Query 006984
Match_columns 623
No_of_seqs 97 out of 106
Neff 3.6
Searched_HMMs 46136
Date Thu Mar 28 17:17:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006984.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006984hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1003 Actin filament-coating 100.0 5.1E-34 1.1E-38 276.4 19.6 188 367-575 2-199 (205)
2 PF00261 Tropomyosin: Tropomyo 100.0 1.2E-28 2.6E-33 243.3 21.3 213 341-574 1-230 (237)
3 PF12718 Tropomyosin_1: Tropom 99.2 2.5E-10 5.4E-15 107.0 14.0 107 332-438 33-142 (143)
4 PF00261 Tropomyosin: Tropomyo 99.2 7.3E-10 1.6E-14 110.3 16.5 222 289-522 2-231 (237)
5 PRK02224 chromosome segregatio 99.0 5.7E-05 1.2E-09 86.8 48.5 44 229-272 262-305 (880)
6 PRK02224 chromosome segregatio 99.0 1.9E-05 4.2E-10 90.6 42.8 186 335-528 510-700 (880)
7 TIGR02169 SMC_prok_A chromosom 98.7 0.00013 2.8E-09 84.7 39.8 54 209-262 151-207 (1164)
8 TIGR02168 SMC_prok_B chromosom 98.7 4.2E-05 9E-10 88.2 33.7 55 501-559 964-1018(1179)
9 COG1196 Smc Chromosome segrega 98.7 3.3E-05 7.2E-10 92.4 33.4 76 507-582 947-1026(1163)
10 TIGR00606 rad50 rad50. This fa 98.7 0.00098 2.1E-08 81.0 44.8 69 107-182 598-666 (1311)
11 TIGR02169 SMC_prok_A chromosom 98.6 0.00042 9E-09 80.6 39.6 16 499-514 955-970 (1164)
12 TIGR02168 SMC_prok_B chromosom 98.6 0.00032 6.9E-09 81.1 37.2 57 498-554 968-1027(1179)
13 TIGR00606 rad50 rad50. This fa 98.4 0.018 3.9E-07 70.3 46.8 56 243-298 574-629 (1311)
14 KOG0161 Myosin class II heavy 98.4 0.015 3.2E-07 73.4 44.5 333 229-574 961-1327(1930)
15 KOG0161 Myosin class II heavy 98.3 0.0029 6.4E-08 79.3 38.0 100 461-567 1098-1208(1930)
16 COG1196 Smc Chromosome segrega 98.3 0.0053 1.2E-07 74.0 37.3 50 479-528 947-996 (1163)
17 PRK03918 chromosome segregatio 98.2 0.032 6.9E-07 64.4 45.8 35 459-493 548-582 (880)
18 KOG0971 Microtubule-associated 98.2 0.004 8.7E-08 73.0 31.6 275 297-573 219-557 (1243)
19 KOG4674 Uncharacterized conser 98.1 0.035 7.6E-07 69.5 39.9 293 226-560 655-984 (1822)
20 PRK04863 mukB cell division pr 98.0 0.015 3.2E-07 72.2 35.3 61 205-265 273-333 (1486)
21 PHA02562 46 endonuclease subun 98.0 0.012 2.6E-07 64.3 30.7 127 424-550 298-433 (562)
22 PF12718 Tropomyosin_1: Tropom 97.9 0.0008 1.7E-08 63.6 16.5 139 378-566 2-140 (143)
23 KOG0994 Extracellular matrix g 97.8 0.03 6.5E-07 67.4 31.2 254 258-565 1494-1748(1758)
24 KOG4674 Uncharacterized conser 97.8 0.24 5.1E-06 62.6 41.7 289 217-528 691-1030(1822)
25 PRK03918 chromosome segregatio 97.8 0.13 2.8E-06 59.5 47.7 8 74-81 134-141 (880)
26 KOG0976 Rho/Rac1-interacting s 97.8 0.033 7.2E-07 65.1 30.3 298 260-574 34-356 (1265)
27 KOG1003 Actin filament-coating 97.8 0.005 1.1E-07 61.7 21.1 183 333-519 3-196 (205)
28 PF05701 WEMBL: Weak chloropla 97.7 0.15 3.2E-06 57.2 36.1 329 229-572 59-424 (522)
29 PF07888 CALCOCO1: Calcium bin 97.6 0.23 5E-06 56.5 35.1 107 370-483 277-387 (546)
30 PF10174 Cast: RIM-binding pro 97.6 0.31 6.8E-06 57.4 42.2 87 333-419 335-421 (775)
31 PF07888 CALCOCO1: Calcium bin 97.5 0.28 6.2E-06 55.7 31.3 41 430-470 281-321 (546)
32 KOG0996 Structural maintenance 97.4 0.61 1.3E-05 56.9 36.7 315 245-581 287-619 (1293)
33 PRK01156 chromosome segregatio 97.4 0.51 1.1E-05 55.4 45.0 26 146-171 195-220 (895)
34 PRK04778 septation ring format 97.3 0.55 1.2E-05 53.1 36.4 128 333-466 255-385 (569)
35 PF10174 Cast: RIM-binding pro 97.2 0.88 1.9E-05 53.9 40.4 198 324-531 228-451 (775)
36 PF12128 DUF3584: Protein of u 97.1 1.3 2.8E-05 54.4 40.6 233 210-445 415-705 (1201)
37 PRK11637 AmiB activator; Provi 97.1 0.52 1.1E-05 51.2 27.4 93 305-408 43-135 (428)
38 KOG0971 Microtubule-associated 97.1 0.73 1.6E-05 55.1 29.7 299 229-562 235-553 (1243)
39 PF00038 Filament: Intermediat 97.0 0.56 1.2E-05 48.2 27.9 70 499-568 213-289 (312)
40 KOG0250 DNA repair protein RAD 96.9 1.5 3.2E-05 53.3 31.0 38 562-599 531-570 (1074)
41 PF01576 Myosin_tail_1: Myosin 96.8 0.00029 6.2E-09 82.6 0.0 181 338-531 571-772 (859)
42 KOG0996 Structural maintenance 96.8 1.2 2.5E-05 54.6 29.0 197 289-520 385-595 (1293)
43 KOG0933 Structural maintenance 96.8 2.2 4.7E-05 51.8 33.6 279 199-523 148-469 (1174)
44 PRK11637 AmiB activator; Provi 96.7 1.2 2.5E-05 48.5 28.0 32 529-560 221-252 (428)
45 KOG0933 Structural maintenance 96.7 2.5 5.5E-05 51.3 41.6 132 374-522 739-870 (1174)
46 PRK01156 chromosome segregatio 96.7 2.2 4.7E-05 50.3 35.5 30 153-182 414-443 (895)
47 PF05701 WEMBL: Weak chloropla 96.6 1.8 3.8E-05 48.9 38.2 217 208-453 197-414 (522)
48 KOG0995 Centromere-associated 96.6 2.1 4.6E-05 49.1 33.4 317 223-560 204-547 (581)
49 PRK04863 mukB cell division pr 96.5 4.3 9.3E-05 51.4 38.3 39 536-574 553-591 (1486)
50 PF09726 Macoilin: Transmembra 96.4 0.41 8.8E-06 55.9 21.8 219 216-478 419-654 (697)
51 PHA02562 46 endonuclease subun 96.4 1.5 3.1E-05 48.4 24.7 36 147-182 173-208 (562)
52 KOG0250 DNA repair protein RAD 96.3 3.6 7.8E-05 50.2 28.9 34 529-562 431-464 (1074)
53 PF12128 DUF3584: Protein of u 96.3 4.4 9.6E-05 49.9 44.3 139 429-574 604-758 (1201)
54 PF09726 Macoilin: Transmembra 96.1 2.2 4.7E-05 50.1 25.4 58 499-556 591-651 (697)
55 KOG0994 Extracellular matrix g 96.1 5.5 0.00012 49.3 31.1 263 213-491 1469-1734(1758)
56 PF05557 MAD: Mitotic checkpoi 96.1 0.0015 3.4E-08 74.8 0.0 147 370-516 224-427 (722)
57 KOG0612 Rho-associated, coiled 96.0 5.3 0.00011 49.5 28.2 89 341-433 508-596 (1317)
58 KOG0977 Nuclear envelope prote 95.8 2.3 4.9E-05 48.8 22.9 302 146-512 47-387 (546)
59 KOG0978 E3 ubiquitin ligase in 95.6 6.8 0.00015 46.2 33.5 225 272-522 376-614 (698)
60 PF01576 Myosin_tail_1: Myosin 95.6 0.0032 7E-08 74.0 0.0 97 345-441 289-393 (859)
61 KOG0946 ER-Golgi vesicle-tethe 95.3 3.6 7.7E-05 49.1 22.8 106 280-392 645-760 (970)
62 PF06008 Laminin_I: Laminin Do 95.2 4.2 9.1E-05 41.6 22.8 195 230-447 50-256 (264)
63 TIGR03185 DNA_S_dndD DNA sulfu 94.9 9.7 0.00021 43.8 25.6 40 142-181 210-249 (650)
64 PF06160 EzrA: Septation ring 94.8 9.6 0.00021 43.5 37.0 150 333-491 251-403 (560)
65 PF12777 MT: Microtubule-bindi 94.7 3.5 7.5E-05 44.0 19.2 96 469-571 216-314 (344)
66 KOG0946 ER-Golgi vesicle-tethe 94.4 2.3 5.1E-05 50.6 18.4 107 368-474 691-800 (970)
67 PF10473 CENP-F_leu_zip: Leuci 94.1 3.8 8.2E-05 39.5 16.2 93 326-419 10-102 (140)
68 KOG0018 Structural maintenance 94.0 21 0.00045 44.1 27.0 220 335-581 677-910 (1141)
69 KOG0963 Transcription factor/C 93.8 17 0.00036 42.5 35.6 186 208-414 55-273 (629)
70 KOG0995 Centromere-associated 93.7 17 0.00036 42.2 30.1 86 255-356 195-281 (581)
71 COG1579 Zn-ribbon protein, pos 93.7 9.8 0.00021 39.7 19.4 65 335-399 18-82 (239)
72 PF14915 CCDC144C: CCDC144C pr 93.5 13 0.00028 40.1 24.2 154 370-575 138-291 (305)
73 PLN02939 transferase, transfer 93.5 12 0.00027 45.7 22.5 57 458-528 294-350 (977)
74 KOG0977 Nuclear envelope prote 93.4 18 0.0004 41.7 23.1 86 334-419 120-219 (546)
75 PRK04778 septation ring format 93.4 17 0.00038 41.4 36.1 287 268-572 99-428 (569)
76 PF14662 CCDC155: Coiled-coil 93.3 1.5 3.2E-05 44.4 12.4 113 462-574 3-121 (193)
77 COG1579 Zn-ribbon protein, pos 93.3 12 0.00026 39.0 19.9 26 532-557 147-172 (239)
78 PF05911 DUF869: Plant protein 93.2 11 0.00023 45.1 21.0 25 484-515 736-760 (769)
79 PF05010 TACC: Transforming ac 93.1 11 0.00024 38.4 22.3 193 372-574 5-201 (207)
80 TIGR03007 pepcterm_ChnLen poly 93.1 8 0.00017 42.5 18.9 33 543-575 350-382 (498)
81 PF05483 SCP-1: Synaptonemal c 93.0 25 0.00053 41.8 35.5 123 369-534 349-475 (786)
82 PRK11281 hypothetical protein; 92.9 6.9 0.00015 48.4 19.6 31 492-522 282-312 (1113)
83 PRK09039 hypothetical protein; 92.9 6.2 0.00014 42.5 17.3 49 459-514 136-184 (343)
84 PF00038 Filament: Intermediat 92.6 14 0.0003 38.1 32.5 56 499-554 227-282 (312)
85 PF14073 Cep57_CLD: Centrosome 92.2 7.4 0.00016 39.0 15.5 145 336-522 6-154 (178)
86 PF10168 Nup88: Nuclear pore c 92.1 1.8 4E-05 50.8 13.0 112 458-575 601-712 (717)
87 PF05667 DUF812: Protein of un 92.1 29 0.00062 40.4 24.1 196 343-574 323-531 (594)
88 KOG0612 Rho-associated, coiled 92.0 42 0.0009 42.2 34.1 81 217-297 436-531 (1317)
89 PRK10929 putative mechanosensi 91.6 43 0.00094 41.8 24.0 62 460-521 215-291 (1109)
90 PF04012 PspA_IM30: PspA/IM30 91.4 16 0.00035 36.2 17.4 12 506-517 169-180 (221)
91 PF05557 MAD: Mitotic checkpoi 91.3 0.058 1.3E-06 62.2 0.0 27 338-364 118-144 (722)
92 TIGR01005 eps_transp_fam exopo 91.3 33 0.00071 40.0 21.9 71 367-450 192-262 (754)
93 TIGR00634 recN DNA repair prot 91.3 29 0.00062 39.5 21.0 9 589-597 420-428 (563)
94 PF14915 CCDC144C: CCDC144C pr 91.3 25 0.00053 38.0 24.1 151 244-406 75-230 (305)
95 PRK09039 hypothetical protein; 91.2 7.6 0.00016 41.8 15.6 49 254-302 47-95 (343)
96 PF08317 Spc7: Spc7 kinetochor 91.2 13 0.00029 39.4 17.2 52 252-308 125-176 (325)
97 PF05622 HOOK: HOOK protein; 91.0 0.1 2.2E-06 60.2 1.6 169 370-568 240-411 (713)
98 KOG0976 Rho/Rac1-interacting s 90.6 49 0.0011 40.3 33.1 275 230-525 97-381 (1265)
99 TIGR03007 pepcterm_ChnLen poly 90.4 23 0.00049 39.0 18.7 20 333-352 274-293 (498)
100 KOG0018 Structural maintenance 90.3 40 0.00086 41.8 21.6 227 256-513 237-476 (1141)
101 PF14662 CCDC155: Coiled-coil 90.1 24 0.00052 36.0 19.8 113 388-514 16-128 (193)
102 PF06008 Laminin_I: Laminin Do 89.5 27 0.00059 35.8 27.9 86 336-421 47-144 (264)
103 TIGR01843 type_I_hlyD type I s 89.4 31 0.00067 36.3 19.9 40 546-585 244-283 (423)
104 COG5185 HEC1 Protein involved 89.3 46 0.001 38.3 28.7 327 209-558 218-586 (622)
105 PF13851 GAS: Growth-arrest sp 88.6 25 0.00055 35.3 16.0 99 458-556 17-129 (201)
106 KOG0963 Transcription factor/C 88.1 62 0.0013 38.1 34.4 370 92-514 11-402 (629)
107 TIGR03185 DNA_S_dndD DNA sulfu 87.3 63 0.0014 37.4 29.6 123 268-396 160-289 (650)
108 PF00769 ERM: Ezrin/radixin/mo 87.2 15 0.00033 37.9 13.8 122 347-489 4-125 (246)
109 PF05622 HOOK: HOOK protein; 87.0 0.36 7.7E-06 55.9 2.2 45 400-444 484-528 (713)
110 PF11559 ADIP: Afadin- and alp 86.9 19 0.0004 33.9 13.2 26 538-563 123-148 (151)
111 PF10473 CENP-F_leu_zip: Leuci 86.9 31 0.00067 33.4 17.1 94 411-518 10-103 (140)
112 TIGR02977 phageshock_pspA phag 86.6 38 0.00083 34.1 19.2 48 341-388 31-78 (219)
113 PF15397 DUF4618: Domain of un 86.4 49 0.0011 35.1 17.5 143 392-572 8-155 (258)
114 KOG4593 Mitotic checkpoint pro 86.3 82 0.0018 37.6 37.2 144 277-420 115-274 (716)
115 PF05911 DUF869: Plant protein 86.3 86 0.0019 37.9 24.9 122 368-510 595-716 (769)
116 TIGR01005 eps_transp_fam exopo 85.7 80 0.0017 37.0 22.9 31 369-399 237-267 (754)
117 KOG0978 E3 ubiquitin ligase in 85.7 88 0.0019 37.4 35.7 103 463-579 506-625 (698)
118 TIGR02680 conserved hypothetic 84.9 1.2E+02 0.0027 38.5 30.0 123 308-438 222-346 (1353)
119 KOG0249 LAR-interacting protei 84.8 54 0.0012 39.4 17.8 122 379-512 66-187 (916)
120 PRK10698 phage shock protein P 84.3 51 0.0011 33.6 20.4 13 474-486 173-185 (222)
121 smart00787 Spc7 Spc7 kinetocho 84.2 25 0.00054 37.7 14.1 46 253-303 121-166 (312)
122 PF07926 TPR_MLP1_2: TPR/MLP1/ 84.1 36 0.00079 31.7 17.6 74 500-573 57-130 (132)
123 KOG0982 Centrosomal protein Nu 83.8 86 0.0019 35.8 19.5 163 368-574 249-429 (502)
124 PF15070 GOLGA2L5: Putative go 83.8 98 0.0021 36.4 32.3 135 270-404 11-157 (617)
125 PF09787 Golgin_A5: Golgin sub 83.6 85 0.0018 35.6 27.9 65 499-572 366-430 (511)
126 KOG0980 Actin-binding protein 83.5 1.2E+02 0.0026 37.3 27.6 64 340-403 388-451 (980)
127 PF15619 Lebercilin: Ciliary p 83.3 54 0.0012 33.1 19.4 23 469-491 120-142 (194)
128 PLN02939 transferase, transfer 83.0 1.3E+02 0.0029 37.3 21.3 50 468-527 352-401 (977)
129 PLN03188 kinesin-12 family pro 82.9 1.5E+02 0.0032 37.9 25.7 114 458-573 1126-1250(1320)
130 PF15070 GOLGA2L5: Putative go 82.7 1.1E+02 0.0023 36.1 37.1 142 267-419 167-315 (617)
131 KOG0979 Structural maintenance 82.4 1.4E+02 0.003 37.2 22.8 221 334-570 181-407 (1072)
132 COG0419 SbcC ATPase involved i 81.6 1.3E+02 0.0028 36.3 46.3 26 263-288 406-431 (908)
133 PRK10869 recombination and rep 81.3 1.1E+02 0.0024 35.2 25.2 16 423-438 294-309 (553)
134 COG1340 Uncharacterized archae 80.5 90 0.002 33.8 30.1 211 341-574 34-247 (294)
135 KOG0249 LAR-interacting protei 80.3 83 0.0018 37.9 17.1 82 332-418 103-184 (916)
136 PRK10884 SH3 domain-containing 80.2 19 0.00041 36.6 10.8 24 338-361 90-113 (206)
137 COG3883 Uncharacterized protei 80.0 89 0.0019 33.3 16.2 50 336-385 47-96 (265)
138 KOG1029 Endocytic adaptor prot 79.7 1.6E+02 0.0034 36.1 20.1 99 334-432 430-535 (1118)
139 PF10481 CENP-F_N: Cenp-F N-te 79.0 70 0.0015 34.5 14.7 98 350-489 41-138 (307)
140 TIGR03017 EpsF chain length de 78.4 1E+02 0.0023 33.3 19.4 36 245-280 163-198 (444)
141 PF07926 TPR_MLP1_2: TPR/MLP1/ 78.4 59 0.0013 30.4 14.6 25 385-409 40-64 (132)
142 TIGR01010 BexC_CtrB_KpsE polys 78.2 69 0.0015 34.1 14.8 138 251-403 168-305 (362)
143 COG0419 SbcC ATPase involved i 78.2 1.7E+02 0.0036 35.5 48.0 73 52-124 118-195 (908)
144 PF08614 ATG16: Autophagy prot 78.2 16 0.00034 36.0 9.4 108 287-412 73-180 (194)
145 TIGR01843 type_I_hlyD type I s 77.6 99 0.0021 32.6 17.7 12 469-480 255-266 (423)
146 PF05335 DUF745: Protein of un 77.6 84 0.0018 31.8 15.6 113 318-448 62-174 (188)
147 PF05266 DUF724: Protein of un 76.8 57 0.0012 32.8 12.9 110 286-396 77-186 (190)
148 TIGR00634 recN DNA repair prot 76.6 1.5E+02 0.0032 34.0 22.1 16 423-438 299-314 (563)
149 smart00787 Spc7 Spc7 kinetocho 76.3 71 0.0015 34.4 14.3 58 357-414 206-263 (312)
150 PF06160 EzrA: Septation ring 76.2 1.5E+02 0.0033 34.1 36.1 188 247-441 76-268 (560)
151 PF05667 DUF812: Protein of un 76.2 1.7E+02 0.0036 34.4 21.4 54 333-386 327-380 (594)
152 PRK10884 SH3 domain-containing 76.2 29 0.00062 35.3 10.7 38 367-404 130-167 (206)
153 PF04156 IncA: IncA protein; 76.2 77 0.0017 30.6 13.7 10 373-382 141-150 (191)
154 PF05483 SCP-1: Synaptonemal c 76.2 1.8E+02 0.004 35.0 37.3 194 208-411 113-331 (786)
155 PF11559 ADIP: Afadin- and alp 75.8 57 0.0012 30.7 12.0 68 333-400 65-132 (151)
156 PF04912 Dynamitin: Dynamitin 75.4 82 0.0018 34.3 14.7 20 115-134 33-52 (388)
157 PF00769 ERM: Ezrin/radixin/mo 75.2 1.1E+02 0.0023 31.9 14.7 110 375-491 4-113 (246)
158 PF13747 DUF4164: Domain of un 74.6 33 0.00073 30.6 9.5 67 338-415 12-78 (89)
159 PF15619 Lebercilin: Ciliary p 74.5 1E+02 0.0022 31.2 19.9 73 291-363 71-147 (194)
160 TIGR03017 EpsF chain length de 74.2 1.4E+02 0.0029 32.5 19.4 46 505-551 321-366 (444)
161 PF04156 IncA: IncA protein; 73.6 52 0.0011 31.7 11.5 21 394-414 127-147 (191)
162 PF12325 TMF_TATA_bd: TATA ele 73.2 83 0.0018 29.7 12.2 98 458-570 21-118 (120)
163 PRK10476 multidrug resistance 73.0 1.3E+02 0.0028 31.7 15.2 36 407-443 135-170 (346)
164 KOG0804 Cytoplasmic Zn-finger 71.9 31 0.00067 39.2 10.5 30 499-528 365-394 (493)
165 PF15294 Leu_zip: Leucine zipp 71.7 36 0.00077 36.4 10.5 94 465-558 130-239 (278)
166 COG4942 Membrane-bound metallo 71.3 1.9E+02 0.0041 32.9 24.9 70 316-385 38-110 (420)
167 KOG4438 Centromere-associated 69.8 2.1E+02 0.0045 32.7 28.0 166 401-570 220-429 (446)
168 PF08614 ATG16: Autophagy prot 68.4 49 0.0011 32.6 10.2 108 462-569 69-179 (194)
169 PRK09841 cryptic autophosphory 68.4 2.2E+02 0.0049 33.6 17.1 140 238-403 252-397 (726)
170 KOG1029 Endocytic adaptor prot 68.3 3E+02 0.0064 34.0 29.1 53 335-387 445-504 (1118)
171 KOG1853 LIS1-interacting prote 66.6 1E+02 0.0022 33.2 12.4 38 375-412 90-127 (333)
172 PF13851 GAS: Growth-arrest sp 66.3 1.5E+02 0.0033 29.9 18.7 53 306-358 27-79 (201)
173 TIGR02680 conserved hypothetic 66.3 3.8E+02 0.0082 34.4 30.7 30 99-128 424-453 (1353)
174 COG3883 Uncharacterized protei 66.2 1.9E+02 0.0041 31.0 19.2 61 499-571 166-226 (265)
175 TIGR01000 bacteriocin_acc bact 66.1 2.2E+02 0.0047 31.6 22.0 82 504-585 238-328 (457)
176 PF08647 BRE1: BRE1 E3 ubiquit 65.9 35 0.00075 30.5 7.8 58 229-286 7-64 (96)
177 COG3096 MukB Uncharacterized p 65.8 3.3E+02 0.0072 33.6 26.4 146 332-481 834-998 (1480)
178 COG4942 Membrane-bound metallo 65.1 2.5E+02 0.0054 31.9 24.6 11 426-436 162-172 (420)
179 PF10146 zf-C4H2: Zinc finger- 64.9 1.4E+02 0.003 31.1 12.9 62 516-577 39-103 (230)
180 PF15294 Leu_zip: Leucine zipp 64.7 1.1E+02 0.0023 33.0 12.3 75 370-444 126-209 (278)
181 PF08826 DMPK_coil: DMPK coile 63.8 36 0.00077 28.9 7.0 46 345-390 15-60 (61)
182 PF05266 DUF724: Protein of un 63.5 1.6E+02 0.0034 29.8 12.7 80 334-413 96-175 (190)
183 smart00338 BRLZ basic region l 63.4 43 0.00093 27.4 7.4 49 516-564 15-63 (65)
184 PRK11519 tyrosine kinase; Prov 63.3 1.7E+02 0.0038 34.4 14.9 61 332-403 337-397 (719)
185 PF07889 DUF1664: Protein of u 63.3 1.1E+02 0.0023 29.4 10.8 84 337-437 39-122 (126)
186 PF05278 PEARLI-4: Arabidopsis 63.1 2.2E+02 0.0048 30.6 15.0 54 334-387 207-260 (269)
187 PF08317 Spc7: Spc7 kinetochor 62.8 2.2E+02 0.0047 30.5 21.8 30 150-179 70-99 (325)
188 TIGR02338 gimC_beta prefoldin, 62.6 1.1E+02 0.0023 27.8 10.4 39 529-567 69-107 (110)
189 PF06810 Phage_GP20: Phage min 62.4 1.1E+02 0.0023 29.9 11.0 65 335-399 14-81 (155)
190 KOG0964 Structural maintenance 61.8 4.2E+02 0.0092 33.4 32.6 133 279-418 228-370 (1200)
191 PF10168 Nup88: Nuclear pore c 61.7 2.3E+02 0.0051 33.9 15.6 116 207-326 538-656 (717)
192 PF12325 TMF_TATA_bd: TATA ele 61.3 1.5E+02 0.0032 28.1 13.1 67 368-445 22-88 (120)
193 PF03962 Mnd1: Mnd1 family; I 60.8 87 0.0019 31.3 10.3 89 332-438 60-148 (188)
194 PF13870 DUF4201: Domain of un 60.5 1.7E+02 0.0036 28.4 17.0 109 307-418 18-140 (177)
195 cd00632 Prefoldin_beta Prefold 60.3 1.3E+02 0.0027 27.0 10.4 39 529-567 65-103 (105)
196 PF06120 Phage_HK97_TLTM: Tail 59.9 1.3E+02 0.0028 32.7 12.0 81 333-413 87-171 (301)
197 COG1842 PspA Phage shock prote 59.8 2.2E+02 0.0048 29.5 18.3 19 427-445 122-140 (225)
198 TIGR00998 8a0101 efflux pump m 59.5 2.2E+02 0.0048 29.4 15.5 61 377-441 102-162 (334)
199 PF01920 Prefoldin_2: Prefoldi 59.5 1.2E+02 0.0025 26.3 10.4 67 499-565 9-100 (106)
200 TIGR02132 phaR_Bmeg polyhydrox 59.5 81 0.0017 32.2 9.7 91 322-412 60-150 (189)
201 PRK11281 hypothetical protein; 59.2 4.7E+02 0.01 33.2 36.6 58 244-301 126-183 (1113)
202 PF15456 Uds1: Up-regulated Du 59.0 1.4E+02 0.0031 28.3 10.9 74 332-405 20-117 (124)
203 KOG0804 Cytoplasmic Zn-finger 58.5 1.8E+02 0.0039 33.4 13.2 21 108-128 87-107 (493)
204 PRK10929 putative mechanosensi 57.6 5E+02 0.011 33.0 30.1 30 424-453 278-307 (1109)
205 PF04102 SlyX: SlyX; InterPro 57.4 43 0.00094 28.3 6.5 47 529-575 6-52 (69)
206 PRK03598 putative efflux pump 55.7 2E+02 0.0044 30.0 12.5 38 548-585 178-215 (331)
207 PF10212 TTKRSYEDQ: Predicted 55.2 4E+02 0.0087 31.1 19.0 25 467-491 420-444 (518)
208 PF09728 Taxilin: Myosin-like 54.7 3E+02 0.0066 29.6 29.2 79 489-567 203-298 (309)
209 PRK00295 hypothetical protein; 54.5 57 0.0012 27.8 6.8 47 529-575 7-53 (68)
210 COG2433 Uncharacterized conser 54.3 1.7E+02 0.0036 34.8 12.4 71 333-403 435-508 (652)
211 TIGR02977 phageshock_pspA phag 54.0 2.5E+02 0.0054 28.4 14.8 44 529-572 101-144 (219)
212 KOG4673 Transcription factor T 53.8 5E+02 0.011 31.8 34.7 103 368-485 522-630 (961)
213 COG1566 EmrA Multidrug resista 52.8 2.5E+02 0.0055 30.9 13.1 100 341-443 98-208 (352)
214 PF07106 TBPIP: Tat binding pr 52.8 91 0.002 30.0 8.8 61 333-393 71-133 (169)
215 TIGR02338 gimC_beta prefoldin, 52.7 1.5E+02 0.0033 26.8 9.7 76 427-521 26-107 (110)
216 TIGR01000 bacteriocin_acc bact 52.6 3.6E+02 0.0079 29.9 20.5 24 500-523 289-312 (457)
217 PRK00736 hypothetical protein; 52.2 65 0.0014 27.4 6.8 47 529-575 7-53 (68)
218 KOG1853 LIS1-interacting prote 52.1 3.4E+02 0.0074 29.4 18.3 76 392-480 29-104 (333)
219 KOG1655 Protein involved in va 51.8 3E+02 0.0066 28.7 13.2 95 474-575 19-153 (218)
220 PRK11085 magnesium/nickel/coba 51.6 38 0.00083 36.3 6.6 76 96-182 128-203 (316)
221 PF00170 bZIP_1: bZIP transcri 51.5 1.1E+02 0.0023 25.1 7.8 48 517-564 16-63 (64)
222 PRK00846 hypothetical protein; 50.7 77 0.0017 28.0 7.2 49 527-575 13-61 (77)
223 KOG0962 DNA repair protein RAD 49.9 7E+02 0.015 32.3 30.8 128 143-295 821-955 (1294)
224 PRK04325 hypothetical protein; 49.9 72 0.0016 27.6 6.8 47 529-575 11-57 (74)
225 PTZ00464 SNF-7-like protein; P 49.1 1.4E+02 0.0029 30.7 9.7 73 477-559 21-93 (211)
226 PF09755 DUF2046: Uncharacteri 48.6 4E+02 0.0088 29.2 24.8 199 308-591 22-226 (310)
227 COG1382 GimC Prefoldin, chaper 48.5 97 0.0021 29.5 7.9 72 428-511 30-107 (119)
228 PF06005 DUF904: Protein of un 48.3 86 0.0019 27.2 7.0 46 529-574 6-51 (72)
229 PF12329 TMF_DNA_bd: TATA elem 48.0 1.2E+02 0.0026 26.2 7.8 62 333-394 11-72 (74)
230 PF04728 LPP: Lipoprotein leuc 47.8 94 0.002 26.2 6.8 34 363-396 18-51 (56)
231 TIGR00293 prefoldin, archaeal 47.5 81 0.0017 28.7 7.2 44 530-573 82-125 (126)
232 PRK09343 prefoldin subunit bet 47.3 2.4E+02 0.0052 26.3 10.8 41 528-568 72-112 (121)
233 KOG4643 Uncharacterized coiled 46.8 7.2E+02 0.016 31.6 27.9 34 529-562 525-558 (1195)
234 PF04108 APG17: Autophagy prot 46.7 4.5E+02 0.0097 29.2 26.1 89 268-358 116-216 (412)
235 PF11471 Sugarporin_N: Maltopo 46.1 30 0.00065 29.1 3.8 29 373-401 29-57 (60)
236 KOG0993 Rab5 GTPase effector R 45.8 1.2E+02 0.0026 34.6 9.3 72 396-482 106-177 (542)
237 PRK02793 phi X174 lysis protei 45.8 1.1E+02 0.0023 26.4 7.2 48 528-575 9-56 (72)
238 PLN03229 acetyl-coenzyme A car 45.6 6.6E+02 0.014 30.8 15.8 213 258-505 434-705 (762)
239 PRK09343 prefoldin subunit bet 45.6 2.6E+02 0.0056 26.1 10.6 77 427-522 30-112 (121)
240 PF04012 PspA_IM30: PspA/IM30 45.0 3.2E+02 0.007 27.1 21.2 51 346-396 28-78 (221)
241 PF05546 She9_MDM33: She9 / Md 44.9 3.8E+02 0.0083 27.9 12.8 49 322-372 22-70 (207)
242 PF10234 Cluap1: Clusterin-ass 44.8 4.2E+02 0.0092 28.4 13.4 117 222-356 123-240 (267)
243 PF04582 Reo_sigmaC: Reovirus 44.5 40 0.00087 36.8 5.4 105 264-386 32-136 (326)
244 PRK02119 hypothetical protein; 44.5 98 0.0021 26.8 6.8 48 528-575 10-57 (73)
245 PF02994 Transposase_22: L1 tr 44.4 32 0.00068 37.6 4.7 50 372-421 140-189 (370)
246 PF05010 TACC: Transforming ac 44.0 3.8E+02 0.0082 27.6 24.0 38 484-528 139-180 (207)
247 PRK10361 DNA recombination pro 43.8 5.7E+02 0.012 29.6 17.0 102 394-513 96-197 (475)
248 PF13514 AAA_27: AAA domain 43.7 7.4E+02 0.016 30.9 35.7 337 207-567 532-929 (1111)
249 PF04111 APG6: Autophagy prote 43.5 2.6E+02 0.0055 30.1 11.2 70 338-407 61-137 (314)
250 PF09403 FadA: Adhesion protei 42.6 3.1E+02 0.0068 26.2 10.7 69 506-574 24-101 (126)
251 PF10186 Atg14: UV radiation r 42.4 3.7E+02 0.0081 27.1 18.6 77 469-552 58-134 (302)
252 PF05546 She9_MDM33: She9 / Md 42.0 4.2E+02 0.0092 27.6 14.5 52 368-419 31-82 (207)
253 PRK04406 hypothetical protein; 41.9 1.7E+02 0.0037 25.5 7.9 48 528-575 12-59 (75)
254 PF00435 Spectrin: Spectrin re 41.4 1.9E+02 0.0042 23.5 11.6 80 337-418 4-87 (105)
255 PF10481 CENP-F_N: Cenp-F N-te 41.3 5.1E+02 0.011 28.3 13.1 94 394-522 15-108 (307)
256 PF12795 MscS_porin: Mechanose 41.2 4E+02 0.0087 27.1 21.0 147 242-407 81-228 (240)
257 PF07544 Med9: RNA polymerase 40.9 65 0.0014 28.2 5.3 41 95-135 6-49 (83)
258 PF12777 MT: Microtubule-bindi 40.8 86 0.0019 33.7 7.2 29 148-176 8-36 (344)
259 KOG4643 Uncharacterized coiled 40.7 8.9E+02 0.019 30.9 33.4 63 229-291 181-246 (1195)
260 PRK10869 recombination and rep 40.6 6.3E+02 0.014 29.2 22.4 19 510-528 297-315 (553)
261 PF06818 Fez1: Fez1; InterPro 40.1 4.4E+02 0.0096 27.3 12.7 101 462-569 61-170 (202)
262 PRK11020 hypothetical protein; 39.6 1.5E+02 0.0032 28.4 7.6 67 500-580 3-70 (118)
263 PF04111 APG6: Autophagy prote 39.6 3.8E+02 0.0083 28.8 11.7 50 333-382 42-91 (314)
264 KOG4360 Uncharacterized coiled 38.7 7.3E+02 0.016 29.4 16.7 134 333-476 89-249 (596)
265 PF09744 Jnk-SapK_ap_N: JNK_SA 38.3 2.9E+02 0.0062 27.3 9.8 100 306-409 26-129 (158)
266 PF12329 TMF_DNA_bd: TATA elem 37.7 2.5E+02 0.0054 24.3 8.2 24 335-358 34-57 (74)
267 TIGR01010 BexC_CtrB_KpsE polys 37.5 5.4E+02 0.012 27.5 13.4 82 306-387 174-260 (362)
268 PF10212 TTKRSYEDQ: Predicted 37.0 3.4E+02 0.0073 31.7 11.3 92 297-391 404-509 (518)
269 PF08826 DMPK_coil: DMPK coile 36.9 2.3E+02 0.0051 24.1 7.7 39 379-417 14-52 (61)
270 PRK15396 murein lipoprotein; P 36.8 1.3E+02 0.0028 26.7 6.4 46 352-397 29-74 (78)
271 PF14197 Cep57_CLD_2: Centroso 36.5 2.8E+02 0.006 23.9 8.5 27 333-359 4-30 (69)
272 PRK11519 tyrosine kinase; Prov 36.3 6E+02 0.013 30.1 13.7 38 267-304 260-297 (719)
273 PF15254 CCDC14: Coiled-coil d 36.1 9.3E+02 0.02 29.8 16.3 126 276-416 339-474 (861)
274 PF10146 zf-C4H2: Zinc finger- 35.9 5.3E+02 0.011 26.9 13.5 45 368-412 59-103 (230)
275 PF05278 PEARLI-4: Arabidopsis 35.8 5.9E+02 0.013 27.5 12.3 53 368-420 213-265 (269)
276 KOG1899 LAR transmembrane tyro 35.7 8.9E+02 0.019 29.5 20.1 63 334-396 104-166 (861)
277 COG1842 PspA Phage shock prote 35.5 5.3E+02 0.011 26.8 16.0 63 332-394 83-145 (225)
278 PF12072 DUF3552: Domain of un 35.3 4.7E+02 0.01 26.1 12.0 51 334-384 78-128 (201)
279 KOG0239 Kinesin (KAR3 subfamil 35.0 8.7E+02 0.019 29.2 22.4 136 479-622 225-391 (670)
280 PF10267 Tmemb_cc2: Predicted 35.0 6.3E+02 0.014 28.5 12.8 52 426-480 259-318 (395)
281 PRK10246 exonuclease subunit S 34.5 1E+03 0.022 29.8 31.7 21 425-445 777-797 (1047)
282 PF05377 FlaC_arch: Flagella a 34.2 94 0.002 26.1 4.9 38 377-414 1-38 (55)
283 PF09728 Taxilin: Myosin-like 34.2 6.3E+02 0.014 27.3 24.8 76 332-414 20-95 (309)
284 PRK09841 cryptic autophosphory 34.1 8.7E+02 0.019 28.9 15.0 37 370-406 261-297 (726)
285 PF06548 Kinesin-related: Kine 34.0 8.1E+02 0.018 28.5 21.3 40 536-575 384-423 (488)
286 TIGR02231 conserved hypothetic 33.7 3.9E+02 0.0085 30.2 11.2 86 333-418 70-173 (525)
287 COG1382 GimC Prefoldin, chaper 33.6 3.5E+02 0.0075 25.9 9.1 19 285-303 10-28 (119)
288 KOG0982 Centrosomal protein Nu 33.4 8.2E+02 0.018 28.4 18.9 28 333-360 249-276 (502)
289 COG1566 EmrA Multidrug resista 33.4 7E+02 0.015 27.6 13.1 76 353-438 89-164 (352)
290 PF03915 AIP3: Actin interacti 33.4 6.6E+02 0.014 28.6 12.8 31 448-482 212-242 (424)
291 COG0497 RecN ATPase involved i 33.1 8.9E+02 0.019 28.7 24.9 39 260-298 157-195 (557)
292 COG2433 Uncharacterized conser 32.3 3.2E+02 0.0069 32.7 10.3 33 543-575 476-508 (652)
293 PF10779 XhlA: Haemolysin XhlA 32.2 2.2E+02 0.0048 24.0 7.0 46 338-383 3-48 (71)
294 PF03310 Cauli_DNA-bind: Cauli 31.8 71 0.0015 30.6 4.3 81 107-189 6-101 (121)
295 PF07106 TBPIP: Tat binding pr 31.7 2.1E+02 0.0046 27.4 7.7 23 336-358 81-103 (169)
296 PF10234 Cluap1: Clusterin-ass 30.9 1.9E+02 0.004 31.0 7.7 48 350-397 171-218 (267)
297 PF05529 Bap31: B-cell recepto 30.8 3.6E+02 0.0077 26.4 9.2 62 339-400 123-185 (192)
298 KOG0239 Kinesin (KAR3 subfamil 30.4 1E+03 0.022 28.6 16.2 14 572-585 400-413 (670)
299 KOG0962 DNA repair protein RAD 29.9 1.4E+03 0.03 29.9 38.2 34 489-522 532-565 (1294)
300 KOG4809 Rab6 GTPase-interactin 29.8 1E+03 0.022 28.4 26.5 48 388-438 429-476 (654)
301 KOG3647 Predicted coiled-coil 29.5 3.2E+02 0.0069 29.8 9.0 59 275-333 106-164 (338)
302 PF15397 DUF4618: Domain of un 29.2 7.4E+02 0.016 26.5 24.7 63 534-596 186-250 (258)
303 PRK00409 recombination and DNA 29.0 5.4E+02 0.012 31.1 11.9 69 371-445 515-583 (782)
304 PF08537 NBP1: Fungal Nap bind 28.8 3.3E+02 0.0071 30.1 9.1 46 333-378 174-219 (323)
305 PF00170 bZIP_1: bZIP transcri 28.7 84 0.0018 25.7 3.8 30 489-518 34-63 (64)
306 PF02050 FliJ: Flagellar FliJ 28.2 3.7E+02 0.008 22.8 9.2 69 334-402 12-85 (123)
307 PF09177 Syntaxin-6_N: Syntaxi 28.1 4.2E+02 0.0092 23.4 8.4 62 405-477 33-94 (97)
308 PRK09973 putative outer membra 27.7 2E+02 0.0044 26.0 6.2 27 368-394 44-70 (85)
309 PF06428 Sec2p: GDP/GTP exchan 27.4 1.5E+02 0.0033 27.2 5.5 72 365-443 11-83 (100)
310 PF07439 DUF1515: Protein of u 27.4 2.7E+02 0.0058 26.5 7.1 50 336-385 10-63 (112)
311 PF10158 LOH1CR12: Tumour supp 27.3 5.6E+02 0.012 24.6 10.3 78 501-583 48-129 (131)
312 PF09738 DUF2051: Double stran 27.3 8.2E+02 0.018 26.6 11.8 24 596-619 189-212 (302)
313 KOG0980 Actin-binding protein 26.7 1.4E+03 0.03 28.9 25.5 49 464-519 470-518 (980)
314 PF01920 Prefoldin_2: Prefoldi 26.5 4.2E+02 0.0091 22.8 8.6 20 338-357 66-85 (106)
315 KOG4324 Guanine nucleotide exc 26.2 4E+02 0.0088 30.6 9.5 163 384-562 59-236 (476)
316 PF06810 Phage_GP20: Phage min 26.0 2.7E+02 0.0059 27.1 7.3 46 306-352 24-69 (155)
317 KOG3850 Predicted membrane pro 25.6 9.9E+02 0.022 27.4 12.2 52 426-480 307-366 (455)
318 PF15188 CCDC-167: Coiled-coil 25.6 1.9E+02 0.0041 26.1 5.7 60 223-282 2-65 (85)
319 TIGR01069 mutS2 MutS2 family p 25.6 6E+02 0.013 30.8 11.4 48 372-419 511-558 (771)
320 PF10498 IFT57: Intra-flagella 25.5 7E+02 0.015 27.6 11.1 44 373-416 263-306 (359)
321 PRK13729 conjugal transfer pil 25.5 2.2E+02 0.0048 32.8 7.5 48 338-385 73-120 (475)
322 KOG4603 TBP-1 interacting prot 25.2 6.4E+02 0.014 26.0 9.8 96 299-394 30-141 (201)
323 PF13094 CENP-Q: CENP-Q, a CEN 25.0 2.5E+02 0.0054 26.8 6.8 51 369-419 34-84 (160)
324 PF13747 DUF4164: Domain of un 24.9 5.1E+02 0.011 23.2 10.2 75 499-574 5-79 (89)
325 PF10186 Atg14: UV radiation r 24.8 7.3E+02 0.016 25.0 15.9 46 369-414 63-108 (302)
326 PF04912 Dynamitin: Dynamitin 24.6 9.5E+02 0.021 26.3 15.3 13 369-381 246-258 (388)
327 PF00846 Hanta_nucleocap: Hant 24.6 3.3E+02 0.0072 30.9 8.4 54 334-387 2-67 (428)
328 PF15254 CCDC14: Coiled-coil d 24.6 1.1E+03 0.024 29.3 13.0 130 368-528 393-527 (861)
329 PF06785 UPF0242: Uncharacteri 23.9 1.1E+03 0.023 26.7 12.6 45 370-414 128-172 (401)
330 PRK11578 macrolide transporter 23.7 3.1E+02 0.0068 29.2 7.9 24 428-451 102-125 (370)
331 PRK10698 phage shock protein P 23.5 8.1E+02 0.018 25.1 15.5 57 518-574 87-146 (222)
332 PF04100 Vps53_N: Vps53-like, 23.4 1E+03 0.022 26.3 17.5 69 333-401 24-96 (383)
333 PF05384 DegS: Sensor protein 23.3 7.4E+02 0.016 24.6 13.3 84 464-561 31-118 (159)
334 PF07544 Med9: RNA polymerase 23.2 5.1E+02 0.011 22.7 8.2 77 133-234 2-78 (83)
335 PRK00295 hypothetical protein; 23.1 4.1E+02 0.0088 22.7 7.0 29 540-568 25-53 (68)
336 PF09730 BicD: Microtubule-ass 22.9 1.4E+03 0.031 27.8 36.1 312 234-574 22-445 (717)
337 PF05529 Bap31: B-cell recepto 22.7 5.4E+02 0.012 25.2 8.8 10 461-470 116-125 (192)
338 PF11471 Sugarporin_N: Maltopo 22.6 1E+02 0.0023 25.9 3.3 30 367-396 30-59 (60)
339 PF14584 DUF4446: Protein of u 22.4 2.7E+02 0.0059 27.2 6.5 58 536-593 41-98 (151)
340 PF04849 HAP1_N: HAP1 N-termin 22.3 1.1E+03 0.023 26.0 22.4 21 336-356 162-182 (306)
341 PF06818 Fez1: Fez1; InterPro 22.1 6.4E+02 0.014 26.1 9.3 76 307-386 15-90 (202)
342 PF02181 FH2: Formin Homology 22.0 9.5E+02 0.021 25.5 11.1 194 107-354 139-343 (370)
343 PRK03947 prefoldin subunit alp 22.0 6.4E+02 0.014 23.4 10.6 43 531-573 91-133 (140)
344 PF05739 SNARE: SNARE domain; 21.7 4.1E+02 0.0089 21.0 8.7 56 350-405 6-61 (63)
345 KOG4403 Cell surface glycoprot 21.7 1.1E+03 0.023 27.6 11.6 30 431-460 353-382 (575)
346 PF14257 DUF4349: Domain of un 21.6 7.6E+02 0.016 25.3 10.0 67 499-574 129-195 (262)
347 PF04977 DivIC: Septum formati 21.5 1.5E+02 0.0033 24.3 4.1 37 543-579 19-55 (80)
348 PF09177 Syntaxin-6_N: Syntaxi 21.4 5.7E+02 0.012 22.6 8.6 51 496-546 40-93 (97)
349 PF10046 BLOC1_2: Biogenesis o 21.4 6E+02 0.013 22.8 9.2 29 536-564 68-96 (99)
350 KOG1937 Uncharacterized conser 21.3 1.4E+03 0.029 26.9 19.4 46 529-574 384-429 (521)
351 PF06156 DUF972: Protein of un 21.1 3.4E+02 0.0074 25.2 6.6 44 531-574 5-48 (107)
352 PF08647 BRE1: BRE1 E3 ubiquit 21.0 6.1E+02 0.013 22.7 9.6 43 378-420 26-68 (96)
353 PF10458 Val_tRNA-synt_C: Valy 21.0 4.9E+02 0.011 21.6 7.3 27 333-359 3-29 (66)
354 PF06548 Kinesin-related: Kine 20.9 1.4E+03 0.03 26.8 21.7 111 462-574 360-481 (488)
355 PF07851 TMPIT: TMPIT-like pro 20.7 6.6E+02 0.014 27.8 9.6 59 333-391 3-61 (330)
356 PF10498 IFT57: Intra-flagella 20.4 1.2E+03 0.026 25.9 11.9 20 62-83 47-66 (359)
No 1
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=100.00 E-value=5.1e-34 Score=276.39 Aligned_cols=188 Identities=18% Similarity=0.260 Sum_probs=184.8
Q ss_pred hHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhh
Q 006984 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (623)
Q Consensus 367 sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~a 446 (623)
++++|++++|+|++|++++++|++|+.+|.+|+.+++++|+|.+|++|+|++|+..+++||+.+|.||++++ +
T Consensus 2 ae~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk-------~ 74 (205)
T KOG1003|consen 2 AEADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAK-------H 74 (205)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------H
Confidence 467899999999999999999999999999999999999999999999999999999999999999999988 9
Q ss_pred hhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHH
Q 006984 447 SSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKA 526 (623)
Q Consensus 447 saEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~ 526 (623)
+|+++++ ||++|+|+++||| ++|++++.||+.+|++|. +|.++++++++++++|+++.++++++.+
T Consensus 75 iaE~adr----K~eEVarkL~iiE---~dLE~~eeraE~~Es~~~-------eLeEe~~~~~~nlk~l~~~ee~~~q~~d 140 (205)
T KOG1003|consen 75 IAEKADR----KYEEVARKLVIIE---GELERAEERAEAAESQSE-------ELEEDLRILDSNLKSLSAKEEKLEQKEE 140 (205)
T ss_pred HHHHHHH----HHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHH-------HHHHHHHHhHhHHHHHHHHHHHHhhhHH
Confidence 9999999 9999999999999 999999999999999999 9999999999999999999999999999
Q ss_pred hh----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006984 527 AS----------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (623)
Q Consensus 527 ~t----------lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (623)
.| +|++++|++|++|.|++|+++||+|++.+...+.+|+.+...||+|-
T Consensus 141 ~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~ 199 (205)
T KOG1003|consen 141 KYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETL 199 (205)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 99 99999999999999999999999999999999999999999999984
No 2
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=99.96 E-value=1.2e-28 Score=243.32 Aligned_cols=213 Identities=23% Similarity=0.342 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHhh-------hHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHh
Q 006984 341 EKVKSLEEQLKESEIRLQNANACFQT-------SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEI 413 (623)
Q Consensus 341 kKvksLE~qLdes~eQL~~A~aklEe-------sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerel 413 (623)
+|+..++.+++.+..++..+..++.. +++++++|+|+|++|++++.++++|+..+..||..+++.++++.|.+
T Consensus 1 kK~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~ 80 (237)
T PF00261_consen 1 KKIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERAR 80 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888887777777766666644 48899999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhh
Q 006984 414 NFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVL 493 (623)
Q Consensus 414 k~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~L 493 (623)
++|++|...+++|++.||.||++++ .+++.++. +|+++.+++.+++ ++|.+++.|++.+|++|.
T Consensus 81 k~lE~r~~~~eeri~~lE~~l~ea~-------~~~ee~e~----k~~E~~rkl~~~E---~~Le~aEeR~e~~E~ki~-- 144 (237)
T PF00261_consen 81 KVLENREQSDEERIEELEQQLKEAK-------RRAEEAER----KYEEVERKLKVLE---QELERAEERAEAAESKIK-- 144 (237)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHH-------HHHHHHHH----HHHHCHHHHHHHH---HHHHHHHHHHHHHHHHHH--
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH----HHHHHHHHHHHHH---HHHHHHHHHHhhhchhHH--
Confidence 9999999989999999999999988 99999999 9999999999999 999999999999999999
Q ss_pred ccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006984 494 SEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS----------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSE 563 (623)
Q Consensus 494 se~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~t----------lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~kee 563 (623)
+|+++|..++++|++||++..+|+++++.| +|+++.|+.++++.|.+|+.++|+|++.|...+.+
T Consensus 145 -----eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~ 219 (237)
T PF00261_consen 145 -----ELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEK 219 (237)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred hhHHHHHHhhc
Q 006984 564 NKLLVEKLQYS 574 (623)
Q Consensus 564 nK~L~ekld~t 574 (623)
|+.+..+||+|
T Consensus 220 ~~~~~~eld~~ 230 (237)
T PF00261_consen 220 YKKVQEELDQT 230 (237)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999987
No 3
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=99.21 E-value=2.5e-10 Score=107.02 Aligned_cols=107 Identities=22% Similarity=0.348 Sum_probs=99.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHH---HHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHH
Q 006984 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE---QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLE 408 (623)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~---EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdE 408 (623)
.+.|+.+|++|+..||.+|+.++.+|..++..++.... .+-+|+|+|+.|++++.+|+.++..|..|+.++...+++
T Consensus 33 ~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~ 112 (143)
T PF12718_consen 33 KEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEH 112 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 47899999999999999999999999999999998854 344899999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCCcchhhhhHHHHHHHHH
Q 006984 409 LSEEINFLKGNNDSNTKKVGILENQLRDLE 438 (623)
Q Consensus 409 Lerelk~Lesrs~~deEk~~~LE~QLKEa~ 438 (623)
++|.++.|+.+....+.|++.|+.++++++
T Consensus 113 ~eRkv~~le~~~~~~E~k~eel~~k~~~~k 142 (143)
T PF12718_consen 113 FERKVKALEQERDQWEEKYEELEEKYKEAK 142 (143)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence 999999999999888999999999988764
No 4
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=99.18 E-value=7.3e-10 Score=110.28 Aligned_cols=222 Identities=19% Similarity=0.275 Sum_probs=149.1
Q ss_pred hhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhH
Q 006984 289 RFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQ 368 (623)
Q Consensus 289 kLq~~qf~L~~s~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE 368 (623)
|++.++.+|-.+..|...+..+|+.....+. . -+.++.+|+.|++.+|.+|+.++..|..+..+++..+
T Consensus 2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~~~----------~-aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e 70 (237)
T PF00261_consen 2 KIQQLKDELDEAEERLEEAEEKLKEAEKRAE----------K-AEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAE 70 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H-HHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5666777777777777777777666553333 2 2689999999999999999999999888888887753
Q ss_pred H-------HHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHH
Q 006984 369 E-------QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQL 441 (623)
Q Consensus 369 ~-------EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QL 441 (623)
. ....|+++.....+.+..-|.++..|...+..+..-.++..+.+.++++.=...++|++.+|.++++.+.+|
T Consensus 71 ~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el 150 (237)
T PF00261_consen 71 KRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEEL 150 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Confidence 3 233333333333333333333333333333333333344445555555542223567888888888887777
Q ss_pred HHhhhhhHhHHHHHhhhHH-HHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHH
Q 006984 442 QQAKVSSEASQEQQSMLYS-AIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNR 520 (623)
Q Consensus 442 qhA~asaEas~eqQ~mky~-ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~k 520 (623)
.........-..... +|+ .....+.-|.+|..++..|+.|++.||.+|..|-..+..|+.+|.....+.+++..-++.
T Consensus 151 ~~~~~~lk~lE~~~~-~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~ 229 (237)
T PF00261_consen 151 KSVGNNLKSLEASEE-KASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQ 229 (237)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666544333222122 333 456677788889999999999999999999988888888888888888888888877776
Q ss_pred Hh
Q 006984 521 AN 522 (623)
Q Consensus 521 A~ 522 (623)
+.
T Consensus 230 ~l 231 (237)
T PF00261_consen 230 TL 231 (237)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 5
>PRK02224 chromosome segregation protein; Provisional
Probab=99.01 E-value=5.7e-05 Score=86.84 Aligned_cols=44 Identities=18% Similarity=0.207 Sum_probs=29.0
Q ss_pred hHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhc
Q 006984 229 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEA 272 (623)
Q Consensus 229 dLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EA 272 (623)
.++.++.......+.+..++...+.....++.....+....-.+
T Consensus 262 ~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~ 305 (880)
T PRK02224 262 DLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLD 305 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35666666666667777777777777777776666655544333
No 6
>PRK02224 chromosome segregation protein; Provisional
Probab=98.97 E-value=1.9e-05 Score=90.61 Aligned_cols=186 Identities=21% Similarity=0.255 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 006984 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (623)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk 414 (623)
++..++.++..++..++....++..+....+....++.++...++..+.....+++.+..+..++..+.....+++.+++
T Consensus 510 ~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 589 (880)
T PRK02224 510 RIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIE 589 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555555555555666666666666666666666666666
Q ss_pred hhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhH-----HHHHHHHhhhhhhhhhhhhhhhhh
Q 006984 415 FLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDM-----ETLIEDLKSKVSKAESKTESVEEQ 489 (623)
Q Consensus 415 ~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dm-----e~vIEdLk~Kl~rAE~RaE~aEsK 489 (623)
.|+.. ..-...+..++..+.+.+..+......-+....+-..+-..+..+ ..-++.+..++.+++..++.++.+
T Consensus 590 ~le~~-~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~ 668 (880)
T PRK02224 590 SLERI-RTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEK 668 (880)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66521 001122222222222222222111111111111111122222222 234455666777777777777777
Q ss_pred hhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 006984 490 CIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (623)
Q Consensus 490 c~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~t 528 (623)
+. ++..++..+..++..++..+.........+
T Consensus 669 l~-------~~~~~~~~l~~~i~~~~~~~e~~~~~~~~~ 700 (880)
T PRK02224 669 LD-------ELREERDDLQAEIGAVENELEELEELRERR 700 (880)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 777777777777777777776664444443
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.74 E-value=0.00013 Score=84.71 Aligned_cols=54 Identities=17% Similarity=0.245 Sum_probs=27.7
Q ss_pred chHHHHHHHHHH---HHhhhhhhhHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHH
Q 006984 209 NADQQRHILRML---EKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAA 262 (623)
Q Consensus 209 t~eqqR~iLrML---ekSla~eldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~ 262 (623)
.+..+|.+|..+ .....+-.+...+|.....+..+|+..+.........++...
T Consensus 151 ~~~~r~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~ 207 (1164)
T TIGR02169 151 SPVERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRER 207 (1164)
T ss_pred CHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788877654 222223333444555555555555555555555444444333
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.70 E-value=4.2e-05 Score=88.16 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=27.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006984 501 KNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYS 559 (623)
Q Consensus 501 eEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s 559 (623)
..++.-++.+++.|...++.+...+ ..+..|..|...-...|...++.|+..|..
T Consensus 964 ~~~~~~l~~~i~~lg~aiee~~~~~----~~a~er~~~l~~q~~dL~~~~~~L~~~i~~ 1018 (1179)
T TIGR02168 964 EDDEEEARRRLKRLENKIKELGPVN----LAAIEEYEELKERYDFLTAQKEDLTEAKET 1018 (1179)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777766555554433 112234444444444444444444444333
No 9
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.68 E-value=3.3e-05 Score=92.35 Aligned_cols=76 Identities=18% Similarity=0.221 Sum_probs=48.5
Q ss_pred HHhhHHHHHHH---HHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHhhcCCCCceee
Q 006984 507 MRDKIKILESS---LNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL-VEKLQYSGKSSSATM 582 (623)
Q Consensus 507 l~~~lksLE~s---l~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L-~ekld~t~~~~~~~~ 582 (623)
+..+++.++.. +...|-+-..-.++...|.++...-...|...+++|++.|.....+.+.. .+.++....+-+..+
T Consensus 947 ~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~if 1026 (1163)
T COG1196 947 LEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEIF 1026 (1163)
T ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555 22223223333677888888889999999999999999998877665543 555555544444333
No 10
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.65 E-value=0.00098 Score=80.97 Aligned_cols=69 Identities=20% Similarity=0.250 Sum_probs=36.7
Q ss_pred hhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcc
Q 006984 107 SELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFI 182 (623)
Q Consensus 107 sEv~ele~~~~~lq~~I~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~~e~~~ei~~qsa~f~r~~~~~~ 182 (623)
.++.+++.-+.++..++......+.+|.- .++ - ..-..++..-|.+.++.+...+...+.|.-+..+|.
T Consensus 598 ~el~~~e~~l~~~~~~l~~~~~eL~~~~~--~i~--~---~~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~ 666 (1311)
T TIGR00606 598 KELASLEQNKNHINNELESKEEQLSSYED--KLF--D---VCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYS 666 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHh--c---CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444432 000 0 113455667777777777777777666666655554
No 11
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.63 E-value=0.00042 Score=80.61 Aligned_cols=16 Identities=13% Similarity=0.378 Sum_probs=7.8
Q ss_pred hHHHHHHHHHhhHHHH
Q 006984 499 ELKNKQSFMRDKIKIL 514 (623)
Q Consensus 499 ELeEEL~~l~~~lksL 514 (623)
++..++..+..+++.+
T Consensus 955 ~l~~~l~~l~~~i~~l 970 (1164)
T TIGR02169 955 DVQAELQRVEEEIRAL 970 (1164)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 4445555555544444
No 12
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.60 E-value=0.00032 Score=81.06 Aligned_cols=57 Identities=19% Similarity=0.049 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh---HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 006984 498 FELKNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNHRTKLMMEMVMQLATQRELIQ 554 (623)
Q Consensus 498 ~ELeEEL~~l~~~lksLE~sl~kA~q~k~~t---lKeae~Rak~aE~lV~KL~~ErdrLe 554 (623)
.+|...|.-++..+..++.....|.++-+.+ ..|+....+-.+..+.++..+..++-
T Consensus 968 ~~l~~~i~~lg~aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f 1027 (1179)
T TIGR02168 968 EEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEID 1027 (1179)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888888886666654332333333333 45555555555666666655555554
No 13
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.37 E-value=0.018 Score=70.31 Aligned_cols=56 Identities=11% Similarity=0.003 Sum_probs=35.8
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcc
Q 006984 243 QLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLN 298 (623)
Q Consensus 243 eLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~ 298 (623)
.+...+.....+...+++....+...+-++++-...+++..+.+...|+...-.+.
T Consensus 574 ~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~ 629 (1311)
T TIGR00606 574 QLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLF 629 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555566666666666666666677777777777777777776666666
No 14
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.35 E-value=0.015 Score=73.43 Aligned_cols=333 Identities=20% Similarity=0.230 Sum_probs=160.6
Q ss_pred hHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHH
Q 006984 229 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELK 308 (623)
Q Consensus 229 dLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~~s~~REsel~ 308 (623)
.++.++...+.-...+.........+++-+|+....+...+.+.+--+. -++.+..||....-+|.+...+|...+
T Consensus 961 ~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~----~l~k~~~kle~~l~~le~~le~e~~~r 1036 (1930)
T KOG0161|consen 961 AAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAK----SLNKAKAKLEQQLDDLEVTLEREKRIR 1036 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333334444444444555555555444444443332222 123344555555555555555555555
Q ss_pred HHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh-------HHHHHhHHHHHHHH
Q 006984 309 SKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS-------QEQLNEMDNFIESL 381 (623)
Q Consensus 309 sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes-------E~EVaaLerrIelL 381 (623)
-.++...-.|+ ..|.-+ -+.+..+..+...|+++++.-...+.+.+.+++.- +..|..|.++|.+|
T Consensus 1037 ~e~Ek~~rkle---~el~~~----~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el 1109 (1930)
T KOG0161|consen 1037 MELEKAKRKLE---GELKDL----QESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKEL 1109 (1930)
T ss_pred HHHHHHHHHHH---HHHHHh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54443322222 122111 12233355666666666666666666666666553 33555666666666
Q ss_pred HhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCc------------------chhhhhHHHHHHHHHHHHHH
Q 006984 382 KESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSN------------------TKKVGILENQLRDLEIQLQQ 443 (623)
Q Consensus 382 KEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~d------------------eEk~~~LE~QLKEa~~QLqh 443 (623)
.++++.-....+-++-+...++..-.+++.++...-+...+- ++..-..|.++...+ -.|
T Consensus 1110 ~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr--~~~ 1187 (1930)
T KOG0161|consen 1110 EEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELR--KKH 1187 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHH
Confidence 666665555555555555555555555555544332221100 112222223332222 112
Q ss_pred hhhhhHhHH---HHH---hhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHH
Q 006984 444 AKVSSEASQ---EQQ---SMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESS 517 (623)
Q Consensus 444 A~asaEas~---eqQ---~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~s 517 (623)
+..+++-.. .-| .++--.=+++..-+.+|...+.....+-..+|.+|..+...+.+|...+.-+..-+.+|=.+
T Consensus 1188 ~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q 1267 (1930)
T KOG0161|consen 1188 ADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAK 1267 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222221111 000 00111223444455555566665555556666777644444445555554444443333222
Q ss_pred HHHHhHH---HHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 006984 518 LNRANIE---KAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (623)
Q Consensus 518 l~kA~q~---k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t 574 (623)
..+-..+ -...+.+++.-..-+-+....+..+++.++.|+.....+.-.++..+.+.
T Consensus 1268 ~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l 1327 (1930)
T KOG0161|consen 1268 RSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQL 1327 (1930)
T ss_pred HHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222211 12226666666667777777788888888888888877777777766655
No 15
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.33 E-value=0.0029 Score=79.33 Aligned_cols=100 Identities=15% Similarity=0.210 Sum_probs=51.9
Q ss_pred HHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHH-HHHHHHHh---HHHHhh-------H
Q 006984 461 AIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL-ESSLNRAN---IEKAAS-------A 529 (623)
Q Consensus 461 ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksL-E~sl~kA~---q~k~~t-------l 529 (623)
.|+.+..-|.||..+++.-+....-+|.+-. +|..||..+...|... .....+.. .++.++ -
T Consensus 1098 ~i~eL~~~i~el~e~le~er~~r~K~ek~r~-------dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~le 1170 (1930)
T KOG0161|consen 1098 QIKELEARIKELEEELEAERASRAKAERQRR-------DLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLE 1170 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555444444444444444 5555555555555543 11111111 111111 3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006984 530 KEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL 567 (623)
Q Consensus 530 Keae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L 567 (623)
++.......+..+-.+++..+..|..|+-.++.....+
T Consensus 1171 ee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~l 1208 (1930)
T KOG0161|consen 1171 EETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKL 1208 (1930)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777777888888888888888777555444
No 16
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.26 E-value=0.0053 Score=73.98 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=33.2
Q ss_pred hhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 006984 479 AESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (623)
Q Consensus 479 AE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~t 528 (623)
.+.+....+.++-.|-..|+.--+|...+..++..|....+.....+...
T Consensus 947 ~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l 996 (1163)
T COG1196 947 LEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKL 996 (1163)
T ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666777778887777777777777777766655555444443
No 17
>PRK03918 chromosome segregation protein; Provisional
Probab=98.16 E-value=0.032 Score=64.43 Aligned_cols=35 Identities=11% Similarity=0.221 Sum_probs=19.0
Q ss_pred HHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhh
Q 006984 459 YSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVL 493 (623)
Q Consensus 459 y~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~L 493 (623)
|.++.....-+.+++.++.....|.+..+.++.-|
T Consensus 548 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 582 (880)
T PRK03918 548 LEKLEELKKKLAELEKKLDELEEELAELLKELEEL 582 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444455555555556666666666666644
No 18
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.16 E-value=0.004 Score=73.00 Aligned_cols=275 Identities=23% Similarity=0.296 Sum_probs=169.2
Q ss_pred cccchhchhHHHHHHHhHHHHHhh----------hhHHHHHhhcC--ChhHHH-HHHHHHHHHHHHHHHHHHHHHHhHhh
Q 006984 297 LNGSLQRESELKSKLGDFIEQLKA----------KDMVLQKLEST--KNSEVL-TMKEKVKSLEEQLKESEIRLQNANAC 363 (623)
Q Consensus 297 L~~s~~REsel~sKL~~~~eqL~~----------k~~~lekl~~s--~esEv~-sLqkKvksLE~qLdes~eQL~~A~ak 363 (623)
|.-+..-|-+|+..+.+..|.|+. |=.+|+++.-- .-.|+. -+..+...|+++|.........|.+-
T Consensus 219 l~saskte~eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ 298 (1243)
T KOG0971|consen 219 LPSASKTEEELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEA 298 (1243)
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555556556665555553 12233332211 223443 36677888888888888888777766
Q ss_pred HhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcC----CCCc----c---hhhhhHHH
Q 006984 364 FQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN----NDSN----T---KKVGILEN 432 (623)
Q Consensus 364 lEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesr----s~~d----e---Ek~~~LE~ 432 (623)
-+..-.++++..--|+.+--+-+=||+|+++-...++-+.+-++|++-.+-.|+.- |+.. . .+++..-.
T Consensus 299 ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~ 378 (1243)
T KOG0971|consen 299 KERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNA 378 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHH
Confidence 66677799999999999999999999999999999999999999999998888742 2211 1 22233333
Q ss_pred HHHHHHHHHHHhhhhhHhHHH------HHhhhHHHHHhHHHHHHHHhhhhhhhhhh----------hhhhhhhhhhhccc
Q 006984 433 QLRDLEIQLQQAKVSSEASQE------QQSMLYSAIWDMETLIEDLKSKVSKAESK----------TESVEEQCIVLSED 496 (623)
Q Consensus 433 QLKEa~~QLqhA~asaEas~e------qQ~mky~ei~dme~vIEdLk~Kl~rAE~R----------aE~aEsKc~~Lse~ 496 (623)
.||++=..|.- -+|.+-+. .-.+|.+++.-+..+-|-|+.++.-||.- |=.||.=...||+.
T Consensus 379 rLKdalVrLRD--lsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdk 456 (1243)
T KOG0971|consen 379 RLKDALVRLRD--LSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDK 456 (1243)
T ss_pred HHHHHHHHHHh--cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhh
Confidence 35544333321 11111111 11223333333333333333333333322 12466777889999
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh-----------------HHHHHHhHHHHHHHHH-------HHHHHHHH
Q 006984 497 NFELKNKQSFMRDKIKILESSLNRANIEKAAS-----------------AKEVNHRTKLMMEMVM-------QLATQREL 552 (623)
Q Consensus 497 N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~t-----------------lKeae~Rak~aE~lV~-------KL~~Erdr 552 (623)
|++|++-++-++.-+.+||+-.+--.|--+.- .|++..|...+..+|- |.-.-+..
T Consensus 457 nlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~ 536 (1243)
T KOG0971|consen 457 NLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAH 536 (1243)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999987554332222211 5677777766665543 33334456
Q ss_pred HHHHHHHHHHhhhHHHHHHhh
Q 006984 553 IQKQVYSLTSENKLLVEKLQY 573 (623)
Q Consensus 553 Le~ql~s~keenK~L~ekld~ 573 (623)
|++||--+++.+-...++.++
T Consensus 537 Lqdqlqe~~dq~~Sseees~q 557 (1243)
T KOG0971|consen 537 LQDQLQELTDQQESSEEESQQ 557 (1243)
T ss_pred HHHHHHHHHhhhhhhHHHhcC
Confidence 777777777776666666554
No 19
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.10 E-value=0.035 Score=69.54 Aligned_cols=293 Identities=20% Similarity=0.232 Sum_probs=174.2
Q ss_pred hhhhHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchh
Q 006984 226 RELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRES 305 (623)
Q Consensus 226 ~eldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~~s~~REs 305 (623)
+..-|++.+...+.-...++..| ..++......-+|+=-..|.++.+++.-..+-.|-+.+|..+.-..++=.
T Consensus 655 ~~~~l~e~~~~l~~ev~~ir~~l-------~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~ 727 (1822)
T KOG4674|consen 655 NLKKLQEDFDSLQKEVTAIRSQL-------EKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVH 727 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433 34555666677888888999999999999999999999988887777777
Q ss_pred HHHHHHHhHHHHHhhhhHHHHHhhcCC----------hhHHHHHHHHHHHHHHHHHHHHHH-------------------
Q 006984 306 ELKSKLGDFIEQLKAKDMVLQKLESTK----------NSEVLTMKEKVKSLEEQLKESEIR------------------- 356 (623)
Q Consensus 306 el~sKL~~~~eqL~~k~~~lekl~~s~----------esEv~sLqkKvksLE~qLdes~eQ------------------- 356 (623)
.+.+-|-.|-+.++.-+..+..|.+.+ -.|+..|......|--.++..+.+
T Consensus 728 ~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i 807 (1822)
T KOG4674|consen 728 TLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRI 807 (1822)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888777777776651 123333333333333223222222
Q ss_pred ------HHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhH
Q 006984 357 ------LQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGIL 430 (623)
Q Consensus 357 ------L~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~L 430 (623)
|+.++.++ ++++..+...+..+.-.+..|..+..+.......+-..+......+..|+. ++..|
T Consensus 808 ~eL~~el~~lk~kl---q~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~-------k~~eL 877 (1822)
T KOG4674|consen 808 KELERELQKLKKKL---QEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEI-------KLSEL 877 (1822)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 22222221 334444444555555566666666666666666666666666666666666 47778
Q ss_pred HHHHHHHHHHHHH--hhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHH
Q 006984 431 ENQLRDLEIQLQQ--AKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMR 508 (623)
Q Consensus 431 E~QLKEa~~QLqh--A~asaEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~ 508 (623)
+++|+..+.|... ++.+.++..- +-+++...+-=+++|+.+|-.|.. ++- .|.
T Consensus 878 ~k~l~~~~~~~~~l~~~~~~~d~~~----~~~~Lr~~~eq~~~l~~~L~~a~s-------~i~--------------~yq 932 (1822)
T KOG4674|consen 878 EKRLKSAKTQLLNLDSKSSNEDATI----LEDTLRKELEEITDLKEELTDALS-------QIR--------------EYQ 932 (1822)
T ss_pred HHHHHHhHHHHhhccccchhhhhhh----hhHHHHHHHHHHHHHHHHHHHHHH-------HHH--------------HHH
Confidence 8888877766543 3333444443 455666666666666666655544 233 444
Q ss_pred hhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006984 509 DKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSL 560 (623)
Q Consensus 509 ~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~ 560 (623)
.-..+++.++..-+.+=+.|.++++.|.+--..=++.|..++-.|+.++..+
T Consensus 933 e~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l 984 (1822)
T KOG4674|consen 933 EEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENL 984 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555556655555555555555555544444444444433
No 20
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.04 E-value=0.015 Score=72.25 Aligned_cols=61 Identities=10% Similarity=0.100 Sum_probs=35.2
Q ss_pred ccccchHHHHHHHHHHHHhhhhhhhHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHH
Q 006984 205 SKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVV 265 (623)
Q Consensus 205 ~~mqt~eqqR~iLrMLekSla~eldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~ 265 (623)
-=|.+++++|.++-=.=+-=.+--...++|.....+-.++...+...+.....|+..+...
T Consensus 273 d~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA 333 (1486)
T PRK04863 273 DYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAA 333 (1486)
T ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3388899888776443121133334455555555566666666666666666666555544
No 21
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.01 E-value=0.012 Score=64.30 Aligned_cols=127 Identities=10% Similarity=0.176 Sum_probs=74.7
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhHhHH---HHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhH
Q 006984 424 TKKVGILENQLRDLEIQLQQAKVSSEASQ---EQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFEL 500 (623)
Q Consensus 424 eEk~~~LE~QLKEa~~QLqhA~asaEas~---eqQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~EL 500 (623)
..++..|+.++...+.|+......-.... .+-......+......|...++.+.....+....+.++.-|...+.++
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~ 377 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDN 377 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhch
Confidence 34555555555555555544443333221 211223344555555666666777667677777777777777777789
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhHHHHhh------HHHHHHhHHHHHHHHHHHHHHH
Q 006984 501 KNKQSFMRDKIKILESSLNRANIEKAAS------AKEVNHRTKLMMEMVMQLATQR 550 (623)
Q Consensus 501 eEEL~~l~~~lksLE~sl~kA~q~k~~t------lKeae~Rak~aE~lV~KL~~Er 550 (623)
+++|..+..+++.+.........++..+ +++.+.|..+....+..+....
T Consensus 378 ~~~l~~l~~~l~~~~~~~~~~~ke~~~~~~i~~~~~~~g~~~~i~~~~l~~~n~~~ 433 (562)
T PHA02562 378 AEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKDSGIKASIIKKYIPYFNKQI 433 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 9999999888888877766665555444 4555555444444444443333
No 22
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.88 E-value=0.0008 Score=63.64 Aligned_cols=139 Identities=27% Similarity=0.274 Sum_probs=105.3
Q ss_pred HHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhh
Q 006984 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSM 457 (623)
Q Consensus 378 IelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaEas~eqQ~m 457 (623)
++-|+-+.+.|..|+..+++++..+...+.+.+.++..|.. |+..||.+|-.+..+|..++..++.+....+
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~-------K~~~lE~eld~~~~~l~~~k~~lee~~~~~~- 73 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQK-------KNQQLEEELDKLEEQLKEAKEKLEESEKRKS- 73 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-
Confidence 56788899999999999999999999999999999999987 4788888888888888887777777754111
Q ss_pred hHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHH
Q 006984 458 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTK 537 (623)
Q Consensus 458 ky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak 537 (623)
.-+.+.| ++. -|++||.-...+|+..... +.++..++.
T Consensus 74 ~~E~l~r------------------------riq-------~LEeele~ae~~L~e~~ek-----------l~e~d~~ae 111 (143)
T PF12718_consen 74 NAEQLNR------------------------RIQ-------LLEEELEEAEKKLKETTEK-----------LREADVKAE 111 (143)
T ss_pred hHHHHHh------------------------hHH-------HHHHHHHHHHHHHHHHHHH-----------HHHHHHHhH
Confidence 0111222 333 4555555554455433222 567778899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006984 538 LMMEMVMQLATQRELIQKQVYSLTSENKL 566 (623)
Q Consensus 538 ~aE~lV~KL~~ErdrLe~ql~s~keenK~ 566 (623)
-++|-|..|..+++.++..+-.+..+|+.
T Consensus 112 ~~eRkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 112 HFERKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888875
No 23
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.83 E-value=0.03 Score=67.39 Aligned_cols=254 Identities=20% Similarity=0.169 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHHHhcc-chHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHH
Q 006984 258 MEEAAEVVWGRFLEAE-NSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEV 336 (623)
Q Consensus 258 lEE~~~~~~er~~EAE-Na~EvL~g~skel~gkLq~~qf~L~~s~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv 336 (623)
+|+.|+.|-+.++-.+ -.++-|+|.-++-+.+|..+..=|+-... ++ +--++| .+++
T Consensus 1494 i~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~---di-----~ra~~L--------------~s~A 1551 (1758)
T KOG0994|consen 1494 IEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKG---DI-----ARAENL--------------QSEA 1551 (1758)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhh---hH-----HHHHHH--------------HHHH
Confidence 4455555555544433 23455666666666666655544432110 00 000111 2556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 006984 337 LTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 416 (623)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~L 416 (623)
..-.++...+..+.+...+.|+.|....-.++.-|..-.+-|++....|.+++++...|+.++.-++++..+|.+.+..|
T Consensus 1552 ~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~l 1631 (1758)
T KOG0994|consen 1552 ERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEEL 1631 (1758)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777888888888888877777777788888888999999999999999999999999999999999998888
Q ss_pred hcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccc
Q 006984 417 KGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSED 496 (623)
Q Consensus 417 esrs~~deEk~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~ 496 (623)
+......+.-+...++-.--++.+.+.|+.-.+.-+. .|+.+.+ ++++--.-..-|..|||.
T Consensus 1632 k~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~----~~~~~~~---l~~~r~~g~~~ar~rAe~----------- 1693 (1758)
T KOG0994|consen 1632 KHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQK----YYELVDR---LLEKRMEGSQAARERAEQ----------- 1693 (1758)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH---HHHHHhhcchhHHHHHHH-----------
Confidence 8765433333333333333333233333322221111 3333322 223111222233333332
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006984 497 NFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENK 565 (623)
Q Consensus 497 N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK 565 (623)
|+.+.+. |-...++|..-+|+++.-+.--++-+...+.++.+|+..+-++....+
T Consensus 1694 ----------L~~eA~~----Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~ 1748 (1758)
T KOG0994|consen 1694 ----------LRTEAEK----LLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHIN 1748 (1758)
T ss_pred ----------HHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 2222222 223334555566777766666666667777777777777776654443
No 24
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.81 E-value=0.24 Score=62.59 Aligned_cols=289 Identities=22% Similarity=0.256 Sum_probs=139.2
Q ss_pred HHHHHHhh-----------hhhhhHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHH----------HHHHhccch
Q 006984 217 LRMLEKSL-----------ARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVW----------GRFLEAENS 275 (623)
Q Consensus 217 LrMLekSl-----------a~eldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~----------er~~EAENa 275 (623)
|.||++.| +|--+|..-+..-.+....+...|++...-...++-.+..+- .|+.--
T Consensus 691 le~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e--- 767 (1822)
T KOG4674|consen 691 LENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQE--- 767 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 66777665 555667777777777888888888887777777766554432 222211
Q ss_pred HHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcC---ChhHHHHHHHHHHHHHHHHHH
Q 006984 276 AEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST---KNSEVLTMKEKVKSLEEQLKE 352 (623)
Q Consensus 276 ~EvL~g~skel~gkLq~~qf~L~~s~~REsel~sKL~~~~eqL~~k~~~lekl~~s---~esEv~sLqkKvksLE~qLde 352 (623)
.+-|...-..++..+-.+|+..+-...-++..+.++++-+..|.. .|.++... ..+++.+++ ..+..++..
T Consensus 768 ~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~---el~~lk~klq~~~~~~r~l~---~~~~~~l~~ 841 (1822)
T KOG4674|consen 768 LEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELER---ELQKLKKKLQEKSSDLRELT---NSLEKQLEN 841 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---hhhhhHHHH
Confidence 122223333444444455555555556667777777766666652 23332221 122222221 122222222
Q ss_pred HHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCC----------
Q 006984 353 SEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDS---------- 422 (623)
Q Consensus 353 s~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~---------- 422 (623)
+.-+ |.++...+..+...+..++++++..+.++..|.+--....-....+.+.+..
T Consensus 842 ~~~~--------------i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~L 907 (1822)
T KOG4674|consen 842 AQNL--------------VDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTL 907 (1822)
T ss_pred HHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHH
Confidence 2222 2233333333333333333333333333333333333333333333221000
Q ss_pred --cchhhhhHHHHHHHHHHHHHHhh---hhhHhHHHHHhhhHHHHH-hHHHHHHHHhhhhhhhhhhhhhhhhhhhhhc--
Q 006984 423 --NTKKVGILENQLRDLEIQLQQAK---VSSEASQEQQSMLYSAIW-DMETLIEDLKSKVSKAESKTESVEEQCIVLS-- 494 (623)
Q Consensus 423 --deEk~~~LE~QLKEa~~QLqhA~---asaEas~eqQ~mky~ei~-dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Ls-- 494 (623)
..+++..|..+|+-+..+..+=+ .+.+.+-.+=.-.|++.. ..++=|+.+..++--.|.|.-..+..|.-|.
T Consensus 908 r~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e 987 (1822)
T KOG4674|consen 908 RKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREE 987 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12345555555555554433333 222222221111233222 2223344444444434433333333333332
Q ss_pred ---------cchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 006984 495 ---------EDNFELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (623)
Q Consensus 495 ---------e~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~t 528 (623)
..++.+..+++.+++.++++.....+|+.....+
T Consensus 988 ~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~ 1030 (1822)
T KOG4674|consen 988 LELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDL 1030 (1822)
T ss_pred HhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888999999999999999999998877776
No 25
>PRK03918 chromosome segregation protein; Provisional
Probab=97.81 E-value=0.13 Score=59.54 Aligned_cols=8 Identities=0% Similarity=0.522 Sum_probs=3.4
Q ss_pred cCCccccc
Q 006984 74 GDDLETLV 81 (623)
Q Consensus 74 ~~~~E~~~ 81 (623)
-.+|..+.
T Consensus 134 Qg~~~~~~ 141 (880)
T PRK03918 134 QGEIDAIL 141 (880)
T ss_pred ccchHHHh
Confidence 34444443
No 26
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.80 E-value=0.033 Score=65.11 Aligned_cols=298 Identities=17% Similarity=0.217 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHH---------------HHHhHHHHHhhhhHH
Q 006984 260 EAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKS---------------KLGDFIEQLKAKDMV 324 (623)
Q Consensus 260 E~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~~s~~REsel~s---------------KL~~~~eqL~~k~~~ 324 (623)
+.+++.--|.+.|+|...=|+..--.+..++ +.-++..||-+.. -.--.+++|.+.++.
T Consensus 34 es~edlk~r~L~aeniiqdlrserdalhe~l------vdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQ 107 (1265)
T KOG0976|consen 34 ESHEDLKKRLLDAENIIQDLRSERDALHESL------VDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQ 107 (1265)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHHH------HHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4566777788888888887776655555544 2223333333322 222223333333333
Q ss_pred HHHhhcC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHH----HHH
Q 006984 325 LQKLEST---KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAES----AEE 397 (623)
Q Consensus 325 lekl~~s---~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~t----Aes 397 (623)
+--|.-+ .++|...||.-+..++.++++.+..|.+.++.++.-+.++++-.+-|.-.=+++-..-..+.. -.+
T Consensus 108 iriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~t 187 (1265)
T KOG0976|consen 108 IRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQT 187 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHH
Confidence 3222222 366677777777777777777777777777776666666666666665555554443333322 223
Q ss_pred HHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhH---HHHHhhhHHHHHhHHHHHHHHhh
Q 006984 398 KVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEAS---QEQQSMLYSAIWDMETLIEDLKS 474 (623)
Q Consensus 398 Kle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaEas---~eqQ~mky~ei~dme~vIEdLk~ 474 (623)
|++++..-|..+++.++-++......++|. ++=.+..+.. -+...+.. ...|. ...++---.+|+++..
T Consensus 188 kl~e~~~en~~le~k~~k~~e~~~~nD~~s-le~~~~q~~t-----q~vl~ev~QLss~~q~--ltp~rk~~s~i~E~d~ 259 (1265)
T KOG0976|consen 188 KLAEANREKKALEEKLEKFKEDLIEKDQKS-LELHKDQENT-----QKVLKEVMQLSSQKQT--LTPLRKTCSMIEEQDM 259 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHH-HHHHHHHHHH-----HHHHHHHHHHHHhHhh--hhhHhhhhHHHHHHHH
Confidence 344444444444444554544433222221 1111110000 00111111 11111 1111111134443333
Q ss_pred hhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 006984 475 KVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQ 554 (623)
Q Consensus 475 Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe 554 (623)
++.- -+...|.|-.-|--.|.-|..||+...-.++-+..-|+...+---...-+++.-+++..--+++|..++-+|.
T Consensus 260 ~lq~---sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadir 336 (1265)
T KOG0976|consen 260 DLQA---SAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIR 336 (1265)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 2334455555555667788888888888888888888777666666666666667777777777777776666
Q ss_pred HHHHHHHHhhhHHHHHHhhc
Q 006984 555 KQVYSLTSENKLLVEKLQYS 574 (623)
Q Consensus 555 ~ql~s~keenK~L~ekld~t 574 (623)
-.|.-.+.+-..+.+++...
T Consensus 337 c~LlEarrk~egfddk~~eL 356 (1265)
T KOG0976|consen 337 CALLEARRKAEGFDDKLNEL 356 (1265)
T ss_pred HHHHHHHHhhcchhHHHHHH
Confidence 66666666666666655544
No 27
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.80 E-value=0.005 Score=61.71 Aligned_cols=183 Identities=19% Similarity=0.294 Sum_probs=93.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHH-------HHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhh
Q 006984 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE-------QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT 405 (623)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~-------EVaaLerrIelLKEel~rAEsRa~tAesKle~LseT 405 (623)
+.+|.+|..++..||.+++.+++.+..|..++++.+. .+..|+++.+.+++.+...+..+..|-.--+.+-.-
T Consensus 3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK 82 (205)
T KOG1003|consen 3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRK 82 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777777777777777766522 333455555555544444443333332222222222
Q ss_pred hHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhh---hhhHhHHHHHhhhHH-HHHhHHHHHHHHhhhhhhhhh
Q 006984 406 NLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAK---VSSEASQEQQSMLYS-AIWDMETLIEDLKSKVSKAES 481 (623)
Q Consensus 406 NdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~---asaEas~eqQ~mky~-ei~dme~vIEdLk~Kl~rAE~ 481 (623)
-++--+.|-++++.=-..++|++.=|.++++...++.+-. .+...+.+ +|. ..-.-...|..|-.|+--|++
T Consensus 83 ~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee----~~~q~~d~~e~~ik~ltdKLkEaE~ 158 (205)
T KOG1003|consen 83 YEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEE----KLEQKEEKYEEELKELTDKLKEAET 158 (205)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHHhhhhh
Confidence 2333344444444322235555555555555554444332 22223333 222 112222344444478889999
Q ss_pred hhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHH
Q 006984 482 KTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLN 519 (623)
Q Consensus 482 RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~ 519 (623)
||+.+|-.+.-|-.+=-+|+..+.....+-.++..-|+
T Consensus 159 rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD 196 (205)
T KOG1003|consen 159 RAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELD 196 (205)
T ss_pred hHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999988884444444444444444444444433333
No 28
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.70 E-value=0.15 Score=57.19 Aligned_cols=329 Identities=19% Similarity=0.224 Sum_probs=159.7
Q ss_pred hHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccc-----hHHHHhhhhHHHHhhhhHHhhhcccchhc
Q 006984 229 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAEN-----SAEVLMGISKEMLGRFQIVQFNLNGSLQR 303 (623)
Q Consensus 229 dLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAEN-----a~EvL~g~skel~gkLq~~qf~L~~s~~R 303 (623)
+.-+.|..++.+.++|+.+|..+..+...-.+.++..--|+-+.+. ++...+-.+.....+....-..|...-.-
T Consensus 59 ~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~E 138 (522)
T PF05701_consen 59 QALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELESAREQYASAVAELDSVKQE 138 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677789999999999998887777777776666556554432 12222222223333333333333322211
Q ss_pred hhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHH--------------
Q 006984 304 ESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE-------------- 369 (623)
Q Consensus 304 Esel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~-------------- 369 (623)
=.-++.-+.++. ..|+.++.+.... .+-...-.+++..|-.++...++-|.++......++.
T Consensus 139 L~~lr~e~~~~~---~~k~~A~~~aeea-~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~ 214 (522)
T PF05701_consen 139 LEKLRQELASAL---DAKNAALKQAEEA-VSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAE 214 (522)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111 1344555544444 3334445567777777777777777666544333311
Q ss_pred ----HHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCC----cchhhhhHHHHHHHHHHHH
Q 006984 370 ----QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDS----NTKKVGILENQLRDLEIQL 441 (623)
Q Consensus 370 ----EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~----deEk~~~LE~QLKEa~~QL 441 (623)
++..-+..++.|+.++ +.+...+.|+...+.-...|..+++.....-.. ...+...+...|.-....|
T Consensus 215 ~~~~~leeae~~l~~L~~e~----~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~EL 290 (522)
T PF05701_consen 215 EWEKELEEAEEELEELKEEL----EAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKEL 290 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHH
Confidence 2222333333333333 233333444444444444444444433331000 0122223333344444444
Q ss_pred HHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHH
Q 006984 442 QQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRA 521 (623)
Q Consensus 442 qhA~asaEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA 521 (623)
..++.........-+.+...+..+..=++..|..+.+...|...+...+. .|+.+|.-+++.|........++
T Consensus 291 e~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~-------~L~~eL~~~r~eLea~~~~e~~~ 363 (522)
T PF05701_consen 291 EEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVS-------SLEAELNKTRSELEAAKAEEEKA 363 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh-------hHHHHHHHHHHHHHHHHhhhcch
Confidence 45554444433322223444444444445555666666666666666666 88888888888887766655544
Q ss_pred hHHHHhh----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 006984 522 NIEKAAS----------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQ 572 (623)
Q Consensus 522 ~q~k~~t----------lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld 572 (623)
...-... +.++-.-+..+..=+.++..+++.....|.+...++.....++.
T Consensus 364 k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~e 424 (522)
T PF05701_consen 364 KEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAE 424 (522)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3221111 22333333444444455555555555555555555544444443
No 29
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.59 E-value=0.23 Score=56.45 Aligned_cols=107 Identities=20% Similarity=0.253 Sum_probs=56.7
Q ss_pred HHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcch----hhhhHHHHHHHHHHHHHHhh
Q 006984 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTK----KVGILENQLRDLEIQLQQAK 445 (623)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deE----k~~~LE~QLKEa~~QLqhA~ 445 (623)
......-.+..|++++-.++++++.+..+...+.+-- +.+...++|.+++-. -+..|-.||.++..+|.+++
T Consensus 277 ~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL----~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~ 352 (546)
T PF07888_consen 277 QAQQLQQENEALKEQLRSAQEQLQASQQEAELLRKEL----SDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGR 352 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344555567788888888888888887776654432 222223333222211 13455566666665665544
Q ss_pred hhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhh
Q 006984 446 VSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKT 483 (623)
Q Consensus 446 asaEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~Ra 483 (623)
+.-.++++... ..+.-...-|++|+..+.+++...
T Consensus 353 --~q~~qEk~~l~-~~~e~~k~~ie~L~~el~~~e~~l 387 (546)
T PF07888_consen 353 --SQWAQEKQALQ-HSAEADKDEIEKLSRELQMLEEHL 387 (546)
T ss_pred --HHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 22222333312 223333445777888777776544
No 30
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.57 E-value=0.31 Score=57.45 Aligned_cols=87 Identities=21% Similarity=0.287 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 006984 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (623)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELere 412 (623)
+.+..-||--|-.|--.|+....++....+.++..+++.+.+...|.++++.+...+.++.....|++-|..+.-+=.+.
T Consensus 335 e~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~q 414 (775)
T PF10174_consen 335 EQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQ 414 (775)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555555666666666666666666666666666666666666666666555544444
Q ss_pred hhhhhcC
Q 006984 413 INFLKGN 419 (623)
Q Consensus 413 lk~Lesr 419 (623)
+..++.|
T Consensus 415 l~~~k~R 421 (775)
T PF10174_consen 415 LDEEKER 421 (775)
T ss_pred HHHHHHH
Confidence 4444433
No 31
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.47 E-value=0.28 Score=55.74 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHH
Q 006984 430 LENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIE 470 (623)
Q Consensus 430 LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme~vIE 470 (623)
+..++...+.||+.+.....++..+=..+-.+++++-++=+
T Consensus 281 ~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RD 321 (546)
T PF07888_consen 281 LQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRD 321 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666666666665544445556666555543
No 32
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.41 E-value=0.61 Score=56.91 Aligned_cols=315 Identities=18% Similarity=0.172 Sum_probs=181.3
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhh-----HHHHhhhhHHhhhcccchhchhHHHHHHH-hHHH--
Q 006984 245 KLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGIS-----KEMLGRFQIVQFNLNGSLQRESELKSKLG-DFIE-- 316 (623)
Q Consensus 245 k~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~s-----kel~gkLq~~qf~L~~s~~REsel~sKL~-~~~e-- 316 (623)
.-++.+++.|+..||-.-.. ...|+..+|-+=.+++.. -+...|+-..+..+.+..--.-++..|.. .+-+
T Consensus 287 ~~~~k~~e~ek~~lE~~k~~-al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~ 365 (1293)
T KOG0996|consen 287 ENRVKLVEKEKKALEGPKNE-ALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEV 365 (1293)
T ss_pred HHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHH
Confidence 34455678888888876544 456888888655444432 22334444444444433322223333332 1111
Q ss_pred -HHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHH
Q 006984 317 -QLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESA 395 (623)
Q Consensus 317 -qL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tA 395 (623)
..++.+..+......-...+.++++|.+.+|.+--.-.++|.++..+....+.++-...+.+.+++-..+++..-.+.-
T Consensus 366 ~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~ 445 (1293)
T KOG0996|consen 366 EKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKC 445 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHH
Confidence 1111111111111111336667888888888888888888888877777777777777777777777777777666666
Q ss_pred HHHHHHHhhh----hHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHH
Q 006984 396 EEKVTQLTDT----NLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIED 471 (623)
Q Consensus 396 esKle~LseT----NdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme~vIEd 471 (623)
.++...|++- +-+|...+..|+.++....++...+|+.|.-...|+..|+.=..-+.-+-.++......-..=+++
T Consensus 446 ~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~ 525 (1293)
T KOG0996|consen 446 QTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEE 525 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655544 444555566677777667777788888888777777777766555554444444444444455566
Q ss_pred HhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHH
Q 006984 472 LKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRE 551 (623)
Q Consensus 472 Lk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~Erd 551 (623)
||++|....++. .+..-+|.-+...+. .-.++-..--|++..-.+...-+.++|..-|+
T Consensus 526 lk~~L~~~~~~~--------------~e~~~~l~~~k~~l~-------~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rq 584 (1293)
T KOG0996|consen 526 LKGKLLASSESL--------------KEKKTELDDLKEELP-------SLKQELKEKEKELPKLRKEERNLKSQLNKLRQ 584 (1293)
T ss_pred HHHHHHHHHHHH--------------HHHHHHHHHHHHhhh-------hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 666666655431 133333333333333 33333333345555555666667777777776
Q ss_pred HHH---HHHHHHHHhhhHHH--HHHhhcCCCCcee
Q 006984 552 LIQ---KQVYSLTSENKLLV--EKLQYSGKSSSAT 581 (623)
Q Consensus 552 rLe---~ql~s~keenK~L~--ekld~t~~~~~~~ 581 (623)
|++ ..+++...+++.|. -.++..++-+.|+
T Consensus 585 rveE~ks~~~~~~s~~kVl~al~r~kesG~i~Gf~ 619 (1293)
T KOG0996|consen 585 RVEEAKSSLSSSRSRNKVLDALMRLKESGRIPGFY 619 (1293)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCCCCccc
Confidence 665 45667788888873 3456666556654
No 33
>PRK01156 chromosome segregation protein; Provisional
Probab=97.38 E-value=0.51 Score=55.38 Aligned_cols=26 Identities=8% Similarity=0.070 Sum_probs=13.5
Q ss_pred hHhhhhhhHhhHHHHHHHHHHHHHhh
Q 006984 146 MEKKLHDCEGSLKESQEHVSELKMQS 171 (623)
Q Consensus 146 ~~~kL~~~~~sLkq~~e~~~ei~~qs 171 (623)
++..|.+....++.....+..++.+.
T Consensus 195 ~e~eL~~~~~~i~el~~~~~~l~~~i 220 (895)
T PRK01156 195 SNLELENIKKQIADDEKSHSITLKEI 220 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555554444
No 34
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.26 E-value=0.55 Score=53.11 Aligned_cols=128 Identities=23% Similarity=0.290 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 006984 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (623)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELere 412 (623)
++++..+++++......+... .+..|.+.++....+|.+|--.++--...-...+.........+..+.+.|.++..+
T Consensus 255 ~~~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~E 332 (569)
T PRK04778 255 EKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEE 332 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 455666666655555444433 345555555555666666666666555566667777777788888888888999999
Q ss_pred hhhhhcC---CCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHH
Q 006984 413 INFLKGN---NDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME 466 (623)
Q Consensus 413 lk~Lesr---s~~deEk~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme 466 (623)
+..|..+ +-.+.+++..++.+|++...++......+..... -|+.+.+..
T Consensus 333 i~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~----~ysel~e~l 385 (569)
T PRK04778 333 IDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEI----AYSELQEEL 385 (569)
T ss_pred HHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----CHHHHHHHH
Confidence 8888776 2335677888888888887666654433333322 355554443
No 35
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.17 E-value=0.88 Score=53.86 Aligned_cols=198 Identities=21% Similarity=0.269 Sum_probs=124.0
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHh-------hHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHH
Q 006984 324 VLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANA-------CFQTSQEQLNEMDNFIESLKESLYGAESRAESAE 396 (623)
Q Consensus 324 ~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~a-------klEesE~EVaaLerrIelLKEel~rAEsRa~tAe 396 (623)
+++++...+++-+.++-+=+..+|+++.-......-+.+ .++...+....|.+++.-++-+|.+..+-+....
T Consensus 228 alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~q 307 (775)
T PF10174_consen 228 ALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQ 307 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445655555555555555555555444333333 3344456777889999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHhhhhhcCCCCcchh-------hhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhh---HHHHHhHH
Q 006984 397 EKVTQLTDTNLELSEEINFLKGNNDSNTKK-------VGILENQLRDLEIQLQQAKVSSEASQEQQSML---YSAIWDME 466 (623)
Q Consensus 397 sKle~LseTNdELerelk~Lesrs~~deEk-------~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mk---y~ei~dme 466 (623)
++|.-++..+.+...-+.+|+..-..-+.+ ++.|-..|.+...|+..+-+..+...+.-+-. +..+.|+.
T Consensus 308 t~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~ 387 (775)
T PF10174_consen 308 TRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDML 387 (775)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999877777776542222222 45566667777777777776666665432222 22333444
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHH---------HHHHHHHHHhHHHHhhHHH
Q 006984 467 TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIK---------ILESSLNRANIEKAASAKE 531 (623)
Q Consensus 467 ~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lk---------sLE~sl~kA~q~k~~tlKe 531 (623)
-+.+ .|+.+.-.+.|+.+.... +=...|.....+|. .+-..+++|...++...+.
T Consensus 388 d~~e---~ki~~Lq~kie~Lee~l~-------ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~ 451 (775)
T PF10174_consen 388 DKKE---RKINVLQKKIENLEEQLR-------EKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQER 451 (775)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 4444 666666666666665554 55555555555555 5667777888777777333
No 36
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.10 E-value=1.3 Score=54.44 Aligned_cols=233 Identities=22% Similarity=0.304 Sum_probs=137.6
Q ss_pred hHHHHHHHHHHHHhhhhhhh-----HHHhhHHHhhhHHHHHhhhhhh---hHH---HHHHHHHHHHHHHHHHhccchHHH
Q 006984 210 ADQQRHILRMLEKSLARELD-----LEKKISELNQNEEQLKLKLHHT---EQV---AFRMEEAAEVVWGRFLEAENSAEV 278 (623)
Q Consensus 210 ~eqqR~iLrMLekSla~eld-----LEkkL~~s~~~eeeLk~kL~~~---eqe---~~~lEE~~~~~~er~~EAENa~Ev 278 (623)
-++.++-++-|+..+..+.. +.........-...|+..+++. +++ ....+.+.+..-+..-.+......
T Consensus 415 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 494 (1201)
T PF12128_consen 415 REQIEEEYQALEQELRQQSQEQLEELQEQREQLKSELAELKQQLKNPQYTEEEKEQLEQADKRLEQAQEQQNQAQQAVEE 494 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777778777765433 1112222222233344444432 222 222333334444555556666666
Q ss_pred HhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhh-hhHHHHHhhcC--------------------------
Q 006984 279 LMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKA-KDMVLQKLEST-------------------------- 331 (623)
Q Consensus 279 L~g~skel~gkLq~~qf~L~~s~~REsel~sKL~~~~eqL~~-k~~~lekl~~s-------------------------- 331 (623)
+......+....+..+..|.....+=.+++..+.....+|.. +++-++=|...
T Consensus 495 ~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~~p~We~tIGKVid~eLL~r~dL~P~l 574 (1201)
T PF12128_consen 495 LQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKNKPGWEQTIGKVIDEELLYRTDLEPQL 574 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhCCCcHHHHhHhhCCHHHhcCCCCCCee
Confidence 666677777777777777777766666777777777777763 22222222111
Q ss_pred -------------------ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhH
Q 006984 332 -------------------KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRA 392 (623)
Q Consensus 332 -------------------~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa 392 (623)
..++.....+ .|+.++.....+++.+....++.+..+...+..+..++.++..++..+
T Consensus 575 ~~~~~~dslyGl~LdL~~I~~pd~~~~ee---~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~ 651 (1201)
T PF12128_consen 575 VEDSGSDSLYGLSLDLSAIDVPDYAASEE---ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQEL 651 (1201)
T ss_pred cCCCcccccceeEeehhhcCCchhhcChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0122221111 566666677777777777777778888889999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhcC-CCCcchhhhhHHHHHHHHHHHHHHhh
Q 006984 393 ESAEEKVTQLTDTNLELSEEINFLKGN-NDSNTKKVGILENQLRDLEIQLQQAK 445 (623)
Q Consensus 393 ~tAesKle~LseTNdELerelk~Lesr-s~~deEk~~~LE~QLKEa~~QLqhA~ 445 (623)
.++..++..+-.....+..+....... -..-..++..++.+++..+.+++...
T Consensus 652 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~ 705 (1201)
T PF12128_consen 652 KQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQELEELL 705 (1201)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888888777777766544332 11123445555555555554444444
No 37
>PRK11637 AmiB activator; Provisional
Probab=97.09 E-value=0.52 Score=51.17 Aligned_cols=93 Identities=23% Similarity=0.330 Sum_probs=65.0
Q ss_pred hHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhH
Q 006984 305 SELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKES 384 (623)
Q Consensus 305 sel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEe 384 (623)
++++.+|++...++.... .++..+++++..++.+++..+.++..+..++...+.++..+++.|..++.+
T Consensus 43 ~~~~~~l~~l~~qi~~~~-----------~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~e 111 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKE-----------KSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNAS 111 (428)
T ss_pred hhhHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666665555433 445566677777777777777777777777777777888888888888888
Q ss_pred HHhhhhhHHHHHHHHHHHhhhhHH
Q 006984 385 LYGAESRAESAEEKVTQLTDTNLE 408 (623)
Q Consensus 385 l~rAEsRa~tAesKle~LseTNdE 408 (623)
+..++.++......+...-.+.-.
T Consensus 112 I~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 112 IAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877777776665544443
No 38
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.08 E-value=0.73 Score=55.11 Aligned_cols=299 Identities=21% Similarity=0.266 Sum_probs=151.4
Q ss_pred hHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHH
Q 006984 229 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELK 308 (623)
Q Consensus 229 dLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~~s~~REsel~ 308 (623)
||.-||.-.|..-.|=+.||--.+-.++.+|-.-+ ...|+.--|.+|.--.+|+.-=.
T Consensus 235 dLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqE----------------------fkSkim~qqa~Lqrel~raR~e~ 292 (1243)
T KOG0971|consen 235 DLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQE----------------------FKSKIMEQQADLQRELKRARKEA 292 (1243)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888888888888888888775433 22333333333332222222111
Q ss_pred HHHHhHHHHHh---------------hhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH-hhhHHHHH
Q 006984 309 SKLGDFIEQLK---------------AKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACF-QTSQEQLN 372 (623)
Q Consensus 309 sKL~~~~eqL~---------------~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~akl-EesE~EVa 372 (623)
.-+...-++.. .|+++=++.++- --||.++++++..||-+|.-.....++-..-. -.+--+.-
T Consensus 293 keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesL-Q~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfk 371 (1243)
T KOG0971|consen 293 KEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESL-QQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFK 371 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHH
Confidence 11111111111 123333333332 34556666666666666555444333211110 00122555
Q ss_pred hHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHH
Q 006984 373 EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQ 452 (623)
Q Consensus 373 aLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaEas~ 452 (623)
-++--+.-||+-+-|-.--...+..---.+.+-..-.+.++..|+...-.-..+++.+|.++...+.|+.-|- =||+..
T Consensus 372 qlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAl-GAE~MV 450 (1243)
T KOG0971|consen 372 QLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAAL-GAEEMV 450 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cHHHHH
Confidence 6777777888877764333333322222223322223333444433321124578899999999998887664 345555
Q ss_pred HHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchh----hHHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 006984 453 EQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNF----ELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (623)
Q Consensus 453 eqQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~----ELeEEL~~l~~~lksLE~sl~kA~q~k~~t 528 (623)
+|-.-+--.+.++-...||=.++++-++. ...+ |-|.|. +|-+||..+.+-.+.|+..-+.| .++
T Consensus 451 ~qLtdknlnlEekVklLeetv~dlEalee----~~EQ---L~Esn~ele~DLreEld~~~g~~kel~~r~~aa----qet 519 (1243)
T KOG0971|consen 451 EQLTDKNLNLEEKVKLLEETVGDLEALEE----MNEQ---LQESNRELELDLREELDMAKGARKELQKRVEAA----QET 519 (1243)
T ss_pred HHHHhhccCHHHHHHHHHHHHHHHHHHHH----HHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHH
Confidence 43322222333333333333334443332 1112 224554 45566666655555554433332 233
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006984 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTS 562 (623)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~ke 562 (623)
+=|-..-..-+-++|.+|+..+..+-||..+..+
T Consensus 520 ~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Ssee 553 (1243)
T KOG0971|consen 520 VYDRDQTIKKFRELVAHLQDQLQELTDQQESSEE 553 (1243)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 4444444555678999999999999998766443
No 39
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.98 E-value=0.56 Score=48.17 Aligned_cols=70 Identities=14% Similarity=0.210 Sum_probs=46.5
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhh---HHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006984 499 ELKNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNH----RTKLMMEMVMQLATQRELIQKQVYSLTSENKLLV 568 (623)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~k~~t---lKeae~----Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ 568 (623)
.+.+|++.++..+.+|+..++.....+... +.+.+. ...-....|..|..++..+..++.....+|..|.
T Consensus 213 ~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll 289 (312)
T PF00038_consen 213 SAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELL 289 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777777777666666555 333332 2344566677788888888888877777777763
No 40
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.92 E-value=1.5 Score=53.34 Aligned_cols=38 Identities=11% Similarity=0.054 Sum_probs=22.4
Q ss_pred HhhhHHHHHHhhcCCCC--ceeeeccCCCCCcceeeccCC
Q 006984 562 SENKLLVEKLQYSGKSS--SATMYNAGDTDDKELLINPTN 599 (623)
Q Consensus 562 eenK~L~ekld~t~~~~--~~~~~~~~~~~~~~~~~~~~~ 599 (623)
.....|-.=++..+.+. |.++...+.+-+-+..-+|.+
T Consensus 531 ~D~~~Lr~i~~~~~~~~~~ptIvvs~~~~~~y~~~~~p~~ 570 (1074)
T KOG0250|consen 531 KDARILRAIMRRLKIPGNRPTIVVSSFTPFDYSVGRNPGY 570 (1074)
T ss_pred hhHHHHHHHHHHcCCCCCCCcEEEecCCccccccccCCCC
Confidence 34444444455555553 666666677766666666665
No 41
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.83 E-value=0.00029 Score=82.56 Aligned_cols=181 Identities=23% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhh
Q 006984 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 417 (623)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Le 417 (623)
.+++.++-+..++++++.++..+....+.....+..+++++..|..++..+...+..|.--+..+..-.+++...+..|-
T Consensus 571 e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~ 650 (859)
T PF01576_consen 571 EAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELT 650 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666677766667676666666677888899999999999999998888888888888888888888877776
Q ss_pred cCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHH--------------------HhhhHH-HHHhHHHHHHHHhhhh
Q 006984 418 GNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQ--------------------QSMLYS-AIWDMETLIEDLKSKV 476 (623)
Q Consensus 418 srs~~deEk~~~LE~QLKEa~~QLqhA~asaEas~eq--------------------Q~mky~-ei~dme~vIEdLk~Kl 476 (623)
+...+-..-..-||..+.....+|+.+...+..+..+ .++... .=+.++.-|.||+.++
T Consensus 651 ~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl 730 (859)
T PF01576_consen 651 SQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARL 730 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543333333445555555555555555443333320 011111 1123446677777777
Q ss_pred hhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHH
Q 006984 477 SKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKE 531 (623)
Q Consensus 477 ~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKe 531 (623)
.-+|.-+-..= ..-++.+.+++..||..|+.-..+...+.|-
T Consensus 731 ~e~E~~~~~~~-------------k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k~ 772 (859)
T PF01576_consen 731 EEAEQSALKGG-------------KKQIAKLEARIRELEEELESEQRRRAEAQKQ 772 (859)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHhhhccc-------------ccHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77775322211 1235678888888888888776666666333
No 42
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.81 E-value=1.2 Score=54.60 Aligned_cols=197 Identities=20% Similarity=0.289 Sum_probs=123.5
Q ss_pred hhhHHhhhcccchhchhHHHHHHHhHHHHHhh----------hhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006984 289 RFQIVQFNLNGSLQRESELKSKLGDFIEQLKA----------KDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQ 358 (623)
Q Consensus 289 kLq~~qf~L~~s~~REsel~sKL~~~~eqL~~----------k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~ 358 (623)
++...+--++-...+.-.++++|+.+.-+.+- +..+++++-+...-+...++..+.+|+..+...+..|.
T Consensus 385 ~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~ 464 (1293)
T KOG0996|consen 385 KFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD 464 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555566665555544443 34444444444456777788888888887777777776
Q ss_pred HhHhhHhh----hHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHH
Q 006984 359 NANACFQT----SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQL 434 (623)
Q Consensus 359 ~A~aklEe----sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QL 434 (623)
.-..++.. ..+++-.++-....+..++-+|.++++.|++.+..|.......-+..-.|++ +|
T Consensus 465 e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~--------------~L 530 (1293)
T KOG0996|consen 465 EILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKG--------------KL 530 (1293)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH
Confidence 66666543 3668888888888899999999999999999999888776655544443333 22
Q ss_pred HHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHH
Q 006984 435 RDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL 514 (623)
Q Consensus 435 KEa~~QLqhA~asaEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksL 514 (623)
+ ++.+..++ +-..+.+....|.++|.++..+++..+..-..-. .|..-+.-++.++..+
T Consensus 531 -------~---~~~~~~~e----~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~-------~~~~~~~~~rqrveE~ 589 (1293)
T KOG0996|consen 531 -------L---ASSESLKE----KKTELDDLKEELPSLKQELKEKEKELPKLRKEER-------NLKSQLNKLRQRVEEA 589 (1293)
T ss_pred -------H---HHHHHHHH----HHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 2 12222333 4566888888888888887777765554444444 4444555555555555
Q ss_pred HHHHHH
Q 006984 515 ESSLNR 520 (623)
Q Consensus 515 E~sl~k 520 (623)
-.++..
T Consensus 590 ks~~~~ 595 (1293)
T KOG0996|consen 590 KSSLSS 595 (1293)
T ss_pred HHHHHh
Confidence 444443
No 43
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.77 E-value=2.2 Score=51.82 Aligned_cols=279 Identities=22% Similarity=0.261 Sum_probs=151.6
Q ss_pred ccccccccccchHHHHHHHHHHHH----------hhhhhhhHHHhhHHHhhh----HHHHHhhhhhhhHHHHHHHHHH--
Q 006984 199 SNINGKSKMKNADQQRHILRMLEK----------SLARELDLEKKISELNQN----EEQLKLKLHHTEQVAFRMEEAA-- 262 (623)
Q Consensus 199 ~~~~~~~~mqt~eqqR~iLrMLek----------Sla~eldLEkkL~~s~~~----eeeLk~kL~~~eqe~~~lEE~~-- 262 (623)
|++--..+|.+.| ||-|+|- --|-+-.+|||=.-.+++ .+++.=+|.-.-+|+..+=|-.
T Consensus 148 GrITkVLNMKp~E----ILsMvEEAAGTrmye~kKe~A~ktiekKetKlkEi~~lL~eeI~P~l~KLR~Ers~~lE~q~~ 223 (1174)
T KOG0933|consen 148 GRITKVLNMKPSE----ILSMVEEAAGTRMYENKKEAAEKTIEKKETKLKEINTLLREEILPRLEKLREERSQYLEYQKI 223 (1174)
T ss_pred ccchhhhcCCcHH----HHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 5666778999887 8999984 344555555554443333 3344444544444443332222
Q ss_pred ---HHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccc------chhchhHHHHHHHhHHHHHhhhhHHHHHhhcC--
Q 006984 263 ---EVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNG------SLQRESELKSKLGDFIEQLKAKDMVLQKLEST-- 331 (623)
Q Consensus 263 ---~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~~------s~~REsel~sKL~~~~eqL~~k~~~lekl~~s-- 331 (623)
.+-..|+.. .--++++ +..-..+...++..+.+.+..-...++.++..
T Consensus 224 ~~dle~l~R~~i---------------------a~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ik 282 (1174)
T KOG0933|consen 224 NRDLERLSRICI---------------------AYEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIK 282 (1174)
T ss_pred HHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 111122211 1111111 12223445555555555555444444333332
Q ss_pred -----C----hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHH
Q 006984 332 -----K----NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQL 402 (623)
Q Consensus 332 -----~----esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~L 402 (623)
+ .-++.+|..++.++-...-.....+...+..+..-+.++..|...|.+++..+..=+.+....+.-...+
T Consensus 283 ei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ 362 (1174)
T KOG0933|consen 283 EIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKL 362 (1174)
T ss_pred HHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 1 2344556666665555555555556666666665577888888889888888888777777654444443
Q ss_pred hhhhHHHH-------HHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhh
Q 006984 403 TDTNLELS-------EEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSK 475 (623)
Q Consensus 403 seTNdELe-------relk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme~vIEdLk~K 475 (623)
-++-.+.. ..+..|..--++.++--..|+.||+.+++++-.|..-.+.+.- + +.|....+...+++
T Consensus 363 ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~----k---~e~~~~elk~~e~e 435 (1174)
T KOG0933|consen 363 KEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKL----K---LEHLRKELKLREGE 435 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHhhhhH
Confidence 33332222 2222232222223334678999999998776666655554443 2 33444444433333
Q ss_pred hhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhH
Q 006984 476 VSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANI 523 (623)
Q Consensus 476 l~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q 523 (623)
....+..+....++|..+.+-++.|+.++....-
T Consensus 436 --------------~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~ 469 (1174)
T KOG0933|consen 436 --------------LATASAEYVKDIEELDALQNEVEKLKKRLQSLGY 469 (1174)
T ss_pred --------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3333444448889999998888888887766543
No 44
>PRK11637 AmiB activator; Provisional
Probab=96.75 E-value=1.2 Score=48.48 Aligned_cols=32 Identities=3% Similarity=0.053 Sum_probs=16.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006984 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSL 560 (623)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~ 560 (623)
+..+....+-....+.+|..+..+|...|..+
T Consensus 221 l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 221 LTGLESSLQKDQQQLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444555666666666665544
No 45
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.66 E-value=2.5 Score=51.25 Aligned_cols=132 Identities=17% Similarity=0.243 Sum_probs=85.1
Q ss_pred HHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHH
Q 006984 374 MDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQE 453 (623)
Q Consensus 374 LerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaEas~e 453 (623)
+...++.+++++..++.++-...-.+......-.-++..++.-.+. -+-|+..|++.++.++.+++....-.+ .
T Consensus 739 ~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~---re~rlkdl~keik~~k~~~e~~~~~~e---k 812 (1174)
T KOG0933|consen 739 LLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKAN---RERRLKDLEKEIKTAKQRAEESSKELE---K 812 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh---hHhHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 3445556666677766666666555555555555555555543332 134666777777766644333332222 2
Q ss_pred HHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHh
Q 006984 454 QQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRAN 522 (623)
Q Consensus 454 qQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~ 522 (623)
.+.+.-++..=+|.|+......+.-.+..+.+|. .|..|+..++.++...+....++.
T Consensus 813 ----~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~-------~l~~e~~~l~~kv~~~~~~~~~~~ 870 (1174)
T KOG0933|consen 813 ----RENEYERLQLEHEELEKEISSLKQQLEQLEKQIS-------SLKSELGNLEAKVDKVEKDVKKAQ 870 (1174)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHhHHHHHH
Confidence 4556777778888899999999999999999999 777777777777777665554443
No 46
>PRK01156 chromosome segregation protein; Provisional
Probab=96.65 E-value=2.2 Score=50.31 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=15.6
Q ss_pred hHhhHHHHHHHHHHHHHhhHhhhhhhhhcc
Q 006984 153 CEGSLKESQEHVSELKMQSAKFQRVLSYFI 182 (623)
Q Consensus 153 ~~~sLkq~~e~~~ei~~qsa~f~r~~~~~~ 182 (623)
...-+.+.+..+.+++.+...+...+..+.
T Consensus 414 ~~~~~~~l~~~i~~l~~~i~~l~~~~~el~ 443 (895)
T PRK01156 414 INVKLQDISSKVSSLNQRIRALRENLDELS 443 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555566665565555554433
No 47
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.62 E-value=1.8 Score=48.87 Aligned_cols=217 Identities=18% Similarity=0.271 Sum_probs=126.7
Q ss_pred cchHHHHHHHHHHHHhhhhhhhHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHH
Q 006984 208 KNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEML 287 (623)
Q Consensus 208 qt~eqqR~iLrMLekSla~eldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~ 287 (623)
++.+++.+|+. ++. ..-..+++.|..+....+.|+..+-....-. .++..+-.....|.+..+...
T Consensus 197 eAeee~~~~~~--~~~-~~~~~~~~~leeae~~l~~L~~e~~~~k~Le-----------~kL~~a~~~l~~Lq~El~~~~ 262 (522)
T PF05701_consen 197 EAEEERIEIAA--ERE-QDAEEWEKELEEAEEELEELKEELEAAKDLE-----------SKLAEASAELESLQAELEAAK 262 (522)
T ss_pred HHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 44555666653 332 2334678888888888888887774433333 344444444555665555444
Q ss_pred h-hhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhh
Q 006984 288 G-RFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT 366 (623)
Q Consensus 288 g-kLq~~qf~L~~s~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEe 366 (623)
. ++.... ........+...|.+....|+.-...|++.. +|+..|+..+.+|..+|.....-+...+.+...
T Consensus 263 ~~~l~~~~----~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k----~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~ 334 (522)
T PF05701_consen 263 ESKLEEEA----EAKEKSSELQSSLASAKKELEEAKKELEKAK----EEASSLRASVESLRSELEKEKEELERLKEREKE 334 (522)
T ss_pred HHHHhhhH----HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 222211 3556667788888888888888888888764 678899999999999999888888888777666
Q ss_pred hHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhh
Q 006984 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (623)
Q Consensus 367 sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~a 446 (623)
....|+.|+..+.-++.++.-+...-..+-.....+..+-.++..+....+. .....-..+..++.+++++++
T Consensus 335 a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~-------ea~~~~~E~~~~k~E~e~~ka 407 (522)
T PF05701_consen 335 ASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKK-------EAEEAKEEVEKAKEEAEQTKA 407 (522)
T ss_pred HHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 6666655555555555555333322222222222333333333333222221 122223345555666666666
Q ss_pred hhHhHHH
Q 006984 447 SSEASQE 453 (623)
Q Consensus 447 saEas~e 453 (623)
.+.+...
T Consensus 408 ~i~t~E~ 414 (522)
T PF05701_consen 408 AIKTAEE 414 (522)
T ss_pred HHHHHHH
Confidence 6666654
No 48
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.57 E-value=2.1 Score=49.12 Aligned_cols=317 Identities=18% Similarity=0.162 Sum_probs=157.8
Q ss_pred hhhhhhhHHHhhHHHhhhHHHHHhhhhhhhH----HHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcc
Q 006984 223 SLARELDLEKKISELNQNEEQLKLKLHHTEQ----VAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLN 298 (623)
Q Consensus 223 Sla~eldLEkkL~~s~~~eeeLk~kL~~~eq----e~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~ 298 (623)
|--+=|+.+-. ....+.+|+.+|...-+ +...|+.....+.+.+- ..+-.-|--..+..+-..+|.|.|
T Consensus 204 ~Y~~fl~g~d~---~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~----e~ek~~~~~eslre~~~~L~~D~n 276 (581)
T KOG0995|consen 204 SYTSFLKGEDN---SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMIN----EREKDPGKEESLREKKARLQDDVN 276 (581)
T ss_pred HHHHHhccCcc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCcchHHHHHHHHHHHHhHHH
Confidence 33344444443 34556677766654443 23334444444444443 333334444444455555555554
Q ss_pred cchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHH---HHHHHhHhhHhhhHHHHHhHH
Q 006984 299 GSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESE---IRLQNANACFQTSQEQLNEMD 375 (623)
Q Consensus 299 ~s~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~---eQL~~A~aklEesE~EVaaLe 375 (623)
-..--.+.+++|-..-...|+....+++. +++|...|+.+...|-++++.-. ++....+...++-..++..++
T Consensus 277 K~~~y~~~~~~k~~~~~~~l~~l~~Eie~----kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~ 352 (581)
T KOG0995|consen 277 KFQAYVSQMKSKKQHMEKKLEMLKSEIEE----KEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQ 352 (581)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222233333322222222222222221 46677777777776666655422 222222222222222333222
Q ss_pred HHHHHH----HhHHHhhhhhHHHHHHHHHHHhhhhHHHHHH-hhhhhc--CCCC---c-----chhh-hhHHHHHHHHHH
Q 006984 376 NFIESL----KESLYGAESRAESAEEKVTQLTDTNLELSEE-INFLKG--NNDS---N-----TKKV-GILENQLRDLEI 439 (623)
Q Consensus 376 rrIelL----KEel~rAEsRa~tAesKle~LseTNdELere-lk~Les--rs~~---d-----eEk~-~~LE~QLKEa~~ 439 (623)
..+..| .+.=..++.+...-+.+...+-..+..+... .....| ++-- . -..+ -.|..-+.+...
T Consensus 353 ~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~ 432 (581)
T KOG0995|consen 353 SELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISE 432 (581)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHH
Confidence 222222 2222345556666677777777777777776 555555 2110 0 0011 011111222221
Q ss_pred HHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHH
Q 006984 440 QLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLN 519 (623)
Q Consensus 440 QLqhA~asaEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~ 519 (623)
++..|+. ... -+-+.++.|.++|++++.-+..-+.++-.++++|-..-+++. +|..--+.-++.||.++.
T Consensus 433 ~~~~~~~---~~~----tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~e---ee~~k~~~E~e~le~~l~ 502 (581)
T KOG0995|consen 433 ELHEAEN---ELE----TLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAE---EEWKKCRKEIEKLEEELL 502 (581)
T ss_pred HHHHHHH---HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 2221111 111 134567778888998888888888888888888886655544 556667777778887777
Q ss_pred HHhHHHHhhHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 006984 520 RANIEKAASAKEVNHRTKLMM----EMVMQLATQRELIQKQVYSL 560 (623)
Q Consensus 520 kA~q~k~~tlKeae~Rak~aE----~lV~KL~~ErdrLe~ql~s~ 560 (623)
.-+..=....++++.+-+-++ ++|.-..-+|..+..||..+
T Consensus 503 ~l~l~~~~~m~~a~~~v~s~e~el~~~~~~~~eer~ki~~ql~~~ 547 (581)
T KOG0995|consen 503 NLKLVLNTSMKEAEELVKSIELELDRMVATGEEERQKIAKQLFAV 547 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766655555666665544443 45555555666666665543
No 49
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.46 E-value=4.3 Score=51.43 Aligned_cols=39 Identities=13% Similarity=0.144 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 006984 536 TKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (623)
Q Consensus 536 ak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t 574 (623)
...++.+-..+..+++.|.++..+..+..-.+-+.+++.
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL 591 (1486)
T PRK04863 553 EDELEQLQEELEARLESLSESVSEARERRMALRQQLEQL 591 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888888888888877777776666655
No 50
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.44 E-value=0.41 Score=55.92 Aligned_cols=219 Identities=18% Similarity=0.282 Sum_probs=113.7
Q ss_pred HHHHHHHhhhhhhhHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhh
Q 006984 216 ILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQF 295 (623)
Q Consensus 216 iLrMLekSla~eldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf 295 (623)
...=||.-|.+ |-..|..+|++|.||+..+...++- +| .+++++..++..-..+|.
T Consensus 419 a~~rLE~dvkk---LraeLq~~Rq~E~ELRsqis~l~~~------------Er---------~lk~eL~qlr~ene~Lq~ 474 (697)
T PF09726_consen 419 AISRLEADVKK---LRAELQSSRQSEQELRSQISSLTNN------------ER---------SLKSELSQLRQENEQLQN 474 (697)
T ss_pred HHHHHHHHHHH---HHHHHHhhhhhHHHHHHHHhhcccc------------ch---------HHHHHHHHHHHHHHHHHH
Confidence 34458888888 8889999999999999998754431 11 233444444433333333
Q ss_pred hcccch-hchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhH-------------
Q 006984 296 NLNGSL-QRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNAN------------- 361 (623)
Q Consensus 296 ~L~~s~-~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~------------- 361 (623)
-+.... .|+.| +.++.+|+. -+...+++-..+|.||.+-.-+-..+.
T Consensus 475 Kl~~L~~aRq~D-----Kq~l~~LEk--------------rL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~ 535 (697)
T PF09726_consen 475 KLQNLVQARQQD-----KQSLQQLEK--------------RLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQAT 535 (697)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhc
Confidence 222211 12222 111222221 122444555556666655443322111
Q ss_pred --hhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHH-HHH
Q 006984 362 --ACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLR-DLE 438 (623)
Q Consensus 362 --aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLK-Ea~ 438 (623)
..-|.+.....+|++.|.-|.-++...|++...++.++..+-.-.-|...+.-.|-+-=.+--||-..||+.|. |.+
T Consensus 536 r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtr 615 (697)
T PF09726_consen 536 RQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETR 615 (697)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 11122355778888888888888888888888888888655544222222222222211112345667777765 222
Q ss_pred HHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhh
Q 006984 439 IQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSK 478 (623)
Q Consensus 439 ~QLqhA~asaEas~eqQ~mky~ei~dme~vIEdLk~Kl~r 478 (623)
+-|.==.|.. ++.+|....-..+..++.-|.|||.|+..
T Consensus 616 iKldLfsaLg-~akrq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 616 IKLDLFSALG-DAKRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222111222 33333444555666666777777777553
No 51
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.38 E-value=1.5 Score=48.41 Aligned_cols=36 Identities=6% Similarity=0.194 Sum_probs=26.7
Q ss_pred HhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcc
Q 006984 147 EKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFI 182 (623)
Q Consensus 147 ~~kL~~~~~sLkq~~e~~~ei~~qsa~f~r~~~~~~ 182 (623)
..++...+..+.+.+.++..+..+.+.|++.+..+.
T Consensus 173 k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~ 208 (562)
T PHA02562 173 KDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQR 208 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 566677777777788888888888777777776544
No 52
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.33 E-value=3.6 Score=50.22 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=22.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006984 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTS 562 (623)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~ke 562 (623)
+++.+....-++.-..+|.+.++....+|-.++.
T Consensus 431 ~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 431 AKEEEEEKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555666666777777777777776666666554
No 53
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.30 E-value=4.4 Score=49.93 Aligned_cols=139 Identities=21% Similarity=0.270 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhcc--------chhhH
Q 006984 429 ILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSE--------DNFEL 500 (623)
Q Consensus 429 ~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse--------~N~EL 500 (623)
.|+.++..++.+++.+..-.++... .++..-..++.++.++.+++...+.++.+..-|.. .+..+
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 676 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEK-------QLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAK 676 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554433322221 12222333444444444444444444444432221 12344
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 006984 501 KNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRT--------KLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQ 572 (623)
Q Consensus 501 eEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Ra--------k~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld 572 (623)
++...-+...+..++..+.+..+....+..+...+. .........+...++.+..++-..+.+++.--..|+
T Consensus 677 ~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le 756 (1201)
T PF12128_consen 677 EERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELE 756 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666644443332 233445666666666666666666666666666665
Q ss_pred hc
Q 006984 573 YS 574 (623)
Q Consensus 573 ~t 574 (623)
+-
T Consensus 757 ~~ 758 (1201)
T PF12128_consen 757 QQ 758 (1201)
T ss_pred HH
Confidence 55
No 54
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.13 E-value=2.2 Score=50.13 Aligned_cols=58 Identities=19% Similarity=0.158 Sum_probs=37.4
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHH---HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006984 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAK---EVNHRTKLMMEMVMQLATQRELIQKQ 556 (623)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlK---eae~Rak~aE~lV~KL~~ErdrLe~q 556 (623)
.|--.|+.++.+---||.+|..-+--|..-.. |+--.-+++...+.+=.+||..|...
T Consensus 591 ~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~k 651 (697)
T PF09726_consen 591 VLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAK 651 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667788888888888888877777766633 33334555555555555555555443
No 55
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.12 E-value=5.5 Score=49.27 Aligned_cols=263 Identities=16% Similarity=0.210 Sum_probs=144.7
Q ss_pred HHHHHHHHHHhhhhhhhHHHhhHHHhh--hHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhh
Q 006984 213 QRHILRMLEKSLARELDLEKKISELNQ--NEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRF 290 (623)
Q Consensus 213 qR~iLrMLekSla~eldLEkkL~~s~~--~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkL 290 (623)
-+.-||-|=++|-.=|.=.+.=-++.+ -++=|.+.|-.+-+ .++..+..|-+|...--|.-.| ....+.=+.|-
T Consensus 1469 s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpe---qi~~L~~~I~e~v~sL~nVd~I-L~~T~~di~ra 1544 (1758)
T KOG0994|consen 1469 SNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPE---QIQQLTGEIQERVASLPNVDAI-LSRTKGDIARA 1544 (1758)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHH---HHHHHHHHHHHHHHhcccHHHH-HHhhhhhHHHH
Confidence 344455555555544433332222222 13345555544444 3455667777777666665444 45667778888
Q ss_pred hHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHH
Q 006984 291 QIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQ 370 (623)
Q Consensus 291 q~~qf~L~~s~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~E 370 (623)
..+|..-+.+..+=.+++.+-++-.+.|+.-+.+....... ++....-+...++.|.+.++....|...+-.+-..
T Consensus 1545 ~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~a----i~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~ 1620 (1758)
T KOG0994|consen 1545 ENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDA----IQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQ 1620 (1758)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88898888888888888888888888888766555544432 11112223344444555544444444444444556
Q ss_pred HHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhh-hhHHHHHHHHHHHHHHhhhhhH
Q 006984 371 LNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKV-GILENQLRDLEIQLQQAKVSSE 449 (623)
Q Consensus 371 VaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~-~~LE~QLKEa~~QLqhA~asaE 449 (623)
++.|+++++.||-+....-.-|.+|+.-.--+...|..-+..++.|... -+++ .++|+....+..--+.|...-.
T Consensus 1621 ~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~----~~~~~~l~~~r~~g~~~ar~rAe~L~~ 1696 (1758)
T KOG0994|consen 1621 LGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKY----YELVDRLLEKRMEGSQAARERAEQLRT 1696 (1758)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 6677777777776665544444444444444444444444444433332 1222 3444444333211122222222
Q ss_pred hHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 006984 450 ASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (623)
Q Consensus 450 as~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~ 491 (623)
.+.. ++-..-+|+.-+.||..++++-+-+++.....+.
T Consensus 1697 eA~~----Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~ 1734 (1758)
T KOG0994|consen 1697 EAEK----LLGQANEKLDRLKDLELEYLRNEQALEDKAAELA 1734 (1758)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 3322 4555667777888888888888877666665555
No 56
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.08 E-value=0.0015 Score=74.76 Aligned_cols=147 Identities=20% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHhHHHhhhhhH------HHHHHHHHHHhhhhHHHHHHhhhhhcCCCCc---chhhhhH----------
Q 006984 370 QLNEMDNFIESLKESLYGAESRA------ESAEEKVTQLTDTNLELSEEINFLKGNNDSN---TKKVGIL---------- 430 (623)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa------~tAesKle~LseTNdELerelk~Lesrs~~d---eEk~~~L---------- 430 (623)
.++..+..|..|+.++...+..+ ..=...+..|..+|..+..+++.|+.....- .+....|
T Consensus 224 ~~~e~e~~i~~Le~el~~~~~~~~i~k~l~~ql~~i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~ 303 (722)
T PF05557_consen 224 SLAEAEQKIKELEAELKDQESDAEINKELKEQLAHIRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERLEEL 303 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445677777776666655543 1123467788999999999999888863211 1222222
Q ss_pred HHHHHHHHHHHHHhh-------hhhHhH------------------------HHHHhhhHHHHHhHHHHHHHHhhhhhhh
Q 006984 431 ENQLRDLEIQLQQAK-------VSSEAS------------------------QEQQSMLYSAIWDMETLIEDLKSKVSKA 479 (623)
Q Consensus 431 E~QLKEa~~QLqhA~-------asaEas------------------------~eqQ~mky~ei~dme~vIEdLk~Kl~rA 479 (623)
+.+|-++++|.++-. ....+. ..+.+-.-..+..+...|.+|..++..+
T Consensus 304 ~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l 383 (722)
T PF05557_consen 304 EEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQL 383 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 233333332222221 111110 0122223446667777777777777777
Q ss_pred hhhhhhhhhhhhhhccchhhHHH-------HHHHHHhhHHHHHH
Q 006984 480 ESKTESVEEQCIVLSEDNFELKN-------KQSFMRDKIKILES 516 (623)
Q Consensus 480 E~RaE~aEsKc~~Lse~N~ELeE-------EL~~l~~~lksLE~ 516 (623)
...++.++.+...+...+..|+. |..+||.-|++.+.
T Consensus 384 ~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~ 427 (722)
T PF05557_consen 384 LKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDK 427 (722)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 77777777777666666666553 45555555555443
No 57
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.00 E-value=5.3 Score=49.47 Aligned_cols=89 Identities=24% Similarity=0.272 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCC
Q 006984 341 EKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNN 420 (623)
Q Consensus 341 kKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs 420 (623)
++.+.|+.+++.+..++..++... ...+.-.+....+.-.+..++--+.+..++|..+..++.++...+..++..+
T Consensus 508 ~~~~~l~~~~~~~~eele~~q~~~----~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~ 583 (1317)
T KOG0612|consen 508 AKKRKLEALVRQLEEELEDAQKKN----DNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEEN 583 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhcc
Confidence 344444444444444444442221 2222334445555566666666677777888888888888888888777755
Q ss_pred CCcchhhhhHHHH
Q 006984 421 DSNTKKVGILENQ 433 (623)
Q Consensus 421 ~~deEk~~~LE~Q 433 (623)
..-.+++..|+..
T Consensus 584 ~~~~d~l~~le~~ 596 (1317)
T KOG0612|consen 584 RDLEDKLSLLEES 596 (1317)
T ss_pred ccHHHHHHHHHHH
Confidence 5556777777655
No 58
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.77 E-value=2.3 Score=48.77 Aligned_cols=302 Identities=15% Similarity=0.166 Sum_probs=159.5
Q ss_pred hHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcccCCCcccccccccCCcccccccccccchHHHHHHHHHHHHhhh
Q 006984 146 MEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLA 225 (623)
Q Consensus 146 ~~~kL~~~~~sLkq~~e~~~ei~~qsa~f~r~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~mqt~eqqR~iLrMLekSla 225 (623)
+.++|.+|=+..+++..|=..+..+.--|+.++.. +. ++++...
T Consensus 47 LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~------~t----------s~ik~~y-------------------- 90 (546)
T KOG0977|consen 47 LNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGR------ET----------SGIKAKY-------------------- 90 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------CC----------cchhHHh--------------------
Confidence 36677777777777777776666666666655421 11 2222222
Q ss_pred hhhhHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchh
Q 006984 226 RELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRES 305 (623)
Q Consensus 226 ~eldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~~s~~REs 305 (623)
|.-|..++.+.++-.-..+-++.+...+.+....+-.||.+++.....-+.......++|..++.-++=.-.|=.
T Consensus 91 -----e~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~ 165 (546)
T KOG0977|consen 91 -----EAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIK 165 (546)
T ss_pred -----hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 222344455555555556666777777777777777777777777777777777777777766666554443333
Q ss_pred HHHHHHHhHHHHHhhhhHHHHHhhcCChhHH---HHHHHHHHHHHHHHHHH---------------------------HH
Q 006984 306 ELKSKLGDFIEQLKAKDMVLQKLESTKNSEV---LTMKEKVKSLEEQLKES---------------------------EI 355 (623)
Q Consensus 306 el~sKL~~~~eqL~~k~~~lekl~~s~esEv---~sLqkKvksLE~qLdes---------------------------~e 355 (623)
.+.+.++....+...-...|..++.-.+.|. ..++.+++.|-.+|+-. .-
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~ 245 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKN 245 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHH
Confidence 3333333322222222333333332222222 23333333333333222 22
Q ss_pred HHHHhHhhHhhh-HH-------HH-HhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchh
Q 006984 356 RLQNANACFQTS-QE-------QL-NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKK 426 (623)
Q Consensus 356 QL~~A~aklEes-E~-------EV-aaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk 426 (623)
+|+.|-..+-+- +. ++ ..+.++|+.++....++=.-...+...+..+--....|...+..|++++..-+.+
T Consensus 246 eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~ 325 (546)
T KOG0977|consen 246 ELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKR 325 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHH
Confidence 222222111110 11 11 1455666666655555555555566666666666777777777777776655555
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHH
Q 006984 427 VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSF 506 (623)
Q Consensus 427 ~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~ 506 (623)
++-|+.||.+-. .+--..+.++.+-|..+...+...-. ..-.|=+++.-|.-||+.
T Consensus 326 I~dL~~ql~e~~-----------------r~~e~~L~~kd~~i~~mReec~~l~~-------Elq~LlD~ki~Ld~EI~~ 381 (546)
T KOG0977|consen 326 IEDLEYQLDEDQ-----------------RSFEQALNDKDAEIAKMREECQQLSV-------ELQKLLDTKISLDAEIAA 381 (546)
T ss_pred HHHHHhhhhhhh-----------------hhhhhhhhhHHHHHHHHHHHHHHHHH-------HHHHhhchHhHHHhHHHH
Confidence 555555554422 11223566666666655555444332 244566777788888988
Q ss_pred HHhhHH
Q 006984 507 MRDKIK 512 (623)
Q Consensus 507 l~~~lk 512 (623)
||.=|.
T Consensus 382 YRkLLe 387 (546)
T KOG0977|consen 382 YRKLLE 387 (546)
T ss_pred HHHHhc
Confidence 875444
No 59
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=6.8 Score=46.24 Aligned_cols=225 Identities=25% Similarity=0.277 Sum_probs=119.4
Q ss_pred ccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChh--HHHHHHHHHHHHHHH
Q 006984 272 AENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNS--EVLTMKEKVKSLEEQ 349 (623)
Q Consensus 272 AENa~EvL~g~skel~gkLq~~qf~L~~s~~REsel~sKL~~~~eqL~~k~~~lekl~~s~es--Ev~sLqkKvksLE~q 349 (623)
+.=..+.++|-+++-.++|+ .|...-.+.+.++-..+.+..-+.-. -.-....++..++.+
T Consensus 376 ~~~~le~~k~~~ke~~~~~~-----------------~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~ 438 (698)
T KOG0978|consen 376 NELRLEMLKSLLKEQRDKLQ-----------------VKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEEL 438 (698)
T ss_pred HHHHHHHHhCCCHHHHhHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH
Confidence 33445777888888888777 45555555555554444444433000 000111223333333
Q ss_pred HHHHHHHHHHhHhhHhh---hHHHHHhHHHHHHHHHhHHHhhhhhHHH-------HHHHHHHHhhhhHHHHHHhhhhhcC
Q 006984 350 LKESEIRLQNANACFQT---SQEQLNEMDNFIESLKESLYGAESRAES-------AEEKVTQLTDTNLELSEEINFLKGN 419 (623)
Q Consensus 350 Ldes~eQL~~A~aklEe---sE~EVaaLerrIelLKEel~rAEsRa~t-------AesKle~LseTNdELerelk~Lesr 419 (623)
..+.+-......+-+.+ .-+-.-+|+.+|.-|=.++.+++-+.=- +-.+...|.+.-+.++..+.-|.+.
T Consensus 439 ~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~ 518 (698)
T KOG0978|consen 439 SEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKAS 518 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333322222 1234445666666666666666655433 3344444444444444444444444
Q ss_pred CCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhh--hHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccch
Q 006984 420 NDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSM--LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDN 497 (623)
Q Consensus 420 s~~deEk~~~LE~QLKEa~~QLqhA~asaEas~eqQ~m--ky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N 497 (623)
...-..++.-||.|++-.- =....-+.+--..+|+| .-.++.+...-.++||.++.+.+...+..+.+|.
T Consensus 519 ~~~~~~~i~~leeq~~~lt--~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~------ 590 (698)
T KOG0978|consen 519 VDKLELKIGKLEEQERGLT--SNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYA------ 590 (698)
T ss_pred HHHHHHHHHHHHHHHHHhh--HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 3323445555555555432 11112222222333332 2235666777788888888888888888888888
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHh
Q 006984 498 FELKNKQSFMRDKIKILESSLNRAN 522 (623)
Q Consensus 498 ~ELeEEL~~l~~~lksLE~sl~kA~ 522 (623)
++..||...+-+.+-||.-+.+.+
T Consensus 591 -e~~~ele~~~~k~~rleEE~e~L~ 614 (698)
T KOG0978|consen 591 -ELELELEIEKFKRKRLEEELERLK 614 (698)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887776655543
No 60
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.60 E-value=0.0032 Score=73.99 Aligned_cols=97 Identities=19% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHhhHhhh-HHHH-------HhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 006984 345 SLEEQLKESEIRLQNANACFQTS-QEQL-------NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 416 (623)
Q Consensus 345 sLE~qLdes~eQL~~A~aklEes-E~EV-------aaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~L 416 (623)
.++.++...+.++..++.+++.- ...+ ..|.+.|..+.+.+..+..+..+.+-.+.-|+.-...+...+.-.
T Consensus 289 ~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~ 368 (859)
T PF01576_consen 289 ELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKA 368 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555442 1111 244445555555544444444444444444443333333333333
Q ss_pred hcCCCCcchhhhhHHHHHHHHHHHH
Q 006984 417 KGNNDSNTKKVGILENQLRDLEIQL 441 (623)
Q Consensus 417 esrs~~deEk~~~LE~QLKEa~~QL 441 (623)
.+.....+.|...++.+|-+.+..+
T Consensus 369 ~~~~~~LeKKqr~fDk~l~e~k~~~ 393 (859)
T PF01576_consen 369 QAAAAELEKKQRKFDKQLAEWKAKV 393 (859)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3333333444455555555544333
No 61
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.32 E-value=3.6 Score=49.14 Aligned_cols=106 Identities=17% Similarity=0.108 Sum_probs=63.5
Q ss_pred hhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006984 280 MGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQN 359 (623)
Q Consensus 280 ~g~skel~gkLq~~qf~L~~s~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~ 359 (623)
.-+++.....++.+++++.|.+.+=+ .-++++.+...+++-.++.=++++.....-..++.+|++-...||..
T Consensus 645 ~~~~~k~~e~l~~~~~kyK~lI~~lD-------~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~ 717 (970)
T KOG0946|consen 645 TQLAEKYHEELDDIQQKYKGLIRELD-------YQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGI 717 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34677888899999999998776533 33444444444444444333567777777777788888888777764
Q ss_pred hHhhHhhh----------HHHHHhHHHHHHHHHhHHHhhhhhH
Q 006984 360 ANACFQTS----------QEQLNEMDNFIESLKESLYGAESRA 392 (623)
Q Consensus 360 A~aklEes----------E~EVaaLerrIelLKEel~rAEsRa 392 (623)
+..+.... ..+++++.-.++.++-+...+...+
T Consensus 718 ~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L 760 (970)
T KOG0946|consen 718 ISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKEL 760 (970)
T ss_pred cccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333221 3355555555555554444444433
No 62
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=95.23 E-value=4.2 Score=41.57 Aligned_cols=195 Identities=21% Similarity=0.253 Sum_probs=112.5
Q ss_pred HHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHH
Q 006984 230 LEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKS 309 (623)
Q Consensus 230 LEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~~s~~REsel~s 309 (623)
+|+.+.....-.+.|..+...+-.-...+...++..+.|-..-.-.+.-+.....+++.++...-- ++....-.+|..
T Consensus 50 ~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~--~~~~~~~~~l~~ 127 (264)
T PF06008_consen 50 LEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE--NGDQLPSEDLQR 127 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--ccCCCCHHHHHH
Confidence 455566666666777777777777777778888888877766666666666666667766654433 566667788888
Q ss_pred HHHhHHHHHhhh-hHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH-----------hhhHHHHHhHHHH
Q 006984 310 KLGDFIEQLKAK-DMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACF-----------QTSQEQLNEMDNF 377 (623)
Q Consensus 310 KL~~~~eqL~~k-~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~akl-----------EesE~EVaaLerr 377 (623)
+|+.+..=|..- ...+... ....+.+++.++.-|..++.-+ +.....++..+.+
T Consensus 128 ~l~ea~~mL~emr~r~f~~~--------------~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~k 193 (264)
T PF06008_consen 128 ALAEAQRMLEEMRKRDFTPQ--------------RQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAK 193 (264)
T ss_pred HHHHHHHHHHHHHhccchhH--------------HHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHH
Confidence 888877655531 1112222 2222333333333222222221 2234466677777
Q ss_pred HHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhh
Q 006984 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS 447 (623)
Q Consensus 378 IelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~as 447 (623)
+.+|.+-+.+|......|...+..-..+-.++++....+... .......|.+++.-|.+|...
T Consensus 194 L~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~-------~~~~~~~L~~a~~~L~~a~~l 256 (264)
T PF06008_consen 194 LQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQ-------QNEVSETLKEAEDLLDQANDL 256 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777776665555555555555554444432 344455555555444444333
No 63
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.86 E-value=9.7 Score=43.84 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=24.0
Q ss_pred HHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhc
Q 006984 142 IMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYF 181 (623)
Q Consensus 142 ~~~~~~~kL~~~~~sLkq~~e~~~ei~~qsa~f~r~~~~~ 181 (623)
.+++++.++.+....+......+..++.+....+.-+..+
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l 249 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESL 249 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666555555443
No 64
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.79 E-value=9.6 Score=43.47 Aligned_cols=150 Identities=22% Similarity=0.273 Sum_probs=85.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 006984 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (623)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELere 412 (623)
++++..+++++...-..|+.. .+..|...++....+|..|=..++-=-..-..-+.........+..+.+.|.++..+
T Consensus 251 ~~~i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e 328 (560)
T PF06160_consen 251 EEEIEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEE 328 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555444444444322 233333333333344443333333322333345667777788888999999999999
Q ss_pred hhhhhcC---CCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhh
Q 006984 413 INFLKGN---NDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQ 489 (623)
Q Consensus 413 lk~Lesr---s~~deEk~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsK 489 (623)
+..+..+ +..+.+++..+++|++....+.........+... -|+.+.....-+. ..+...+..-...-..
T Consensus 329 ~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~----~yS~i~~~l~~~~---~~l~~ie~~q~~~~~~ 401 (560)
T PF06160_consen 329 LERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQV----PYSEIQEELEEIE---EQLEEIEEEQEEINES 401 (560)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----CHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 9999887 2224678889999998888777666655555444 6777665554333 4444444333333333
Q ss_pred hh
Q 006984 490 CI 491 (623)
Q Consensus 490 c~ 491 (623)
+.
T Consensus 402 l~ 403 (560)
T PF06160_consen 402 LQ 403 (560)
T ss_pred HH
Confidence 44
No 65
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=94.68 E-value=3.5 Score=43.97 Aligned_cols=96 Identities=23% Similarity=0.291 Sum_probs=82.5
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh---HHHHHHhHHHHHHHHHH
Q 006984 469 IEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNHRTKLMMEMVMQ 545 (623)
Q Consensus 469 IEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~t---lKeae~Rak~aE~lV~K 545 (623)
|+=++.++..++...+.++.+.. +...+|.-+..++..|+...+.+...+... ++....|-.-+.+++.-
T Consensus 216 V~P~~~~l~~a~~~l~~~~~~L~-------~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~ 288 (344)
T PF12777_consen 216 VEPKRQKLEEAEAELEEAEEQLA-------EKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISG 288 (344)
T ss_dssp CCHHHHHHHHCCCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhh
Confidence 44566788888888888888888 888999999999999999999888877776 67778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006984 546 LATQRELIQKQVYSLTSENKLLVEKL 571 (623)
Q Consensus 546 L~~ErdrLe~ql~s~keenK~L~ekl 571 (623)
|..|+.|=..++..+......|...+
T Consensus 289 L~~E~~RW~~~~~~l~~~~~~l~GD~ 314 (344)
T PF12777_consen 289 LSGEKERWSEQIEELEEQLKNLVGDS 314 (344)
T ss_dssp CHHHHHCCHCHHHHHHHHHHHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHhcccHHHH
Confidence 99999999999999998888876544
No 66
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.45 E-value=2.3 Score=50.57 Aligned_cols=107 Identities=20% Similarity=0.213 Sum_probs=64.1
Q ss_pred HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhh---HHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHh
Q 006984 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTN---LELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQA 444 (623)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTN---dELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA 444 (623)
++++......+..|++.+.--+.++..+-++.-.+++-+ --.+++++.++..+-.-.-+...+.++|.+-+.-.+.-
T Consensus 691 ~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~ 770 (970)
T KOG0946|consen 691 EEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESF 770 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 556667767777777777777777776555554444422 12233333333332222335667778884444445555
Q ss_pred hhhhHhHHHHHhhhHHHHHhHHHHHHHHhh
Q 006984 445 KVSSEASQEQQSMLYSAIWDMETLIEDLKS 474 (623)
Q Consensus 445 ~asaEas~eqQ~mky~ei~dme~vIEdLk~ 474 (623)
++.+..+.-.|+-.-..+.|.+.|+|+++.
T Consensus 771 k~~~~~a~~~~~~~~~~~~~qeqv~El~~~ 800 (970)
T KOG0946|consen 771 KATQRSAELSQGSLNDNLGDQEQVIELLKN 800 (970)
T ss_pred HHHHhhhhcccchhhhhhhhHHHHHHHHHh
Confidence 666666666666677788899999997554
No 67
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.09 E-value=3.8 Score=39.50 Aligned_cols=93 Identities=19% Similarity=0.239 Sum_probs=78.3
Q ss_pred HHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhh
Q 006984 326 QKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT 405 (623)
Q Consensus 326 ekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseT 405 (623)
++|..+ .++.-+|.++|-+||.+|..++..+..+....|.+..++.+|+..|..+-..+.+.+.-+.+..+.-..+.+.
T Consensus 10 ~kLK~~-~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~ 88 (140)
T PF10473_consen 10 EKLKES-ESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKE 88 (140)
T ss_pred HHHHHH-HHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 6778899999999999999999999999999898899999998888888888888888888888888777777
Q ss_pred hHHHHHHhhhhhcC
Q 006984 406 NLELSEEINFLKGN 419 (623)
Q Consensus 406 NdELerelk~Lesr 419 (623)
-.+....+..|+++
T Consensus 89 lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 89 LQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777776
No 68
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.98 E-value=21 Score=44.08 Aligned_cols=220 Identities=19% Similarity=0.238 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHh-
Q 006984 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEI- 413 (623)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerel- 413 (623)
++.+-+-|+..||.++.-+..++.+.+-+++..+.++.-++..|.....+++.-+-++++.+.....|.+--.+.+..+
T Consensus 677 e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if 756 (1141)
T KOG0018|consen 677 EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIF 756 (1141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999988887776666666666665555555444444444333333333222222210
Q ss_pred -hhhhcCCCC----c--------chhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhh
Q 006984 414 -NFLKGNNDS----N--------TKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAE 480 (623)
Q Consensus 414 -k~Lesrs~~----d--------eEk~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE 480 (623)
.|-..-+.. + ..|.-.+++|+--++.||+--+. .-.-..+.+++.-|+++...+..-+
T Consensus 757 ~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~---------~d~~~~ve~~~~~v~~~~~~~~~~~ 827 (1141)
T KOG0018|consen 757 KGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQ---------KDTQRRVERWERSVEDLEKEIEGLK 827 (1141)
T ss_pred HHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheec---------ccHHHHHHHHHHHHHHHHHhHHhhH
Confidence 011111110 0 12223333444333333332222 2223345555556666655555555
Q ss_pred hhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006984 481 SKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSL 560 (623)
Q Consensus 481 ~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~ 560 (623)
.+-+.++..+. +. +++.- ++ .+....+..-+++...-..-+..-.++|..++..++.+|-..
T Consensus 828 ~~e~~~~k~i~-------e~-~~~e~-k~---------k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~ 889 (1141)
T KOG0018|consen 828 KDEEAAEKIIA-------EI-EELEK-KN---------KSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERK 889 (1141)
T ss_pred HHHHHHHHHHh-------hH-HHHHH-HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Confidence 55455555555 33 23222 11 222222222244444444555566688899999999999999
Q ss_pred HHhhhHHHHHHhhcCCCCcee
Q 006984 561 TSENKLLVEKLQYSGKSSSAT 581 (623)
Q Consensus 561 keenK~L~ekld~t~~~~~~~ 581 (623)
..+...|-..|+--.+..|+.
T Consensus 890 ~~er~~lL~~ckl~~I~vPl~ 910 (1141)
T KOG0018|consen 890 ESERHNLLSKCKLEDIEVPLS 910 (1141)
T ss_pred HHHHHHHHHHhhhcccccccc
Confidence 999888888887666666653
No 69
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=93.85 E-value=17 Score=42.52 Aligned_cols=186 Identities=17% Similarity=0.229 Sum_probs=110.7
Q ss_pred cchHHHHHHHHHHHHhhhhhhhHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhh------
Q 006984 208 KNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMG------ 281 (623)
Q Consensus 208 qt~eqqR~iLrMLekSla~eldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g------ 281 (623)
++++-.|..-+=|=|+--+|+|. .+...++-|-+-..||+++.+|.---=+|-+
T Consensus 55 ~~pe~k~k~~~~llK~yQ~EiD~--------------------LtkRsk~aE~afl~vye~L~eaPDP~pll~sa~~~l~ 114 (629)
T KOG0963|consen 55 NTPEDKLKMVNPLLKSYQSEIDN--------------------LTKRSKFAEAAFLDVYEKLIEAPDPVPLLASAAELLN 114 (629)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHhhHHHHHHHHHHHhhCCCCchHHHHHHHHhh
Confidence 35666777777777777777764 3556778888889999999999765444433
Q ss_pred -hhH------HHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhh------hHHH---HHhhcC---C----hhHHHH
Q 006984 282 -ISK------EMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAK------DMVL---QKLEST---K----NSEVLT 338 (623)
Q Consensus 282 -~sk------el~gkLq~~qf~L~~s~~REsel~sKL~~~~eqL~~k------~~~l---ekl~~s---~----esEv~s 338 (623)
..+ .+...|......|.+..-.+..++ +|+...-+++++ ..+. +++... + -.+-..
T Consensus 115 k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~-~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~ 193 (629)
T KOG0963|consen 115 KQQKASEENEELKEELEEVNNELADLKTQQVTVR-NLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQN 193 (629)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 333333333333222221111111 111111111111 0000 000000 0 244556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHhhh----HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 006984 339 MKEKVKSLEEQLKESEIRLQNANACFQTS----QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (623)
Q Consensus 339 LqkKvksLE~qLdes~eQL~~A~aklEes----E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk 414 (623)
+++++..+|...+..+..+..+..++... ..++++..-.|.++=.++.+|..|+-.++..|+.|.+....-+...+
T Consensus 194 ~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~ 273 (629)
T KOG0963|consen 194 LQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKK 273 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 77777777777777777776666666553 55788888889999999999999999999999988877666665544
No 70
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.74 E-value=17 Score=42.16 Aligned_cols=86 Identities=15% Similarity=0.200 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhh-hcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCCh
Q 006984 255 AFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQF-NLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKN 333 (623)
Q Consensus 255 ~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf-~L~~s~~REsel~sKL~~~~eqL~~k~~~lekl~~s~e 333 (623)
++||. -+..-|.+|+.++--..-+....+.-+.++-...+ .+ ..++......++++. +.++..+
T Consensus 195 k~f~d-y~~~~Y~~fl~g~d~~~~~~~Elk~~l~~~~~~i~~~i-------e~l~~~n~~l~e~i~----e~ek~~~--- 259 (581)
T KOG0995|consen 195 KLFFD-YTIRSYTSFLKGEDNSSELEDELKHRLEKYFTSIANEI-------EDLKKTNRELEEMIN----EREKDPG--- 259 (581)
T ss_pred HHHHH-HHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH----HHhcCcc---
Confidence 45554 55566777776543366666666665555554333 23 234555555555555 2222222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 006984 334 SEVLTMKEKVKSLEEQLKESEIR 356 (623)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQ 356 (623)
=..+|.+|...|.+++.+++.-
T Consensus 260 -~~eslre~~~~L~~D~nK~~~y 281 (581)
T KOG0995|consen 260 -KEESLREKKARLQDDVNKFQAY 281 (581)
T ss_pred -hHHHHHHHHHHHHhHHHHHHHH
Confidence 2235556666666666555543
No 71
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.67 E-value=9.8 Score=39.65 Aligned_cols=65 Identities=22% Similarity=0.406 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHH
Q 006984 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKV 399 (623)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKl 399 (623)
+...+..+.+...+.|+.....+..++..+++.+.++.+|++.+-.++.++..+..|...++.++
T Consensus 18 e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 18 EKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556666677777777777777777777777777777777777777777777766665
No 72
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=93.50 E-value=13 Score=40.09 Aligned_cols=154 Identities=25% Similarity=0.296 Sum_probs=91.6
Q ss_pred HHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhH
Q 006984 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSE 449 (623)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaE 449 (623)
+|+.+.-.++-|-..+++||+++.+.+.++-... |-|.+.-=+| |
T Consensus 138 d~S~lkd~ne~LsQqLskaesK~nsLe~elh~tr---daLrEKtL~l--------------E------------------ 182 (305)
T PF14915_consen 138 DVSNLKDNNEILSQQLSKAESKFNSLEIELHHTR---DALREKTLAL--------------E------------------ 182 (305)
T ss_pred hHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH--------------H------------------
Confidence 6777888888888888888888777766544332 2222221112 1
Q ss_pred hHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhH
Q 006984 450 ASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASA 529 (623)
Q Consensus 450 as~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tl 529 (623)
..++.-+-...-++.|+.+--.=++|+.+.-.+-+++|.++.=|--.|+ -++..|.+.... -..|+.++
T Consensus 183 ~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~-------LLrQQLddA~~K----~~~kek~V 251 (305)
T PF14915_consen 183 SVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENM-------LLRQQLDDAHNK----ADNKEKTV 251 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH----HHHHHHHH
Confidence 1111111112334444444444448999999999999999984444555 444433322111 11244455
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006984 530 KEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (623)
Q Consensus 530 Keae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (623)
-+|..+ +-++|.+|..+.+ .|...+.++||.|..+|...+
T Consensus 252 iniQ~~---f~d~~~~L~ae~e---kq~lllEErNKeL~ne~n~Lk 291 (305)
T PF14915_consen 252 INIQDQ---FQDIVKKLQAESE---KQVLLLEERNKELINECNHLK 291 (305)
T ss_pred hhHHHH---HHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHH
Confidence 555544 5678888877764 477888889999888887653
No 73
>PLN02939 transferase, transferring glycosyl groups
Probab=93.47 E-value=12 Score=45.65 Aligned_cols=57 Identities=32% Similarity=0.566 Sum_probs=36.7
Q ss_pred hHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 006984 458 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (623)
Q Consensus 458 ky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~t 528 (623)
+|+..|.+ +|-|+.=+.+|-..+| +.+++...|- -++.++..||++|..|+..|.++
T Consensus 294 ~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 350 (977)
T PLN02939 294 QYDCWWEK---VENLQDLLDRATNQVE----KAALVLDQNQ-------DLRDKVDKLEASLKEANVSKFSS 350 (977)
T ss_pred hHHHHHHH---HHHHHHHHHHHHHHHH----HHHHHhccch-------HHHHHHHHHHHHHHHhhHhhhhH
Confidence 45555544 3333344445544433 4555666676 56789999999999999988754
No 74
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.44 E-value=18 Score=41.70 Aligned_cols=86 Identities=19% Similarity=0.287 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHh--------------hhhhHHHHHHHH
Q 006984 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYG--------------AESRAESAEEKV 399 (623)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~r--------------AEsRa~tAesKl 399 (623)
+|+..|..|+...++.+....+.+.+...-+-..+++++.+.++|..+++++.+ +-..++....--
T Consensus 120 ~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr 199 (546)
T KOG0977|consen 120 EELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLR 199 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 444455455444444444444444433333333455666666666666655443 333333333333
Q ss_pred HHHhhhhHHHHHHhhhhhcC
Q 006984 400 TQLTDTNLELSEEINFLKGN 419 (623)
Q Consensus 400 e~LseTNdELerelk~Lesr 419 (623)
..+.-....|..++.|+..-
T Consensus 200 ~d~~n~~q~Lleel~f~~~~ 219 (546)
T KOG0977|consen 200 VDLQNRVQTLLEELAFLKRI 219 (546)
T ss_pred HHHHhHHHHHHHHHHHHHhc
Confidence 44556667777777777754
No 75
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.43 E-value=17 Score=41.37 Aligned_cols=287 Identities=16% Similarity=0.183 Sum_probs=137.7
Q ss_pred HHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhh-hhHHHHHhhcCChhHHHHHHHHHHHH
Q 006984 268 RFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKA-KDMVLQKLESTKNSEVLTMKEKVKSL 346 (623)
Q Consensus 268 r~~EAENa~EvL~g~skel~gkLq~~qf~L~~s~~REsel~sKL~~~~eqL~~-k~~~lekl~~s~esEv~sLqkKvksL 346 (623)
||+.|-+..--+......+-.+++.+.-.|+.....|.+-+.....+.+.-.. |+..|.+=++- -+=+..|.+++..+
T Consensus 99 ~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~-G~a~~~le~~l~~~ 177 (569)
T PRK04778 99 RFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSF-GPALDELEKQLENL 177 (569)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-cchHHHHHHHHHHH
Confidence 66666666666666666666666666666666555555555555444444433 22222222222 23455677778888
Q ss_pred HHHHHHHHHHH-----HHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCC
Q 006984 347 EEQLKESEIRL-----QNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNND 421 (623)
Q Consensus 347 E~qLdes~eQL-----~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~ 421 (623)
|.+|..+..-. ..|..-+.....++..|+..++.+-.=+...+.-. =.--++|..+..-+...+.
T Consensus 178 e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~----------P~ql~el~~gy~~m~~~gy 247 (569)
T PRK04778 178 EEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTEL----------PDQLQELKAGYRELVEEGY 247 (569)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hHHHHHHHHHHHHHHHcCC
Confidence 88887776632 23444444445566666666666554444433322 1222344444444444433
Q ss_pred C-----cchhhhhHHHHHHHHH-----HHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 006984 422 S-----NTKKVGILENQLRDLE-----IQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (623)
Q Consensus 422 ~-----deEk~~~LE~QLKEa~-----~QLqhA~asaEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~ 491 (623)
. -+.++..+..++.++. ..|..|....+....+-.-+|+.+.+--.... .++.........+.
T Consensus 248 ~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~-------~vek~~~~l~~~l~ 320 (569)
T PRK04778 248 HLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARK-------YVEKNSDTLPDFLE 320 (569)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhHHHHHHHH
Confidence 2 1455666666666532 22333333333333322335554433322211 11222222222333
Q ss_pred hhccchhhHHHHHHHHHhh----------HHHHHHHHHHHhHHHHhh-----------------HHHHHHhHHHHHHHHH
Q 006984 492 VLSEDNFELKNKQSFMRDK----------IKILESSLNRANIEKAAS-----------------AKEVNHRTKLMMEMVM 544 (623)
Q Consensus 492 ~Lse~N~ELeEEL~~l~~~----------lksLE~sl~kA~q~k~~t-----------------lKeae~Rak~aE~lV~ 544 (623)
=+.+.|.+|..|+..|..+ +..++..++....+-... ++++..+-+.++.-..
T Consensus 321 ~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ 400 (569)
T PRK04778 321 HAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQE 400 (569)
T ss_pred HHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444666666666666 555555555444433322 3344444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 006984 545 QLATQRELIQKQVYSLTSENKLLVEKLQ 572 (623)
Q Consensus 545 KL~~ErdrLe~ql~s~keenK~L~ekld 572 (623)
++...+..|.......+.+...+..++.
T Consensus 401 ei~e~l~~Lrk~E~eAr~kL~~~~~~L~ 428 (569)
T PRK04778 401 KLSEMLQGLRKDELEAREKLERYRNKLH 428 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444443
No 76
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.29 E-value=1.5 Score=44.36 Aligned_cols=113 Identities=19% Similarity=0.264 Sum_probs=77.0
Q ss_pred HHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh------HHHHHHh
Q 006984 462 IWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS------AKEVNHR 535 (623)
Q Consensus 462 i~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~t------lKeae~R 535 (623)
.+|+..-|+||..--.|-...--..-..+....+.|..|-+|+.-++..+++++-.++.|.-.+++- ++.++--
T Consensus 3 t~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~ 82 (193)
T PF14662_consen 3 TSDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEE 82 (193)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777776555555444455556778889999999999999999999998888886555543 5555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 006984 536 TKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (623)
Q Consensus 536 ak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t 574 (623)
..-+-.--.++.+|-..|..+|.++-++|..+....+.+
T Consensus 83 ~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~l 121 (193)
T PF14662_consen 83 NRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGL 121 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhH
Confidence 444444445556666666666666666666665555544
No 77
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.27 E-value=12 Score=39.04 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=13.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Q 006984 532 VNHRTKLMMEMVMQLATQRELIQKQV 557 (623)
Q Consensus 532 ae~Rak~aE~lV~KL~~ErdrLe~ql 557 (623)
++.....+.+-+..+..+++.|...+
T Consensus 147 ~e~e~~~i~e~~~~~~~~~~~L~~~l 172 (239)
T COG1579 147 LEEEVAEIREEGQELSSKREELKEKL 172 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444445555555555665555544
No 78
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.17 E-value=11 Score=45.13 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=18.3
Q ss_pred hhhhhhhhhhccchhhHHHHHHHHHhhHHHHH
Q 006984 484 ESVEEQCIVLSEDNFELKNKQSFMRDKIKILE 515 (623)
Q Consensus 484 E~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE 515 (623)
-.|-.|.+ |=-+=|..||..||+|-
T Consensus 736 aaAA~KLA-------ECQeTI~sLGkQLksLa 760 (769)
T PF05911_consen 736 AAAAEKLA-------ECQETIASLGKQLKSLA 760 (769)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHhcC
Confidence 35555666 77777888888888884
No 79
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=93.14 E-value=11 Score=38.37 Aligned_cols=193 Identities=16% Similarity=0.166 Sum_probs=104.7
Q ss_pred HhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhH
Q 006984 372 NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEAS 451 (623)
Q Consensus 372 aaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaEas 451 (623)
.+|...|..++.++..+|.+......+|..+...|.+...-+.-++..-. .-+...+++-..++..++. +....
T Consensus 5 ~d~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~---~~i~e~~~~~~~~~~~i~~---~~~er 78 (207)
T PF05010_consen 5 KDLDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIA---QMIEEKQKQKELSEAEIQK---LLKER 78 (207)
T ss_pred HhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHhhHHhHHHHHHH---HHhhH
Confidence 35666677777777777777777777777777777766665555544311 1111112221111111111 11111
Q ss_pred HHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHH----HHHHHHHhHHHHh
Q 006984 452 QEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL----ESSLNRANIEKAA 527 (623)
Q Consensus 452 ~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksL----E~sl~kA~q~k~~ 527 (623)
+. .|..+.-++.-.-||-.++++...-++.+-..=-.|-.+--+...-|.-.+.|...| +.+++.||..=+.
T Consensus 79 dq----~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~ 154 (207)
T PF05010_consen 79 DQ----AYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQ 154 (207)
T ss_pred HH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 344444444444444444444443322221111111111234444444444444444 4566777777777
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 006984 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (623)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t 574 (623)
.-+..........-.+.+.+..+.-|+.+|-.-+.+|.-|..=||..
T Consensus 155 v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeL 201 (207)
T PF05010_consen 155 VRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDEL 201 (207)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777788888888888888888888888887777753
No 80
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.10 E-value=8 Score=42.48 Aligned_cols=33 Identities=6% Similarity=0.099 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006984 543 VMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (623)
Q Consensus 543 V~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (623)
....+.+..+|+-+.-....-|..+...++++.
T Consensus 350 ~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 350 IPEVEAELTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777888888888888888888887765
No 81
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=92.96 E-value=25 Score=41.79 Aligned_cols=123 Identities=23% Similarity=0.260 Sum_probs=76.5
Q ss_pred HHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHh----hhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHh
Q 006984 369 EQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT----DTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQA 444 (623)
Q Consensus 369 ~EVaaLerrIelLKEel~rAEsRa~tAesKle~Ls----eTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA 444 (623)
..|..|+..|..|++-+.--..|+..-+..+..++ +-+.+|++..++-.+. |-+|.+.+
T Consensus 349 ~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~k-----------e~eleeL~------ 411 (786)
T PF05483_consen 349 FVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKNNK-----------EVELEELK------ 411 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhh-----------HHHHHHHH------
Confidence 36779999999999999988999998888876554 4555666555533332 44455554
Q ss_pred hhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHH
Q 006984 445 KVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIE 524 (623)
Q Consensus 445 ~asaEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ 524 (623)
..-+.... ++++-.+.+.+.|.|++.-. +|.-=|......+-+|+..+..+-..
T Consensus 412 -~~L~e~qk----ll~ekk~~eki~E~lq~~eq---------------------el~~llq~~ekev~dLe~~l~~~~~~ 465 (786)
T PF05483_consen 412 -KILAEKQK----LLDEKKQFEKIAEELQGTEQ---------------------ELTGLLQIREKEVHDLEIQLTTIKES 465 (786)
T ss_pred -HHHHHHHH----HHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 33333333 68888888888887776521 22222445555556666666655555
Q ss_pred HHhhHHHHHH
Q 006984 525 KAASAKEVNH 534 (623)
Q Consensus 525 k~~tlKeae~ 534 (623)
+-.|.+....
T Consensus 466 eq~yskQVee 475 (786)
T PF05483_consen 466 EQHYSKQVEE 475 (786)
T ss_pred hHHHHHHHHH
Confidence 5555444433
No 82
>PRK11281 hypothetical protein; Provisional
Probab=92.89 E-value=6.9 Score=48.35 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=23.2
Q ss_pred hhccchhhHHHHHHHHHhhHHHHHHHHHHHh
Q 006984 492 VLSEDNFELKNKQSFMRDKIKILESSLNRAN 522 (623)
Q Consensus 492 ~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~ 522 (623)
-+.+.|.+|.++|-....++..+-....++.
T Consensus 282 ~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~ 312 (1113)
T PRK11281 282 QELEINLQLSQRLLKATEKLNTLTQQNLRVK 312 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557799999999999998888765554433
No 83
>PRK09039 hypothetical protein; Validated
Probab=92.88 E-value=6.2 Score=42.45 Aligned_cols=49 Identities=12% Similarity=0.190 Sum_probs=30.5
Q ss_pred HHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHH
Q 006984 459 YSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL 514 (623)
Q Consensus 459 y~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksL 514 (623)
+..|.++-.-|+-|+..+...+...+.+|.+.. +....|..++.+|...
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~-------~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALEAALDASEKRDR-------ESQAKIADLGRRLNVA 184 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 444556666666666666666666666666665 6666666666666543
No 84
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=92.62 E-value=14 Score=38.10 Aligned_cols=56 Identities=16% Similarity=0.112 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 006984 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQ 554 (623)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe 554 (623)
.|.-+|..++++...||..+......=..-..+....-.-.+.-+.++..++.+..
T Consensus 227 ~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 227 SLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 66666777777777777776665555444444444444444444444444444443
No 85
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=92.20 E-value=7.4 Score=39.02 Aligned_cols=145 Identities=22% Similarity=0.289 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh----HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHH
Q 006984 336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTS----QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (623)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~~A~aklEes----E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELer 411 (623)
+.+||+||..||-+-..++..+.......-.+ +.+..+=++....+-..--.-.+.+..|+++|..|.+ +|+-
T Consensus 6 LK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEK---QLey 82 (178)
T PF14073_consen 6 LKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEK---QLEY 82 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 56899999999988777777665432221111 1222222222222222222334566777777777765 4555
Q ss_pred HhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 006984 412 EINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (623)
Q Consensus 412 elk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~ 491 (623)
+++.+++- ..||-..+|+|..--+ .. -.-..++++++++ ++..|..|.
T Consensus 83 MRkmv~~a---e~er~~~le~q~~l~~-----------e~--------------~~~~~~~~~klek----Le~LE~E~~ 130 (178)
T PF14073_consen 83 MRKMVESA---EKERNAVLEQQVSLQR-----------ER--------------QQDQSELQAKLEK----LEKLEKEYL 130 (178)
T ss_pred HHHHHHHH---HHhhhHHHHHHHHHHH-----------Hh--------------ccchhhHHHHHHH----HHHHHHHHH
Confidence 66655553 3466666666543211 00 0111223444443 335666788
Q ss_pred hhccchhhHHHHHHHHHhhHHHHHHHHHHHh
Q 006984 492 VLSEDNFELKNKQSFMRDKIKILESSLNRAN 522 (623)
Q Consensus 492 ~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~ 522 (623)
.|.--=++-..+++.||..|..-.
T Consensus 131 -------rLt~~Q~~ae~Ki~~LE~KL~eEe 154 (178)
T PF14073_consen 131 -------RLTATQSLAETKIKELEEKLQEEE 154 (178)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555588889999988876543
No 86
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.10 E-value=1.8 Score=50.82 Aligned_cols=112 Identities=16% Similarity=0.208 Sum_probs=61.6
Q ss_pred hHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHH
Q 006984 458 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTK 537 (623)
Q Consensus 458 ky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak 537 (623)
+|+.++++-..+. .. ++.=+..+..+.-.||+...+.-+||.-++.+++.|.++++++..+...--..++.+++
T Consensus 601 R~e~a~d~Qe~L~---~R---~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~ 674 (717)
T PF10168_consen 601 RYEEAKDKQEKLM---KR---VDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKS 674 (717)
T ss_pred HHHHHHHHHHHHH---HH---HHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5666665554444 22 22222233344556888888999999999999999999999987766654333333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006984 538 LMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (623)
Q Consensus 538 ~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (623)
.-...+.==....+++.+-|....++.+.+..++++.+
T Consensus 675 ~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~ 712 (717)
T PF10168_consen 675 PKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIK 712 (717)
T ss_pred ccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221111123334444444444444444444444443
No 87
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.07 E-value=29 Score=40.45 Aligned_cols=196 Identities=18% Similarity=0.214 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCC
Q 006984 343 VKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDS 422 (623)
Q Consensus 343 vksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~ 422 (623)
...-+.++.+.+.+++......+..+.++..+...+..+.+++.+.+.....-+..+....++. ..|.+.
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~-------~lL~d~--- 392 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTV-------ELLPDA--- 392 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhcCc---
Confidence 3444555666666666666666666666666666666666665555554444444433333222 222221
Q ss_pred cchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHh-HHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHH
Q 006984 423 NTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWD-METLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELK 501 (623)
Q Consensus 423 deEk~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~d-me~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELe 501 (623)
|..+...+ ++++++.. +.-++.. .+.+=--|..++.+.+.....-+..+. ..-
T Consensus 393 --------e~ni~kL~-------~~v~~s~~----rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~-------~~~ 446 (594)
T PF05667_consen 393 --------EENIAKLQ-------ALVEASEQ----RLVELAQQWEKHRAPLIEEYRRLKEKASNRESESK-------QKL 446 (594)
T ss_pred --------HHHHHHHH-------HHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHH-------HHH
Confidence 22232222 22222221 1111110 001111122233333333333333344 555
Q ss_pred HHHHHHHhhHHHHHHHHHHH----hHHHHhh---HHH-----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006984 502 NKQSFMRDKIKILESSLNRA----NIEKAAS---AKE-----VNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVE 569 (623)
Q Consensus 502 EEL~~l~~~lksLE~sl~kA----~q~k~~t---lKe-----ae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~e 569 (623)
++++.++..++.++.-+..- .+-+..| =|+ --.|.--|-..|.|-..+++++-.+.-.+.++.+.+..
T Consensus 447 ~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~g 526 (594)
T PF05667_consen 447 QEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTG 526 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777665443322 2222222 112 12233344556777788889999999999999999999
Q ss_pred HHhhc
Q 006984 570 KLQYS 574 (623)
Q Consensus 570 kld~t 574 (623)
+|+.|
T Consensus 527 kL~Rt 531 (594)
T PF05667_consen 527 KLDRT 531 (594)
T ss_pred HHHhH
Confidence 99987
No 88
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=92.01 E-value=42 Score=42.19 Aligned_cols=81 Identities=21% Similarity=0.270 Sum_probs=45.7
Q ss_pred HHHHHHhhhhhhhHHHhhH--------------HHhhhHHHHHhhhhhhh-HHHHHHHHHHHHHHHHHHhccchHHHHhh
Q 006984 217 LRMLEKSLARELDLEKKIS--------------ELNQNEEQLKLKLHHTE-QVAFRMEEAAEVVWGRFLEAENSAEVLMG 281 (623)
Q Consensus 217 LrMLekSla~eldLEkkL~--------------~s~~~eeeLk~kL~~~e-qe~~~lEE~~~~~~er~~EAENa~EvL~g 281 (623)
+.|||.++.+++--=+++. +..+..+.++....... .....+--....+.+||.+.+|-...|..
T Consensus 436 ~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~ 515 (1317)
T KOG0612|consen 436 LQILEQSLVNEMQEKEKLDEKCQAVAELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEA 515 (1317)
T ss_pred hhhcccchhhHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 6788888888743222222 22222233332222222 12222334556677888888888888887
Q ss_pred hhHHHHhhhhHHhhhc
Q 006984 282 ISKEMLGRFQIVQFNL 297 (623)
Q Consensus 282 ~skel~gkLq~~qf~L 297 (623)
....+...|..+|--.
T Consensus 516 ~~~~~~eele~~q~~~ 531 (1317)
T KOG0612|consen 516 LVRQLEEELEDAQKKN 531 (1317)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777665443
No 89
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=91.57 E-value=43 Score=41.76 Aligned_cols=62 Identities=21% Similarity=0.291 Sum_probs=36.7
Q ss_pred HHHHhHHHHHHHHhhhhhh-----hhhhhhhhh---hh-------hhhhccchhhHHHHHHHHHhhHHHHHHHHHHH
Q 006984 460 SAIWDMETLIEDLKSKVSK-----AESKTESVE---EQ-------CIVLSEDNFELKNKQSFMRDKIKILESSLNRA 521 (623)
Q Consensus 460 ~ei~dme~vIEdLk~Kl~r-----AE~RaE~aE---sK-------c~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA 521 (623)
-.+.+.+.-++.|+..+.. +|..++.++ .+ +.-+.+.|.+|.++|.....++..|-....++
T Consensus 215 ~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~ 291 (1109)
T PRK10929 215 KRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQA 291 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666655432 222222222 12 23344779999999999999988875554443
No 90
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=91.41 E-value=16 Score=36.18 Aligned_cols=12 Identities=33% Similarity=0.479 Sum_probs=4.5
Q ss_pred HHHhhHHHHHHH
Q 006984 506 FMRDKIKILESS 517 (623)
Q Consensus 506 ~l~~~lksLE~s 517 (623)
-++.++..+|..
T Consensus 169 r~e~ki~~~ea~ 180 (221)
T PF04012_consen 169 RMEEKIEEMEAR 180 (221)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 91
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=91.35 E-value=0.058 Score=62.19 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 006984 338 TMKEKVKSLEEQLKESEIRLQNANACF 364 (623)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~akl 364 (623)
.+.++...+++.+++...+....+.++
T Consensus 118 ~l~~~~~~le~el~~~~e~~~~~k~~l 144 (722)
T PF05557_consen 118 QLEEREEELEEELEEAEEELEQLKRKL 144 (722)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 92
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.34 E-value=33 Score=40.03 Aligned_cols=71 Identities=13% Similarity=0.135 Sum_probs=40.2
Q ss_pred hHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhh
Q 006984 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (623)
Q Consensus 367 sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~a 446 (623)
...-..-|+.++..++.++..||.+++.=..+...... ++. ...+.++..++.||..++.++..|.+
T Consensus 192 ~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~------------~~~-~~~~~~L~~l~~ql~~a~~~~~~a~a 258 (754)
T TIGR01005 192 NTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMG------------NNA-TLATQQLAELNTELSRARANRAAAEG 258 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc------------CCc-cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777777777777777766665554433321 121 11235677777777776665555554
Q ss_pred hhHh
Q 006984 447 SSEA 450 (623)
Q Consensus 447 saEa 450 (623)
-...
T Consensus 259 ~~~~ 262 (754)
T TIGR01005 259 TADS 262 (754)
T ss_pred HHHH
Confidence 4443
No 93
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=91.33 E-value=29 Score=39.46 Aligned_cols=9 Identities=33% Similarity=0.582 Sum_probs=6.2
Q ss_pred CCcceeecc
Q 006984 589 DDKELLINP 597 (623)
Q Consensus 589 ~~~~~~~~~ 597 (623)
|.-+|+|.|
T Consensus 420 d~v~f~~~~ 428 (563)
T TIGR00634 420 DQVEFLFSA 428 (563)
T ss_pred eEEEEEEec
Confidence 556788865
No 94
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=91.25 E-value=25 Score=38.05 Aligned_cols=151 Identities=22% Similarity=0.328 Sum_probs=102.0
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhH----HHHHHHhHHHHHh
Q 006984 244 LKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESE----LKSKLGDFIEQLK 319 (623)
Q Consensus 244 Lk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~~s~~REse----l~sKL~~~~eqL~ 319 (623)
|.-||-.-.|-+..||-.++++.-|+..|-+=. ++=|+..-||.-+.+|+.| |+.|+..-+-+|.
T Consensus 75 L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~-----------dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lk 143 (305)
T PF14915_consen 75 LNSKLEKEKQNKERLETEIESYRSRLAAAIQDH-----------DQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLK 143 (305)
T ss_pred HhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhH-----------HHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHH
Confidence 445555556778889999999999998875432 3557778888889999988 6666666665555
Q ss_pred hhh-HHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHH
Q 006984 320 AKD-MVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEK 398 (623)
Q Consensus 320 ~k~-~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesK 398 (623)
... ..-++|... ++-+.+|..++..+=+.|++--.-|.++.-.+..++.++..|+...+.=+.++.+.-.+-+..+.+
T Consensus 144 d~ne~LsQqLska-esK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eER 222 (305)
T PF14915_consen 144 DNNEILSQQLSKA-ESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEER 222 (305)
T ss_pred HHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 432 233444443 555555655555555555555555666666666667788888888888888888877777777766
Q ss_pred HHHHhhhh
Q 006984 399 VTQLTDTN 406 (623)
Q Consensus 399 le~LseTN 406 (623)
+.++---|
T Consensus 223 L~QlqsEN 230 (305)
T PF14915_consen 223 LSQLQSEN 230 (305)
T ss_pred HHHHHHHH
Confidence 66654433
No 95
>PRK09039 hypothetical protein; Validated
Probab=91.24 E-value=7.6 Score=41.82 Aligned_cols=49 Identities=6% Similarity=-0.006 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchh
Q 006984 254 VAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQ 302 (623)
Q Consensus 254 e~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~~s~~ 302 (623)
+...+++....+..+..+--.+...=++.+..+..+|..++..|.++..
T Consensus 47 ~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~ 95 (343)
T PRK09039 47 EISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEA 95 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3333344444444444332222222244555566666666665554433
No 96
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.21 E-value=13 Score=39.40 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHH
Q 006984 252 EQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELK 308 (623)
Q Consensus 252 eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~~s~~REsel~ 308 (623)
...+.+--=.|...|=-|= ...+.|+-..|..++..++.|.........-|.
T Consensus 125 ~~vK~~aRl~aK~~WYeWR-----~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~ 176 (325)
T PF08317_consen 125 QLVKTYARLEAKKMWYEWR-----MQLLEGLKEGLEENLELLQEDYAKLDKQLEQLD 176 (325)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555556777787775 677888888888888888888766655544443
No 97
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=91.05 E-value=0.1 Score=60.19 Aligned_cols=169 Identities=18% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhH
Q 006984 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSE 449 (623)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaE 449 (623)
+.+.+...+..|++++.+.+.-......+|+.+.....+|..+...|...+ +.+..|--.+-+.+ ..
T Consensus 240 ~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A----~~a~~LrDElD~lR-------~~-- 306 (713)
T PF05622_consen 240 ELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEA----REARALRDELDELR-------EK-- 306 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHH-------HH--
Confidence 445666667777777776666666666666666665555555544444432 12222222222222 11
Q ss_pred hHHHHHhhhHHHHHhHHHHHHHHhhhhhh---hhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHH
Q 006984 450 ASQEQQSMLYSAIWDMETLIEDLKSKVSK---AESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKA 526 (623)
Q Consensus 450 as~eqQ~mky~ei~dme~vIEdLk~Kl~r---AE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~ 526 (623)
-+.+.++++.|+-.|.|+.- -..|.+..+.++..|=+++..|+++|+-++..-. .++.+...
T Consensus 307 ---------a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~----qle~~k~q-- 371 (713)
T PF05622_consen 307 ---------ADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKS----QLEEYKKQ-- 371 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHH--
Confidence 11233333334333333322 2234445556677777788888888876544322 22222111
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006984 527 ASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLV 568 (623)
Q Consensus 527 ~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ 568 (623)
+.+++.+......-+.+|..++.+|+..+..+..+...+.
T Consensus 372 --i~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~ 411 (713)
T PF05622_consen 372 --IQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQ 411 (713)
T ss_dssp ------------------------------------------
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333333333444455555555555554444444333
No 98
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=90.58 E-value=49 Score=40.30 Aligned_cols=275 Identities=18% Similarity=0.207 Sum_probs=132.4
Q ss_pred HHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHH
Q 006984 230 LEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKS 309 (623)
Q Consensus 230 LEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~~s~~REsel~s 309 (623)
||-.|-+-..-...|..++.-.|-++..|-++...+-.-+-+++--+|-+.. ||...+-.|+|-..-=--+-.
T Consensus 97 lEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~s-------rlh~le~eLsAk~~eIf~~~~ 169 (1265)
T KOG0976|consen 97 LEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNS-------RLHKLEDELSAKAHDIFMIGE 169 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHhhhhHHHHHHHH
Confidence 4555555555566777777777777777777666665555555544443333 222222233322110000111
Q ss_pred HHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHh---hh---HHHHHhHHHHHHHHHh
Q 006984 310 KLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQ---TS---QEQLNEMDNFIESLKE 383 (623)
Q Consensus 310 KL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklE---es---E~EVaaLerrIelLKE 383 (623)
-|...-+.|...+..++.+.+...++...+..|++.+-+.+..-....+.....-+ .. +-++++--....-++-
T Consensus 170 ~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~rk 249 (1265)
T KOG0976|consen 170 DLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLRK 249 (1265)
T ss_pred HHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhh
Confidence 23333333433444444333333455555555555554444333222111100000 00 1122222233333344
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHH--HHHhhhHHH
Q 006984 384 SLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQ--EQQSMLYSA 461 (623)
Q Consensus 384 el~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaEas~--eqQ~mky~e 461 (623)
..++-+++- ..+.-.|+++.+.+..|+-..+.-.+-...-|-.+|+.+.-|+.-+.+...++ -.|+-+|-.
T Consensus 250 ~~s~i~E~d-------~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh 322 (1265)
T KOG0976|consen 250 TCSMIEEQD-------MDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLH 322 (1265)
T ss_pred hhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 444444333 33444555555554444443322222334445555555555554444443333 346678887
Q ss_pred HHhHH--HHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHH
Q 006984 462 IWDME--TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEK 525 (623)
Q Consensus 462 i~dme--~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k 525 (623)
...|. .-+-|++-.|..|.-.++++-.|.- +|+.+=....-++-++...+.-....+
T Consensus 323 ~enmkltrqkadirc~LlEarrk~egfddk~~-------eLEKkrd~al~dvr~i~e~k~nve~el 381 (1265)
T KOG0976|consen 323 LENMKLTRQKADIRCALLEARRKAEGFDDKLN-------ELEKKRDMALMDVRSIQEKKENVEEEL 381 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 77776 3455667777777777777777776 777777776666666655544433333
No 99
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.42 E-value=23 Score=39.00 Aligned_cols=20 Identities=35% Similarity=0.581 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 006984 333 NSEVLTMKEKVKSLEEQLKE 352 (623)
Q Consensus 333 esEv~sLqkKvksLE~qLde 352 (623)
.+.+..++.++..++.++..
T Consensus 274 hP~v~~l~~qi~~l~~~l~~ 293 (498)
T TIGR03007 274 HPDVIATKREIAQLEEQKEE 293 (498)
T ss_pred ChHHHHHHHHHHHHHHHHHh
Confidence 45555555555555555443
No 100
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.35 E-value=40 Score=41.83 Aligned_cols=227 Identities=18% Similarity=0.205 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHH--HHHhHHHHHhhhhHHHHHhhcCCh
Q 006984 256 FRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKS--KLGDFIEQLKAKDMVLQKLESTKN 333 (623)
Q Consensus 256 ~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~~s~~REsel~s--KL~~~~eqL~~k~~~lekl~~s~e 333 (623)
-.+..++..+-+|+=..++.+++..+..-.+..-++.+.-.++.- |..|-+ .|=...++-......+..+ .
T Consensus 237 s~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~k---e~~l~erp~li~~ke~~~~~k~rl~~~----~ 309 (1141)
T KOG0018|consen 237 SRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEK---EEKLAERPELIKVKENASHLKKRLEEI----E 309 (1141)
T ss_pred HHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhHHhhcchhhccchhHHHHh----h
Confidence 334445555666677777777777766655555444443322210 111111 0000000111111111111 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHH----HHHHHHhHH-------HhhhhhHHHHHHHHHHH
Q 006984 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDN----FIESLKESL-------YGAESRAESAEEKVTQL 402 (623)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLer----rIelLKEel-------~rAEsRa~tAesKle~L 402 (623)
..+.+.++....+-.+++...-++..+..+-++.+.++...-+ .+.+.++.+ +.|.-++ ...|
T Consensus 310 k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~------~~el 383 (1141)
T KOG0018|consen 310 KDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEA------LEEL 383 (1141)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhh------HHHH
Confidence 2333444444444444444444455555555555555554444 233333333 2222222 3333
Q ss_pred hhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhh
Q 006984 403 TDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESK 482 (623)
Q Consensus 403 seTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~R 482 (623)
.--|.+-...-..|.+ ...+...+|..++..+ .+.+..+.+++-+...+.-.....++++.++..-+.+
T Consensus 384 ~~ln~~~r~~~~~ld~----~~~~~~elE~r~k~l~-------~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~ 452 (1141)
T KOG0018|consen 384 EVLNRNMRSDQDTLDH----ELERRAELEARIKQLK-------ESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESL 452 (1141)
T ss_pred HHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Confidence 3333333333333332 2455667777777666 5556666666667777888888888889999999999
Q ss_pred hhhhhhhhhhhccchhhHHHHHHHHHhhHHH
Q 006984 483 TESVEEQCIVLSEDNFELKNKQSFMRDKIKI 513 (623)
Q Consensus 483 aE~aEsKc~~Lse~N~ELeEEL~~l~~~lks 513 (623)
...++++.. ++++||.-+...+-.
T Consensus 453 ~~~~~~~~~-------e~n~eL~~~~~ql~d 476 (1141)
T KOG0018|consen 453 VSSAEEEPY-------ELNEELVEVLDQLLD 476 (1141)
T ss_pred HhhhhhhHH-------HHHHHHHHHHHHHHh
Confidence 999999999 999999998777663
No 101
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=90.09 E-value=24 Score=35.98 Aligned_cols=113 Identities=20% Similarity=0.250 Sum_probs=64.3
Q ss_pred hhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHH
Q 006984 388 AESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMET 467 (623)
Q Consensus 388 AEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme~ 467 (623)
+-.|+..=-.||....++.++.+..+. +.+..|.+|++-..--++.|+++-+.-.. +...++-.+.
T Consensus 16 ~n~~L~~en~kL~~~ve~~ee~na~L~----------~e~~~L~~q~~s~Qqal~~aK~l~eEled----Lk~~~~~lEE 81 (193)
T PF14662_consen 16 NNQKLADENAKLQRSVETAEEGNAQLA----------EEITDLRKQLKSLQQALQKAKALEEELED----LKTLAKSLEE 81 (193)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 344555555666666666666666665 44566677777654333333333333322 3333333333
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHH
Q 006984 468 LIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL 514 (623)
Q Consensus 468 vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksL 514 (623)
.=--|.......|...-+...++..|-+.|-.|..|..-+..+.+.|
T Consensus 82 ~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 82 ENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 33333333444555556677777777777777777777777777666
No 102
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=89.48 E-value=27 Score=35.76 Aligned_cols=86 Identities=10% Similarity=0.137 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhh-----------
Q 006984 336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTD----------- 404 (623)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~Lse----------- 404 (623)
+..+.+.+..|+.+++....+...+..+..........+-.+-+.|...|.+-...+.....+...+..
T Consensus 47 ~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~ 126 (264)
T PF06008_consen 47 LDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQ 126 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHH
Confidence 444555566666666666666665555544433334444444444444444444444444444433333
Q ss_pred -hhHHHHHHhhhhhcCCC
Q 006984 405 -TNLELSEEINFLKGNND 421 (623)
Q Consensus 405 -TNdELerelk~Lesrs~ 421 (623)
.-.+..+.+..+++|.+
T Consensus 127 ~~l~ea~~mL~emr~r~f 144 (264)
T PF06008_consen 127 RALAEAQRMLEEMRKRDF 144 (264)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 34444555666666643
No 103
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.44 E-value=31 Score=36.32 Aligned_cols=40 Identities=13% Similarity=-0.055 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCceeeecc
Q 006984 546 LATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNA 585 (623)
Q Consensus 546 L~~ErdrLe~ql~s~keenK~L~ekld~t~~~~~~~~~~~ 585 (623)
+..++..++.++.....+...+...++.+...+|++-++.
T Consensus 244 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~AP~dG~V~ 283 (423)
T TIGR01843 244 VLEELTEAQARLAELRERLNKARDRLQRLIIRSPVDGTVQ 283 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEECCCCcEEE
Confidence 3345566666777777777777778888888888765554
No 104
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=89.34 E-value=46 Score=38.25 Aligned_cols=327 Identities=19% Similarity=0.220 Sum_probs=186.6
Q ss_pred chHHHHHHHHHHHHhhh--------hhhhHHHhhHHHhhhHHHHHhhhhhhhHH----HHHHHHHHHHHHHHHHhccchH
Q 006984 209 NADQQRHILRMLEKSLA--------RELDLEKKISELNQNEEQLKLKLHHTEQV----AFRMEEAAEVVWGRFLEAENSA 276 (623)
Q Consensus 209 t~eqqR~iLrMLekSla--------~eldLEkkL~~s~~~eeeLk~kL~~~eqe----~~~lEE~~~~~~er~~EAENa~ 276 (623)
|.+||---=+|.||.|- +=|+++-.-. ..++||+......-+- ...+-+.-..+++++-||.-.+
T Consensus 218 tl~qq~~~e~~Vek~lfdY~~~~Y~~fl~~~~~~~---~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s 294 (622)
T COG5185 218 TLDQQDRYELMVEKLLFDYFTESYKSFLKLEDNYE---PSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKIS 294 (622)
T ss_pred hHhhccHHHHHHHHHHHHHHHHHHHHHhcCCCccC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677444567777653 3344444332 3566777766544443 3345555666777777777665
Q ss_pred HHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 006984 277 EVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIR 356 (623)
Q Consensus 277 EvL~g~skel~gkLq~~qf~L~~s~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQ 356 (623)
+-. +.+-.|--.++.|++-..--++-+++|-..-.-.++.-..+.++ +++|+..|+.+...|-.|+..-...
T Consensus 295 ~~i----~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~----kEeei~~L~~~~d~L~~q~~kq~Is 366 (622)
T COG5185 295 QKI----KTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIEL----KEEEIKALQSNIDELHKQLRKQGIS 366 (622)
T ss_pred HHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHhcCCC
Confidence 532 56666777777777655555555555544333222222222221 5788888888888888777764333
Q ss_pred HH---HhHhhHhhhHHHHHhHHHHHHH----HHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCC--------
Q 006984 357 LQ---NANACFQTSQEQLNEMDNFIES----LKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNND-------- 421 (623)
Q Consensus 357 L~---~A~aklEesE~EVaaLerrIel----LKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~-------- 421 (623)
.. ..++.-+..--++.-++-.+.. +++.=..|+.++.+.+-++-.+-..++.+.+-+..+...+.
T Consensus 367 ~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~~i~~~~nd~~l~iN~ 446 (622)
T COG5185 367 TEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINI 446 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhcCCCCceeecc
Confidence 22 2222222211123233323322 33444567788888888887777777777766544443321
Q ss_pred --------CcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHh--h-hHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhh
Q 006984 422 --------SNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQS--M-LYSAIWDMETLIEDLKSKVSKAESKTESVEEQC 490 (623)
Q Consensus 422 --------~deEk~~~LE~QLKEa~~QLqhA~asaEas~eqQ~--m-ky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc 490 (623)
.-.+++--++..|... +-+.....|+ . +-..+..+.++|-+|...+.+-|.|+-.|=++|
T Consensus 447 E~~~~~~sg~~~~I~~~i~eln~~---------i~~~~~~e~nksi~Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~ 517 (622)
T COG5185 447 EQLFPKGSGINESIKKSILELNDE---------IQERIKTEENKSITLEEDIKNLKHDINELTQILEKLELELSEANSKF 517 (622)
T ss_pred ccCCccccCchHhHHHHHHHHhHH---------HHHHHHHHhccceeHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1144454455444432 1111112222 2 345678888999999999999999999999999
Q ss_pred hhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhH---H-HHHHHHHHHHHHHHHHHHHHH
Q 006984 491 IVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRT---K-LMMEMVMQLATQRELIQKQVY 558 (623)
Q Consensus 491 ~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Ra---k-~aE~lV~KL~~ErdrLe~ql~ 558 (623)
-++-++|. +|+...+..+.-||..+.+.+-.--...=+++.|- . .+.++.-.+...|..++.++.
T Consensus 518 ~~~ke~~e---~e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~vqs~~i~ld~~~~~~n~~r~~i~k~V~ 586 (622)
T COG5185 518 ELSKEENE---RELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQSTEIKLDELKVDLNRKRYKIHKQVI 586 (622)
T ss_pred HHHHHhhH---HHHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 98888775 66777777777888777776654433333333331 1 123444445555555555543
No 105
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.64 E-value=25 Score=35.29 Aligned_cols=99 Identities=18% Similarity=0.270 Sum_probs=75.0
Q ss_pred hHHHHHh-HHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh--------
Q 006984 458 LYSAIWD-METLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS-------- 528 (623)
Q Consensus 458 ky~ei~d-me~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~t-------- 528 (623)
-|..|.+ =+.+|.-||.++.-...+.+..+.-..-++..|..|.+-|...+..+..|...+..+..-+.+.
T Consensus 17 YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~ 96 (201)
T PF13851_consen 17 YYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLK 96 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666554 4588999999998888888888888888999999999999999999999999998887666543
Q ss_pred -----HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006984 529 -----AKEVNHRTKLMMEMVMQLATQRELIQKQ 556 (623)
Q Consensus 529 -----lKeae~Rak~aE~lV~KL~~ErdrLe~q 556 (623)
++++.--.++.+.-+.++..|||.|...
T Consensus 97 ~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 97 ELEKELKDLKWEHEVLEQRFEKLEQERDELYRK 129 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555566666666666654
No 106
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=88.10 E-value=62 Score=38.12 Aligned_cols=370 Identities=19% Similarity=0.192 Sum_probs=170.1
Q ss_pred HHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhh
Q 006984 92 IEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQS 171 (623)
Q Consensus 92 ~eka~efDlL~gildsEv~ele~~~~~lq~~I~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~~e~~~ei~~qs 171 (623)
.-|-|-|+=|-.-||+++++|.+-=++.+. .|+...+-. +-|=.- -=+.|+.-..--||++|..|--+-+-|
T Consensus 11 ~Wk~~dle~LQreLd~~~~~l~~~Q~~S~~----srk~L~e~t---refkk~-~pe~k~k~~~~llK~yQ~EiD~LtkRs 82 (629)
T KOG0963|consen 11 YWKRFDLERLQRELDAEATEIAQRQDESEI----SRKRLAEET---REFKKN-TPEDKLKMVNPLLKSYQSEIDNLTKRS 82 (629)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhhhhHHH----HHHHHHHhH---HHHhcc-CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888999999999999887665543 333322211 111110 015688888888999999999887766
Q ss_pred Hhhhhh----hhhcccCCCcccccccccCCccccccccccc-chHHHHHHHHHHHHhhhhhhhHHHhhHHHhhhHHHHHh
Q 006984 172 AKFQRV----LSYFIHGNNDEALEFSANGQLSNINGKSKMK-NADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKL 246 (623)
Q Consensus 172 a~f~r~----~~~~~~~~~~~~~~~~e~~~~~~~~~~~~mq-t~eqqR~iLrMLekSla~eldLEkkL~~s~~~eeeLk~ 246 (623)
--=+.+ -..+..-+.... + ..+ -.+-..+.+ ..++.|...+-|++-...=.|++++ +.....|+.
T Consensus 83 k~aE~afl~vye~L~eaPDP~p--l-l~s---a~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~q----q~~v~~l~e 152 (629)
T KOG0963|consen 83 KFAEAAFLDVYEKLIEAPDPVP--L-LAS---AAELLNKQQKASEENEELKEELEEVNNELADLKTQ----QVTVRNLKE 152 (629)
T ss_pred HhhHHHHHHHHHHHhhCCCCch--H-HHH---HHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhh----HHHHHhHHH
Confidence 433333 222222222111 0 000 011111111 3445556666666544333333332 223455555
Q ss_pred hhhhhhHH-HHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHH
Q 006984 247 KLHHTEQV-AFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVL 325 (623)
Q Consensus 247 kL~~~eqe-~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~~s~~REsel~sKL~~~~eqL~~k~~~l 325 (623)
++...++. .-+.+.++...|+..- .|..+...| +++..+..+-.+......=+.+.+.++..--+|.......
T Consensus 153 ~l~k~~~~~~~~ie~~a~~~e~~~~--q~~~e~e~~----L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~ 226 (629)
T KOG0963|consen 153 RLRKLEQLLEIFIENAANETEEKLE--QEWAEREAG----LKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKY 226 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Confidence 55444443 2345556667766542 233343333 3333333333333322222222222222222222111110
Q ss_pred HHhhcC-------ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh--------HHHHHhHHHHHHHHHhHHHhhhh
Q 006984 326 QKLEST-------KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS--------QEQLNEMDNFIESLKESLYGAES 390 (623)
Q Consensus 326 ekl~~s-------~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes--------E~EVaaLerrIelLKEel~rAEs 390 (623)
+.=... --.++-.-+.++-.+|.+......|+..++.+.... ...+..+++.|..|=.+|.+=++
T Consensus 227 dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~ 306 (629)
T KOG0963|consen 227 DEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEA 306 (629)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 000000 123334445555555555555555555555444332 33444566666666666655444
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHH
Q 006984 391 RAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIE 470 (623)
Q Consensus 391 Ra~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme~vIE 470 (623)
-+.....+... -+..||++++....-++.-+.-... |+ -|++|+.-+.|..
T Consensus 307 S~~~e~e~~~~------------------------qI~~le~~l~~~~~~leel~~kL~~----~s-DYeeIK~ELsiLk 357 (629)
T KOG0963|consen 307 SLVEEREKHKA------------------------QISALEKELKAKISELEELKEKLNS----RS-DYEEIKKELSILK 357 (629)
T ss_pred HHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHhh----hc-cHHHHHHHHHHHH
Confidence 33333322111 1233333333333222221111111 12 6999998887766
Q ss_pred HHhh-hhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHH
Q 006984 471 DLKS-KVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL 514 (623)
Q Consensus 471 dLk~-Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksL 514 (623)
...= ....|...-+.+..==..|-+.|..|..|++.||...-.+
T Consensus 358 ~ief~~se~a~~~~~~~~~leslLl~knr~lq~e~a~Lr~~n~~~ 402 (629)
T KOG0963|consen 358 AIEFGDSEEANDEDETAKTLESLLLEKNRKLQNENASLRVANSGL 402 (629)
T ss_pred HhhcCCcccccccccccchHHHHHHHHHhhhhHHHHHHhcccccc
Confidence 2221 1112222112222233456688888888888886554444
No 107
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=87.34 E-value=63 Score=37.40 Aligned_cols=123 Identities=12% Similarity=0.234 Sum_probs=54.6
Q ss_pred HHHhccchHHHHhhhhHHHHh--hhhHHhhhcccchhch-hHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHH
Q 006984 268 RFLEAENSAEVLMGISKEMLG--RFQIVQFNLNGSLQRE-SELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVK 344 (623)
Q Consensus 268 r~~EAENa~EvL~g~skel~g--kLq~~qf~L~~s~~RE-sel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvk 344 (623)
.+++.++..++|....+.+.| .+.....+|.....|- ++. .......++...+..+..+. .+...+..++.
T Consensus 160 ~la~~~~~~~~l~~Ai~~LlGl~~~~~L~~dl~~~~~~~~~~~--~~~~~~~~~~~le~el~~l~----~~~e~l~~~i~ 233 (650)
T TIGR03185 160 ALANPDRLASLLKEAIEVLLGLDLIDRLAGDLTNVLRRRKKSE--LPSSILSEIEALEAELKEQS----EKYEDLAQEIA 233 (650)
T ss_pred HHhccccchHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 466778888877766666654 3445566666643321 111 01111222222222222111 12222333333
Q ss_pred HHHHHHHHHHHHHHHhHhhHhhh----HHHHHhHHHHHHHHHhHHHhhhhhHHHHH
Q 006984 345 SLEEQLKESEIRLQNANACFQTS----QEQLNEMDNFIESLKESLYGAESRAESAE 396 (623)
Q Consensus 345 sLE~qLdes~eQL~~A~aklEes----E~EVaaLerrIelLKEel~rAEsRa~tAe 396 (623)
.++.+++..+.++..+...+... ..+...++..+..++.++.+++.++....
T Consensus 234 ~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~ 289 (650)
T TIGR03185 234 HLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELA 289 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333222211 33455667777777777666666665443
No 108
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=87.20 E-value=15 Score=37.86 Aligned_cols=122 Identities=29% Similarity=0.358 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchh
Q 006984 347 EEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKK 426 (623)
Q Consensus 347 E~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk 426 (623)
|....++..+|.........+...+..-+.++..|.++.-.|+.-+..-+.+-..+...+..|...-... ..+|
T Consensus 4 Er~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~------~eEk 77 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQ------EEEK 77 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH
Confidence 3334444444444444444445555566777888888888888777665555555555544444432211 1233
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhh
Q 006984 427 VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQ 489 (623)
Q Consensus 427 ~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsK 489 (623)
..|+..+.++. .. .. + +-.++.+++.-.+.|+.++..|....+.+-.+
T Consensus 78 -~~Le~e~~e~~-------~~--i~-~----l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~ 125 (246)
T PF00769_consen 78 -EQLEQELREAE-------AE--IA-R----LEEESERKEEEAEELQEELEEAREDEEEAKEE 125 (246)
T ss_dssp ----HHHHHHHH-------HH--HH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHH-------HH--HH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777765 11 11 1 34456666666777777777776644444434
No 109
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=87.02 E-value=0.36 Score=55.88 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHh
Q 006984 400 TQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQA 444 (623)
Q Consensus 400 e~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA 444 (623)
..+..-.++.++...-|+.......+++..|+.|+.+....|+..
T Consensus 484 ~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~~l~~~ 528 (713)
T PF05622_consen 484 EELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQKSLQEQ 528 (713)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344333333456777777776665444433
No 110
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=86.93 E-value=19 Score=33.91 Aligned_cols=26 Identities=8% Similarity=0.096 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006984 538 LMMEMVMQLATQRELIQKQVYSLTSE 563 (623)
Q Consensus 538 ~aE~lV~KL~~ErdrLe~ql~s~kee 563 (623)
.+...-+|.+.|+-|-+-++..++++
T Consensus 123 ~~~~~~tq~~~e~rkke~E~~kLk~r 148 (151)
T PF11559_consen 123 QLQQRKTQYEHELRKKEREIEKLKER 148 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555443
No 111
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=86.90 E-value=31 Score=33.39 Aligned_cols=94 Identities=21% Similarity=0.205 Sum_probs=50.1
Q ss_pred HHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhh
Q 006984 411 EEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQC 490 (623)
Q Consensus 411 relk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc 490 (623)
.+++--++.+..-.+++..||+.|.-+...++++..=|+.++. +|+.|+.+++..-+.....+...
T Consensus 10 ~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~--------------eie~L~~el~~lt~el~~L~~EL 75 (140)
T PF10473_consen 10 EKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKA--------------EIETLEEELEELTSELNQLELEL 75 (140)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445554445667777777777666666666666655554 23333333333333333333445
Q ss_pred hhhccchhhHHHHHHHHHhhHHHHHHHH
Q 006984 491 IVLSEDNFELKNKQSFMRDKIKILESSL 518 (623)
Q Consensus 491 ~~Lse~N~ELeEEL~~l~~~lksLE~sl 518 (623)
..|+..+-.|..+|.-...++..||...
T Consensus 76 ~~l~sEk~~L~k~lq~~q~kv~eLE~~~ 103 (140)
T PF10473_consen 76 DTLRSEKENLDKELQKKQEKVSELESLN 103 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555566666666666665555443
No 112
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=86.55 E-value=38 Score=34.07 Aligned_cols=48 Identities=13% Similarity=0.113 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhh
Q 006984 341 EKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGA 388 (623)
Q Consensus 341 kKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rA 388 (623)
--+..++++|.+....+..+.+.--..+.++...+..++..+.....|
T Consensus 31 q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~A 78 (219)
T TIGR02977 31 LIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELA 78 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444443333444555555555554444433
No 113
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=86.35 E-value=49 Score=35.09 Aligned_cols=143 Identities=22% Similarity=0.223 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHH-----
Q 006984 392 AESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME----- 466 (623)
Q Consensus 392 a~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme----- 466 (623)
++.....|..|+++|.+|-+.+...+..+. .++..| .+|--.|-.+.+.+
T Consensus 8 l~el~~h~~~L~~~N~~L~~~IqdtE~st~---~~Vr~l----------------------Lqqy~~~~~~i~~le~~~~ 62 (258)
T PF15397_consen 8 LQELKKHEDFLTKLNKELIKEIQDTEDSTA---LKVRKL----------------------LQQYDIYRTAIDILEYSNH 62 (258)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHhhHH---HHHHHH----------------------HHHHHHHHHHHHHHHccCh
Confidence 345566677788888888777776665431 222111 12222455555554
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHH
Q 006984 467 TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQL 546 (623)
Q Consensus 467 ~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL 546 (623)
.-+++++++|...+++ .+++.. .|..++..+..++......++-..-.++ +|--.|+=-|-.++.+|
T Consensus 63 ~~l~~ak~eLqe~eek---~e~~l~-------~Lq~ql~~l~akI~k~~~el~~L~TYkD---~EYPvK~vqIa~L~rql 129 (258)
T PF15397_consen 63 KQLQQAKAELQEWEEK---EESKLS-------KLQQQLEQLDAKIQKTQEELNFLSTYKD---HEYPVKAVQIANLVRQL 129 (258)
T ss_pred HHHHHHHHHHHHHHHH---HHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHH
Confidence 3466677777777753 556677 7777777777777766666665555555 66777777788888888
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHh
Q 006984 547 ATQRELIQKQVYSLTSENKLLVEKLQ 572 (623)
Q Consensus 547 ~~ErdrLe~ql~s~keenK~L~ekld 572 (623)
+.-.|+-++++-.+.+-.+..-..+-
T Consensus 130 q~lk~~qqdEldel~e~~~~el~~l~ 155 (258)
T PF15397_consen 130 QQLKDSQQDELDELNEMRQMELASLS 155 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887777666554443
No 114
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.32 E-value=82 Score=37.65 Aligned_cols=144 Identities=20% Similarity=0.257 Sum_probs=87.8
Q ss_pred HHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhh----hHHHHHhhcC---ChhHHHHHHHHHHHHHHH
Q 006984 277 EVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAK----DMVLQKLEST---KNSEVLTMKEKVKSLEEQ 349 (623)
Q Consensus 277 EvL~g~skel~gkLq~~qf~L~~s~~REsel~sKL~~~~eqL~~k----~~~lekl~~s---~esEv~sLqkKvksLE~q 349 (623)
+-+.|-...++..+.-.+++.++-..+|.+++--+...+-++... +..+-++... .+.++..+.--+..++++
T Consensus 115 ~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke 194 (716)
T KOG4593|consen 115 EALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKE 194 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788888888888899999999999988888777777666542 2222122111 234444444445555556
Q ss_pred HHHHHHHHHHhHhhHhh---hHHHHHhHHHHHHHHHhHHHhhhhhHH------HHHHHHHHHhhhhHHHHHHhhhhhcCC
Q 006984 350 LKESEIRLQNANACFQT---SQEQLNEMDNFIESLKESLYGAESRAE------SAEEKVTQLTDTNLELSEEINFLKGNN 420 (623)
Q Consensus 350 Ldes~eQL~~A~aklEe---sE~EVaaLerrIelLKEel~rAEsRa~------tAesKle~LseTNdELerelk~Lesrs 420 (623)
++..-.|+....-+.-+ ...++++-+-.+......++..++-.. .-.+.++.+..++.+...+++.++.+.
T Consensus 195 ~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~ 274 (716)
T KOG4593|consen 195 LDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLREELATLRENR 274 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66555555544433322 244555666666666666666643321 234566677777777777777776653
No 115
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=86.27 E-value=86 Score=37.86 Aligned_cols=122 Identities=22% Similarity=0.340 Sum_probs=65.6
Q ss_pred HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhh
Q 006984 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS 447 (623)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~as 447 (623)
+.++-.|+..-..|+..+.++...+.....++.++.....++..++..++... ...|.||+-.+ .+
T Consensus 595 ~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~-------s~~E~ql~~~~-------e~ 660 (769)
T PF05911_consen 595 EEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESN-------SLAETQLKAMK-------ES 660 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-------HH
Confidence 44666666666777777777777777777777777777777777777555542 33444444332 11
Q ss_pred hHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhh
Q 006984 448 SEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDK 510 (623)
Q Consensus 448 aEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~ 510 (623)
-+..+-+-...-.++..+-.-|.-|..++.+-...-+-++.||. +|+++|..+...
T Consensus 661 ~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~-------~Le~el~r~~~~ 716 (769)
T PF05911_consen 661 YESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCR-------ELEEELERMKKE 716 (769)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHH-------HHHHHHHhhhcc
Confidence 11111100001112222222333333444444444445667888 888888877543
No 116
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=85.71 E-value=80 Score=36.96 Aligned_cols=31 Identities=23% Similarity=0.346 Sum_probs=15.9
Q ss_pred HHHHhHHHHHHHHHhHHHhhhhhHHHHHHHH
Q 006984 369 EQLNEMDNFIESLKESLYGAESRAESAEEKV 399 (623)
Q Consensus 369 ~EVaaLerrIelLKEel~rAEsRa~tAesKl 399 (623)
+++++++..+...+.+...|+.|+++....+
T Consensus 237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l 267 (754)
T TIGR01005 237 QQLAELNTELSRARANRAAAEGTADSVKKAL 267 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555444433
No 117
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=85.70 E-value=88 Score=37.44 Aligned_cols=103 Identities=20% Similarity=0.138 Sum_probs=62.7
Q ss_pred HhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh--------------
Q 006984 463 WDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS-------------- 528 (623)
Q Consensus 463 ~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~t-------------- 528 (623)
.-+...|-.|+......+-+ ++ .|++.++.+.++...+...+-...+..+.+
T Consensus 506 ~~l~~~i~~l~~~~~~~~~~-------i~-------~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~L 571 (698)
T KOG0978|consen 506 SKLEEQILTLKASVDKLELK-------IG-------KLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDL 571 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HH-------HHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455554444444 44 555555555555555555555555444444
Q ss_pred ---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCc
Q 006984 529 ---AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSS 579 (623)
Q Consensus 529 ---lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~~~~~ 579 (623)
+...+..-+-+.+.+..+..+++.+......+-+++..|..++..+++..+
T Consensus 572 q~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 572 QIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 233344455566667777777777777788888888888888888886655
No 118
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=84.86 E-value=1.2e+02 Score=38.46 Aligned_cols=123 Identities=14% Similarity=0.249 Sum_probs=73.0
Q ss_pred HHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHH-HHHhHhhHhhhHHHHHhHHHHHHHHHhHHH
Q 006984 308 KSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIR-LQNANACFQTSQEQLNEMDNFIESLKESLY 386 (623)
Q Consensus 308 ~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQ-L~~A~aklEesE~EVaaLerrIelLKEel~ 386 (623)
...|..+++++..-...|+.+... .+.+..+....+.|... +......+-....++..+.+.+..+..++.
T Consensus 222 i~~l~e~~~~~~~~~~~le~l~~~--------~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (1353)
T TIGR02680 222 LTDVADALEQLDEYRDELERLEAL--------ERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELE 293 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666555555544432 12333333444444442 222222222335677778888888888888
Q ss_pred hhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCC-CcchhhhhHHHHHHHHH
Q 006984 387 GAESRAESAEEKVTQLTDTNLELSEEINFLKGNND-SNTKKVGILENQLRDLE 438 (623)
Q Consensus 387 rAEsRa~tAesKle~LseTNdELerelk~Lesrs~-~deEk~~~LE~QLKEa~ 438 (623)
.++.+...++.++..+...-.++..++..|++... .+-+....++.|++...
T Consensus 294 ~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~ 346 (1353)
T TIGR02680 294 TAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQ 346 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888877632 11233344444555443
No 119
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=84.84 E-value=54 Score=39.39 Aligned_cols=122 Identities=25% Similarity=0.268 Sum_probs=67.4
Q ss_pred HHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhh
Q 006984 379 ESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSML 458 (623)
Q Consensus 379 elLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mk 458 (623)
.+.+..+.--|.|..+|.....-...-||+++.++.-=..---..++|..+|-.+|.-++.+|+++-. +++.-+ .
T Consensus 66 ~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r-ae~lpe----v 140 (916)
T KOG0249|consen 66 EDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR-AETLPE----V 140 (916)
T ss_pred cccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhh----h
Confidence 44555666667777777777777888899998876522221111356666666666666666666666 554433 1
Q ss_pred HHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHH
Q 006984 459 YSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIK 512 (623)
Q Consensus 459 y~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lk 512 (623)
-+++.+-. ..+.+|+.+-...|..+.-|-..|-+++.||.-.+.+++
T Consensus 141 eael~qr~-------~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqree 187 (916)
T KOG0249|consen 141 EAELAQRN-------AALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREK 187 (916)
T ss_pred HHHHHHHH-------HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12221111 112233333334444444444445577777776666665
No 120
>PRK10698 phage shock protein PspA; Provisional
Probab=84.35 E-value=51 Score=33.60 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=8.5
Q ss_pred hhhhhhhhhhhhh
Q 006984 474 SKVSKAESKTESV 486 (623)
Q Consensus 474 ~Kl~rAE~RaE~a 486 (623)
.|+.+.|.+++.+
T Consensus 173 ~ki~~~Ea~aea~ 185 (222)
T PRK10698 173 RRIDQMEAEAESH 185 (222)
T ss_pred HHHHHHHHHHhHh
Confidence 5666777776664
No 121
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=84.22 E-value=25 Score=37.72 Aligned_cols=46 Identities=11% Similarity=0.152 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhc
Q 006984 253 QVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQR 303 (623)
Q Consensus 253 qe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~~s~~R 303 (623)
-.+-+--=.|...|==|= ...+.|+-..+...+..++.|..-....
T Consensus 121 lvK~~aRl~ak~~WYeWR-----~kllegLk~~L~~~~~~l~~D~~~L~~~ 166 (312)
T smart00787 121 LVKTFARLEAKKMWYEWR-----MKLLEGLKEGLDENLEGLKEDYKLLMKE 166 (312)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555666666553 3456677777777777776665544433
No 122
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=84.13 E-value=36 Score=31.72 Aligned_cols=74 Identities=19% Similarity=0.275 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 006984 500 LKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (623)
Q Consensus 500 LeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~ 573 (623)
.-+.|..++..+..+..........-+..-..+.....-.+.--..|..++..++..+--+..-|++|.+.++.
T Consensus 57 ~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 57 DIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444444444443333333333344445566667777777777777778888777754
No 123
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=83.79 E-value=86 Score=35.75 Aligned_cols=163 Identities=20% Similarity=0.202 Sum_probs=98.7
Q ss_pred HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhh
Q 006984 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS 447 (623)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~as 447 (623)
-.+...|.+|.-.|+|.+-+.|-|+..+.+.=+. |-+- +..+ -+|...|++-.-..+.| +.
T Consensus 249 kqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~r---------rhrE-il~k----~eReasle~Enlqmr~q-----ql 309 (502)
T KOG0982|consen 249 KQENLQLVHRYHMLEEQRREQELRAEESLSEEER---------RHRE-ILIK----KEREASLEKENLQMRDQ-----QL 309 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH---------HHHH-HHHH----HHHHHHHHHHHHHHHHH-----HH
Confidence 4578889999999999999999888776543221 1111 1111 13455555555554433 34
Q ss_pred hHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHh
Q 006984 448 SEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAA 527 (623)
Q Consensus 448 aEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~ 527 (623)
.+.+-+ +.+.++|.-..++.|-+...|...++|.+-.+++ ..-+.=.-+..+| -+..+++.+
T Consensus 310 eeente----lRs~~arlksl~dklaee~qr~sd~LE~lrlql~-------~eq~l~~rm~d~L-------rrfq~ekea 371 (502)
T KOG0982|consen 310 EEENTE----LRSLIARLKSLADKLAEEDQRSSDLLEALRLQLI-------CEQKLRVRMNDIL-------RRFQEEKEA 371 (502)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHH-------HHHHHhhHH
Confidence 445555 7899999999999998888888888888877777 3322222233333 334455555
Q ss_pred hHHHHHHhHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 006984 528 SAKEVNHRTKLMMEMVMQLA------------------TQRELIQKQVYSLTSENKLLVEKLQYS 574 (623)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~------------------~ErdrLe~ql~s~keenK~L~ekld~t 574 (623)
|. ++|+++...|+ ....-|+..+-.++.+|..|.+..++.
T Consensus 372 tq-------ELieelrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~nr~l~eqneel 429 (502)
T KOG0982|consen 372 TQ-------ELIEELRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQPNRILSEQNEEL 429 (502)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhccccchhhhhhhhh
Confidence 52 33333333332 223446677777888888876554443
No 124
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=83.76 E-value=98 Score=36.40 Aligned_cols=135 Identities=18% Similarity=0.177 Sum_probs=72.0
Q ss_pred HhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcC----ChhHH-HHHHHHHH
Q 006984 270 LEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST----KNSEV-LTMKEKVK 344 (623)
Q Consensus 270 ~EAENa~EvL~g~skel~gkLq~~qf~L~~s~~REsel~sKL~~~~eqL~~k~~~lekl~~s----~esEv-~sLqkKvk 344 (623)
+|-++.++-|.|.+--+..|++-+--.+.-...+.....++....+.+|..-...+...... ..+++ ..|+..+.
T Consensus 11 ~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~ 90 (617)
T PF15070_consen 11 AERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAE 90 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHH
Confidence 45566778888888777887777666666555555555555444444443322222211111 12333 35666666
Q ss_pred HHHHHHHHHHHHHHHhHhhH-------hhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhh
Q 006984 345 SLEEQLKESEIRLQNANACF-------QTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTD 404 (623)
Q Consensus 345 sLE~qLdes~eQL~~A~akl-------EesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~Lse 404 (623)
.|-+++.....+++.-.... .+.+..++.++++++.+++......+.+++..+-..-++.
T Consensus 91 ~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SR 157 (617)
T PF15070_consen 91 HLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASR 157 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHH
Confidence 66666666555554321111 2235567777777777776665555545544444443333
No 125
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=83.62 E-value=85 Score=35.59 Aligned_cols=65 Identities=22% Similarity=0.241 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 006984 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQ 572 (623)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld 572 (623)
+-+.|+..+++.|... + +...-.|++.|..-..+++-+=+..+++|-.+=.++.-..--+...|+
T Consensus 366 ~ke~E~q~lr~~l~~~------~---~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~ 430 (511)
T PF09787_consen 366 EKESEIQKLRNQLSAR------A---SSSSWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLK 430 (511)
T ss_pred HHHHHHHHHHHHHHHH------h---ccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHH
Confidence 5566666666666542 1 122245788886666655554456666555544444444444444455
No 126
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=83.52 E-value=1.2e+02 Score=37.27 Aligned_cols=64 Identities=19% Similarity=0.215 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHh
Q 006984 340 KEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT 403 (623)
Q Consensus 340 qkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~Ls 403 (623)
+++++....|++-+..|++.|....++.+-+....+++++.+|+++..=...=.....|+.+..
T Consensus 388 ~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~ 451 (980)
T KOG0980|consen 388 QEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQ 451 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3488888899999999999999998888888889999999999888776665555555554443
No 127
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=83.33 E-value=54 Score=33.06 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=14.2
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhh
Q 006984 469 IEDLKSKVSKAESKTESVEEQCI 491 (623)
Q Consensus 469 IEdLk~Kl~rAE~RaE~aEsKc~ 491 (623)
.++|..+|+.++.+++..+.++.
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~ 142 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQ 142 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666
No 128
>PLN02939 transferase, transferring glycosyl groups
Probab=82.99 E-value=1.3e+02 Score=37.32 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=36.7
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHh
Q 006984 468 LIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAA 527 (623)
Q Consensus 468 vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~ 527 (623)
.|+-|+.|+...|+|. -.++.|+.-++..|...++.++..+.+...+-.+
T Consensus 352 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (977)
T PLN02939 352 KVELLQQKLKLLEERL----------QASDHEIHSYIQLYQESIKEFQDTLSKLKEESKK 401 (977)
T ss_pred HHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 3466677777777763 3455677788889999999999888887666554
No 129
>PLN03188 kinesin-12 family protein; Provisional
Probab=82.89 E-value=1.5e+02 Score=37.85 Aligned_cols=114 Identities=19% Similarity=0.249 Sum_probs=78.2
Q ss_pred hHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh-----hhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh----
Q 006984 458 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI-----VLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS---- 528 (623)
Q Consensus 458 ky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~-----~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~t---- 528 (623)
+...=+++-.-|.|.|--.+||=-| .+|++.+ =||---.|=+.|-++++..=|+|+.+|--.-+.--+.
T Consensus 1126 ll~~hr~i~egi~dvkkaaakag~k--g~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagell 1203 (1320)
T PLN03188 1126 LLARHRRIQEGIDDVKKAAARAGVR--GAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELL 1203 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHH
Confidence 3334455556677776666665443 5666665 0111122334455555555889999886655544444
Q ss_pred --HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 006984 529 --AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (623)
Q Consensus 529 --lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~ 573 (623)
+|||+--+.++++--+..+.|-+++..||-.+|.++..=...+++
T Consensus 1204 vrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q 1250 (1320)
T PLN03188 1204 VRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQ 1250 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999665566665
No 130
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=82.73 E-value=1.1e+02 Score=36.10 Aligned_cols=142 Identities=18% Similarity=0.185 Sum_probs=84.7
Q ss_pred HHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHH
Q 006984 267 GRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSL 346 (623)
Q Consensus 267 er~~EAENa~EvL~g~skel~gkLq~~qf~L~~s~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksL 346 (623)
..+.|-.|+.-.|.+.--++-.+||+-|+--+....+=+++..+|.... ++++. ++.|+..|+..-..+
T Consensus 167 ~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~----------e~le~-K~qE~~~Lq~q~dq~ 235 (617)
T PF15070_consen 167 EQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLK----------EKLEL-KSQEAQSLQEQRDQY 235 (617)
T ss_pred HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHh-hhHHHHHHHHHHHHH
Confidence 4444555555555555555555555555433332222233333333333 34444 367788888877777
Q ss_pred HHHHHHHHHHHHHhHhhHhhhHH-------HHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcC
Q 006984 347 EEQLKESEIRLQNANACFQTSQE-------QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN 419 (623)
Q Consensus 347 E~qLdes~eQL~~A~aklEesE~-------EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesr 419 (623)
-.+|..|....+......++..- -+..|.+--.--+..+..+-.-++.+...++.++.-|.+|...+..+-..
T Consensus 236 ~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~~ 315 (617)
T PF15070_consen 236 LGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSLMALP 315 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCC
Confidence 77777776665555554444321 23455554445556677778888899999999999999999988754333
No 131
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=82.43 E-value=1.4e+02 Score=37.22 Aligned_cols=221 Identities=14% Similarity=0.163 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHH------hHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhH
Q 006984 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLN------EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNL 407 (623)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVa------aLerrIelLKEel~rAEsRa~tAesKle~LseTNd 407 (623)
.|+..|+++-++||+.++.....|..-....+..+..|- .....|+.|..+..--+ ...-..+....-++-+
T Consensus 181 ~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~--y~~~~~ey~~~k~~~~ 258 (1072)
T KOG0979|consen 181 IELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVE--YKKHDREYNAYKQAKD 258 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--hHhhhHHHHHHHHHHH
Q ss_pred HHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhh
Q 006984 408 ELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVE 487 (623)
Q Consensus 408 ELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aE 487 (623)
-+..+++.|.-....=+.+..-||++.++...+.-.+....-++.++-..+++.+.++..-++.++.+++-.-.+++.-.
T Consensus 259 r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq 338 (1072)
T KOG0979|consen 259 RAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQ 338 (1072)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006984 488 EQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL 567 (623)
Q Consensus 488 sKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L 567 (623)
..+. ..+--+-.++.-+..+.--+.-+.++.+.+.++...--.++-..++-....-......+...
T Consensus 339 ~~i~--------------~~~k~i~~~q~el~~~~~~e~~~~~~~ei~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~l~ 404 (1072)
T KOG0979|consen 339 KRIE--------------KAKKMILDAQAELQETEDPENPVEEDQEIMKEVLQKKSSKLRDSRQEIDAEQLKSQKLRDLE 404 (1072)
T ss_pred HHHH--------------HHHHHHHHHHhhhhhcCCccccchhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q ss_pred HHH
Q 006984 568 VEK 570 (623)
Q Consensus 568 ~ek 570 (623)
+-+
T Consensus 405 ~~k 407 (1072)
T KOG0979|consen 405 NKK 407 (1072)
T ss_pred HHH
No 132
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=81.59 E-value=1.3e+02 Score=36.30 Aligned_cols=26 Identities=23% Similarity=0.113 Sum_probs=10.2
Q ss_pred HHHHHHHHhccchHHHHhhhhHHHHh
Q 006984 263 EVVWGRFLEAENSAEVLMGISKEMLG 288 (623)
Q Consensus 263 ~~~~er~~EAENa~EvL~g~skel~g 288 (623)
..+-.++.+..|-.+-+...+.....
T Consensus 406 ~~~~~~~~e~~~~~~~~~~~l~~~~~ 431 (908)
T COG0419 406 EEIQEELEELEKELEELERELEELEE 431 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444433333333333333
No 133
>PRK10869 recombination and repair protein; Provisional
Probab=81.29 E-value=1.1e+02 Score=35.19 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=11.6
Q ss_pred cchhhhhHHHHHHHHH
Q 006984 423 NTKKVGILENQLRDLE 438 (623)
Q Consensus 423 deEk~~~LE~QLKEa~ 438 (623)
|.++++.+|..|-...
T Consensus 294 dp~~l~~ie~Rl~~l~ 309 (553)
T PRK10869 294 DPNRLAELEQRLSKQI 309 (553)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 6777888887776654
No 134
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=80.53 E-value=90 Score=33.77 Aligned_cols=211 Identities=20% Similarity=0.279 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCC
Q 006984 341 EKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNN 420 (623)
Q Consensus 341 kKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs 420 (623)
.++..+=.+-|+.+.++..........-++-..++..|+.++++-..-=++++.-......+..+.++.+ +-+++
T Consensus 34 ~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~-----~~~~~ 108 (294)
T COG1340 34 KEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFN-----LGGRS 108 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----ccCCC
Confidence 3333333334444444443333333334445566667777777766666666665555555555555443 22222
Q ss_pred CCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhH
Q 006984 421 DSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFEL 500 (623)
Q Consensus 421 ~~deEk~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~EL 500 (623)
+..+++-+.....-.+-.+-.-+...+ +-..|+++....++-+..+...+...+.. +++- ++
T Consensus 109 ------~~~ler~i~~Le~~~~T~~L~~e~E~~----lvq~I~~L~k~le~~~k~~e~~~~~~el~-aei~-------~l 170 (294)
T COG1340 109 ------IKSLEREIERLEKKQQTSVLTPEEERE----LVQKIKELRKELEDAKKALEENEKLKELK-AEID-------EL 170 (294)
T ss_pred ------HHHHHHHHHHHHHHHHhcCCChHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-------HH
Confidence 456666666665333333333333333 44456665555554444433333221111 1222 44
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhHHHHhh---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 006984 501 KNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (623)
Q Consensus 501 eEEL~~l~~~lksLE~sl~kA~q~k~~t---lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t 574 (623)
-.+.+-+.+++..|=...+.+...=-.+ +-++-.++..+-.-+.++...++.+|..+-....+++-+...+...
T Consensus 171 k~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l 247 (294)
T COG1340 171 KKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKAL 247 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555544444433332222 5555666777888888889999999999999888888887776633
No 135
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=80.34 E-value=83 Score=37.94 Aligned_cols=82 Identities=27% Similarity=0.302 Sum_probs=51.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHH
Q 006984 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (623)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELer 411 (623)
++.++.-+.+|+.+|-.+|.-.+.+|..+-. ++...+==+.+.+++. .+..|+++..+.++.+..+...+++++-
T Consensus 103 kda~lrq~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~~----al~~aee~~~~~eer~~kl~~~~qe~na 177 (916)
T KOG0249|consen 103 KDADLRQNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRNA----ALTKAEEHSGNIEERTRKLEEQLEELNA 177 (916)
T ss_pred cchhhchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHH----HHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777777766655 4444333344555654 3456677777777777777666666666
Q ss_pred Hhhhhhc
Q 006984 412 EINFLKG 418 (623)
Q Consensus 412 elk~Les 418 (623)
++--.+.
T Consensus 178 eL~rarq 184 (916)
T KOG0249|consen 178 ELQRARQ 184 (916)
T ss_pred HHHHHHH
Confidence 6654433
No 136
>PRK10884 SH3 domain-containing protein; Provisional
Probab=80.25 E-value=19 Score=36.57 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Q 006984 338 TMKEKVKSLEEQLKESEIRLQNAN 361 (623)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~ 361 (623)
++..++..+|.++.+...+|.++.
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555554443
No 137
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.97 E-value=89 Score=33.35 Aligned_cols=50 Identities=18% Similarity=0.402 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHH
Q 006984 336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL 385 (623)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel 385 (623)
...+++++.+|-+++.+...+..+.+...+..++++..++..|..+++.|
T Consensus 47 ~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 47 KKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444333
No 138
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.72 E-value=1.6e+02 Score=36.11 Aligned_cols=99 Identities=18% Similarity=0.291 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh-------HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhh
Q 006984 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS-------QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTN 406 (623)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEes-------E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTN 406 (623)
+.+.-+..|.++|+-+|...+.+++....++-.. ..+|..|...+++.-.+++.-..|+..-..|+..|.---
T Consensus 430 e~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ek 509 (1118)
T KOG1029|consen 430 EWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEK 509 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 4555566677777777777776666555554332 446666666666666666666666666677777777666
Q ss_pred HHHHHHhhhhhcCCCCcchhhhhHHH
Q 006984 407 LELSEEINFLKGNNDSNTKKVGILEN 432 (623)
Q Consensus 407 dELerelk~Lesrs~~deEk~~~LE~ 432 (623)
.+|+..++--.....-++-+...|+.
T Consensus 510 q~l~~qlkq~q~a~~~~~~~~s~L~a 535 (1118)
T KOG1029|consen 510 QELNHQLKQKQSAHKETTQRKSELEA 535 (1118)
T ss_pred HHHHHHHHHhhhhccCcchHHHHHHH
Confidence 66666666554443333333343333
No 139
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=78.96 E-value=70 Score=34.54 Aligned_cols=98 Identities=21% Similarity=0.288 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhh
Q 006984 350 LKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGI 429 (623)
Q Consensus 350 Ldes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~ 429 (623)
|+..+..|+..+-+.+.-..++++|.|.++.|=+ -|..+.++.+-+.-++.+-++ .++.
T Consensus 41 leSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e--------------~c~~lek~rqKlshdlq~Ke~-------qv~~ 99 (307)
T PF10481_consen 41 LESLEAALQKQKQKVEEEKNEYSALKRENQSLME--------------SCENLEKTRQKLSHDLQVKES-------QVNF 99 (307)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHH--------------HHHHHHHHHHHhhHHHhhhHH-------HHHH
Confidence 3334444444444444445577788887776643 466777777777777775555 4888
Q ss_pred HHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhh
Q 006984 430 LENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQ 489 (623)
Q Consensus 430 LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsK 489 (623)
||+||--++. .|.+++.=|.-+|+.++|+..-+-++...
T Consensus 100 lEgQl~s~Kk---------------------qie~Leqelkr~KsELErsQ~~~~~~~~s 138 (307)
T PF10481_consen 100 LEGQLNSCKK---------------------QIEKLEQELKRCKSELERSQQAASSGDVS 138 (307)
T ss_pred HHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHhhccCCcc
Confidence 8888876651 24455555666778888887766555543
No 140
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=78.42 E-value=1e+02 Score=33.29 Aligned_cols=36 Identities=11% Similarity=0.189 Sum_probs=17.3
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHh
Q 006984 245 KLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLM 280 (623)
Q Consensus 245 k~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~ 280 (623)
..|...+..-..|+++-...+..++-++|+..+-++
T Consensus 163 ~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr 198 (444)
T TIGR03017 163 ELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQ 198 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555555555555444443
No 141
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=78.37 E-value=59 Score=30.36 Aligned_cols=25 Identities=16% Similarity=0.005 Sum_probs=9.6
Q ss_pred HHhhhhhHHHHHHHHHHHhhhhHHH
Q 006984 385 LYGAESRAESAEEKVTQLTDTNLEL 409 (623)
Q Consensus 385 l~rAEsRa~tAesKle~LseTNdEL 409 (623)
...|+.+.+.-..+.....++-..+
T Consensus 40 a~~Aq~~YE~El~~Ha~~~~~L~~l 64 (132)
T PF07926_consen 40 AQEAQQKYERELVKHAEDIKELQQL 64 (132)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3334444443333333333333333
No 142
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=78.24 E-value=69 Score=34.05 Aligned_cols=138 Identities=17% Similarity=0.118 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhc
Q 006984 251 TEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLES 330 (623)
Q Consensus 251 ~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~~s~~REsel~sKL~~~~eqL~~k~~~lekl~~ 330 (623)
..+-..|+++-...+-.++-+|+....-++.....+- +.+...--....+.|+.-+.+++.+-..+...-.
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d---------~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~ 238 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFD---------PKAQSSAQLSLISTLEGELIRVQAQLAQLRSITP 238 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 3556678888888888888888888777765433221 1111111122233333333333333222322222
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHh
Q 006984 331 TKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT 403 (623)
Q Consensus 331 s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~Ls 403 (623)
...+.+..++.++..|+.+++.-..++..... ..+++.....+.|+.++.-|+...+.+..+++++.
T Consensus 239 ~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~------~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 239 EQNPQVPSLQARIKSLRKQIDEQRNQLSGGLG------DSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHhhcCCC------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23799999999999999999887766654321 12344444566777788888888888888877776
No 143
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=78.20 E-value=1.7e+02 Score=35.47 Aligned_cols=73 Identities=10% Similarity=0.221 Sum_probs=42.0
Q ss_pred ccccchhhhhhH--HHHHHHHHhhcCCccccccCCCccchHHHHHHHHHHH---hhhhhhhhHHhHHHHHHHHHhhhh
Q 006984 52 DLAYSSEKLVNL--HVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDL---LFGILDSELREVERLLDTIHVEIV 124 (623)
Q Consensus 52 ~~a~~SEKl~NL--~~l~M~~~~~~~~~E~~~~~~~~i~~~s~eka~efDl---L~gildsEv~ele~~~~~lq~~I~ 124 (623)
|+...=+.++.| .+|..-|.-+-..|-.+...+..-=..-+.+.|..|. ++-.+-.-++++..-+..++..+.
T Consensus 118 ~v~~~i~~llgld~~~f~~~v~l~QGe~~~fl~~~~~er~~il~~l~~l~~~e~~~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 118 DVNEKIEELLGLDKDTFTRSVYLPQGEFDAFLKSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred hHHHHHHHHhCCCHHHHhHHheeccHhHHHHHhcCcHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566554 6888888888888887765554432344555565555 333333444555555555555554
No 144
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=78.18 E-value=16 Score=36.03 Aligned_cols=108 Identities=23% Similarity=0.297 Sum_probs=47.0
Q ss_pred HhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhh
Q 006984 287 LGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT 366 (623)
Q Consensus 287 ~gkLq~~qf~L~~s~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEe 366 (623)
-.++-..+-+|..+-++=+++..+|.... .++..+..++......+......+.....++..
T Consensus 73 e~~~~~l~~ELael~r~~~el~~~L~~~~------------------~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~ 134 (194)
T PF08614_consen 73 EQKLAKLQEELAELYRSKGELAQQLVELN------------------DELQELEKELSEKERRLAELEAELAQLEEKIKD 134 (194)
T ss_dssp -----------------------------------------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccc------------------cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555554443 333344444455555555555555555455555
Q ss_pred hHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 006984 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (623)
Q Consensus 367 sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELere 412 (623)
...++..++..|+.|.+++.--.-....++.|+..+.+-|.+|=.-
T Consensus 135 l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 135 LEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777778888888888888888888888888888888877554
No 145
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=77.64 E-value=99 Score=32.59 Aligned_cols=12 Identities=25% Similarity=0.661 Sum_probs=4.6
Q ss_pred HHHHhhhhhhhh
Q 006984 469 IEDLKSKVSKAE 480 (623)
Q Consensus 469 IEdLk~Kl~rAE 480 (623)
+.+++.++..++
T Consensus 255 l~~~~~~l~~~~ 266 (423)
T TIGR01843 255 LAELRERLNKAR 266 (423)
T ss_pred HHHHHHHHHHHH
Confidence 333334444433
No 146
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=77.61 E-value=84 Score=31.77 Aligned_cols=113 Identities=23% Similarity=0.364 Sum_probs=76.4
Q ss_pred HhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHH
Q 006984 318 LKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEE 397 (623)
Q Consensus 318 L~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAes 397 (623)
|.+|...++.|+ .|+.....-|...-..|-.++.....|.........++..|...+...+..+..++..+..+..
T Consensus 62 L~GKq~iveqLe----~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~ 137 (188)
T PF05335_consen 62 LAGKQQIVEQLE----QEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQ 137 (188)
T ss_pred HHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555443 3455555555555555666655566665555556789999999999999999999988887776
Q ss_pred HHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhh
Q 006984 398 KVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSS 448 (623)
Q Consensus 398 Kle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asa 448 (623)
.+.+ ....|+. -..|++.|.+||.+++.-++..+..+
T Consensus 138 el~e----------K~qLLea----Ak~Rve~L~~QL~~Ar~D~~~tk~aA 174 (188)
T PF05335_consen 138 ELAE----------KTQLLEA----AKRRVEELQRQLQAARADYEKTKKAA 174 (188)
T ss_pred HHHH----------HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544 3333333 13589999999999998888777444
No 147
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=76.85 E-value=57 Score=32.85 Aligned_cols=110 Identities=20% Similarity=0.241 Sum_probs=73.3
Q ss_pred HHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHh
Q 006984 286 MLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQ 365 (623)
Q Consensus 286 l~gkLq~~qf~L~~s~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklE 365 (623)
+..-|+--=||......|=..|-+--.+...-++.++..=+++..- ..+...+..++..||..+-+.+.+.+.....-+
T Consensus 77 tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~-~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke 155 (190)
T PF05266_consen 77 TLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEK-EAELKELESEIKELEMKILELQRQAAKLKEKKE 155 (190)
T ss_pred HHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555556665555554444444433333333332222233222 345566777888888888888888888888888
Q ss_pred hhHHHHHhHHHHHHHHHhHHHhhhhhHHHHH
Q 006984 366 TSQEQLNEMDNFIESLKESLYGAESRAESAE 396 (623)
Q Consensus 366 esE~EVaaLerrIelLKEel~rAEsRa~tAe 396 (623)
+...+|+.|...+..+++++..++-+-++..
T Consensus 156 ~~~~ei~~lks~~~~l~~~~~~~e~~F~~~~ 186 (190)
T PF05266_consen 156 AKDKEISRLKSEAEALKEEIENAELEFQSVA 186 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999998887754
No 148
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=76.58 E-value=1.5e+02 Score=33.97 Aligned_cols=16 Identities=13% Similarity=0.476 Sum_probs=11.6
Q ss_pred cchhhhhHHHHHHHHH
Q 006984 423 NTKKVGILENQLRDLE 438 (623)
Q Consensus 423 deEk~~~LE~QLKEa~ 438 (623)
|.++++.++.+|-..+
T Consensus 299 dp~~L~ele~RL~~l~ 314 (563)
T TIGR00634 299 DPERLNEIEERLAQIK 314 (563)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 6777888888776554
No 149
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=76.33 E-value=71 Score=34.38 Aligned_cols=58 Identities=21% Similarity=0.238 Sum_probs=34.4
Q ss_pred HHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 006984 357 LQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (623)
Q Consensus 357 L~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk 414 (623)
|..+++++.....++..+.+.+..++.++..-..+++....+..++...-.++++.+.
T Consensus 206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~ 263 (312)
T smart00787 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE 263 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455666666666666666666666666666666666655555555444
No 150
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=76.25 E-value=1.5e+02 Score=34.05 Aligned_cols=188 Identities=17% Similarity=0.229 Sum_probs=109.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHH
Q 006984 247 KLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQ 326 (623)
Q Consensus 247 kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~~s~~REsel~sKL~~~~eqL~~k~~~le 326 (623)
++..+++-.+-.|+.+ -+-||+.|-+...-+.-....+-+.++.+...|+.....|..-+.......+....-...+-
T Consensus 76 ~~~~ie~~L~~ae~~~--~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll 153 (560)
T PF06160_consen 76 QLPEIEEQLFEAEEYA--DKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELL 153 (560)
T ss_pred hhHHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555553 35688888888888888888888888888888888888777777777666666665333332
Q ss_pred HhhcCChhHHHHHHHHHHHHHHHHHHHHHHHH-----HhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHH
Q 006984 327 KLESTKNSEVLTMKEKVKSLEEQLKESEIRLQ-----NANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQ 401 (623)
Q Consensus 327 kl~~s~esEv~sLqkKvksLE~qLdes~eQL~-----~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~ 401 (623)
.-..+=-+=+..|.+++..+|.+|.++..-.. .|..-+.....++..++..++.+-.=+.......-.- +.+
T Consensus 154 ~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~q---l~e 230 (560)
T PF06160_consen 154 AHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQ---LEE 230 (560)
T ss_pred HhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH---HHH
Confidence 22222134456788888888888888877432 2444444445566666666666655555554443332 222
Q ss_pred HhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHH
Q 006984 402 LTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQL 441 (623)
Q Consensus 402 LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QL 441 (623)
+...=.++.++==.|..-. -.+.+..++.++..+...|
T Consensus 231 L~~gy~~m~~~gy~l~~~~--i~~~i~~i~~~l~~~~~~L 268 (560)
T PF06160_consen 231 LKEGYREMEEEGYYLEHLD--IEEEIEQIEEQLEEALALL 268 (560)
T ss_pred HHHHHHHHHHCCCCCCCCC--HHHHHHHHHHHHHHHHHHH
Confidence 3333333333211122111 1455566666666555444
No 151
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=76.19 E-value=1.7e+02 Score=34.45 Aligned_cols=54 Identities=26% Similarity=0.393 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHH
Q 006984 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLY 386 (623)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~ 386 (623)
..|+..|++.+..+..++......+..-..++....+++..+...++.++..+.
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667777777777777766666666655555555555555555555554443
No 152
>PRK10884 SH3 domain-containing protein; Provisional
Probab=76.19 E-value=29 Score=35.32 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=22.5
Q ss_pred hHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhh
Q 006984 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTD 404 (623)
Q Consensus 367 sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~Lse 404 (623)
+...+..|++.++.|++++..+..+...++.++..+..
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666665555554443
No 153
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=76.18 E-value=77 Score=30.58 Aligned_cols=10 Identities=30% Similarity=0.537 Sum_probs=3.6
Q ss_pred hHHHHHHHHH
Q 006984 373 EMDNFIESLK 382 (623)
Q Consensus 373 aLerrIelLK 382 (623)
.|...+.++.
T Consensus 141 ~~~~e~~~l~ 150 (191)
T PF04156_consen 141 ELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 154
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=76.17 E-value=1.8e+02 Score=34.97 Aligned_cols=194 Identities=22% Similarity=0.289 Sum_probs=102.4
Q ss_pred cchHHHHHHHHHHHHhhhhhhhHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchH--------HHH
Q 006984 208 KNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSA--------EVL 279 (623)
Q Consensus 208 qt~eqqR~iLrMLekSla~eldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~--------EvL 279 (623)
+|.+-||--++=|. ...| .|=-+|.+--+-.++|.-+-+++-+ .+. ...+.|.|..|.-+.- .++
T Consensus 113 k~IEaqrKaIqELQ--f~NE-~lSlKLee~i~en~dL~k~nnaTR~-lCN---lLKeT~~rsaEK~~~yE~EREET~qly 185 (786)
T PF05483_consen 113 KIIEAQRKAIQELQ--FENE-KLSLKLEEEIQENKDLRKENNATRH-LCN---LLKETCQRSAEKMKKYEYEREETRQLY 185 (786)
T ss_pred HHHHHHHHHHHHHH--Hhhh-HHhHHHHHHHhhHHHHHHhhhHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666555544 3333 0112344444445666666655554 222 2445555555444333 333
Q ss_pred hhhh---HHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 006984 280 MGIS---KEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIR 356 (623)
Q Consensus 280 ~g~s---kel~gkLq~~qf~L~~s~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQ 356 (623)
++.+ .-|+..+++..+.--++. -|+..||+...++...-+...++=-..++.+|.-|+-+...=|+.+.+....
T Consensus 186 ~~l~~niekMi~aFEeLR~qAEn~r---~EM~fKlKE~~~k~~~leeey~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~ 262 (786)
T PF05483_consen 186 MDLNENIEKMIAAFEELRVQAENDR---QEMHFKLKEDYEKFEDLEEEYKKEVNDKEKQVSLLQTQLKEKENKIKDLLLL 262 (786)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 3333 345556666555433333 2566788888888877655555444446777777777777777777666666
Q ss_pred HHHhHhhH---hhh-----------HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHH
Q 006984 357 LQNANACF---QTS-----------QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (623)
Q Consensus 357 L~~A~akl---Ees-----------E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELer 411 (623)
|+...... ++. ..+.-++...+.+.|-.+-++++--..-+..+..++++-.++.+
T Consensus 263 l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~ 331 (786)
T PF05483_consen 263 LQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALEEDLQQATKTLIQLTE 331 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55443332 211 22444555566666666666555444444444444444444443
No 155
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=75.80 E-value=57 Score=30.71 Aligned_cols=68 Identities=24% Similarity=0.310 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHH
Q 006984 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVT 400 (623)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle 400 (623)
.++...|...+..|+.++..++-.+..+....-....++.++...+...++++.+....+++..++|.
T Consensus 65 ~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~ 132 (151)
T PF11559_consen 65 RSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYE 132 (151)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677777777777666666666665555667777777777777777777777766666554
No 156
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=75.36 E-value=82 Score=34.32 Aligned_cols=20 Identities=5% Similarity=0.112 Sum_probs=12.9
Q ss_pred HHHHHHhhhhcccceecccc
Q 006984 115 LLDTIHVEIVNVHHKISSCK 134 (623)
Q Consensus 115 ~~~~lq~~I~~~~~~~~s~~ 134 (623)
-++.++..+..|+.++.++.
T Consensus 33 ~I~~~~l~~~~A~~kF~~~~ 52 (388)
T PF04912_consen 33 DIERSRLNPDEARSKFKGAR 52 (388)
T ss_pred chhhcCCCHHHHHHHhCcCc
Confidence 36666667777777665554
No 157
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=75.18 E-value=1.1e+02 Score=31.86 Aligned_cols=110 Identities=21% Similarity=0.274 Sum_probs=50.0
Q ss_pred HHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHH
Q 006984 375 DNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQ 454 (623)
Q Consensus 375 errIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaEas~eq 454 (623)
+|.-..|++.+...++-+..|...+.....++..|..+++..+.- ...|+..-.++..-.+.-...+......
T Consensus 4 Er~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeee-------a~~Le~k~~eaee~~~rL~~~~~~~~eE 76 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEE-------AEELEQKRQEAEEEKQRLEEEAEMQEEE 76 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH--------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555666666665555442 2334444333332222222333333333
Q ss_pred HhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 006984 455 QSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (623)
Q Consensus 455 Q~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~ 491 (623)
+..+-..+......|..|.....+.+..+.....+..
T Consensus 77 k~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~ 113 (246)
T PF00769_consen 77 KEQLEQELREAEAEIARLEEESERKEEEAEELQEELE 113 (246)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335556667777777666666666655444444433
No 158
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=74.59 E-value=33 Score=30.56 Aligned_cols=67 Identities=18% Similarity=0.291 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhh
Q 006984 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINF 415 (623)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~ 415 (623)
.|..++..||.-++.--..... ...++..|+.|..+-.+=..++..++..|..+..+|.|..+.++.
T Consensus 12 rL~~aid~LE~~v~~r~~~~~~-----------~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~ 78 (89)
T PF13747_consen 12 RLEAAIDRLEKAVDRRLERDRK-----------RDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDS 78 (89)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh-----------hhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555443333222 256666677777777777777777778888888888888887763
No 159
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=74.52 E-value=1e+02 Score=31.15 Aligned_cols=73 Identities=27% Similarity=0.343 Sum_probs=43.7
Q ss_pred hHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcC----ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 006984 291 QIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST----KNSEVLTMKEKVKSLEEQLKESEIRLQNANAC 363 (623)
Q Consensus 291 q~~qf~L~~s~~REsel~sKL~~~~eqL~~k~~~lekl~~s----~esEv~sLqkKvksLE~qLdes~eQL~~A~ak 363 (623)
......|+-+--++.++.-+++....+|-.-...+.+|+.- .=.|-..|+.++..++..+.+.+..+....-+
T Consensus 71 r~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~ 147 (194)
T PF15619_consen 71 RVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQ 147 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666677777777777777776655555555543 12445566666666666666555555544433
No 160
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=74.15 E-value=1.4e+02 Score=32.45 Aligned_cols=46 Identities=4% Similarity=0.015 Sum_probs=22.0
Q ss_pred HHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHH
Q 006984 505 SFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRE 551 (623)
Q Consensus 505 ~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~Erd 551 (623)
+.++..+..++..+.........| ..+....++++.+-..|-..++
T Consensus 321 ~~l~~~l~~~~~~~~~l~~~~~~~-~~L~r~~~~~~~~y~~ll~r~~ 366 (444)
T TIGR03017 321 AELREALENQKAKVLELNRQRDEM-SVLQRDVENAQRAYDAAMQRYT 366 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445544444 3344445555555555544443
No 161
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=73.63 E-value=52 Score=31.71 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=7.5
Q ss_pred HHHHHHHHHhhhhHHHHHHhh
Q 006984 394 SAEEKVTQLTDTNLELSEEIN 414 (623)
Q Consensus 394 tAesKle~LseTNdELerelk 414 (623)
...+++..+......+.++..
T Consensus 127 ~~~~~l~~l~~~~~~~~~e~~ 147 (191)
T PF04156_consen 127 SVEERLDSLDESIKELEKEIR 147 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 162
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=73.23 E-value=83 Score=29.70 Aligned_cols=98 Identities=17% Similarity=0.301 Sum_probs=61.0
Q ss_pred hHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHH
Q 006984 458 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTK 537 (623)
Q Consensus 458 ky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak 537 (623)
+-+.|++++.=+--|+..+.+.+..-+.+...++-|+..|-++ ......+..|+..+.....+-+.++.=+|-+.+
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~----~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E 96 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL----RALKKEVEELEQELEELQQRYQTLLELLGEKSE 96 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 5567788887777777888888777777777777666555433 344444555555555555555555555555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006984 538 LMMEMVMQLATQRELIQKQVYSLTSENKLLVEK 570 (623)
Q Consensus 538 ~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ek 570 (623)
+++-|+..|.-+|.=|+...+.
T Consensus 97 -----------~veEL~~Dv~DlK~myr~Qi~~ 118 (120)
T PF12325_consen 97 -----------EVEELRADVQDLKEMYREQIDQ 118 (120)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666665544
No 163
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=73.01 E-value=1.3e+02 Score=31.72 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=15.8
Q ss_pred HHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHH
Q 006984 407 LELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQ 443 (623)
Q Consensus 407 dELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqh 443 (623)
.+++|-.+.++.. ......++..+.++..++.+++.
T Consensus 135 ~~~~R~~~L~~~g-~vS~~~~~~a~~~~~~a~~~l~~ 170 (346)
T PRK10476 135 RTLERLEPLLAKG-YVSAQQVDQARTAQRDAEVSLNQ 170 (346)
T ss_pred HHHHHHHHHHHCC-CcCHHHHHHHHHHHHHHHHHHHH
Confidence 4455555544433 33334444444444444443333
No 164
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=71.92 E-value=31 Score=39.22 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=13.7
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 006984 499 ELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (623)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~k~~t 528 (623)
.|..+++.++..-+..|..+.+.+.+-.+-
T Consensus 365 ~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~ 394 (493)
T KOG0804|consen 365 SLKQESSDLEAEKKIVERKLQQLQTKLKKC 394 (493)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555554444444444444433333
No 165
>PF15294 Leu_zip: Leucine zipper
Probab=71.72 E-value=36 Score=36.43 Aligned_cols=94 Identities=16% Similarity=0.223 Sum_probs=68.6
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHh----------------hHHHHHHHHHHHhHHHHhh
Q 006984 465 METLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRD----------------KIKILESSLNRANIEKAAS 528 (623)
Q Consensus 465 me~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~----------------~lksLE~sl~kA~q~k~~t 528 (623)
+-..|..|+.+..++..|.-++|..|+..-+.+.+|+..|+.++. .+..||.+...+...=..+
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence 346788899999999999999999999999999999999988876 1334566665555444455
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 006984 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVY 558 (623)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLe~ql~ 558 (623)
+.+-+...+..+..|.---+++-+.+.++.
T Consensus 210 ~~d~~~~~k~L~e~L~~~KhelL~~QeqL~ 239 (278)
T PF15294_consen 210 LQDKESQQKALEETLQSCKHELLRVQEQLS 239 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 666666666666666666666666666643
No 166
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=71.28 E-value=1.9e+02 Score=32.86 Aligned_cols=70 Identities=19% Similarity=0.309 Sum_probs=39.9
Q ss_pred HHHhhhhHHHHHhhcC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHH
Q 006984 316 EQLKAKDMVLQKLEST---KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL 385 (623)
Q Consensus 316 eqL~~k~~~lekl~~s---~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel 385 (623)
.+|.+-...++.+..+ ...+...|++-++++|.++.....++..+...+......|++++..++-|+..-
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4555545555544443 345555666666666666666666666666665555666666666666555444
No 167
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=69.82 E-value=2.1e+02 Score=32.72 Aligned_cols=166 Identities=23% Similarity=0.330 Sum_probs=93.7
Q ss_pred HHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhh
Q 006984 401 QLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAE 480 (623)
Q Consensus 401 ~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE 480 (623)
.++--...|+...+-|++..-.+-+| |=+-+.+.+--++.-+.+-.+-++++..+-++|.-+.++..|++.=+-++.
T Consensus 220 al~llv~tLee~~~~LktqIV~sPeK---L~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~ 296 (446)
T KOG4438|consen 220 ALKLLVVTLEENANCLKTQIVQSPEK---LKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELKALLKKIS 296 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence 33344455666666666664434344 333344444444544444445556666677888889999998888777777
Q ss_pred hhh---hhhhhhhhhhccchhhHHHHHHHHHhhH---HHHHHHHHHH---hHHHHhh-----------------------
Q 006984 481 SKT---ESVEEQCIVLSEDNFELKNKQSFMRDKI---KILESSLNRA---NIEKAAS----------------------- 528 (623)
Q Consensus 481 ~Ra---E~aEsKc~~Lse~N~ELeEEL~~l~~~l---ksLE~sl~kA---~q~k~~t----------------------- 528 (623)
+-. ++.|.+.++| ..|++|+.........+ +-+|....+. ...+.+.
T Consensus 297 ~~~~e~d~~Et~~v~l-ke~~~Le~q~e~~~~e~~~lk~~e~~~kqL~~~~kek~~~~Qd~~~r~~E~v~~~md~~~~~~ 375 (446)
T KOG4438|consen 297 SDGVEYDSLETKVVEL-KEILELEDQIELNQLELEKLKMFENLTKQLNELKKEKESRRQDLENRKTESVKAMMDDNIEKY 375 (446)
T ss_pred HhhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 766 6777776644 56788877655433322 2222322222 2222222
Q ss_pred ----------HHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006984 529 ----------AKEVNHRTKLMMEMVM--QLATQRELIQKQVYSLTSENKLLVEK 570 (623)
Q Consensus 529 ----------lKeae~Rak~aE~lV~--KL~~ErdrLe~ql~s~keenK~L~ek 570 (623)
.+.++.....+...=. +++..|..++.|+.+...++-.+...
T Consensus 376 n~V~~kr~a~~~kie~~~~~ik~~e~~l~~~~~r~e~~~~i~aI~l~~~llk~H 429 (446)
T KOG4438|consen 376 NVVRQKRNAKVKKIEEKNEEIKKIELFLEIARGREELESQIVAITLECILLKMH 429 (446)
T ss_pred cccchhhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222222 66788888888888888888776554
No 168
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=68.40 E-value=49 Score=32.65 Aligned_cols=108 Identities=19% Similarity=0.299 Sum_probs=26.2
Q ss_pred HHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhH---HH
Q 006984 462 IWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRT---KL 538 (623)
Q Consensus 462 i~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Ra---k~ 538 (623)
+..+...+-.|+.++.-+-..-.....+++-++..+-+|..++.....++..|+........+-...-.++..+. ..
T Consensus 69 ~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~ 148 (194)
T PF08614_consen 69 ISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEI 148 (194)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443334444566555555566666666666665555544443333222222222222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006984 539 MMEMVMQLATQRELIQKQVYSLTSENKLLVE 569 (623)
Q Consensus 539 aE~lV~KL~~ErdrLe~ql~s~keenK~L~e 569 (623)
+.|=..-|+.+..-+++++..+..+|+.|++
T Consensus 149 l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 149 LQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333444444444445555555555443
No 169
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=68.38 E-value=2.2e+02 Score=33.59 Aligned_cols=140 Identities=11% Similarity=0.136 Sum_probs=80.0
Q ss_pred hhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHH------HHhhhhHHhhhcccchhchhHHHHHH
Q 006984 238 NQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKE------MLGRFQIVQFNLNGSLQRESELKSKL 311 (623)
Q Consensus 238 ~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~ske------l~gkLq~~qf~L~~s~~REsel~sKL 311 (623)
..+...+..|...+.+-..|+++-...+..++-.+|++.+-++-..+. ....++.+ .++..+
T Consensus 252 ~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~-----------~~l~~q- 319 (726)
T PRK09841 252 NYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQI-----------VNVDNQ- 319 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-----------HHHHHH-
Confidence 345666777777777777777777777777777777777777653221 11111111 112222
Q ss_pred HhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhh
Q 006984 312 GDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESR 391 (623)
Q Consensus 312 ~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsR 391 (623)
+.++..+...+...-....+.+..|+.++.+|+.++.....++. .+...++....|+.++.-++.-
T Consensus 320 ---l~~l~~~~~~l~~~~~~~hP~v~~l~~~~~~L~~~~~~l~~~~~-----------~~p~~e~~~~~L~R~~~~~~~l 385 (726)
T PRK09841 320 ---LNELTFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVS-----------AMPSTQQEVLRLSRDVEAGRAV 385 (726)
T ss_pred ---HHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHH-----------hccHHHHHHHHHHHHHHHHHHH
Confidence 22222233333332233578899998888888777666554443 2334455555666666666666
Q ss_pred HHHHHHHHHHHh
Q 006984 392 AESAEEKVTQLT 403 (623)
Q Consensus 392 a~tAesKle~Ls 403 (623)
......|..++.
T Consensus 386 Y~~lL~r~~e~~ 397 (726)
T PRK09841 386 YLQLLNRQQELS 397 (726)
T ss_pred HHHHHHHHHHHH
Confidence 666666666543
No 170
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.31 E-value=3e+02 Score=33.97 Aligned_cols=53 Identities=17% Similarity=0.332 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh-------HHHHHhHHHHHHHHHhHHHh
Q 006984 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTS-------QEQLNEMDNFIESLKESLYG 387 (623)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEes-------E~EVaaLerrIelLKEel~r 387 (623)
|+.+|+.|+++|...|-++...+..++..++.. -+++..+..+|+++-+++-+
T Consensus 445 eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~ 504 (1118)
T KOG1029|consen 445 ELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQK 504 (1118)
T ss_pred HHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344666666666666666666655555555442 44566666666666665544
No 171
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=66.62 E-value=1e+02 Score=33.18 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=21.4
Q ss_pred HHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 006984 375 DNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (623)
Q Consensus 375 errIelLKEel~rAEsRa~tAesKle~LseTNdELere 412 (623)
-+.+.-|+++++..-.--++-..-+-+|.++||-|++.
T Consensus 90 y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLEra 127 (333)
T KOG1853|consen 90 YQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERA 127 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHh
Confidence 34455555555554444444455556667777777664
No 172
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=66.32 E-value=1.5e+02 Score=29.87 Aligned_cols=53 Identities=28% Similarity=0.329 Sum_probs=29.4
Q ss_pred HHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006984 306 ELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQ 358 (623)
Q Consensus 306 el~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~ 358 (623)
++...|+.-+.++..+....+++-..-..|...|.+-++.++.+..+...+|.
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~ 79 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLK 79 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45556666666666665555554444344555555555555555555555443
No 173
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=66.27 E-value=3.8e+02 Score=34.40 Aligned_cols=30 Identities=7% Similarity=-0.110 Sum_probs=17.8
Q ss_pred HHhhhhhhhhHHhHHHHHHHHHhhhhcccc
Q 006984 99 DLLFGILDSELREVERLLDTIHVEIVNVHH 128 (623)
Q Consensus 99 DlL~gildsEv~ele~~~~~lq~~I~~~~~ 128 (623)
|.-..=|+..+..++..+..+...+..+..
T Consensus 424 ~~~r~~l~~~~~~~~~~i~~L~~~~~~~e~ 453 (1353)
T TIGR02680 424 DARRQDADRVIAQRSEQVALLRRRDDVADR 453 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666666655554443
No 174
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.24 E-value=1.9e+02 Score=30.96 Aligned_cols=61 Identities=23% Similarity=0.235 Sum_probs=33.6
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006984 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKL 571 (623)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekl 571 (623)
.|+.++..+-.....+|..+. ++.....--.+++.+|+......+.+...+. +-+.++...
T Consensus 166 ~l~~~~e~l~al~~e~e~~~~-----------~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~-~qka~a~a~ 226 (265)
T COG3883 166 ALEDKLETLVALQNELETQLN-----------SLNSQKAEKNALIAALAAKEASALGEKAALE-EQKALAEAA 226 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHH
Confidence 455555555555555555443 3334444445666666666666666666665 444444433
No 175
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=66.06 E-value=2.2e+02 Score=31.57 Aligned_cols=82 Identities=17% Similarity=0.169 Sum_probs=54.7
Q ss_pred HHHHHhhHHHHHHHHHHHhHHHHhh--------HHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 006984 504 QSFMRDKIKILESSLNRANIEKAAS--------AKEVNHR-TKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (623)
Q Consensus 504 L~~l~~~lksLE~sl~kA~q~k~~t--------lKeae~R-ak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t 574 (623)
+..+.+.+..++..+.++....... ..++..| ..+..+-......+++.++.++.............++.+
T Consensus 238 ~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~ 317 (457)
T TIGR01000 238 LATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQKG 317 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344444455555554444433331 2233333 444555666778888999999999999999999999999
Q ss_pred CCCCceeeecc
Q 006984 575 GKSSSATMYNA 585 (623)
Q Consensus 575 ~~~~~~~~~~~ 585 (623)
..-+|++=++.
T Consensus 318 ~I~AP~dG~V~ 328 (457)
T TIGR01000 318 VIKAPEDGVLH 328 (457)
T ss_pred EEECCCCeEEE
Confidence 99999877665
No 176
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=65.92 E-value=35 Score=30.53 Aligned_cols=58 Identities=21% Similarity=0.280 Sum_probs=51.4
Q ss_pred hHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHH
Q 006984 229 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEM 286 (623)
Q Consensus 229 dLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel 286 (623)
.+++...+.+...-.+...++..++.+..|+-.-...-.++|++....+.|....+-+
T Consensus 7 ~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L 64 (96)
T PF08647_consen 7 SMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKL 64 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4677788888888889999999999999999999999999999999999998876654
No 177
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=65.79 E-value=3.3e+02 Score=33.61 Aligned_cols=146 Identities=20% Similarity=0.290 Sum_probs=90.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHH--------HHhHHHhhhhhHHHHHHH---HH
Q 006984 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIES--------LKESLYGAESRAESAEEK---VT 400 (623)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIel--------LKEel~rAEsRa~tAesK---le 400 (623)
++.++..++.+-..+|..|...+.+-++-...++.+.+.++.|++.|-. |...+..-.++++.|..- +.
T Consensus 834 PE~~~~~~~~~Rnei~R~l~~~~~~~QQ~R~Q~d~aKe~~~~LnkLiPql~ll~dE~L~dRveE~~E~L~~a~e~~~fI~ 913 (1480)
T COG3096 834 PEAEIRQLNSRRNELERALSNHENDNQQQRIQFDQAKEGVTALNRLIPQLNLLADESLADRVEEIRERLDEAQEAARFIQ 913 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999888877777777777776666666665532 233333333333333221 12
Q ss_pred HHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhh----hhhHhHHHHHhhhHHHHHhHHHHH----HHH
Q 006984 401 QLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAK----VSSEASQEQQSMLYSAIWDMETLI----EDL 472 (623)
Q Consensus 401 ~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~----asaEas~eqQ~mky~ei~dme~vI----EdL 472 (623)
.---|-.+|+--.++|.+ |-+--+.|+.+...+..+..+++ +.++--+++----|+.-.+|++-- |.|
T Consensus 914 qhG~tls~LEpia~~Lqs----DPe~~e~L~~~y~qA~~~q~q~~qq~FAL~dv~qRr~HF~Y~ds~~~l~e~sdLnekL 989 (1480)
T COG3096 914 QHGNTLSKLEPIASVLQS----DPEQFEQLKEDYAQAQQMQRQARQQAFALTEVVQRRAHFSYSDSAEMLSENSDLNEKL 989 (1480)
T ss_pred HhcchHHhhhhHHHHHhC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhcccchhhHHH
Confidence 222345566777777876 55778888888777766555555 555555565555688888877543 444
Q ss_pred hhhhhhhhh
Q 006984 473 KSKVSKAES 481 (623)
Q Consensus 473 k~Kl~rAE~ 481 (623)
+.++..++.
T Consensus 990 r~rL~q~ea 998 (1480)
T COG3096 990 RQRLEQAEA 998 (1480)
T ss_pred HHHHHHHHH
Confidence 444444443
No 178
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=65.09 E-value=2.5e+02 Score=31.93 Aligned_cols=11 Identities=18% Similarity=0.534 Sum_probs=4.9
Q ss_pred hhhhHHHHHHH
Q 006984 426 KVGILENQLRD 436 (623)
Q Consensus 426 k~~~LE~QLKE 436 (623)
.++.|...++.
T Consensus 162 ~i~~l~~~~~~ 172 (420)
T COG4942 162 RIDALKATLKQ 172 (420)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 179
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=64.94 E-value=1.4e+02 Score=31.08 Aligned_cols=62 Identities=18% Similarity=0.254 Sum_probs=46.8
Q ss_pred HHHHHHhHHHHhh---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCC
Q 006984 516 SSLNRANIEKAAS---AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKS 577 (623)
Q Consensus 516 ~sl~kA~q~k~~t---lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~~~ 577 (623)
.-.+...+++++. +.+|..=...++..+.++..++++..+.+..+.++|.-|-+..+...+.
T Consensus 39 kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 39 KEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555 6666777788999999999999999999988888998888777766544
No 180
>PF15294 Leu_zip: Leucine zipper
Probab=64.67 E-value=1.1e+02 Score=33.01 Aligned_cols=75 Identities=21% Similarity=0.289 Sum_probs=60.5
Q ss_pred HHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhc-------CC--CCcchhhhhHHHHHHHHHHH
Q 006984 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKG-------NN--DSNTKKVGILENQLRDLEIQ 440 (623)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Les-------rs--~~deEk~~~LE~QLKEa~~Q 440 (623)
-.+-++..|..|.++-.+..+|+.+.+..|...-+-...++..++.|+. +. ......+.-||.++.-++.+
T Consensus 126 ~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e 205 (278)
T PF15294_consen 126 GSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSE 205 (278)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHH
Confidence 4456888999999999999999999999999999999999999998887 21 22345567788888888777
Q ss_pred HHHh
Q 006984 441 LQQA 444 (623)
Q Consensus 441 LqhA 444 (623)
++.+
T Consensus 206 ~ek~ 209 (278)
T PF15294_consen 206 LEKA 209 (278)
T ss_pred HHHH
Confidence 7666
No 181
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=63.81 E-value=36 Score=28.85 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhh
Q 006984 345 SLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAES 390 (623)
Q Consensus 345 sLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEs 390 (623)
.+..+|..+......+..++.+++....+|...|..|+.+++...+
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555666666666666666666666777777777777777665544
No 182
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=63.53 E-value=1.6e+02 Score=29.79 Aligned_cols=80 Identities=20% Similarity=0.353 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHh
Q 006984 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEI 413 (623)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerel 413 (623)
.++.++...-..+-+..+..+.++....+.....+++++.+++.|-.|++.....-..-+.....+..+...+..++.++
T Consensus 96 ~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~ 175 (190)
T PF05266_consen 96 NKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEI 175 (190)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555555555544444557777777777777777654444444444444444433333333333
No 183
>smart00338 BRLZ basic region leucin zipper.
Probab=63.37 E-value=43 Score=27.42 Aligned_cols=49 Identities=18% Similarity=0.237 Sum_probs=41.2
Q ss_pred HHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006984 516 SSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSEN 564 (623)
Q Consensus 516 ~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keen 564 (623)
.+..+.-+++..|+.+++.+....+.-...|..+++.|..++..++..+
T Consensus 15 ~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 15 EAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677889999999999999999999999888888888888887765
No 184
>PRK11519 tyrosine kinase; Provisional
Probab=63.33 E-value=1.7e+02 Score=34.43 Aligned_cols=61 Identities=18% Similarity=0.168 Sum_probs=40.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHh
Q 006984 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT 403 (623)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~Ls 403 (623)
..+.+.+|..+...|+.++...+.++.. +...++.+..|+.++.-++.-......|.+++.
T Consensus 337 ~hP~v~~l~~~~~~L~~~~~~l~~~~~~-----------lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 337 EHPAYRTLLEKRKALEDEKAKLNGRVTA-----------MPKTQQEIVRLTRDVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888877777777666665544332 334456666777777777777777777777654
No 185
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=63.30 E-value=1.1e+02 Score=29.38 Aligned_cols=84 Identities=15% Similarity=0.317 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 006984 337 LTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 416 (623)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~L 416 (623)
++|.+-+.++=+||+...+.|..|+.. |..||+-|-.++++..+-......+...+......+...++.+
T Consensus 39 r~m~~A~~~v~kql~~vs~~l~~tKkh----------LsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v 108 (126)
T PF07889_consen 39 RSMSDAVASVSKQLEQVSESLSSTKKH----------LSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSV 108 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 367777888888888888888888765 4467777777777777777777777777777777777777766
Q ss_pred hcCCCCcchhhhhHHHHHHHH
Q 006984 417 KGNNDSNTKKVGILENQLRDL 437 (623)
Q Consensus 417 esrs~~deEk~~~LE~QLKEa 437 (623)
... +..||..+.+.
T Consensus 109 ~~~-------V~~Le~ki~~i 122 (126)
T PF07889_consen 109 QQM-------VEGLEGKIDEI 122 (126)
T ss_pred HHH-------HHHHHHHHHHH
Confidence 653 66666666544
No 186
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=63.08 E-value=2.2e+02 Score=30.59 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHh
Q 006984 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYG 387 (623)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~r 387 (623)
.|+-.+.++++..|+.+++...++....+.+-..+.+-+.|..+|..++.+|.+
T Consensus 207 ~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~k 260 (269)
T PF05278_consen 207 EELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEK 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555555555544444444444444444444444444443
No 187
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=62.75 E-value=2.2e+02 Score=30.45 Aligned_cols=30 Identities=17% Similarity=0.030 Sum_probs=20.4
Q ss_pred hhhhHhhHHHHHHHHHHHHHhhHhhhhhhh
Q 006984 150 LHDCEGSLKESQEHVSELKMQSAKFQRVLS 179 (623)
Q Consensus 150 L~~~~~sLkq~~e~~~ei~~qsa~f~r~~~ 179 (623)
|.-++-+-+.+...|++-|.-...|+..+.
T Consensus 70 Lely~~~c~EL~~~I~egr~~~~~~E~~~~ 99 (325)
T PF08317_consen 70 LELYQFSCRELKKYISEGRQIFEEIEEETY 99 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666667777777777777777776663
No 188
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=62.60 E-value=1.1e+02 Score=27.83 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=31.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006984 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL 567 (623)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L 567 (623)
..++..|.++++..+..|.+..+.|+.++.......+.+
T Consensus 69 ~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 69 IQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888999998888888888888888887776665443
No 189
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=62.40 E-value=1.1e+02 Score=29.87 Aligned_cols=65 Identities=18% Similarity=0.248 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHH---HHHhHHHHHHHHHhHHHhhhhhHHHHHHHH
Q 006984 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE---QLNEMDNFIESLKESLYGAESRAESAEEKV 399 (623)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEesE~---EVaaLerrIelLKEel~rAEsRa~tAesKl 399 (623)
++.....++..++.+++.+..||..++..++.... .+.+|...|+.|+.+...+....+.-....
T Consensus 14 ~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~ 81 (155)
T PF06810_consen 14 DIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQM 81 (155)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456667777777888888888877777766544 667778888888888776655555444333
No 190
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=61.78 E-value=4.2e+02 Score=33.45 Aligned_cols=133 Identities=14% Similarity=0.199 Sum_probs=67.2
Q ss_pred HhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcC----C------hhHHHHHHHHHHHHHH
Q 006984 279 LMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST----K------NSEVLTMKEKVKSLEE 348 (623)
Q Consensus 279 L~g~skel~gkLq~~qf~L~~s~~REsel~sKL~~~~eqL~~k~~~lekl~~s----~------esEv~sLqkKvksLE~ 348 (623)
.-.+.++..+.|.-+.-+-+.+..+=...++.+....+....-++.+-.|+.+ . ..+-....+|-..||-
T Consensus 228 YdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel 307 (1200)
T KOG0964|consen 228 YDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLEL 307 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34567888888888877777777766666666665554444333333333322 0 0111111122223333
Q ss_pred HHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhc
Q 006984 349 QLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKG 418 (623)
Q Consensus 349 qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Les 418 (623)
+.+..+.|+.-- .+.-...-+.++.+++++...+..+...+-|...+.+...-+..-+..|++
T Consensus 308 ~~kdlq~~i~~n-------~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~ 370 (1200)
T KOG0964|consen 308 KIKDLQDQITGN-------EQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQ 370 (1200)
T ss_pred hhHHHHHHhhhh-------hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 333333332211 111122334455566666666666666666666666666666555555555
No 191
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=61.68 E-value=2.3e+02 Score=33.94 Aligned_cols=116 Identities=26% Similarity=0.357 Sum_probs=83.4
Q ss_pred ccchHHHHHHHH--HHH-HhhhhhhhHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhh
Q 006984 207 MKNADQQRHILR--MLE-KSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGIS 283 (623)
Q Consensus 207 mqt~eqqR~iLr--MLe-kSla~eldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~s 283 (623)
.+.--|--.+|| -+. .-+|++ .+++...-....-+.--.+|....+++..+.+.++.+-+|+-+|..--+.|+--.
T Consensus 538 l~lL~~a~~vlreeYi~~~~~ar~-ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~ 616 (717)
T PF10168_consen 538 LELLSQATKVLREEYIEKQDLARE-EIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRV 616 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455565 222 334443 4677776666666666778899999999999999999999999999999999988
Q ss_pred HHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHH
Q 006984 284 KEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQ 326 (623)
Q Consensus 284 kel~gkLq~~qf~L~~s~~REsel~sKL~~~~eqL~~k~~~le 326 (623)
+.++.+++ ..+-....-|.+.+..|+....++.+-...++
T Consensus 617 ~~vl~~l~---~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~ 656 (717)
T PF10168_consen 617 DRVLQLLN---SQLPVLSEAEREFKKELERMKDQLQDLKASIE 656 (717)
T ss_pred HHHHHHHh---ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888775 44555666778888888877777654433333
No 192
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=61.29 E-value=1.5e+02 Score=28.05 Aligned_cols=67 Identities=28% Similarity=0.376 Sum_probs=36.4
Q ss_pred HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhh
Q 006984 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAK 445 (623)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~ 445 (623)
.+.|..++..+.-+++++.+.+..-..+...+-.++..|+++....+ ++..|+.++++.+...+-+-
T Consensus 22 ~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~-----------~~~~L~~el~~l~~ry~t~L 88 (120)
T PF12325_consen 22 QSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKK-----------EVEELEQELEELQQRYQTLL 88 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555556666655543332 45556666666654444443
No 193
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=60.76 E-value=87 Score=31.28 Aligned_cols=89 Identities=21% Similarity=0.334 Sum_probs=57.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHH
Q 006984 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (623)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELer 411 (623)
+......++.++..|..++......+. .+...|+..+..-...++|.. ...++..|.+...+|..
T Consensus 60 ps~~~~~~~~~~~~l~~~~~~~~~~i~--------------~l~~~i~~~~~~r~~~~eR~~-~l~~l~~l~~~~~~l~~ 124 (188)
T PF03962_consen 60 PSQAKQKRQNKLEKLQKEIEELEKKIE--------------ELEEKIEEAKKGREESEEREE-LLEELEELKKELKELKK 124 (188)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhcccccHHHHH-HHHHHHHHHHHHHHHHH
Confidence 456666666666666666555544444 444445555555555566655 67788888888888888
Q ss_pred HhhhhhcCCCCcchhhhhHHHHHHHHH
Q 006984 412 EINFLKGNNDSNTKKVGILENQLRDLE 438 (623)
Q Consensus 412 elk~Lesrs~~deEk~~~LE~QLKEa~ 438 (623)
++..+... |-+++..+...+..++
T Consensus 125 el~~~~~~---Dp~~i~~~~~~~~~~~ 148 (188)
T PF03962_consen 125 ELEKYSEN---DPEKIEKLKEEIKIAK 148 (188)
T ss_pred HHHHHHhc---CHHHHHHHHHHHHHHH
Confidence 88855554 5577777777666554
No 194
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=60.52 E-value=1.7e+02 Score=28.38 Aligned_cols=109 Identities=19% Similarity=0.248 Sum_probs=62.6
Q ss_pred HHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHH--------------HHHhHhhHhhhHHHHH
Q 006984 307 LKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIR--------------LQNANACFQTSQEQLN 372 (623)
Q Consensus 307 l~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQ--------------L~~A~aklEesE~EVa 372 (623)
++..+.....||..++..=+-||- -++-.|+-...++-..+++=+.. |.+.+.++-....+..
T Consensus 18 lk~~l~k~~~ql~~ke~lge~L~~---iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~ 94 (177)
T PF13870_consen 18 LKHQLAKLEEQLRQKEELGEGLHL---IDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELE 94 (177)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666665544444443 23333333333333333332222 3444555555566777
Q ss_pred hHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhc
Q 006984 373 EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKG 418 (623)
Q Consensus 373 aLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Les 418 (623)
.+...|...++.+.+....+..+...+..+...+..+......+..
T Consensus 95 ~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~ 140 (177)
T PF13870_consen 95 RLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGV 140 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 7777777777777777777777777777777777777666665543
No 195
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=60.30 E-value=1.3e+02 Score=26.97 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=33.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006984 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL 567 (623)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L 567 (623)
...++.|.++++.-+.++....+.++.++..++.+.+.+
T Consensus 65 ~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 65 RTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888899999999999999999999998888776543
No 196
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=59.87 E-value=1.3e+02 Score=32.66 Aligned_cols=81 Identities=17% Similarity=0.206 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh----HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHH
Q 006984 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS----QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLE 408 (623)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes----E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdE 408 (623)
...+..+++++..|...++.|..++..-....... -..+++..+.+..+-.++.+++.|+..+.+|......+-..
T Consensus 87 ~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~ 166 (301)
T PF06120_consen 87 KRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQATLND 166 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888888888877776654422111111 23466788888888888999999999988888877766554
Q ss_pred HHHHh
Q 006984 409 LSEEI 413 (623)
Q Consensus 409 Lerel 413 (623)
+.+.+
T Consensus 167 ~~~~~ 171 (301)
T PF06120_consen 167 LTEQR 171 (301)
T ss_pred HHHHH
Confidence 44443
No 197
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=59.77 E-value=2.2e+02 Score=29.51 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=10.7
Q ss_pred hhhHHHHHHHHHHHHHHhh
Q 006984 427 VGILENQLRDLEIQLQQAK 445 (623)
Q Consensus 427 ~~~LE~QLKEa~~QLqhA~ 445 (623)
+..||.++.+.+.+.+..+
T Consensus 122 ~~~Le~Ki~e~~~~~~~l~ 140 (225)
T COG1842 122 LAALEQKIAELRAKKEALK 140 (225)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5556666666655555444
No 198
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=59.50 E-value=2.2e+02 Score=29.43 Aligned_cols=61 Identities=18% Similarity=0.263 Sum_probs=25.5
Q ss_pred HHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHH
Q 006984 377 FIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQL 441 (623)
Q Consensus 377 rIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QL 441 (623)
.+..+..++..++..+..|..++.. +..+++|-.+.++.. .....-++..+.++..++.++
T Consensus 102 ~~~~~~~~i~~~~~~~~~a~~~l~~---a~~~~~r~~~L~~~g-~is~~~~~~a~~~~~~a~~~l 162 (334)
T TIGR00998 102 TVQQLQAKVESLKIKLEQAREKLLQ---AELDLRRRVPLFKKG-LISREELDHARKALLSAKAAL 162 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHCC-CcCHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444332 344555555444443 323233333344444444333
No 199
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=59.47 E-value=1.2e+02 Score=26.25 Aligned_cols=67 Identities=18% Similarity=0.275 Sum_probs=41.7
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhh-------------------------HHHHHHhHHHHHHHHHHHHHHHHHH
Q 006984 499 ELKNKQSFMRDKIKILESSLNRANIEKAAS-------------------------AKEVNHRTKLMMEMVMQLATQRELI 553 (623)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~k~~t-------------------------lKeae~Rak~aE~lV~KL~~ErdrL 553 (623)
.|..++..+...+..|+..+..+....++- .+.+..+.+.++.-+.+|...+..+
T Consensus 9 ~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l 88 (106)
T PF01920_consen 9 ELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYL 88 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666665554433332 6666666777777777777766666
Q ss_pred HHHHHHHHHhhh
Q 006984 554 QKQVYSLTSENK 565 (623)
Q Consensus 554 e~ql~s~keenK 565 (623)
..++..++..++
T Consensus 89 ~~~l~~~~~~l~ 100 (106)
T PF01920_consen 89 EKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666655544
No 200
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=59.45 E-value=81 Score=32.15 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=58.4
Q ss_pred hHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHH
Q 006984 322 DMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQ 401 (623)
Q Consensus 322 ~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~ 401 (623)
+.-|+.+.-.+-+++..+-+-|-.||+.+|..++++.+--..+.+.++.-.++.+.+.-+|.+|-.-+.+++.-..=++-
T Consensus 60 ekYLe~lNlPSr~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~ 139 (189)
T TIGR02132 60 GNYLEQVNVPTKEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEG 139 (189)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33455555556788999999999999999999999888666666554444455555555555555555555444444443
Q ss_pred HhhhhHHHHHH
Q 006984 402 LTDTNLELSEE 412 (623)
Q Consensus 402 LseTNdELere 412 (623)
--+|-|||.+-
T Consensus 140 ~~~~~~~~~~~ 150 (189)
T TIGR02132 140 QQKTQDELKET 150 (189)
T ss_pred CccchhHHHHH
Confidence 44555555544
No 201
>PRK11281 hypothetical protein; Provisional
Probab=59.17 E-value=4.7e+02 Score=33.17 Aligned_cols=58 Identities=14% Similarity=0.073 Sum_probs=47.0
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccch
Q 006984 244 LKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSL 301 (623)
Q Consensus 244 Lk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~~s~ 301 (623)
|..+|...++...........+...+..+.+..|--+....+.+.|+|.+...|++..
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~ 183 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGK 183 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4555555566666677778888889999999999999999999999999999998843
No 202
>PF15456 Uds1: Up-regulated During Septation
Probab=58.97 E-value=1.4e+02 Score=28.26 Aligned_cols=74 Identities=24% Similarity=0.339 Sum_probs=50.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHH------HhHh------------------hHhhhHHHHHhHHHHHHHHHhHHHh
Q 006984 332 KNSEVLTMKEKVKSLEEQLKESEIRLQ------NANA------------------CFQTSQEQLNEMDNFIESLKESLYG 387 (623)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~------~A~a------------------klEesE~EVaaLerrIelLKEel~r 387 (623)
+-+||..|.+.++.|...++-....+. +|-. .....+++++..+++|+++-.++.+
T Consensus 20 s~eEVe~LKkEl~~L~~R~~~lr~kl~le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~ 99 (124)
T PF15456_consen 20 SFEEVEELKKELRSLDSRLEYLRRKLALESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWK 99 (124)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 356666676666666666665554432 1111 1222377999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhhh
Q 006984 388 AESRAESAEEKVTQLTDT 405 (623)
Q Consensus 388 AEsRa~tAesKle~LseT 405 (623)
+|.|+.....++-+=+-+
T Consensus 100 le~R~~~~~~rLLeH~Aa 117 (124)
T PF15456_consen 100 LENRLAEVRQRLLEHTAA 117 (124)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999888887554433
No 203
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=58.49 E-value=1.8e+02 Score=33.42 Aligned_cols=21 Identities=10% Similarity=0.192 Sum_probs=12.7
Q ss_pred hHHhHHHHHHHHHhhhhcccc
Q 006984 108 ELREVERLLDTIHVEIVNVHH 128 (623)
Q Consensus 108 Ev~ele~~~~~lq~~I~~~~~ 128 (623)
.+.+|=+|++.-...|.+.+-
T Consensus 87 t~~Dll~F~~~~~~~I~~iri 107 (493)
T KOG0804|consen 87 TSHDLLRFCASFIKQISDIRI 107 (493)
T ss_pred cHHHHHHHHHHHhhhhheeEE
Confidence 345555666666666666554
No 204
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=57.59 E-value=5e+02 Score=32.98 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=20.9
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhHhHHH
Q 006984 424 TKKVGILENQLRDLEIQLQQAKVSSEASQE 453 (623)
Q Consensus 424 eEk~~~LE~QLKEa~~QLqhA~asaEas~e 453 (623)
+++++.+-.|-..++.|++.....-...++
T Consensus 278 t~~~n~l~~~~~~~~~~l~~~~q~~~~i~e 307 (1109)
T PRK10929 278 AQRMDLIASQQRQAASQTLQVRQALNTLRE 307 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888887877777777665555554
No 205
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=57.44 E-value=43 Score=28.31 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=37.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006984 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (623)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (623)
+-++++|.-|.+++|.+|...+=+-+.+|..+....+.|.+++....
T Consensus 6 i~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 6 IEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788899999999999999998888889999888888888888765
No 206
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=55.74 E-value=2e+02 Score=30.04 Aligned_cols=38 Identities=5% Similarity=-0.164 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCceeeecc
Q 006984 548 TQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNA 585 (623)
Q Consensus 548 ~ErdrLe~ql~s~keenK~L~ekld~t~~~~~~~~~~~ 585 (623)
.+++.++.++...+.........++++...+|+.-++.
T Consensus 178 ~~~~~~~~~l~~~~~~l~~a~~~l~~~~I~AP~dG~V~ 215 (331)
T PRK03598 178 QDIAQAKASLAQAQAALAQAELNLQDTELIAPSDGTIL 215 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCeEEE
Confidence 45667777788888888888888888888888877665
No 207
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=55.16 E-value=4e+02 Score=31.13 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=18.5
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhh
Q 006984 467 TLIEDLKSKVSKAESKTESVEEQCI 491 (623)
Q Consensus 467 ~vIEdLk~Kl~rAE~RaE~aEsKc~ 491 (623)
.=|++|-.++..|+.++-.+...|-
T Consensus 420 ~RI~eLt~qlQ~adSKa~~f~~Ec~ 444 (518)
T PF10212_consen 420 SRIEELTSQLQHADSKAVHFYAECR 444 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666778888888777777777
No 208
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=54.70 E-value=3e+02 Score=29.58 Aligned_cols=79 Identities=22% Similarity=0.337 Sum_probs=57.1
Q ss_pred hhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHH-----------------HHHHHHHHHHH
Q 006984 489 QCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMM-----------------EMVMQLATQRE 551 (623)
Q Consensus 489 Kc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE-----------------~lV~KL~~Erd 551 (623)
+|..++++-.+|...|..|..+.+..+..+.+.|+.=..|=+|++.-++-+. ..+..+..++.
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~ 282 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQ 282 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 7888888999999999999999999999999999988888555554444333 33445555555
Q ss_pred HHHHHHHHHHHhhhHH
Q 006984 552 LIQKQVYSLTSENKLL 567 (623)
Q Consensus 552 rLe~ql~s~keenK~L 567 (623)
.+..++-.++.+...|
T Consensus 283 ~~~~~~~~~~~k~~kL 298 (309)
T PF09728_consen 283 KLEKELEKLKKKIEKL 298 (309)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555554444
No 209
>PRK00295 hypothetical protein; Provisional
Probab=54.49 E-value=57 Score=27.77 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=41.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006984 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (623)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (623)
+-+++.|.-|-+++|..|...+=+.+.+|..+....+.|.+.+....
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67888999999999999999999999999888888888888888754
No 210
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=54.29 E-value=1.7e+02 Score=34.81 Aligned_cols=71 Identities=21% Similarity=0.330 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh---HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHh
Q 006984 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS---QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT 403 (623)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes---E~EVaaLerrIelLKEel~rAEsRa~tAesKle~Ls 403 (623)
..|++.|..++..+...+..+..+|..+....... .-++..++++|..|+-++.+..++.+.-..|+..+-
T Consensus 435 ~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 435 EEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777777777666665533 448888999999999888888887777666666554
No 211
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=54.03 E-value=2.5e+02 Score=28.35 Aligned_cols=44 Identities=16% Similarity=0.182 Sum_probs=26.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 006984 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQ 572 (623)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld 572 (623)
+..++....-....|.+|...+.+|+.+|...+-+-..|.-...
T Consensus 101 ~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~ 144 (219)
T TIGR02977 101 AEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQ 144 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556666677777777777777666666555544443
No 212
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=53.79 E-value=5e+02 Score=31.78 Aligned_cols=103 Identities=20% Similarity=0.247 Sum_probs=65.0
Q ss_pred HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcc--hhhhhHHHHHHHHHHHHHHhh
Q 006984 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNT--KKVGILENQLRDLEIQLQQAK 445 (623)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~de--Ek~~~LE~QLKEa~~QLqhA~ 445 (623)
.+-|--|+....-.++.+.+...+++.-++++.-+..|||+....+. .++|.-.|+ ++-..|=.|+-+.+.-|+.+.
T Consensus 522 ~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlq-k~nrlkQdear~~~~~lvqqv~dLR~~L~~~E 600 (961)
T KOG4673|consen 522 QETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQ-KENRLKQDEARERESMLVQQVEDLRQTLSKKE 600 (961)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHH-HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677788888888999999999999999999999999999877332 233321111 222333344444443333322
Q ss_pred hhhHhHHHHHhhhHHHHHhHH----HHHHHHhhhhhhhhhhhhh
Q 006984 446 VSSEASQEQQSMLYSAIWDME----TLIEDLKSKVSKAESKTES 485 (623)
Q Consensus 446 asaEas~eqQ~mky~ei~dme----~vIEdLk~Kl~rAE~RaE~ 485 (623)
.. ++|.+ .=|+||+-.|.-||-|++.
T Consensus 601 q~--------------aarrEd~~R~Ei~~LqrRlqaaE~R~ee 630 (961)
T KOG4673|consen 601 QQ--------------AARREDMFRGEIEDLQRRLQAAERRCEE 630 (961)
T ss_pred HH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22222 4578888888888877554
No 213
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=52.84 E-value=2.5e+02 Score=30.94 Aligned_cols=100 Identities=20% Similarity=0.284 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHhhhHHH-----HHhHHHHHHHH------HhHHHhhhhhHHHHHHHHHHHhhhhHHH
Q 006984 341 EKVKSLEEQLKESEIRLQNANACFQTSQEQ-----LNEMDNFIESL------KESLYGAESRAESAEEKVTQLTDTNLEL 409 (623)
Q Consensus 341 kKvksLE~qLdes~eQL~~A~aklEesE~E-----VaaLerrIelL------KEel~rAEsRa~tAesKle~LseTNdEL 409 (623)
-++...+.+++....++..+++.++..++. ..+++|+-.+. .++++.|..-...|..-+.... ...
T Consensus 98 a~la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~~R~~~L~~~g~vs~~~~~~a~~a~~~A~A~~~~a~---~~~ 174 (352)
T COG1566 98 AALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNELERRAELAQRGVVSREELDRARAALQAAEAALAAAQ---AAQ 174 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhH---HHH
Confidence 344444444444444444444444443332 33667777777 5666666666666666665554 334
Q ss_pred HHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHH
Q 006984 410 SEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQ 443 (623)
Q Consensus 410 erelk~Lesrs~~deEk~~~LE~QLKEa~~QLqh 443 (623)
+..+..|.+.-......+..++.+++.++..|+.
T Consensus 175 ~~~~~~l~~~~~~~~~~v~~a~a~~~~A~l~L~~ 208 (352)
T COG1566 175 KQNLALLESEVSGAQAQVASAEAALDQAKLDLER 208 (352)
T ss_pred HHHHHHHhhhhccchhHHHHHHHHHHHHHHHhhC
Confidence 4445555555443444555555555555544443
No 214
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=52.77 E-value=91 Score=29.95 Aligned_cols=61 Identities=23% Similarity=0.321 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHH--HHHhHHHHHHHHHhHHHhhhhhHH
Q 006984 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE--QLNEMDNFIESLKESLYGAESRAE 393 (623)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~--EVaaLerrIelLKEel~rAEsRa~ 393 (623)
++|+..|...+..|.+++...........+.+-...+ ....|...|..|+.++..-++|+.
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666555555444433222 222444445555544444444433
No 215
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=52.71 E-value=1.5e+02 Score=26.80 Aligned_cols=76 Identities=21% Similarity=0.375 Sum_probs=38.7
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHH------HHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhH
Q 006984 427 VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME------TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFEL 500 (623)
Q Consensus 427 ~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme------~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~EL 500 (623)
...|+.+++|.+.=+..=..+.+++. -|--|-++. .++.+|+.... ..+..+. .|
T Consensus 26 ~~~le~~~~E~~~v~~eL~~l~~d~~-----vyk~VG~vlv~~~~~e~~~~l~~r~e-------~ie~~i~-------~l 86 (110)
T TIGR02338 26 KQQVEAQLKEAEKALEELERLPDDTP-----VYKSVGNLLVKTDKEEAIQELKEKKE-------TLELRVK-------TL 86 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcch-----hHHHhchhhheecHHHHHHHHHHHHH-------HHHHHHH-------HH
Confidence 44555555555533333333333333 255554443 44444444444 4444555 66
Q ss_pred HHHHHHHHhhHHHHHHHHHHH
Q 006984 501 KNKQSFMRDKIKILESSLNRA 521 (623)
Q Consensus 501 eEEL~~l~~~lksLE~sl~kA 521 (623)
++.+..++.+++.++.++.++
T Consensus 87 ek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 87 QRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666667777777777666554
No 216
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=52.57 E-value=3.6e+02 Score=29.85 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=10.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhH
Q 006984 500 LKNKQSFMRDKIKILESSLNRANI 523 (623)
Q Consensus 500 LeEEL~~l~~~lksLE~sl~kA~q 523 (623)
..++|...+.++..+++.+.++..
T Consensus 289 ~~~~l~~~~~~l~~~~~~l~~a~~ 312 (457)
T TIGR01000 289 VKQEITDLNQKLLELESKIKSLKE 312 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 217
>PRK00736 hypothetical protein; Provisional
Probab=52.19 E-value=65 Score=27.42 Aligned_cols=47 Identities=17% Similarity=0.097 Sum_probs=42.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006984 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (623)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (623)
+-+++.|.-|-+++|..|...+=+-+.+|..++..-+.|.+++....
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67889999999999999999999999999999999999999998754
No 218
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=52.10 E-value=3.4e+02 Score=29.41 Aligned_cols=76 Identities=21% Similarity=0.330 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHH
Q 006984 392 AESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIED 471 (623)
Q Consensus 392 a~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme~vIEd 471 (623)
..++...+-+.-+..-|++.++. + .+..+|.++|.+....|.-+.-.++.+++|.--|..-.+-+.+.+
T Consensus 29 f~~~reEl~EFQegSrE~Eaele---s-------qL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Le- 97 (333)
T KOG1853|consen 29 FLQMREELNEFQEGSREIEAELE---S-------QLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLE- 97 (333)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHH---H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34444444445455555554443 1 356667777776666666666666666655555555555555544
Q ss_pred Hhhhhhhhh
Q 006984 472 LKSKVSKAE 480 (623)
Q Consensus 472 Lk~Kl~rAE 480 (623)
.++++.-
T Consensus 98 --ddlsqt~ 104 (333)
T KOG1853|consen 98 --DDLSQTH 104 (333)
T ss_pred --HHHHHHH
Confidence 5555443
No 219
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.77 E-value=3e+02 Score=28.68 Aligned_cols=95 Identities=18% Similarity=0.189 Sum_probs=65.8
Q ss_pred hhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHH---------HHHHHHHhHHHHhh----------------
Q 006984 474 SKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL---------ESSLNRANIEKAAS---------------- 528 (623)
Q Consensus 474 ~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksL---------E~sl~kA~q~k~~t---------------- 528 (623)
.-...-..|+++.|.||. .|.-||..|+..++-. -...-+....|-.|
T Consensus 19 dai~~v~~r~dSve~KIs-------kLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQ 91 (218)
T KOG1655|consen 19 DAIDSVNKRSDSVEKKIS-------KLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQ 91 (218)
T ss_pred HHHHHHHHhhhhHHHHHH-------HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 444566788889999998 8888888887766532 11111111112222
Q ss_pred -------HHHHHHhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006984 529 -------AKEVNHRTKLMMEMVMQLATQ--------RELIQKQVYSLTSENKLLVEKLQYSG 575 (623)
Q Consensus 529 -------lKeae~Rak~aE~lV~KL~~E--------rdrLe~ql~s~keenK~L~ekld~t~ 575 (623)
+|+.-+-...+.+.+.++..+ +++|+|++.-+.+....|.+-|-.+-
T Consensus 92 a~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y 153 (218)
T KOG1655|consen 92 ANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNY 153 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 788877777888888888764 78999999999998888887776653
No 220
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=51.62 E-value=38 Score=36.31 Aligned_cols=76 Identities=13% Similarity=0.336 Sum_probs=63.1
Q ss_pred HHHHHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhh
Q 006984 96 LVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQ 175 (623)
Q Consensus 96 ~efDlL~gildsEv~ele~~~~~lq~~I~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~~e~~~ei~~qsa~f~ 175 (623)
-.+++|++|||.-|.-+-..+..+..+|.+.++.|.+-.+ +. .+.+.-.++.+.++.++.+|.-...++
T Consensus 128 ~~~~vl~~Lld~iVd~~ad~lE~~~~~ld~ls~~if~~~~-~~----------~~~~~l~~i~~l~~~~~~~r~~l~~~~ 196 (316)
T PRK11085 128 NAYELLLDLFETKIEQLADEIENIYSDLEKLSRVIMEGHQ-GD----------EYDEALSTLAELEDIGWKVRLCLMDTQ 196 (316)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCC-ch----------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999876432 11 234444779999999999999999999
Q ss_pred hhhhhcc
Q 006984 176 RVLSYFI 182 (623)
Q Consensus 176 r~~~~~~ 182 (623)
|++.++.
T Consensus 197 r~l~~l~ 203 (316)
T PRK11085 197 RALNFLV 203 (316)
T ss_pred HHHHHHh
Confidence 9998865
No 221
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=51.49 E-value=1.1e+02 Score=25.12 Aligned_cols=48 Identities=23% Similarity=0.293 Sum_probs=38.6
Q ss_pred HHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006984 517 SLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSEN 564 (623)
Q Consensus 517 sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keen 564 (623)
+..+.-+++..|+.+++.+....+.-...|..+++.|..++..+..+|
T Consensus 16 AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 16 AARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345667888889999998888888888888888888888888777665
No 222
>PRK00846 hypothetical protein; Provisional
Probab=50.75 E-value=77 Score=28.03 Aligned_cols=49 Identities=14% Similarity=0.036 Sum_probs=44.1
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006984 527 ASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (623)
Q Consensus 527 ~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (623)
..+-++++|.-|-+++|..|...+=+.+.+|..++...+.|.++++...
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3477889999999999999999999999999999999999999999876
No 223
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=49.88 E-value=7e+02 Score=32.35 Aligned_cols=128 Identities=21% Similarity=0.207 Sum_probs=80.9
Q ss_pred HHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcccCCCcccccccccCCcccccccccccchHHHHHHHHHHHH
Q 006984 143 MEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEK 222 (623)
Q Consensus 143 ~~~~~~kL~~~~~sLkq~~e~~~ei~~qsa~f~r~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~mqt~eqqR~iLrMLek 222 (623)
|.++.........++....-.+...++..-.+.|.++...+-.. -+++...=++.
T Consensus 821 ~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~-------------------------e~k~~~~~~~~ 875 (1294)
T KOG0962|consen 821 VDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRN-------------------------ELKEEKQKIER 875 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHH
Confidence 44557777777888888888888889999999999988663222 13444555677
Q ss_pred hhhhhhhHHHhhHHHhhhHHHHHhhhhhhh----HHHHHHHHHHHHHHHHHHhc---cchHHHHhhhhHHHHhhhhHHhh
Q 006984 223 SLARELDLEKKISELNQNEEQLKLKLHHTE----QVAFRMEEAAEVVWGRFLEA---ENSAEVLMGISKEMLGRFQIVQF 295 (623)
Q Consensus 223 Sla~eldLEkkL~~s~~~eeeLk~kL~~~e----qe~~~lEE~~~~~~er~~EA---ENa~EvL~g~skel~gkLq~~qf 295 (623)
+|++---||..+++.++-.--+..++.... -.+..++++..+...-..++ +=.++-.+...++....|+.+++
T Consensus 876 ~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~~~~ 955 (1294)
T KOG0962|consen 876 SLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQIYK 955 (1294)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888887775555544444333 34455555555444443332 22233334555677777777665
No 224
>PRK04325 hypothetical protein; Provisional
Probab=49.86 E-value=72 Score=27.59 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=42.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006984 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (623)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (623)
+-+++.|.-|-+++|..|...+=+-+.+|..+....+.|.++++...
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77888999999999999999999999999999999999999888754
No 225
>PTZ00464 SNF-7-like protein; Provisional
Probab=49.14 E-value=1.4e+02 Score=30.71 Aligned_cols=73 Identities=7% Similarity=0.150 Sum_probs=50.6
Q ss_pred hhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006984 477 SKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQ 556 (623)
Q Consensus 477 ~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~q 556 (623)
.+-+.|.+..+.|+- .|+.|+..++..++..-. .+....-..|+-+-.|.+..|....++......|+.+
T Consensus 21 ~~l~~r~~~l~kKi~-------~ld~E~~~ak~~~k~~~~---~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~ 90 (211)
T PTZ00464 21 KRIGGRSEVVDARIN-------KIDAELMKLKEQIQRTRG---MTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQL 90 (211)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcc---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666777776 688888888877764322 2223334457777788888888888888888888877
Q ss_pred HHH
Q 006984 557 VYS 559 (623)
Q Consensus 557 l~s 559 (623)
+++
T Consensus 91 ~~~ 93 (211)
T PTZ00464 91 QFT 93 (211)
T ss_pred HHH
Confidence 655
No 226
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=48.61 E-value=4e+02 Score=29.23 Aligned_cols=199 Identities=25% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHH-hHHHHHHHHHhHHH
Q 006984 308 KSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLN-EMDNFIESLKESLY 386 (623)
Q Consensus 308 ~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVa-aLerrIelLKEel~ 386 (623)
+..|...+..|.+....| ..|+-...-+.+.|..+++..........++.|.-|+-|+ .|-++|+.|+-+-.
T Consensus 22 ~~~l~~~~~sL~qen~~L-------k~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe 94 (310)
T PF09755_consen 22 REQLRKRIESLQQENRVL-------KRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKE 94 (310)
T ss_pred hHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHH
Q 006984 387 GAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME 466 (623)
Q Consensus 387 rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme 466 (623)
.---....=+.-++ ..|.+.+.-|+. +|+ .||++| ....+
T Consensus 95 ~L~~~~e~EEE~lt------n~L~rkl~qLr~------EK~-~lE~~L---------------------------e~EqE 134 (310)
T PF09755_consen 95 TLALKYEQEEEFLT------NDLSRKLNQLRQ------EKV-ELENQL---------------------------EQEQE 134 (310)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHH------HHH-HHHHHH---------------------------HHhHH
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHH
Q 006984 467 TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQL 546 (623)
Q Consensus 467 ~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL 546 (623)
.+|.-|..++.+.+.. +. .+..+|.-++.---.||+.|++..+
T Consensus 135 ~~V~kL~k~i~~Le~e-------~~-------~~q~~le~Lr~EKVdlEn~LE~EQE----------------------- 177 (310)
T PF09755_consen 135 YLVNKLQKKIERLEKE-------KS-------AKQEELERLRREKVDLENTLEQEQE----------------------- 177 (310)
T ss_pred HHHHHHHHHHHHHHHH-------HH-------HhHHHHHHHHHHHHhHHHHHHHHHH-----------------------
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCceee-----eccCCCCCc
Q 006984 547 ATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATM-----YNAGDTDDK 591 (623)
Q Consensus 547 ~~ErdrLe~ql~s~keenK~L~ekld~t~~~~~~~~-----~~~~~~~~~ 591 (623)
.=|.||..|+.-+..+++.|-.+|++..-+||-.. ...+||-++
T Consensus 178 -~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~ 226 (310)
T PF09755_consen 178 -ALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAER 226 (310)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhH
No 227
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=48.50 E-value=97 Score=29.51 Aligned_cols=72 Identities=21% Similarity=0.344 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHH------hHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHH
Q 006984 428 GILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIW------DMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELK 501 (623)
Q Consensus 428 ~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~------dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELe 501 (623)
..+|.+|+|.+.-|..--.+.+++.- |-.|- ++..++.+|..+.+.-|-|....+.+-- .+.
T Consensus 30 ~~le~qL~E~~~al~Ele~l~eD~~v-----Yk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~-------~l~ 97 (119)
T COG1382 30 QQLEAQLKEIEKALEELEKLDEDAPV-----YKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQEE-------KLQ 97 (119)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccHH-----HHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 34566666665555554455555543 55444 3446777777777777776666666665 444
Q ss_pred HHHHHHHhhH
Q 006984 502 NKQSFMRDKI 511 (623)
Q Consensus 502 EEL~~l~~~l 511 (623)
+++.-+.+.+
T Consensus 98 e~l~eLq~~i 107 (119)
T COG1382 98 ERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 228
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=48.32 E-value=86 Score=27.21 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=37.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 006984 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (623)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t 574 (623)
+..++.|..-+-++++-|+.+++.|..+-.++.++|..|..+..+.
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L 51 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQL 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 5667888888888999999999999998888888888877766654
No 229
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=48.02 E-value=1.2e+02 Score=26.22 Aligned_cols=62 Identities=16% Similarity=0.265 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHH
Q 006984 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAES 394 (623)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~t 394 (623)
|..+..|++.-..|-.+--.....+....++..+.+..+..+..++..+..++...+.|+..
T Consensus 11 De~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444555444444333333333344444444445556666666666666666666665543
No 230
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=47.75 E-value=94 Score=26.17 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=22.9
Q ss_pred hHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHH
Q 006984 363 CFQTSQEQLNEMDNFIESLKESLYGAESRAESAE 396 (623)
Q Consensus 363 klEesE~EVaaLerrIelLKEel~rAEsRa~tAe 396 (623)
+.....++|.+|..-++..+++..||-.|+.+--
T Consensus 18 kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 18 KVDQLSSDVNALRADVQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3333445566666667777888888888887654
No 231
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=47.54 E-value=81 Score=28.67 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=39.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 006984 530 KEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (623)
Q Consensus 530 Keae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~ 573 (623)
+.++.-.+++++-+..|...++.|+..+..+.+....+...+++
T Consensus 82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~~ 125 (126)
T TIGR00293 82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQQ 125 (126)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67777788999999999999999999999999999999888875
No 232
>PRK09343 prefoldin subunit beta; Provisional
Probab=47.34 E-value=2.4e+02 Score=26.26 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=32.4
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006984 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLV 568 (623)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ 568 (623)
..+++..|.++++.-+..|.+..++|+.++.......+.+.
T Consensus 72 ~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 72 VEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999998888888888888888777766665543
No 233
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=46.78 E-value=7.2e+02 Score=31.62 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=24.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006984 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTS 562 (623)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~ke 562 (623)
.+....+.+.++..+--|..|...|.+||.+++.
T Consensus 525 ye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 525 YELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 6666667777777777777777777777777766
No 234
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=46.72 E-value=4.5e+02 Score=29.22 Aligned_cols=89 Identities=21% Similarity=0.183 Sum_probs=55.9
Q ss_pred HHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhc-------C-----ChhH
Q 006984 268 RFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLES-------T-----KNSE 335 (623)
Q Consensus 268 r~~EAENa~EvL~g~skel~gkLq~~qf~L~~s~~REsel~sKL~~~~eqL~~k~~~lekl~~-------s-----~esE 335 (623)
.-|=.+...+.|++..+.-++.++.++..+.+...+=.....+++..+ ...+-.....+.. + +.+=
T Consensus 116 ~DFVd~~~v~~L~~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 193 (412)
T PF04108_consen 116 YDFVDEDSVEILRENLKISIDELQAIQEQLDNSLLQFDNDLRKLKKQL--INKRLKDYELLAPFQSSLGSSPSSSSSNPL 193 (412)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--hhhhhhhhhhccccccccCCCCCccccccc
Confidence 446677788999999999999999999999998887666666666655 1211111121100 0 0233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006984 336 VLTMKEKVKSLEEQLKESEIRLQ 358 (623)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~ 358 (623)
...+-+-+.+||.++...-+.|.
T Consensus 194 ~~~i~~~l~~le~ema~lL~sLt 216 (412)
T PF04108_consen 194 MSTILKELHSLEQEMASLLESLT 216 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777766666555544
No 235
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=46.06 E-value=30 Score=29.05 Aligned_cols=29 Identities=31% Similarity=0.503 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhHHHhhhhhHHHHHHHHHH
Q 006984 373 EMDNFIESLKESLYGAESRAESAEEKVTQ 401 (623)
Q Consensus 373 aLerrIelLKEel~rAEsRa~tAesKle~ 401 (623)
+++-|+..||..+..||.|++.|+.+...
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777766544
No 236
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.79 E-value=1.2e+02 Score=34.60 Aligned_cols=72 Identities=29% Similarity=0.327 Sum_probs=49.6
Q ss_pred HHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhh
Q 006984 396 EEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSK 475 (623)
Q Consensus 396 esKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme~vIEdLk~K 475 (623)
+...+.+-+--..++|+++.|+-+.+ .---...||++.+-++ |++.. +.+-+.-|+.-|++||.|
T Consensus 106 eqertq~qq~~e~~erEv~~l~~lls-r~~~~~~Lenem~ka~----------Ed~eK----lrelv~pmekeI~elk~k 170 (542)
T KOG0993|consen 106 EQERTQLQQNEEKLEREVKALMELLS-RGQYQLDLENEMDKAK----------EDEEK----LRELVTPMEKEINELKKK 170 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHH----------hhHHH----HHHHHhhHHHHHHHHHHH
Confidence 34444555555667788777765532 0013567888877665 45554 566788999999999999
Q ss_pred hhhhhhh
Q 006984 476 VSKAESK 482 (623)
Q Consensus 476 l~rAE~R 482 (623)
+.+||.|
T Consensus 171 l~~aE~~ 177 (542)
T KOG0993|consen 171 LAKAEQR 177 (542)
T ss_pred HHhHHHH
Confidence 9999986
No 237
>PRK02793 phi X174 lysis protein; Provisional
Probab=45.76 E-value=1.1e+02 Score=26.42 Aligned_cols=48 Identities=21% Similarity=0.205 Sum_probs=41.2
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006984 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (623)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (623)
.+-+++.|.-|-+++|..|...+=+-+.+|..+....+.|.++++...
T Consensus 9 Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 9 RLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 466788888899999999999999999999999989999988888754
No 238
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=45.56 E-value=6.6e+02 Score=30.80 Aligned_cols=213 Identities=19% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhccchHHHHhh-hhHHHHhhhh-HHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhH
Q 006984 258 MEEAAEVVWGRFLEAENSAEVLMG-ISKEMLGRFQ-IVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSE 335 (623)
Q Consensus 258 lEE~~~~~~er~~EAENa~EvL~g-~skel~gkLq-~~qf~L~~s~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esE 335 (623)
||+..+.+-+-++.|.|+...++. .+++++.||. .+...|+.+..-.+ |+.||...-+...--+..-+-+|-
T Consensus 434 Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~g-Lk~kL~~Lr~E~sKa~~~~~~~~~----- 507 (762)
T PLN03229 434 LEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMG-LQERLENLREEFSKANSQDQLMHP----- 507 (762)
T ss_pred HHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHHHHhcccccccccH-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHhHhhHhhhHHHHH-----------------------------hHHHHHHHHHh
Q 006984 336 VLTMKEKVKSLEEQLKESEIR---LQNANACFQTSQEQLN-----------------------------EMDNFIESLKE 383 (623)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQ---L~~A~aklEesE~EVa-----------------------------aLerrIelLKE 383 (623)
.|.+|+..|-++++.--.. .-..+.+++...+.+. .+...++.++.
T Consensus 508 --~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e~~~~~~~kek~ea~~a 585 (762)
T PLN03229 508 --VLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIKEKMEALKA 585 (762)
T ss_pred --HHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHhcccHHHHHHHHHHHH
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh-----hhhcCCCCcc-------------------hhhhhHHHHHHHHHH
Q 006984 384 SLYGAESRAESAEEKVTQLTDTNLELSEEIN-----FLKGNNDSNT-------------------KKVGILENQLRDLEI 439 (623)
Q Consensus 384 el~rAEsRa~tAesKle~LseTNdELerelk-----~Lesrs~~de-------------------Ek~~~LE~QLKEa~~ 439 (623)
+|.+ +-+.....=-..+-+--.++++++. ++++-+..-. .|++.|+.|++.
T Consensus 586 ev~~--~g~s~~~~~~~~lkeki~~~~~Ei~~eie~v~~S~gL~~~~~~k~e~a~~~~~p~~~~k~KIe~L~~eIkk--- 660 (762)
T PLN03229 586 EVAS--SGASSGDELDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDTAEQTPPPNLQEKIESLNEEINK--- 660 (762)
T ss_pred HHHh--cCccccCCCCHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhhhhcccccCCChhhHHHHHHHHHHHHH---
Q ss_pred HHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhh-hhhhhhhccchhhHHHHHH
Q 006984 440 QLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESV-EEQCIVLSEDNFELKNKQS 505 (623)
Q Consensus 440 QLqhA~asaEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~a-EsKc~~Lse~N~ELeEEL~ 505 (623)
.++++.+- +++-..||.||.++.+|=.--+.. -.||- -|+++++
T Consensus 661 ------kIe~av~s---------s~LK~k~E~Lk~Evaka~~~pd~~~k~kie-------al~~qik 705 (762)
T PLN03229 661 ------KIERVIRS---------SDLKSKIELLKLEVAKASKTPDVTEKEKIE-------ALEQQIK 705 (762)
T ss_pred ------HHHHHhcc---------hhHHHHHHHHHHHHHhcCCCCCcchHHHHH-------HHHHHHH
No 239
>PRK09343 prefoldin subunit beta; Provisional
Probab=45.55 E-value=2.6e+02 Score=26.07 Aligned_cols=77 Identities=18% Similarity=0.325 Sum_probs=40.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHH------HHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhH
Q 006984 427 VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME------TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFEL 500 (623)
Q Consensus 427 ~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme------~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~EL 500 (623)
...|+.+++|++.=+.+=....+++.- |--|-+++ .++.+|..++ |..+.++. .|
T Consensus 30 ~~~le~q~~e~~~~~~EL~~L~~d~~V-----Yk~VG~vlv~qd~~e~~~~l~~r~-------E~ie~~ik-------~l 90 (121)
T PRK09343 30 KSQIDLELREINKALEELEKLPDDTPI-----YKIVGNLLVKVDKTKVEKELKERK-------ELLELRSR-------TL 90 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcchh-----HHHhhHHHhhccHHHHHHHHHHHH-------HHHHHHHH-------HH
Confidence 345555666655333333344444443 77666655 4444444444 44444455 55
Q ss_pred HHHHHHHHhhHHHHHHHHHHHh
Q 006984 501 KNKQSFMRDKIKILESSLNRAN 522 (623)
Q Consensus 501 eEEL~~l~~~lksLE~sl~kA~ 522 (623)
+.....++.+++.++.++.++-
T Consensus 91 ekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 91 EKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666666665543
No 240
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=45.02 E-value=3.2e+02 Score=27.08 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHH
Q 006984 346 LEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAE 396 (623)
Q Consensus 346 LE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAe 396 (623)
|+.-+++.+.++..++..+...-+....+++.+..++..+.+=+.|+..|.
T Consensus 28 l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al 78 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELAL 78 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433333444555555555555555555555543
No 241
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=44.90 E-value=3.8e+02 Score=27.87 Aligned_cols=49 Identities=20% Similarity=0.401 Sum_probs=39.4
Q ss_pred hHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHH
Q 006984 322 DMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLN 372 (623)
Q Consensus 322 ~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVa 372 (623)
...|..+.+- +.+..|.+.|..+|..|+.+...+..|+.....+.+.-+
T Consensus 22 s~~lNd~TGY--s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs 70 (207)
T PF05546_consen 22 SQALNDVTGY--SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRS 70 (207)
T ss_pred HHHHHhccCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666664 889999999999999999999999999988877644333
No 242
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=44.84 E-value=4.2e+02 Score=28.38 Aligned_cols=117 Identities=23% Similarity=0.266 Sum_probs=83.4
Q ss_pred Hhhhhhh-hHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccc
Q 006984 222 KSLAREL-DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGS 300 (623)
Q Consensus 222 kSla~el-dLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~~s 300 (623)
++||+|+ +....|.+.=..|-+++......-. |-++-.-.-..|+...+.+...++.++-.|+..
T Consensus 123 R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~--------------r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l 188 (267)
T PF10234_consen 123 RQLASEITQRGASLYDLLGKEVELREERQRALA--------------RPLELNEIEKALKEAIKAVQQQLQQTQQQLNNL 188 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHc--------------CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578876 5677888877766666655432222 555555555678888899999999999999999
Q ss_pred hhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 006984 301 LQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIR 356 (623)
Q Consensus 301 ~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQ 356 (623)
...|..|-.|++.-.-.|+.-..-|+.|.+-++ .-.+-...+|.+|...-..
T Consensus 189 ~~de~~Le~KIekkk~ELER~qKRL~sLq~vRP----AfmdEyEklE~EL~~lY~~ 240 (267)
T PF10234_consen 189 ASDEANLEAKIEKKKQELERNQKRLQSLQSVRP----AFMDEYEKLEEELQKLYEI 240 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh----HHHHHHHHHHHHHHHHHHH
Confidence 999999999998888888877777777777754 3334444455555544333
No 243
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=44.53 E-value=40 Score=36.82 Aligned_cols=105 Identities=14% Similarity=0.202 Sum_probs=9.4
Q ss_pred HHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHH
Q 006984 264 VVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKV 343 (623)
Q Consensus 264 ~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~~s~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKv 343 (623)
.+++|+..=|.+..-|.+....+..++..++.+|+....-=++++.-|.... ..+..|+..+
T Consensus 32 ~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLs------------------stV~~lq~Sl 93 (326)
T PF04582_consen 32 PIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLS------------------STVTSLQSSL 93 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHH
Confidence 3555555555555556555555555555555555544333333333332222 3333444444
Q ss_pred HHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHH
Q 006984 344 KSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLY 386 (623)
Q Consensus 344 ksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~ 386 (623)
..++..+......+......+-..+..|++|...|-.||.+|.
T Consensus 94 ~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVS 136 (326)
T PF04582_consen 94 SSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVS 136 (326)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhh
Confidence 4444444443333333333333334445555555555555543
No 244
>PRK02119 hypothetical protein; Provisional
Probab=44.47 E-value=98 Score=26.75 Aligned_cols=48 Identities=10% Similarity=0.087 Sum_probs=40.7
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006984 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (623)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (623)
-+-+++.|.-|-+++|..|...+=+-+.+|..++...+.|.+.++...
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356778888899999999999999999999999999999988887754
No 245
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=44.36 E-value=32 Score=37.58 Aligned_cols=50 Identities=20% Similarity=0.365 Sum_probs=31.9
Q ss_pred HhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCC
Q 006984 372 NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNND 421 (623)
Q Consensus 372 aaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~ 421 (623)
.+|..+|..+++.++..|.|+.........+.+-...+...+..|++++-
T Consensus 140 ~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsR 189 (370)
T PF02994_consen 140 ESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSR 189 (370)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35777788887777777777777777666666666666666666666543
No 246
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=44.01 E-value=3.8e+02 Score=27.61 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=20.2
Q ss_pred hhhhhhhhhhccchhhHHHHHHHHHhh----HHHHHHHHHHHhHHHHhh
Q 006984 484 ESVEEQCIVLSEDNFELKNKQSFMRDK----IKILESSLNRANIEKAAS 528 (623)
Q Consensus 484 E~aEsKc~~Lse~N~ELeEEL~~l~~~----lksLE~sl~kA~q~k~~t 528 (623)
.+|+.|+- .-|+|+..++++ +..|.+++.++.-+-.+.
T Consensus 139 ~hAeekL~-------~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SL 180 (207)
T PF05010_consen 139 AHAEEKLE-------KANEEIAQVRSKHQAELLALQASLKKEEMKVQSL 180 (207)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34556665 455555555544 445666665554444443
No 247
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=43.83 E-value=5.7e+02 Score=29.58 Aligned_cols=102 Identities=19% Similarity=0.229 Sum_probs=49.1
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHh
Q 006984 394 SAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLK 473 (623)
Q Consensus 394 tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme~vIEdLk 473 (623)
.+..|+..+.++-.+|..+-+.|-++- ||..-+....| .+...+.-- .-+.+.+.+...=|++.-
T Consensus 96 ~~~ek~~~l~~~~~~L~~~F~~LA~~i---------le~k~~~f~~~---~~~~l~~ll---~Pl~e~l~~f~~~v~~~~ 160 (475)
T PRK10361 96 HADDKIRQMINSEQRLSEQFENLANRI---------FEHSNRRVDEQ---NRQSLNSLL---SPLREQLDGFRRQVQDSF 160 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH---HHHHHHHHH---hhHHHHHHHHHHHHHHHH
Confidence 456677788888888887777666642 22222211100 000000000 001222333333333222
Q ss_pred hhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHH
Q 006984 474 SKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKI 513 (623)
Q Consensus 474 ~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lks 513 (623)
.+ +++.| -+...++.-|.+.|..+..|-..+.+-||.
T Consensus 161 ~~--~~~~~-~~L~~qi~~L~~~n~~i~~ea~nLt~ALkg 197 (475)
T PRK10361 161 GK--EAQER-HTLAHEIRNLQQLNAQMAQEAINLTRALKG 197 (475)
T ss_pred HH--HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 22 23333 234445777788888888887777766653
No 248
>PF13514 AAA_27: AAA domain
Probab=43.67 E-value=7.4e+02 Score=30.89 Aligned_cols=337 Identities=18% Similarity=0.225 Sum_probs=0.0
Q ss_pred ccchHHHHHHHHHHHHhhhhhhhHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHH-------------------H
Q 006984 207 MKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVW-------------------G 267 (623)
Q Consensus 207 mqt~eqqR~iLrMLekSla~eldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~-------------------e 267 (623)
|+.+++.-..++--=+.+|+=-.|...+...+..-..+..++...+.....+..+-...| .
T Consensus 532 ~~~aD~laD~~~~~a~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~g~p~~p~~~~~Wl~~~~ 611 (1111)
T PF13514_consen 532 VREADELADRRLREAERAARLAQLRARLEEARARLARAQARLAAAEAALAALEAAWAALWAAAGLPLSPAEMRDWLARRE 611 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q ss_pred HHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhc---hhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHH
Q 006984 268 RFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQR---ESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVK 344 (623)
Q Consensus 268 r~~EAENa~EvL~g~skel~gkLq~~qf~L~~s~~R---Esel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvk 344 (623)
+.+++--...-.......+..++....-.|.+.... -.+|..-+......+..-.....+...- ..++..+...+.
T Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~ 690 (1111)
T PF13514_consen 612 AALEAAEELRAARAELEALRARRAAARAALAAALAALGPAEELAALLEEAEALLEEWEQAAARREQL-EEELQQLEQELE 690 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhHhhHhhh----------------------------HHHHHhHHHHHHHHHhHHHhhhhhHHHHH
Q 006984 345 SLEEQLKESEIRLQNANACFQTS----------------------------QEQLNEMDNFIESLKESLYGAESRAESAE 396 (623)
Q Consensus 345 sLE~qLdes~eQL~~A~aklEes----------------------------E~EVaaLerrIelLKEel~rAEsRa~tAe 396 (623)
..+..+......+.......... ..++..+..+|+.++.++..-+.++....
T Consensus 691 ~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~ 770 (1111)
T PF13514_consen 691 EAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEALEALELLEELREALAEIRELRRRIEQMEADLAAFEEQVAALA 770 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH------HhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHH--
Q 006984 397 EKVTQ------LTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETL-- 468 (623)
Q Consensus 397 sKle~------LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme~v-- 468 (623)
..+.. ...+...+...++.-+... .+...+..++...+.+++++..-...... .+..+-..-.+
T Consensus 771 ~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~----~~~~~l~~~~~~~~~~~~~~~~~l~~~~~----~l~~L~~~a~~~~ 842 (1111)
T PF13514_consen 771 ERLGPDLPEDPAEEALEALRARLEEAREAQ----EERERLQEQLEELEEELEQAEEELEELEA----ELAELLEQAGVED 842 (1111)
T ss_pred HHcCcccccCcHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhccCCC
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHh---hHHHHHHhHHHHHHHHHH
Q 006984 469 IEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAA---SAKEVNHRTKLMMEMVMQ 545 (623)
Q Consensus 469 IEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~---tlKeae~Rak~aE~lV~K 545 (623)
.++|...+.++.. .. +|..++..+...+...-....-..-...- ...++..+..-+..-+..
T Consensus 843 ~e~l~~~~~~~~~--------~~-------~l~~~~~~~~~~l~~~~~~~~~~~l~~e~~~~d~~~l~~~l~~l~~~l~~ 907 (1111)
T PF13514_consen 843 EEELREAEERAEE--------RR-------ELREELEDLERQLERQADGLDLEELEEELEELDPDELEAELEELEEELEE 907 (1111)
T ss_pred HHHHHHHHHHHHH--------HH-------HHHHHHHHHHHHHHhhcCcccHHHHHHHhhccCHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhhHH
Q 006984 546 LATQRELIQKQVYSLTSENKLL 567 (623)
Q Consensus 546 L~~ErdrLe~ql~s~keenK~L 567 (623)
|..+++.|..++.....+...|
T Consensus 908 l~~~~~~l~~~~~~~~~~l~~l 929 (1111)
T PF13514_consen 908 LEEELEELQEERAELEQELEAL 929 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 249
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=43.46 E-value=2.6e+02 Score=30.12 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHhhh-------HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhH
Q 006984 338 TMKEKVKSLEEQLKESEIRLQNANACFQTS-------QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNL 407 (623)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEes-------E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNd 407 (623)
.+.+.+..||.+..+...++.......+.. -.+.+.+......+.++..-...+...+..++..|.+||.
T Consensus 61 ~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv 137 (314)
T PF04111_consen 61 ELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNV 137 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 333444444444444444444333333222 3355666777777777777777777777777777777764
No 250
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=42.61 E-value=3.1e+02 Score=26.24 Aligned_cols=69 Identities=14% Similarity=0.165 Sum_probs=51.7
Q ss_pred HHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHhhhHHHHHHhhc
Q 006984 506 FMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYS---------LTSENKLLVEKLQYS 574 (623)
Q Consensus 506 ~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s---------~keenK~L~ekld~t 574 (623)
.+.+.+++||+..+...+.++..-+.-..+++.++.-+.++..-...++..+.- -+.+|+.|..+++..
T Consensus 24 ~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~ 101 (126)
T PF09403_consen 24 SVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDL 101 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 577889999999999999998888888888888888888876665555555433 345677776666644
No 251
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=42.43 E-value=3.7e+02 Score=27.07 Aligned_cols=77 Identities=21% Similarity=0.335 Sum_probs=36.0
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHH
Q 006984 469 IEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLAT 548 (623)
Q Consensus 469 IEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ 548 (623)
+..++.++...+.|.......+- .+.+++...+.++..+..++......=..+..-...+.+...+....+..
T Consensus 58 ~~~~~~~~~~~~~r~~~l~~~i~-------~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 130 (302)
T PF10186_consen 58 IQQLKREIEELRERLERLRERIE-------RLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEE 130 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555 55555555555555555555444433222222223333444444444433
Q ss_pred HHHH
Q 006984 549 QREL 552 (623)
Q Consensus 549 Erdr 552 (623)
...+
T Consensus 131 ~~~~ 134 (302)
T PF10186_consen 131 RKQR 134 (302)
T ss_pred HHHH
Confidence 3333
No 252
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=41.96 E-value=4.2e+02 Score=27.56 Aligned_cols=52 Identities=17% Similarity=0.226 Sum_probs=48.0
Q ss_pred HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcC
Q 006984 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN 419 (623)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesr 419 (623)
=+.|..|.+.|..++..+..+..++..|-.....+...=..+.|+++.|=.|
T Consensus 31 Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqR 82 (207)
T PF05546_consen 31 YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQR 82 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4578899999999999999999999999999999999999999999999888
No 253
>PRK04406 hypothetical protein; Provisional
Probab=41.93 E-value=1.7e+02 Score=25.48 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=41.0
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006984 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (623)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (623)
.+-+++.|.-|-+++|..|...+=+-+.+|..+....+.|.+.++...
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 466788888999999999999999999999999999999888887654
No 254
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=41.41 E-value=1.9e+02 Score=23.45 Aligned_cols=80 Identities=25% Similarity=0.353 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhh----hHHHHHH
Q 006984 337 LTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT----NLELSEE 412 (623)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseT----NdELere 412 (623)
......+..+..++......|..... ......+..+-+..+.++.++..-+.++......+..+..+ +..+...
T Consensus 4 ~~f~~~~~~l~~Wl~~~e~~l~~~~~--~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~ 81 (105)
T PF00435_consen 4 QQFQQEADELLDWLQETEAKLSSSEP--GSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEK 81 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCTH--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 45566677777777777776633222 22345566666677777777777777777777777777544 3444444
Q ss_pred hhhhhc
Q 006984 413 INFLKG 418 (623)
Q Consensus 413 lk~Les 418 (623)
+..|..
T Consensus 82 ~~~l~~ 87 (105)
T PF00435_consen 82 LEELNQ 87 (105)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 255
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=41.29 E-value=5.1e+02 Score=28.32 Aligned_cols=94 Identities=21% Similarity=0.265 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHh
Q 006984 394 SAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLK 473 (623)
Q Consensus 394 tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme~vIEdLk 473 (623)
.|..|+.++..-++-|+++.+-=. + .+++||.-|. ..+.-++.-.- .|..++|=..-+-+.
T Consensus 15 ~aLqKIqelE~QldkLkKE~qQrQ---f----QleSlEAaLq-------KQKqK~e~ek~----e~s~LkREnq~l~e~- 75 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQQRQ---F----QLESLEAALQ-------KQKQKVEEEKN----EYSALKRENQSLMES- 75 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---H----hHHHHHHHHH-------HHHHHHHHHhh----hhhhhhhhhhhHHHH-
Confidence 466777777777777777665211 1 2344444333 23333333332 356666554333322
Q ss_pred hhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHh
Q 006984 474 SKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRAN 522 (623)
Q Consensus 474 ~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~ 522 (623)
|--|-.++-.|.-+|.+-.+.+.+||.++..+.
T Consensus 76 ----------------c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~K 108 (307)
T PF10481_consen 76 ----------------CENLEKTRQKLSHDLQVKESQVNFLEGQLNSCK 108 (307)
T ss_pred ----------------HHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHH
Confidence 333333344677888888888888888887654
No 256
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=41.16 E-value=4e+02 Score=27.05 Aligned_cols=147 Identities=16% Similarity=0.203 Sum_probs=86.2
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhch-hHHHHHHHhHHHHHhh
Q 006984 242 EQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRE-SELKSKLGDFIEQLKA 320 (623)
Q Consensus 242 eeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~~s~~RE-sel~sKL~~~~eqL~~ 320 (623)
.+|..+|..+....-........+..++.+..+..+-+....-+...+++.+...|++....- +.|..=....+
T Consensus 81 ~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l----- 155 (240)
T PF12795_consen 81 EELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLL----- 155 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHH-----
Confidence 344444544555555566677778888888899999999999999999999999999842222 22211111111
Q ss_pred hhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHH
Q 006984 321 KDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVT 400 (623)
Q Consensus 321 k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle 400 (623)
..|...|.-++.-++..+....-...-++...+.....+..++..++.|.+-+. .-|...|+...+
T Consensus 156 ------------~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln--~~R~~eae~~~~ 221 (240)
T PF12795_consen 156 ------------QAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLN--QKRRQEAEQAVE 221 (240)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 244445555566666555554444444444444445555555666666655553 234555555555
Q ss_pred HHhhhhH
Q 006984 401 QLTDTNL 407 (623)
Q Consensus 401 ~LseTNd 407 (623)
.+.....
T Consensus 222 ~a~~~~~ 228 (240)
T PF12795_consen 222 EAEQLQE 228 (240)
T ss_pred HHHHHHH
Confidence 5444433
No 257
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=40.88 E-value=65 Score=28.19 Aligned_cols=41 Identities=12% Similarity=0.284 Sum_probs=30.0
Q ss_pred HHHHHHhhhhhh---hhHHhHHHHHHHHHhhhhcccceeccccc
Q 006984 95 ALVYDLLFGILD---SELREVERLLDTIHVEIVNVHHKISSCKH 135 (623)
Q Consensus 95 a~efDlL~gild---sEv~ele~~~~~lq~~I~~~~~~~~s~~~ 135 (623)
+.-||+++.|-+ ...+.++.-++.|..-|..|+.-|.+-..
T Consensus 6 P~i~~~l~~~~~d~~~~~kd~~~~~~~lk~Klq~ar~~i~~lpg 49 (83)
T PF07544_consen 6 PLIFDILHQISKDPPLSSKDLDTATGSLKHKLQKARAAIRELPG 49 (83)
T ss_pred chHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 456788887765 36788888888888888888776655444
No 258
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=40.76 E-value=86 Score=33.66 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=18.5
Q ss_pred hhhhhhHhhHHHHHHHHHHHHHhhHhhhh
Q 006984 148 KKLHDCEGSLKESQEHVSELKMQSAKFQR 176 (623)
Q Consensus 148 ~kL~~~~~sLkq~~e~~~ei~~qsa~f~r 176 (623)
.||.++...+..|+.++...+-+...-++
T Consensus 8 ~KL~et~~~V~~m~~~L~~~~~~L~~k~~ 36 (344)
T PF12777_consen 8 DKLKETEEQVEEMQEELEEKQPELEEKQK 36 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777666666666666555443
No 259
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=40.68 E-value=8.9e+02 Score=30.91 Aligned_cols=63 Identities=22% Similarity=0.194 Sum_probs=30.9
Q ss_pred hHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHH---HHHHHhccchHHHHhhhhHHHHhhhh
Q 006984 229 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVV---WGRFLEAENSAEVLMGISKEMLGRFQ 291 (623)
Q Consensus 229 dLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~---~er~~EAENa~EvL~g~skel~gkLq 291 (623)
|||+|+.-.++--||=-..|-...+|..-||-....+ .+-||---|-+---+|..+.+..+-.
T Consensus 181 dle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~ae 246 (1195)
T KOG4643|consen 181 DLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAE 246 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhh
Confidence 4444544444433333344444455555555444433 23455545555556666666665544
No 260
>PRK10869 recombination and repair protein; Provisional
Probab=40.56 E-value=6.3e+02 Score=29.19 Aligned_cols=19 Identities=16% Similarity=0.149 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHhHHHHhh
Q 006984 510 KIKILESSLNRANIEKAAS 528 (623)
Q Consensus 510 ~lksLE~sl~kA~q~k~~t 528 (623)
+|..+|.-+...+.-+-+|
T Consensus 297 ~l~~ie~Rl~~l~~L~rKy 315 (553)
T PRK10869 297 RLAELEQRLSKQISLARKH 315 (553)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3555666666666666666
No 261
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=40.08 E-value=4.4e+02 Score=27.26 Aligned_cols=101 Identities=14% Similarity=0.218 Sum_probs=58.3
Q ss_pred HHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHH---HHHH------HHHhHHHHhhHHHH
Q 006984 462 IWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL---ESSL------NRANIEKAASAKEV 532 (623)
Q Consensus 462 i~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksL---E~sl------~kA~q~k~~tlKea 532 (623)
...+..=+|-....+.+.-..++..-.|+. .|+.|+.-++..+... .... +.|..........+
T Consensus 61 ~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~-------~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~ 133 (202)
T PF06818_consen 61 LRTKQLELEVCENELQRKKNEAELLREKLG-------QLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDEL 133 (202)
T ss_pred HHHhhHhHHHhHHHHHHHhCHHHHhhhhhh-------hhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccc
Confidence 333333344444666666666667777777 6666666666655544 0111 11111111122345
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006984 533 NHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVE 569 (623)
Q Consensus 533 e~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~e 569 (623)
..-..-++++-..|..+|.+.+.+..+.-.+-+.-.+
T Consensus 134 ~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~e 170 (202)
T PF06818_consen 134 GSLRREVERLRAELQRERQRREEQRSSFEQERRTWQE 170 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5556678888999999999999888876665555433
No 262
>PRK11020 hypothetical protein; Provisional
Probab=39.60 E-value=1.5e+02 Score=28.39 Aligned_cols=67 Identities=16% Similarity=0.197 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHhhcCCCC
Q 006984 500 LKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSEN-KLLVEKLQYSGKSS 578 (623)
Q Consensus 500 LeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keen-K~L~ekld~t~~~~ 578 (623)
+..||..+-++|..+.-++..|..+-+. ..+.|+..|++.|..+|.+++... ..|+.+-+... +.
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~-------------~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l~-~l 68 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDA-------------EKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKLM-KL 68 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cC
Confidence 5678888888888777766666665543 457788888888888888877543 33444433332 44
Q ss_pred ce
Q 006984 579 SA 580 (623)
Q Consensus 579 ~~ 580 (623)
||
T Consensus 69 pF 70 (118)
T PRK11020 69 PF 70 (118)
T ss_pred Cc
Confidence 44
No 263
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=39.57 E-value=3.8e+02 Score=28.84 Aligned_cols=50 Identities=18% Similarity=0.322 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHH
Q 006984 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLK 382 (623)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLK 382 (623)
+.+...+.+.++.++.+-++....|.......+....++.+++.....++
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666555555554444555555555444444
No 264
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=38.68 E-value=7.3e+02 Score=29.35 Aligned_cols=134 Identities=22% Similarity=0.220 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhH----------------HHhhhhhH----
Q 006984 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKES----------------LYGAESRA---- 392 (623)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEe----------------l~rAEsRa---- 392 (623)
-+-+..||.+..+||++++..-.+...-.-.+ .+++++|--. +...++|+
T Consensus 89 lk~nk~Lq~~nesLeEqv~~~~d~vvql~hel----------s~k~ellr~ys~~~ees~~~~v~~~P~~~~~s~S~~~~ 158 (596)
T KOG4360|consen 89 LKANKALQEDNESLEEQVDAPWDRVVQLGHEL----------SRKDELLRGYSAAIEESEAASVCSTPLVSNESRSAFQR 158 (596)
T ss_pred HhhhhhhhhhhhhhHhhhcchHHHHHHhhhhh----------hhhhhhhheeeeccccccccccccCCCccCcchhhHHH
Confidence 45566899999999999887666544333222 1111111100 00011111
Q ss_pred ---HHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcch----hhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhH
Q 006984 393 ---ESAEEKVTQLTDTNLELSEEINFLKGNNDSNTK----KVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDM 465 (623)
Q Consensus 393 ---~tAesKle~LseTNdELerelk~Lesrs~~deE----k~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dm 465 (623)
+.-..|++.+.+-|..+.-+...|+--...-++ -++.+.++|+.++.|.---..-..--..+-+-.|++.+.+
T Consensus 159 ~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skL 238 (596)
T KOG4360|consen 159 ELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKL 238 (596)
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222345555555555555555555544332222 2567788888887543222100000111223357888888
Q ss_pred HHHHHHHhhhh
Q 006984 466 ETLIEDLKSKV 476 (623)
Q Consensus 466 e~vIEdLk~Kl 476 (623)
++.|-|++-|.
T Consensus 239 lsql~d~qkk~ 249 (596)
T KOG4360|consen 239 LSQLVDLQKKI 249 (596)
T ss_pred HHHHHhhHHHH
Confidence 88888877664
No 265
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=38.34 E-value=2.9e+02 Score=27.31 Aligned_cols=100 Identities=18% Similarity=0.222 Sum_probs=45.9
Q ss_pred HHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhh----hHHHHHhHHHHHHHH
Q 006984 306 ELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT----SQEQLNEMDNFIESL 381 (623)
Q Consensus 306 el~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEe----sE~EVaaLerrIelL 381 (623)
.|+-|.-..+|.|+.--+.-+ ..+-|+..|......|+.+...=...-..+...+.+ .+++..+|...|..|
T Consensus 26 ~LmP~VV~vLE~Le~~~~~n~----~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~L 101 (158)
T PF09744_consen 26 GLMPKVVRVLELLESLASRNQ----EHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQL 101 (158)
T ss_pred HHHHHHHHHHHHHHHHHHhhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556555655543211111 023445556666666665554433322333333322 244555666666666
Q ss_pred HhHHHhhhhhHHHHHHHHHHHhhhhHHH
Q 006984 382 KESLYGAESRAESAEEKVTQLTDTNLEL 409 (623)
Q Consensus 382 KEel~rAEsRa~tAesKle~LseTNdEL 409 (623)
++....-+.++.+......-+.+.-.++
T Consensus 102 e~e~r~L~~~~~~~~~q~~rlee~e~~l 129 (158)
T PF09744_consen 102 EEENRQLELKLKNLSDQSSRLEEREAEL 129 (158)
T ss_pred HHHHHHHHHHhhhhhhhccccchhHHHH
Confidence 6655555544444444333333333333
No 266
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=37.74 E-value=2.5e+02 Score=24.30 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006984 335 EVLTMKEKVKSLEEQLKESEIRLQ 358 (623)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~ 358 (623)
-+..|+.+++.+|.+++.+..++.
T Consensus 34 ~IKKLr~~~~e~e~~~~~l~~~~~ 57 (74)
T PF12329_consen 34 TIKKLRAKIKELEKQIKELKKKLE 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555544444443333
No 267
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=37.47 E-value=5.4e+02 Score=27.47 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=40.1
Q ss_pred HHHHHHHhHHHHHhhhhHHHHHhhcC-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHH
Q 006984 306 ELKSKLGDFIEQLKAKDMVLQKLEST-----KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIES 380 (623)
Q Consensus 306 el~sKL~~~~eqL~~k~~~lekl~~s-----~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIel 380 (623)
-+...+.....+|..-+..|...... .+........-+..|+.++.+.+.++..+....-...=.|..+..+|..
T Consensus 174 fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~ 253 (362)
T TIGR01010 174 FAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKS 253 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHH
Confidence 44455555555555555555544443 2344445556666666666666666655443322212234444444444
Q ss_pred HHhHHHh
Q 006984 381 LKESLYG 387 (623)
Q Consensus 381 LKEel~r 387 (623)
|+..+..
T Consensus 254 l~~~i~~ 260 (362)
T TIGR01010 254 LRKQIDE 260 (362)
T ss_pred HHHHHHH
Confidence 4444433
No 268
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=36.96 E-value=3.4e+02 Score=31.71 Aligned_cols=92 Identities=26% Similarity=0.299 Sum_probs=54.2
Q ss_pred cccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh------
Q 006984 297 LNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST---KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------ 367 (623)
Q Consensus 297 L~~s~~REsel~sKL~~~~eqL~~k~~~lekl~~s---~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes------ 367 (623)
...-..||.-|++--..-+.+|-.+ ++..++. =-.|...|++++...|.+.+....+|..++.+.-..
T Consensus 404 ~~E~esRE~LIk~~Y~~RI~eLt~q---lQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~T 480 (518)
T PF10212_consen 404 SPEEESREQLIKSYYMSRIEELTSQ---LQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELET 480 (518)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678877777666666666543 2222221 146788888888877777776666666655543221
Q ss_pred -----HHHHHhHHHHHHHHHhHHHhhhhh
Q 006984 368 -----QEQLNEMDNFIESLKESLYGAESR 391 (623)
Q Consensus 368 -----E~EVaaLerrIelLKEel~rAEsR 391 (623)
+.+++.|.--+-.|-+++.+-...
T Consensus 481 Tr~NYE~QLs~MSEHLasmNeqL~~Q~ee 509 (518)
T PF10212_consen 481 TRRNYEEQLSMMSEHLASMNEQLAKQREE 509 (518)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666655555555555554443
No 269
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=36.90 E-value=2.3e+02 Score=24.05 Aligned_cols=39 Identities=31% Similarity=0.374 Sum_probs=21.5
Q ss_pred HHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhh
Q 006984 379 ESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 417 (623)
Q Consensus 379 elLKEel~rAEsRa~tAesKle~LseTNdELerelk~Le 417 (623)
+.+.+++.+..+--.+++.++..+..-|.+|..+++-|+
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~ 52 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLK 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555566666666666655555443
No 270
>PRK15396 murein lipoprotein; Provisional
Probab=36.77 E-value=1.3e+02 Score=26.71 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=29.2
Q ss_pred HHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHH
Q 006984 352 ESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEE 397 (623)
Q Consensus 352 es~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAes 397 (623)
....+.+..+++.+...+.+.++..-++.-+++..||-.|+++--.
T Consensus 29 ~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~~ 74 (78)
T PRK15396 29 QLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQAT 74 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444445555566667777777788888888888876443
No 271
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=36.51 E-value=2.8e+02 Score=23.89 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006984 333 NSEVLTMKEKVKSLEEQLKESEIRLQN 359 (623)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~ 359 (623)
+.++.+|+.++.++..++..+..-+..
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~ 30 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKR 30 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777776666666554433
No 272
>PRK11519 tyrosine kinase; Provisional
Probab=36.26 E-value=6e+02 Score=30.12 Aligned_cols=38 Identities=24% Similarity=0.198 Sum_probs=26.4
Q ss_pred HHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhch
Q 006984 267 GRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRE 304 (623)
Q Consensus 267 er~~EAENa~EvL~g~skel~gkLq~~qf~L~~s~~RE 304 (623)
.|.-.+.++.+.|..-...+..+|+..|..|.....+.
T Consensus 260 ~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~ 297 (719)
T PRK11519 260 RKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDK 297 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35556677888888888887777777777776554443
No 273
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=36.14 E-value=9.3e+02 Score=29.83 Aligned_cols=126 Identities=21% Similarity=0.277 Sum_probs=79.2
Q ss_pred HHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhh--------h--HHHHHhhcCChhHHHHHHHHHHH
Q 006984 276 AEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAK--------D--MVLQKLESTKNSEVLTMKEKVKS 345 (623)
Q Consensus 276 ~EvL~g~skel~gkLq~~qf~L~~s~~REsel~sKL~~~~eqL~~k--------~--~~lekl~~s~esEv~sLqkKvks 345 (623)
+-.|+|++|.|+.--.-.++. .|..-++.|+-.|-+- + .+++-| -+|...|+.+++.
T Consensus 339 ~KYLLgELkaLVaeq~DsE~q---------RLitEvE~cislLPav~g~tniq~EIALA~Qpl----rsENaqLrRrLri 405 (861)
T PF15254_consen 339 LKYLLGELKALVAEQEDSEVQ---------RLITEVEACISLLPAVSGSTNIQVEIALAMQPL----RSENAQLRRRLRI 405 (861)
T ss_pred HHHHHHHHHHHHhccchHHHH---------HHHHHHHHHHHhhhhhhccccchhhhHhhhhhh----hhhhHHHHHHHHH
Confidence 345677777776543333321 2555566666555431 2 222222 4678888889888
Q ss_pred HHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 006984 346 LEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 416 (623)
Q Consensus 346 LE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~L 416 (623)
|..+|++-+ ....+... ..+-=|+.+|...+-.|.-.|..+..-.+.-..|.++|.+.++-...+-+-|
T Consensus 406 lnqqlreqe-~~~k~~~~-~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~ 474 (861)
T PF15254_consen 406 LNQQLREQE-KAEKTSGS-QDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRL 474 (861)
T ss_pred HHHHHHHHH-hhcccCCC-cccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 888888722 22211111 1133488899999999999998888888888888888888886665554433
No 274
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=35.89 E-value=5.3e+02 Score=26.91 Aligned_cols=45 Identities=20% Similarity=0.303 Sum_probs=38.1
Q ss_pred HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 006984 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (623)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELere 412 (623)
.+.|.+|++.|...+.+-.+....+......+.-|-...+++-++
T Consensus 59 ~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 59 NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999888888888887777777777666
No 275
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=35.75 E-value=5.9e+02 Score=27.46 Aligned_cols=53 Identities=19% Similarity=0.340 Sum_probs=27.4
Q ss_pred HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCC
Q 006984 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNN 420 (623)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs 420 (623)
++++...+-.+.+++..+...-.|+..++.+-..++++-.-+.....-+.+.+
T Consensus 213 ~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~~s 265 (269)
T PF05278_consen 213 EEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHGKS 265 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 33333333334444444444445555555666666666665655555555554
No 276
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=35.70 E-value=8.9e+02 Score=29.48 Aligned_cols=63 Identities=14% Similarity=0.248 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHH
Q 006984 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAE 396 (623)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAe 396 (623)
.+.-.+|+++.-||.+-+....|..-.....++.-++|.+|+-.|+.-..++--+|+-++.-.
T Consensus 104 ~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqel 166 (861)
T KOG1899|consen 104 PEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQEL 166 (861)
T ss_pred CcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHH
Confidence 667789999999999999999998888888888888999999999999999988888777643
No 277
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=35.52 E-value=5.3e+02 Score=26.80 Aligned_cols=63 Identities=22% Similarity=0.247 Sum_probs=46.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHH
Q 006984 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAES 394 (623)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~t 394 (623)
.+.=+...-.+.++||+++.....++..+....+.....+..|+++|..++....-..-|...
T Consensus 83 ~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~ 145 (225)
T COG1842 83 NEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAA 145 (225)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566677788888888888888888888887777778888888888877765544444333
No 278
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=35.28 E-value=4.7e+02 Score=26.15 Aligned_cols=51 Identities=20% Similarity=0.328 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhH
Q 006984 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKES 384 (623)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEe 384 (623)
.++..+.+++..-|..|+.-...|..-...++..+.++......+...+.+
T Consensus 78 ~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e 128 (201)
T PF12072_consen 78 KELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEE 128 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333333333333333333333
No 279
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=34.99 E-value=8.7e+02 Score=29.18 Aligned_cols=136 Identities=13% Similarity=0.140 Sum_probs=71.4
Q ss_pred hhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 006984 479 AESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVY 558 (623)
Q Consensus 479 AE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~ 558 (623)
.+......+..|...-+. +..+.+.+..|...+..++......-++...-...+..++..|+.....|.+..
T Consensus 225 ~~~~~~~l~~~~~~~~~~-------i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~- 296 (670)
T KOG0239|consen 225 LRRNIKPLEGLESTIKKK-------IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK- 296 (670)
T ss_pred HHHhhhhhhhhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 333344455555533333 444444444444444444444444433333333344444777888888888877
Q ss_pred HHHHhhhHHHHHHhhcCCCC-----------------ceeeeccC----------CCCCcc----eeeccCCCcccchhc
Q 006984 559 SLTSENKLLVEKLQYSGKSS-----------------SATMYNAG----------DTDDKE----LLINPTNNLAGATVK 607 (623)
Q Consensus 559 s~keenK~L~ekld~t~~~~-----------------~~~~~~~~----------~~~~~~----~~~~~~~~~~~~~~~ 607 (623)
.+...++.|..++.+.+-+- ...+..++ +..++. |-|.+--...++|..
T Consensus 297 ~e~~~r~kL~N~i~eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~ 376 (670)
T KOG0239|consen 297 KEKEERRKLHNEILELKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDD 376 (670)
T ss_pred HHHHHHHHHHHHHHHhhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHH
Confidence 77777777766655541111 11111111 112222 666666666777777
Q ss_pred chHHHHHHHHHhhcC
Q 006984 608 TSEDAVSLMKSVQAG 622 (623)
Q Consensus 608 ~~~~~~~~~~~~~~~ 622 (623)
-|.|+=-+..|+--|
T Consensus 377 VF~e~~~lv~S~lDG 391 (670)
T KOG0239|consen 377 VFEEVSPLVQSALDG 391 (670)
T ss_pred HHHHHHHHHHHHhcC
Confidence 888887777776544
No 280
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=34.96 E-value=6.3e+02 Score=28.52 Aligned_cols=52 Identities=35% Similarity=0.433 Sum_probs=29.8
Q ss_pred hhhhHHHHHHHHHHHHHHh--------hhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhh
Q 006984 426 KVGILENQLRDLEIQLQQA--------KVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAE 480 (623)
Q Consensus 426 k~~~LE~QLKEa~~QLqhA--------~asaEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE 480 (623)
|...||.||-+. +||+++ -+..|+.-.=|+ |+-++|+.-+||-.+++++|-|
T Consensus 259 R~erLEeqlNd~-~elHq~Ei~~LKqeLa~~EEK~~Yqs--~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 259 RYERLEEQLNDL-TELHQNEIYNLKQELASMEEKMAYQS--YERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHH
Confidence 556666666665 344333 344554444344 6667777777776666666555
No 281
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=34.53 E-value=1e+03 Score=29.76 Aligned_cols=21 Identities=38% Similarity=0.366 Sum_probs=9.8
Q ss_pred hhhhhHHHHHHHHHHHHHHhh
Q 006984 425 KKVGILENQLRDLEIQLQQAK 445 (623)
Q Consensus 425 Ek~~~LE~QLKEa~~QLqhA~ 445 (623)
+.+..|..++...+..+..+.
T Consensus 777 ~~~~~l~~~i~~~~~~~~~~~ 797 (1047)
T PRK10246 777 ETLTQLEQLKQNLENQRQQAQ 797 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555554433333
No 282
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=34.23 E-value=94 Score=26.09 Aligned_cols=38 Identities=16% Similarity=0.313 Sum_probs=28.3
Q ss_pred HHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 006984 377 FIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (623)
Q Consensus 377 rIelLKEel~rAEsRa~tAesKle~LseTNdELerelk 414 (623)
||.+|+.++.+-++-..+....+..++++.+.+++-.+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777777777777777777665
No 283
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=34.21 E-value=6.3e+02 Score=27.26 Aligned_cols=76 Identities=18% Similarity=0.217 Sum_probs=50.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHH
Q 006984 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (623)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELer 411 (623)
|++-+..|.+|...+..+.+...-++....- ....+.....-+..++.++..--..-++-|-+|...|-.+..
T Consensus 20 ~eeK~~~L~kk~~ell~e~k~~~k~~~~~~K-------k~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lke 92 (309)
T PF09728_consen 20 PEEKLEALCKKYAELLEEMKRLQKQLKKLQK-------KQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKE 92 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888888888777776665554433 333455555666666667766666667777777777777776
Q ss_pred Hhh
Q 006984 412 EIN 414 (623)
Q Consensus 412 elk 414 (623)
+.+
T Consensus 93 E~~ 95 (309)
T PF09728_consen 93 ESK 95 (309)
T ss_pred HHH
Confidence 655
No 284
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=34.08 E-value=8.7e+02 Score=28.88 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=28.7
Q ss_pred HHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhh
Q 006984 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTN 406 (623)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTN 406 (623)
......+.++-|.+.+...+.++..|+.++...-..|
T Consensus 261 k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 261 QAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4446677788888888888888888888887776655
No 285
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=34.01 E-value=8.1e+02 Score=28.50 Aligned_cols=40 Identities=20% Similarity=0.250 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006984 536 TKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (623)
Q Consensus 536 ak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (623)
++||.-+-..|..=|-.=+.+---++++|+.|...|..|-
T Consensus 384 ~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTA 423 (488)
T PF06548_consen 384 SRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTA 423 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHH
Confidence 4566555554433332233455667899999999998883
No 286
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=33.73 E-value=3.9e+02 Score=30.17 Aligned_cols=86 Identities=19% Similarity=0.217 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhH------------------HHHHhHHHHHHHHHhHHHhhhhhHHH
Q 006984 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQ------------------EQLNEMDNFIESLKESLYGAESRAES 394 (623)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE------------------~EVaaLerrIelLKEel~rAEsRa~t 394 (623)
.+++..|++++..++.++...+.++..+.+.+.-.+ ..++.+.....-+.+.+...-.+...
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDRE 149 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777777776655544432110 02334445555555555555555555
Q ss_pred HHHHHHHHhhhhHHHHHHhhhhhc
Q 006984 395 AEEKVTQLTDTNLELSEEINFLKG 418 (623)
Q Consensus 395 AesKle~LseTNdELerelk~Les 418 (623)
+..++..+.+.-..+.+++..|.+
T Consensus 150 ~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 150 AERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 555555555555555555555544
No 287
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=33.56 E-value=3.5e+02 Score=25.91 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=12.7
Q ss_pred HHHhhhhHHhhhcccchhc
Q 006984 285 EMLGRFQIVQFNLNGSLQR 303 (623)
Q Consensus 285 el~gkLq~~qf~L~~s~~R 303 (623)
..+.++|..|..|.....+
T Consensus 10 ~~l~q~QqLq~ql~~~~~q 28 (119)
T COG1382 10 AQLAQLQQLQQQLQKVILQ 28 (119)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556777777777766554
No 288
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=33.43 E-value=8.2e+02 Score=28.39 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006984 333 NSEVLTMKEKVKSLEEQLKESEIRLQNA 360 (623)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A 360 (623)
.-|+..|+.++.-||+++++.+..-..+
T Consensus 249 kqEnlqLvhR~h~LEEq~reqElraeE~ 276 (502)
T KOG0982|consen 249 KQENLQLVHRYHMLEEQRREQELRAEES 276 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 4688888899999999988877654443
No 289
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=33.36 E-value=7e+02 Score=27.61 Aligned_cols=76 Identities=18% Similarity=0.241 Sum_probs=36.1
Q ss_pred HHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHH
Q 006984 353 SEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILEN 432 (623)
Q Consensus 353 s~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~ 432 (623)
|...+..|++.+.+++..+..+...+...+ .....+..+ .+..+..++.|-.. |-.++...-+.++..-.
T Consensus 89 y~~al~qAea~la~a~~~~~~~~a~~~~~~-------A~i~~a~a~--~l~~a~~~~~R~~~-L~~~g~vs~~~~~~a~~ 158 (352)
T COG1566 89 YRAALEQAEAALAAAEAQLRNLRAQLASAQ-------ALIAQAEAQ--DLDQAQNELERRAE-LAQRGVVSREELDRARA 158 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH--HHHHHHHHHHHHHH-HHhcCcccHHHHHHHHH
Confidence 444555555555555444444444444444 444444443 55556666666544 33333333344444444
Q ss_pred HHHHHH
Q 006984 433 QLRDLE 438 (623)
Q Consensus 433 QLKEa~ 438 (623)
.+..++
T Consensus 159 a~~~A~ 164 (352)
T COG1566 159 ALQAAE 164 (352)
T ss_pred HHHHHH
Confidence 444443
No 290
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=33.36 E-value=6.6e+02 Score=28.57 Aligned_cols=31 Identities=32% Similarity=0.521 Sum_probs=23.5
Q ss_pred hHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhh
Q 006984 448 SEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESK 482 (623)
Q Consensus 448 aEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~R 482 (623)
.+.++. +...|.|+..+||+|+.+|..---|
T Consensus 212 ~~~sd~----Ll~kVdDLQD~VE~LRkDV~~RgvR 242 (424)
T PF03915_consen 212 SEESDR----LLTKVDDLQDLVEDLRKDVVQRGVR 242 (424)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 346677 7889999999999999998765543
No 291
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=33.08 E-value=8.9e+02 Score=28.68 Aligned_cols=39 Identities=26% Similarity=0.327 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcc
Q 006984 260 EAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLN 298 (623)
Q Consensus 260 E~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~ 298 (623)
+.....|.+|-.+.+..+-++.-..++..|++-++|.++
T Consensus 157 ~~~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~ 195 (557)
T COG0497 157 EAYQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLE 195 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667899999999999999999999999988888764
No 292
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=32.32 E-value=3.2e+02 Score=32.66 Aligned_cols=33 Identities=15% Similarity=0.064 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006984 543 VMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (623)
Q Consensus 543 V~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (623)
+..+..++++|+..|...+.+...|..+|.++.
T Consensus 476 i~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 476 IRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666666655555553
No 293
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=32.18 E-value=2.2e+02 Score=24.04 Aligned_cols=46 Identities=20% Similarity=0.408 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHh
Q 006984 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKE 383 (623)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE 383 (623)
.+++|+..+|..++................+..+..++..|..+++
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666554444333333333334444455555554444
No 294
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=31.82 E-value=71 Score=30.56 Aligned_cols=81 Identities=19% Similarity=0.306 Sum_probs=21.7
Q ss_pred hhHHhHHHHHHHHHhhhhcccceeccccc---hhhHHHH--HHHhHhhhhhhH--hhHHHH-----HHHHHHHHH---hh
Q 006984 107 SELREVERLLDTIHVEIVNVHHKISSCKH---LREVFTI--MEKMEKKLHDCE--GSLKES-----QEHVSELKM---QS 171 (623)
Q Consensus 107 sEv~ele~~~~~lq~~I~~~~~~~~s~~~---~~~~f~~--~~~~~~kL~~~~--~sLkq~-----~e~~~ei~~---qs 171 (623)
+||.+|=.-+..+..+|.-.-.++-|-.| .-++|.| |+.|-++++.|+ ..|.+. ..+|+.=.. -.
T Consensus 6 kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkDisdkIdkCeC~Kelle~Lk~q~d~~iip~~~~~~~~ 85 (121)
T PF03310_consen 6 KEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKDISDKIDKCECNKELLEALKKQPDKQIIPSPEEDSKG 85 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHT-TTHHHHHHHHT-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCcCCCCCCCCCC
Confidence 34444444444444444444333333333 2334444 555566666652 111111 222322222 24
Q ss_pred HhhhhhhhhcccCCCccc
Q 006984 172 AKFQRVLSYFIHGNNDEA 189 (623)
Q Consensus 172 a~f~r~~~~~~~~~~~~~ 189 (623)
.+|++ -+|.||++||.
T Consensus 86 ~~~~k--YSyPN~~VGne 101 (121)
T PF03310_consen 86 SSLQK--YSYPNWNVGNE 101 (121)
T ss_dssp ------------------
T ss_pred CCCcc--cCCCCCCCCch
Confidence 78888 34679999885
No 295
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=31.72 E-value=2.1e+02 Score=27.43 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006984 336 VLTMKEKVKSLEEQLKESEIRLQ 358 (623)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~ 358 (623)
+..|++.+..+..+.+.....|.
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333333
No 296
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=30.93 E-value=1.9e+02 Score=30.97 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHH
Q 006984 350 LKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEE 397 (623)
Q Consensus 350 Ldes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAes 397 (623)
+.....++++++..+....++-++|+..|+--+-+++|++-|+.+-.+
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~ 218 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQS 218 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455555555556777889999999999999999999988653
No 297
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=30.81 E-value=3.6e+02 Score=26.42 Aligned_cols=62 Identities=21% Similarity=0.290 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHhh-hHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHH
Q 006984 339 MKEKVKSLEEQLKESEIRLQNANACFQT-SQEQLNEMDNFIESLKESLYGAESRAESAEEKVT 400 (623)
Q Consensus 339 LqkKvksLE~qLdes~eQL~~A~aklEe-sE~EVaaLerrIelLKEel~rAEsRa~tAesKle 400 (623)
+-.++-.+++.++....|...+....+. ..++....+..|+.|+.++.+++.-.+.-..+++
T Consensus 123 li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 123 LIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433322222 2345556666677777777665554444444433
No 298
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=30.40 E-value=1e+03 Score=28.61 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=10.2
Q ss_pred hhcCCCCceeeecc
Q 006984 572 QYSGKSSSATMYNA 585 (623)
Q Consensus 572 d~t~~~~~~~~~~~ 585 (623)
=||+-...+||.|.
T Consensus 400 GQTGSGKTyTM~G~ 413 (670)
T KOG0239|consen 400 GQTGSGKTYTMSGP 413 (670)
T ss_pred cccCCCccccccCC
Confidence 46677777888875
No 299
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=29.91 E-value=1.4e+03 Score=29.91 Aligned_cols=34 Identities=3% Similarity=-0.062 Sum_probs=16.7
Q ss_pred hhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHh
Q 006984 489 QCIVLSEDNFELKNKQSFMRDKIKILESSLNRAN 522 (623)
Q Consensus 489 Kc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~ 522 (623)
+|.+++..=..-+.+++.+.+++..+=...-...
T Consensus 532 ~~~~~~k~~~~k~~~~~k~~~~~~~~~~~~~~~~ 565 (1294)
T KOG0962|consen 532 KLELLKKKLRKKDAELRKIKSRLSDEKGRAIEFP 565 (1294)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhcchhhhhhhccC
Confidence 3444444444445555555555555544444333
No 300
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.77 E-value=1e+03 Score=28.43 Aligned_cols=48 Identities=25% Similarity=0.285 Sum_probs=30.9
Q ss_pred hhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHH
Q 006984 388 AESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLE 438 (623)
Q Consensus 388 AEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~ 438 (623)
+-++...-..|.--..+-+.++-.+++-+++. ++.|+..||.+.+.-.
T Consensus 429 e~~~y~de~~kaqaevdrlLeilkeveneKnD---kdkkiaeler~~kdqn 476 (654)
T KOG4809|consen 429 EASYYRDECGKAQAEVDRLLEILKEVENEKND---KDKKIAELERHMKDQN 476 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---ccchhhhcCchhhhhh
Confidence 33333333344444566677777788878775 6688888888777543
No 301
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=29.46 E-value=3.2e+02 Score=29.82 Aligned_cols=59 Identities=24% Similarity=0.239 Sum_probs=53.3
Q ss_pred hHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCCh
Q 006984 275 SAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKN 333 (623)
Q Consensus 275 a~EvL~g~skel~gkLq~~qf~L~~s~~REsel~sKL~~~~eqL~~k~~~lekl~~s~e 333 (623)
+--||+-.-+..+-++|.+-..||....-|..|-+|++.-.-.|+.-..-|++|++-+.
T Consensus 106 ~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP 164 (338)
T KOG3647|consen 106 VEKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRP 164 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 34578889999999999999999999999999999999999899988888999998854
No 302
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=29.16 E-value=7.4e+02 Score=26.55 Aligned_cols=63 Identities=14% Similarity=0.202 Sum_probs=41.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc--CCCCceeeeccCCCCCcceeec
Q 006984 534 HRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS--GKSSSATMYNAGDTDDKELLIN 596 (623)
Q Consensus 534 ~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t--~~~~~~~~~~~~~~~~~~~~~~ 596 (623)
.-.-.+.+-..+.-.+++.|+.+|.-++.+.+.|.....+- ..-+++-|...--|.|-|+..|
T Consensus 186 ~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~iF~dvll~rpKCTPDmdV~Ln 250 (258)
T PF15397_consen 186 LENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPREVIFADVLLRRPKCTPDMDVILN 250 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhhHHHhcCCCCCCCCchhhcC
Confidence 33445555566677778888888888888888877666633 2234555666666666666554
No 303
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=29.00 E-value=5.4e+02 Score=31.14 Aligned_cols=69 Identities=25% Similarity=0.315 Sum_probs=50.3
Q ss_pred HHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhh
Q 006984 371 LNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAK 445 (623)
Q Consensus 371 VaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~ 445 (623)
-..+++.|+.|+.+....+.+...+.....++.+...+++++...|+.+ |-..++.-.++++.-+.+|+
T Consensus 515 ~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~------~~~~~~~~~~~a~~~l~~a~ 583 (782)
T PRK00409 515 KEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEE------EDKLLEEAEKEAQQAIKEAK 583 (782)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 3478888888888888888888888888888888888888888888764 44455555555554444444
No 304
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=28.84 E-value=3.3e+02 Score=30.09 Aligned_cols=46 Identities=22% Similarity=0.388 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHH
Q 006984 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFI 378 (623)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrI 378 (623)
.+.|.-||+|+..|+.+|.++..+|+.++..|.-+++.-+=|+..+
T Consensus 174 ~D~v~LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslL 219 (323)
T PF08537_consen 174 SDRVILLQKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLL 219 (323)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888888888887777655544433333333
No 305
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=28.69 E-value=84 Score=25.70 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=20.3
Q ss_pred hhhhhccchhhHHHHHHHHHhhHHHHHHHH
Q 006984 489 QCIVLSEDNFELKNKQSFMRDKIKILESSL 518 (623)
Q Consensus 489 Kc~~Lse~N~ELeEEL~~l~~~lksLE~sl 518 (623)
++..|+..|..|..++..+...+..|....
T Consensus 34 ~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 34 KVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355555666677777777777777776554
No 306
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=28.22 E-value=3.7e+02 Score=22.77 Aligned_cols=69 Identities=19% Similarity=0.321 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhH-----hhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHH
Q 006984 334 SEVLTMKEKVKSLEEQLKESEIRLQNAN-----ACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQL 402 (623)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~-----aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~L 402 (623)
.++.....++..|+..+..+...+.... ..+-....-+..+...|..++..+..++.....+...+..+
T Consensus 12 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a 85 (123)
T PF02050_consen 12 QELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEA 85 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 307
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=28.09 E-value=4.2e+02 Score=23.38 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=39.3
Q ss_pred hhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhh
Q 006984 405 TNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVS 477 (623)
Q Consensus 405 TNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme~vIEdLk~Kl~ 477 (623)
++.++..-.+.|++. +..++.+|.+. +.|+.+++.+-.+=+.--.+|.+--..|.+++.++.
T Consensus 33 ~~~e~~~~~~eL~~~-------l~~ie~~L~DL----~~aV~ive~np~kF~l~~~Ei~~Rr~fv~~~~~~i~ 94 (97)
T PF09177_consen 33 SSEELKWLKRELRNA-------LQSIEWDLEDL----EEAVRIVEKNPSKFNLSEEEISRRRQFVSAIRNQIK 94 (97)
T ss_dssp -HHHHHHHHHHHHHH-------HHHHHHHHHHH----HHHHHHHHCCHHHHT-HHHHHHHHHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHH-------HHHHHHHHHHH----HHHHHHHHhCccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 334555555555553 67778888764 588889888866212223477777788887766654
No 308
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=27.69 E-value=2e+02 Score=26.02 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=13.2
Q ss_pred HHHHHhHHHHHHHHHhHHHhhhhhHHH
Q 006984 368 QEQLNEMDNFIESLKESLYGAESRAES 394 (623)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~t 394 (623)
...+.++..-++--+++-.||-+|+++
T Consensus 44 ~~dv~~a~aaa~aAk~EA~RAN~RiDN 70 (85)
T PRK09973 44 EQDMKALRPQIYAAKSEANRANTRLDA 70 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334444444455555555555555543
No 309
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=27.38 E-value=1.5e+02 Score=27.23 Aligned_cols=72 Identities=18% Similarity=0.313 Sum_probs=41.8
Q ss_pred hhhHHHHHhHHHHHHHHHhHH-HhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHH
Q 006984 365 QTSQEQLNEMDNFIESLKESL-YGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQ 443 (623)
Q Consensus 365 EesE~EVaaLerrIelLKEel-~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqh 443 (623)
+..+.....++.-+++|-..| ..|=.-...|.-....+..-|..+.+.++..+. +++.|..||+..+..+++
T Consensus 11 ~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~-------~l~~lq~qL~~LK~v~~~ 83 (100)
T PF06428_consen 11 EEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEA-------LLESLQAQLKELKTVMES 83 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCH-------CCCHCTSSSSHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 334555555566666665555 445555555555555555666666666664444 367777777777744443
No 310
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=27.36 E-value=2.7e+02 Score=26.52 Aligned_cols=50 Identities=24% Similarity=0.377 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHh----hHhhhHHHHHhHHHHHHHHHhHH
Q 006984 336 VLTMKEKVKSLEEQLKESEIRLQNANA----CFQTSQEQLNEMDNFIESLKESL 385 (623)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~~A~a----klEesE~EVaaLerrIelLKEel 385 (623)
+.+|+.+++.+..++++|+..-....+ .+++....+.+++..+..||+++
T Consensus 10 ~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dV 63 (112)
T PF07439_consen 10 LGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADV 63 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhH
Confidence 456777777777777766665433222 22333444444444444444443
No 311
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=27.30 E-value=5.6e+02 Score=24.58 Aligned_cols=78 Identities=17% Similarity=0.084 Sum_probs=50.7
Q ss_pred HHHHHHHHhhHHHHHHHHHH----HhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCC
Q 006984 501 KNKQSFMRDKIKILESSLNR----ANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGK 576 (623)
Q Consensus 501 eEEL~~l~~~lksLE~sl~k----A~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~~ 576 (623)
..+-..+.+++|..+....+ ..+++..|+|-++.=.+ |..+...+.+++.-+.....-...|+.-|-.-.+
T Consensus 48 a~~Q~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~k-----v~els~~L~~~~~lL~~~v~~ie~LN~~LP~~~R 122 (131)
T PF10158_consen 48 AFDQNALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEK-----VNELSQQLSRCQSLLNQTVPSIETLNEILPEEER 122 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhc
Confidence 34444556666666555443 34555556555553333 6777777788777777777777777777888888
Q ss_pred CCceeee
Q 006984 577 SSSATMY 583 (623)
Q Consensus 577 ~~~~~~~ 583 (623)
=+||.|+
T Consensus 123 Lep~~~~ 129 (131)
T PF10158_consen 123 LEPFVWT 129 (131)
T ss_pred CCCCCCC
Confidence 8888775
No 312
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=27.28 E-value=8.2e+02 Score=26.61 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=16.7
Q ss_pred ccCCCcccchhcchHHHHHHHHHh
Q 006984 596 NPTNNLAGATVKTSEDAVSLMKSV 619 (623)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~ 619 (623)
.|.|.-.++.+.-+.++..+++++
T Consensus 189 ~~~~~~~~~~~~vs~e~a~~L~~a 212 (302)
T PF09738_consen 189 EPNNVGHPKRALVSQEAAQLLESA 212 (302)
T ss_pred CccccCCCcccccchhhhhhhccc
Confidence 345555666677778888888877
No 313
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=26.66 E-value=1.4e+03 Score=28.87 Aligned_cols=49 Identities=22% Similarity=0.391 Sum_probs=32.2
Q ss_pred hHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHH
Q 006984 464 DMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLN 519 (623)
Q Consensus 464 dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~ 519 (623)
.+.-.+|.++....++++.+|+-..+.- .|..||..+-.+++.|+..+.
T Consensus 470 ~L~d~le~~~~~~~~~~~K~e~~~~~le-------~l~~El~~l~~e~~~lq~~~~ 518 (980)
T KOG0980|consen 470 NLNDQLEELQRAAGRAETKTESQAKALE-------SLRQELALLLIELEELQRTLS 518 (980)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhh
Confidence 3334556566666666666666666666 788888888878777776643
No 314
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=26.46 E-value=4.2e+02 Score=22.81 Aligned_cols=20 Identities=30% Similarity=0.620 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006984 338 TMKEKVKSLEEQLKESEIRL 357 (623)
Q Consensus 338 sLqkKvksLE~qLdes~eQL 357 (623)
.|.++...++.+++....++
T Consensus 66 ~L~~~~~~~~~~i~~l~~~~ 85 (106)
T PF01920_consen 66 ELEERIEKLEKEIKKLEKQL 85 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333
No 315
>KOG4324 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.21 E-value=4e+02 Score=30.64 Aligned_cols=163 Identities=18% Similarity=0.224 Sum_probs=99.1
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCC---------------cchhhhhHHHHHHHHHHHHHHhhhhh
Q 006984 384 SLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDS---------------NTKKVGILENQLRDLEIQLQQAKVSS 448 (623)
Q Consensus 384 el~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~---------------deEk~~~LE~QLKEa~~QLqhA~asa 448 (623)
++.+-++..+-...||. +...++-.+-+.-.+-+.... -+.+...|=.||.++++.+--+....
T Consensus 59 ~v~~l~e~~~~~~~~rn-ae~ea~~v~~e~ed~tss~~dean~mva~aRke~~a~e~~~~ql~~ql~~~dt~~~s~~~ql 137 (476)
T KOG4324|consen 59 KVHNLEEKLQLTETKRN-AESEADRVEVELEDLTSSLFDEANNMVANARKETYASEKRVNQLKKQLVEADTLLSSAQLQL 137 (476)
T ss_pred HHhcCccchhhcccccC-chhhhccccCCCcchhcccccccccccccccccchhhhhhhhhhhHHhhhhhcccchhhhhh
Confidence 34445555555666663 555555555544444333221 14556777778877776555444433
Q ss_pred HhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 006984 449 EASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (623)
Q Consensus 449 Eas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~t 528 (623)
..-+. |.. +++-+.=-+-|+..|.++.+-.-.--.+|-+||..-..+..|+.-|.. ++..- --+.
T Consensus 138 ~~Lkv---mhs--ms~r~e~snrl~~eLsrt~t~la~kd~~~d~lS~i~~~~s~e~~Elt~-------sLf~E---a~Km 202 (476)
T KOG4324|consen 138 DSLKV---MHS--MSDREEGSNRLKEELSRTQTELALKDEECDILSGIRAQLSQELEELTA-------SLFEE---AHKM 202 (476)
T ss_pred hHHHH---Hhh--cchhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHH-------HHHHH---HHHH
Confidence 33222 111 444444556678888888876666667787777777766666655533 33221 1233
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006984 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTS 562 (623)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~ke 562 (623)
+..+..|-++|+.+.+--...|+=|+.++-.++.
T Consensus 203 V~aA~~r~~~~ek~l~Esr~~i~~lqaEv~alk~ 236 (476)
T KOG4324|consen 203 VRAANPRQEFIEKQLTESRLKIDVLQAEVNALKT 236 (476)
T ss_pred hhhcccchhhhhhhhhHhHHHHHHHHHHHHHhHH
Confidence 6788899999999999888888888888777653
No 316
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=25.97 E-value=2.7e+02 Score=27.13 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=34.2
Q ss_pred HHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHH
Q 006984 306 ELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKE 352 (623)
Q Consensus 306 el~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLde 352 (623)
.+.+.++....||..++..|..|..+ ...+-.|+.++..|+.+.++
T Consensus 24 ~~~~e~~~~k~ql~~~d~~i~~Lk~~-~~d~eeLk~~i~~lq~~~~~ 69 (155)
T PF06810_consen 24 KVKEERDNLKTQLKEADKQIKDLKKS-AKDNEELKKQIEELQAKNKT 69 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHH
Confidence 34567777788888888888888875 55666778887777777763
No 317
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=25.63 E-value=9.9e+02 Score=27.39 Aligned_cols=52 Identities=37% Similarity=0.479 Sum_probs=30.7
Q ss_pred hhhhHHHHHHHHHHHHHHhh--------hhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhh
Q 006984 426 KVGILENQLRDLEIQLQQAK--------VSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAE 480 (623)
Q Consensus 426 k~~~LE~QLKEa~~QLqhA~--------asaEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE 480 (623)
|-+.||.||.++ ++||++. ++.|+...=|+ |+-.+|..-.+|-+++-+.|-|
T Consensus 307 R~erLEEqLNdl-teLqQnEi~nLKqElasmeervaYQs--yERaRdIqEalEscqtrisKlE 366 (455)
T KOG3850|consen 307 RYERLEEQLNDL-TELQQNEIANLKQELASMEERVAYQS--YERARDIQEALESCQTRISKLE 366 (455)
T ss_pred HHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777776 4555543 55555554454 6666666666665555544433
No 318
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=25.59 E-value=1.9e+02 Score=26.14 Aligned_cols=60 Identities=20% Similarity=0.308 Sum_probs=51.3
Q ss_pred hhhhhhh-HHHhhHHHhhhHHHHHhhhhhh---hHHHHHHHHHHHHHHHHHHhccchHHHHhhh
Q 006984 223 SLARELD-LEKKISELNQNEEQLKLKLHHT---EQVAFRMEEAAEVVWGRFLEAENSAEVLMGI 282 (623)
Q Consensus 223 Sla~eld-LEkkL~~s~~~eeeLk~kL~~~---eqe~~~lEE~~~~~~er~~EAENa~EvL~g~ 282 (623)
|+|.|+| ||.+|..-+..-+...-||+.. .....-||+....+.+++-.-|+-...|++.
T Consensus 2 ~V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 6788886 9999999999888888888764 4568889999999999999999999888874
No 319
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=25.55 E-value=6e+02 Score=30.75 Aligned_cols=48 Identities=25% Similarity=0.293 Sum_probs=38.6
Q ss_pred HhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcC
Q 006984 372 NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN 419 (623)
Q Consensus 372 aaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesr 419 (623)
..+++.|+.|+++....+.+...+.....++.+...+++++.+.|+.+
T Consensus 511 ~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~ 558 (771)
T TIGR01069 511 EEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKER 558 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367778888888888888888888888888888888888888877764
No 320
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=25.51 E-value=7e+02 Score=27.63 Aligned_cols=44 Identities=20% Similarity=0.250 Sum_probs=35.4
Q ss_pred hHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 006984 373 EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 416 (623)
Q Consensus 373 aLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~L 416 (623)
-+++.++.+=.+...+..++..+..++..++++..+..++++.+
T Consensus 263 ~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~I 306 (359)
T PF10498_consen 263 YINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEI 306 (359)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45666777777788888888889999999988888888887744
No 321
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=25.51 E-value=2.2e+02 Score=32.77 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHH
Q 006984 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL 385 (623)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel 385 (623)
.-|.|...||++|+...-.++.........+++|..|+..|..|+..+
T Consensus 73 eqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 73 EMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344566666666665543333222333333444444444444444444
No 322
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=25.22 E-value=6.4e+02 Score=26.00 Aligned_cols=96 Identities=22% Similarity=0.313 Sum_probs=0.0
Q ss_pred cchhchhHHHHHHHhHHHHHhhhhHHHHHhhcC--------------ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 006984 299 GSLQRESELKSKLGDFIEQLKAKDMVLQKLEST--------------KNSEVLTMKEKVKSLEEQLKESEIRLQNANACF 364 (623)
Q Consensus 299 ~s~~REsel~sKL~~~~eqL~~k~~~lekl~~s--------------~esEv~sLqkKvksLE~qLdes~eQL~~A~akl 364 (623)
|..+||.==+.-....+++|.+......|.-+. ++.|..-|-.++.-|+.++....-......+.+
T Consensus 30 ~~lq~e~lgktavqk~Ld~La~~Gki~~K~YGKqKIY~a~QDqF~~~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEi 109 (201)
T KOG4603|consen 30 GNLQREHLGKTAVQKTLDQLAQQGKIKEKMYGKQKIYFADQDQFDMVSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEI 109 (201)
T ss_pred HHHHHHhccchHHHHHHHHHHHcCchhHHhccceeeEeecHHhhcCCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHH--HHHhHHHHHHHHHhHHHhhhhhHHH
Q 006984 365 QTSQE--QLNEMDNFIESLKESLYGAESRAES 394 (623)
Q Consensus 365 EesE~--EVaaLerrIelLKEel~rAEsRa~t 394 (623)
-...+ .+-.|+..|+.|+..+..-++|+.+
T Consensus 110 k~L~s~Lt~eemQe~i~~L~kev~~~~erl~~ 141 (201)
T KOG4603|consen 110 KELSSALTTEEMQEEIQELKKEVAGYRERLKN 141 (201)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
No 323
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=25.02 E-value=2.5e+02 Score=26.82 Aligned_cols=51 Identities=22% Similarity=0.156 Sum_probs=35.9
Q ss_pred HHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcC
Q 006984 369 EQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN 419 (623)
Q Consensus 369 ~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesr 419 (623)
..+++...-|.+|++++.+.|.-++.-...+..+.+++.-+.++++....+
T Consensus 34 ~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 34 RQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455566777888888888878777777777777777777776655443
No 324
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=24.89 E-value=5.1e+02 Score=23.21 Aligned_cols=75 Identities=15% Similarity=0.186 Sum_probs=51.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 006984 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (623)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t 574 (623)
.|+.=|.-+...+..||...+.-....... -+++.+..-+..--.+|+.+.|........+..-|+.++..|+.+
T Consensus 5 ~le~al~rL~~aid~LE~~v~~r~~~~~~~-~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 5 SLEAALTRLEAAIDRLEKAVDRRLERDRKR-DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677778888888777766655544 455555555566666677777777777777777777777777643
No 325
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=24.78 E-value=7.3e+02 Score=25.01 Aligned_cols=46 Identities=17% Similarity=0.346 Sum_probs=23.1
Q ss_pred HHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 006984 369 EQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (623)
Q Consensus 369 ~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk 414 (623)
.++..+..++..|+..+.+...+......++..+-.++......+.
T Consensus 63 ~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 63 REIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555444444444433
No 326
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=24.63 E-value=9.5e+02 Score=26.30 Aligned_cols=13 Identities=31% Similarity=0.483 Sum_probs=7.9
Q ss_pred HHHHhHHHHHHHH
Q 006984 369 EQLNEMDNFIESL 381 (623)
Q Consensus 369 ~EVaaLerrIelL 381 (623)
.-|..|.+++..|
T Consensus 246 ~~l~~L~~~lslL 258 (388)
T PF04912_consen 246 PALNELERQLSLL 258 (388)
T ss_pred HHHHHHHHHHHhc
Confidence 3455666666666
No 327
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=24.60 E-value=3.3e+02 Score=30.90 Aligned_cols=54 Identities=22% Similarity=0.358 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh------------HHHHHhHHHHHHHHHhHHHh
Q 006984 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------------QEQLNEMDNFIESLKESLYG 387 (623)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEes------------E~EVaaLerrIelLKEel~r 387 (623)
+.+..||+-+...|.||-.+.-.|.+|....|.- +..|++++.+|.+||..+..
T Consensus 2 ~~~~elq~e~~~~E~qL~~a~qkl~da~~~~e~dpD~~nk~~~~~R~~~v~~~~~Ki~elkr~lAd 67 (428)
T PF00846_consen 2 STLEELQEEITQHEQQLVIARQKLKDAEKQYEKDPDDVNKSTLQQRQSVVSALQDKIAELKRQLAD 67 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788888899999998888888887776542 56888999999999888765
No 328
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=24.58 E-value=1.1e+03 Score=29.28 Aligned_cols=130 Identities=18% Similarity=0.170 Sum_probs=60.1
Q ss_pred HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhh
Q 006984 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS 447 (623)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~as 447 (623)
.+|.+-|-|++.-|...+-. ++|+. |..-. .+-+=|+-.|++.+ -+|++||+|+-..++
T Consensus 393 rsENaqLrRrLrilnqqlre-qe~~~----k~~~~----~~~n~El~sLqSlN-------~~Lq~ql~es~k~~e----- 451 (861)
T PF15254_consen 393 RSENAQLRRRLRILNQQLRE-QEKAE----KTSGS----QDCNLELFSLQSLN-------MSLQNQLQESLKSQE----- 451 (861)
T ss_pred hhhhHHHHHHHHHHHHHHHH-HHhhc----ccCCC----cccchhhHHHHHHH-------HHHHHHHHHHHHhHH-----
Confidence 45666777776666555433 11211 11111 22233444566653 478889988762222
Q ss_pred hHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhh-----hhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHh
Q 006984 448 SEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESK-----TESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRAN 522 (623)
Q Consensus 448 aEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~R-----aE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~ 522 (623)
.+-..-..++.|||-++.+--|.-.- -+..+.|-. ..-.+..+.-|+...=.+++++.-+|+.+.
T Consensus 452 ---------~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~-~d~e~~rik~ev~eal~~~k~~q~kLe~se 521 (861)
T PF15254_consen 452 ---------LLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQ-FDIETTRIKIEVEEALVNVKSLQFKLEASE 521 (861)
T ss_pred ---------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 12333444555555444443332211 011111110 111111344445555557777777777766
Q ss_pred HHHHhh
Q 006984 523 IEKAAS 528 (623)
Q Consensus 523 q~k~~t 528 (623)
-+..-.
T Consensus 522 kEN~iL 527 (861)
T PF15254_consen 522 KENQIL 527 (861)
T ss_pred hhhhHh
Confidence 555544
No 329
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=23.85 E-value=1.1e+03 Score=26.68 Aligned_cols=45 Identities=11% Similarity=0.285 Sum_probs=23.1
Q ss_pred HHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 006984 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (623)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk 414 (623)
+..-|+-.|--++++--+-+-.++.....|-+-++-+.+|+||++
T Consensus 128 ~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELa 172 (401)
T PF06785_consen 128 DIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELA 172 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHH
Confidence 333444444444444444444455555555555556666666655
No 330
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=23.70 E-value=3.1e+02 Score=29.19 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHhH
Q 006984 428 GILENQLRDLEIQLQQAKVSSEAS 451 (623)
Q Consensus 428 ~~LE~QLKEa~~QLqhA~asaEas 451 (623)
..++.++.+++.+++.|.+-.+.+
T Consensus 102 ~~~~a~l~~~~~~l~~a~~~l~~a 125 (370)
T PRK11578 102 KEVEATLMELRAQRQQAEAELKLA 125 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555554444443333
No 331
>PRK10698 phage shock protein PspA; Provisional
Probab=23.54 E-value=8.1e+02 Score=25.10 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=40.6
Q ss_pred HHHHhHHHHhh---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 006984 518 LNRANIEKAAS---AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (623)
Q Consensus 518 l~kA~q~k~~t---lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t 574 (623)
...|..+|..| +..+.....-....|.+|...+.+|+..|...+.+.+.|.......
T Consensus 87 Ar~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A 146 (222)
T PRK10698 87 ARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAA 146 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555 4455556677778888888888888888888888888877666543
No 332
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=23.42 E-value=1e+03 Score=26.30 Aligned_cols=69 Identities=17% Similarity=0.299 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH----hHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHH
Q 006984 333 NSEVLTMKEKVKSLEEQLKESEIRLQN----ANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQ 401 (623)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~----A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~ 401 (623)
++=+..+++++..+..++...-.+... +...++.+...+..|-.+|.+++++-.++|.-...-..-...
T Consensus 24 d~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~ 96 (383)
T PF04100_consen 24 DELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQ 96 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677777777777765555442 223344556666677777777766666666544433333333
No 333
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=23.34 E-value=7.4e+02 Score=24.59 Aligned_cols=84 Identities=20% Similarity=0.335 Sum_probs=50.6
Q ss_pred hHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHH--Hhh--HHHHHHhHHHH
Q 006984 464 DMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEK--AAS--AKEVNHRTKLM 539 (623)
Q Consensus 464 dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k--~~t--lKeae~Rak~a 539 (623)
++..=++++|.++...-...+..+.++ +..|.+|-..-...+.+++.. ..| |+++-.+--..
T Consensus 31 ~l~~EL~evk~~v~~~I~evD~Le~~e--------------r~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~ 96 (159)
T PF05384_consen 31 RLRKELEEVKEEVSEVIEEVDKLEKRE--------------RQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAML 96 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445566555554444443333 477777776555566665543 344 77777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006984 540 MEMVMQLATQRELIQKQVYSLT 561 (623)
Q Consensus 540 E~lV~KL~~ErdrLe~ql~s~k 561 (623)
..-..+|...||.|+..+..+.
T Consensus 97 re~E~qLr~rRD~LErrl~~l~ 118 (159)
T PF05384_consen 97 REREKQLRERRDELERRLRNLE 118 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788888888877766543
No 334
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=23.23 E-value=5.1e+02 Score=22.67 Aligned_cols=77 Identities=18% Similarity=0.258 Sum_probs=50.8
Q ss_pred ccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcccCCCcccccccccCCcccccccccccchHH
Q 006984 133 CKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQ 212 (623)
Q Consensus 133 ~~~~~~~f~~~~~~~~kL~~~~~sLkq~~e~~~ei~~qsa~f~r~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~mqt~eq 212 (623)
++.+..+|..+..+.. +..-+.+++-..+..||....+...++..+.... .|+++
T Consensus 2 ~e~lP~i~~~l~~~~~---d~~~~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~----------------------~s~ee 56 (83)
T PF07544_consen 2 IEFLPLIFDILHQISK---DPPLSSKDLDTATGSLKHKLQKARAAIRELPGID----------------------RSVEE 56 (83)
T ss_pred ccccchHHHHHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCcc----------------------CCHHH
Confidence 3444555665522111 1455678888889999988888877776644211 37788
Q ss_pred HHHHHHHHHHhhhhhhhHHHhh
Q 006984 213 QRHILRMLEKSLARELDLEKKI 234 (623)
Q Consensus 213 qR~iLrMLekSla~eldLEkkL 234 (623)
|-..++.|+..|++--.+=.++
T Consensus 57 q~~~i~~Le~~i~~k~~~L~~~ 78 (83)
T PF07544_consen 57 QEEEIEELEEQIRKKREVLQKF 78 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999988765553333
No 335
>PRK00295 hypothetical protein; Provisional
Probab=23.12 E-value=4.1e+02 Score=22.68 Aligned_cols=29 Identities=17% Similarity=0.215 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006984 540 MEMVMQLATQRELIQKQVYSLTSENKLLV 568 (623)
Q Consensus 540 E~lV~KL~~ErdrLe~ql~s~keenK~L~ 568 (623)
-+.|.+.++++++|..++..+..+.+.+.
T Consensus 25 n~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 25 NDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35688888999999999999988888765
No 336
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=22.85 E-value=1.4e+03 Score=27.80 Aligned_cols=312 Identities=16% Similarity=0.168 Sum_probs=0.0
Q ss_pred hHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHh
Q 006984 234 ISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGD 313 (623)
Q Consensus 234 L~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~~s~~REsel~sKL~~ 313 (623)
|.++-..|..|..++...+.|.+.+.-...-+-.-+ +||..+..+|+.....=--=+.+|+.
T Consensus 22 l~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~------------------~rl~~~~~~~~~~~~~~e~~~~~lr~ 83 (717)
T PF09730_consen 22 LQESASKEAYLQQRILELENELKQLRQELSNVQAEN------------------ERLSQLNQELRKECEDLELERKRLRE 83 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHH
Q 006984 314 FIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAE 393 (623)
Q Consensus 314 ~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~ 393 (623)
-+.+++.++.-|-.--+.=++|.-+|||-|.. |+.++-.....+..+-..++++.-++..++++-.=-.-||..++
T Consensus 84 e~ke~K~rE~rll~dyselEeENislQKqvs~----Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qle 159 (717)
T PF09730_consen 84 EIKEYKFREARLLQDYSELEEENISLQKQVSV----LKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLE 159 (717)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhhhcCCCCc--------------------------------------------------
Q 006984 394 SAEEKVTQLTDTNLELSEEINFLKGNNDSN-------------------------------------------------- 423 (623)
Q Consensus 394 tAesKle~LseTNdELerelk~Lesrs~~d-------------------------------------------------- 423 (623)
.|..=+..=-+.--.|.+++...-+.....
T Consensus 160 EALesl~~EReqk~~LrkEL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 239 (717)
T PF09730_consen 160 EALESLKSEREQKNALRKELDQHLNIESISYLSNLAISLDGLKFSEDPRAATEPNNDDEEENGGLNGGPGLAKGNGDNRM 239 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccccccchhhcccccccccccccccCCCCchhhhcchhhccchhccccccccc
Q ss_pred ---------------------------chhhhh-----------HHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhH
Q 006984 424 ---------------------------TKKVGI-----------LENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDM 465 (623)
Q Consensus 424 ---------------------------eEk~~~-----------LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dm 465 (623)
-.|+.. |-..|+++..||+|+......-.++-+-+-.-+.-+
T Consensus 240 ~~~~~~~~~~p~~~lv~DLfSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL 319 (717)
T PF09730_consen 240 STPRKSESFSPAPSLVSDLFSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDAL 319 (717)
T ss_pred CCCCCCCCCCCCCcccchhhhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhh------------------------hhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHH
Q 006984 466 ETLIEDLKSK------------------------VSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRA 521 (623)
Q Consensus 466 e~vIEdLk~K------------------------l~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA 521 (623)
-.+-.+...+ +..-+.+...+.+.++ .|..||+.++.++..++..-...
T Consensus 320 ~~l~~~ke~~~~~d~~~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~-------~Lk~ELk~Lk~k~~~~~~~~~~e 392 (717)
T PF09730_consen 320 RKLQEDKEQQSAEDSEKERDSHEDGDYYEVDINGLEILECKYKVAVSEVI-------QLKAELKALKSKYNELEERYKQE 392 (717)
T ss_pred hhhccchhhhhhhhcccccccccccchhhhccccHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 006984 522 NIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (623)
Q Consensus 522 ~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t 574 (623)
..+=..-+.++..+....+..+..-...+..|+.+|.....--..-...|..+
T Consensus 393 k~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsA 445 (717)
T PF09730_consen 393 KDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSA 445 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
No 337
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.68 E-value=5.4e+02 Score=25.19 Aligned_cols=10 Identities=30% Similarity=0.498 Sum_probs=4.8
Q ss_pred HHHhHHHHHH
Q 006984 461 AIWDMETLIE 470 (623)
Q Consensus 461 ei~dme~vIE 470 (623)
-+.|.-++|-
T Consensus 116 ~I~r~~~li~ 125 (192)
T PF05529_consen 116 VIRRVHSLIK 125 (192)
T ss_pred HHHHHHHHHH
Confidence 4455544444
No 338
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=22.64 E-value=1e+02 Score=25.88 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=24.9
Q ss_pred hHHHHHhHHHHHHHHHhHHHhhhhhHHHHH
Q 006984 367 SQEQLNEMDNFIESLKESLYGAESRAESAE 396 (623)
Q Consensus 367 sE~EVaaLerrIelLKEel~rAEsRa~tAe 396 (623)
.|+.++.|+.+++..+..+..||.|+..+.
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~~~k 59 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAKQAK 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 378888888888888888888888887653
No 339
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=22.36 E-value=2.7e+02 Score=27.22 Aligned_cols=58 Identities=21% Similarity=0.223 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCceeeeccCCCCCcce
Q 006984 536 TKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKEL 593 (623)
Q Consensus 536 ak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~~~~~~~~~~~~~~~~~~~ 593 (623)
.+-+|+++.++..+++.++.++....++.+.|..+++.+-.+.-+.=|++|+.-..++
T Consensus 41 ~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~kvgvvRYnAF~dmGg~L 98 (151)
T PF14584_consen 41 GKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQKVGVVRYNAFEDMGGDL 98 (151)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEEEccCcccccccc
Confidence 3356889999999999999999999999999999999998888888899988665554
No 340
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=22.29 E-value=1.1e+03 Score=26.03 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006984 336 VLTMKEKVKSLEEQLKESEIR 356 (623)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQ 356 (623)
+-.||+|++.||.+-......
T Consensus 162 le~Lq~Klk~LEeEN~~LR~E 182 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSE 182 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777655444433
No 341
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=22.06 E-value=6.4e+02 Score=26.14 Aligned_cols=76 Identities=21% Similarity=0.310 Sum_probs=35.9
Q ss_pred HHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHH
Q 006984 307 LKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLY 386 (623)
Q Consensus 307 l~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~ 386 (623)
||..|+++-..+.+|..++=.|... +..+.-++...+.++......+..-...++.++.++.-..+.++.|.+++-
T Consensus 15 LKqQLke~q~E~~~K~~Eiv~Lr~q----l~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~ 90 (202)
T PF06818_consen 15 LKQQLKESQAEVNQKDSEIVSLRAQ----LRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLG 90 (202)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhh
Confidence 5566666665555554444433321 223333334444444444444444444455555555555555555555443
No 342
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=22.03 E-value=9.5e+02 Score=25.55 Aligned_cols=194 Identities=20% Similarity=0.321 Sum_probs=100.0
Q ss_pred hhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcc----
Q 006984 107 SELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFI---- 182 (623)
Q Consensus 107 sEv~ele~~~~~lq~~I~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~~e~~~ei~~qsa~f~r~~~~~~---- 182 (623)
+.+...|.|+-.+-. |-+.+.++..+. -+..+.+.+.+....|.....-+.+|| .|..|.+++...-
T Consensus 139 ~~L~~~E~f~~~l~~-ip~~~~rl~~~~-------~~~~f~~~~~~l~~~l~~l~~a~~~l~-~S~~l~~lL~~iL~~GN 209 (370)
T PF02181_consen 139 ATLGPAEQFLLELSK-IPRLKERLEALL-------FKSEFEEQLEELKEKLEKLEAACEELR-ESKSLRRLLEIILAIGN 209 (370)
T ss_dssp TTB-HHHHHHHHHTT-STTHHHHHHHHH-------HHHTHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHH-HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHH
Confidence 556667777777765 666666654433 334467888888888888888888885 7889999887632
Q ss_pred --cCCC--cccccccccCCcccccccccccchHHHHHHHHHHHHhhhhhhhHHHhhHHHhhhHHHHHhhhhhhhHHHHHH
Q 006984 183 --HGNN--DEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRM 258 (623)
Q Consensus 183 --~~~~--~~~~~~~e~~~~~~~~~~~~mqt~eqqR~iLrMLekSla~eldLEkkL~~s~~~eeeLk~kL~~~eqe~~~l 258 (623)
|+.+ ++..+|.-+.=..- ..+.+.+.....|+.+-+.+.... -+.-....+| ..+
T Consensus 210 ~lN~g~~~g~A~GF~L~sL~kL----~~~Ks~d~~~tLL~~l~~~~~~~~------~~~~~~~~eL-----------~~v 268 (370)
T PF02181_consen 210 FLNGGTPRGNAKGFKLSSLSKL----KDTKSNDNKTTLLHYLVKIVEEKF------PDLLDLEDEL-----------SSV 268 (370)
T ss_dssp HHSTCSTTCS-SEE-GGGGGGC----CCSB-STTTSBHHHHHHHHHHTTS------GGGGGHHHHT-----------TTH
T ss_pred HhccCCCccccceecHHhHHHH----HhcccccCCchHHHHHHHHHHhcC------hHHhccHHHH-----------hhH
Confidence 2222 22222222221111 112222456678888877766521 1111111111 111
Q ss_pred HHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchh---chhHHHHHHHhHHHHHhhhhHHHHHhhcCChhH
Q 006984 259 EEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQ---RESELKSKLGDFIEQLKAKDMVLQKLESTKNSE 335 (623)
Q Consensus 259 EE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~~s~~---REsel~sKL~~~~eqL~~k~~~lekl~~s~esE 335 (623)
..++ .- -...+.+..+.+..++..++..+..... -.+....++....+... .+
T Consensus 269 ~~a~---------~~-~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~f~~~~~--------------~~ 324 (370)
T PF02181_consen 269 EKAS---------KV-SLDELEQDIKELEKGLEKIKKELEAIEKDEEDDDKFKEKMKEFLEEAE--------------TK 324 (370)
T ss_dssp HHCC---------TS--HHHHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHH--------------HH
T ss_pred Hhhh---------hh-hHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHH--------------HH
Confidence 1111 11 1334555566666666666666655544 44555666655554443 34
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006984 336 VLTMKEKVKSLEEQLKESE 354 (623)
Q Consensus 336 v~sLqkKvksLE~qLdes~ 354 (623)
+..|+.....++..++..-
T Consensus 325 ~~~l~~~~~~~~~~~~~~~ 343 (370)
T PF02181_consen 325 LDELQELYEELEEAFKQLL 343 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555554443
No 343
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=21.99 E-value=6.4e+02 Score=23.38 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=29.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 006984 531 EVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (623)
Q Consensus 531 eae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~ 573 (623)
++....+++++-+..|...++.|+.+|.........+...+.+
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566777777777777777777777777777766666654
No 344
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=21.71 E-value=4.1e+02 Score=21.01 Aligned_cols=56 Identities=18% Similarity=0.327 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhh
Q 006984 350 LKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT 405 (623)
Q Consensus 350 Ldes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseT 405 (623)
|+.....+...+.-.-..-.+|..-+..|..+...+.+|..++..+..++..+.+.
T Consensus 6 l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~ 61 (63)
T PF05739_consen 6 LDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKY 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333334444333444456777778889999999999999999999888877654
No 345
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=21.67 E-value=1.1e+03 Score=27.64 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhhhhhHhHHHHHhhhHH
Q 006984 431 ENQLRDLEIQLQQAKVSSEASQEQQSMLYS 460 (623)
Q Consensus 431 E~QLKEa~~QLqhA~asaEas~eqQ~mky~ 460 (623)
+++-.-++.||+.|+..||-.+.+++-.+.
T Consensus 353 ~kkrqnaekql~~Ake~~eklkKKrssv~g 382 (575)
T KOG4403|consen 353 NKKRQNAEKQLKEAKEMAEKLKKKRSSVFG 382 (575)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhcchhe
Confidence 334444555566666888888885554443
No 346
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=21.64 E-value=7.6e+02 Score=25.26 Aligned_cols=67 Identities=16% Similarity=0.326 Sum_probs=46.3
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 006984 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (623)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t 574 (623)
++.++..-+..+++.++....+.. ++-.+++-+++ +.+++.++.+++.+|-.+.-..+.|.+..+-.
T Consensus 129 DvT~~y~D~~arl~~l~~~~~rl~--------~ll~ka~~~~d-~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~s 195 (262)
T PF14257_consen 129 DVTEQYVDLEARLKNLEAEEERLL--------ELLEKAKTVED-LLEIERELSRVRSEIEQLEGQLKYLDDRVDYS 195 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH--------HHHHhcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhceE
Confidence 666777777777777766555433 33335555565 45788888899999999888888866655544
No 347
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=21.52 E-value=1.5e+02 Score=24.28 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCc
Q 006984 543 VMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSS 579 (623)
Q Consensus 543 V~KL~~ErdrLe~ql~s~keenK~L~ekld~t~~~~~ 579 (623)
..++..++..|+.++..++.+|..|..+++..+.++.
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~ 55 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPD 55 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 3566777788888888888888888887777744443
No 348
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=21.40 E-value=5.7e+02 Score=22.56 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=42.0
Q ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh---HHHHHHhHHHHHHHHHHH
Q 006984 496 DNFELKNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNHRTKLMMEMVMQL 546 (623)
Q Consensus 496 ~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~t---lKeae~Rak~aE~lV~KL 546 (623)
.-.+|..-|..+..-|.+|+.+..-+...-..| ..++..|..|+.++-.++
T Consensus 40 ~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~Rr~fv~~~~~~i 93 (97)
T PF09177_consen 40 LKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISRRRQFVSAIRNQI 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHHHHHHHHHHHHH
Confidence 345888888888888888888888877777776 889999999998887766
No 349
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=21.39 E-value=6e+02 Score=22.81 Aligned_cols=29 Identities=17% Similarity=0.082 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006984 536 TKLMMEMVMQLATQRELIQKQVYSLTSEN 564 (623)
Q Consensus 536 ak~aE~lV~KL~~ErdrLe~ql~s~keen 564 (623)
-.-|+..|++|..-+++|..-...+-.++
T Consensus 68 Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~ 96 (99)
T PF10046_consen 68 IDQIEEQVTELEQTVYELDEYSKELESKF 96 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445555444444444443333333
No 350
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.30 E-value=1.4e+03 Score=26.88 Aligned_cols=46 Identities=17% Similarity=0.087 Sum_probs=38.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 006984 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (623)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t 574 (623)
-|....|.+.|-..+-|+...+-++.++-..+.++.+.+++.|+.+
T Consensus 384 rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rs 429 (521)
T KOG1937|consen 384 RKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRS 429 (521)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566778888888899999999999888888888888888888754
No 351
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=21.12 E-value=3.4e+02 Score=25.19 Aligned_cols=44 Identities=25% Similarity=0.181 Sum_probs=33.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 006984 531 EVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (623)
Q Consensus 531 eae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t 574 (623)
++=.+-.-++..+.+|..++..|..++..+.++|..|.-+.++.
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~L 48 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHL 48 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777788888888888888888888887776655544
No 352
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=21.00 E-value=6.1e+02 Score=22.71 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=33.6
Q ss_pred HHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCC
Q 006984 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNN 420 (623)
Q Consensus 378 IelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs 420 (623)
+..+++.+.|.+.-...|-.|+..+....+-+.-+++.|....
T Consensus 26 ~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~ 68 (96)
T PF08647_consen 26 LTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQL 68 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 5566777777777777888888999999888888888777653
No 353
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=20.96 E-value=4.9e+02 Score=21.63 Aligned_cols=27 Identities=22% Similarity=0.497 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006984 333 NSEVLTMKEKVKSLEEQLKESEIRLQN 359 (623)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~ 359 (623)
+.|+.-|++++..++.++..+...|.+
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n 29 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSN 29 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 356777888888888888888877654
No 354
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=20.93 E-value=1.4e+03 Score=26.77 Aligned_cols=111 Identities=23% Similarity=0.265 Sum_probs=77.0
Q ss_pred HHhHHHHHHHHhhhhhhhhhhhhhhhhhhh-----hhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh------HH
Q 006984 462 IWDMETLIEDLKSKVSKAESKTESVEEQCI-----VLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS------AK 530 (623)
Q Consensus 462 i~dme~vIEdLk~Kl~rAE~RaE~aEsKc~-----~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~t------lK 530 (623)
=.++-.-|+|.|--.+||=.| .++++.+ =||--..|=+.|-+|++..=++|..+|--.-+.--.. ++
T Consensus 360 Hr~i~egI~dVKkaAakAg~k--G~~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~ 437 (488)
T PF06548_consen 360 HRRIMEGIEDVKKAAAKAGVK--GAESRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLR 437 (488)
T ss_pred HHHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344445566666666666433 3455544 1222233445555566667788888886554444333 89
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 006984 531 EVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (623)
Q Consensus 531 eae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t 574 (623)
+++.-+.++++--+..+.+-+++..||-.+|.+++.=..++++-
T Consensus 438 eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~kh~~Ei~t~kq~ 481 (488)
T PF06548_consen 438 EAEEAASVAQERAMDAEQENEKAKKQIEKLKRKHKMEISTMKQY 481 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999877777654
No 355
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=20.69 E-value=6.6e+02 Score=27.81 Aligned_cols=59 Identities=14% Similarity=0.228 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhh
Q 006984 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESR 391 (623)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsR 391 (623)
..|..+|++-.++|++--+.+...+.........+-..|+.-..++..|+..+.+.+..
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~ 61 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKS 61 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 36778888999999999999888888777666667777777778888888777776543
No 356
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=20.45 E-value=1.2e+03 Score=25.89 Aligned_cols=20 Identities=15% Similarity=0.037 Sum_probs=12.8
Q ss_pred hHHHHHHHHHhhcCCccccccC
Q 006984 62 NLHVLLMYLLARGDDLETLVME 83 (623)
Q Consensus 62 NL~~l~M~~~~~~~~~E~~~~~ 83 (623)
.|.-.+|..+. .+|+++--.
T Consensus 47 ~L~~WL~~~~g--~~f~~p~e~ 66 (359)
T PF10498_consen 47 SLCAWLISKAG--RKFEQPQEY 66 (359)
T ss_pred HHHHHHHHhcC--CCCCCCccc
Confidence 46666777665 788855443
Done!