BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006983
         (623 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZJK|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
           Masp-2
          Length = 403

 Score = 33.5 bits (75), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 9/88 (10%)

Query: 279 TERMEYEVRIEDGKLIYKKSGTVLDSTKGPKD------TKWIFVLSTSKTLYVGQKIK-G 331
            E   Y +++ DGK + +  G    S+KG K          +   +T   +Y GQK K G
Sbjct: 113 CEETFYTMKVNDGKYVCEADG-FWTSSKGEKSLPVCEPVCGLSARTTGGQIYGGQKAKPG 171

Query: 332 NFQHSSFLAGGATLSAGRLVVDNGYLKA 359
           +F     + GG T +AG L+ DN  L A
Sbjct: 172 DFPWQVLILGGTT-AAGALLYDNWVLTA 198


>pdb|1Q3X|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-2
 pdb|1Q3X|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-2
          Length = 328

 Score = 32.7 bits (73), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 11/103 (10%)

Query: 264 PRSKLQQQCIKYLGPTERMEYEVRIEDGKLIYKKSGTVLDSTKGPKD------TKWIFVL 317
           P     +  I+Y    E   Y +++ DGK + +  G    S+KG K          +   
Sbjct: 25  PGVTTYKAVIQY--SCEETFYTMKVNDGKYVCEADG-FWTSSKGEKSLPVCEPVCGLSAR 81

Query: 318 STSKTLYVGQKIK-GNFQHSSFLAGGATLSAGRLVVDNGYLKA 359
           +T   +Y GQK K G+F     + GG T +AG L+ DN  L A
Sbjct: 82  TTGGRIYGGQKAKPGDFPWQVLILGGTT-AAGALLYDNWVLTA 123


>pdb|2Q7B|A Chain A, Crystal Structure Of Acetyltransferase (Np_689019.1) From
           Streptococcus Agalactiae 2603 At 2.00 A Resolution
          Length = 181

 Score = 29.3 bits (64), Expect = 6.3,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 2/93 (2%)

Query: 28  SISLTEAANERSVLRKLSVNGRESNSKPTALRKKMIERLLSFERRALESKFSFKTPSAEM 87
           SI+L    ++ +VL+K     +   + P  L +K+ ER   F R +  ++    TP  E 
Sbjct: 85  SIALLRIDDKTAVLKKFFTYPKYRGN-PVRLGRKLFERFXLFARASKFTRIVLDTPEKEK 143

Query: 88  DNQVFGNTMSFKDAEGGDQSPGSYDFQDAKSHL 120
            +  F     FK     D+    Y F D  S +
Sbjct: 144 RSHFFYENQGFKQIT-RDELDVDYIFPDRDSRI 175


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.130    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,473,323
Number of Sequences: 62578
Number of extensions: 692863
Number of successful extensions: 1296
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1296
Number of HSP's gapped (non-prelim): 12
length of query: 623
length of database: 14,973,337
effective HSP length: 105
effective length of query: 518
effective length of database: 8,402,647
effective search space: 4352571146
effective search space used: 4352571146
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)