Query 006984
Match_columns 623
No_of_seqs 97 out of 106
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 14:08:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006984.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006984hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b9c_A Striated-muscle alpha t 99.9 3.6E-25 1.2E-29 206.1 9.2 138 374-532 1-138 (147)
2 2efr_A General control protein 99.9 6.1E-21 2.1E-25 179.3 16.5 122 426-575 1-132 (155)
3 1c1g_A Tropomyosin; contractIl 98.9 3.7E-05 1.3E-09 70.8 34.6 80 337-416 51-130 (284)
4 1c1g_A Tropomyosin; contractIl 98.7 0.0002 6.9E-09 65.9 33.1 77 338-414 87-163 (284)
5 2z5i_A TM, general control pro 98.6 7.6E-08 2.6E-12 76.1 6.1 45 531-575 2-46 (52)
6 2efr_A General control protein 98.4 8.2E-06 2.8E-10 77.0 15.0 143 342-519 1-143 (155)
7 1i84_S Smooth muscle myosin he 98.3 7E-07 2.4E-11 104.5 8.2 8 112-119 666-673 (1184)
8 3u1c_A Tropomyosin alpha-1 cha 98.3 5.3E-06 1.8E-10 72.8 10.7 52 333-384 43-101 (101)
9 1i84_S Smooth muscle myosin he 98.2 9.3E-07 3.2E-11 103.5 6.4 24 540-563 1143-1166(1184)
10 1ic2_A Tropomyosin alpha chain 98.1 1.4E-05 4.6E-10 67.5 9.5 70 338-407 3-79 (81)
11 3u59_A Tropomyosin beta chain; 98.0 1.7E-05 5.7E-10 69.3 9.0 52 333-384 43-101 (101)
12 2b9c_A Striated-muscle alpha t 97.6 0.0017 5.8E-08 60.6 15.3 141 286-437 1-141 (147)
13 3u1c_A Tropomyosin alpha-1 cha 97.4 0.0012 4.2E-08 57.8 11.6 81 338-418 6-93 (101)
14 3vkg_A Dynein heavy chain, cyt 97.3 0.038 1.3E-06 71.3 26.6 181 356-570 1921-2106(3245)
15 3u59_A Tropomyosin beta chain; 97.0 0.0065 2.2E-07 53.0 11.2 81 339-419 7-94 (101)
16 3mud_A DNA repair protein XRCC 96.7 0.00079 2.7E-08 64.8 3.6 47 529-575 116-169 (175)
17 3na7_A HP0958; flagellar bioge 96.5 0.18 6E-06 49.9 18.9 144 288-438 11-163 (256)
18 3na7_A HP0958; flagellar bioge 96.2 0.55 1.9E-05 46.3 20.1 53 340-399 31-83 (256)
19 1ic2_A Tropomyosin alpha chain 96.1 0.02 6.7E-07 48.2 8.2 71 286-367 4-74 (81)
20 2v71_A Nuclear distribution pr 95.7 0.66 2.3E-05 45.2 17.6 71 489-567 110-180 (189)
21 3vkg_A Dynein heavy chain, cyt 95.6 0.55 1.9E-05 61.1 21.5 188 308-514 1909-2103(3245)
22 3o0z_A RHO-associated protein 94.9 1.8 6.3E-05 41.5 17.8 59 423-481 4-62 (168)
23 2v71_A Nuclear distribution pr 92.9 6.5 0.00022 38.3 17.6 22 339-360 22-43 (189)
24 2fxo_A Myosin heavy chain, car 92.5 2.5 8.5E-05 38.1 13.3 107 461-567 14-123 (129)
25 2dfs_A Myosin-5A; myosin-V, in 92.0 3.4 0.00011 48.9 17.1 70 364-443 972-1041(1080)
26 2fxo_A Myosin heavy chain, car 91.5 3.4 0.00012 37.2 13.1 79 334-412 34-112 (129)
27 3o0z_A RHO-associated protein 91.4 5.4 0.00018 38.3 14.8 113 297-416 18-137 (168)
28 3oja_B Anopheles plasmodium-re 91.1 3.4 0.00012 43.9 14.7 130 367-520 454-583 (597)
29 3mtu_E Head morphogenesis prot 91.0 0.18 6.3E-06 42.9 3.9 30 546-575 42-71 (77)
30 2dfs_A Myosin-5A; myosin-V, in 88.0 6.6 0.00023 46.5 15.2 20 52-71 453-475 (1080)
31 3oja_B Anopheles plasmodium-re 87.4 18 0.00062 38.4 17.0 74 499-572 506-582 (597)
32 3bas_A Myosin heavy chain, str 81.8 10 0.00035 32.3 9.7 28 392-419 58-85 (89)
33 2ocy_A RAB guanine nucleotide 77.3 47 0.0016 31.4 13.5 35 370-404 59-93 (154)
34 3hnw_A Uncharacterized protein 74.9 10 0.00035 34.9 8.2 50 368-417 81-130 (138)
35 3i00_A HIP-I, huntingtin-inter 73.3 8.4 0.00029 35.0 7.0 101 298-401 6-110 (120)
36 2k48_A Nucleoprotein; viral pr 72.8 15 0.00051 33.0 8.3 57 333-389 34-102 (107)
37 3tnu_B Keratin, type II cytosk 71.6 18 0.0006 32.4 8.7 20 367-386 34-53 (129)
38 1gd2_E Transcription factor PA 70.5 7.8 0.00027 32.2 5.7 48 519-566 21-68 (70)
39 2ocy_A RAB guanine nucleotide 69.8 44 0.0015 31.6 11.3 36 222-257 10-45 (154)
40 2zqm_A Prefoldin beta subunit 69.1 49 0.0017 28.1 10.7 39 529-567 72-110 (117)
41 2e7s_A RAB guanine nucleotide 68.8 10 0.00036 35.2 6.7 21 384-404 61-81 (135)
42 3mq9_A Bone marrow stromal ant 67.4 29 0.00098 36.1 10.6 71 376-449 397-467 (471)
43 2ic6_A Nucleocapsid protein; h 67.2 24 0.00083 30.1 8.1 55 334-388 5-71 (78)
44 3hnw_A Uncharacterized protein 63.9 34 0.0012 31.5 9.1 54 338-391 79-132 (138)
45 3tnu_A Keratin, type I cytoske 62.6 29 0.001 31.1 8.3 19 368-386 37-55 (131)
46 2ic9_A Nucleocapsid protein; h 62.4 29 0.00098 30.7 7.9 57 334-390 5-73 (96)
47 2k48_A Nucleoprotein; viral pr 61.4 8.5 0.00029 34.6 4.4 74 279-353 26-101 (107)
48 2v4h_A NF-kappa-B essential mo 59.9 76 0.0026 28.7 10.3 82 468-564 25-106 (110)
49 1fxk_A Prefoldin; archaeal pro 56.8 87 0.003 26.2 10.4 36 529-564 67-102 (107)
50 4fi5_A Nucleoprotein; structur 54.9 47 0.0016 30.2 8.1 56 335-390 23-90 (113)
51 3tnu_A Keratin, type I cytoske 54.5 1.2E+02 0.0039 27.2 10.8 78 333-410 37-118 (131)
52 3azd_A Short alpha-tropomyosin 54.3 4.8 0.00016 29.7 1.4 31 334-364 4-34 (37)
53 3mq9_A Bone marrow stromal ant 54.0 2E+02 0.007 29.7 14.2 71 426-513 398-468 (471)
54 2i1j_A Moesin; FERM, coiled-co 53.6 31 0.0011 38.0 8.2 31 461-491 427-457 (575)
55 2ic6_A Nucleocapsid protein; h 53.5 16 0.00053 31.3 4.5 65 378-446 7-73 (78)
56 3tnu_B Keratin, type II cytosk 53.4 1.2E+02 0.0042 26.9 12.0 78 333-410 35-116 (129)
57 2jee_A YIIU; FTSZ, septum, coi 53.3 51 0.0018 28.3 7.7 59 459-517 19-77 (81)
58 2i1j_A Moesin; FERM, coiled-co 50.3 17 0.00059 40.0 5.6 22 376-397 363-384 (575)
59 4fi5_A Nucleoprotein; structur 49.1 18 0.00062 32.8 4.5 66 378-447 24-91 (113)
60 2ic9_A Nucleocapsid protein; h 47.1 21 0.00073 31.5 4.5 66 377-446 6-73 (96)
61 1jcd_A Major outer membrane li 47.0 64 0.0022 25.5 6.8 27 368-394 24-50 (52)
62 3mq7_A Bone marrow stromal ant 46.2 1.8E+02 0.0061 26.7 11.1 23 339-361 23-45 (121)
63 4ev6_A Magnesium transport pro 43.1 2.4E+02 0.0083 28.3 12.3 60 99-180 156-215 (339)
64 2v66_B Nuclear distribution pr 42.9 1.9E+02 0.0064 26.0 12.8 33 338-370 53-85 (111)
65 3efg_A Protein SLYX homolog; x 42.2 55 0.0019 27.5 6.2 48 528-575 15-62 (78)
66 3jsv_C NF-kappa-B essential mo 40.9 1.7E+02 0.0059 25.7 9.3 88 469-571 4-91 (94)
67 3mov_A Lamin-B1; LMNB1, B-type 40.8 68 0.0023 27.8 6.7 64 329-402 7-70 (95)
68 2v4h_A NF-kappa-B essential mo 39.4 2.2E+02 0.0074 25.8 10.4 52 305-357 27-78 (110)
69 1sjj_A Actinin; 3-helix bundle 38.3 4.6E+02 0.016 29.2 26.6 265 108-397 306-599 (863)
70 4emc_A Monopolin complex subun 38.1 47 0.0016 32.5 5.8 44 315-358 12-65 (190)
71 1v9d_A Diaphanous protein homo 38.0 1.9E+02 0.0065 29.4 10.7 108 59-182 176-283 (340)
72 3htk_A Structural maintenance 37.7 1.4E+02 0.0047 23.0 8.2 50 336-385 7-56 (60)
73 3bas_A Myosin heavy chain, str 37.4 1.9E+02 0.0064 24.4 10.4 24 538-561 60-83 (89)
74 3s4r_A Vimentin; alpha-helix, 37.2 1.5E+02 0.0051 25.4 8.3 29 391-419 17-45 (93)
75 1t2k_D Cyclic-AMP-dependent tr 37.2 1.3E+02 0.0045 23.6 7.4 44 519-562 14-57 (61)
76 1go4_E MAD1 (mitotic arrest de 36.1 1.5E+02 0.0051 26.3 8.2 21 540-560 74-94 (100)
77 1m1j_B Fibrinogen beta chain; 35.4 3.5E+02 0.012 29.5 12.7 29 377-405 101-129 (464)
78 4emc_A Monopolin complex subun 35.1 1E+02 0.0035 30.2 7.6 46 478-523 10-55 (190)
79 3mq7_A Bone marrow stromal ant 35.1 1.1E+02 0.0037 28.1 7.3 70 374-446 23-92 (121)
80 3qh9_A Liprin-beta-2; coiled-c 34.2 1.5E+02 0.0051 25.6 7.6 32 334-365 26-57 (81)
81 3t98_B Nucleoporin NUP58/NUP45 34.0 1.6E+02 0.0056 25.5 8.0 69 499-567 16-84 (93)
82 2lw1_A ABC transporter ATP-bin 33.9 1.3E+02 0.0043 25.2 7.2 58 335-393 23-80 (89)
83 3cve_A Homer protein homolog 1 32.0 1.9E+02 0.0064 24.3 7.8 35 325-360 6-40 (72)
84 4abm_A Charged multivesicular 30.8 2.4E+02 0.0081 23.6 9.9 33 528-560 46-78 (79)
85 3azd_A Short alpha-tropomyosin 30.2 16 0.00053 27.0 0.8 31 369-399 4-34 (37)
86 3i00_A HIP-I, huntingtin-inter 30.1 1.9E+02 0.0064 26.1 8.1 19 473-491 91-109 (120)
87 2oqq_A Transcription factor HY 30.0 1.4E+02 0.0046 23.0 5.9 40 527-573 3-42 (42)
88 1deq_A Fibrinogen (alpha chain 29.3 5E+02 0.017 27.9 12.3 55 461-515 135-189 (390)
89 3a7o_A Autophagy protein 16; c 29.3 2.6E+02 0.0089 23.7 8.2 30 546-575 44-73 (75)
90 3swy_A Cyclic nucleotide-gated 29.1 1.6E+02 0.0055 22.8 6.4 44 338-384 2-45 (46)
91 1lwu_C Fibrinogen gamma chain; 28.8 94 0.0032 32.3 6.7 50 340-389 4-53 (323)
92 3jsv_C NF-kappa-B essential mo 28.6 1.9E+02 0.0063 25.5 7.5 78 305-383 5-89 (94)
93 4fla_A Regulation of nuclear P 28.1 2.5E+02 0.0086 26.1 8.8 114 440-560 33-147 (152)
94 3ghg_A Fibrinogen alpha chain; 27.5 2.4E+02 0.0084 31.5 9.8 21 224-244 56-76 (562)
95 1x79_B RAB GTPase binding effe 26.7 3.5E+02 0.012 24.3 10.0 72 493-571 36-107 (112)
96 1l8d_A DNA double-strand break 26.4 2.9E+02 0.01 23.3 10.9 22 499-520 21-42 (112)
97 3ghg_A Fibrinogen alpha chain; 26.3 4.4E+02 0.015 29.5 11.5 41 534-574 131-188 (562)
98 1ux5_A BNI1 protein; structura 26.2 2.1E+02 0.007 29.8 8.8 106 63-182 261-368 (411)
99 2jee_A YIIU; FTSZ, septum, coi 26.1 3.1E+02 0.011 23.5 10.0 64 336-399 15-78 (81)
100 1t2k_D Cyclic-AMP-dependent tr 26.1 60 0.0021 25.5 3.6 35 483-517 24-58 (61)
101 1jnm_A Proto-oncogene C-JUN; B 25.3 1.9E+02 0.0064 22.8 6.4 44 518-561 13-56 (62)
102 4dnd_A Syntaxin-10, SYN10; str 25.2 3.5E+02 0.012 24.4 9.0 63 407-480 63-125 (130)
103 1dh3_A Transcription factor CR 24.8 1.7E+02 0.0057 22.9 5.9 40 518-564 13-52 (55)
104 1gl2_D Syntaxin 8, vesicle tra 24.4 2.2E+02 0.0077 22.2 6.7 55 348-402 9-63 (65)
105 2akf_A Coronin-1A; coiled coil 24.1 64 0.0022 23.2 3.0 18 541-558 13-30 (32)
106 4etp_A Kinesin-like protein KA 22.9 1.2E+02 0.0042 31.9 6.4 53 333-385 9-61 (403)
107 2eqb_B RAB guanine nucleotide 22.8 4E+02 0.014 23.5 11.6 14 469-482 28-41 (97)
108 3nmd_A CGMP dependent protein 22.7 2.5E+02 0.0087 23.6 6.9 42 346-387 24-65 (72)
109 1wt6_A Myotonin-protein kinase 22.3 2.4E+02 0.0082 24.3 6.8 35 474-515 38-72 (81)
110 4h22_A Leucine-rich repeat fli 21.7 2.6E+02 0.0089 25.0 7.2 47 372-418 26-72 (103)
111 2zqm_A Prefoldin beta subunit 21.7 3.6E+02 0.012 22.7 9.5 22 337-358 73-94 (117)
112 3cvf_A Homer-3, homer protein 21.6 2.6E+02 0.0088 23.8 6.9 61 320-381 7-74 (79)
113 1t6f_A Geminin; coiled-coil, c 21.5 87 0.003 23.4 3.4 26 544-569 10-35 (37)
114 3ol1_A Vimentin; structural ge 21.4 4.2E+02 0.014 23.3 12.2 79 333-418 19-104 (119)
115 2j1d_G DAAM1, disheveled-assoc 20.9 2.3E+02 0.0078 30.4 8.0 110 58-182 257-366 (483)
116 1fxk_A Prefoldin; archaeal pro 20.1 3.8E+02 0.013 22.2 9.0 22 305-326 18-39 (107)
No 1
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=99.91 E-value=3.6e-25 Score=206.10 Aligned_cols=138 Identities=22% Similarity=0.321 Sum_probs=125.2
Q ss_pred HHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHH
Q 006984 374 MDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQE 453 (623)
Q Consensus 374 LerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaEas~e 453 (623)
|+|+|++|++++.+|++|+.+|..||..+++++++++|.+++|++|+..+++|++.||.||++++ .+|+++++
T Consensus 1 l~Rri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak-------~~aeeadr 73 (147)
T 2b9c_A 1 MNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAK-------HIAEDADR 73 (147)
T ss_dssp ----------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999988 99999999
Q ss_pred HHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHH
Q 006984 454 QQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEV 532 (623)
Q Consensus 454 qQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKea 532 (623)
+|++++|+++|++ ++|.||+.|++.+|+||. +|+++|+.++++|||||++..+|+++++.|-..|
T Consensus 74 ----KyeE~~RKl~~~E---~dLeraeeRae~aE~k~~-------eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I 138 (147)
T 2b9c_A 74 ----KYEEVARKLVIIE---SDLERAEERAELSEGKCA-------ELEEELKTVTNNLKSLEDKVEELLSKNYHLENEV 138 (147)
T ss_dssp ----HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999 9999999999999999999999999999996554
No 2
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=99.86 E-value=6.1e-21 Score=179.32 Aligned_cols=122 Identities=17% Similarity=0.281 Sum_probs=117.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHH
Q 006984 426 KVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQS 505 (623)
Q Consensus 426 k~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~ 505 (623)
||+.||.|||++ ++++++ +|++++| +| ++|+|||.|++.+|+||. +|+++|+
T Consensus 1 r~~~lE~qlkea----------ae~ad~----KyeEvaR----~E---~dLEraEERae~aE~k~~-------eLEeeL~ 52 (155)
T 2efr_A 1 RMKQLEDKVEEL----------LSKNYH----LENEVAR----LK---KLLERAEERAELSEGKSA-------ELEEELK 52 (155)
T ss_dssp CHHHHHHHHHHH----------HHHHHH----HHHHHHH----HH---HHHHHHHHHHHHHHHHHH-------HHHHHHH
T ss_pred CHHHHHHHHHHH----------HHHhHH----HHHHHHH----HH---HHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 588999999985 689999 9999999 77 999999999999999999 9999999
Q ss_pred HHHhhHHHHHHHHHHHhHHHHhh----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006984 506 FMRDKIKILESSLNRANIEKAAS----------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (623)
Q Consensus 506 ~l~~~lksLE~sl~kA~q~k~~t----------lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (623)
.+++++||||++..+|+++++.| +|++++|++|+++.|++|++++|+|++.|.+.+.+|+.+.++||+|-
T Consensus 53 ~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl 132 (155)
T 2efr_A 53 TVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLE 132 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999873
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.86 E-value=3.7e-05 Score=70.82 Aligned_cols=80 Identities=16% Similarity=0.255 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 006984 337 LTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 416 (623)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~L 416 (623)
..+...+..+...+.....++..+...+...+.++..+..++..+...+.+.+.++.....++..+...-.++...+..+
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 130 (284)
T 1c1g_A 51 KATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVI 130 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444445555555555555555555555555555555555554444444444444
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.68 E-value=0.0002 Score=65.87 Aligned_cols=77 Identities=13% Similarity=0.242 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 006984 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (623)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk 414 (623)
.+..++..++.++......+......+......+..+...+..+...+...+.....+..++..+......+...+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 163 (284)
T 1c1g_A 87 SLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYE 163 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433333333344444444444444444444444444444444333333333333
No 5
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=98.57 E-value=7.6e-08 Score=76.05 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=42.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006984 531 EVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (623)
Q Consensus 531 eae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (623)
++-+||+||||+|+||+++||+|++.+++.|++|+.+.+++|+|-
T Consensus 2 ~~~~~aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~tl 46 (52)
T 2z5i_A 2 ELLSKNYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDHAL 46 (52)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999985
No 6
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=98.36 E-value=8.2e-06 Score=77.03 Aligned_cols=143 Identities=21% Similarity=0.287 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCC
Q 006984 342 KVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNND 421 (623)
Q Consensus 342 KvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~ 421 (623)
++.+||.||+++ ...|.-+. .+++- ++.++.|||+|+..|++||..|...-.-....+|.|+.+..
T Consensus 1 r~~~lE~qlkea---ae~ad~Ky----eEvaR-------~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~see 66 (155)
T 2efr_A 1 RMKQLEDKVEEL---LSKNYHLE----NEVAR-------LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAE 66 (155)
T ss_dssp CHHHHHHHHHHH---HHHHHHHH----HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH---HHHhHHHH----HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhh
Confidence 356788888877 33333333 24444 99999999999999999999999998888899999998877
Q ss_pred CcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHH
Q 006984 422 SNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELK 501 (623)
Q Consensus 422 ~deEk~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELe 501 (623)
..++|.+..|.|++.+..+|..|..=|+.+.+ .|..++.-|. +.|.++.....|.. .+.
T Consensus 67 kasqrEd~yEeqIk~L~~kLKEAE~RAE~AER-------sv~kLEk~id-------~lEd~L~~~Kek~~-------~i~ 125 (155)
T 2efr_A 67 KYSQKEDKYEEEIKVLSDKLKEAETRAEFAER-------SVTKLEKSID-------DLEDELYAQKLKYK-------AIS 125 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-------HHHHHHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-------HHHHHHHHHHHHHH-------HHH
Confidence 77888888888888888777777666666655 2334444444 44444444444555 666
Q ss_pred HHHHHHHhhHHHHHHHHH
Q 006984 502 NKQSFMRDKIKILESSLN 519 (623)
Q Consensus 502 EEL~~l~~~lksLE~sl~ 519 (623)
++|...-+.|.++.+.+.
T Consensus 126 ~eLd~tl~el~~~~~~~~ 143 (155)
T 2efr_A 126 EEMKQLEDKVEELLSKNY 143 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccchH
Confidence 666665555555544443
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.31 E-value=7e-07 Score=104.52 Aligned_cols=8 Identities=25% Similarity=0.688 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 006984 112 VERLLDTI 119 (623)
Q Consensus 112 le~~~~~l 119 (623)
|..+|++|
T Consensus 666 l~~L~~~l 673 (1184)
T 1i84_S 666 LTKLMTTL 673 (1184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444443
No 8
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=98.26 E-value=5.3e-06 Score=72.81 Aligned_cols=52 Identities=8% Similarity=0.279 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh-------HHHHHhHHHHHHHHHhH
Q 006984 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS-------QEQLNEMDNFIESLKES 384 (623)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes-------E~EVaaLerrIelLKEe 384 (623)
+.|+.+|++|++.+|++|+.++.+|..|+.+++.. +++|++|+|||++|+++
T Consensus 43 E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllEEe 101 (101)
T 3u1c_A 43 EDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVEEE 101 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 78999999999999999999999999999999875 67999999999999874
No 9
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.22 E-value=9.3e-07 Score=103.50 Aligned_cols=24 Identities=8% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 006984 540 MEMVMQLATQRELIQKQVYSLTSE 563 (623)
Q Consensus 540 E~lV~KL~~ErdrLe~ql~s~kee 563 (623)
+.-...|..+++.|..+|..+..-
T Consensus 1143 e~q~~~L~~ele~L~~~Ieel~~v 1166 (1184)
T 1i84_S 1143 EKQKRDLSEELEALKTELEDTLDT 1166 (1184)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 333445555555555555554443
No 10
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=98.10 E-value=1.4e-05 Score=67.47 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHhhh-------HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhH
Q 006984 338 TMKEKVKSLEEQLKESEIRLQNANACFQTS-------QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNL 407 (623)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEes-------E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNd 407 (623)
.+.+|+..|..+.+.+..++..+...+... +++|.+|+++|+.|+++++++++|+..|..||..++++++
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~~~ 79 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKAT 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999888888664 7799999999999999999999999999999999998765
No 11
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=98.03 E-value=1.7e-05 Score=69.32 Aligned_cols=52 Identities=13% Similarity=0.308 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh-------HHHHHhHHHHHHHHHhH
Q 006984 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS-------QEQLNEMDNFIESLKES 384 (623)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes-------E~EVaaLerrIelLKEe 384 (623)
+.++.+|++|++.+|++++.++.+|..++.+++.. +++|++|+|||++|+++
T Consensus 43 E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllEEe 101 (101)
T 3u59_A 43 EEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVEEE 101 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 68999999999999999999999999999888764 77999999999999874
No 12
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=97.59 E-value=0.0017 Score=60.64 Aligned_cols=141 Identities=24% Similarity=0.261 Sum_probs=95.4
Q ss_pred HHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHh
Q 006984 286 MLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQ 365 (623)
Q Consensus 286 l~gkLq~~qf~L~~s~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklE 365 (623)
|.-|++.++-+|.-+.-|=.....||..+.......+....-|+.. -..--+|+..||.+|++.......|
T Consensus 1 l~Rri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r----~~~deEr~~~lE~qLkeak~~aeea----- 71 (147)
T 2b9c_A 1 MNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESR----AQKDEEKMEIQEIQLKEAKHIAEDA----- 71 (147)
T ss_dssp ----------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hcccHHHHHHHHHHHHHHHHHHHHH-----
Confidence 3467888888888887777777777777765555444444444332 1122346666666666555544444
Q ss_pred hhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHH
Q 006984 366 TSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDL 437 (623)
Q Consensus 366 esE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa 437 (623)
........|++..++.++.+|+.|+..++++|..|...-.-....++.|+-.......|-+..|.+++..
T Consensus 72 --drKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L 141 (147)
T 2b9c_A 72 --DRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARL 141 (147)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTS
T ss_pred --HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHH
Confidence 4455578899999999999999999999999999999999888999999988776677777777777654
No 13
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=97.45 E-value=0.0012 Score=57.84 Aligned_cols=81 Identities=12% Similarity=0.158 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhH-------hhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHH
Q 006984 338 TMKEKVKSLEEQLKESEIRLQNANACF-------QTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELS 410 (623)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~akl-------EesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELe 410 (623)
...+|++.|-.+.+.+......+...+ ...+.+|++|+++|+.++.+++++++++..|..++....+...+.+
T Consensus 6 aIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE 85 (101)
T 3u1c_A 6 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAE 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777666666666655544444 3458899999999999999999999999999999999999999888
Q ss_pred HHhhhhhc
Q 006984 411 EEINFLKG 418 (623)
Q Consensus 411 relk~Les 418 (623)
.++..|--
T Consensus 86 ~ev~~L~R 93 (101)
T 3u1c_A 86 SEVASLNR 93 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887754
No 14
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.28 E-value=0.038 Score=71.34 Aligned_cols=181 Identities=12% Similarity=0.122 Sum_probs=120.9
Q ss_pred HHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHH
Q 006984 356 RLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLR 435 (623)
Q Consensus 356 QL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLK 435 (623)
.+..--.++.++.++|+.|+..+..++-.+..+...++....+...-+..+++-..... ..+.++.
T Consensus 1921 rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~--------------~~~~~~~ 1986 (3245)
T 3vkg_A 1921 HLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDAR--------------ELQVQLD 1986 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH
Confidence 34445556777788888888888888888887776666655555544444333222211 1111111
Q ss_pred HHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHH--HHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHH
Q 006984 436 DLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLI--EDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKI 513 (623)
Q Consensus 436 Ea~~QLqhA~asaEas~eqQ~mky~ei~dme~vI--EdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lks 513 (623)
+. ...+.+...+.+ +++..+. +=++.++..||.++..++.+.. +...+|+.+..++..
T Consensus 1987 ~~---~~ei~~~k~~~e----------~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~-------~~~~~L~~le~~l~~ 2046 (3245)
T 3vkg_A 1987 VR---NKEIAVQKVKAY----------ADLEKAEPTGPLREEVEQLENAANELKLKQD-------EIVATITALEKSIAT 2046 (3245)
T ss_dssp HH---HHHHHHHHHHHH----------HCC-------CHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHH----------HHHhhcCCCChHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 11 011111111111 1111111 5667788888888888888888 889999999999999
Q ss_pred HHHHHHHHhHHHHhh---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006984 514 LESSLNRANIEKAAS---AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEK 570 (623)
Q Consensus 514 LE~sl~kA~q~k~~t---lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ek 570 (623)
|+...+++..++..- ++....|-.-|++++..|..|+.|=..++..++..++.|...
T Consensus 2047 L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD 2106 (3245)
T 3vkg_A 2047 YKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGD 2106 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHH
Confidence 999999998888776 666777889999999999999999999999888877776544
No 15
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=96.99 E-value=0.0065 Score=52.97 Aligned_cols=81 Identities=16% Similarity=0.209 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhh-------HhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHH
Q 006984 339 MKEKVKSLEEQLKESEIRLQNANAC-------FQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (623)
Q Consensus 339 LqkKvksLE~qLdes~eQL~~A~ak-------lEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELer 411 (623)
..+|++.|-.+.+.+......+... .+..+.+|.+++++|+.++.++++++.++..+..++....+...+.+.
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~ 86 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEA 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456665555555555554444333 344588999999999999999999999999999999999999999999
Q ss_pred HhhhhhcC
Q 006984 412 EINFLKGN 419 (623)
Q Consensus 412 elk~Lesr 419 (623)
++..|--|
T Consensus 87 evasLnRr 94 (101)
T 3u59_A 87 EVASLNRR 94 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98877553
No 16
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=96.74 E-value=0.00079 Score=64.81 Aligned_cols=47 Identities=11% Similarity=0.123 Sum_probs=44.9
Q ss_pred HHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006984 529 AKEVNHRTK-------LMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (623)
Q Consensus 529 lKeae~Rak-------~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (623)
+|.+..|++ ++++.|++|++++|+|++.+..+|++|+.+.++||+|-
T Consensus 116 Lk~a~~paE~ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl 169 (175)
T 3mud_A 116 LEKVENPAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQTL 169 (175)
T ss_dssp CEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999 99999999999999999999999999999999999984
No 17
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.54 E-value=0.18 Score=49.87 Aligned_cols=144 Identities=14% Similarity=0.130 Sum_probs=87.3
Q ss_pred hhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhh-
Q 006984 288 GRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT- 366 (623)
Q Consensus 288 gkLq~~qf~L~~s~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEe- 366 (623)
-.||.+-..+.....+=..+...+......+......+..+. .++..+...++.+|.+++....++...+..+..
T Consensus 11 ~~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~----~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v 86 (256)
T 3na7_A 11 IEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLE----EEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEI 86 (256)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 345666666665555555566666666666555555555443 345555555666666665555555544444422
Q ss_pred --------hHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHH
Q 006984 367 --------SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLE 438 (623)
Q Consensus 367 --------sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~ 438 (623)
...+|..+.++|..+++++.....+.+.....+..+...-.++...+..++.. -+..+..++.++....
T Consensus 87 ~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~---~~~~~~e~~~e~~~l~ 163 (256)
T 3na7_A 87 KSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESL---VENEVKNIKETQQIIF 163 (256)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 25577777788888888888877777777777777777777776666665554 2344455555554443
No 18
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.16 E-value=0.55 Score=46.31 Aligned_cols=53 Identities=9% Similarity=0.167 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHH
Q 006984 340 KEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKV 399 (623)
Q Consensus 340 qkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKl 399 (623)
...+..++.++.....++..+ ..++.++++.|..++.++.....|......++
T Consensus 31 p~el~~le~~~~~l~~~~~~~-------~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 31 RKDLDKALNDKEAKNKAILNL-------EEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333 44444444444444444444444444444444
No 19
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=96.13 E-value=0.02 Score=48.18 Aligned_cols=71 Identities=15% Similarity=0.305 Sum_probs=49.3
Q ss_pred HHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHh
Q 006984 286 MLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQ 365 (623)
Q Consensus 286 l~gkLq~~qf~L~~s~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklE 365 (623)
+..|++.++.+.-.+.-|=..+..+|+.+. ....++ ++|+.+|++|++.||.+|+.++++|..|..+|+
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e-------~~~~~~----E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAE-------ERSKQL----EDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666665544444444444444333 322222 688999999999999999999999999999988
Q ss_pred hh
Q 006984 366 TS 367 (623)
Q Consensus 366 es 367 (623)
..
T Consensus 73 ea 74 (81)
T 1ic2_A 73 LA 74 (81)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 20
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.65 E-value=0.66 Score=45.18 Aligned_cols=71 Identities=17% Similarity=0.109 Sum_probs=37.5
Q ss_pred hhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006984 489 QCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL 567 (623)
Q Consensus 489 Kc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L 567 (623)
+|.-|=-.|-+|+-..+...+.+.++|..+++|-++..=-=-|+. + -..|..+++||.+++.-++.+...+
T Consensus 110 ~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~------E--Ke~l~~~~QRLkdE~rDLk~El~v~ 180 (189)
T 2v71_A 110 YVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD------E--KESLLVSVQRLKDEARDLRQELAVR 180 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H--HHHHHCCC-----------------
T ss_pred HHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH------H--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555567788888888999999999999988887654433333 2 2256677788888888777776654
No 21
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.59 E-value=0.55 Score=61.09 Aligned_cols=188 Identities=13% Similarity=0.123 Sum_probs=86.4
Q ss_pred HHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHH----HHh
Q 006984 308 KSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIES----LKE 383 (623)
Q Consensus 308 ~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIel----LKE 383 (623)
..|-+...++...-..=|+||.++ ...|..|++++...+.+|.+.......+-........++..-....+. +..
T Consensus 1909 ~~K~~el~~~~~rl~~GL~KL~et-~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~ 1987 (3245)
T 3vkg_A 1909 NEKRDQLEEEQLHLNIGLKKLRDT-EAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDV 1987 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555557778888887 778888888888887777776655433322222111111111111111 112
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHH---HHhhhHH
Q 006984 384 SLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQE---QQSMLYS 460 (623)
Q Consensus 384 el~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaEas~e---qQ~mky~ 460 (623)
+...+..+...|+..|..+.=+ .--.+++..+|.+|..++.+|..+++...+-+. +-...|+
T Consensus 1988 ~~~ei~~~k~~~e~dL~~A~Pa---------------~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~ 2052 (3245)
T 3vkg_A 1988 RNKEIAVQKVKAYADLEKAEPT---------------GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYA 2052 (3245)
T ss_dssp HHHHHHHHHHHHHHCC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCC---------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222233333333333332222 011234555566666655555544433222221 1111232
Q ss_pred HHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHH
Q 006984 461 AIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL 514 (623)
Q Consensus 461 ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksL 514 (623)
+... =.+.|+.++...+.|.+.|+.=+.+|+..+--=.+.+..+...++.|
T Consensus 2053 ~~~~---ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2053 TLIR---ETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhc
Confidence 2211 12233355555666666666666666666665555555555555544
No 22
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.92 E-value=1.8 Score=41.50 Aligned_cols=59 Identities=17% Similarity=0.244 Sum_probs=38.7
Q ss_pred cchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhh
Q 006984 423 NTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAES 481 (623)
Q Consensus 423 deEk~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~ 481 (623)
-++|+..||+||.|++..|..=.-.+.-...+|...--.++..+..+-||++++...+.
T Consensus 4 ~neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~ 62 (168)
T 3o0z_A 4 ANEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILEN 62 (168)
T ss_dssp ------CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999997776555555555556666666778888888888887665554
No 23
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=92.87 E-value=6.5 Score=38.27 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 006984 339 MKEKVKSLEEQLKESEIRLQNA 360 (623)
Q Consensus 339 LqkKvksLE~qLdes~eQL~~A 360 (623)
+..++..++..|+++.+.-..-
T Consensus 22 ~~q~~~~le~El~EFqesSrEL 43 (189)
T 2v71_A 22 YKQSFQEARDELVEFQEGSREL 43 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666655554433
No 24
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=92.51 E-value=2.5 Score=38.12 Aligned_cols=107 Identities=20% Similarity=0.250 Sum_probs=74.1
Q ss_pred HHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh---HHHHHHhHH
Q 006984 461 AIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNHRTK 537 (623)
Q Consensus 461 ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~t---lKeae~Rak 537 (623)
+++.+..=+..|+.++.+.+.+..-.|.+..-|...-..|...|..-+.++...+....+...++... ++++..|-+
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rle 93 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLE 93 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666777777777777777777775555555666666666666666666666665555543 778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006984 538 LMMEMVMQLATQRELIQKQVYSLTSENKLL 567 (623)
Q Consensus 538 ~aE~lV~KL~~ErdrLe~ql~s~keenK~L 567 (623)
-.++....|..+...|++++..+++...-+
T Consensus 94 eeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 94 DEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888887777665443
No 25
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.96 E-value=3.4 Score=48.94 Aligned_cols=70 Identities=16% Similarity=0.181 Sum_probs=36.1
Q ss_pred HhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHH
Q 006984 364 FQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQ 443 (623)
Q Consensus 364 lEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqh 443 (623)
++..+.+...++..+..|++++...+...+.+....+.+.+.+.++...+. +|+..|++.....+.|+..
T Consensus 972 le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~----------~kv~~L~~e~~~L~qq~~~ 1041 (1080)
T 2dfs_A 972 LRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE----------QLVSELKEQNTLLKTEKEE 1041 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 333344555555555555555555555555555555555555555543222 4566666555555444333
No 26
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=91.52 E-value=3.4 Score=37.19 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 006984 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (623)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELere 412 (623)
.....|..+...|..+......||+.-...+..++.-...|..+-..|+..+...++|+..-+..+..|+..-..+..+
T Consensus 34 ~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e 112 (129)
T 2fxo_A 34 ARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDE 112 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666677777777777777666666666666666655555666666555555555444444444433333333
No 27
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=91.36 E-value=5.4 Score=38.29 Aligned_cols=113 Identities=20% Similarity=0.201 Sum_probs=80.4
Q ss_pred cccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh-------HH
Q 006984 297 LNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS-------QE 369 (623)
Q Consensus 297 L~~s~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes-------E~ 369 (623)
+|..-+.|+|--.||+-.-..+. +--+.-+.-++.|++++..|+..-+..+-++....+.++.= ..
T Consensus 18 ~n~kLk~EsE~~~rlkK~~tEl~-------k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se 90 (168)
T 3o0z_A 18 ANDLLRTESDTAVRLRKSHTEMS-------KSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSE 90 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555544443332 22222356678899999999998888888887777777552 55
Q ss_pred HHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 006984 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 416 (623)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~L 416 (623)
-+++|+.+|..|..++.+.-.|...+......|.+--..++.+...+
T Consensus 91 ~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~ 137 (168)
T 3o0z_A 91 MIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNL 137 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 78899999999999999999999999888888877666666654433
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.09 E-value=3.4 Score=43.95 Aligned_cols=130 Identities=18% Similarity=0.209 Sum_probs=70.0
Q ss_pred hHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhh
Q 006984 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (623)
Q Consensus 367 sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~a 446 (623)
.++++..+...|+.|++++.+.+..+.....++.. .+..++.......+..+.+++.++..+.. +|..
T Consensus 454 l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~ 521 (597)
T 3oja_B 454 LEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDT----------NLRRYRLPKDGLARSSDNLNKVFTHLKER--QAFK 521 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHTTCCCCSSSCHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------hhhhcCccccccCCHHHHHHHHHHHHHhh--hhhh
Confidence 34566666677777777766665555555554332 22222221111122233344333333211 1111
Q ss_pred hhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHH
Q 006984 447 SSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNR 520 (623)
Q Consensus 447 saEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~k 520 (623)
. ..-++ ....+..+....+.++.+..+-|.+.+....+.. ++.+|+.-.+..++.|+..+.+
T Consensus 522 ~-~~~~~----~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~-------~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 522 L-RETQA----RRTEADAKQKETEDLEQENIALEKQLDNKRAKQA-------ELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp H-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTC-
T ss_pred H-HHHHH----HHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHH-------HHHHHHHHHHHHHHHHHHHhcC
Confidence 1 11111 2334555555666666777777777777777788 8888888888888888876654
No 29
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=91.01 E-value=0.18 Score=42.92 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006984 546 LATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (623)
Q Consensus 546 L~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (623)
.+++||+|++.|+..|++|+.+.++||+|-
T Consensus 42 ~EKTIDDLEDkL~~eKEK~k~i~eeLDqTL 71 (77)
T 3mtu_E 42 FVSEYNDLEEKVAHAKEENLNMHQMLDQTL 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 578999999999999999999999999984
No 30
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=88.00 E-value=6.6 Score=46.48 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=13.5
Q ss_pred ccccchhhh---hhHHHHHHHHH
Q 006984 52 DLAYSSEKL---VNLHVLLMYLL 71 (623)
Q Consensus 52 ~~a~~SEKl---~NL~~l~M~~~ 71 (623)
=+-|+-||| +|-|+|.++-.
T Consensus 453 cINy~NEkLQq~F~~~~f~~Eqe 475 (1080)
T 2dfs_A 453 CINYANEKLQQQFNMHVFKLEQE 475 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHhhHHHHH
Confidence 345778887 66677776654
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.40 E-value=18 Score=38.39 Aligned_cols=74 Identities=8% Similarity=0.102 Sum_probs=38.4
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhh---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 006984 499 ELKNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQ 572 (623)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~k~~t---lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld 572 (623)
.+.+++..+..+...++..+.+..+..... .+.++....-+++-...-...+.++..++...+.+.+.+.++++
T Consensus 506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 506 NLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556666666666655555544443333222 33333444444554445555555555666666666666555544
No 32
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=81.75 E-value=10 Score=32.28 Aligned_cols=28 Identities=32% Similarity=0.393 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhhhhhcC
Q 006984 392 AESAEEKVTQLTDTNLELSEEINFLKGN 419 (623)
Q Consensus 392 a~tAesKle~LseTNdELerelk~Lesr 419 (623)
+..|+.+|..|.....+|+..++.|..|
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~r 85 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKKL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888888888877654
No 33
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.29 E-value=47 Score=31.41 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=15.3
Q ss_pred HHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhh
Q 006984 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTD 404 (623)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~Lse 404 (623)
++..|...+..=...-..||.+....+..++.||.
T Consensus 59 e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTa 93 (154)
T 2ocy_A 59 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 93 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444555555555555443
No 34
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=74.94 E-value=10 Score=34.91 Aligned_cols=50 Identities=24% Similarity=0.295 Sum_probs=31.8
Q ss_pred HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhh
Q 006984 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 417 (623)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Le 417 (623)
+.++..+...|.+||.++..+..++..+..+++.+.+-+.+|.+.+.-|+
T Consensus 81 ~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 81 SLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666777777777777777776666666666666666555443
No 35
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=73.31 E-value=8.4 Score=34.96 Aligned_cols=101 Identities=27% Similarity=0.328 Sum_probs=49.9
Q ss_pred ccchhchhH-HHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHH
Q 006984 298 NGSLQRESE-LKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDN 376 (623)
Q Consensus 298 ~~s~~REse-l~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLer 376 (623)
+|+..-+.| +..-|+.-++.|. ..++.+....-.-+..|...|..||-+|++..-+.+.|....+....++..+.+
T Consensus 6 ~~~~~d~rD~~Ie~Lkreie~lk---~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 6 NGVNKDEKDHLIERLYREISGLK---AQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp ----CCTHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444434444 5555666665555 344544444458889999999999999999998888887776665555555533
Q ss_pred HHHHH---HhHHHhhhhhHHHHHHHHHH
Q 006984 377 FIESL---KESLYGAESRAESAEEKVTQ 401 (623)
Q Consensus 377 rIelL---KEel~rAEsRa~tAesKle~ 401 (623)
....- ...+..+|.|++.++.+...
T Consensus 83 ~~~~~~~~q~~~~e~E~kAqa~Eerf~K 110 (120)
T 3i00_A 83 QREDTEKAQRSLSEIERKAQANEQRYSK 110 (120)
T ss_dssp TCC-------------------------
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222 33345566666666555443
No 36
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=72.82 E-value=15 Score=33.01 Aligned_cols=57 Identities=18% Similarity=0.308 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh------------HHHHHhHHHHHHHHHhHHHhhh
Q 006984 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------------QEQLNEMDNFIESLKESLYGAE 389 (623)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes------------E~EVaaLerrIelLKEel~rAE 389 (623)
-+.+..|++-+...|.||-.+.-.|.+|....|.- .+.|++++..|.+||..+..+-
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999988777552 6689999999999998886553
No 37
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=71.60 E-value=18 Score=32.44 Aligned_cols=20 Identities=20% Similarity=0.554 Sum_probs=12.1
Q ss_pred hHHHHHhHHHHHHHHHhHHH
Q 006984 367 SQEQLNEMDNFIESLKESLY 386 (623)
Q Consensus 367 sE~EVaaLerrIelLKEel~ 386 (623)
+..+|..|.|.|+.|.-++.
T Consensus 34 ~k~Ei~elrr~iq~L~~el~ 53 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEID 53 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666655553
No 38
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=70.46 E-value=7.8 Score=32.22 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=42.6
Q ss_pred HHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006984 519 NRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKL 566 (623)
Q Consensus 519 ~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~ 566 (623)
-.+-++|..|+++++.+..-.+.....|..|.+.|..+|..+..+++.
T Consensus 21 RafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 21 RAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999999999998888765
No 39
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=69.82 E-value=44 Score=31.59 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=25.0
Q ss_pred HhhhhhhhHHHhhHHHhhhHHHHHhhhhhhhHHHHH
Q 006984 222 KSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFR 257 (623)
Q Consensus 222 kSla~eldLEkkL~~s~~~eeeLk~kL~~~eqe~~~ 257 (623)
.+|.+--+||..|..+|..-+..+.+++..+.....
T Consensus 10 ~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~ 45 (154)
T 2ocy_A 10 ESVDKQSHLEEQLNKSLKTIASQKAAIENYNQLKED 45 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777778888888877777777776666654443
No 40
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=69.12 E-value=49 Score=28.15 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=32.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006984 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL 567 (623)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L 567 (623)
...++.|.++++.-+..|....+.++.++..++.....+
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888999999888888888888888888877766553
No 41
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=68.85 E-value=10 Score=35.23 Aligned_cols=21 Identities=29% Similarity=0.272 Sum_probs=9.0
Q ss_pred HHHhhhhhHHHHHHHHHHHhh
Q 006984 384 SLYGAESRAESAEEKVTQLTD 404 (623)
Q Consensus 384 el~rAEsRa~tAesKle~Lse 404 (623)
.-..||++....+..++.||.
T Consensus 61 ~R~~aE~~~~~ie~ElE~LTa 81 (135)
T 2e7s_A 61 LRTKAEEEADKLNKEVEDLTA 81 (135)
T ss_dssp HHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 42
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=67.40 E-value=29 Score=36.12 Aligned_cols=71 Identities=25% Similarity=0.309 Sum_probs=43.8
Q ss_pred HHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhH
Q 006984 376 NFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSE 449 (623)
Q Consensus 376 rrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaE 449 (623)
++..+|..+|.+++-....++.+-.-...|..-|-.-|..-.+++ ..|+..||+++++.+.+|+.+.+-++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555554443333332 25888999999999888888776544
No 43
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=67.20 E-value=24 Score=30.15 Aligned_cols=55 Identities=15% Similarity=0.296 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh------------HHHHHhHHHHHHHHHhHHHhh
Q 006984 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------------QEQLNEMDNFIESLKESLYGA 388 (623)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEes------------E~EVaaLerrIelLKEel~rA 388 (623)
+.+..|++-+...|.||-.+.-.|..|....+.- .+.|++++..|..||..+..+
T Consensus 5 ~~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~ 71 (78)
T 2ic6_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADL 71 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999999999888777542 668999999999999887654
No 44
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=63.94 E-value=34 Score=31.46 Aligned_cols=54 Identities=11% Similarity=0.246 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhh
Q 006984 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESR 391 (623)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsR 391 (623)
.|...+..+++++-.+...|..++.+++....++..+.+.|..|..++-+.|+.
T Consensus 79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444445555566666666666666666666666666666666543
No 45
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=62.59 E-value=29 Score=31.10 Aligned_cols=19 Identities=16% Similarity=0.377 Sum_probs=8.9
Q ss_pred HHHHHhHHHHHHHHHhHHH
Q 006984 368 QEQLNEMDNFIESLKESLY 386 (623)
Q Consensus 368 E~EVaaLerrIelLKEel~ 386 (623)
..+|..|.|.|+.|.-++.
T Consensus 37 k~Ei~elrr~iq~L~~el~ 55 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQ 55 (131)
T ss_dssp ----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666666655543
No 46
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=62.36 E-value=29 Score=30.75 Aligned_cols=57 Identities=14% Similarity=0.276 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh------------HHHHHhHHHHHHHHHhHHHhhhh
Q 006984 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------------QEQLNEMDNFIESLKESLYGAES 390 (623)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEes------------E~EVaaLerrIelLKEel~rAEs 390 (623)
+.+..|++-+...|.||-.+.-.|..|....+.- .+.|++++..|..||..+..+-.
T Consensus 5 ~~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577889999999999999999999888777552 66899999999999988866543
No 47
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=61.45 E-value=8.5 Score=34.60 Aligned_cols=74 Identities=23% Similarity=0.303 Sum_probs=48.7
Q ss_pred HhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhh--hHHHHHhhcCChhHHHHHHHHHHHHHHHHHHH
Q 006984 279 LMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAK--DMVLQKLESTKNSEVLTMKEKVKSLEEQLKES 353 (623)
Q Consensus 279 L~g~skel~gkLq~~qf~L~~s~~REsel~sKL~~~~eqL~~k--~~~lekl~~s~esEv~sLqkKvksLE~qLdes 353 (623)
|.||-+-+.+-|+-+|-.++.-...=..-+-||++++.+-+.- +.....+.. +.++|..|+.|+..|..++.+.
T Consensus 26 ~~~~~~~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~-R~~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 26 FQGIDPFTMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQN-RRAAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555544444444567999999888864 333334444 4788999999988888887654
No 48
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=59.86 E-value=76 Score=28.68 Aligned_cols=82 Identities=24% Similarity=0.274 Sum_probs=50.1
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHH
Q 006984 468 LIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLA 547 (623)
Q Consensus 468 vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~ 547 (623)
.|.+|+..|.-||+-+..--..|- +|.+|+.-.+..+...+.--.++.--+.-|-.+=..|- +++
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~id-------elk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadRE--------kl~ 89 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELID-------KLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHARE--------KLV 89 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH--------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHH--------HHH
Confidence 466777777777776666666677 77777777666555544444455555555544444443 345
Q ss_pred HHHHHHHHHHHHHHHhh
Q 006984 548 TQRELIQKQVYSLTSEN 564 (623)
Q Consensus 548 ~ErdrLe~ql~s~keen 564 (623)
.+.++|..|+..+...|
T Consensus 90 ~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 90 EKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 56666666666655554
No 49
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=56.78 E-value=87 Score=26.21 Aligned_cols=36 Identities=11% Similarity=0.166 Sum_probs=29.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006984 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSEN 564 (623)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keen 564 (623)
...++.|.++++.-+..|....+.++.++..++...
T Consensus 67 ~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888899999888888888888888877766543
No 50
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=54.91 E-value=47 Score=30.15 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh------------HHHHHhHHHHHHHHHhHHHhhhh
Q 006984 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------------QEQLNEMDNFIESLKESLYGAES 390 (623)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEes------------E~EVaaLerrIelLKEel~rAEs 390 (623)
.+..|++-+...|.||-.+.-.|..|....+.- .+.|++++..|..||..+..+-.
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788889999999999999999887776542 66889999999999988765543
No 51
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=54.52 E-value=1.2e+02 Score=27.21 Aligned_cols=78 Identities=19% Similarity=0.277 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh----HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHH
Q 006984 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS----QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLE 408 (623)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes----E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdE 408 (623)
..|+..+...++.|+-+++....+-......+.+. ..++..++..|..|+..+.++....+.-...+..|-..-.-
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~ 116 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTR 116 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888887766544433222222222 44667777777777777777666555555555555444333
Q ss_pred HH
Q 006984 409 LS 410 (623)
Q Consensus 409 Le 410 (623)
|.
T Consensus 117 Ld 118 (131)
T 3tnu_A 117 LE 118 (131)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 52
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=54.32 E-value=4.8 Score=29.69 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 006984 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACF 364 (623)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~akl 364 (623)
+++..+.+|++.|+.+++.+++++..++..+
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667788888888888888888777776554
No 53
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=54.02 E-value=2e+02 Score=29.68 Aligned_cols=71 Identities=14% Similarity=0.282 Sum_probs=44.0
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHH
Q 006984 426 KVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQS 505 (623)
Q Consensus 426 k~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~ 505 (623)
....|.+||-+++.-+.++.+-|..... +|- ++.+-|-.|++.++.|.+..|..+. +||.+|.
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 460 (471)
T 3mq9_A 398 VTHLLQQELTEAQKGFQDVEAQAATANH-------TVM---ALMASLDAEKAQGQKKVEELEGEIT-------TLNHKLQ 460 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH---HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcch-------hHH---HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 4567778888887777766655544443 121 3334445788878877666666666 6666666
Q ss_pred HHHhhHHH
Q 006984 506 FMRDKIKI 513 (623)
Q Consensus 506 ~l~~~lks 513 (623)
..+..++.
T Consensus 461 ~~~~~~~~ 468 (471)
T 3mq9_A 461 DASAEVER 468 (471)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555543
No 54
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=53.59 E-value=31 Score=38.04 Aligned_cols=31 Identities=13% Similarity=0.166 Sum_probs=8.0
Q ss_pred HHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 006984 461 AIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (623)
Q Consensus 461 ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~ 491 (623)
+..+++.-...|+.++..|....+.+..+..
T Consensus 427 ~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l~ 457 (575)
T 2i1j_A 427 EVELKDSETRRLQEEVEDARRKQDEAAAALL 457 (575)
T ss_dssp ---------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455566666666655444444443
No 55
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=53.48 E-value=16 Score=31.32 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=49.3
Q ss_pred HHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHH--hhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhh
Q 006984 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEE--INFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (623)
Q Consensus 378 IelLKEel~rAEsRa~tAesKle~LseTNdELere--lk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~a 446 (623)
|+.|.+++..-|..+.+|..|++.++++..---.+ ...+..|. .=|..|+..|.+.+-||..+++
T Consensus 7 l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~----~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRR----AAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999999999999998876433222 23455553 3578888889888877776665
No 56
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=53.37 E-value=1.2e+02 Score=26.91 Aligned_cols=78 Identities=18% Similarity=0.280 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh----HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHH
Q 006984 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS----QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLE 408 (623)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes----E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdE 408 (623)
..|+..+...++.|+-+++....+-......+.+. ..++..++..|..|+..+.++....+.-...+..|-..-.-
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~ 114 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLA 114 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888876655533333333222 44677778888888887777766555555555555444333
Q ss_pred HH
Q 006984 409 LS 410 (623)
Q Consensus 409 Le 410 (623)
|.
T Consensus 115 Ld 116 (129)
T 3tnu_B 115 LD 116 (129)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 57
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=53.34 E-value=51 Score=28.29 Aligned_cols=59 Identities=22% Similarity=0.262 Sum_probs=45.2
Q ss_pred HHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHH
Q 006984 459 YSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESS 517 (623)
Q Consensus 459 y~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~s 517 (623)
.++|.-+.--|++||.+-......++.+-+....|...|..|.+|......|+.+|=.+
T Consensus 19 vdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 19 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677777778888888777666666666666678888889999999999888877433
No 58
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=50.29 E-value=17 Score=40.02 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=0.8
Q ss_pred HHHHHHHhHHHhhhhhHHHHHH
Q 006984 376 NFIESLKESLYGAESRAESAEE 397 (623)
Q Consensus 376 rrIelLKEel~rAEsRa~tAes 397 (623)
.++.+|.++..+||.-+..-+.
T Consensus 363 ~~~~~l~e~~~~~~~e~~~l~~ 384 (575)
T 2i1j_A 363 DMILRLEEQLRQLQAAKEELEQ 384 (575)
T ss_dssp HC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555544443333
No 59
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=49.08 E-value=18 Score=32.78 Aligned_cols=66 Identities=17% Similarity=0.196 Sum_probs=50.8
Q ss_pred HHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHH--hhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhh
Q 006984 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEE--INFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS 447 (623)
Q Consensus 378 IelLKEel~rAEsRa~tAesKle~LseTNdELere--lk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~as 447 (623)
|+.|.+++..-|..+.+|..|+..++++..---.+ .+.+..|. .=|..|+..|.+.+-||..++++
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~----~~Vs~lq~KiaeLKrqLAd~va~ 91 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDRE----GVAVSIQAKIDELKRQLADRIAT 91 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999998876433222 23456653 35788999999998888777763
No 60
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=47.12 E-value=21 Score=31.54 Aligned_cols=66 Identities=15% Similarity=0.203 Sum_probs=50.1
Q ss_pred HHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHH--hhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhh
Q 006984 377 FIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE--INFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (623)
Q Consensus 377 rIelLKEel~rAEsRa~tAesKle~LseTNdELere--lk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~a 446 (623)
-|+.|.+++..-|..+..|..|+..++.+..---.+ ...+..|. .=|..|+..|.+.+-||..+++
T Consensus 6 ~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~----~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRR----AAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 378899999999999999999999998876433222 23456653 3578889999988877777766
No 61
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=47.04 E-value=64 Score=25.52 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=19.4
Q ss_pred HHHHHhHHHHHHHHHhHHHhhhhhHHH
Q 006984 368 QEQLNEMDNFIESLKESLYGAESRAES 394 (623)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~t 394 (623)
.++|.++..-|+-.|++..||=.|+.+
T Consensus 24 ssdV~al~~~v~~ak~eA~RAN~RlDN 50 (52)
T 1jcd_A 24 SNDANAARSDAQAAKDDAARANQRADN 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 345666666777888888888888764
No 62
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=46.21 E-value=1.8e+02 Score=26.69 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 006984 339 MKEKVKSLEEQLKESEIRLQNAN 361 (623)
Q Consensus 339 LqkKvksLE~qLdes~eQL~~A~ 361 (623)
.+.....|+.+|..+++-|..+.
T Consensus 23 CrN~T~lLq~qLTqAQe~l~~~e 45 (121)
T 3mq7_A 23 ARNVTHLLQQELTEAQKGFQDVE 45 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777777666665554
No 63
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=43.11 E-value=2.4e+02 Score=28.31 Aligned_cols=60 Identities=23% Similarity=0.313 Sum_probs=42.9
Q ss_pred HHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhh
Q 006984 99 DLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVL 178 (623)
Q Consensus 99 DlL~gildsEv~ele~~~~~lq~~I~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~~e~~~ei~~qsa~f~r~~ 178 (623)
.+|++|||.=|.....+++.|..+|...+..+..... +..-.++..+|++...|.|.+
T Consensus 156 ~ll~~lld~ivd~~~~~l~~l~~~i~~lE~~l~~~~~----------------------~~~l~~l~~lrr~l~~lrr~l 213 (339)
T 4ev6_A 156 FLLYHILNEITRSYSRILMNLEDELEELEDKLLAGYD----------------------REVMEKILGLRKTLVYFHKSL 213 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCC----------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh----------------------hhHHHHHHHHHHHHHHHHHHh
Confidence 4788999988888888888888888777776654332 122345667777777787777
Q ss_pred hh
Q 006984 179 SY 180 (623)
Q Consensus 179 ~~ 180 (623)
.+
T Consensus 214 ~~ 215 (339)
T 4ev6_A 214 IA 215 (339)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 64
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=42.85 E-value=1.9e+02 Score=26.02 Aligned_cols=33 Identities=12% Similarity=0.199 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHH
Q 006984 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQ 370 (623)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~E 370 (623)
.|+.++..||..-|+++-+--.+.++++..++.
T Consensus 53 ~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k 85 (111)
T 2v66_B 53 QLHKYVRELEQANDDLERAKRATIVSLEDFEQR 85 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHH
Confidence 344444444444444444444444444333333
No 65
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=42.18 E-value=55 Score=27.49 Aligned_cols=48 Identities=13% Similarity=0.021 Sum_probs=36.1
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006984 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (623)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (623)
-+-+++.|.-|-+++|..|...+=+-+.+|..+....+.|.+++....
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356778888888888888888888888888888888888888777654
No 66
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=40.86 E-value=1.7e+02 Score=25.72 Aligned_cols=88 Identities=24% Similarity=0.249 Sum_probs=50.5
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHH
Q 006984 469 IEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLAT 548 (623)
Q Consensus 469 IEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ 548 (623)
|++|+..+.-||+-+-+-...|- +|.+++.-.+..+...+.--.++.--+.-|-.+=..|- +++.
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id-------~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadRE--------kl~~ 68 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELID-------KLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHARE--------KLVE 68 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHh
Confidence 44555666666554444444555 66666666665555555555555555666655555553 4566
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHH
Q 006984 549 QRELIQKQVYSLTSENKLLVEKL 571 (623)
Q Consensus 549 ErdrLe~ql~s~keenK~L~ekl 571 (623)
+.++|..++..+...|..|+..+
T Consensus 69 eKe~L~~ql~~lq~q~~~L~~~~ 91 (94)
T 3jsv_C 69 KKEYLQEQLEQLQREFNKLKVGC 91 (94)
T ss_dssp TTSHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 77888888888877777766543
No 67
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=40.82 E-value=68 Score=27.83 Aligned_cols=64 Identities=11% Similarity=0.155 Sum_probs=30.6
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHH
Q 006984 329 ESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQL 402 (623)
Q Consensus 329 ~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~L 402 (623)
|++++..+..|+.+..+||+++.+++.+.... ++.++..|..|+..+.++....+.-...+..|
T Consensus 7 ~~~~~~~~~~Lq~~~~~LE~~l~e~E~~~~~e----------~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~L 70 (95)
T 3mov_A 7 HSSRENLYFQGQKESRACLERIQELEDLLAKE----------KDNSRRMLTDKEREMAEIRDQMQQQLNDYEQL 70 (95)
T ss_dssp -----------CCCCHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888888888888887765433 34455555555555554444333333333333
No 68
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=39.41 E-value=2.2e+02 Score=25.76 Aligned_cols=52 Identities=23% Similarity=0.269 Sum_probs=34.5
Q ss_pred hHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 006984 305 SELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRL 357 (623)
Q Consensus 305 sel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL 357 (623)
.+|+.+|..+++.|..+.....+|... ..-...-.+.|.-|+.|.+-|..--
T Consensus 27 ~~L~~~L~~AEeaL~~Kq~~idelk~e-i~q~~~~lE~I~vLkaQv~IY~~DF 78 (110)
T 2v4h_A 27 EDLRQQLQQAEEALVAKQELIDKLKEE-AEQHKIVMETVPVLKAQADIYKADF 78 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999888777777664 1112222246666677777666553
No 69
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=38.34 E-value=4.6e+02 Score=29.23 Aligned_cols=265 Identities=8% Similarity=0.075 Sum_probs=127.3
Q ss_pred hHHhHHHHHHHHHhhhhccccee------ccccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhc
Q 006984 108 ELREVERLLDTIHVEIVNVHHKI------SSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYF 181 (623)
Q Consensus 108 Ev~ele~~~~~lq~~I~~~~~~~------~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~~e~~~ei~~qsa~f~r~~~~~ 181 (623)
|+..++..+.+|+..+....... +.+..+...+-.+ +....+.+..|.....+...+-....+|++....+
T Consensus 306 e~~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~w~~L---~~~~~~r~~~l~~~~~R~~~Le~l~~~F~~~~~~~ 382 (863)
T 1sjj_A 306 EKCQLEINFNTLQTKLRLSNRPAFMPSEGKMVSDINNAWGGL---EQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIH 382 (863)
T ss_dssp HHHHHHHTTTHHHHHTTTTSSCCCCCSTTSCGGGHHHHHHHH---HHHHTTTHHHHHHHHEEHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666677776665433321 1222223322222 33333333433332222222223457788887777
Q ss_pred ccCCCcccccccccCCcccccccccccchHHHHHHHHHHHHhhhhhhhHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHH
Q 006984 182 IHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEA 261 (623)
Q Consensus 182 ~~~~~~~~~~~~e~~~~~~~~~~~~mqt~eqqR~iLrMLekSla~eldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~ 261 (623)
..|-.+....+.. ..+++ ..+.++..+..-...++..|+. .+..+.......++|...=|+.. ..+..-
T Consensus 383 ~~Wl~~~e~~l~~-~~~g~----~dl~~v~~ll~kh~~f~~el~~---~~~~v~~l~~~~~~L~~~~~~~~---~~I~~~ 451 (863)
T 1sjj_A 383 ESWTDGKEAMLQQ-KDYET----ATLSEIKALLKKHEAFESDLAA---HQDRVEQIAAIAQELNELDYYDS---PSVNAR 451 (863)
T ss_dssp HHHHHHHHHHHHS-CTTTS----SCHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTCCTTH---HHHHHH
T ss_pred HHHHHHHHHHhhc-ccccC----CCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCcccH---HHHHHH
Confidence 7776655544443 22322 1233444444445666666654 34555555556666654333322 233444
Q ss_pred HHHHHHHHHhccchHHHHhhhhHHHHhhhh---HH--hhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHH
Q 006984 262 AEVVWGRFLEAENSAEVLMGISKEMLGRFQ---IV--QFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEV 336 (623)
Q Consensus 262 ~~~~~er~~EAENa~EvL~g~skel~gkLq---~~--qf~L~~s~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv 336 (623)
...+..||-.=-.+++-=+..+...+..++ .. ||.-.+ .++.+=+...++.|...+ + ....+++
T Consensus 452 ~~~l~~~W~~L~~~~~~R~~~L~~~l~~~q~~~~l~~~f~~~a-----~~~~~Wl~~~e~~l~~~~-----~-g~dl~~v 520 (863)
T 1sjj_A 452 CQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRA-----APFNNWMEGAMEDLQDTF-----I-VHTIEEI 520 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TTTHHHHHHHHHHHHCCC-----C-CSSSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcchH-----h-hccHHHH
Confidence 444444543222222222222222222222 11 332222 234445555555554322 1 1245779
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH---hhHhhh---------------HHHHHhHHHHHHHHHhHHHhhhhhHHHHHH
Q 006984 337 LTMKEKVKSLEEQLKESEIRLQNAN---ACFQTS---------------QEQLNEMDNFIESLKESLYGAESRAESAEE 397 (623)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~~A~---aklEes---------------E~EVaaLerrIelLKEel~rAEsRa~tAes 397 (623)
..|.+|...++.++......+.... ..+... ...+..+..+-+.|.+-+..=..|++.+..
T Consensus 521 e~ll~kh~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~rw~~L~~~~~~R~~~L~~~l~ 599 (863)
T 1sjj_A 521 QGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEEHA 599 (863)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCSCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHGGGHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988765543322 222110 113456666666776666666666666653
No 70
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=38.11 E-value=47 Score=32.48 Aligned_cols=44 Identities=23% Similarity=0.439 Sum_probs=18.1
Q ss_pred HHHHhhhhHHHHHhhcC----------ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006984 315 IEQLKAKDMVLQKLEST----------KNSEVLTMKEKVKSLEEQLKESEIRLQ 358 (623)
Q Consensus 315 ~eqL~~k~~~lekl~~s----------~esEv~sLqkKvksLE~qLdes~eQL~ 358 (623)
.+||+..+...++|..- ++.|+..|++++.+++.+.+.++.++.
T Consensus 12 q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~ 65 (190)
T 4emc_A 12 KQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTS 65 (190)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 44555555544444331 345555555555555555555554443
No 71
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=38.03 E-value=1.9e+02 Score=29.39 Aligned_cols=108 Identities=16% Similarity=0.230 Sum_probs=71.1
Q ss_pred hhhhHHHHHHHHHhhcCCccccccCCCccchHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchhh
Q 006984 59 KLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLRE 138 (623)
Q Consensus 59 Kl~NL~~l~M~~~~~~~~~E~~~~~~~~i~~~s~eka~efDlL~gildsEv~ele~~~~~lq~~I~~~~~~~~s~~~~~~ 138 (623)
|..=||.++..+.....++-.+..+-. +|++|--.|+ .-|.+++..|.+=+..++.++..... ..+.+.
T Consensus 176 k~TLLh~lv~~~~~~~p~l~~f~~eL~-----~v~~Askvs~--~~l~~~l~~l~~~~~~~~~~l~~~~~----~~~~~d 244 (340)
T 1v9d_A 176 KMTLLHFLAELCENDHPEVLKFPDELA-----HVEKASRVSA--ENLQKSLDQMKKQIADVERDVQNFPA----ATDEKD 244 (340)
T ss_dssp TSBHHHHHHHHHHHSCCTTSSGGGGCT-----THHHHHHCCH--HHHHHHHHHHHHHHHHHHHHHHTCCC----CSSSSC
T ss_pred CccHHHHHHHHHHHhCchhccchhHHH-----hHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHhccc----ccchhH
Confidence 444578888888777777766665433 3555554442 33567888888888888887765422 122345
Q ss_pred HHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcc
Q 006984 139 VFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFI 182 (623)
Q Consensus 139 ~f~~~~~~~~kL~~~~~sLkq~~e~~~ei~~qsa~f~r~~~~~~ 182 (623)
.|... |..-+.+++..+..++.+...+. ..|..+..+|.
T Consensus 245 ~f~~~--m~~Fl~~a~~~~~~l~~~~~~~~---~~~~~l~~yfg 283 (340)
T 1v9d_A 245 KFVEK--MTSFVKDAQEQYNKLRMMHSNME---TLYKELGDYFV 283 (340)
T ss_dssp CHHHH--HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHTT
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhC
Confidence 56532 47888899988888888877775 45777777775
No 72
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=37.74 E-value=1.4e+02 Score=22.96 Aligned_cols=50 Identities=18% Similarity=0.156 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHH
Q 006984 336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL 385 (623)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel 385 (623)
+..++.++...+..++.....+..++.++....+.+......|..++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555455555555555555555544455555555555444433
No 73
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=37.41 E-value=1.9e+02 Score=24.44 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006984 538 LMMEMVMQLATQRELIQKQVYSLT 561 (623)
Q Consensus 538 ~aE~lV~KL~~ErdrLe~ql~s~k 561 (623)
-+++.+.+|......|+.+|.-+.
T Consensus 60 eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 60 QLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666665443
No 74
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=37.22 E-value=1.5e+02 Score=25.43 Aligned_cols=29 Identities=34% Similarity=0.355 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHhhhhhcC
Q 006984 391 RAESAEEKVTQLTDTNLELSEEINFLKGN 419 (623)
Q Consensus 391 Ra~tAesKle~LseTNdELerelk~Lesr 419 (623)
|+++=..|.--|++.|..|+.++..+.++
T Consensus 17 RlAsyIdKVR~LEqqN~~Le~~i~~l~~~ 45 (93)
T 3s4r_A 17 RFANLIDKVRFLEQQNKILLAELEQLKGQ 45 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444555555555555555555555443
No 75
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=37.17 E-value=1.3e+02 Score=23.56 Aligned_cols=44 Identities=14% Similarity=0.258 Sum_probs=34.5
Q ss_pred HHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006984 519 NRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTS 562 (623)
Q Consensus 519 ~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~ke 562 (623)
.+.-++|..|..+++.+.+..+.--..|..++..|..++..++.
T Consensus 14 ~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 14 SRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557888888888888888888888888888888887776653
No 76
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=36.07 E-value=1.5e+02 Score=26.27 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006984 540 MEMVMQLATQRELIQKQVYSL 560 (623)
Q Consensus 540 E~lV~KL~~ErdrLe~ql~s~ 560 (623)
+..+.+|+.|+++|...+..+
T Consensus 74 ~~~~e~Lq~E~erLr~~v~~l 94 (100)
T 1go4_E 74 REDHSQLQAECERLRGLLRAM 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888888777654
No 77
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=35.44 E-value=3.5e+02 Score=29.52 Aligned_cols=29 Identities=10% Similarity=0.196 Sum_probs=14.3
Q ss_pred HHHHHHhHHHhhhhhHHHHHHHHHHHhhh
Q 006984 377 FIESLKESLYGAESRAESAEEKVTQLTDT 405 (623)
Q Consensus 377 rIelLKEel~rAEsRa~tAesKle~LseT 405 (623)
.|+.||..+...+.+..+|......+...
T Consensus 101 ~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~s 129 (464)
T 1m1j_B 101 VLRDLKDRVAKFSDTSTTMYQYVNMIDNK 129 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 35555555555555554444444444333
No 78
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=35.13 E-value=1e+02 Score=30.19 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=27.1
Q ss_pred hhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhH
Q 006984 478 KAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANI 523 (623)
Q Consensus 478 rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q 523 (623)
.+++|.+.++.=+.-|.-.|.-|+++|......++.|..++..+..
T Consensus 10 ~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~ 55 (190)
T 4emc_A 10 SVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNA 55 (190)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888888888888888888888888877777777766655443
No 79
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=35.10 E-value=1.1e+02 Score=28.07 Aligned_cols=70 Identities=24% Similarity=0.295 Sum_probs=39.0
Q ss_pred HHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhh
Q 006984 374 MDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (623)
Q Consensus 374 LerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~a 446 (623)
-.+...+|+..+-+|+.-+..++..-.--..|..-|..-|+..+.++ -.++.-|++.++..+.+|+.|-+
T Consensus 23 CrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~vqeLqgEI~~Lnq~Lq~a~a 92 (121)
T 3mq7_A 23 ARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQDASA 92 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666555555555555555555444443 24556666666666655555543
No 80
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=34.24 E-value=1.5e+02 Score=25.57 Aligned_cols=32 Identities=28% Similarity=0.349 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHh
Q 006984 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQ 365 (623)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklE 365 (623)
-|+..|.-||..+|++--.|+-.|..+++.+-
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~ 57 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKAEVA 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 57888999999999999999988888875543
No 81
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=33.97 E-value=1.6e+02 Score=25.48 Aligned_cols=69 Identities=16% Similarity=0.209 Sum_probs=50.4
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006984 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL 567 (623)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L 567 (623)
+.++-|..+++.+..||.-+...+...--|..++-.=-.-.=.+-.-|+..+..||..+-.+|+.|..+
T Consensus 16 ~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~ 84 (93)
T 3t98_B 16 QFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSY 84 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777788888888887776654333334455544455555677789999999999999999999875
No 82
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=33.91 E-value=1.3e+02 Score=25.24 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHH
Q 006984 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAE 393 (623)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~ 393 (623)
|+..|-.+|..||.++...+.++.+...-. ..-..++.+..++..++.++..+..|=.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~-~d~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFS-QPHEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGG-SCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777766543211 1134666777777777777777777654
No 83
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=32.04 E-value=1.9e+02 Score=24.27 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=21.5
Q ss_pred HHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006984 325 LQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNA 360 (623)
Q Consensus 325 lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A 360 (623)
.++|... +.+...|.++|..+|.++..+...=...
T Consensus 6 ~~kLq~~-E~~N~~Le~~v~~le~~Le~s~~~q~~~ 40 (72)
T 3cve_A 6 HMKLQEV-EIRNKDLEGQLSEMEQRLEKSQSEQDAF 40 (72)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 5666677777777777777776543333
No 84
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=30.83 E-value=2.4e+02 Score=23.65 Aligned_cols=33 Identities=21% Similarity=0.123 Sum_probs=30.2
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006984 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSL 560 (623)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~ 560 (623)
-|+-+-.|.++.|..+.++...+..|+.|+.++
T Consensus 46 ~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~i 78 (79)
T 4abm_A 46 AALQALKRKKRYEKQLAQIDGTLSTIEFQREAL 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 388899999999999999999999999999875
No 85
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=30.15 E-value=16 Score=26.95 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=25.2
Q ss_pred HHHHhHHHHHHHHHhHHHhhhhhHHHHHHHH
Q 006984 369 EQLNEMDNFIESLKESLYGAESRAESAEEKV 399 (623)
Q Consensus 369 ~EVaaLerrIelLKEel~rAEsRa~tAesKl 399 (623)
+.+.++.++|+-|+.+.+.|+.|+..+..++
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567899999999999999999998876554
No 86
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=30.12 E-value=1.9e+02 Score=26.13 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhhhhhh
Q 006984 473 KSKVSKAESKTESVEEQCI 491 (623)
Q Consensus 473 k~Kl~rAE~RaE~aEsKc~ 491 (623)
+.++..+|.||...|.+..
T Consensus 91 q~~~~e~E~kAqa~Eerf~ 109 (120)
T 3i00_A 91 QRSLSEIERKAQANEQRYS 109 (120)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555556555555554
No 87
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=30.02 E-value=1.4e+02 Score=23.00 Aligned_cols=40 Identities=23% Similarity=0.342 Sum_probs=28.3
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 006984 527 ASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (623)
Q Consensus 527 ~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~ 573 (623)
.|+-+++.|++-.+ .....|+..|+++.-+|.+|-+.+++
T Consensus 3 aYl~eLE~r~k~le-------~~naeLEervstLq~EN~mLRqvl~n 42 (42)
T 2oqq_A 3 AYLSELENRVKDLE-------NKNSELEERLSTLQNENQMLRHILKN 42 (42)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHhcC
Confidence 47777887766544 44455667788888889888776653
No 88
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=29.33 E-value=5e+02 Score=27.91 Aligned_cols=55 Identities=16% Similarity=0.126 Sum_probs=30.4
Q ss_pred HHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHH
Q 006984 461 AIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILE 515 (623)
Q Consensus 461 ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE 515 (623)
.|+.+..+|+++..|..|-|.-.+..-.=|.+=-.-++++.=.+..|.+-.|.|+
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL~ 189 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQLE 189 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHHHH
Confidence 4666666666666666666655544444455333334444444666665555544
No 89
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=29.32 E-value=2.6e+02 Score=23.66 Aligned_cols=30 Identities=27% Similarity=0.230 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006984 546 LATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (623)
Q Consensus 546 L~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (623)
=.+-.+||.|+|-++.-+|+.|.++|....
T Consensus 44 k~kd~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 44 KNKNTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 346789999999999999999999998664
No 90
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=29.11 E-value=1.6e+02 Score=22.78 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhH
Q 006984 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKES 384 (623)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEe 384 (623)
++.+||..||.-++..+..+..--+. ..+-..-|..||..|+..
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae---~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAE---YNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhc
Confidence 46788888888888888877766444 334444566777776654
No 91
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=28.80 E-value=94 Score=32.32 Aligned_cols=50 Identities=18% Similarity=0.200 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhh
Q 006984 340 KEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAE 389 (623)
Q Consensus 340 qkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAE 389 (623)
++|++.+.+++..++..+..+...+...+..+..++.+|+.|+.+|..-+
T Consensus 4 ~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 4 QKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554544444444344444455555555555444333
No 92
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=28.65 E-value=1.9e+02 Score=25.54 Aligned_cols=78 Identities=24% Similarity=0.254 Sum_probs=46.8
Q ss_pred hHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhH-------hhHhhhHHHHHhHHHH
Q 006984 305 SELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNAN-------ACFQTSQEQLNEMDNF 377 (623)
Q Consensus 305 sel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~-------aklEesE~EVaaLerr 377 (623)
.+|..+|..+++-|..+...+.+|... ..-.....+.+.-|..|.+-|..--..=. ..-+....+++.|.+.
T Consensus 5 ~~L~~~L~~aEeaL~~kq~~id~lke~-~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 5 EDLRQQLQQAEEALVAKQELIDKLKEE-AEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 378899999999999998888888775 33333444667777777777665543222 2222224455555555
Q ss_pred HHHHHh
Q 006984 378 IESLKE 383 (623)
Q Consensus 378 IelLKE 383 (623)
+..|+.
T Consensus 84 ~~~L~~ 89 (94)
T 3jsv_C 84 FNKLKV 89 (94)
T ss_dssp TC----
T ss_pred HHHHHH
Confidence 555544
No 93
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=28.06 E-value=2.5e+02 Score=26.13 Aligned_cols=114 Identities=21% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHhhhhhHhHHHHHhhhHH-HHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHH
Q 006984 440 QLQQAKVSSEASQEQQSMLYS-AIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSL 518 (623)
Q Consensus 440 QLqhA~asaEas~eqQ~mky~-ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl 518 (623)
.||++ +++++..+++--.+. +|.+.. +++.++++ ..++.=..-.+.-|..|++-|.-|+.|+.-= +.|...|
T Consensus 33 ~le~s-assDa~vrq~Ia~LP~eVsd~s-~l~klkDk-~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR----~~L~~~L 105 (152)
T 4fla_A 33 DLENA-ASGDATVRQKIASLPQEVQDVS-LLEKITDK-EAAERLSKTVDEACLLLAEYNGRLAAELEDR----RQLARML 105 (152)
T ss_dssp HHHHH-HHHHHHHHHHHHTSCGGGTCGG-GGGGCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred Hhhcc-ccchHHHHHHHHcCCccccCHH-HHHHcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q ss_pred HHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006984 519 NRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSL 560 (623)
Q Consensus 519 ~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~ 560 (623)
..+..--..-+.+++.+.+.-.+-..++..-+-.|...+.++
T Consensus 106 ~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~sL 147 (152)
T 4fla_A 106 VEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSL 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 94
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=27.46 E-value=2.4e+02 Score=31.51 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=15.5
Q ss_pred hhhhhhHHHhhHHHhhhHHHH
Q 006984 224 LARELDLEKKISELNQNEEQL 244 (623)
Q Consensus 224 la~eldLEkkL~~s~~~eeeL 244 (623)
+--|.||-+.|++.++..+++
T Consensus 56 dkqErDltkrINELKnqLEdl 76 (562)
T 3ghg_A 56 DEVNQDFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHTHH
T ss_pred HhhcCcHHHHHHHHHHHHHHH
Confidence 345778888888877777777
No 95
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=26.70 E-value=3.5e+02 Score=24.33 Aligned_cols=72 Identities=15% Similarity=0.152 Sum_probs=33.0
Q ss_pred hccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006984 493 LSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKL 571 (623)
Q Consensus 493 Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekl 571 (623)
+.+.+-+=.-++..|..++..-|..|...-+.=. .-..-+.+-+.+|...|+++..+|..+..+|-.|..+.
T Consensus 36 w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fs-------q~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~Gk~ 107 (112)
T 1x79_B 36 IKQSSEDSSHQISALVLRAQASEILLEELQQGLS-------QAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGKH 107 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhh
Confidence 3444444455555665555555554443322111 11234567788999999999999999999998887664
No 96
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.36 E-value=2.9e+02 Score=23.28 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=10.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHHH
Q 006984 499 ELKNKQSFMRDKIKILESSLNR 520 (623)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~k 520 (623)
+|......++++++.++..+..
T Consensus 21 ~L~~~~~~l~~~i~~l~~~l~~ 42 (112)
T 1l8d_A 21 EITQRIGELKNKIGDLKTAIEE 42 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 97
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.27 E-value=4.4e+02 Score=29.51 Aligned_cols=41 Identities=7% Similarity=0.044 Sum_probs=27.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HhhhHHHHHHhhc
Q 006984 534 HRTKLMMEMVMQLATQRELIQKQVYSLT-----------------SENKLLVEKLQYS 574 (623)
Q Consensus 534 ~Rak~aE~lV~KL~~ErdrLe~ql~s~k-----------------eenK~L~ekld~t 574 (623)
.+..+....|..+-.++.|||..|..-. +-|..+...|.|.
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv 188 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQV 188 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHH
Confidence 4556666667777778888888887643 3466666666665
No 98
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=26.23 E-value=2.1e+02 Score=29.80 Aligned_cols=106 Identities=10% Similarity=0.096 Sum_probs=68.2
Q ss_pred HHHHHHHHHhhcCCccccccCCCccchHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccc--cchhhHH
Q 006984 63 LHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSC--KHLREVF 140 (623)
Q Consensus 63 L~~l~M~~~~~~~~~E~~~~~~~~i~~~s~eka~efDlL~gildsEv~ele~~~~~lq~~I~~~~~~~~s~--~~~~~~f 140 (623)
||.++..+.....++-.+..+- .+|++|--.|+ .-|.++|++|.+=+..++.++.... ++.+ .|.+..|
T Consensus 261 Lh~l~~~v~~~~p~l~~f~~eL-----~~v~~Aakv~~--~~l~~d~~~L~~~l~~v~~~l~~~~--~s~~~~~~~~d~f 331 (411)
T 1ux5_A 261 LNYVEKIVRLNYPSFNDFLSEL-----EPVLDVVKVSI--EQLVNDCKDFSQSIVNVERSVEIGN--LSDSSKFHPLDKV 331 (411)
T ss_dssp HHHHHHHHHHHCGGGGGHHHHT-----HHHHHHTTCCH--HHHHHHHHHHHHHHHHHHHHHHHST--TTCTTSSCTTCCH
T ss_pred HHHHHHHHHHhCcccccccchh-----hhHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHhcc--CCcccccCcccHH
Confidence 7777777777766666554432 34555544332 3456889999999999998886422 2221 1334445
Q ss_pred HHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcc
Q 006984 141 TIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFI 182 (623)
Q Consensus 141 ~~~~~~~~kL~~~~~sLkq~~e~~~ei~~qsa~f~r~~~~~~ 182 (623)
.. .|..-+..++..+...++++..+.. .|..+..+|.
T Consensus 332 ~~--~~~~fl~~a~~~~~~l~~~~~~~~~---~~~~l~~yfg 368 (411)
T 1ux5_A 332 LI--KTLPVLPEARKKGDLLEDEVKLTIM---EFESLMHTYG 368 (411)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHTT
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhC
Confidence 53 2367788888888888887776654 6777777775
No 99
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=26.11 E-value=3.1e+02 Score=23.48 Aligned_cols=64 Identities=19% Similarity=0.216 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHH
Q 006984 336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKV 399 (623)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKl 399 (623)
+..+-+.+..|.-++++..++-.......++..+....+.+.|+-|+++...=++|+..-..|.
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344455555555555555554444444444555566677777777777777777766655553
No 100
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=26.08 E-value=60 Score=25.52 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=24.7
Q ss_pred hhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHH
Q 006984 483 TESVEEQCIVLSEDNFELKNKQSFMRDKIKILESS 517 (623)
Q Consensus 483 aE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~s 517 (623)
.+..|.++..|+..|.+|..++..++..+..|...
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556677777888888888888877776543
No 101
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=25.27 E-value=1.9e+02 Score=22.78 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=30.4
Q ss_pred HHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006984 518 LNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLT 561 (623)
Q Consensus 518 l~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~k 561 (623)
..+.-++|-.+..+++.+.+..+.-...|..++..|..++..++
T Consensus 13 A~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 13 ASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555777778888877777777777777777777766666554
No 102
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=25.23 E-value=3.5e+02 Score=24.44 Aligned_cols=63 Identities=19% Similarity=0.234 Sum_probs=40.8
Q ss_pred HHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhh
Q 006984 407 LELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAE 480 (623)
Q Consensus 407 dELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE 480 (623)
.|+..-.+.|++. +..+|-+|.+. +.|+.+++..-.+=+.--.++.+--..|.+++.++...+
T Consensus 63 ~E~~~~~~EL~~~-------l~sie~dLeDL----e~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk 125 (130)
T 4dnd_A 63 EELDWTTNELRNG-------LRSIEWDLEDL----EETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMK 125 (130)
T ss_dssp CHHHHHHHHHHHH-------HHHHHHHHHHH----HHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHH----HHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555553 67788888775 588888887665212112467777788887777766544
No 103
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=24.76 E-value=1.7e+02 Score=22.91 Aligned_cols=40 Identities=18% Similarity=0.221 Sum_probs=25.4
Q ss_pred HHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006984 518 LNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSEN 564 (623)
Q Consensus 518 l~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keen 564 (623)
....-.+|-.|+.+++.+ |.+|..+-..|..++..+...+
T Consensus 13 A~rSR~RKk~~~~~LE~~-------v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 13 ARESRRKKKEYVKSLENR-------VAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 344556777888887776 4556666666666666555443
No 104
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=24.40 E-value=2.2e+02 Score=22.24 Aligned_cols=55 Identities=15% Similarity=0.217 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHH
Q 006984 348 EQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQL 402 (623)
Q Consensus 348 ~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~L 402 (623)
..|+.....+...+.-.-..-.|+..-+..|..+..+++++..|+..+..++..+
T Consensus 9 ~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l 63 (65)
T 1gl2_D 9 AGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLV 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444577888889999999999999999999998887654
No 105
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=24.13 E-value=64 Score=23.20 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006984 541 EMVMQLATQRELIQKQVY 558 (623)
Q Consensus 541 ~lV~KL~~ErdrLe~ql~ 558 (623)
-.|++|++.+|||++-+.
T Consensus 13 ~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 13 AIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 468899999999998653
No 106
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=22.90 E-value=1.2e+02 Score=31.90 Aligned_cols=53 Identities=19% Similarity=0.440 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHH
Q 006984 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL 385 (623)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel 385 (623)
..++..|+++...++..+..++..+...+..+-..+..-..|-+.|++|+..|
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNI 61 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
No 107
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.76 E-value=4e+02 Score=23.52 Aligned_cols=14 Identities=14% Similarity=0.425 Sum_probs=5.6
Q ss_pred HHHHhhhhhhhhhh
Q 006984 469 IEDLKSKVSKAESK 482 (623)
Q Consensus 469 IEdLk~Kl~rAE~R 482 (623)
+..|+.++.+...+
T Consensus 28 ~~~L~~~l~eE~~~ 41 (97)
T 2eqb_B 28 VKRLREDIAKENEL 41 (97)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 108
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=22.75 E-value=2.5e+02 Score=23.58 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHhHHHh
Q 006984 346 LEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYG 387 (623)
Q Consensus 346 LE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~r 387 (623)
|+..|..-.++|..-..-.++.+.++...+..|+.|..++++
T Consensus 24 Lq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 24 LQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333343333333333333334444444444455555554443
No 109
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=22.30 E-value=2.4e+02 Score=24.26 Aligned_cols=35 Identities=11% Similarity=0.271 Sum_probs=24.4
Q ss_pred hhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHH
Q 006984 474 SKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILE 515 (623)
Q Consensus 474 ~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE 515 (623)
+..-.+++++.-+|.++- +|..|+..++.+++.|.
T Consensus 38 ~~ni~~eskL~eae~rn~-------eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 38 TDNQNFASQLREAEARNR-------DLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 333444555555666666 99999999999888764
No 110
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=21.74 E-value=2.6e+02 Score=24.98 Aligned_cols=47 Identities=11% Similarity=0.095 Sum_probs=23.8
Q ss_pred HhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhc
Q 006984 372 NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKG 418 (623)
Q Consensus 372 aaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Les 418 (623)
+++-=.|..||+.+..-|+-.....-.+.+.+.-...+.+....|..
T Consensus 26 sal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~ 72 (103)
T 4h22_A 26 TNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQF 72 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566666666655555555444444444444444444444433
No 111
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=21.73 E-value=3.6e+02 Score=22.65 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006984 337 LTMKEKVKSLEEQLKESEIRLQ 358 (623)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~ 358 (623)
..|.++...++..++....++.
T Consensus 73 ~~L~~~~e~ie~~i~~le~~~~ 94 (117)
T 2zqm_A 73 AELKEKIETLEVRLNALERQEK 94 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 112
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=21.65 E-value=2.6e+02 Score=23.81 Aligned_cols=61 Identities=16% Similarity=0.298 Sum_probs=0.0
Q ss_pred hhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHH-------HHHHHhHhhHhhhHHHHHhHHHHHHHH
Q 006984 320 AKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESE-------IRLQNANACFQTSQEQLNEMDNFIESL 381 (623)
Q Consensus 320 ~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~-------eQL~~A~aklEesE~EVaaLerrIelL 381 (623)
.++...++|... +.....|.++|..+|.++..+. ..+..+...++-.--++.++..-+..|
T Consensus 7 e~e~~~~klq~~-E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 7 EREETQQKVQDL-ETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp ---CTTHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
No 113
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=21.45 E-value=87 Score=23.39 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006984 544 MQLATQRELIQKQVYSLTSENKLLVE 569 (623)
Q Consensus 544 ~KL~~ErdrLe~ql~s~keenK~L~e 569 (623)
-||-++++.=..+|.+++++|..|.+
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 47888888889999999999988753
No 114
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=21.38 E-value=4.2e+02 Score=23.34 Aligned_cols=79 Identities=25% Similarity=0.308 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh----HH---HHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhh
Q 006984 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS----QE---QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT 405 (623)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes----E~---EVaaLerrIelLKEel~rAEsRa~tAesKle~LseT 405 (623)
+.++..|+.++..+-.+-.....++.++...++.. +. .-.++++-|..|+..++.+--.-.. |..-
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~d-------LE~~ 91 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLD-------LERK 91 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHH-------HHHH
Confidence 45666777776665555544555544444444332 22 3336666677777666544322222 3333
Q ss_pred hHHHHHHhhhhhc
Q 006984 406 NLELSEEINFLKG 418 (623)
Q Consensus 406 NdELerelk~Les 418 (623)
..-|.+++.||+.
T Consensus 92 iesL~eEl~FLKk 104 (119)
T 3ol1_A 92 VESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455666666654
No 115
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=20.92 E-value=2.3e+02 Score=30.38 Aligned_cols=110 Identities=16% Similarity=0.203 Sum_probs=74.8
Q ss_pred hhhhhHHHHHHHHHhhcCCccccccCCCccchHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchh
Q 006984 58 EKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLR 137 (623)
Q Consensus 58 EKl~NL~~l~M~~~~~~~~~E~~~~~~~~i~~~s~eka~efDlL~gildsEv~ele~~~~~lq~~I~~~~~~~~s~~~~~ 137 (623)
=|..=||.++..+.....++-.+..+-. +|++|--.|+ .-|.++|++|.+=+..++.+|...... ++.+ +
T Consensus 257 ~k~TLLhylv~~v~~~~p~l~~f~~eL~-----~v~~Askv~~--~~l~~~~~~L~~~l~~v~~~l~~~~~~--~~~~-~ 326 (483)
T 2j1d_G 257 KNITLLHYLITIVENKYPSVLNLNEELR-----DIPQAAKVNM--TELDKEISTLRSGLKAVETELEYQKSQ--PPQP-G 326 (483)
T ss_dssp TTCBHHHHHHHHHHHHCGGGGGHHHHTT-----THHHHHTCCH--HHHHHHHHHHHHHHHHHHHHHHHHHTS--CCCT-T
T ss_pred CCccHHHHHHHHHHHhCchhhchHHHHh-----hHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCc-h
Confidence 3555688999988888777776654433 3455555443 446788999999999998888765332 1222 3
Q ss_pred hHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcc
Q 006984 138 EVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFI 182 (623)
Q Consensus 138 ~~f~~~~~~~~kL~~~~~sLkq~~e~~~ei~~qsa~f~r~~~~~~ 182 (623)
..|... |..=+..+...+...+.++..+.. .|..+..+|.
T Consensus 327 d~f~~~--m~~Fl~~a~~~~~~L~~~~~~~~~---~~~~l~~yFG 366 (483)
T 2j1d_G 327 DKFVSV--VSQFITVASFSFSDVEDLLAEAKD---LFTKAVKHFG 366 (483)
T ss_dssp CCHHHH--HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHTT
T ss_pred hhHHHH--HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhC
Confidence 455532 478888899999988888888765 5666666664
No 116
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=20.11 E-value=3.8e+02 Score=22.23 Aligned_cols=22 Identities=9% Similarity=0.117 Sum_probs=9.5
Q ss_pred hHHHHHHHhHHHHHhhhhHHHH
Q 006984 305 SELKSKLGDFIEQLKAKDMVLQ 326 (623)
Q Consensus 305 sel~sKL~~~~eqL~~k~~~le 326 (623)
..+..++.....++..-+.+++
T Consensus 18 ~~l~~q~~~l~~~~~e~~~~~~ 39 (107)
T 1fxk_A 18 QAISVQKQTVEMQINETQKALE 39 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
Done!