Query 006983
Match_columns 623
No_of_seqs 170 out of 187
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 14:06:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006983.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006983hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l53_B CAM, voltage-gated sodi 95.9 0.0048 1.7E-07 44.5 2.9 24 127-150 4-27 (31)
2 2kxw_B Sodium channel protein 95.8 0.0058 2E-07 42.8 2.8 22 127-148 4-25 (27)
3 2ix7_C Myosin-5A; contractIle 92.4 0.076 2.6E-06 41.1 2.8 38 126-163 2-41 (58)
4 1n2d_C IQ2 and IQ3 motifs from 91.2 0.11 3.9E-06 38.6 2.6 19 129-147 28-46 (48)
5 4dck_A Sodium channel protein 85.9 0.33 1.1E-05 46.2 2.4 24 127-150 128-151 (168)
6 2ix7_C Myosin-5A; contractIle 81.5 0.79 2.7E-05 35.3 2.5 22 129-150 28-49 (58)
7 1n2d_C IQ2 and IQ3 motifs from 78.9 1.2 4E-05 33.0 2.6 22 129-150 3-24 (48)
8 3dve_B Voltage-dependent N-typ 60.8 2.8 9.5E-05 28.7 0.9 17 130-146 6-22 (23)
9 3dvk_B Voltage-dependent R-typ 58.7 4.8 0.00016 27.5 1.8 17 130-146 7-23 (23)
10 3bxl_B CAM, voltage-dependent 57.6 5.4 0.00018 28.0 2.0 18 131-148 4-21 (26)
11 2dfs_A Myosin-5A; myosin-V, in 51.1 7.1 0.00024 45.9 2.9 21 129-149 791-811 (1080)
12 1xd5_A Gastrodianin-1, antifun 50.5 1.1E+02 0.0039 25.6 9.8 75 282-360 19-96 (112)
13 1kk8_A Myosin heavy chain, str 49.6 9.3 0.00032 43.9 3.4 35 128-162 778-817 (837)
14 3q7m_A Lipoprotein YFGL, BAMB; 47.9 26 0.00088 33.5 5.7 57 311-367 277-340 (376)
15 3ohg_A Uncharacterized protein 42.6 27 0.00093 35.3 5.2 63 281-357 109-173 (285)
16 3mez_A Mannose-specific lectin 40.4 1.3E+02 0.0045 25.5 8.5 45 282-328 20-67 (111)
17 2l60_A Peptide YY; GPCR ligand 40.0 22 0.00075 27.3 3.0 29 198-227 12-41 (41)
18 3no2_A Uncharacterized protein 36.7 68 0.0023 30.4 6.7 25 343-367 171-198 (276)
19 1f8p_A Neuropeptide Y (PNPY); 36.7 11 0.00039 28.2 1.0 28 199-227 9-37 (37)
20 2bl0_A Major plasmodial myosin 36.6 29 0.00098 27.2 3.4 19 129-147 30-48 (63)
21 3q7m_A Lipoprotein YFGL, BAMB; 35.4 45 0.0015 31.8 5.2 55 313-367 145-210 (376)
22 1wdc_A Scallop myosin; calcium 33.7 34 0.0012 26.7 3.4 17 131-147 34-50 (64)
23 3g43_E Voltage-dependent L-typ 33.2 17 0.00057 31.3 1.6 20 128-147 62-81 (81)
24 1kk8_A Myosin heavy chain, str 33.1 21 0.0007 41.2 2.9 26 129-163 805-830 (837)
25 3m7h_A Putidacin L1; monocot m 32.8 1.7E+02 0.0058 28.8 9.0 85 283-371 165-256 (276)
26 1w7j_A Myosin VA; motor protei 32.8 18 0.0006 41.5 2.3 21 128-148 767-787 (795)
27 3gn4_A Myosin-VI; unconvention 32.5 23 0.00078 33.3 2.6 21 128-148 44-64 (148)
28 2be1_A Serine/threonine-protei 31.3 59 0.002 33.3 5.6 83 284-366 23-132 (339)
29 4h3o_A Lectin; cadmium, plant 29.1 2.3E+02 0.0077 23.9 8.1 46 283-328 20-68 (105)
30 2dfs_A Myosin-5A; myosin-V, in 28.2 34 0.0012 40.3 3.6 22 129-150 839-860 (1080)
31 3a0c_A Mannose/sialic acid-bin 27.1 2.1E+02 0.0072 24.1 7.5 59 283-342 21-81 (110)
32 2dpf_A Curculin; sweet taste, 25.9 2.2E+02 0.0076 24.0 7.5 59 282-342 20-81 (115)
33 3dzw_A Agglutinin; lectin, man 24.7 2.7E+02 0.0091 23.3 7.7 75 282-359 19-96 (109)
34 3mez_B Mannose-specific lectin 23.5 2.9E+02 0.01 23.3 7.8 47 282-328 24-74 (113)
35 1qbf_A Peptide YY, PYY; PP-fol 23.2 11 0.00039 28.3 -1.0 28 199-227 9-37 (37)
36 2bf9_A Pancreatic hormone; tur 23.1 70 0.0024 23.9 3.2 27 199-226 9-36 (36)
37 3sao_A Extracellular fatty aci 21.4 1.8E+02 0.006 25.5 6.2 37 359-395 110-146 (160)
38 1yiq_A Quinohemoprotein alcoho 21.0 1.8E+02 0.0061 31.7 7.3 96 271-366 70-194 (689)
39 1bba_A Bovine pancreatic polyp 20.8 76 0.0026 23.7 3.0 27 199-226 9-36 (36)
40 1b2p_A Protein (lectin); manno 20.8 1.7E+02 0.0057 25.2 5.8 43 283-325 63-107 (119)
41 2dpf_A Curculin; sweet taste, 20.5 1.7E+02 0.0058 24.7 5.7 43 284-326 53-98 (115)
No 1
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=95.90 E-value=0.0048 Score=44.53 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccC
Q 006983 127 QRYQAALRLQKVYKSFRTRRRLAD 150 (623)
Q Consensus 127 ~~~~AA~~iQk~Yr~yRtRR~Lad 150 (623)
+.+.||++||+.||+|+-||.+..
T Consensus 4 ~Ee~aA~vIQrA~R~yl~rr~~~~ 27 (31)
T 2l53_B 4 SEEVSAMVIQRAFRRHLLQRSLKH 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 346799999999999999998764
No 2
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=95.76 E-value=0.0058 Score=42.81 Aligned_cols=22 Identities=18% Similarity=0.487 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhhc
Q 006983 127 QRYQAALRLQKVYKSFRTRRRL 148 (623)
Q Consensus 127 ~~~~AA~~iQk~Yr~yRtRR~L 148 (623)
..+.||++||+.||+|..||.+
T Consensus 4 ~Ee~aA~vIQrA~R~yl~~~~~ 25 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRYLLKQKV 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3567999999999999999865
No 3
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=92.37 E-value=0.076 Score=41.08 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHHhhhhhhhhhhccCc--chhHhHHHHHHh
Q 006983 126 NQRYQAALRLQKVYKSFRTRRRLADC--AVLAEQRWWKVL 163 (623)
Q Consensus 126 ~~~~~AA~~iQk~Yr~yRtRR~Lad~--~v~~e~rWw~al 163 (623)
+..+.||++||+.||||..|+..... +++.=+.||...
T Consensus 2 ~~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~ 41 (58)
T 2ix7_C 2 DKLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGY 41 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999976542 233345555543
No 4
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=91.24 E-value=0.11 Score=38.58 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=15.5
Q ss_pred HHHHHHHHHhhhhhhhhhh
Q 006983 129 YQAALRLQKVYKSFRTRRR 147 (623)
Q Consensus 129 ~~AA~~iQk~Yr~yRtRR~ 147 (623)
..||++||+.||||..|+.
T Consensus 28 ~~aai~IQ~~~Rg~~~Rk~ 46 (48)
T 1n2d_C 28 VNCATLLQAAYRGHSIRAN 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHh
Confidence 3488899999999988875
No 5
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=85.91 E-value=0.33 Score=46.23 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccC
Q 006983 127 QRYQAALRLQKVYKSFRTRRRLAD 150 (623)
Q Consensus 127 ~~~~AA~~iQk~Yr~yRtRR~Lad 150 (623)
+...||+.||+.||.|+-||++..
T Consensus 128 ~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 128 HEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccc
Confidence 355699999999999999887543
No 6
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=81.53 E-value=0.79 Score=35.32 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhhhhhhhhhccC
Q 006983 129 YQAALRLQKVYKSFRTRRRLAD 150 (623)
Q Consensus 129 ~~AA~~iQk~Yr~yRtRR~Lad 150 (623)
..||++||..||||..|+.+..
T Consensus 28 r~aai~IQ~~~Rg~~aR~~~~~ 49 (58)
T 2ix7_C 28 QRAAITVQRYVRGYQARCYAKF 49 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999998643
No 7
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=78.89 E-value=1.2 Score=33.01 Aligned_cols=22 Identities=41% Similarity=0.422 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhhhhhhhhhccC
Q 006983 129 YQAALRLQKVYKSFRTRRRLAD 150 (623)
Q Consensus 129 ~~AA~~iQk~Yr~yRtRR~Lad 150 (623)
..||+.||+.+|||-.|+....
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~ 24 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVND 24 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999998654
No 8
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=60.81 E-value=2.8 Score=28.67 Aligned_cols=17 Identities=41% Similarity=0.472 Sum_probs=15.4
Q ss_pred HHHHHHHHhhhhhhhhh
Q 006983 130 QAALRLQKVYKSFRTRR 146 (623)
Q Consensus 130 ~AA~~iQk~Yr~yRtRR 146 (623)
=||..||..||.++.||
T Consensus 6 YAallI~d~~r~~k~~~ 22 (23)
T 3dve_B 6 YAALMIFDFYKQNKTSR 22 (26)
T ss_dssp HHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 38999999999999887
No 9
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=58.74 E-value=4.8 Score=27.51 Aligned_cols=17 Identities=24% Similarity=0.430 Sum_probs=15.1
Q ss_pred HHHHHHHHhhhhhhhhh...
Q 006983 130 QAALRLQKVYKSFRTRR... 146 (623)
Q Consensus 130 ~AA~~iQk~Yr~yRtRR... 146 (623)
=||..||..||.+|.|+
T Consensus 7 YA~llI~d~~r~~k~r~... 23 (23)
T 3dvk_B 7 YAAMMIMDYYKQSKVKKxxx 26 (26)
T ss_dssp HHHHHHHHHHHHHHHTC...
T ss_pred HHHHHHHHHHHHHhccC...
Confidence 38999999999999875
No 10
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=57.59 E-value=5.4 Score=27.96 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=16.7
Q ss_pred HHHHHHHhhhhhhhhhhc
Q 006983 131 AALRLQKVYKSFRTRRRL 148 (623)
Q Consensus 131 AA~~iQk~Yr~yRtRR~L 148 (623)
||..||..||.++.||+-
T Consensus 4 Aa~mI~e~yrq~K~~r~q 21 (26)
T 3bxl_B 4 AAMMIMDYYKQSKVKKQR 21 (26)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 899999999999999973
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=51.12 E-value=7.1 Score=45.92 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhhhhhhhhhcc
Q 006983 129 YQAALRLQKVYKSFRTRRRLA 149 (623)
Q Consensus 129 ~~AA~~iQk~Yr~yRtRR~La 149 (623)
..||+.||+.||+|..|+...
T Consensus 791 r~aai~IQ~~~Rg~~aR~~~~ 811 (1080)
T 2dfs_A 791 RRAAITIQRYVRGHQARCYAT 811 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 468899999999999887654
No 12
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A
Probab=50.51 E-value=1.1e+02 Score=25.65 Aligned_cols=75 Identities=11% Similarity=0.060 Sum_probs=44.3
Q ss_pred cceEEEEe-CCeEEEccCCceeeCCCCC-CCCeEEEEEeCCCceEEeeccCCCccccccCCCCcccceeeEEEe-cCeEE
Q 006983 282 MEYEVRIE-DGKLIYKKSGTVLDSTKGP-KDTKWIFVLSTSKTLYVGQKIKGNFQHSSFLAGGATLSAGRLVVD-NGYLK 358 (623)
Q Consensus 282 e~YeViIe-dGrL~yk~sGelvDTt~~~-k~~kWIFVmDtsg~LYVG~KkkG~FQHSSFLaGg~V~AAG~I~Vk-nG~Ik 358 (623)
..|.+.+. ||.|+.-..+.+|..+... .......+|..+|+|++-. .+..-=+||..++.... .+++. ||.|.
T Consensus 19 ~~~~L~~~~dgnlvl~~~~~~vW~sn~~~~~~~~~l~l~~~GNLvl~d--~~~~~W~S~~~~~~g~~--~l~l~~dGnlv 94 (112)
T 1xd5_A 19 GGYLFIIQNDCNLVLYDNNRAVWASGTNGKASGCVLKMQNDGNLVIYS--GSRAIWASNTNRQNGNY--YLILQRDRNVV 94 (112)
T ss_dssp TTEEEEECTTSCEEEEETTEEEEECCCTTSCSSEEEEECTTSCEEEEE--TTEEEEECCCCCSCCCC--EEEECTTSCEE
T ss_pred CCEEEEEcCCCcEEEEECCEEEEeCCCcCCCCCEEEEEeCCCCEEEEc--CCEEEEECCccCCCCCE--EEEEeCCCcEE
Confidence 35777775 7877543336666544322 2233567888999999976 45566678866543211 34444 67655
Q ss_pred Ee
Q 006983 359 AI 360 (623)
Q Consensus 359 ~I 360 (623)
-.
T Consensus 95 l~ 96 (112)
T 1xd5_A 95 IY 96 (112)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 13
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=49.61 E-value=9.3 Score=43.94 Aligned_cols=35 Identities=11% Similarity=0.050 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhhhhhhhhhccCc-----chhHhHHHHHH
Q 006983 128 RYQAALRLQKVYKSFRTRRRLADC-----AVLAEQRWWKV 162 (623)
Q Consensus 128 ~~~AA~~iQk~Yr~yRtRR~Lad~-----~v~~e~rWw~a 162 (623)
...+|++||+++|||..||+..-. ++..=+++|.+
T Consensus 778 l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~ 817 (837)
T 1kk8_A 778 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRK 817 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345799999999999999987643 44445666654
No 14
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=47.92 E-value=26 Score=33.48 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=39.0
Q ss_pred CeEEEEEeCCCceEEeeccCCCcccccc-----CCCCcccceeeEEEe--cCeEEEecCCCCCC
Q 006983 311 TKWIFVLSTSKTLYVGQKIKGNFQHSSF-----LAGGATLSAGRLVVD--NGYLKAIWPHSGHY 367 (623)
Q Consensus 311 ~kWIFVmDtsg~LYVG~KkkG~FQHSSF-----LaGg~V~AAG~I~Vk--nG~Ik~Isp~SGHY 367 (623)
+..|||.+.+|.||+=....|......- ....++++-|.|.+- +|.|..+++.+|..
T Consensus 277 ~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 277 GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRF 340 (376)
T ss_dssp TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcE
Confidence 3458888888888887766676543221 123456666777776 68999999988863
No 15
>3ohg_A Uncharacterized protein from DUF2233 family; structural genomics, unknown function, joint center for STRU genomics, JCSG; HET: MSE; 1.80A {Bacteroides ovatus}
Probab=42.63 E-value=27 Score=35.32 Aligned_cols=63 Identities=19% Similarity=0.126 Sum_probs=35.5
Q ss_pred hcceEEEEeCCeEEEccCCceeeCCCCCCCCeEEEEEeCCCceEEeeccCCCccccccCC-C-CcccceeeEEEecCeE
Q 006983 281 RMEYEVRIEDGKLIYKKSGTVLDSTKGPKDTKWIFVLSTSKTLYVGQKIKGNFQHSSFLA-G-GATLSAGRLVVDNGYL 357 (623)
Q Consensus 281 Re~YeViIedGrL~yk~sGelvDTt~~~k~~kWIFVmDtsg~LYVG~KkkG~FQHSSFLa-G-g~V~AAG~I~VknG~I 357 (623)
+...=++|.||++++...+ . ....+|.++.+|+++|+.... ++ .+. + ..++.+|-+.|+||++
T Consensus 109 ~~P~G~~I~nG~~i~~~~~-----~----~~~~~f~i~~dG~~~I~~~~~--~~---~~~~~~~~av~~gp~Lv~nG~~ 173 (285)
T 3ohg_A 109 RRVMGLFYKDGVCINSQYF-----E----GHDEVLYQLKNGETYVGQADE--AL---AHEANLLHALGGYGLLVKDGVV 173 (285)
T ss_dssp TEESSCEEETTEEEECCCC-----T----TCCEEEEEETTSCEEEEEHHH--HH---TTGGGEEEEEEESCEEEETTEE
T ss_pred CceeEEEEECCEEEecCCC-----C----CcceEEEEeeCCeEEEEecch--hh---hhhcCccEEEEcchhheECCeE
Confidence 3444455566666543221 1 133589999999999986321 11 000 0 1255667777788877
No 16
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=40.44 E-value=1.3e+02 Score=25.54 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=28.5
Q ss_pred cceEEEEe-CCeEE-EccCCceeeCCCC-CCCCeEEEEEeCCCceEEeec
Q 006983 282 MEYEVRIE-DGKLI-YKKSGTVLDSTKG-PKDTKWIFVLSTSKTLYVGQK 328 (623)
Q Consensus 282 e~YeViIe-dGrL~-yk~sGelvDTt~~-~k~~kWIFVmDtsg~LYVG~K 328 (623)
-.|.+.+. ||.|+ |..++ +..+.. .+......+|..+|+|++-..
T Consensus 20 g~~~L~~q~dGnLvl~~~~~--vW~snt~~~~~~~~l~l~~dGNLVl~~~ 67 (111)
T 3mez_A 20 ESAAFVMQGDCNLVLYNEAG--GFQSNTHGRGVDCTLRLNNRGQLEIHSA 67 (111)
T ss_dssp TTEEEEECTTSCEEEECSSC--CEECCCTTSCSSCEEEECTTSCEEEECS
T ss_pred CCEEEEEccCCeEEEECCCC--EEECCcccCCcCEEEEEcCCCcEEEEeC
Confidence 45788885 88875 55555 543321 122335678899999999654
No 17
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=40.03 E-value=22 Score=27.27 Aligned_cols=29 Identities=38% Similarity=0.535 Sum_probs=24.1
Q ss_pred hcCCCChhHHHHHH-HHHHHHHhcCCccccc
Q 006983 198 VGKGLSKSEKARKL-ALQHWLEAIDPRHRYG 227 (623)
Q Consensus 198 vGkglskd~kAqkL-~lQhWLEaIDprHRYG 227 (623)
-|.+.|.++-||=+ +|+|+|-+|- |+|||
T Consensus 12 Pg~~aspEela~Y~~~Lr~YinlvT-R~RyG 41 (41)
T 2l60_A 12 ELKKLSPEELNRYYASLRHYLNLVT-RQRYX 41 (41)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHHHT-TTCC-
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhc-ccccC
Confidence 47888999999875 7999999985 89998
No 18
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=36.73 E-value=68 Score=30.38 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=14.2
Q ss_pred cccceeeEEEe---cCeEEEecCCCCCC
Q 006983 343 ATLSAGRLVVD---NGYLKAIWPHSGHY 367 (623)
Q Consensus 343 ~V~AAG~I~Vk---nG~Ik~Isp~SGHY 367 (623)
+++..|.+.|- +|.|..+.+.+|..
T Consensus 171 ~~~~~g~~~v~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 171 AFLDNGDCLVACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp EECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred eEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence 34445554443 45677777766653
No 19
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=36.68 E-value=11 Score=28.22 Aligned_cols=28 Identities=36% Similarity=0.650 Sum_probs=22.2
Q ss_pred cCCCChhHHHHHH-HHHHHHHhcCCccccc
Q 006983 199 GKGLSKSEKARKL-ALQHWLEAIDPRHRYG 227 (623)
Q Consensus 199 Gkglskd~kAqkL-~lQhWLEaIDprHRYG 227 (623)
|.+.+.++-||=+ +|+|+|-+|- |+|||
T Consensus 9 g~~a~pEela~Y~~~Lr~YinlvT-RqRyG 37 (37)
T 1f8p_A 9 GEDAPAEDLARYYSALRHYINLIT-RQRYX 37 (37)
T ss_dssp CSSCTTTTHHHHHHHHHHHHHHHH-HHHC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhc-ccccC
Confidence 6677888888875 7999999885 88998
No 20
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=36.58 E-value=29 Score=27.19 Aligned_cols=19 Identities=11% Similarity=0.090 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhhhhhhhhh
Q 006983 129 YQAALRLQKVYKSFRTRRR 147 (623)
Q Consensus 129 ~~AA~~iQk~Yr~yRtRR~ 147 (623)
..|+..||++.|+|=.+|+
T Consensus 30 ~~A~~iIQrn~R~~~~lr~ 48 (63)
T 2bl0_A 30 SVSARIIQDNIRAYLEFKN 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 3466677777777776665
No 21
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=35.36 E-value=45 Score=31.82 Aligned_cols=55 Identities=20% Similarity=0.308 Sum_probs=35.7
Q ss_pred EEEEEeCCCceEEeeccCCCccccccC---------CCCcccceeeEEEe--cCeEEEecCCCCCC
Q 006983 313 WIFVLSTSKTLYVGQKIKGNFQHSSFL---------AGGATLSAGRLVVD--NGYLKAIWPHSGHY 367 (623)
Q Consensus 313 WIFVmDtsg~LYVG~KkkG~FQHSSFL---------aGg~V~AAG~I~Vk--nG~Ik~Isp~SGHY 367 (623)
-+||.+.+|.||+=....|......-+ ...+++.-|.|.+- +|.|..+.+.+|..
T Consensus 145 ~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~ 210 (376)
T 3q7m_A 145 LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQM 210 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTCCE
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCcE
Confidence 577777778888776666654432211 24455566776664 68899998888864
No 22
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=33.69 E-value=34 Score=26.75 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=8.3
Q ss_pred HHHHHHHhhhhhhhhhh
Q 006983 131 AALRLQKVYKSFRTRRR 147 (623)
Q Consensus 131 AA~~iQk~Yr~yRtRR~ 147 (623)
|+..||++.|+|=.+|+
T Consensus 34 A~~iIQrn~R~~~~l~~ 50 (64)
T 1wdc_A 34 GLSVIQRNIRKWLVLRN 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 44455555555554443
No 23
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C; calmodulin-bound, coiled coil, acetylation, methylation, phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB: 3oxq_E
Probab=33.23 E-value=17 Score=31.34 Aligned_cols=20 Identities=20% Similarity=0.647 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhhhhhhhhhh
Q 006983 128 RYQAALRLQKVYKSFRTRRR 147 (623)
Q Consensus 128 ~~~AA~~iQk~Yr~yRtRR~ 147 (623)
+-=||..||..||.||.|++
T Consensus 62 KiYA~llI~d~~r~~k~r~~ 81 (81)
T 3g43_E 62 KFYATFLIQEYFRKFKKREQ 81 (81)
T ss_dssp CHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHhccC
Confidence 34499999999999999875
No 24
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=33.07 E-value=21 Score=41.17 Aligned_cols=26 Identities=19% Similarity=0.463 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhhhhhhhhhccCcchhHhHHHHHHh
Q 006983 129 YQAALRLQKVYKSFRTRRRLADCAVLAEQRWWKVL 163 (623)
Q Consensus 129 ~~AA~~iQk~Yr~yRtRR~Lad~~v~~e~rWw~al 163 (623)
..||++||+.||+|..||+ --||+.+
T Consensus 805 r~a~~~IQ~~~R~~~~~r~---------~~w~~l~ 830 (837)
T 1kk8_A 805 RIGLSVIQRNIRKWLVLRN---------WQWWKLY 830 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHT---------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcc---------hHHHHHH
Confidence 4689999999999999987 5688876
No 25
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A*
Probab=32.79 E-value=1.7e+02 Score=28.84 Aligned_cols=85 Identities=19% Similarity=0.163 Sum_probs=46.0
Q ss_pred ceEEEEe-CCeEE-EccCCceeeCCCCCCCCeEEEEEeCCCceEEeeccCCCccccccCCCCcccceeeEEEe-cCeEEE
Q 006983 283 EYEVRIE-DGKLI-YKKSGTVLDSTKGPKDTKWIFVLSTSKTLYVGQKIKGNFQHSSFLAGGATLSAGRLVVD-NGYLKA 359 (623)
Q Consensus 283 ~YeViIe-dGrL~-yk~sGelvDTt~~~k~~kWIFVmDtsg~LYVG~KkkG~FQHSSFLaGg~V~AAG~I~Vk-nG~Ik~ 359 (623)
.|.+.++ +|.++ |..++.++..++....+....+|+.+|+|++-... +..--+|+..|... =++++. ||.|+-
T Consensus 165 ~fsl~l~~dGnlvLy~~~~~~yW~Sgt~~~~~~~l~l~~dGnLvl~d~~-~~~vWsS~t~~~~~---~rl~Ld~dGnLvl 240 (276)
T 3m7h_A 165 ASKLVFQGDGNLVAYGPNGAATWNAGTQGKGAVRAVFQGDGNLVVYGAG-NAVLWHSHTGGHAS---AVLRLQANGSIAI 240 (276)
T ss_dssp TEEEEECTTSCEEEECTTSSEEEECCCTTTTCCEEEECTTSCEEEECTT-SCEEEECSCTTCTT---CEEEECTTSCEEE
T ss_pred eEEEeecCCceEEEEeCCCeEEEECCCCCCccEEEEEcCCCeEEEEeCC-CcEEEEecCCCCCC---EEEEEcCCccEEE
Confidence 5666665 56543 43334555444322223356789999999986543 23334555554321 245555 677764
Q ss_pred ecC----CCCCCCCCH
Q 006983 360 IWP----HSGHYLPTE 371 (623)
Q Consensus 360 Isp----~SGHYRPT~ 371 (623)
-.. .|..|+|+.
T Consensus 241 y~~~~~Wqsf~~~P~~ 256 (276)
T 3m7h_A 241 LDEKPVWARFGFQPTY 256 (276)
T ss_dssp EEEEEEEESSSCCTTS
T ss_pred EcCCCeEEccCccCCc
Confidence 432 355666763
No 26
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=32.75 E-value=18 Score=41.46 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhc
Q 006983 128 RYQAALRLQKVYKSFRTRRRL 148 (623)
Q Consensus 128 ~~~AA~~iQk~Yr~yRtRR~L 148 (623)
..++|++||+++|||..||+.
T Consensus 767 l~~~~~~iQ~~~Rg~l~R~~~ 787 (795)
T 1w7j_A 767 LRAACIRIQKTIRGWLMRKKY 787 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999875
No 27
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=32.49 E-value=23 Score=33.33 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhc
Q 006983 128 RYQAALRLQKVYKSFRTRRRL 148 (623)
Q Consensus 128 ~~~AA~~iQk~Yr~yRtRR~L 148 (623)
+.+|+++||++-|+|-.||.-
T Consensus 44 R~~~~i~iQktvR~~L~rkkh 64 (148)
T 3gn4_A 44 RAEACIKMQKTIRMWLCKRRH 64 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 467899999999999999873
No 28
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=31.34 E-value=59 Score=33.30 Aligned_cols=83 Identities=11% Similarity=0.171 Sum_probs=43.4
Q ss_pred eEEEEeCCeEEEccCCc----eeeCCCCC-CCCeEEEEEe--CCCceEEeeccCCC---------ccccc-cC-CCCccc
Q 006983 284 YEVRIEDGKLIYKKSGT----VLDSTKGP-KDTKWIFVLS--TSKTLYVGQKIKGN---------FQHSS-FL-AGGATL 345 (623)
Q Consensus 284 YeViIedGrL~yk~sGe----lvDTt~~~-k~~kWIFVmD--tsg~LYVG~KkkG~---------FQHSS-FL-aGg~V~ 345 (623)
|-+-.++|+++|..... ++.+.... ..+..+||+. .+|+||+-....|. .-++| +. .|.+|+
T Consensus 23 ~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv 102 (339)
T 2be1_A 23 HAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVV 102 (339)
T ss_dssp EEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC---
T ss_pred EEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceeccccccCCCcee
Confidence 33333467777775432 22222110 1133577774 68999996643332 11222 33 466666
Q ss_pred -------ceeeEEEe--cCeEEEecCCCCC
Q 006983 346 -------SAGRLVVD--NGYLKAIWPHSGH 366 (623)
Q Consensus 346 -------AAG~I~Vk--nG~Ik~Isp~SGH 366 (623)
.-|.+.+- +|.|.+|...+|-
T Consensus 103 ~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~ 132 (339)
T 2be1_A 103 NDSGKIVEDEKVYTGSMRTIMYTINMLNGE 132 (339)
T ss_dssp -------CCEEEEECEEEEEEEEEETTTCC
T ss_pred ecccccccCCEEEEEecCCEEEEEECCCCc
Confidence 66666543 7888888887773
No 29
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=29.12 E-value=2.3e+02 Score=23.86 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=30.5
Q ss_pred ceEEEEe-CCeEEEccCCceeeCCCC--CCCCeEEEEEeCCCceEEeec
Q 006983 283 EYEVRIE-DGKLIYKKSGTVLDSTKG--PKDTKWIFVLSTSKTLYVGQK 328 (623)
Q Consensus 283 ~YeViIe-dGrL~yk~sGelvDTt~~--~k~~kWIFVmDtsg~LYVG~K 328 (623)
.|.+++. ||.|+.-..+.+|..+.. +.....-++|..+|+|.+-..
T Consensus 20 ~y~l~~q~DgNLvly~~~~~vW~ant~~~~~~~~~L~l~~dGnLvL~d~ 68 (105)
T 4h3o_A 20 PYHFIMQDDCNLVLYDHSTSTWASNTEIGGKSGCSAVLQSDGNFVVYDS 68 (105)
T ss_dssp TEEEEECTTSCEEEEETTEEEEECCCCCTTCCSCEEEECTTSCEEEECT
T ss_pred CEEEEECCCCeEEEEECCEEEEEecCCCCCCccEEEEEeCCccEEEECC
Confidence 4888885 888865455677654432 222334678899999988654
No 30
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=28.17 E-value=34 Score=40.34 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhhhhhhhhhccC
Q 006983 129 YQAALRLQKVYKSFRTRRRLAD 150 (623)
Q Consensus 129 ~~AA~~iQk~Yr~yRtRR~Lad 150 (623)
..||+.||..||||..||++..
T Consensus 839 r~aai~IQs~~Rg~laRr~~~~ 860 (1080)
T 2dfs_A 839 RDATIALQALLRGYLVRNKYQM 860 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888888877653
No 31
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=27.11 E-value=2.1e+02 Score=24.06 Aligned_cols=59 Identities=12% Similarity=0.171 Sum_probs=36.8
Q ss_pred ceEEEEe-CCeEEEccCCceeeCCCCC-CCCeEEEEEeCCCceEEeeccCCCccccccCCCC
Q 006983 283 EYEVRIE-DGKLIYKKSGTVLDSTKGP-KDTKWIFVLSTSKTLYVGQKIKGNFQHSSFLAGG 342 (623)
Q Consensus 283 ~YeViIe-dGrL~yk~sGelvDTt~~~-k~~kWIFVmDtsg~LYVG~KkkG~FQHSSFLaGg 342 (623)
.|.+.+. ||.|+.-.++.+|..+... .......+|..+|+|.+-.. .|..-=+||..+.
T Consensus 21 ~~~l~~~~dGnlvl~~~~~~vW~sn~~~~~~~~~l~l~~dGNLVl~~~-~~~~~W~S~t~~~ 81 (110)
T 3a0c_A 21 SYRLIMQGDCNFVLYDSGKPVWASNTGGLGSGCRLTLHNNGNLVIYDQ-SNRVIWQTKTNGK 81 (110)
T ss_dssp TEEEEECTTSCEEEEETTEEEEECCCTTSCSSCEEEECTTSCEEEECT-TCCEEEECCCCCS
T ss_pred CEEEEEcCCCcEEEEECCEEEEECCCCCCCCcEEEEEeCCCCEEEECC-CCcEEEecCCCCC
Confidence 4667764 7877543356666544321 12235678888999999654 4555667887654
No 32
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A*
Probab=25.85 E-value=2.2e+02 Score=23.97 Aligned_cols=59 Identities=17% Similarity=0.233 Sum_probs=34.9
Q ss_pred cceEEEEe-CCeEE-EccCCceeeCCCCC-CCCeEEEEEeCCCceEEeeccCCCccccccCCCC
Q 006983 282 MEYEVRIE-DGKLI-YKKSGTVLDSTKGP-KDTKWIFVLSTSKTLYVGQKIKGNFQHSSFLAGG 342 (623)
Q Consensus 282 e~YeViIe-dGrL~-yk~sGelvDTt~~~-k~~kWIFVmDtsg~LYVG~KkkG~FQHSSFLaGg 342 (623)
..|.+.+. ||.|+ |. .+.++..+... +......+|..+|+|++-.. .|.+-=+||-.++
T Consensus 20 g~~~L~~~~dgnlvly~-~~~~vW~sn~~~~~~~~~l~l~~~GnLvl~d~-~~~~vW~S~~~~~ 81 (115)
T 2dpf_A 20 GAYTLTIQNKCNLVKYQ-NGRQIWASNTDRRGSGCRLTLLSDGNLVIYDH-NNNDVWGSACWGD 81 (115)
T ss_dssp TTEEEEECTTSCEEEEE-TTEEEEECSCTTSCSSCEEEECTTSCEEEECT-TCCEEEECCCCCS
T ss_pred CCEEEEEcCCCcEEEEe-CCEEEEeCCCCCCCCceEEEECCCCcEEEECC-CceEEEEcCCCCC
Confidence 35666664 77664 43 45565433211 12234677888999999763 3556666777644
No 33
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A*
Probab=24.67 E-value=2.7e+02 Score=23.31 Aligned_cols=75 Identities=15% Similarity=0.092 Sum_probs=40.4
Q ss_pred cceEEEEe-CCeEEEccCCceeeCCCCC-CCCeEEEEEeCCCceEEeeccCCCccccccCCCCcccceeeEEEe-cCeEE
Q 006983 282 MEYEVRIE-DGKLIYKKSGTVLDSTKGP-KDTKWIFVLSTSKTLYVGQKIKGNFQHSSFLAGGATLSAGRLVVD-NGYLK 358 (623)
Q Consensus 282 e~YeViIe-dGrL~yk~sGelvDTt~~~-k~~kWIFVmDtsg~LYVG~KkkG~FQHSSFLaGg~V~AAG~I~Vk-nG~Ik 358 (623)
-.|.+.+. ||.|+.-..+.++..+... .+.....+|..+|+|++-.. .|..-=+|-..+.... . .+++. ||.|.
T Consensus 19 g~~~L~~q~dGnLvly~~~~~vW~snt~~~~~~~~l~l~~dGNLvl~~~-~~~~~W~S~t~~~~~~-~-~~~L~ddGNlv 95 (109)
T 3dzw_A 19 GRYVFIMQEDCNLVLYDVDKPIWATNTGGLDRRCHLSMQSDGNLVVYSP-RNNPIWASNTGGENGN-Y-VCVLQKDRNVV 95 (109)
T ss_dssp TTEEEEECTTSCEEEEETTEEEEECCCTTSSSSCEEEECTTSCEEEECT-TSCEEEECCCCCSSSC-E-EEEECTTSCEE
T ss_pred CCEEEEEcCCCcEEEEeCCEEEEECCcccCCCCEEEEEeCCCCEEEECC-CCCEEEECCCCCCCCC-E-EEEEeCCCEEE
Confidence 45777775 7877533335666544321 12335788999999999653 2333334444433211 1 23343 67665
Q ss_pred E
Q 006983 359 A 359 (623)
Q Consensus 359 ~ 359 (623)
-
T Consensus 96 l 96 (109)
T 3dzw_A 96 I 96 (109)
T ss_dssp E
T ss_pred E
Confidence 3
No 34
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=23.53 E-value=2.9e+02 Score=23.33 Aligned_cols=47 Identities=15% Similarity=0.245 Sum_probs=30.4
Q ss_pred cceEEEEe-CCeEE-Ecc-CCceeeCCCCC-CCCeEEEEEeCCCceEEeec
Q 006983 282 MEYEVRIE-DGKLI-YKK-SGTVLDSTKGP-KDTKWIFVLSTSKTLYVGQK 328 (623)
Q Consensus 282 e~YeViIe-dGrL~-yk~-sGelvDTt~~~-k~~kWIFVmDtsg~LYVG~K 328 (623)
-.|.+.+. ||.|+ |.. .+..+..+... +......+|..+|+|++-..
T Consensus 24 g~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl~d~ 74 (113)
T 3mez_B 24 RDYSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDITDD 74 (113)
T ss_dssp TTEEEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEEECT
T ss_pred CCEEEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEEECC
Confidence 45788885 88885 554 36677554321 12335678899999999653
No 35
>1qbf_A Peptide YY, PYY; PP-fold, pancreatic hormone, , inhibitor/hormone complex; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ru5_A 1ruu_A 2rlk_A 2oop_A 2dez_A 2df0_A
Probab=23.24 E-value=11 Score=28.25 Aligned_cols=28 Identities=36% Similarity=0.653 Sum_probs=19.9
Q ss_pred cCCCChhHHHHHH-HHHHHHHhcCCccccc
Q 006983 199 GKGLSKSEKARKL-ALQHWLEAIDPRHRYG 227 (623)
Q Consensus 199 Gkglskd~kAqkL-~lQhWLEaIDprHRYG 227 (623)
|.+.+.++-||=+ +|+|+|-+|- |+|||
T Consensus 9 g~da~pEela~Y~~~Lr~YinlvT-R~RyG 37 (37)
T 1qbf_A 9 GEDASPEELSRYYASLRHYLNLVT-RQRYX 37 (37)
T ss_dssp CCSSSSSTTTTTTTGGGHHHHHTS-SSCC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhc-ccccC
Confidence 5556666666654 6899998885 88998
No 36
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=23.06 E-value=70 Score=23.93 Aligned_cols=27 Identities=30% Similarity=0.512 Sum_probs=22.3
Q ss_pred cCCCChhHHHHHH-HHHHHHHhcCCcccc
Q 006983 199 GKGLSKSEKARKL-ALQHWLEAIDPRHRY 226 (623)
Q Consensus 199 Gkglskd~kAqkL-~lQhWLEaIDprHRY 226 (623)
|.+.+.++-||-. +|+|+|-+|- |+||
T Consensus 9 G~dA~~Eela~Y~~~LrhYiNlvT-RqRy 36 (36)
T 2bf9_A 9 GDDAPVEDLIRFYNDLQQYLNVVT-RHRX 36 (36)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHT-TCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHh-ccCC
Confidence 6778889999864 8999999985 6776
No 37
>3sao_A Extracellular fatty acid-binding protein; beta-barrel, siderophore binding protein, transport protein; HET: NKN DBH; 1.80A {Gallus gallus} SCOP: b.60.1.1 PDB: 1jzu_A 2kt4_B* 2lbv_A*
Probab=21.41 E-value=1.8e+02 Score=25.52 Aligned_cols=37 Identities=19% Similarity=0.091 Sum_probs=29.5
Q ss_pred EecCCCCCCCCCHHHHHHHHHHHHHcCCCCCCeeeCC
Q 006983 359 AIWPHSGHYLPTEENFQAFMSFLREHNVDLTNVKKSP 395 (623)
Q Consensus 359 ~Isp~SGHYRPT~eNf~~Fl~~Lke~GVDLs~Vki~~ 395 (623)
.+|=+|-.=.++.+-+..|.+++++.|++.++|-+-+
T Consensus 110 ~~~llsR~~~~~~e~~~~f~~~~~~~G~~~~~i~~~~ 146 (160)
T 3sao_A 110 MMRLYSRSREVSPTAMAIFRKLARERNYTDEMVAVLP 146 (160)
T ss_dssp EEEEEESSSSCCHHHHHHHHHHHHTTTCCGGGEEECC
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHcCCCHHHEEECC
Confidence 3444455556788999999999999999999987754
No 38
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=20.96 E-value=1.8e+02 Score=31.70 Aligned_cols=96 Identities=20% Similarity=0.280 Sum_probs=55.9
Q ss_pred HhhhcCChhhhcceEEEEeCCeEEEccCCcee-eC---------CCCC-CCCeEEEEEeCCCceEEeeccCCCcc-----
Q 006983 271 QCIKYLGPTERMEYEVRIEDGKLIYKKSGTVL-DS---------TKGP-KDTKWIFVLSTSKTLYVGQKIKGNFQ----- 334 (623)
Q Consensus 271 qcVkYLspeERe~YeViIedGrL~yk~sGelv-DT---------t~~~-k~~kWIFVmDtsg~LYVG~KkkG~FQ----- 334 (623)
..+-|++-....-|-+-..+|+++|+.+...- .. ..++ -.+.-|||-+.+|.||+=..+.|...
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~ 149 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDT 149 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecC
Confidence 34456654333333333348999998653210 00 0001 02335888888899998765555432
Q ss_pred -----ccccCCCCcccceeeEEEe--------cCeEEEecCCCCC
Q 006983 335 -----HSSFLAGGATLSAGRLVVD--------NGYLKAIWPHSGH 366 (623)
Q Consensus 335 -----HSSFLaGg~V~AAG~I~Vk--------nG~Ik~Isp~SGH 366 (623)
+.....+.+++.-|.+.|- +|.|..++..+|-
T Consensus 150 ~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~ 194 (689)
T 1yiq_A 150 RADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGK 194 (689)
T ss_dssp CSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred cCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCc
Confidence 1123455677777887774 5789999988886
No 39
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=20.81 E-value=76 Score=23.74 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=22.3
Q ss_pred cCCCChhHHHHHH-HHHHHHHhcCCcccc
Q 006983 199 GKGLSKSEKARKL-ALQHWLEAIDPRHRY 226 (623)
Q Consensus 199 Gkglskd~kAqkL-~lQhWLEaIDprHRY 226 (623)
|.+.+.++-||-. +|+|+|-+|- |+||
T Consensus 9 G~dA~pEela~Y~~~Lr~YiNlvT-RqRy 36 (36)
T 1bba_A 9 GDNATPEQMAQYAAELRRYINMLT-RPRY 36 (36)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHHHC-CCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhh-cccC
Confidence 6778889988864 8999999985 6776
No 40
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1
Probab=20.79 E-value=1.7e+02 Score=25.24 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=0.0
Q ss_pred ceEEEEeCCeEE-EccCCcee-eCCCCCCCCeEEEEEeCCCceEE
Q 006983 283 EYEVRIEDGKLI-YKKSGTVL-DSTKGPKDTKWIFVLSTSKTLYV 325 (623)
Q Consensus 283 ~YeViIedGrL~-yk~sGelv-DTt~~~k~~kWIFVmDtsg~LYV 325 (623)
.+...-++|.|+ |..+|.++ .+...+..+.+.++|+.+|+|.+
T Consensus 63 ~~l~l~~dGNLVl~d~~~~~lW~S~~~~~~g~~~l~l~~~Gnlvl 107 (119)
T 1b2p_A 63 CRAVLQPDGVLVVITNENVTVWQSPVAGKAGHYVLVLQPDRNVVI 107 (119)
T ss_dssp CEEEECTTSCEEEECTTCCEEEECSCCCCSSCEEEEECTTSCEEE
T ss_pred eEEEEccCCEEEEEeCCCcEEEcCCCCCCCCCEEEEEECCCcEEE
No 41
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A*
Probab=20.54 E-value=1.7e+02 Score=24.73 Aligned_cols=43 Identities=16% Similarity=0.335 Sum_probs=27.9
Q ss_pred eEEEE-eCCeEE-EccCCceeeCCCC-CCCCeEEEEEeCCCceEEe
Q 006983 284 YEVRI-EDGKLI-YKKSGTVLDSTKG-PKDTKWIFVLSTSKTLYVG 326 (623)
Q Consensus 284 YeViI-edGrL~-yk~sGelvDTt~~-~k~~kWIFVmDtsg~LYVG 326 (623)
+.+.+ ++|.|+ |..+|.++..+.. +..+.+.++|+.+|+|.+-
T Consensus 53 ~~l~l~~~GnLvl~d~~~~~vW~S~~~~~~g~~~l~l~~dGnlvl~ 98 (115)
T 2dpf_A 53 CRLTLLSDGNLVIYDHNNNDVWGSACWGDNGKYALVLQKDGRFVIY 98 (115)
T ss_dssp CEEEECTTSCEEEECTTCCEEEECCCCCSSSCCEEEECTTSCEEEE
T ss_pred eEEEECCCCcEEEECCCceEEEEcCCCCCCCCEEEEEeCCCeEEEE
Confidence 34555 488885 5556777644432 2345678899999988774
Done!