..+
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~ 148 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGD 148 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHH
Confidence 77766653 32 335666776666543 235677788888888764211111222222211 111111122222211
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcC-------ChHHHHHHHHHH
Q 006981 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG-------QVDRAREVYKMI 260 (623)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g-------~~~~A~~~~~~~ 260 (623)
.. +.+..|..++..+.....+ .+...|...+..-...+ ..+.+..+|+++
T Consensus 149 ~~---------------------~~y~~ar~~y~~~~~~~~~--~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~a 205 (493)
T 2uy1_A 149 TL---------------------PIFQSSFQRYQQIQPLIRG--WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYI 205 (493)
T ss_dssp HH---------------------HHHHHHHHHHHHHHHHHHT--CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred Hh---------------------HHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHH
Confidence 10 1112222222221110000 01223333333211110 022344555555
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------
Q 006981 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ------- 333 (623)
Q Consensus 261 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------- 333 (623)
.... +.++..|...+..+.+.|+.+.|..++++.... |+...+.. .|+.....++. ++.+.+.
T Consensus 206 l~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~ 275 (493)
T 2uy1_A 206 LDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAE 275 (493)
T ss_dssp HHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC-----
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccc
Confidence 5542 444555665566566666666666666665554 22211111 11111111111 1111110
Q ss_pred --C---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC-CChhhHHHHHHHHHHCCCCC
Q 006981 334 --G---ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG-DQLPKTMEVLSDMKSLGLCP 407 (623)
Q Consensus 334 --~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p 407 (623)
+ ......+|...+..+.+.+..+.|..+|++. +.. ..+...|......-... ++.+.|..+|+...+.- +-
T Consensus 276 ~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~ 352 (493)
T 2uy1_A 276 SAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PD 352 (493)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TT
T ss_pred hhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CC
Confidence 0 0011244555566666666777777777777 321 12334443222222222 25777777777776642 11
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006981 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452 (623)
Q Consensus 408 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 452 (623)
+...+...++-..+.|+.+.|+.+|+++. .....|...++
T Consensus 353 ~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~ 392 (493)
T 2uy1_A 353 STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIE 392 (493)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 23344555665666777777777777652 23455555554
No 96
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.83 E-value=6.1e-08 Score=85.63 Aligned_cols=165 Identities=12% Similarity=0.140 Sum_probs=97.0
Q ss_pred cCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCC--CCHHHHHHHH
Q 006981 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PTLSTFNMLM 99 (623)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li 99 (623)
|............+.+.|++++|...|++..+.+ |.+...+..++..+...|++++|+..|++... |+...+..+.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~ 80 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIA 80 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHH
Confidence 3334445555666778888888888888777665 55666666677777777777777777776642 2333332221
Q ss_pred HH-HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 006981 100 SV-CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP-NVHTYGALIDGCAKAGQ 177 (623)
Q Consensus 100 ~~-~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~ 177 (623)
.. +...+....|+..++...+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred HHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence 11 112222334566666666543 3346666666666667777777777776666553211 23456666666666666
Q ss_pred HHHHHHHHHHHH
Q 006981 178 VAKAFGAYGIMR 189 (623)
Q Consensus 178 ~~~A~~~~~~m~ 189 (623)
.++|...|++..
T Consensus 160 ~~~A~~~y~~al 171 (176)
T 2r5s_A 160 GNAIASKYRRQL 171 (176)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 666666666544
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.81 E-value=1.2e-07 Score=86.27 Aligned_cols=193 Identities=9% Similarity=-0.012 Sum_probs=133.1
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcC
Q 006981 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASS 105 (623)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 105 (623)
...+.....+++.|++++|+..|++..+.+ |.+...+.... ... .........+.+...+.+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~--~~~-------------~~~~~~~~~~~lg~~~~~~ 67 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTN--VDK-------------NSEISSKLATELALAYKKN 67 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHH--SCT-------------TSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhh--hcc-------------hhhhhHHHHHHHHHHHHHC
Confidence 344445566779999999999999999876 44433322100 000 0011223345577888999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHH
Q 006981 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ--VAKAFG 183 (623)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~ 183 (623)
|++++|+..|+...+.. +.+...+..+..++...|++++|...|++..+.. +.+..+|..+...|...|+ ...+..
T Consensus 68 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 68 RNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999998875 5578889999999999999999999999998874 4467888888888766654 445566
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHH
Q 006981 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243 (623)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~ 243 (623)
.+..... ..|....+.....++...|++++|...|++..+ +.|+......+.+.
T Consensus 146 ~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~----l~P~~~~~~~l~~i 199 (208)
T 3urz_A 146 DYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL----RFPSTEAQKTLDKI 199 (208)
T ss_dssp HHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT----TSCCHHHHHHHHHH
T ss_pred HHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCHHHHHHHHHH
Confidence 6655542 223333444455666778999999999999875 46777766666553
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.81 E-value=7.9e-08 Score=104.39 Aligned_cols=169 Identities=8% Similarity=-0.038 Sum_probs=111.9
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHc
Q 006981 36 IRQGRISECIDLLEDME--------RKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCAS 104 (623)
Q Consensus 36 ~~~g~~~~A~~l~~~m~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 104 (623)
...|++++|++.|++.. +.. |.+...+..++..+...|++++|+..|++.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 56778888888888777 443 4555556666666667777777777776653 4566677777777777
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006981 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (623)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (623)
.|++++|+..|++..+.. +.+...+..+..++.+.|++++ .+.|++..+.. +.+...|..+..++.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777777654 3455667777777777777777 77777776653 33566777777777777777777777
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHccC
Q 006981 185 YGIMRSKNVKPD-RVVFNALITACGQSG 211 (623)
Q Consensus 185 ~~~m~~~g~~p~-~~~~~~li~~~~~~g 211 (623)
|++..+. .|+ ...+..+..++...+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC---
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccC
Confidence 7776654 333 445555555554433
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.80 E-value=2.2e-07 Score=84.58 Aligned_cols=136 Identities=10% Similarity=-0.047 Sum_probs=57.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 006981 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (623)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 389 (623)
+...+.+.|++++|...+++..+.. +-+...+..+..+|...|++++|...|++..+.. +.+...|..+...|...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 3344444445555555444444432 2234444445555555555555555555544432 1234444444444433332
Q ss_pred --hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 390 --LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (623)
Q Consensus 390 --~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 451 (623)
.+.+...++.... ..|....+.....++...|++++|...|++.++ +.|+......+.
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 2223333333221 111122222233334445555555555555554 345544444433
No 100
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.80 E-value=2.7e-07 Score=88.98 Aligned_cols=211 Identities=12% Similarity=0.065 Sum_probs=100.5
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHccCCHHHH
Q 006981 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK----NVKPD-RVVFNALITACGQSGAVDRA 216 (623)
Q Consensus 142 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A 216 (623)
++++|...|++. ...|...|++++|...|.+.... |-+++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666655 23456667777777777665432 21111 34555666666666666666
Q ss_pred HHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHH
Q 006981 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-GDWEFACSVYDDM 295 (623)
Q Consensus 217 ~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m 295 (623)
...+++..... ...|+...+ ..+++.+...|... |++++|+..|++.
T Consensus 97 ~~~~~~Al~l~-----------------~~~g~~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~~~A 144 (292)
T 1qqe_A 97 VDSLENAIQIF-----------------THRGQFRRG---------------ANFKFELGEILENDLHDYAKAIDCYELA 144 (292)
T ss_dssp HHHHHHHHHHH-----------------HHTTCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----------------HHcCCHHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 66665544310 000111000 12344444444443 5555555555444
Q ss_pred HhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 296 TKKGVI-PD----EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI------ISYSSLMGACSNAKNWQKALELYEH 364 (623)
Q Consensus 296 ~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~ 364 (623)
.+.... .+ ..++..+...+.+.|++++|...|++..+....... ..+..+..++...|++++|...|++
T Consensus 145 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 224 (292)
T 1qqe_A 145 GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE 224 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 332100 00 223445555555555566665555555554322111 1345555556666666666666666
Q ss_pred HHhCCCCCCH------HHHHHHHHHHH--cCCChhhHHHHHHHHH
Q 006981 365 MKSIKLKPTV------STMNALITALC--DGDQLPKTMEVLSDMK 401 (623)
Q Consensus 365 m~~~~~~~~~------~~~~~li~~~~--~~g~~~~A~~l~~~m~ 401 (623)
..+.. |+. ..+..++.+|. ..+++++|+..|+++.
T Consensus 225 al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 225 GQSED--PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp GGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHhhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 55421 221 12333444443 3455666666665544
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.79 E-value=8.8e-08 Score=82.04 Aligned_cols=143 Identities=8% Similarity=-0.060 Sum_probs=108.8
Q ss_pred HHHHHhhhHHHHHHHHHhhhCCCC---CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 006981 67 FFNVCKSQKAIKEAFRFFKLVPNP---TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (623)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 143 (623)
++.+..+.|++++|+..+....+. +...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 455667789999999999876543 44567778888999999999999999998875 55788999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 006981 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA-YGIMRSKNVKPDRVVFNALITACGQSGA 212 (623)
Q Consensus 144 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~p~~~~~~~li~~~~~~g~ 212 (623)
++|...|++..+.. +-+..+|..+...|.+.|+.++|.+. +++..+.. +-+..+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 99999999988864 34678888999999999998776655 47776653 3356667666666655553
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.77 E-value=2e-07 Score=89.66 Aligned_cols=156 Identities=12% Similarity=0.113 Sum_probs=76.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHHHHHHH-HHHHcCC
Q 006981 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLM-SVCASSK 106 (623)
Q Consensus 30 ~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li-~~~~~~~ 106 (623)
.....+.+.|++++|...|++..+.. |.+...+..++..+...|++++|...|+++. .|+........ ..+...+
T Consensus 122 ~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~ 199 (287)
T 3qou_A 122 QQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQA 199 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhc
Confidence 33344445556666666665555554 4444445555555555555555555555543 22322221111 1233444
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE-PNVHTYGALIDGCAKAGQVAKAFGAY 185 (623)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (623)
+.+.|...+++..+.. +.+...+..+...+...|++++|.+.|.++.+.... .+...+..++..+...|+.++|...|
T Consensus 200 ~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~ 278 (287)
T 3qou_A 200 ADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXY 278 (287)
T ss_dssp TSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHH
Confidence 4555555555555443 334455555555555555555555555555544211 01344555555555555555555555
Q ss_pred HHH
Q 006981 186 GIM 188 (623)
Q Consensus 186 ~~m 188 (623)
++.
T Consensus 279 r~a 281 (287)
T 3qou_A 279 RRQ 281 (287)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.77 E-value=1.1e-06 Score=80.23 Aligned_cols=174 Identities=14% Similarity=-0.023 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 006981 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG----QVAKAFGAY 185 (623)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 185 (623)
+|++.|+...+.| ++..+..|...|...+++++|++.|++..+.| +...+..|...|.. + ++++|+..|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3555566655543 55566666666666777777777777766653 45556666666665 5 677777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCC---HHHHHHHHHHHHH----cCChHHHH
Q 006981 186 GIMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACAN----AGQVDRAR 254 (623)
Q Consensus 186 ~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~---~~~~~~ll~~~~~----~g~~~~A~ 254 (623)
++..+.| +...+..|...|.. .++.++|.+.|.+.... .++ ...+..|...|.. .+++++|.
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 149 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD----SESDAAVDAQMLLGLIYASGVHGPEDDVKAS 149 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc----CCCcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 7766554 45556666666655 56677777777666543 221 4555666666666 55666666
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 006981 255 EVYKMIHKYNIKGTPEVYTIAINCCSQT-G-----DWEFACSVYDDMTKKG 299 (623)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~l~~~m~~~~ 299 (623)
..|++..+. +.+...+..|...|... | ++++|...|+...+.|
T Consensus 150 ~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 150 EYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 666666654 12234555555555432 2 5666666666665554
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.75 E-value=8.9e-08 Score=104.01 Aligned_cols=154 Identities=16% Similarity=0.043 Sum_probs=80.0
Q ss_pred HHcCChhHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006981 138 AKSGKVDAMFEVFHEMV--------NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (623)
Q Consensus 138 ~~~g~~~~A~~~~~~m~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (623)
...|++++|++.+++.. +.. +.+...+..+...|.+.|++++|+..|++..+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 34455555555555554 221 2234445555555555555555555555555432 2244455555555555
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006981 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (623)
Q Consensus 210 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 289 (623)
.|++++|.+.|++..+.. +.+...+..+..+|.+.|++++ ...|+++.+.+ +.+...|..+...+.+.|++++|+
T Consensus 480 ~g~~~~A~~~~~~al~l~---P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF---PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS---TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 555555555555554421 1233445555555555566555 55555555544 344555555555666666666666
Q ss_pred HHHHHHHhC
Q 006981 290 SVYDDMTKK 298 (623)
Q Consensus 290 ~l~~~m~~~ 298 (623)
+.|++..+.
T Consensus 555 ~~~~~al~l 563 (681)
T 2pzi_A 555 RTLDEVPPT 563 (681)
T ss_dssp HHHHTSCTT
T ss_pred HHHHhhccc
Confidence 665555443
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.74 E-value=3.3e-07 Score=88.07 Aligned_cols=163 Identities=10% Similarity=0.000 Sum_probs=90.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-
Q 006981 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI- 204 (623)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li- 204 (623)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++.... .|+........
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 34455555566666666666666666665543 234555666666666666666666666665544 23333222221
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhc
Q 006981 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT--PEVYTIAINCCSQT 282 (623)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~ 282 (623)
..+...++.++|...+++..... +.+...+..+...+...|++++|...|..+.+.+ +.+ ...+..++..|...
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~---P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN---PEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHH
T ss_pred HHHHhhcccCccHHHHHHHHhcC---CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHc
Confidence 22444455555666665555431 2345555666666666666666666666666554 222 45666666666666
Q ss_pred CCHHHHHHHHHHH
Q 006981 283 GDWEFACSVYDDM 295 (623)
Q Consensus 283 g~~~~A~~l~~~m 295 (623)
|+.++|...+++.
T Consensus 269 g~~~~a~~~~r~a 281 (287)
T 3qou_A 269 GTGDALASXYRRQ 281 (287)
T ss_dssp CTTCHHHHHHHHH
T ss_pred CCCCcHHHHHHHH
Confidence 6666666666554
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.71 E-value=2.1e-07 Score=82.16 Aligned_cols=160 Identities=12% Similarity=0.089 Sum_probs=92.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHh
Q 006981 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGH 316 (623)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~-~~~ 316 (623)
..+...+.+.|++++|...|++..+.+ +.+...+..+...+.+.|++++|...|++..... |+...+...... +..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 344555666777777777777665544 4456667777777777777777777777665443 233222211111 111
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChhhHHH
Q 006981 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALITALCDGDQLPKTME 395 (623)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~ 395 (623)
.+....|...+++..+.. +-+...+..+...+.+.|++++|...|+++.+....+ +...+..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 122223556666655543 2345666666667777777777777777766553222 24466666667777777777777
Q ss_pred HHHHHH
Q 006981 396 VLSDMK 401 (623)
Q Consensus 396 l~~~m~ 401 (623)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.71 E-value=8.6e-06 Score=78.04 Aligned_cols=113 Identities=9% Similarity=0.017 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CCHH
Q 006981 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG--KVDAMFEVFHEMVNAGIEPNVHTYGALIDGC----AKA---GQVA 179 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----~~~---g~~~ 179 (623)
++|+.+++.++..+ +-+...|+.--..+...+ +++++++.++.+.... +-+..+|+.--..+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 44555555555443 223344444444444444 5555555555554432 22333343332222 222 3444
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH--HHHHHHHHHh
Q 006981 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD--RAFDVLAEMN 224 (623)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~ 224 (623)
+++..++++.+.. +-+..+|+.-.-.+.+.|.++ ++++.++++.
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i 173 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVI 173 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHH
Confidence 4444444444332 223344443333333334333 4444444443
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.70 E-value=1.6e-06 Score=78.95 Aligned_cols=176 Identities=11% Similarity=-0.033 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC----CHHHHHHHH
Q 006981 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG----AVDRAFDVL 220 (623)
Q Consensus 145 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~~ 220 (623)
+|++.|++..+.| +..++..|...|...+++++|+..|++..+.| +...+..|...|.. + +.++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4667777777654 67777778888888888888888888887765 56666667777766 5 788888888
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHh----cCCHHHHHHH
Q 006981 221 AEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIK-GTPEVYTIAINCCSQ----TGDWEFACSV 291 (623)
Q Consensus 221 ~~m~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l 291 (623)
.+.... .+...+..|...|.. .+++++|..+|++..+.+.. ..+.++..|...|.. .+++++|...
T Consensus 77 ~~A~~~-----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 77 EKAVEA-----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHT-----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHC-----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 777652 345566666666665 67777888887777766521 125666777777766 6677777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 006981 292 YDDMTKKGVIPDEVFLSALIDFAGHA-G-----KVEAAFEILQEAKNQG 334 (623)
Q Consensus 292 ~~~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~a~~~~~~~~~~~ 334 (623)
|++..+.+- +...+..+...|... | +.++|...|+...+.|
T Consensus 152 ~~~A~~~~~--~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 152 FKGSSSLSR--TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHTSC--TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCC--CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 777766521 233445555555432 2 6677777777666655
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.68 E-value=2.2e-06 Score=78.92 Aligned_cols=202 Identities=9% Similarity=-0.016 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHH
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK-AD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTY 165 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~ 165 (623)
...+..+...+.+.|++++|+..|+.+.+.... |. ...+..+..+|.+.|++++|+..|+++.+.. |+. .++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHH
Confidence 344455556666677777777777776664321 11 2455566667777777777777777766542 221 133
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCH-HHHHHHHHHH
Q 006981 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKAC 244 (623)
Q Consensus 166 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~~~ll~~~ 244 (623)
..+..++.+.+.. .+ ..|..+...+...|+.++|...|+++... .|+. .+..+....
T Consensus 82 ~~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~P~~~~a~~a~~~l- 139 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG----YPNSQYTTDATKRL- 139 (225)
T ss_dssp HHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT----CTTCTTHHHHHHHH-
T ss_pred HHHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH----CcCChhHHHHHHHH-
Confidence 3333333332210 00 01112222334456777888888777754 2321 122111100
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHH
Q 006981 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEA 322 (623)
Q Consensus 245 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~ 322 (623)
..+...+. .....+...|.+.|++++|+..|+++.+...... ...+..+..++.+.|+.++
T Consensus 140 ---------~~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~ 202 (225)
T 2yhc_A 140 ---------VFLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQ 202 (225)
T ss_dssp ---------HHHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ---------HHHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHH
Confidence 00000000 1123455667777777777777777776532211 1356667777777777777
Q ss_pred HHHHHHHHHHCC
Q 006981 323 AFEILQEAKNQG 334 (623)
Q Consensus 323 a~~~~~~~~~~~ 334 (623)
|.+.++.+...+
T Consensus 203 A~~~~~~l~~~~ 214 (225)
T 2yhc_A 203 AEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhhC
Confidence 777777776654
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.66 E-value=2.2e-06 Score=78.92 Aligned_cols=203 Identities=9% Similarity=-0.028 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HH
Q 006981 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE-P-NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV----VF 200 (623)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~ 200 (623)
...+..+...+.+.|++++|...|+++.+.... | ....+..+..+|.+.|++++|+..|++..+.. |+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHH
Confidence 344555666677777777777777777764211 1 13456666777777777777777777776542 2211 23
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006981 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280 (623)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 280 (623)
..+..++...+.. .+. .+..+...+...|++++|...|+.+.+.. +.+..++.+....-
T Consensus 82 ~~~g~~~~~~~~~-----~~~--------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~- 140 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----ALQ--------------GFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV- 140 (225)
T ss_dssp HHHHHHHHHHHC---------------------------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH-
T ss_pred HHHHHHHHhhhhh-----hhh--------------hhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH-
Confidence 3333333322210 000 11122233445678888888888888764 33333332221110
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 006981 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV--GIISYSSLMGACSNAKNWQKA 358 (623)
Q Consensus 281 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A 358 (623)
.+...+. .....+...+.+.|++++|...|+.+.+..... ....+..+..+|.+.|+.++|
T Consensus 141 ---------~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 141 ---------FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp ---------HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ---------HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 0111110 112345677889999999999999998864221 135688899999999999999
Q ss_pred HHHHHHHHhCC
Q 006981 359 LELYEHMKSIK 369 (623)
Q Consensus 359 ~~~~~~m~~~~ 369 (623)
.+.++.+...+
T Consensus 204 ~~~~~~l~~~~ 214 (225)
T 2yhc_A 204 EKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhhC
Confidence 99999988764
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.63 E-value=6.9e-07 Score=95.12 Aligned_cols=148 Identities=11% Similarity=-0.026 Sum_probs=62.8
Q ss_pred HHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 006981 75 KAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151 (623)
Q Consensus 75 ~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 151 (623)
|++++|...|++.. +.+...|..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.|+
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34455555554432 2234444555555555555555555555554432 2334444455555555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc---CCHHHHHHHHHHHhh
Q 006981 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS---GAVDRAFDVLAEMNA 225 (623)
Q Consensus 152 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~ 225 (623)
+..+.. +.+...+..+...|.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 544432 2234444445555555555555555555444432 22334444444444444 455555555544443
No 112
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.61 E-value=1.6e-07 Score=80.44 Aligned_cols=137 Identities=9% Similarity=-0.024 Sum_probs=59.9
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 006981 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218 (623)
Q Consensus 139 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 218 (623)
..|++++|++.+....... +.+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|..
T Consensus 9 ~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHH
Confidence 3344455554444443221 1112233344445555555555555555554432 2234445555555555555555555
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHH-HHHHHhcCCCCCHHHHHHHHHHHHh
Q 006981 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV-YKMIHKYNIKGTPEVYTIAINCCSQ 281 (623)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~li~~~~~ 281 (623)
.|++..+.. +.+..++..+...|.+.|+.++|.+. +++..+.. |.++.+|......+..
T Consensus 87 ~~~~al~~~---p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 87 CYRRSVELN---PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHHHHC---TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 555544321 12234444455555555554443332 34444433 3344444444443333
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.61 E-value=1.1e-06 Score=93.57 Aligned_cols=154 Identities=12% Similarity=-0.038 Sum_probs=105.2
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006981 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (623)
Q Consensus 210 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 289 (623)
.|++++|.+.+++..+.. +.+...+..+...+.+.|++++|...|++..+.+ +.+...+..+...|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR---PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 467788888888876531 3346677788888888888888888888888765 556778888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 006981 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA---KNWQKALELYEHMK 366 (623)
Q Consensus 290 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~ 366 (623)
+.+++..+.... +...+..+...+.+.|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..
T Consensus 78 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 888888776433 56777778888888888888888888877764 34567777788888888 88888888888877
Q ss_pred hCC
Q 006981 367 SIK 369 (623)
Q Consensus 367 ~~~ 369 (623)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 654
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.59 E-value=3.2e-06 Score=76.86 Aligned_cols=126 Identities=14% Similarity=-0.015 Sum_probs=102.7
Q ss_pred HHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 006981 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145 (623)
Q Consensus 66 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 145 (623)
.++..+...|++++|+..|++..+++...|..+...+...|++++|+..++...+.. +.+...+..+..+|...|++++
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~ 89 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 89 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHH
Confidence 445556667888999999988887888889999999999999999999999988775 5577888889999999999999
Q ss_pred HHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006981 146 MFEVFHEMVNAGIE--------------P-NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (623)
Q Consensus 146 A~~~~~~m~~~g~~--------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (623)
|.+.|++..+.... | +...+..+...|.+.|++++|...|++..+..
T Consensus 90 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 90 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999998875311 1 12678888888899999999999999888763
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.56 E-value=9.9e-07 Score=85.70 Aligned_cols=229 Identities=12% Similarity=-0.009 Sum_probs=147.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 006981 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116 (623)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 116 (623)
..|++++|.+++++..+... .. .+...+++++|...|.+ ....+...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~--~~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK--TS---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC--CC---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc--cc---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHH
Confidence 45778899999988776432 10 01112456666666554 3556777888888888887
Q ss_pred HHHHcCC---CC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 117 LVQEAGL---KA--DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEPN--VHTYGALIDGCAKAGQVAKAFGAY 185 (623)
Q Consensus 117 ~m~~~g~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~--~~~~~~li~~~~~~g~~~~A~~~~ 185 (623)
+..+... .+ -..+|+.+...|.+.|++++|+..|++..+. | .+. ..+++.+...|.+ |++++|+..|
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 7764311 11 1347788888888888888888888876542 2 121 3567778888877 8888888888
Q ss_pred HHHHhC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC--CCCCC-HHHHHHHHHHHHHcCChHHHHHHH
Q 006981 186 GIMRSK----NVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVH--PVDPD-HITIGALMKACANAGQVDRAREVY 257 (623)
Q Consensus 186 ~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~ 257 (623)
++.... |-.+ ...+++.+...+.+.|++++|...|++...... +..+. ...+..+...+...|++++|...|
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 877643 1100 135677788888888999998888887764211 11222 235666777777889999999999
Q ss_pred HHHHhcCCC--CC--HHHHHHHHHHHHhcCCHHHHHHH
Q 006981 258 KMIHKYNIK--GT--PEVYTIAINCCSQTGDWEFACSV 291 (623)
Q Consensus 258 ~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~A~~l 291 (623)
++.. .... .. ......++..+ ..|+.+.+.++
T Consensus 219 ~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 219 RESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 8887 4211 11 12344555555 56777666653
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.50 E-value=1.9e-06 Score=83.74 Aligned_cols=199 Identities=13% Similarity=0.045 Sum_probs=113.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 006981 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254 (623)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 254 (623)
.|++++|.+++++..+.. +.. + +...+++++|...|.+. ...|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a-----------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA-----------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH-----------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHH
Confidence 466777777777665431 110 0 11135666666666543 34566777888887
Q ss_pred HHHHHHHhcCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C-CCC--HHHHHHHHHHHHhcCCHHHHH
Q 006981 255 EVYKMIHKYNIK-----GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG--V-IPD--EVFLSALIDFAGHAGKVEAAF 324 (623)
Q Consensus 255 ~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~--~-~p~--~~~~~~li~~~~~~g~~~~a~ 324 (623)
..|.+..+.... .-..+|+.+...|.+.|++++|+..|++..+.- . .|. ..++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 777766543110 012466777777777777777777777654321 0 111 2345556666666 7777777
Q ss_pred HHHHHHHHCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHcCCChhhHH
Q 006981 325 EILQEAKNQGIS-----VGIISYSSLMGACSNAKNWQKALELYEHMKSI----KLKPT-VSTMNALITALCDGDQLPKTM 394 (623)
Q Consensus 325 ~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~ 394 (623)
..+++..+.... ....+++.+...|.+.|++++|...|++..+. +..+. ...+..+...+...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 777766543100 01345666667777777777777777766542 11111 124555555666667777777
Q ss_pred HHHHHHH
Q 006981 395 EVLSDMK 401 (623)
Q Consensus 395 ~l~~~m~ 401 (623)
..|++..
T Consensus 216 ~~~~~al 222 (307)
T 2ifu_A 216 KCVRESY 222 (307)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 7777766
No 117
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.49 E-value=7.8e-05 Score=72.20 Aligned_cols=183 Identities=6% Similarity=-0.020 Sum_probs=116.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006981 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (623)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (623)
++.+.....+.+..++|+++++.+...+ +-+..+|+.--..+...| ++++++++++.+.... +.+..+|+.-...+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3344444455556677888888888765 445667777777777777 4888888888888765 446777777766666
Q ss_pred hc-C-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH--------HHHHHHHHHhhCCCCCCCCHHHHHHHHHH
Q 006981 174 KA-G-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD--------RAFDVLAEMNAEVHPVDPDHITIGALMKA 243 (623)
Q Consensus 174 ~~-g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~~~~~~~~~~ll~~ 243 (623)
+. + +++++++.++++.+.. +-|..+|+.-.-.+.+.|.++ ++++.++++.+.. +.|...|+.....
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d---p~N~SAW~~R~~l 210 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD---GRNNSAWGWRWYL 210 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHH
Confidence 65 6 7788888888887664 346666665444444443333 6666666666532 3455666666555
Q ss_pred HHHcCC-------hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 006981 244 CANAGQ-------VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (623)
Q Consensus 244 ~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 284 (623)
+.+.++ ++++++.+++....+ +.|...|+-+-..+.+.|+
T Consensus 211 L~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 211 RVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 555554 466666666666655 5566666665555554443
No 118
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.49 E-value=9.5e-05 Score=76.48 Aligned_cols=354 Identities=8% Similarity=-0.027 Sum_probs=188.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhH-HHHHHHHHhhhCC------CCCHHHHHHHHHHHHc----C
Q 006981 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-AIKEAFRFFKLVP------NPTLSTFNMLMSVCAS----S 105 (623)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~------~~~~~~~~~li~~~~~----~ 105 (623)
-.|.++.|..+|++....- | +..+....+....+.+ ..+....+|+... ..+...|...+..+.. .
T Consensus 26 P~~~~e~~~~iferal~~~--p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~ 102 (493)
T 2uy1_A 26 MSKDYRSLESLFGRCLKKS--Y-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQ 102 (493)
T ss_dssp HTTCHHHHHHHHHHHSTTC--C-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHH
T ss_pred CCCCHHHHHHHHHHHhccC--C-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhh
Confidence 4589999999999998853 3 4434444444443333 2344555565432 3467888888877543 4
Q ss_pred CChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006981 106 KDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (623)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (623)
++.+.+..+|++.+.. ++. ...|......- +..+...+.++..+.. +.+..|..
T Consensus 103 ~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~~---------------------~~y~~ar~ 158 (493)
T 2uy1_A 103 TRIEKIRNGYMRALQT--PMGSLSELWKDFENFE-LELNKITGKKIVGDTL---------------------PIFQSSFQ 158 (493)
T ss_dssp HHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHHH---------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHH-HHhccccHHHHHHHHh---------------------HHHHHHHH
Confidence 5788899999999873 322 12222222111 1111112222221111 11222222
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcc--C-----CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 006981 184 AYGIMRSKNVKPDRVVFNALITACGQS--G-----AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256 (623)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~~~--g-----~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 256 (623)
+++.+...--..+...|...+.--... | ..+.+..+|+++... .+.+...|...+..+.+.|+++.|..+
T Consensus 159 ~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~---~p~~~~lW~~ya~~~~~~~~~~~ar~i 235 (493)
T 2uy1_A 159 RYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS---FYYAEEVYFFYSEYLIGIGQKEKAKKV 235 (493)
T ss_dssp HHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 222222100001223343333322111 0 023345566665542 223344555555556666666666666
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------CCCC---CHHHHHHHHHHHHhcCCHHHHH
Q 006981 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK---------GVIP---DEVFLSALIDFAGHAGKVEAAF 324 (623)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------~~~p---~~~~~~~li~~~~~~g~~~~a~ 324 (623)
|++.... +.+...|... ......++. ++.+.+. +..+ ....|...+....+.+..+.|.
T Consensus 236 ~erAi~~--P~~~~l~~~y----~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR 306 (493)
T 2uy1_A 236 VERGIEM--SDGMFLSLYY----GLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFR 306 (493)
T ss_dssp HHHHHHH--CCSSHHHHHH----HHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHhC--CCcHHHHHHH----HhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHH
Confidence 6666665 3333333221 111111111 1111110 0011 1245666666666778899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHC
Q 006981 325 EILQEAKNQGISVGIISYSSLMGACSNAK-NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (623)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 403 (623)
.+|... +.. ..+..+|......-...+ +.+.|..+|+...+.- +.+...|...+....+.|+.+.|..+|+++.
T Consensus 307 ~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-- 381 (493)
T 2uy1_A 307 KLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-- 381 (493)
T ss_dssp HHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--
T ss_pred HHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--
Confidence 999988 322 234445543333333333 6899999999887643 2345567777777788899999999999873
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 404 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
.....|...+.--...|+.+.+..+++++.+
T Consensus 382 ---k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 382 ---KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp ---CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2567788888777788999999998988764
No 119
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.47 E-value=5.7e-06 Score=67.41 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (623)
...|..+...+...|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...|+++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4455666666666666666666666666543 3445566666666666666666666666665543 3345556666666
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 006981 172 CAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~ 191 (623)
|.+.|++++|...|+++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666666544
No 120
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.43 E-value=0.00017 Score=69.83 Aligned_cols=174 Identities=6% Similarity=-0.066 Sum_probs=128.8
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-C-CHHH
Q 006981 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS-G-AVDR 215 (623)
Q Consensus 139 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-~~~~ 215 (623)
+.+..++|+++++.++... +-+..+|+.--..+...| .+++++..++.+.... +-+..+|+.-...+.+. + +.++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 3345578999999999875 446778888888888888 5999999999999875 44677888776666665 6 7889
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChH--------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---
Q 006981 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD--------RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD--- 284 (623)
Q Consensus 216 A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--- 284 (623)
++++++.+.... +.|..+|+--.-.+.+.|.++ ++++.++++.+.+ +.|..+|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~d---pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 144 EIEYIHGSLLPD---PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHTSSC---TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHhC---CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 999999998642 456677766555555555555 8888888888877 6677888888877777775
Q ss_pred ----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006981 285 ----WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (623)
Q Consensus 285 ----~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 319 (623)
++++++.+++.....+. |...|+-+-..+.+.|+
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 67888888887776544 66677665555555554
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.43 E-value=9.2e-06 Score=70.24 Aligned_cols=128 Identities=11% Similarity=0.042 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (623)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (623)
..|..+...+...|++++|...++...+.. +.+..++..+...+...|++++|.+.+++..+.. +.+..+|..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345566666777777777777777776654 4456666677777777777777777777766653 33556666666777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHccCCHHHHHHHHHHH
Q 006981 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNA--LITACGQSGAVDRAFDVLAEM 223 (623)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~--li~~~~~~g~~~~A~~~~~~m 223 (623)
.+.|++++|...|++..+.. +.+...+.. +...+...|++++|.+.+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 77777777777777666542 223333322 223355556666666665544
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.42 E-value=2.4e-05 Score=71.01 Aligned_cols=124 Identities=12% Similarity=-0.018 Sum_probs=59.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 006981 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (623)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (623)
+...+...|++++|...|.+.. .|+...+..+...|.+.|++++|...|++..+.+ +.+..+|..+...|...
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 3344444555555555554432 2344445555555555555555555555554443 33444555555555555
Q ss_pred CCHHHHHHHHHHHHhCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 283 GDWEFACSVYDDMTKKGVI--------------P-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (623)
Q Consensus 283 g~~~~A~~l~~~m~~~~~~--------------p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (623)
|++++|...|++..+.... | ....+..+..++.+.|++++|...++...+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 5555555555555443211 0 1134444444555555555555555555443
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.42 E-value=9.2e-07 Score=84.61 Aligned_cols=99 Identities=8% Similarity=-0.087 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (623)
+...+..+...+.+.|++++|+..|+...+.. +.+...|..+..+|.+.|++++|.+.+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44556666677777777777777777777653 3466677777777777777777777777776653 335666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 006981 171 GCAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~ 191 (623)
+|...|++++|...|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777766543
No 124
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.42 E-value=3.3e-05 Score=74.20 Aligned_cols=92 Identities=4% Similarity=-0.025 Sum_probs=38.2
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CC----HHHHHH
Q 006981 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI----TIGALMKACANAGQVDRAREVYKMIHKYNIK-GT----PEVYTI 274 (623)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~ 274 (623)
+..+...|++++|.+++++..... ...|+.. .+..+...+...+++++|...|+++.+.... ++ ..+++.
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 344455555555555555544321 1112211 1122333333444455555555544442111 11 123444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 006981 275 AINCCSQTGDWEFACSVYDDMT 296 (623)
Q Consensus 275 li~~~~~~g~~~~A~~l~~~m~ 296 (623)
+...|...|++++|...|++..
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555554443
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.40 E-value=9.3e-06 Score=66.83 Aligned_cols=98 Identities=10% Similarity=-0.023 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (623)
...+......+.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|++.|++.++.. +.+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 3456666667777777777777777776654 4556677777777777777777777777776653 3456667777777
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 006981 172 CAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~ 191 (623)
|...|++++|++.|++..+.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 77777777777777776654
No 126
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.38 E-value=4.8e-05 Score=73.10 Aligned_cols=61 Identities=7% Similarity=-0.124 Sum_probs=32.0
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 006981 376 TMNALITALCDGDQLPKTMEVLSDMKS----LGLCPN-TITYSILLVACERKDD-VEVGLMLLSQAK 436 (623)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~-~~~a~~~~~~~~ 436 (623)
+|..+...|.+.|++++|++.+++..+ .+..+. ..+|..+..++.+.|+ +++|.+.+++..
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 445555555556666666555555432 111121 4455555566666663 466666665554
No 127
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.38 E-value=3.7e-05 Score=71.94 Aligned_cols=188 Identities=12% Similarity=0.032 Sum_probs=119.3
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHHcCChhHHHHHHHHHHHCCCCCC---------------
Q 006981 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTL-------ITTCAKSGKVDAMFEVFHEMVNAGIEPN--------------- 161 (623)
Q Consensus 104 ~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------- 161 (623)
..++...|.+.|.++.+.. +-....|..+ ...+.+.++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5678888888888888765 4456677766 4555555555555554444333 1221
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-
Q 006981 162 -------VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD- 233 (623)
Q Consensus 162 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~- 233 (623)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|...... . .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~-d~~~ 169 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--P-DKFL 169 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--S-CHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--C-Cccc
Confidence 2234455666777888888888887776643 44335555556777788888888888755431 0 111
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006981 234 -HITIGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (623)
Q Consensus 234 -~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 299 (623)
...+..+..++.+.|++++|+..|++.......| ..........++.+.|+.++|..+|+++....
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2255666777778888888888888776543213 23456666777777788888888888777653
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.36 E-value=1.8e-05 Score=68.27 Aligned_cols=93 Identities=12% Similarity=-0.036 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006981 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (623)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 317 (623)
..+...+...|++++|...|+...+.. +.+..++..+...+...|++++|...+++..+.... +...+..+...+...
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHh
Confidence 334444444455555555554444433 233444444444444555555555555444443211 333444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 006981 318 GKVEAAFEILQEAKN 332 (623)
Q Consensus 318 g~~~~a~~~~~~~~~ 332 (623)
|++++|...+.+..+
T Consensus 95 ~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 95 GKFRAALRDYETVVK 109 (166)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 444444444444443
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.35 E-value=3.9e-06 Score=71.45 Aligned_cols=99 Identities=7% Similarity=-0.036 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (623)
+...+..+...+.+.|++++|+..|+...+.. |.+...|..+..+|...|++++|+..|++..+.. +.+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 44566777777778888888888888887765 5567777778888888888888888888877764 335667777778
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 006981 171 GCAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~ 191 (623)
+|.+.|++++|+..|++..+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888877765
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.35 E-value=2.3e-05 Score=63.71 Aligned_cols=57 Identities=23% Similarity=0.277 Sum_probs=22.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (623)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (623)
.+...+...|++++|...|+++.+.. +.+..++..+...+.+.|++++|...|+++.
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 70 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33333444444444444444433332 2233333344444444444444444444433
No 131
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.34 E-value=0.00023 Score=68.60 Aligned_cols=184 Identities=8% Similarity=0.030 Sum_probs=113.7
Q ss_pred hcCCHH-HHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHH----------HHHHHHHhhhCC---CCCHHHHHHHHHHH
Q 006981 37 RQGRIS-ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA----------IKEAFRFFKLVP---NPTLSTFNMLMSVC 102 (623)
Q Consensus 37 ~~g~~~-~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~---~~~~~~~~~li~~~ 102 (623)
+.|.+. +|+++++.+...+ |.+..+...-..+....+. +++++.+++.+. +.+..+|+.-.-++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 566554 7888888888877 4444433322233322222 567777776653 55777777777666
Q ss_pred HcCC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----
Q 006981 103 ASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA---- 175 (623)
Q Consensus 103 ~~~~--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---- 175 (623)
...+ .+++++.+++.+.+.. +-|..+|+.-.-.+...|. ++++++.++.+++.. +.|..+|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcc
Confidence 6666 3678888888887765 5566677766666667776 477778877777765 44677777666655554
Q ss_pred ----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-----------CCHHHHHHHHHHHhh
Q 006981 176 ----------GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS-----------GAVDRAFDVLAEMNA 225 (623)
Q Consensus 176 ----------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~ 225 (623)
+.++++++.+.+..... +-|...|+-+-..+.+. +.++++++.+.++..
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 34566777776666543 34556665444444333 234555555555554
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.34 E-value=8.6e-05 Score=71.27 Aligned_cols=167 Identities=8% Similarity=-0.037 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC-CCC--
Q 006981 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR------VVFNALITACGQSGAVDRAFDVLAEMNAEVHPV-DPD-- 233 (623)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~-- 233 (623)
..+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|...+.+........ .+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34555667777888888888888777665321 11 123334455667778888888887766421111 111
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-
Q 006981 234 HITIGALMKACANAGQVDRAREVYKMIHKY--NIKGT----PEVYTIAINCCSQTGDWEFACSVYDDMTKK----GVIP- 302 (623)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~p- 302 (623)
..+++.+...|...|++++|...|++..+. ..+.+ ..++..+...|.+.|++++|...+++..+. +...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 346777777788888888888888776521 01111 146677777777777777777777766532 1111
Q ss_pred CHHHHHHHHHHHHhcCCHHHH-HHHHHHH
Q 006981 303 DEVFLSALIDFAGHAGKVEAA-FEILQEA 330 (623)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~a-~~~~~~~ 330 (623)
-..++..+...|.+.|+.++| ...+++.
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 134566666666677777776 5555544
No 133
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.33 E-value=1.2e-05 Score=66.10 Aligned_cols=117 Identities=10% Similarity=0.032 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (623)
...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3445555566666666666666666665543 3345556666666666666666666666655542 2345555556666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 006981 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211 (623)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 211 (623)
+.+.|++++|...|++..+.. +.+...+..+..++.+.|
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 666666666666666655442 223444444444444443
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.33 E-value=9.8e-06 Score=66.96 Aligned_cols=99 Identities=13% Similarity=0.079 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (623)
+...|..+...+...|++++|...++...+.. +.+..++..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 44556666666667777777777777666543 3355666666666666677777777666666543 334556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 006981 171 GCAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~ 191 (623)
.+.+.|++++|...|++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 666666666666666666554
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.31 E-value=4.8e-05 Score=73.04 Aligned_cols=167 Identities=10% Similarity=0.011 Sum_probs=110.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 006981 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE-----VFLSALIDFAGHAGKVEAAFEILQEAKNQGI---SVG--II 340 (623)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~~ 340 (623)
.+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...+.+..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445566677777777777777766654322111 1233344556667788888888887765321 111 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh---C-CCCC--CHHHHHHHHHHHHcCCChhhHHHHHHHHHHC----CCCC-CH
Q 006981 341 SYSSLMGACSNAKNWQKALELYEHMKS---I-KLKP--TVSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCP-NT 409 (623)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~-~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~ 409 (623)
+++.+...|...|++++|...|++..+ . +..+ ...+|..+...|.+.|++++|++.+++..+. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 778888888888888888888887762 1 1111 1257778888899999999999998887642 1111 15
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 006981 410 ITYSILLVACERKDDVEVG-LMLLSQAKE 437 (623)
Q Consensus 410 ~t~~~ll~a~~~~g~~~~a-~~~~~~~~~ 437 (623)
.+|..+..++.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6778888889999999999 777776653
No 136
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.30 E-value=2.5e-05 Score=64.18 Aligned_cols=92 Identities=11% Similarity=-0.014 Sum_probs=38.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006981 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (623)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (623)
.....|.+.|++++|+..|++..+.+ +.+..+|..+..+|.+.|++++|+..|++.++.+.. +...|..+..++...|
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVAMR 95 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHCC
Confidence 33344444444444444444444433 333444444444444444444444444444433221 2333444444444444
Q ss_pred CHHHHHHHHHHHHH
Q 006981 319 KVEAAFEILQEAKN 332 (623)
Q Consensus 319 ~~~~a~~~~~~~~~ 332 (623)
++++|.+.|++..+
T Consensus 96 ~~~~A~~~~~~al~ 109 (126)
T 4gco_A 96 EWSKAQRAYEDALQ 109 (126)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444433
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.28 E-value=1.3e-05 Score=70.48 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=88.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHcCCCh--hh
Q 006981 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA-LCDGDQL--PK 392 (623)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~--~~ 392 (623)
..|++++|...+....+.. +.+...+..+...|...|++++|...|++..+.. +.+...|..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4567777777777776654 3466778888888888888888888888877653 2366777777777 7788888 89
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (623)
Q Consensus 393 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (623)
|...|+++.+.. +-+...+..+...+...|++++|...++++.+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 999998888752 235677778888888999999999999888874
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.28 E-value=2.5e-05 Score=64.47 Aligned_cols=98 Identities=12% Similarity=0.123 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006981 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (623)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~ 313 (623)
...+..+...+.+.|++++|...|++..+.. +.+..++..+...|...|++++|.+.+++..+.... +...+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 4455555556666666666666666655543 334555666666666666666666666665554322 44455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 006981 314 AGHAGKVEAAFEILQEAKNQ 333 (623)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~ 333 (623)
+.+.|++++|...+++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 55556666666555555543
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.28 E-value=3.1e-06 Score=80.89 Aligned_cols=96 Identities=14% Similarity=-0.075 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006981 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (623)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 314 (623)
..+..+...+.+.|++++|...|+...+.. +.+...|..+...|.+.|++++|...+++..+.... +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344445555555555555555555555543 334555555555555555555555555555544322 344455555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 006981 315 GHAGKVEAAFEILQEAKN 332 (623)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~ 332 (623)
...|++++|...+....+
T Consensus 83 ~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555443
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.27 E-value=5.4e-06 Score=74.58 Aligned_cols=97 Identities=19% Similarity=0.077 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC--
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEA----GLK-ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEP-- 160 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-- 160 (623)
..+++.+...+...|++++|...+++..+. +.. ....++..+...+...|++++|.+.+++..+. +-.+
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 344445555555555555555555554431 111 11234444555555555555555555544331 1000
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 161 NVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (623)
Q Consensus 161 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (623)
...++..+...+...|++++|...+++.
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 1223444444555555555555555444
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.27 E-value=7.4e-06 Score=72.00 Aligned_cols=118 Identities=12% Similarity=0.093 Sum_probs=59.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--HHH
Q 006981 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG-CAKAGQV--AKA 181 (623)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~--~~A 181 (623)
.|++++|...++...+.. +.+...+..+...|...|++++|...|++..+.. +.+...+..+... +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 345555555555555443 3344555555555555555555555555555432 2244445555555 4455555 555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 006981 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (623)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (623)
...|++..+.. +.+...+..+...+...|++++|...|.+...
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 55555555442 22344455555555555555555555555554
No 142
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.24 E-value=1.2e-05 Score=72.25 Aligned_cols=24 Identities=8% Similarity=-0.062 Sum_probs=11.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 413 SILLVACERKDDVEVGLMLLSQAK 436 (623)
Q Consensus 413 ~~ll~a~~~~g~~~~a~~~~~~~~ 436 (623)
..+...+...|++++|.+.+++..
T Consensus 151 ~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 151 RGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344444555555555555554444
No 143
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.24 E-value=3.1e-05 Score=72.45 Aligned_cols=188 Identities=11% Similarity=0.025 Sum_probs=119.0
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHhCCCCCCH--------------
Q 006981 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGAL-------IDGCAKAGQVAKAFGAYGIMRSKNVKPDR-------------- 197 (623)
Q Consensus 139 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------------- 197 (623)
..++...|.+.|.+..+.. +-....|+.+ ...+.+.++..+++..+..-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5799999999999999874 3457788877 4555555556666655555443 22221
Q ss_pred --------HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--
Q 006981 198 --------VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-- 267 (623)
Q Consensus 198 --------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-- 267 (623)
.....+...+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+...... .|
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~----~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~ 169 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA----GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFL 169 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT----TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-Cccc
Confidence 12234556677778888888888776542 3444355555667777888888888887443321 11
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006981 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (623)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (623)
....+..+..++.+.|++++|++.|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 023566677777777777777777777764332243 2234445556666777777777777776653
No 144
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.24 E-value=2.9e-05 Score=63.70 Aligned_cols=56 Identities=11% Similarity=0.067 Sum_probs=21.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (623)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (623)
+...+...|++++|...|+...+.. +.+..++..+...+...|++++|.+.+.+..
T Consensus 18 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 73 (131)
T 2vyi_A 18 EGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAI 73 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 3333333444444444444333332 2233333333333344444444444443333
No 145
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.23 E-value=7.3e-06 Score=69.78 Aligned_cols=97 Identities=12% Similarity=-0.052 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006981 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206 (623)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 206 (623)
...+..+...+.+.|++++|...|++..... +.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 3355556666666667777777666666653 3356666666666666666666666666666543 2345556666666
Q ss_pred HHccCCHHHHHHHHHHHhh
Q 006981 207 CGQSGAVDRAFDVLAEMNA 225 (623)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~ 225 (623)
|.+.|++++|...|++...
T Consensus 114 ~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666654
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.22 E-value=6.8e-05 Score=60.07 Aligned_cols=98 Identities=13% Similarity=0.059 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (623)
+..+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3445556666666677777777776666553 3455666666666666677777776666666543 2345566666666
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 006981 172 CAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~ 191 (623)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 66666666666666666654
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.19 E-value=7.1e-06 Score=69.76 Aligned_cols=99 Identities=14% Similarity=0.046 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (623)
+...+..+...+...|++++|+..|+...+.. +.+...|..+..+|...|++++|.+.|++..... +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 34455556666666777777777777666654 4456666666666667777777777777666553 334556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 006981 171 GCAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~ 191 (623)
+|...|++++|...|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666777777777766666543
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.18 E-value=4.2e-05 Score=62.68 Aligned_cols=98 Identities=12% Similarity=0.056 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (623)
...|..+...+.+.|++++|+..|+...+.. +.+...|..+..++.+.|++++|+..|++..+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456666667777777777777777777654 4456677777777777777777777777777653 3356667777777
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 006981 172 CAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~ 191 (623)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 77777777777777766654
No 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.17 E-value=1.1e-05 Score=68.59 Aligned_cols=98 Identities=14% Similarity=0.037 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006981 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (623)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 205 (623)
+...+..+...+.+.|++++|...|+...... +.+...|..+..+|.+.|++++|+..|++..... +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 34456667777778888888888888777654 4467777777777888888888888888777653 335566777777
Q ss_pred HHHccCCHHHHHHHHHHHhh
Q 006981 206 ACGQSGAVDRAFDVLAEMNA 225 (623)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m~~ 225 (623)
++...|++++|.+.|+....
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77788888888887777665
No 150
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.17 E-value=3.4e-05 Score=75.73 Aligned_cols=87 Identities=7% Similarity=-0.141 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHH
Q 006981 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242 (623)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~ 242 (623)
.+|..+..+|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+..
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---P~~~~a~~~l~~ 272 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY---PNNKAAKTQLAV 272 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---CCCHHHHHHHHH
Confidence 444445555555555555555555554432 2234444455555555555555555555544321 223344444445
Q ss_pred HHHHcCChHHH
Q 006981 243 ACANAGQVDRA 253 (623)
Q Consensus 243 ~~~~~g~~~~A 253 (623)
++.+.|+.++|
T Consensus 273 ~~~~~~~~~~a 283 (336)
T 1p5q_A 273 CQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 151
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.16 E-value=2.9e-05 Score=61.72 Aligned_cols=99 Identities=9% Similarity=0.065 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP--NVHTYGAL 168 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~l 168 (623)
+...|..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.|++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 44556666666677777777777777766654 3455666666666667777777777776666653 22 45666666
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhC
Q 006981 169 IDGCAKA-GQVAKAFGAYGIMRSK 191 (623)
Q Consensus 169 i~~~~~~-g~~~~A~~~~~~m~~~ 191 (623)
...+.+. |++++|.+.+++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 6666666 6666676666666654
No 152
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.16 E-value=4.1e-05 Score=75.16 Aligned_cols=132 Identities=11% Similarity=-0.014 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 006981 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD--------------RVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (623)
Q Consensus 161 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (623)
+...+..+...|.+.|++++|+..|++......... ...|..+..++.+.|++++|...+++....
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345566666777777777777777777665421111 356677777777777777777777777653
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 006981 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA-CSVYDDMT 296 (623)
Q Consensus 227 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~l~~~m~ 296 (623)
. +.+...+..+..+|...|++++|...|+++.+.. +.+..++..+...+.+.|+.++| ..++..|.
T Consensus 226 ~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D---SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 3345666777777777777777777777777665 45566777777777777777666 33444443
No 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.10 E-value=1e-05 Score=72.63 Aligned_cols=140 Identities=9% Similarity=-0.070 Sum_probs=78.4
Q ss_pred hHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH----------------HHHHHHH
Q 006981 74 QKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC----------------KLYTTLI 134 (623)
Q Consensus 74 ~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~----------------~~~~~li 134 (623)
.|++++|.+.|+.... .....+..+...+...|++++|+..|++..+.. +.+. .++..+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHH
Confidence 4556666666654331 234456667777888888888888888887643 1121 4555666
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 006981 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214 (623)
Q Consensus 135 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 214 (623)
.+|.+.|++++|+..+++..+.. +.+..++..+..+|...|++++|+..|++..+.. +-+...+..+..++...++.+
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~ 173 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEAR 173 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666543 3345566666666666666666666666665442 223444444444444444443
Q ss_pred HH
Q 006981 215 RA 216 (623)
Q Consensus 215 ~A 216 (623)
++
T Consensus 174 ~~ 175 (198)
T 2fbn_A 174 KK 175 (198)
T ss_dssp C-
T ss_pred HH
Confidence 33
No 154
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.10 E-value=0.0051 Score=59.16 Aligned_cols=188 Identities=4% Similarity=-0.056 Sum_probs=107.9
Q ss_pred cCCChH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 104 SSKDSE-GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK----------VDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (623)
Q Consensus 104 ~~~~~~-~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (623)
+.|.++ +|+.+++.+...+ |-+..+|+.--..+...+. +++++.+++.+.... +.+..+|+.-.-.+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344443 6777777777654 3334445443333333322 456677777766653 34666777666666
Q ss_pred HhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc--
Q 006981 173 AKAG--QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA-VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA-- 247 (623)
Q Consensus 173 ~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~-- 247 (623)
.+.+ .+++++..++++.+.. +-|..+|+.-.-.+...|. .+++++.++.+.... +.|..+|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~---p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---FSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHHSC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHhhh
Confidence 6666 3677777777777654 3456666665555566666 467777777766532 34555565555444443
Q ss_pred ------------CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhC
Q 006981 248 ------------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-----------GDWEFACSVYDDMTKK 298 (623)
Q Consensus 248 ------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~ 298 (623)
+.++++.+.++.....+ |.|..+|+-+-..+.+. +.++++++.++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 33566777777766665 55666666554444443 2345556666665554
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.09 E-value=0.00017 Score=57.71 Aligned_cols=13 Identities=31% Similarity=0.657 Sum_probs=4.7
Q ss_pred HcCChHHHHHHHH
Q 006981 246 NAGQVDRAREVYK 258 (623)
Q Consensus 246 ~~g~~~~A~~~~~ 258 (623)
..|++++|...|+
T Consensus 16 ~~~~~~~A~~~~~ 28 (118)
T 1elw_A 16 SVGNIDDALQCYS 28 (118)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcccHHHHHHHHH
Confidence 3333333333333
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.08 E-value=5.2e-05 Score=62.36 Aligned_cols=104 Identities=13% Similarity=0.071 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCC----HHHHH
Q 006981 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPN----VHTYG 166 (623)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~----~~~~~ 166 (623)
.++..+...+.+.|++++|+..|++..+.. |.+..+|..+..+|.+.|++++|++.|++.++... .++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345566677777777777777777777654 44566777777777777777777777777664310 111 13455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 006981 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199 (623)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 199 (623)
.+...+...|++++|++.|++.... .||...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 118 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPEL 118 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHH
Confidence 6666666777777777777766553 344443
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.08 E-value=4e-05 Score=64.45 Aligned_cols=98 Identities=9% Similarity=-0.010 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (623)
...+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|...|++..... +.+...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 3445555566667777777777777776654 4456666667777777777777777777766653 3345566666667
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 006981 172 CAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~ 191 (623)
|...|++++|...|++..+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777766544
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.07 E-value=9.7e-05 Score=61.35 Aligned_cols=99 Identities=9% Similarity=-0.055 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (623)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (623)
.+...|..+...+...|++++|+..|+...+.. +.+...+..+..++...|++++|...|++..+.. +.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 455566666666666666666666666666554 3445666666666666666666666666666543 33455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 006981 170 DGCAKAGQVAKAFGAYGIMRS 190 (623)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~ 190 (623)
.+|...|++++|...|++...
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 666666666666666666554
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.07 E-value=8.6e-06 Score=73.16 Aligned_cols=123 Identities=11% Similarity=0.001 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC--------------HHHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 006981 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK-PD--------------RVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (623)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 227 (623)
..+..+...+.+.|++++|+..|++....... |+ ...+..+..++.+.|++++|...+.+.....
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34555555666666666666666666543110 00 1444455555555555555555555554421
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006981 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (623)
Q Consensus 228 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 289 (623)
+.+...+..+..+|...|++++|...|++..+.. +.+..++..+...+...++.+++.
T Consensus 119 ---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 ---KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp ---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred ---cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 2234455555555555555555555555555543 334445555555544444444433
No 160
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.06 E-value=2.9e-05 Score=63.68 Aligned_cols=109 Identities=13% Similarity=0.111 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCC----HHHH
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPN----VHTY 165 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~----~~~~ 165 (623)
...|..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3456667777777778888888887777664 44666777777777777788777777777765421 111 5566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006981 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203 (623)
Q Consensus 166 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 203 (623)
..+...|.+.|++++|.+.|++..+. .|+......+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 67777777777777777777777664 3454444433
No 161
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.05 E-value=0.00011 Score=59.99 Aligned_cols=90 Identities=13% Similarity=0.071 Sum_probs=37.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006981 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424 (623)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 424 (623)
+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..++...|+
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~ 87 (126)
T 3upv_A 10 EGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKE 87 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhC
Confidence 3333444444444444444443322 1233444444444444444444444444444321 1123334444444444444
Q ss_pred HHHHHHHHHHHH
Q 006981 425 VEVGLMLLSQAK 436 (623)
Q Consensus 425 ~~~a~~~~~~~~ 436 (623)
+++|...|++..
T Consensus 88 ~~~A~~~~~~al 99 (126)
T 3upv_A 88 YASALETLDAAR 99 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 162
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.05 E-value=5.6e-05 Score=62.14 Aligned_cols=105 Identities=11% Similarity=0.180 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCC--CCCC----HHHHHH
Q 006981 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG--LCPN----TITYSI 414 (623)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~----~~t~~~ 414 (623)
.+..+...+.+.|++++|+..|++..+.. +.+...|+.+..+|.+.|++++|++.+++.++.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45556666777777777777777766543 2356667777777777777777777777765421 1111 235666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006981 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448 (623)
Q Consensus 415 ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~ 448 (623)
+..++...|++++|++.|++.++ ..|+..+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHH
Confidence 66777777888888888877766 345554433
No 163
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.02 E-value=6.8e-05 Score=76.47 Aligned_cols=147 Identities=11% Similarity=-0.030 Sum_probs=76.4
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcC
Q 006981 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASS 105 (623)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 105 (623)
...+.-.+.+++.|++++|++.|.++.+........... ........+..+ .++..+...|...
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~--------------~al~~l~~~y~~~ 68 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAG--ASVDDKRRNEQE--------------TSILELGQLYVTM 68 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSS--SSBCSHHHHHHH--------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHH--HHHHHHHhhhHH--------------HHHHHHHHHHHHC
Confidence 345556788899999999999999998865321111000 000001111112 2345667778888
Q ss_pred CChHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhc
Q 006981 106 KDSEGAFQVLRLVQEAG-LKADCK----LYTTLITTCAKSGKVDAMFEVFHEMVN----AGIEPN-VHTYGALIDGCAKA 175 (623)
Q Consensus 106 ~~~~~A~~~~~~m~~~g-~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~~~-~~~~~~li~~~~~~ 175 (623)
|++++|.+.+..+.+.- ..++.. +.+.+-..+...|+.+.|.+++..... .+..+. ..++..|...|...
T Consensus 69 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 148 (434)
T 4b4t_Q 69 GAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQK 148 (434)
T ss_dssp TCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHc
Confidence 88888888777665421 011111 222222233344566666666655442 111111 23445555555555
Q ss_pred CCHHHHHHHHHHH
Q 006981 176 GQVAKAFGAYGIM 188 (623)
Q Consensus 176 g~~~~A~~~~~~m 188 (623)
|++++|..++++.
T Consensus 149 g~~~~A~~~l~~~ 161 (434)
T 4b4t_Q 149 KQYKDSLALINDL 161 (434)
T ss_dssp TCHHHHHHHHHHH
T ss_pred cChHHHHHHHHHH
Confidence 5555555555544
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.99 E-value=0.00012 Score=63.23 Aligned_cols=99 Identities=10% Similarity=-0.023 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (623)
+...|..+...+.+.|++++|+..|+...+.. +.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45567777888888888888888888888765 4567788888888888888888888888888764 345778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 006981 171 GCAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~ 191 (623)
+|.+.|++++|+..|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888888765
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=0.00025 Score=59.51 Aligned_cols=99 Identities=12% Similarity=-0.003 Sum_probs=74.1
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006981 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165 (623)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 165 (623)
.+...+..+...+...|++++|...|+...+. .|+ ...+..+...|...|++++|...+++..+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 45667777778888888888888888888765 344 5677777777888888888888888777653 3356677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 166 GALIDGCAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 166 ~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (623)
..+..+|...|++++|...|++....
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777788888888888888877765
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.98 E-value=7.4e-05 Score=59.23 Aligned_cols=97 Identities=11% Similarity=0.016 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHH
Q 006981 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP--DRVVFNALI 204 (623)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li 204 (623)
...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...|++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3345555566666666666666666665543 2345556666666666666666666666665542 22 345555566
Q ss_pred HHHHcc-CCHHHHHHHHHHHhh
Q 006981 205 TACGQS-GAVDRAFDVLAEMNA 225 (623)
Q Consensus 205 ~~~~~~-g~~~~A~~~~~~m~~ 225 (623)
..+... |++++|.+.+.....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhh
Confidence 666666 666666666666554
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=0.00033 Score=58.75 Aligned_cols=26 Identities=8% Similarity=0.086 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHH
Q 006981 129 LYTTLITTCAKSGKVDAMFEVFHEMV 154 (623)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~ 154 (623)
.+..+...+...|++++|.+.|++..
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~ 55 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQAL 55 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33333333334444444444444333
No 168
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.94 E-value=9.6e-05 Score=60.11 Aligned_cols=95 Identities=9% Similarity=-0.070 Sum_probs=62.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006981 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (623)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (623)
+..+...+.+.|++++|+..|+...+.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+...|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4445556666777777777777776654 4456666667777777777777777777766653 3355666667777777
Q ss_pred cCCHHHHHHHHHHHHhC
Q 006981 175 AGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 175 ~g~~~~A~~~~~~m~~~ 191 (623)
.|++++|+..|++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777766654
No 169
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.93 E-value=0.00015 Score=60.85 Aligned_cols=92 Identities=16% Similarity=0.136 Sum_probs=42.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006981 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (623)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (623)
.+...+.+.|++++|...|+.+...+ +.+...|..+..+|.+.|++++|+..|++....... +...+..+..++...|
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcC
Confidence 33444444555555555555544443 334444444555555555555555555544443221 2333444444444445
Q ss_pred CHHHHHHHHHHHHH
Q 006981 319 KVEAAFEILQEAKN 332 (623)
Q Consensus 319 ~~~~a~~~~~~~~~ 332 (623)
++++|...|+...+
T Consensus 101 ~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 101 DLDGAESGFYSARA 114 (142)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555444444433
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.93 E-value=0.00027 Score=58.55 Aligned_cols=95 Identities=14% Similarity=-0.075 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006981 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (623)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~ 313 (623)
...+..+...+...|++++|...|+...+.+ +.+...|..+...+...|++++|...+++..+.... +...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHH
Confidence 3344444444444444444444444444433 333444444444444444444444444444443221 33344444444
Q ss_pred HHhcCCHHHHHHHHHHH
Q 006981 314 AGHAGKVEAAFEILQEA 330 (623)
Q Consensus 314 ~~~~g~~~~a~~~~~~~ 330 (623)
+...|++++|...+...
T Consensus 87 ~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 87 QLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 44444444444444443
No 171
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.93 E-value=0.00023 Score=61.38 Aligned_cols=95 Identities=14% Similarity=0.000 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006981 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (623)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 315 (623)
.+..+...+.+.|++++|...|++..+.. +.+...|..+...|.+.|++++|+..|++..+.... +...|..+..++.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 44444445555555555555555555443 334455555555555555555555555555544322 3444555555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 006981 316 HAGKVEAAFEILQEAKN 332 (623)
Q Consensus 316 ~~g~~~~a~~~~~~~~~ 332 (623)
..|++++|...|++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 55555555555555444
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.92 E-value=0.00011 Score=60.06 Aligned_cols=97 Identities=9% Similarity=-0.007 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHHH
Q 006981 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV--KPD----RVVFN 201 (623)
Q Consensus 128 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~~ 201 (623)
..+..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|...|++...... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345556666667777777777777666543 33556666666666677777777776666654321 111 44555
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhh
Q 006981 202 ALITACGQSGAVDRAFDVLAEMNA 225 (623)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~ 225 (623)
.+..++...|++++|.+.|.....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 555566666666666666666554
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.82 E-value=0.00083 Score=68.26 Aligned_cols=166 Identities=10% Similarity=0.011 Sum_probs=93.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHH
Q 006981 272 YTIAINCCSQTGDWEFACSVYDDMTKK-GVIPDEV----FLSALIDFAGHAGKVEAAFEILQEAKNQ----GISV-GIIS 341 (623)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m~~~-~~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~ 341 (623)
+..+...|.+.|++++|.+.+..+... +..++.. ..+.+-..+...|+.+.|..++...... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 455666666666666666666655431 1111111 1111222223346667777666655431 2111 2445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCChhhHHHHHHHHHHC--CCC-C-C--HH
Q 006981 342 YSSLMGACSNAKNWQKALELYEHMKSI----KLKP-TVSTMNALITALCDGDQLPKTMEVLSDMKSL--GLC-P-N--TI 410 (623)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~-p-~--~~ 410 (623)
+..+...|...|++++|..++++.... +-.+ ...+|..++..|...|++++|..++++.... .+. | . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 666777777777777777777765431 1111 1346677777788888888888887776531 111 1 1 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 411 TYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 411 t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
.+..+...+...|++++|...|.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455555666777888888777766643
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.79 E-value=0.00023 Score=57.80 Aligned_cols=85 Identities=11% Similarity=0.004 Sum_probs=33.3
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006981 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323 (623)
Q Consensus 244 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 323 (623)
+.+.|++++|...|+...+.. +.+...|..+...+...|++++|+..|++..+.... +...+..+..++...|++++|
T Consensus 27 ~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~~~~A 104 (121)
T 1hxi_A 27 MLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANAA 104 (121)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 334444444444444444332 233334444444444444444444444444333221 223333333333344444444
Q ss_pred HHHHHHH
Q 006981 324 FEILQEA 330 (623)
Q Consensus 324 ~~~~~~~ 330 (623)
...+++.
T Consensus 105 ~~~~~~a 111 (121)
T 1hxi_A 105 LASLRAW 111 (121)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444333
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.76 E-value=0.00026 Score=73.03 Aligned_cols=120 Identities=12% Similarity=0.052 Sum_probs=84.0
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006981 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (623)
Q Consensus 99 i~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 178 (623)
...+.+.|++++|++.+++..+.. +.+..+|..+..+|.+.|++++|.+.+++..+.. +.+..+|..+..+|.+.|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 334556788888888888887764 4457788888888888888888888888888764 34677788888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHccCCHHHHHHHHH
Q 006981 179 AKAFGAYGIMRSKNVKPDRVVFNALITA--CGQSGAVDRAFDVLA 221 (623)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 221 (623)
++|++.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888877653 2233445445444 677788888888877
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.74 E-value=0.00073 Score=55.17 Aligned_cols=92 Identities=10% Similarity=-0.049 Sum_probs=54.0
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 006981 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADC---KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDG 171 (623)
Q Consensus 98 li~~~~~~~~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~ 171 (623)
+...+...|++++|...|+.+.+.. +.+. ..+..+..++.+.|++++|...|++..+.. +.+ ..++..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 4445556666666666666666543 2222 355556666666666666666666666542 112 4455566666
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 006981 172 CAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~ 191 (623)
+.+.|++++|...|+++...
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666554
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.73 E-value=0.00026 Score=72.97 Aligned_cols=89 Identities=12% Similarity=0.003 Sum_probs=48.5
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 006981 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285 (623)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 285 (623)
.+.+.|++++|.+.+++..+.. +.+..++..+..+|.+.|++++|...+++..+.+ +.+..+|..+...|.+.|++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 3445556666666666555421 2234455555555556666666666665555543 34455555555555555555
Q ss_pred HHHHHHHHHHHhC
Q 006981 286 EFACSVYDDMTKK 298 (623)
Q Consensus 286 ~~A~~l~~~m~~~ 298 (623)
++|.+.|++..+.
T Consensus 91 ~eA~~~~~~al~~ 103 (477)
T 1wao_1 91 RAALRDYETVVKV 103 (477)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555543
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.70 E-value=0.00022 Score=60.77 Aligned_cols=96 Identities=11% Similarity=-0.030 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HH
Q 006981 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLK-AD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPN----VH 163 (623)
Q Consensus 94 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~ 163 (623)
++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|.+.+++..+..- .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555666666667777777766665542100 11 13455566666666666666666665543210 001 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 164 TYGALIDGCAKAGQVAKAFGAYGIMR 189 (623)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (623)
++..+...+...|++++|...+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44455555555556555555555443
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.68 E-value=0.00031 Score=59.77 Aligned_cols=97 Identities=12% Similarity=0.017 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHcCCChhhHHHHHHHHHHC----CCCC-CHH
Q 006981 341 SYSSLMGACSNAKNWQKALELYEHMKSIKL-KPT----VSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCP-NTI 410 (623)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~ 410 (623)
++..+...|...|++++|...+++..+... .++ ...+..+...+...|++++|.+.+++..+. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 445555556666666666666655442100 011 345566667777777777777777776532 1111 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 411 TYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 411 t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
++..+...+...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566677778888888888888887764
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.67 E-value=0.00067 Score=69.58 Aligned_cols=123 Identities=7% Similarity=-0.068 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD--------------CKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 157 (623)
...|..+...+.+.|++++|+..|++..+...... ..+|..+..+|.+.|++++|+..|++.++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34566666667777777777777777665421111 3444455555555555555555555554432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 006981 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216 (623)
Q Consensus 158 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 216 (623)
+.+...|..+..+|...|++++|+..|++..+.. +-+...+..+..++.+.++.+++
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 2234445555555555555555555555554432 12233444444444444444433
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.65 E-value=0.00063 Score=58.41 Aligned_cols=99 Identities=13% Similarity=0.079 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHc-------CC----------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEA-------GL----------KADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------g~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 154 (623)
+..+......+.+.|++++|+..|....+. .- +.+..+|..+..+|.+.|++++|+..++..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345666777788888888888888877764 00 1123456666666667777777777776666
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 155 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (623)
+.. +.+...|..+..+|...|++++|...|++....
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 653 335566666666677777777777777666654
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.64 E-value=0.0017 Score=52.87 Aligned_cols=60 Identities=7% Similarity=-0.116 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGT---PEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (623)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (623)
+..+..++.+.|++++|...|+.+.+.. +.+ ..++..+...+.+.|++++|...|+++..
T Consensus 42 ~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 42 LYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444444444444444444444432 112 33344444444444444444444444444
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.61 E-value=0.00057 Score=67.81 Aligned_cols=137 Identities=9% Similarity=-0.061 Sum_probs=65.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006981 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (623)
Q Consensus 94 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (623)
.|..+...+.+.|++++|+..|++..+.- ++. ......+++.+ .. +.+..+|..+..+|.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~~-------~~-~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGAK-------LQ-PVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHGG-------GH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHHH-------HH-HHHHHHHHHHHHHHH
Confidence 45666667777777777777777666410 000 00000000000 00 113344555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHH
Q 006981 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253 (623)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 253 (623)
+.|++++|+..+++..+.. +.+...|..+..+|...|++++|.+.|++..+.. +.+...+..+...+.+.++.+++
T Consensus 285 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~---P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA---PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555442 2234455555555555555555555555554421 12334444444455555544444
Q ss_pred H
Q 006981 254 R 254 (623)
Q Consensus 254 ~ 254 (623)
.
T Consensus 361 ~ 361 (370)
T 1ihg_A 361 E 361 (370)
T ss_dssp H
T ss_pred H
Confidence 3
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.56 E-value=0.00011 Score=59.27 Aligned_cols=84 Identities=12% Similarity=-0.071 Sum_probs=36.7
Q ss_pred CChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006981 106 KDSEGAFQVLRLVQEAG--LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (623)
Q Consensus 106 ~~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (623)
|++++|+..|++..+.+ -+.+...+..+..+|...|++++|.+.|++..+.. +.+..++..+..++.+.|++++|+.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 44445555555544432 01123344444444555555555555555544432 2234444444444445555555555
Q ss_pred HHHHHHh
Q 006981 184 AYGIMRS 190 (623)
Q Consensus 184 ~~~~m~~ 190 (623)
.|++...
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 185
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.55 E-value=0.0011 Score=67.96 Aligned_cols=85 Identities=9% Similarity=-0.047 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006981 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (623)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (623)
|..+..+|.+.|++++|+..+.+..+.. +.+...+..+..+|.+.|++++|...|++..+.. +.+...+..+...+.+
T Consensus 320 ~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 320 FLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKK 397 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3333444444444444444444444332 2233444444444444444444444444444332 1122334444444444
Q ss_pred CCChhhH
Q 006981 387 GDQLPKT 393 (623)
Q Consensus 387 ~g~~~~A 393 (623)
.++.++|
T Consensus 398 ~~~~~~a 404 (457)
T 1kt0_A 398 AKEHNER 404 (457)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.55 E-value=0.00093 Score=66.27 Aligned_cols=120 Identities=11% Similarity=0.028 Sum_probs=59.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC---------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006981 237 IGALMKACANAGQVDRAREVYKMIHKYN---------------IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (623)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~---------------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 301 (623)
+..+...+.+.|++++|...|++..+.. -+.+..+|..+..+|.+.|++++|++.+++..+....
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 4445555666666666666666555410 0112344555555555555555555555555554322
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006981 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358 (623)
Q Consensus 302 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 358 (623)
+...+..+..+|...|++++|...|++..+.. +.+...+..+...+.+.++.+++
T Consensus 306 -~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 306 -NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555554442 12334444444444444444333
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.55 E-value=0.00022 Score=57.43 Aligned_cols=61 Identities=11% Similarity=0.014 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (623)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (623)
.+..+..+|.+.|++++|...|++..+.+ +.+..++..+..++.+.|++++|+..|++...
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444444444444444444433 33344444444444444444444444444433
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.54 E-value=0.00089 Score=57.44 Aligned_cols=63 Identities=10% Similarity=-0.100 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..++...|++++|...|++.++
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 3445555555555555555555555555431 22344555555555556666666666655554
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.50 E-value=0.0086 Score=62.88 Aligned_cols=172 Identities=6% Similarity=-0.051 Sum_probs=115.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006981 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK----------VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (623)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (623)
...++|++.++.+.+.+ +-+..+|+.--.++.+.|+ ++++++.++.+.+.. +-+..+|+.-.-.+.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34467788888887765 4456667666666666666 788888888887765 44677787777777777
Q ss_pred C--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc-----
Q 006981 176 G--QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG-AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA----- 247 (623)
Q Consensus 176 g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~----- 247 (623)
+ +++++++.++++.+.. +-+..+|+.-...+.+.| ..+++++.++++.+.. +.|..+|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~---p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---FSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT---CCCHHHHHHHHHHHHHHSCCCC
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC---CCCccHHHHHHHHHHhhccccc
Confidence 7 6688888888887764 446777777766677777 7788888877776542 34566666666555553
Q ss_pred ---------CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 006981 248 ---------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (623)
Q Consensus 248 ---------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 284 (623)
+.++++.+.++.....+ +.+..+|+-+-..+.+.++
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 34566666666666655 4556666666665555555
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.44 E-value=0.0005 Score=67.37 Aligned_cols=147 Identities=17% Similarity=0.082 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (623)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (623)
..+..+...+.+.|++++|+..|+...+. .|+... +...++.+++...+ . ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHHH
Confidence 34666667777788888888888887764 233221 11122222222111 0 12566666667
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHH-HHHcCCh
Q 006981 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKA-CANAGQV 250 (623)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~~ll~~-~~~~g~~ 250 (623)
.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...|.+.... .|+ ...+..+... ....+..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l----~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY----APDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHH
Confidence 77777777777777666542 335566666777777777777777777766542 232 2333334333 2234455
Q ss_pred HHHHHHHHHHHhc
Q 006981 251 DRAREVYKMIHKY 263 (623)
Q Consensus 251 ~~A~~~~~~~~~~ 263 (623)
+.+...|..+...
T Consensus 316 ~~a~~~~~~~l~~ 328 (338)
T 2if4_A 316 QKQKEMYKGIFKG 328 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHHhhCC
Confidence 6666666666544
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.36 E-value=0.0054 Score=64.45 Aligned_cols=133 Identities=8% Similarity=0.014 Sum_probs=64.5
Q ss_pred hcC-CHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHH----------HHHHHHHhhhCC---CCCHHHHHHHHHHH
Q 006981 37 RQG-RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA----------IKEAFRFFKLVP---NPTLSTFNMLMSVC 102 (623)
Q Consensus 37 ~~g-~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~---~~~~~~~~~li~~~ 102 (623)
+.| .-++|++.++++.+.+ |........-..+....|+ +++|+.+++.+. +.+..+|+.-.-++
T Consensus 40 ~~~~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 40 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 117 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 444 4467788888888877 4444443333333333333 455555554432 33444555544444
Q ss_pred HcCC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006981 103 ASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (623)
Q Consensus 103 ~~~~--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (623)
.+.+ +++++++.++.+.+.. +-+..+|+.-..++.+.| .++++++.++++++.. +.|..+|+.....+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~ 189 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLP 189 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHH
T ss_pred HHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHH
Confidence 4555 3355555555555443 334444444444444444 4445555555544433 224444444444433
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.36 E-value=0.0025 Score=53.64 Aligned_cols=95 Identities=11% Similarity=-0.042 Sum_probs=52.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCC------CH-----HHHHHHHHHHHHcCChhHHHHHHHHHHHC-----CC
Q 006981 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKA------DC-----KLYTTLITTCAKSGKVDAMFEVFHEMVNA-----GI 158 (623)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~------~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~ 158 (623)
+......+.+.|++++|+..|++..+..... +. ..|..+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 4445555666777777777777776643210 12 25566666666666666666666665543 00
Q ss_pred CC-CHHHH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 159 EP-NVHTY----GALIDGCAKAGQVAKAFGAYGIMR 189 (623)
Q Consensus 159 ~~-~~~~~----~~li~~~~~~g~~~~A~~~~~~m~ 189 (623)
.| +...| .....++...|++++|+..|++..
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 12 23344 555555555555555555555554
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.00023 Score=56.39 Aligned_cols=92 Identities=9% Similarity=-0.055 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-------HH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-------VH 163 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-------~~ 163 (623)
+...|..+...+...|++++|+..|+...+.. +.+...+..+..++.+.|++++|.+.|++..+. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 34456666667777777777777777776654 445666777777777777777777777777655 233 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q 006981 164 TYGALIDGCAKAGQVAKAFGAY 185 (623)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~ 185 (623)
.+..+..++...|+.+.|...|
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHH
Confidence 4444555555555544444333
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.33 E-value=0.0068 Score=50.26 Aligned_cols=16 Identities=19% Similarity=0.092 Sum_probs=6.6
Q ss_pred cCCHHHHHHHHHHHHh
Q 006981 175 AGQVAKAFGAYGIMRS 190 (623)
Q Consensus 175 ~g~~~~A~~~~~~m~~ 190 (623)
.+++++|+..|++..+
T Consensus 74 ~~d~~~A~~~~~~Aa~ 89 (138)
T 1klx_A 74 KKDLRKAAQYYSKACG 89 (138)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHc
Confidence 3344444444444433
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.31 E-value=0.0028 Score=52.62 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=6.6
Q ss_pred cCCHHHHHHHHHHHHh
Q 006981 352 AKNWQKALELYEHMKS 367 (623)
Q Consensus 352 ~g~~~~A~~~~~~m~~ 367 (623)
.+++++|.+.|++..+
T Consensus 74 ~~d~~~A~~~~~~Aa~ 89 (138)
T 1klx_A 74 KKDLRKAAQYYSKACG 89 (138)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHc
Confidence 3344444444444433
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.28 E-value=0.0042 Score=52.31 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc-------CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 236 TIGALMKACANAGQVDRAREVYKMIHKY-------NIKGTPEVY----TIAINCCSQTGDWEFACSVYDDMTK 297 (623)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~ 297 (623)
.|+.+..++.+.|++++|+..+++..+. + +.+...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666666677777777777777666664 3 3344566 6677777777777777777776654
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.27 E-value=0.00088 Score=65.60 Aligned_cols=149 Identities=13% Similarity=0.043 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006981 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (623)
Q Consensus 128 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 207 (623)
..+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ...|..+..++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 34666777788889999999999887764 344321 223334444433221 13788889999
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCHH
Q 006981 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC-CSQTGDWE 286 (623)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~ 286 (623)
.+.|++++|...+.+..... +.+...+..+..+|...|++++|...|+++.+.. +.+..++..+... ....+..+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE---EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988642 3467789999999999999999999999998765 4455666666655 34456778
Q ss_pred HHHHHHHHHHhCC
Q 006981 287 FACSVYDDMTKKG 299 (623)
Q Consensus 287 ~A~~l~~~m~~~~ 299 (623)
.+..+|..|....
T Consensus 317 ~a~~~~~~~l~~~ 329 (338)
T 2if4_A 317 KQKEMYKGIFKGK 329 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHhhCCC
Confidence 8889999887653
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.24 E-value=0.0033 Score=47.29 Aligned_cols=78 Identities=14% Similarity=0.152 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (623)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (623)
..|..+...+...|++++|+..++...+.. +.+..++..+...+.+.|++++|.+.|++..+.. +.+...+..+...+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 344445555555555555555555555443 3344455555555555555555555555555432 22334444444433
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.11 E-value=0.0032 Score=50.14 Aligned_cols=77 Identities=18% Similarity=0.078 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (623)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (623)
|+..++...+.. +.+...+..+...|...|++++|...|++..+.. +.+...|..+..+|.+.|++++|...|++..
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444432 3345555555555555555555555555555442 2234455555555555555555555555554
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.09 E-value=0.0027 Score=65.16 Aligned_cols=88 Identities=9% Similarity=-0.033 Sum_probs=39.2
Q ss_pred HhcCCHHHHHHHHHHHHhC---CC---CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhC----CCCCCCC-HHHHHHH
Q 006981 173 AKAGQVAKAFGAYGIMRSK---NV---KP-DRVVFNALITACGQSGAVDRAFDVLAEMNAE----VHPVDPD-HITIGAL 240 (623)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~---g~---~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~-~~~~~~l 240 (623)
...|++++|+.++++..+. -+ .| ...+++.|...|...|++++|..++.+.... -..-.|+ ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3456666666655554321 01 11 1234555555555555555555555443320 0001122 2334445
Q ss_pred HHHHHHcCChHHHHHHHHHH
Q 006981 241 MKACANAGQVDRAREVYKMI 260 (623)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~ 260 (623)
...|...|++++|+.++++.
T Consensus 400 a~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 55555555555555554443
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.06 E-value=0.0023 Score=65.56 Aligned_cols=86 Identities=14% Similarity=0.071 Sum_probs=39.2
Q ss_pred HHcCChHHHHHHHHHHHhcC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCC-HHHHHHH
Q 006981 245 ANAGQVDRAREVYKMIHKYN---IKG----TPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGV-IPD-EVFLSAL 310 (623)
Q Consensus 245 ~~~g~~~~A~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~-~p~-~~~~~~l 310 (623)
...|++++|+.++++..+.. +.+ ...+++.|...|...|++++|+.++++.+. .|. .|+ ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34555555555555443320 001 123455555555555555555555554432 111 111 1334444
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 006981 311 IDFAGHAGKVEAAFEILQEA 330 (623)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~ 330 (623)
...|...|++++|..++++.
T Consensus 400 a~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 44555555555555554443
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.04 E-value=0.0077 Score=45.15 Aligned_cols=62 Identities=21% Similarity=0.222 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
.+..+...+.+.|++++|...|++..+.. +.+..++..+...+.+.|++++|...|++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444555555555555555544433 333444455555555555555555555554443
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.97 E-value=0.0061 Score=48.46 Aligned_cols=62 Identities=15% Similarity=0.043 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (623)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (623)
...+..+...|...|++++|...|++..+.+ +.+...|..+...|...|++++|...|++..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444444444444444433 2334444444444444444444444444443
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.0034 Score=49.30 Aligned_cols=62 Identities=11% Similarity=0.081 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
.+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|++.+++..+.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 44445555555555555555555555543 334555555555555555555555555555544
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.88 E-value=0.0029 Score=53.15 Aligned_cols=47 Identities=9% Similarity=0.029 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-----------ChhHHHHHHHHHHHC
Q 006981 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-----------KVDAMFEVFHEMVNA 156 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~ 156 (623)
++|+..|++..+.. +.+..+|..+..+|.+.| ++++|++.|++..+.
T Consensus 63 ~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 63 QEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 35555555555543 334445555555555443 455555555555443
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.86 E-value=0.0033 Score=52.84 Aligned_cols=96 Identities=9% Similarity=-0.005 Sum_probs=62.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006981 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK----------VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (623)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (623)
.+++|.+.++...+.. +.+...|+.+..++...++ +++|+..|++.++.. +.+..+|..+..+|...|
T Consensus 17 ~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhc
Confidence 4455555555555543 3445555555555555444 568999999988874 346778888888888764
Q ss_pred -----------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006981 177 -----------QVAKAFGAYGIMRSKNVKPDRVVFNALITA 206 (623)
Q Consensus 177 -----------~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 206 (623)
++++|++.|++..+. .|+...|...+..
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 788888888888775 5666655544443
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.68 E-value=0.0094 Score=46.04 Aligned_cols=63 Identities=11% Similarity=0.097 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 154 (623)
+...|..+...+...|++++|+..|+...+.. +.+...|..+..+|...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555555555555555555443 2234445555555555555555555555444
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.64 E-value=0.078 Score=51.26 Aligned_cols=74 Identities=15% Similarity=0.125 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006981 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201 (623)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 201 (623)
+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 5677788887777777889999999998888874 77777777788888889999999988888776 55666654
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.60 E-value=0.012 Score=45.38 Aligned_cols=62 Identities=13% Similarity=0.047 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (623)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (623)
...+..+...|.+.|++++|...|+++.+.+ +.+..+|..+..+|.+.|++++|.+.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555556666666666666555544 3344555555666666666666666555544
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.21 E-value=0.056 Score=59.71 Aligned_cols=96 Identities=14% Similarity=0.119 Sum_probs=53.5
Q ss_pred hHHHHHHHH-HhhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 006981 74 QKAIKEAFR-FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152 (623)
Q Consensus 74 ~~~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 152 (623)
.+++++|.+ ++..++. ......+++.+.+.|..+.|+++.+.-. .-...+...|++++|.++.+.
T Consensus 612 ~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~ 677 (814)
T 3mkq_A 612 RGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTD 677 (814)
T ss_dssp TTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTT
T ss_pred hCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHh
Confidence 345555555 4433331 1122555556666666666665542111 112334566777777766543
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (623)
Q Consensus 153 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (623)
+ .+...|..|...+.+.++++.|.+.|.++.
T Consensus 678 ~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 678 E------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp C------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred h------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 2 356677777777777777777777777654
No 211
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.93 E-value=0.27 Score=54.10 Aligned_cols=155 Identities=14% Similarity=0.062 Sum_probs=98.3
Q ss_pred HHHHcCCChHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006981 100 SVCASSKDSEGAFQ-VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (623)
Q Consensus 100 ~~~~~~~~~~~A~~-~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 178 (623)
......+++++|.+ ++.. ++ +......++..+.+.|..++|.++.+.-. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 33445778888876 4421 11 12233677788888888888887653211 112345678899
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 006981 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258 (623)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 258 (623)
+.|+++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. +..+...|...|+.+...++-+
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----------~~~l~~l~~~~~~~~~~~~~~~ 731 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----------LESLFLLHSSFNNKEGLVTLAK 731 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----------hhhhHHHHHHcCCHHHHHHHHH
Confidence 9888876543 3678888899999999999999999887642 3445555666777776666655
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295 (623)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 295 (623)
.....| -++.....|.+.|++++|++++.++
T Consensus 732 ~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 732 DAETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 555544 2334444555666666666665543
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.86 E-value=0.13 Score=49.65 Aligned_cols=135 Identities=7% Similarity=-0.056 Sum_probs=64.4
Q ss_pred CCCCHHHHHHHHHHHHc--CC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cC-Ch-hHH---HHHHHHHH
Q 006981 88 PNPTLSTFNMLMSVCAS--SK---DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK---SG-KV-DAM---FEVFHEMV 154 (623)
Q Consensus 88 ~~~~~~~~~~li~~~~~--~~---~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~---~g-~~-~~A---~~~~~~m~ 154 (623)
++.+...|...+++... .+ +..+|..+|++..+.. |-....|..+.-+|.- .+ .. ... ...+....
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 44566777777765332 22 3467788888877763 2234445444444331 00 00 000 01111111
Q ss_pred H-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 006981 155 N-AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (623)
Q Consensus 155 ~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (623)
. ...+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|+.++|.+.|.+...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0 0113344555555444444556666666555555543 4544444445555555555555555555543
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.67 E-value=0.16 Score=42.15 Aligned_cols=96 Identities=16% Similarity=0.075 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---ChhhHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 006981 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGD---QLPKTMEVLSDMKSLGLCP--NTITYSILLVACERKDDVEVG 428 (623)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a 428 (623)
.+..+.+-|.+..+.+. ++..+...+..++++.+ +.++++.+|++..+.. .| +...+-.+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34566667776666553 68888888888888888 5668999999988764 35 244455566678999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 429 LMLLSQAKEDGVIPNLVMFKCIIGM 453 (623)
Q Consensus 429 ~~~~~~~~~~g~~p~~~~~~~li~~ 453 (623)
++.++.+++ ++|+..-...|...
T Consensus 91 ~~y~~~lL~--ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQNNQAKELERL 113 (152)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHh--cCCCCHHHHHHHHH
Confidence 999999988 67876665555544
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.60 E-value=0.032 Score=42.59 Aligned_cols=53 Identities=15% Similarity=0.180 Sum_probs=23.3
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006981 102 CASSKDSEGAFQVLRLVQEAGLKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVN 155 (623)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 155 (623)
+.+.|++++|+..++...+.. +.+.. .+..+..+|...|++++|.+.|++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334444444444444444432 22333 444444444444444444444444443
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.45 E-value=0.082 Score=53.11 Aligned_cols=61 Identities=8% Similarity=-0.089 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006981 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSK-----N-VKPD-RVVFNALITACGQSGAVDRAFDVLAEM 223 (623)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (623)
.+++.|...|...|++++|..++++.... | -.|+ ..+++.|...|...|++++|..++++.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34555555555555555555555544321 1 1122 234555555555555555555555544
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.43 E-value=0.13 Score=51.59 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHH
Q 006981 236 TIGALMKACANAGQVDRAREVYKMI 260 (623)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~ 260 (623)
+++.|..+|...|++++|+.+++++
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~ 355 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRT 355 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3444444455555555555544443
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.40 E-value=0.035 Score=55.82 Aligned_cols=25 Identities=24% Similarity=0.543 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 341 SYSSLMGACSNAKNWQKALELYEHM 365 (623)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m 365 (623)
+++.|..+|...|++++|..++++.
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~a 366 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKI 366 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 4444455555555555555544443
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.39 E-value=0.1 Score=39.60 Aligned_cols=56 Identities=20% Similarity=0.322 Sum_probs=30.4
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 242 KACANAGQVDRAREVYKMIHKYNIKGTPE-VYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
..+.+.|++++|...|+.+.+.. +.+.. .|..+...|...|++++|.+.|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34445555555555555555543 33444 5555555555555555555555555544
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.33 E-value=0.074 Score=53.51 Aligned_cols=62 Identities=8% Similarity=-0.063 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHH-----CC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 375 STMNALITALCDGDQLPKTMEVLSDMKS-----LG-LCPN-TITYSILLVACERKDDVEVGLMLLSQAK 436 (623)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g-~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (623)
.+++.+...|...|++++|+.++++.+. .| -.|+ ..+++.|...|...|++++|..++++..
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3455555555555555555555555432 11 1121 3345555566666666666666666554
No 220
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.24 E-value=1.2 Score=37.79 Aligned_cols=98 Identities=11% Similarity=0.133 Sum_probs=48.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHH
Q 006981 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (623)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 252 (623)
.+.|+++.|.++.+++. +...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+.
T Consensus 16 L~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS-----------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----------HHHHHHHHHHHTCHHH
T ss_pred HhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----------HHHHHHHHHHhCCHHH
Confidence 34555555555554441 345555555555555555555555554321 2333333444555554
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006981 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (623)
Q Consensus 253 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 293 (623)
-.++-+.....| -++.....+...|+++++.++|.
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 444444444333 23334444445556665555553
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.20 E-value=1.6 Score=40.53 Aligned_cols=92 Identities=16% Similarity=0.159 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhhCCCCCCCC---HHHHHHHHHHHHHc-----CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-C
Q 006981 213 VDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANA-----GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-G 283 (623)
Q Consensus 213 ~~~A~~~~~~m~~~~~~~~~~---~~~~~~ll~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g 283 (623)
...|...+++..+ +.|+ -..|..+...|.+. |+.++|.+.|++..+.+...+..++......++.. |
T Consensus 179 l~~A~a~lerAle----LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACD----LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHH----HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHH----hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 4567777777765 3565 55778888888884 89999999999988876333477888888888884 8
Q ss_pred CHHHHHHHHHHHHhCCCC--CCHHHHH
Q 006981 284 DWEFACSVYDDMTKKGVI--PDEVFLS 308 (623)
Q Consensus 284 ~~~~A~~l~~~m~~~~~~--p~~~~~~ 308 (623)
+.+++.+.+++.+..... |+....+
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 899999999988887665 6644443
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.11 E-value=0.16 Score=38.42 Aligned_cols=65 Identities=9% Similarity=0.033 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 126 DCKLYTTLITTCAKSGK---VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 126 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (623)
|+..+..+..++...++ .++|..++++..+.. +-+..+...+...+.+.|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444444444433322 345555555554442 223444444445555555555555555555443
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.88 E-value=0.23 Score=37.41 Aligned_cols=66 Identities=5% Similarity=-0.007 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 006981 90 PTLSTFNMLMSVCASSKD---SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (623)
Q Consensus 90 ~~~~~~~~li~~~~~~~~---~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (623)
.|...+..+..++...++ .++|..++++..+.. +-++.....+...+.+.|++++|+..|+.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445555555555543333 466666666666654 444555666666666666666666666666654
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.32 E-value=0.27 Score=40.75 Aligned_cols=86 Identities=13% Similarity=0.059 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCChhhHH
Q 006981 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAK---NWQKALELYEHMKSIKLKP--TVSTMNALITALCDGDQLPKTM 394 (623)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~ 394 (623)
+..+.+-|.+..+.+. ++..+...+..++++.+ +.+++..+|+...+.. .| +...+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3455555665555553 67777777777788777 5668888888777653 13 2445555666778888888888
Q ss_pred HHHHHHHHCCCCCCH
Q 006981 395 EVLSDMKSLGLCPNT 409 (623)
Q Consensus 395 ~l~~~m~~~g~~p~~ 409 (623)
+.++.+++ +.|+.
T Consensus 92 ~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHHH--HCTTC
T ss_pred HHHHHHHh--cCCCC
Confidence 88888877 36743
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.17 E-value=3.5 Score=38.17 Aligned_cols=96 Identities=14% Similarity=0.002 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHH
Q 006981 250 VDRAREVYKMIHKYNIKG-TPEVYTIAINCCSQT-----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA-GKVEA 322 (623)
Q Consensus 250 ~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~ 322 (623)
...|...+++..+.+..- +...|+.+...|.+. |+.++|.+.|++.++.+..-+..++....+.+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 456777777777764110 356788888888884 88888888888888764322356666677777774 88888
Q ss_pred HHHHHHHHHHCCCC--CCHHHHHHH
Q 006981 323 AFEILQEAKNQGIS--VGIISYSSL 345 (623)
Q Consensus 323 a~~~~~~~~~~~~~--~~~~~~~~l 345 (623)
+.+.+++....... |+....+.+
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHHHH
Confidence 88888888887655 554444433
No 226
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.84 E-value=2.1 Score=34.30 Aligned_cols=137 Identities=14% Similarity=0.047 Sum_probs=81.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006981 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361 (623)
Q Consensus 282 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 361 (623)
.|..++..++..+..... +..-++.+|--....-+-+-..++++.+-+. .| ...+|++......
T Consensus 20 dG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHHHH
Confidence 455566666666555432 3344555554444444444444444433221 12 1345666655555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006981 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440 (623)
Q Consensus 362 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~ 440 (623)
+-.+- .+....+..+..+...|+-++-.+++.++... -+|+......+..||.+.|+..++.+++.++-+.|+
T Consensus 84 ~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 55442 45556666777777788887777777775442 467777777778888888888888888887777774
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.79 E-value=2.8 Score=35.61 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 006981 163 HTYGALIDGCAKAGQVAKAFGAYG 186 (623)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~ 186 (623)
..|..|.....+.|+++-|.+.|.
T Consensus 35 ~~Wk~Lg~~AL~~gn~~lAe~cy~ 58 (177)
T 3mkq_B 35 ITWERLIQEALAQGNASLAEMIYQ 58 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHH
Confidence 334444444444444444444443
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.94 E-value=3 Score=33.43 Aligned_cols=61 Identities=18% Similarity=0.163 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006981 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (623)
Q Consensus 273 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (623)
...++.+...|+-+.-.+++.++.. +..|+......+..+|.+.|+..+|.+++.+.-+.|
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3344444444555544444444322 123344444444555555555555555555544444
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.93 E-value=1.1 Score=34.26 Aligned_cols=63 Identities=11% Similarity=-0.044 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 236 TIGALMKACANAGQVDRAREVYKMIHKYN------IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
.+..|...+.+.++++.|...|+...+.. -.+...++..+..+|.+.|+++.|...+++..+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44455555666666666666665554421 1223455666666666666666666666666553
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.70 E-value=1.1 Score=34.43 Aligned_cols=62 Identities=10% Similarity=-0.001 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 006981 95 FNMLMSVCASSKDSEGAFQVLRLVQEAG------LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (623)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (623)
+..+...+.+.+++..|...++...+.- -.+....+..|..++.+.|+++.|...+++..+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 4445555566666666666665554421 0123445555555555666666666655555543
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.64 E-value=2.3 Score=33.73 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=10.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 006981 417 VACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 417 ~a~~~~g~~~~a~~~~~~~~~ 437 (623)
-++.+.|++++|++.++.+++
T Consensus 82 vg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 82 VGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHH
Confidence 344555555555555555554
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.62 E-value=1.3 Score=36.17 Aligned_cols=64 Identities=11% Similarity=0.014 Sum_probs=47.5
Q ss_pred cCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006981 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450 (623)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 450 (623)
..++.++|.++|+.+++.+-+- ...|.....--.++|++..|++++.+.+..+..|....-.++
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 3478999999999987643222 666766666678899999999999999988776655444444
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.51 E-value=1.6 Score=35.67 Aligned_cols=106 Identities=10% Similarity=-0.013 Sum_probs=68.8
Q ss_pred CCCCHHHHHHHHHHHHcCCCh------HHHHHHHHHHHHcCCCCCHH----HHHHHHH---HHHHcCChhHHHHHHHHHH
Q 006981 88 PNPTLSTFNMLMSVCASSKDS------EGAFQVLRLVQEAGLKADCK----LYTTLIT---TCAKSGKVDAMFEVFHEMV 154 (623)
Q Consensus 88 ~~~~~~~~~~li~~~~~~~~~------~~A~~~~~~m~~~g~~~~~~----~~~~li~---~~~~~g~~~~A~~~~~~m~ 154 (623)
.+.|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|-.|-- .+...+++++|.++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 356777888888887777888 7777888877764 455421 1111111 1123477888888888886
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006981 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195 (623)
Q Consensus 155 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 195 (623)
+.. +.=...|......-.+.|+...|.+++...+..+.+|
T Consensus 88 ~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 88 ANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 642 2236667777777777888888888888887766443
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.32 E-value=1.4 Score=35.07 Aligned_cols=96 Identities=9% Similarity=0.013 Sum_probs=67.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHH
Q 006981 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK---ALELYEHMKSIKLKP--TVSTMNALITAL 384 (623)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~--~~~~~~~li~~~ 384 (623)
++........+..+.+-+......|. ++..+-..+..++.+..+... ++.+++.+.+.+ .| .....-.|.-++
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHH
Confidence 34444444556666777776666553 777888888888888887665 888888887653 12 233444566788
Q ss_pred HcCCChhhHHHHHHHHHHCCCCCCH
Q 006981 385 CDGDQLPKTMEVLSDMKSLGLCPNT 409 (623)
Q Consensus 385 ~~~g~~~~A~~l~~~m~~~g~~p~~ 409 (623)
.+.|++++|.+.++.+++. .|+.
T Consensus 85 yklg~Y~~A~~~~~~lL~~--eP~n 107 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQT--EPQN 107 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHhhhHHHHHHHHHHHHHh--CCCC
Confidence 9999999999999998884 6743
No 235
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.94 E-value=6.7 Score=39.33 Aligned_cols=65 Identities=17% Similarity=0.239 Sum_probs=30.0
Q ss_pred CCccCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCchHHHHHHHHHHhhhHHHHHHHHHh
Q 006981 19 ANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERK----GLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84 (623)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 84 (623)
.+|...+.........|.+ |++++|++.+-.+.+. +-.+++......+...|...++++...+.+
T Consensus 11 ~D~s~~~~~~~~~~~~l~~-~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i 79 (445)
T 4b4t_P 11 KDYSQILKEEFPKIDSLAQ-NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQL 79 (445)
T ss_dssp -----------------CH-HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3444445555555555544 7788888887766643 112455555566667777777666654444
No 236
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.27 E-value=12 Score=42.91 Aligned_cols=87 Identities=9% Similarity=0.074 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006981 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203 (623)
Q Consensus 128 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 203 (623)
.-|..++..+-+.+.++.+.++-...++..-+.+. ..|..+.+.+...|++++|...+-.+..... -......|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 34566666666666666666665555443211111 2466667777777777777777766665432 34556666
Q ss_pred HHHHHccCCHHHH
Q 006981 204 ITACGQSGAVDRA 216 (623)
Q Consensus 204 i~~~~~~g~~~~A 216 (623)
+...+..|..+.-
T Consensus 978 V~~lce~~~~~~L 990 (1139)
T 4fhn_B 978 VNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHCCHHHH
T ss_pred HHHHHhCCChhhh
Confidence 6666666665543
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.74 E-value=24 Score=35.26 Aligned_cols=95 Identities=17% Similarity=0.169 Sum_probs=49.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCCC----HHH
Q 006981 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANAGQVDRAREVYKMIHKY--NIKGT----PEV 271 (623)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~ 271 (623)
..|...+...|++.+|.+++..+..+..+.... ...+..-++.|...+++..|..++.++... ...++ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 345566666677777777766665432222111 223444556666666766666666655321 11111 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 272 YTIAINCCSQTGDWEFACSVYDDM 295 (623)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m 295 (623)
+..++..+...+++.+|.+.|.+.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 445555555566666665555544
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=86.62 E-value=42 Score=36.87 Aligned_cols=310 Identities=9% Similarity=0.022 Sum_probs=173.0
Q ss_pred HHHHHHHHcCCChHHH-HHH-HHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHH
Q 006981 96 NMLMSVCASSKDSEGA-FQV-LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG--IEPNVHTYGALIDG 171 (623)
Q Consensus 96 ~~li~~~~~~~~~~~A-~~~-~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~ 171 (623)
.++.+++...|-.... +.. ..++-+. .+....-.+.--+....|+.++++.+++.....+ -.+....-..+.-+
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLG 420 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA--QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLG 420 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC--CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc--chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHH
Confidence 3566788888754333 222 2344442 2223333334445678899999988888766421 12233444455556
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC-------CCCHHHHHHHHHHHH--ccCCHHHHHHHHHHHhhCCCCCCCCHHHHH--HH
Q 006981 172 CAKAGQVAKAFGAYGIMRSKNV-------KPDRVVFNALITACG--QSGAVDRAFDVLAEMNAEVHPVDPDHITIG--AL 240 (623)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~-------~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~--~l 240 (623)
...+|..+++..++.......- .+....-.++.-+.+ -.++ +++.+.+..+.... .+...... +|
T Consensus 421 li~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd---~~~~~~~AalAL 496 (963)
T 4ady_A 421 LIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYND---SATSGEAAALGM 496 (963)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTC---CHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcC---CHHHHHHHHHHH
Confidence 6667776678887776654310 011122222323333 3344 45556666655421 11111122 33
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHH
Q 006981 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC--CSQTGDWEFACSVYDDMTKKGVIPDEVFLS---ALIDFAG 315 (623)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~---~li~~~~ 315 (623)
...+.-.|+.+....++..+.+.. +..+...+.-+ +...|+.+.+..+.+.+.... .|. .-|. ++.-+|+
T Consensus 497 Gli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~-vRygaa~alglAya 571 (963)
T 4ady_A 497 GLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESL-LRYGGAFTIALAYA 571 (963)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTT
T ss_pred hhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhc
Confidence 334556678888888888776542 23343334444 446788888888888887642 222 2232 3334677
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh-hhHH
Q 006981 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL-PKTM 394 (623)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~ 394 (623)
..|+.....+++..+.... ..++.-...+.-++...|+.+.+.++++.+.+.+ .|.+..-.++.-+....|.. .+|+
T Consensus 572 GTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~ai 649 (963)
T 4ady_A 572 GTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAI 649 (963)
T ss_dssp TSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHH
T ss_pred CCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHH
Confidence 7889877777888887653 2233333333334445677777788887776654 45555555566666666665 5788
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006981 395 EVLSDMKSLGLCPNTITYSILLVACER 421 (623)
Q Consensus 395 ~l~~~m~~~g~~p~~~t~~~ll~a~~~ 421 (623)
+++..+.. .+|..+-...+.++..
T Consensus 650 d~L~~L~~---D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 650 DVLDPLTK---DPVDFVRQAAMIALSM 673 (963)
T ss_dssp HHHHHHHT---CSSHHHHHHHHHHHHH
T ss_pred HHHHHHcc---CCCHHHHHHHHHHHHH
Confidence 99999875 4565554444444443
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=86.50 E-value=42 Score=36.82 Aligned_cols=308 Identities=10% Similarity=-0.024 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHcCChhHH-HHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHH
Q 006981 129 LYTTLITTCAKSGKVDAM-FEVF-HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV--FNALI 204 (623)
Q Consensus 129 ~~~~li~~~~~~g~~~~A-~~~~-~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~li 204 (623)
+-.++.+++..+|--... +... +.+.+. .+....-.+.--+....|+.++++.+++.....+-..+..+ -..+.
T Consensus 341 ~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAlla 418 (963)
T 4ady_A 341 TAVSVANGFMHAGTTDNSFIKANLPWLGKA--QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYG 418 (963)
T ss_dssp HHHHHHHHHHTTTTCCCHHHHHCHHHHHHC--CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchhhhcchhhhhcc--chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHH
Confidence 445667788877744332 2222 233332 22222222333456778999999988887765221223333 33334
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCC-----CCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCCCH--HHHHHHH
Q 006981 205 TACGQSGAVDRAFDVLAEMNAEVHPVD-----PDHITIGALMKACANAGQ-VDRAREVYKMIHKYNIKGTP--EVYTIAI 276 (623)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~~~ll~~~~~~g~-~~~A~~~~~~~~~~~~~~~~--~~~~~li 276 (623)
-+....|..+++..++........... +....-.++.-+.+-.|. -+++...+..+...+- +.. ..--+|.
T Consensus 419 LGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALG 497 (963)
T 4ady_A 419 LGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMG 497 (963)
T ss_dssp HHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHh
Confidence 455566666678887776654311010 112222333333333443 2455555555554321 111 1112333
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhc
Q 006981 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG--HAGKVEAAFEILQEAKNQGISVGIISY--SSLMGACSNA 352 (623)
Q Consensus 277 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~ 352 (623)
..+.-.|+.+....++..+.+.. +......+..+++ ..|+.+.+..+.+.+.... .|....- .++.-+|+..
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTS
T ss_pred hhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCC
Confidence 44556788888888888776642 3344444444444 6789898888888887642 2222222 2345567888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHH
Q 006981 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV-EVGLML 431 (623)
Q Consensus 353 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~ 431 (623)
|+.....+++..+.+.. ..++.....+.-++...|+.+.+.++++.+.+.+ .|...--..+.-+....|.. .++..+
T Consensus 574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 99887777999887642 2233333334445556788888888887776643 44444333333344444443 567778
Q ss_pred HHHHHHCCCCCCHHHHH
Q 006981 432 LSQAKEDGVIPNLVMFK 448 (623)
Q Consensus 432 ~~~~~~~g~~p~~~~~~ 448 (623)
+..+.. ++|..+-.
T Consensus 652 L~~L~~---D~d~~Vrq 665 (963)
T 4ady_A 652 LDPLTK---DPVDFVRQ 665 (963)
T ss_dssp HHHHHT---CSSHHHHH
T ss_pred HHHHcc---CCCHHHHH
Confidence 877764 45555543
No 240
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.30 E-value=4.5 Score=30.37 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=51.3
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (623)
Q Consensus 389 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (623)
+.-+..+-++.+....+.|++....+.+.||.+..++..|.++|+-++.. ..+...+|..+++-+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 89 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHH
Confidence 34467777777778889999999999999999999999999999988743 223355788887653
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.87 E-value=3 Score=41.01 Aligned_cols=114 Identities=16% Similarity=0.090 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHH---HcCCChHHHHHHHHHHHHc--CCC-CCHHHHHHHHHHHHHcCChhH-HHHHHHHHHHCCCCCCHH
Q 006981 91 TLSTFNMLMSVC---ASSKDSEGAFQVLRLVQEA--GLK-ADCKLYTTLITTCAKSGKVDA-MFEVFHEMVNAGIEPNVH 163 (623)
Q Consensus 91 ~~~~~~~li~~~---~~~~~~~~A~~~~~~m~~~--g~~-~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~~~~~ 163 (623)
|...|..++... ...|+.+.|...++.+... |-. ++.. ...+-. ...-++++. ..
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-----------~~~w~~~~r~~l~~~~-------~~ 172 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-----------DFQFVEPFATALVEDK-------VL 172 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TSTTHHHHHHHHHHHH-------HH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-----------chhHHHHHHHHHHHHH-------HH
Confidence 555566665443 3468888888888887753 211 1110 001100 011111111 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006981 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (623)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (623)
+...++..+...|++++|...+..+.... +-+...|..+|.++.+.|+..+|++.|++.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 23334445555555555555555554432 334455555555555555555555555543
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.79 E-value=3.4 Score=40.69 Aligned_cols=72 Identities=14% Similarity=0.183 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 006981 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-----KNVKPDRVVFN 201 (623)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 201 (623)
+...++..+...|+.+++...+..+.... +-+...|..+|.++.+.|+..+|++.|+.... .|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 34456677778888888887777776653 45777888888888888888888888877643 37888776643
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=85.05 E-value=9.7 Score=40.76 Aligned_cols=53 Identities=19% Similarity=0.202 Sum_probs=39.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (623)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (623)
.|...|+++.|+.+-++....- +.+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4556778888888877776653 4457788888888888888888888777764
No 244
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.44 E-value=8.5 Score=28.79 Aligned_cols=86 Identities=12% Similarity=0.140 Sum_probs=52.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (623)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (623)
...++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+. .||...|-+|-. .+.|..+++...+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 356677777777666542 22222223344567777887777766554 677777777654 4667777777777
Q ss_pred HHHHhCCCCCCHHHH
Q 006981 186 GIMRSKNVKPDRVVF 200 (623)
Q Consensus 186 ~~m~~~g~~p~~~~~ 200 (623)
.++..+| .|....|
T Consensus 93 ~~la~sg-~p~~q~F 106 (116)
T 2p58_C 93 NRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHTTCC-CHHHHHH
T ss_pred HHHHhCC-CHHHHHH
Confidence 6776665 3444444
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.16 E-value=26 Score=40.00 Aligned_cols=84 Identities=13% Similarity=0.017 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006981 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE----VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (623)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (623)
|..++..+-+.+.++.+.+.-....+....-+. ..|..+...+...|++++|...+-.+..... -......|+.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHH
Confidence 555666666666666666655544432111111 1455666666667777777666666655432 2445556666
Q ss_pred HHHhcCCHHH
Q 006981 348 ACSNAKNWQK 357 (623)
Q Consensus 348 ~~~~~g~~~~ 357 (623)
..+..|..+.
T Consensus 980 ~lce~~~~~~ 989 (1139)
T 4fhn_B 980 QLTKQGKINQ 989 (1139)
T ss_dssp HHHHHCCHHH
T ss_pred HHHhCCChhh
Confidence 6665555443
No 246
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.77 E-value=8 Score=28.86 Aligned_cols=86 Identities=17% Similarity=0.146 Sum_probs=51.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (623)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (623)
...++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+. .||...|-+|-. .+.|..+++...+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 356677777776666542 22222223344566777777777665554 677777777654 4677777777777
Q ss_pred HHHHhCCCCCCHHHH
Q 006981 186 GIMRSKNVKPDRVVF 200 (623)
Q Consensus 186 ~~m~~~g~~p~~~~~ 200 (623)
.++..+| .|....|
T Consensus 92 ~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 92 AGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHTCS-SHHHHHH
T ss_pred HHHHhCC-CHHHHHH
Confidence 6776665 3444443
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=81.03 E-value=19 Score=38.62 Aligned_cols=128 Identities=16% Similarity=0.096 Sum_probs=76.0
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHccCC-HHHHHHHHHHHhhCC----CCCCC-CHH-
Q 006981 166 GALIDGCAKAGQ-VAKAFGAYGIMRSKNVKPDRVV--FNALITACGQSGA-VDRAFDVLAEMNAEV----HPVDP-DHI- 235 (623)
Q Consensus 166 ~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~-~~~A~~~~~~m~~~~----~~~~~-~~~- 235 (623)
..|+..+...++ .+.|..+|+++.+. .|...+ ...++..+.+.++ --+|.+++.+..+.. ....+ +..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 344444444555 57788899888876 333222 2233333333332 224444444432100 00111 110
Q ss_pred ---------HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 236 ---------TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (623)
Q Consensus 236 ---------~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (623)
....=.+.+...|+++.|+.+-++....- +.+-.+|..|...|.+.|+++.|+-.+..+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11112344567889999999998887764 6667899999999999999999998888774
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=80.63 E-value=20 Score=28.59 Aligned_cols=79 Identities=11% Similarity=0.103 Sum_probs=53.7
Q ss_pred CCCHHHHHHHHHHHHcCCCh---hhHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006981 371 KPTVSTMNALITALCDGDQL---PKTMEVLSDMKSLGLCP--NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (623)
Q Consensus 371 ~~~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~ 445 (623)
.|+..+--.+..++.+.... .+++.+++++.+.+ | ....+-.+.-++.+.|++++|++..+.+.+ ++|+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 46666655666677766654 46788888877654 4 233444555678888999999988888887 567766
Q ss_pred HHHHHHHH
Q 006981 446 MFKCIIGM 453 (623)
Q Consensus 446 ~~~~li~~ 453 (623)
-...|-.+
T Consensus 113 QA~~Lk~~ 120 (134)
T 3o48_A 113 QVGALKSM 120 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555444
No 249
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.81 E-value=15 Score=29.26 Aligned_cols=64 Identities=17% Similarity=0.262 Sum_probs=50.7
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (623)
Q Consensus 390 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (623)
.-+..+-++.+....+.|+.......|.+|.+..++..|.++|+-++.. ..+...+|..+++-+
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 3356666777777789999999999999999999999999999988743 334456788887653
No 250
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=79.03 E-value=66 Score=33.60 Aligned_cols=331 Identities=12% Similarity=0.037 Sum_probs=155.6
Q ss_pred HHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH--
Q 006981 68 FNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA-- 145 (623)
Q Consensus 68 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-- 145 (623)
.....+.+++..-+.++.. ++.+...-.....+....|+..+|....+.+-..| ...+.....++..+.+.|.+..
T Consensus 79 l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~ 156 (618)
T 1qsa_A 79 VNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLA 156 (618)
T ss_dssp HHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHH
Confidence 3334445667777776665 45566655666677777788777777777766655 3344456667777766665433
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHH-----------Hh-cCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHcc
Q 006981 146 MFEVFHEMVNAGIEPNVHTYGALIDGC-----------AK-AGQVAKAFGAYGIMRSKNVKPDRVV---FNALITACGQS 210 (623)
Q Consensus 146 A~~~~~~m~~~g~~~~~~~~~~li~~~-----------~~-~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~ 210 (623)
..+=++.+...| +...-..|+... .. ..+...+...... +.++... +...+.-+.+
T Consensus 157 ~~~R~~~al~~~---~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~rlar- 227 (618)
T 1qsa_A 157 YLERIRLAMKAG---NTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART-----TGATDFTRQMAAVAFASVAR- 227 (618)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH-----SCCCHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc-----cCCChhhHHHHHHHHHHHHh-
Confidence 222222233222 111111111111 00 0011111111110 1122221 1111222223
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHH----HHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 006981 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMK----ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (623)
Q Consensus 211 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~----~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (623)
.+.+.|...+....... .+ +......+-. .....+...++...+....... .+.....-.+..-.+.|+++
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~--~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~ 302 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QL--NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRR 302 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TC--CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHH
T ss_pred cCHHHHHHHHHhhhhcc-CC--CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHH
Confidence 36677887777765421 22 2222222222 2222332445566666544332 33333333444445668888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (623)
Q Consensus 287 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (623)
.|...|..|...... .....--+..++...|+.++|..+|..+.+. . +|-.++ +..+.|..-. +.
T Consensus 303 ~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~---~fYg~l-Aa~~Lg~~~~-------~~ 367 (618)
T 1qsa_A 303 GLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQ---R---GFYPMV-AAQRIGEEYE-------LK 367 (618)
T ss_dssp HHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C---SHHHHH-HHHHTTCCCC-------CC
T ss_pred HHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---ChHHHH-HHHHcCCCCC-------CC
Confidence 888888877653221 3333445555667778888888888877642 1 222222 1122221000 00
Q ss_pred hCCCCC---CHHH---HHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 367 SIKLKP---TVST---MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432 (623)
Q Consensus 367 ~~~~~~---~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 432 (623)
...+.+ .... -..-+..+...|....|...+..+... . +......+.......|..+.+....
T Consensus 368 ~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 368 IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 000000 0101 112345567788888888888777653 2 3233333444445566666665444
No 251
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=78.61 E-value=16 Score=29.15 Aligned_cols=73 Identities=5% Similarity=-0.068 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCH
Q 006981 335 ISVGIISYSSLMGACSNAKN---WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (623)
Q Consensus 335 ~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 409 (623)
-.|+..+--.+..++.+..+ ..+++.+++.+.+.+.......+-.|.-|+.+.|++++|.+..+.+.+ +.|+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 34566666666666666655 345677777776544212344555666777788888888888887776 35653
No 252
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.42 E-value=13 Score=27.91 Aligned_cols=85 Identities=15% Similarity=0.030 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHH
Q 006981 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (623)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 398 (623)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+... .||...|-+|-. .+.|..+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34555555555544432 11111122233455666666666555443 466666655433 23455555555555
Q ss_pred HHHHCCCCCCHHHH
Q 006981 399 DMKSLGLCPNTITY 412 (623)
Q Consensus 399 ~m~~~g~~p~~~t~ 412 (623)
++..+| .|....|
T Consensus 94 ~la~sg-~p~~q~F 106 (116)
T 2p58_C 94 RLARSQ-DPRIQTF 106 (116)
T ss_dssp HHTTCC-CHHHHHH
T ss_pred HHHhCC-CHHHHHH
Confidence 555444 3444433
No 253
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=74.96 E-value=24 Score=26.41 Aligned_cols=79 Identities=19% Similarity=0.092 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 006981 39 GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLV 118 (623)
Q Consensus 39 g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 118 (623)
.+.+||..+-+.+...+. ...+...-.....+.|++++|..+.+....||...|-+|-. .+.|-.+++..-+.++
T Consensus 20 H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ---DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 467888888888887762 22222222233456688888888888888888888877644 3566667776666666
Q ss_pred HHcC
Q 006981 119 QEAG 122 (623)
Q Consensus 119 ~~~g 122 (623)
...|
T Consensus 95 a~sg 98 (115)
T 2uwj_G 95 GGSS 98 (115)
T ss_dssp HTCS
T ss_pred HhCC
Confidence 6655
No 254
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=74.04 E-value=26 Score=26.39 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (623)
Q Consensus 287 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (623)
+..+-++.+...++.|+.....+.+.+|.+.+++..|.++++-++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444444444445555555555555555555555555555554443
No 255
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=67.17 E-value=47 Score=26.55 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (623)
Q Consensus 286 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (623)
-+..+-++.+...++.|+.....+.+.+|-+.+++..|.++|+-++.+
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 345555555556666667766777777777777777777776666544
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=64.73 E-value=41 Score=28.02 Aligned_cols=60 Identities=5% Similarity=-0.065 Sum_probs=37.7
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcC-CCCCH-------HHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006981 96 NMLMSVCASSKDSEGAFQVLRLVQEAG-LKADC-------KLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (623)
Q Consensus 96 ~~li~~~~~~~~~~~A~~~~~~m~~~g-~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~ 155 (623)
-.-++.+...+.++.|+-+.+.+.... ..|+. .++..+.+++...|++..|...|++..+
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 334555666777777777766654321 12331 2556677778888888888888887643
No 257
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=63.76 E-value=37 Score=28.29 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=32.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcC-CCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 239 ALMKACANAGQVDRAREVYKMIHKYN-IKGT-------PEVYTIAINCCSQTGDWEFACSVYDDMT 296 (623)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~-~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (623)
.-+..+...+.++.|+-+.+.+.... ..++ ..++..+.+++...+++..|...|++.+
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 33555566667777766666543321 1222 1244555666666667777766666654
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=63.20 E-value=43 Score=30.49 Aligned_cols=54 Identities=13% Similarity=0.142 Sum_probs=35.5
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 137 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (623)
..+.|+++++++....-++.. +-|...-..|+..+|-.|++++|.+-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 445667777776666666554 446666667777777777777777766666554
No 259
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=62.23 E-value=61 Score=26.19 Aligned_cols=80 Identities=10% Similarity=0.072 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHHHHcCCCh---hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006981 371 KPTVSTMNALITALCDGDQL---PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447 (623)
Q Consensus 371 ~~~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~ 447 (623)
.|+..+--.+..++.+.... .+++.+++++.+.+..-.....-.+.-++.+.|++++|+++.+.+++ ++|+..-.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHH
Confidence 46666666666677776654 46777888877643111222333445678888888888888888887 56766555
Q ss_pred HHHHH
Q 006981 448 KCIIG 452 (623)
Q Consensus 448 ~~li~ 452 (623)
..|-.
T Consensus 114 ~~Lk~ 118 (144)
T 1y8m_A 114 GALKS 118 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 260
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=60.85 E-value=19 Score=31.17 Aligned_cols=62 Identities=16% Similarity=0.151 Sum_probs=41.2
Q ss_pred hhhHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhC
Q 006981 26 SEQLHSYNRLIRQ---GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87 (623)
Q Consensus 26 ~~~~~~~~~l~~~---g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 87 (623)
..++..|=.+++. +...++.++|..|...|+-...+.++...+..+-..|++.+|.++|+..
T Consensus 77 ~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 141 (202)
T 3esl_A 77 PRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELG 141 (202)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5567777777754 4477888888888888876555555555555555556666666666544
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.04 E-value=42 Score=33.29 Aligned_cols=12 Identities=17% Similarity=0.243 Sum_probs=5.3
Q ss_pred CCHHHHHHHHHH
Q 006981 283 GDWEFACSVYDD 294 (623)
Q Consensus 283 g~~~~A~~l~~~ 294 (623)
+++.+|...|-+
T Consensus 222 r~f~~Aa~~f~e 233 (429)
T 4b4t_R 222 RNFKEAAKLLVD 233 (429)
T ss_dssp SCHHHHHHHHHH
T ss_pred ChHHHHHHHHHH
Confidence 444444444443
No 262
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=59.62 E-value=86 Score=27.05 Aligned_cols=56 Identities=7% Similarity=0.075 Sum_probs=37.1
Q ss_pred CCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 006981 105 SKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160 (623)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 160 (623)
.+....+..+|..|...|+.-. ..-|......+...|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3345577777777777766543 4456666666777777777777777777666555
No 263
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=59.17 E-value=70 Score=25.86 Aligned_cols=72 Identities=6% Similarity=-0.057 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCH
Q 006981 336 SVGIISYSSLMGACSNAKN---WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (623)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 409 (623)
.|+..+--.+..++.+..+ ..++..+++.+.+.+........-.|.-++.+.|++++|.++.+.+++ +.|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 4666666666667777665 346777777776643222334444566788888888888888888887 46753
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.14 E-value=1.2e+02 Score=29.97 Aligned_cols=61 Identities=13% Similarity=0.006 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 236 TIGALMKACANAGQVDRAREVYKMIHKYNIK--GTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (623)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (623)
+...+...|.+.|+++.|.+.|.++...... .-...+-..|..+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4456777777788888888887777654222 224456666777777777777777766654
No 265
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=57.23 E-value=92 Score=26.66 Aligned_cols=18 Identities=6% Similarity=-0.021 Sum_probs=8.5
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 006981 160 PNVHTYGALIDGCAKAGQ 177 (623)
Q Consensus 160 ~~~~~~~~li~~~~~~g~ 177 (623)
++..+-...+.++.+.++
T Consensus 93 ~~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGD 110 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 444444444444444444
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=56.01 E-value=1.4e+02 Score=28.26 Aligned_cols=134 Identities=13% Similarity=0.068 Sum_probs=73.7
Q ss_pred hhhhHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 006981 25 VSEQLHSYNRLIRQGRI---SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSV 101 (623)
Q Consensus 25 ~~~~~~~~~~l~~~g~~---~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~ 101 (623)
+...+.-...-|..|++ =||.+.++.+..+ +.+.+++++|+.++-.. ...
T Consensus 12 ~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~R----------------y~~~k~y~eAidLL~~G-----------A~~ 64 (336)
T 3lpz_A 12 IERIIARLQRRIAEGQPEEQYEAAQETRLVAAR----------------YSKQGNWAAAVDILASV-----------SQT 64 (336)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH----------------HHHTTCHHHHHHHHHHH-----------HHH
T ss_pred HHHHHHHHHHHHhCCCCccccHHHHHHHHHHHH----------------HHhhcCHHHHHHHHHHH-----------HHH
Confidence 34445556666788888 7777777655432 33445667776654321 123
Q ss_pred HHcCCChHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHHHcCChhH-HHHHHHHHH----HCC--CCCCHHHHHHHHH
Q 006981 102 CASSKDSEGAFQV----LRLVQEAGLKADCKLYTTLITTCAKSGKVDA-MFEVFHEMV----NAG--IEPNVHTYGALID 170 (623)
Q Consensus 102 ~~~~~~~~~A~~~----~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~----~~g--~~~~~~~~~~li~ 170 (623)
+.+.|+...|-++ .+-..+.++++|......|+..+.....-+- =.++.++++ +.| ..-|......+..
T Consensus 65 ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~ 144 (336)
T 3lpz_A 65 LLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGT 144 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Confidence 4445555544444 3555567788888777777777766553221 122222222 111 1234555566666
Q ss_pred HHHhcCCHHHHHHHH
Q 006981 171 GCAKAGQVAKAFGAY 185 (623)
Q Consensus 171 ~~~~~g~~~~A~~~~ 185 (623)
.|.+.+++.+|..-|
T Consensus 145 ~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 145 LYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHccCCHHHHHHHH
Confidence 666777766666555
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=55.91 E-value=1.3e+02 Score=28.06 Aligned_cols=135 Identities=13% Similarity=0.106 Sum_probs=75.2
Q ss_pred hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHc
Q 006981 25 VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCAS 104 (623)
Q Consensus 25 ~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 104 (623)
+...+.....-|..|++=||.+.+..+..+ +.+.+++++|+.++... ...+.+
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~R----------------y~~~~~~~eAidlL~~g-----------a~~ll~ 65 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANR----------------YVRSKSYEHAIELISQG-----------ALSFLK 65 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------HHHTTCHHHHHHHHHHH-----------HHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHH----------------HHHhcCHHHHHHHHHHH-----------HHHHHH
Confidence 444555566667788888888777765433 22334566666554321 122344
Q ss_pred CCChHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHHHcCChh-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHH
Q 006981 105 SKDSEGAFQV----LRLVQEAGLKADCKLYTTLITTCAKSGKVD-AMFEVFHEMV----NAG--IEPNVHTYGALIDGCA 173 (623)
Q Consensus 105 ~~~~~~A~~~----~~~m~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~----~~g--~~~~~~~~~~li~~~~ 173 (623)
.|+...|-++ .+-..+.+++++......++..+.....-+ .=.++.++++ +.| ..-+......+...|.
T Consensus 66 ~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~ 145 (312)
T 2wpv_A 66 AKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLL 145 (312)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHh
Confidence 5555544443 444555677888777777777766543211 1123333332 222 1235666777777777
Q ss_pred hcCCHHHHHHHHH
Q 006981 174 KAGQVAKAFGAYG 186 (623)
Q Consensus 174 ~~g~~~~A~~~~~ 186 (623)
+.|++.+|..-|-
T Consensus 146 ~e~~~~~A~~H~i 158 (312)
T 2wpv_A 146 EGDFVYEAERYFM 158 (312)
T ss_dssp HTTCHHHHHHHHH
T ss_pred hcCCHHHHHHHHH
Confidence 7777777766553
No 268
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=55.90 E-value=54 Score=29.83 Aligned_cols=113 Identities=12% Similarity=0.125 Sum_probs=72.1
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhc
Q 006981 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH----TYGALIDGCAKA 175 (623)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~li~~~~~~ 175 (623)
....+.|++++|++....-++.. |-|...-..|+..+|-.|+++.|.+-++...+. .|+.. .|..+|.+=.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~aE~-- 79 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQ-- 79 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHH--
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHHHH--
Confidence 34567889999999998888875 778888889999999999999999888887765 34432 3444433211
Q ss_pred CCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHH--ccCCHHHHHHHHHHHhh
Q 006981 176 GQVAKAFGAYGIMRSKNVKP-----DRVVFNALITACG--QSGAVDRAFDVLAEMNA 225 (623)
Q Consensus 176 g~~~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~ 225 (623)
.=.+...-+-.| ...-...++.+.. ..|+.++|..+-.++..
T Consensus 80 --------~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 80 --------ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp --------HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --------HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 111222211111 2223344555544 34888888887776644
No 269
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=55.69 E-value=0.0087 Score=59.15 Aligned_cols=245 Identities=14% Similarity=0.100 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (623)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (623)
..|..|..+..+.++..+|++-|-+ .-|+..|..+|.+..+.|.+++-.+.+...++. ..+...=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHH
Confidence 4588888888888888877765521 235667888899988899998888888666554 33445556888889
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC------------------CCCCCH
Q 006981 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH------------------PVDPDH 234 (623)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------------------~~~~~~ 234 (623)
++.++..+-.+.+ -.||..-...+..-|...|.++.|.-+|..+..-.. .-..+.
T Consensus 127 Ak~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 9988865543322 146666677788888888888888877766532100 001234
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006981 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (623)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 314 (623)
.||..+-.+|...+.+..|.-.--.+.-.. .-...++..|-..|.+++.+.+++.-.... ......|+-|.-.|
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILY 273 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 273 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHH
Confidence 456666666666665554433322222110 112335555666666666666666544221 22445555555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (623)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (623)
++- +.++..+-++.... +.|. --+|++|.+...|.++.-++..-
T Consensus 274 sKY-~PeKlmEHlklf~s---riNi---pKviracE~ahLW~ElvfLY~~y 317 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWS---RVNI---PKVLRAAEQAHLWAELVFLYDKY 317 (624)
T ss_dssp HSS-CTTHHHHHHTTSSS---SSCC---TTTHHHHTTTTCHHHHHHHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHH---hccH---HHHHHHHHHHhhHHHHHHHHhcc
Confidence 543 23333322222111 1111 12455555555555555555443
No 270
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=51.02 E-value=19 Score=29.57 Aligned_cols=39 Identities=8% Similarity=-0.088 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH
Q 006981 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128 (623)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~ 128 (623)
.-+..|......+-..|++.+|.++|+.-.+.+..|-..
T Consensus 99 ~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 99 LSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 445556667777777888888888888887777666443
No 271
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=48.96 E-value=0.043 Score=54.37 Aligned_cols=197 Identities=14% Similarity=0.133 Sum_probs=130.7
Q ss_pred HHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 006981 67 FFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146 (623)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 146 (623)
++++....+.+.+|+.-|=+. .|+..|..+|.++.+.|.+++-+..+...++.. .++..=+.|+-+|++.+++.+-
T Consensus 60 LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~el 135 (624)
T 3lvg_A 60 LAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAEL 135 (624)
T ss_dssp HHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTT
T ss_pred HHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHH
Confidence 444444555566666655443 455668899999999999999998887666553 3444556799999999987764
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------------------CCCCHHHHHHHHHH
Q 006981 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN--------------------VKPDRVVFNALITA 206 (623)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------------------~~p~~~~~~~li~~ 206 (623)
.+++. .||..-...+.+-|...|.++.|.-+|..+.... -.-++.||-.+-.+
T Consensus 136 Eefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~A 208 (624)
T 3lvg_A 136 EEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA 208 (624)
T ss_dssp TSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHH
T ss_pred HHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 43321 3455445555666666666666665554432110 02367889999999
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 006981 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (623)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (623)
|...+++.-|.-.--.+.- .+| -...++..|-+.|.+++-+.+++.-.... ......|+-|.-.|++-
T Consensus 209 Cvd~~EfrLAqicGLniIv-----had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 209 CVDGKEFRLAQMCGLHIVV-----HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 276 (624)
T ss_dssp HHHSCTTTTTTHHHHHHHC-----CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS
T ss_pred HhCchHHHHHHHhcchhcc-----cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc
Confidence 9999988776655444432 222 22346677889999999999998876543 45567888888888876
No 272
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=46.90 E-value=1.9e+02 Score=27.27 Aligned_cols=135 Identities=12% Similarity=0.116 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH----HHHHHHHHCCCCCCHHHHHHHH
Q 006981 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF----EILQEAKNQGISVGIISYSSLM 346 (623)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~----~~~~~~~~~~~~~~~~~~~~li 346 (623)
.|.++..-|.+.+++++|++++..--. .+.+.|+...|- -+.+-..+.++++|......|+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344455556677777777776543211 122223333322 2233334455666666666666
Q ss_pred HHHHhcCCHHHH-HHHHHHHH----hCC--CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 347 GACSNAKNWQKA-LELYEHMK----SIK--LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (623)
Q Consensus 347 ~~~~~~g~~~~A-~~~~~~m~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 419 (623)
..+.....-+-. .++.+++. +.| ..-|...-..+...|.+.+++.+|...|- .|-.+...+|..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence 655554431100 11222221 111 23456666677778888888888877762 23344446776666555
Q ss_pred HhcCC
Q 006981 420 ERKDD 424 (623)
Q Consensus 420 ~~~g~ 424 (623)
...+.
T Consensus 178 ~~~~~ 182 (336)
T 3lpz_A 178 YKQDE 182 (336)
T ss_dssp HHTSC
T ss_pred HHhcC
Confidence 55444
No 273
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=46.61 E-value=1.3e+02 Score=25.35 Aligned_cols=50 Identities=10% Similarity=0.086 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006981 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (623)
Q Consensus 125 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 178 (623)
++..+-...+.++++.++.+.. ..+..+.. .++..+-...+.++.+.++.
T Consensus 57 ~~~~vr~~a~~~L~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~ 106 (201)
T 3ltj_A 57 EDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAAVALGQIGDE 106 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCG
T ss_pred CCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHHHHHHHhCcH
Confidence 3444444455555555543222 22222222 34555555555555555543
No 274
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=44.00 E-value=36 Score=28.34 Aligned_cols=38 Identities=3% Similarity=-0.117 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~ 128 (623)
-+..|......+-..|++.+|.++|+.-++.+..|-..
T Consensus 95 ~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 95 LAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 34445555556666777777777777777776666543
No 275
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=42.43 E-value=2.3e+02 Score=26.99 Aligned_cols=77 Identities=12% Similarity=0.174 Sum_probs=50.7
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD--VEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (623)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 453 (623)
..+.++.=|...|+.++|.+.++++..-.+. .......+..+.-+.++ .+...+++..+.+.|+-+.......+...
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3567888899999999999999998632111 23344555556555433 45677888888877776655555544443
No 276
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=41.56 E-value=28 Score=30.67 Aligned_cols=59 Identities=12% Similarity=0.221 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhh
Q 006981 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86 (623)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 86 (623)
..++..|=.+++. .+++.++|..|...|+-...+.++...+..+-..|++.+|..+|..
T Consensus 117 ~RyLklWl~Ya~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 175 (223)
T 4aez_C 117 VRYLRIWMQYVNY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQK 175 (223)
T ss_dssp HHHHHHHHHHHTT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4566666666653 3567778888877776555555544444444444555555555543
No 277
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=41.39 E-value=1.7e+02 Score=25.15 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=9.2
Q ss_pred CCHHHHHHHHHHHHhCC
Q 006981 283 GDWEFACSVYDDMTKKG 299 (623)
Q Consensus 283 g~~~~A~~l~~~m~~~~ 299 (623)
.+++.|+-.+-+|++.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 44555555555555555
No 278
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=40.07 E-value=1.5e+02 Score=24.17 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 006981 111 AFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160 (623)
Q Consensus 111 A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 160 (623)
+..+|..|...|+.-. ..-|......+-..|++.+|.++|..-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 6666666666665443 3455566666666666666666666666655555
No 279
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=38.97 E-value=39 Score=29.73 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=12.3
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCC
Q 006981 135 TTCAKSGKVDAMFEVFHEMVNAGI 158 (623)
Q Consensus 135 ~~~~~~g~~~~A~~~~~~m~~~g~ 158 (623)
...++.|+.+....+++.+.+.|.
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~ 37 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGR 37 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC
Confidence 344455565555555555444443
No 280
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=38.33 E-value=2e+02 Score=25.45 Aligned_cols=27 Identities=11% Similarity=-0.122 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 269 PEVYTIAINCCSQTGDWEFACSVYDDM 295 (623)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~A~~l~~~m 295 (623)
+......+..+.+.|+.++|.++|-+.
T Consensus 91 ~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 91 IVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 444455555566666666666665443
No 281
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=37.56 E-value=29 Score=31.57 Aligned_cols=12 Identities=17% Similarity=0.088 Sum_probs=5.0
Q ss_pred HHHHHHHHHCCC
Q 006981 324 FEILQEAKNQGI 335 (623)
Q Consensus 324 ~~~~~~~~~~~~ 335 (623)
.++.+.+.+.|.
T Consensus 199 ~~i~~~Ll~~g~ 210 (285)
T 1wdy_A 199 EAITHLLLDHGA 210 (285)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 334444444443
No 282
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=37.27 E-value=3e+02 Score=26.70 Aligned_cols=27 Identities=11% Similarity=-0.031 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHh
Q 006981 198 VVFNALITACGQSGAVDRAFDVLAEMN 224 (623)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (623)
.....|...|.+.|+.++..+++....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344556666677777776666666543
No 283
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=37.03 E-value=2.8e+02 Score=26.41 Aligned_cols=25 Identities=12% Similarity=0.127 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 272 YTIAINCCSQTGDWEFACSVYDDMT 296 (623)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m~ 296 (623)
.+.++.-|...|+.++|.+.++++.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHcc
Confidence 3455566666666666666666654
No 284
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=36.98 E-value=57 Score=28.60 Aligned_cols=86 Identities=13% Similarity=0.090 Sum_probs=44.6
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHh
Q 006981 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCK--LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHT--YGALIDGCAK 174 (623)
Q Consensus 99 i~~~~~~~~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~li~~~~~ 174 (623)
+...+..|+.+....+++.+.+.|..++.. .-.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 444566788887777777766666544322 1122344455666654 3344445554443211 1123334456
Q ss_pred cCCHHHHHHHHHHH
Q 006981 175 AGQVAKAFGAYGIM 188 (623)
Q Consensus 175 ~g~~~~A~~~~~~m 188 (623)
.|+.+-+..+++..
T Consensus 89 ~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 89 HRSPTCLRALLDSA 102 (241)
T ss_dssp TTCHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHcC
Confidence 67766555555543
No 285
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=36.80 E-value=2e+02 Score=25.46 Aligned_cols=89 Identities=11% Similarity=0.097 Sum_probs=46.8
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 98 LMSVCASSKDSEGAFQVLRLVQEA--GLKA----DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (623)
Q Consensus 98 li~~~~~~~~~~~A~~~~~~m~~~--g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (623)
-++.+....++++|..++++..+. ++++ +.......+..-.....-.-+..+.+++.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 356777788888888888766542 2221 111122223333333333334444444422 3345555566667
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 006981 172 CAKAGQVAKAFGAYGIMR 189 (623)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~ 189 (623)
+.+.|+-++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 777777777777775543
No 286
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=34.61 E-value=1.7e+02 Score=25.03 Aligned_cols=35 Identities=17% Similarity=-0.049 Sum_probs=19.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006981 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (623)
Q Consensus 282 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 316 (623)
..+++.|+-.+-+|++.|-.|....-..++-+...
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsED 54 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIASED 54 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 35667777777777776665544444444444433
No 287
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=32.50 E-value=1.4e+02 Score=21.77 Aligned_cols=63 Identities=11% Similarity=0.147 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHH
Q 006981 44 CIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGA 111 (623)
Q Consensus 44 A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 111 (623)
.-.+++.+.+.++++... .-. .-......+.|.++++.++.....+|..++.++.+.+...-|
T Consensus 24 v~~lld~L~~~~vlt~~~-~e~----I~~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTISE-EEK----VRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTSSCHHH-HHH----HHTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCCCHHH-HHH----HHcCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 346788888888764332 111 112245678889999988888888888888888877754433
No 288
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=32.28 E-value=2.2e+02 Score=24.60 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006981 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (623)
Q Consensus 283 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 315 (623)
.+++.|+-.+-+|++.|-.|....-..++-+..
T Consensus 49 SDpDAALywLaRMl~~GEDp~~IaRRLvi~AsE 81 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDPNFIFRRLLISACE 81 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 556666666666666665554444344444433
No 289
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=32.14 E-value=2.2e+02 Score=23.61 Aligned_cols=51 Identities=12% Similarity=0.280 Sum_probs=29.9
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 006981 111 AFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN 161 (623)
Q Consensus 111 A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 161 (623)
+..+|..|...|+.-. ...|......+-..|++.+|.++|..-++.+..|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 5556666666655433 33455555556666666666666666666555553
No 290
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.56 E-value=2.3e+02 Score=31.34 Aligned_cols=49 Identities=10% Similarity=-0.035 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcC
Q 006981 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAG 176 (623)
Q Consensus 128 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g 176 (623)
.-|..++..+-+.+.++.+.++-+..++.--.-|. ..|+.+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 36788888888899998888888877764222233 35677777766554
No 291
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=31.37 E-value=1.2e+02 Score=23.82 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=12.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 273 TIAINCCSQTGDWEFACSVYDDMT 296 (623)
Q Consensus 273 ~~li~~~~~~g~~~~A~~l~~~m~ 296 (623)
+.++.-|...|+.++|.+.++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 344555555555555555555543
No 292
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=30.62 E-value=3.3e+02 Score=25.31 Aligned_cols=115 Identities=15% Similarity=0.081 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHhCCCCCCHHHHHHHH
Q 006981 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA----YGIMRSKNVKPDRVVFNALI 204 (623)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~~~~~li 204 (623)
.|.++..-|.+.+++++|++++..-. ..+.+.|+...|-++ .+-..+.+++++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45566677778888888877765432 123445665444443 44445566777766666666
Q ss_pred HHHHccCCHH-HHHHHHHHHh----hCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 006981 205 TACGQSGAVD-RAFDVLAEMN----AEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258 (623)
Q Consensus 205 ~~~~~~g~~~-~A~~~~~~m~----~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 258 (623)
..+.....-+ .=.++++++. +.+..-.-|......+...|.+.|++.+|+..|-
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 5554422100 0011111111 1110012344455555666666666666665543
No 293
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=30.18 E-value=93 Score=20.63 Aligned_cols=29 Identities=10% Similarity=0.127 Sum_probs=21.4
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHcCCCCCch
Q 006981 33 NRLIRQG-RISECIDLLEDMERKGLLDMDK 61 (623)
Q Consensus 33 ~~l~~~g-~~~~A~~l~~~m~~~~~~~~~~ 61 (623)
.+|-.+| +++.|...|.++...|.+|+.+
T Consensus 27 ~cL~~~~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 27 KCLQDNNWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 3444544 8899999999998888777654
No 294
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=30.04 E-value=2.8e+02 Score=24.28 Aligned_cols=51 Identities=20% Similarity=0.190 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006981 145 AMFEVFHEMVNAGIEP-NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195 (623)
Q Consensus 145 ~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 195 (623)
.+.++|..|...|+-. -...|......+-..|++.+|..+|+.-++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4445555555554332 23344455555555555555555555555544333
No 295
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=29.82 E-value=71 Score=28.77 Aligned_cols=23 Identities=9% Similarity=-0.087 Sum_probs=13.2
Q ss_pred cCCChhhHHHHHHHHHHCCCCCC
Q 006981 386 DGDQLPKTMEVLSDMKSLGLCPN 408 (623)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p~ 408 (623)
..+......++++.+.+.|..++
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HccccchHHHHHHHHHHcCCCCC
Confidence 34554455566666666665554
No 296
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=29.64 E-value=1.2e+02 Score=28.36 Aligned_cols=105 Identities=14% Similarity=0.127 Sum_probs=51.0
Q ss_pred HHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHcCCChhhHHHHHHH
Q 006981 325 EILQEAKNQGISVGII--SYSSLMGACSNAKNWQKALELYEHMKSIKLKP---TVSTMNALITALCDGDQLPKTMEVLSD 399 (623)
Q Consensus 325 ~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~ 399 (623)
.+.+.+.+.|..++.. ...+.+...+..|..+....++.. .|..+ |..-++.|..+ ++.|+. ++.+.
T Consensus 220 ~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A-~~~g~~----~iv~~ 291 (337)
T 4g8k_A 220 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLA-VELKLK----KIAEL 291 (337)
T ss_dssp HHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHH-HHTTCH----HHHHH
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHHH-HHcCCH----HHHHH
Confidence 3444455666554422 112334455667777665554432 12222 22222333333 344554 34455
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006981 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444 (623)
Q Consensus 400 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~ 444 (623)
+++.|..||..+ .+...++.|+.+ +.+.+++.|-.||.
T Consensus 292 Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 292 LCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 567777777554 233345566654 45556677877764
No 297
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=29.53 E-value=5e+02 Score=26.96 Aligned_cols=354 Identities=10% Similarity=0.021 Sum_probs=184.9
Q ss_pred cCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHh------------------hhHHHHHHHHH
Q 006981 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK------------------SQKAIKEAFRF 83 (623)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~------------------~~~~~~~A~~~ 83 (623)
|.+..-.+..+..+...|+-.+|......+-..|.. ....+..++.... ..|+...|..+
T Consensus 99 p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~--~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l 176 (618)
T 1qsa_A 99 PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS--QPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVL 176 (618)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC--CCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC--CcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 566677777888888889988888877777666532 1111222222221 22344555555
Q ss_pred hhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 006981 84 FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL---YTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160 (623)
Q Consensus 84 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 160 (623)
...+++........++....+- ..+...... +.++... +...+.-+.+. +.+.|...+....+.. ..
T Consensus 177 ~~~l~~~~~~~a~~~~al~~~p---~~~~~~~~~-----~~~~~~~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~-~~ 246 (618)
T 1qsa_A 177 AGQMPADYQTIASAIISLANNP---NTVLTFART-----TGATDFTRQMAAVAFASVARQ-DAENARLMIPSLAQAQ-QL 246 (618)
T ss_dssp HHTCCGGGHHHHHHHHHHHHCG---GGHHHHHHH-----SCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHT-TC
T ss_pred HHhCCHHHHHHHHHHHHHHhCh---HhHHHHHhc-----cCCChhhHHHHHHHHHHHHhc-CHHHHHHHHHhhhhcc-CC
Confidence 5555322222333344333322 222222211 1333322 22223333333 7788999998886543 22
Q ss_pred CHHHHHHH----HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHH
Q 006981 161 NVHTYGAL----IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236 (623)
Q Consensus 161 ~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 236 (623)
+......+ ...+...+...++...+....... ++.....-.+....+.|+++.|.+.|..|.... ......
T Consensus 247 ~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~---~~~~r~ 321 (618)
T 1qsa_A 247 NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA---KEKDEW 321 (618)
T ss_dssp CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG---GGSHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccc---cccHhH
Confidence 33333322 223333443556666776655442 333334444455567799999999999886531 122333
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHH---HHHH
Q 006981 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVF---LSAL 310 (623)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p---~~~~---~~~l 310 (623)
.--+..++...|+.++|..+|..+.... +|-.++.. .+.|..-. +....+.+ .... -...
T Consensus 322 ~YW~~ra~~~~g~~~~a~~~~~~~a~~~------~fYg~lAa-~~Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~r 387 (618)
T 1qsa_A 322 RYWQADLLLERGREAEAKEILHQLMQQR------GFYPMVAA-QRIGEEYE-------LKIDKAPQNVDSALTQGPEMAR 387 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSC------SHHHHHHH-HHTTCCCC-------CCCCCCCSCCCCHHHHSHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCC------ChHHHHHH-HHcCCCCC-------CCCCCCChhHHhhhccChHHHH
Confidence 3445667788899999999999887531 22222211 12221100 00000000 0111 1123
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHc
Q 006981 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL----KPTVSTMNALITALCD 386 (623)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~~~~~li~~~~~ 386 (623)
+..+...|....|...+..+.+.. +......+.......|..+.+..........+. -| ..|..++..+++
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~~~---~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P--~~y~~~i~~~a~ 462 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVKSK---SKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFP--LAYNDLFKRYTS 462 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSC--CTTHHHHHHHHT
T ss_pred HHHHHHCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCC--cchHHHHHHHHH
Confidence 345677899999988888877642 333344555556678888877765544332110 01 135667777777
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHH
Q 006981 387 GDQLPKTMEVLSDMKSLGLCPNTIT 411 (623)
Q Consensus 387 ~g~~~~A~~l~~~m~~~g~~p~~~t 411 (623)
...++.++-.---..++++.|+.++
T Consensus 463 ~~gv~~~ll~Ai~~~ES~f~p~a~S 487 (618)
T 1qsa_A 463 GKEIPQSYAMAIARQESAWNPKVKS 487 (618)
T ss_dssp TSSSCHHHHHHHHHHHHTTCTTCBC
T ss_pred HcCCCHHHHHHHHHHhCCCCCCCcC
Confidence 7667766554444556777776543
No 298
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=26.29 E-value=2.5e+02 Score=22.84 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=11.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHH
Q 006981 201 NALITACGQSGAVDRAFDVLAEM 223 (623)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m 223 (623)
..++.-|...|+.++|.+.++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 34444454555555555555544
No 299
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=24.83 E-value=66 Score=31.64 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=6.8
Q ss_pred HHhcCCHHHHHHHH
Q 006981 172 CAKAGQVAKAFGAY 185 (623)
Q Consensus 172 ~~~~g~~~~A~~~~ 185 (623)
.++.|+.+-+..++
T Consensus 120 A~~~g~~~~v~~Ll 133 (437)
T 1n11_A 120 AAREGHVETVLALL 133 (437)
T ss_dssp HHHHTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 34555555444443
No 300
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=24.26 E-value=1.1e+02 Score=24.96 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=12.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 006981 273 TIAINCCSQTGDWEFACSVYDDM 295 (623)
Q Consensus 273 ~~li~~~~~~g~~~~A~~l~~~m 295 (623)
+.++.-|...|+.++|.+.++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 34455555555555555555554
No 301
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=23.54 E-value=2.9e+02 Score=23.15 Aligned_cols=29 Identities=17% Similarity=0.052 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 409 TITYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 409 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
...++-+...|.+.|+.++|+..+..--.
T Consensus 114 EfFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 114 EFFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 34456666788999999999999976543
No 302
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=22.70 E-value=2.8e+02 Score=21.72 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=11.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHH
Q 006981 201 NALITACGQSGAVDRAFDVLAEM 223 (623)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m 223 (623)
..++.-|...|+.++|.+.++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 34444455555555555555554
No 303
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=22.67 E-value=60 Score=27.47 Aligned_cols=15 Identities=7% Similarity=0.095 Sum_probs=8.5
Q ss_pred HHHHHHHHHCCCCCC
Q 006981 394 MEVLSDMKSLGLCPN 408 (623)
Q Consensus 394 ~~l~~~m~~~g~~p~ 408 (623)
.++++.+.+.|..|+
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 455555666665554
No 304
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=22.08 E-value=4.2e+02 Score=23.56 Aligned_cols=236 Identities=11% Similarity=-0.015 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHhCCCCCCHHH
Q 006981 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ----VAKAFGAYGIMRSKNVKPDRVV 199 (623)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~~~~ 199 (623)
.++..+-...+.++.+.+..+....+...+. .++...-...+.++.+.|. ....+.++..+... .++..+
T Consensus 34 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~----d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~~~v 107 (280)
T 1oyz_A 34 DHNSLKRISSARVLQLRGGQDAVRLAIEFCS----DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKSACV 107 (280)
T ss_dssp CSSHHHHHHHHHHHHHHCCHHHHHHHHHHHT----CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSCHHH
T ss_pred cCCHHHHHHHHHHHHccCCchHHHHHHHHHc----CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCCHHH
Q ss_pred HHHHHHHHHccCC-----HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHH
Q 006981 200 FNALITACGQSGA-----VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274 (623)
Q Consensus 200 ~~~li~~~~~~g~-----~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 274 (623)
-...+.++.+.+. ...+...+..... .++..+-...+.++.+.|+ ..+...+..+.+ .++..+-..
T Consensus 108 r~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~-----d~~~~vR~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~ 178 (280)
T 1oyz_A 108 RATAIESTAQRCKKNPIYSPKIVEQSQITAF-----DKSTNVRRATAFAISVIND-KATIPLLINLLK---DPNGDVRNW 178 (280)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT-----CSCHHHHHHHHHHHHTC----CCHHHHHHHHT---CSSHHHHHH
T ss_pred HHHHHHHHHHHhccCCcccHHHHHHHHHHhh-----CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHc---CCCHHHHHH
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006981 275 AINCCSQTG-DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353 (623)
Q Consensus 275 li~~~~~~g-~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 353 (623)
.+.++.+.+ ....+...+..+... ++...-...+.++.+.|.......+...+.... +....+.++.+.|
T Consensus 179 a~~aL~~~~~~~~~~~~~L~~~l~d---~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d~~------vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 179 AAFAININKYDNSDIRDCFVEMLQD---KNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNT------VYDDIIEAAGELG 249 (280)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHTTC---SCHHHHHHHHHHHHHTTCGGGHHHHHHHHTSSS------CCHHHHHHHHHHC
T ss_pred HHHHHHhhccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHhCCHhhHHHHHHHhcCcc------HHHHHHHHHHhcC
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006981 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (623)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (623)
. ..+...+..+.+. .++.......+..+.+
T Consensus 250 ~-~~~~~~L~~~l~~--~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 250 D-KTLLPVLDTMLYK--FDDNEIITSAIDKLKR 279 (280)
T ss_dssp C-GGGHHHHHHHHTT--SSCCHHHHHHHHHHTC
T ss_pred c-hhhhHHHHHHHhc--CCCcHHHHHHHHHhhc
No 305
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.76 E-value=3e+02 Score=22.15 Aligned_cols=67 Identities=10% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006981 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353 (623)
Q Consensus 286 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 353 (623)
.....+-+.+.+.|.. ...--..++..+...+..-.|.++++.+.+.+...+..|..--++.+...|
T Consensus 9 ~~~~~~~~~l~~~g~r-~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 9 SILERLRMSIKKNGLK-NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHHHHHCC---CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
No 306
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.71 E-value=3e+02 Score=21.66 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006981 116 RLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (623)
Q Consensus 116 ~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (623)
+.+.+.|++++..=.. ++..+...+ ..-.|.++++.+.+.+...+..|..--++.+.+.|
T Consensus 7 ~~l~~~g~r~T~qR~~-Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 7 SELRKAGLKVTLPRVK-ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHTTCCCCHHHHH-HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
No 307
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=21.59 E-value=2.7e+02 Score=23.27 Aligned_cols=28 Identities=11% Similarity=0.268 Sum_probs=12.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 006981 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPN 161 (623)
Q Consensus 134 i~~~~~~g~~~~A~~~~~~m~~~g~~~~ 161 (623)
+...+..|+.+.-.++.+.+.+.|..++
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 3333444444444445555555554443
No 308
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=20.99 E-value=6.2e+02 Score=25.11 Aligned_cols=140 Identities=16% Similarity=0.114 Sum_probs=85.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (623)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (623)
.+.+-|.++. .+.|++--...|..-.+.+...|++++|.++--... .|+-.+..|.+.+-.+=..-|+..--+..|
T Consensus 343 ~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP-~giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAP-KGILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSG-GGSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCc-cccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 5555554443 455666666677777888888899998888765544 345567777766655555567777777888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 006981 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (623)
Q Consensus 186 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 260 (623)
..+.+.| +.+..----+++.-...|+.+-..+.+.+= .+..+...- -++ +..+...|..+|.+.
T Consensus 419 ~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e~-----KL~~SEeLG-Dlv----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 419 GILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKED-----KLECSEELG-DLV----KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHT-----CSCCCHHHH-HHH----HHHCSHHHHHHHHHH
T ss_pred HHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhcC-----CccccHHhH-hhh----hhcCHHHHHHHHHHc
Confidence 8777776 455544445666666667766666655442 233332221 122 333555666666554
No 309
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.57 E-value=1.5e+02 Score=22.95 Aligned_cols=42 Identities=10% Similarity=-0.124 Sum_probs=29.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 396 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
+|+.+....+.|+...-..-+..+...++++.|.+++-.+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455556656666655545555667788999999999987765
No 310
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=20.36 E-value=8.7e+02 Score=26.57 Aligned_cols=169 Identities=11% Similarity=-0.041 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHH
Q 006981 161 NVHTYGALIDGCAKAGQ---VAKAFGAYGIMRSK--NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235 (623)
Q Consensus 161 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 235 (623)
+...-..++...|+.|. .+.|.+.|+..... +.+.++..-..+...-.+.|..++-..+++.... ..+..
T Consensus 685 ~~~lr~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~-----~~~~~ 759 (909)
T 4fke_A 685 DQYSEINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQ-----AQLVN 759 (909)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHH-----CCSHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHc-----cCCHH
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH---HHhCCCCCCHHHHHHHHH
Q 006981 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD---MTKKGVIPDEVFLSALID 312 (623)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~---m~~~~~~p~~~~~~~li~ 312 (623)
--..++.+++...+.+...++++.....+..........+..........+.|.+.+.+ ............+..+|.
T Consensus 760 ek~~ll~aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~ 839 (909)
T 4fke_A 760 EADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQ 839 (909)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHTTCTTTSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHH
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC
Q 006981 313 FAGHAGKVEAAFEILQEAKNQG 334 (623)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~ 334 (623)
.....-.-++-.+-++...+..
T Consensus 840 ~~~~~~~t~~~~~~~~~f~~~~ 861 (909)
T 4fke_A 840 GVTRRFSSEFELQQLEQFKKNN 861 (909)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTC
T ss_pred HHHHhcCCHHHHHHHHHHHhhC
Done!