Query 006986
Match_columns 622
No_of_seqs 269 out of 885
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 17:19:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006986.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006986hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 2E-105 3E-110 859.6 38.1 363 254-622 1-374 (374)
2 PRK15451 tRNA cmo(5)U34 methyl 96.8 0.066 1.4E-06 54.8 17.3 191 332-573 34-226 (247)
3 TIGR00740 methyltransferase, p 95.4 0.52 1.1E-05 47.7 15.4 108 356-489 53-162 (239)
4 TIGR02752 MenG_heptapren 2-hep 95.3 1.6 3.4E-05 43.7 18.1 114 346-487 35-149 (231)
5 PF01209 Ubie_methyltran: ubiE 94.8 0.28 6.1E-06 50.3 11.4 181 347-577 38-220 (233)
6 TIGR02716 C20_methyl_CrtF C-20 94.2 1.1 2.4E-05 47.2 14.4 119 345-492 138-258 (306)
7 PLN02233 ubiquinone biosynthes 93.2 7.5 0.00016 40.3 18.2 134 343-503 60-195 (261)
8 PRK06202 hypothetical protein; 91.2 4.8 0.0001 40.6 13.7 110 352-487 56-165 (232)
9 KOG4407 Predicted Rho GTPase-a 89.8 0.093 2E-06 63.9 -0.1 16 291-306 915-930 (1973)
10 PF13489 Methyltransf_23: Meth 89.2 2.9 6.4E-05 38.5 9.5 98 354-492 20-119 (161)
11 TIGR01934 MenG_MenH_UbiE ubiqu 89.0 24 0.00051 34.5 18.3 121 341-491 24-146 (223)
12 PLN02244 tocopherol O-methyltr 88.1 19 0.00042 38.8 16.1 102 356-488 118-223 (340)
13 PF11498 Activator_LAG-3: Tran 87.0 0.19 4.1E-06 54.0 0.0 6 74-79 433-438 (468)
14 PF12847 Methyltransf_18: Meth 86.8 3.3 7.1E-05 36.1 7.8 105 359-488 4-110 (112)
15 COG2226 UbiE Methylase involve 86.4 40 0.00086 35.1 16.5 189 335-574 29-221 (238)
16 PF13847 Methyltransf_31: Meth 86.4 4.2 9.2E-05 38.0 8.8 108 355-490 2-112 (152)
17 PLN02336 phosphoethanolamine N 85.6 57 0.0012 36.6 18.7 113 344-487 254-367 (475)
18 PRK14103 trans-aconitate 2-met 84.9 7.6 0.00017 39.7 10.5 105 347-488 20-125 (255)
19 PLN02396 hexaprenyldihydroxybe 84.6 14 0.0003 39.9 12.7 100 356-487 131-233 (322)
20 TIGR03438 probable methyltrans 84.2 14 0.0003 39.1 12.4 117 348-487 57-175 (301)
21 TIGR00477 tehB tellurite resis 83.3 8.3 0.00018 38.1 9.7 111 343-484 17-128 (195)
22 PRK12335 tellurite resistance 81.3 11 0.00025 39.4 10.3 107 347-484 111-218 (287)
23 PF13649 Methyltransf_25: Meth 81.2 4.4 9.6E-05 35.2 6.1 97 360-481 1-99 (101)
24 KOG4407 Predicted Rho GTPase-a 80.5 0.58 1.3E-05 57.5 0.4 8 368-375 1121-1128(1973)
25 PLN02336 phosphoethanolamine N 79.4 20 0.00044 40.1 12.1 113 346-487 27-140 (475)
26 PF00891 Methyltransf_2: O-met 78.1 13 0.00028 37.6 9.2 111 346-493 90-204 (241)
27 PRK00216 ubiE ubiquinone/menaq 77.9 74 0.0016 31.3 16.1 42 348-396 43-84 (239)
28 PRK11207 tellurite resistance 76.9 25 0.00054 34.8 10.6 112 344-486 18-131 (197)
29 PF03291 Pox_MCEL: mRNA cappin 76.8 43 0.00094 36.3 13.2 116 356-487 62-184 (331)
30 PF09243 Rsm22: Mitochondrial 76.6 19 0.00042 37.8 10.2 139 339-506 12-156 (274)
31 PF08241 Methyltransf_11: Meth 74.9 20 0.00044 29.5 8.2 93 361-486 1-94 (95)
32 TIGR03587 Pse_Me-ase pseudamin 74.3 33 0.00072 34.3 10.8 101 358-491 45-145 (204)
33 KOG4369 RTK signaling protein 74.2 3.5 7.6E-05 50.7 4.3 9 10-18 1854-1862(2131)
34 PRK11036 putative S-adenosyl-L 73.4 22 0.00047 36.4 9.5 111 347-486 36-146 (255)
35 smart00138 MeTrc Methyltransfe 72.7 6.2 0.00013 41.1 5.4 43 354-396 97-140 (264)
36 COG5624 TAF61 Transcription in 72.2 2.1 4.6E-05 47.1 1.8 14 141-154 318-331 (505)
37 TIGR02081 metW methionine bios 71.5 26 0.00056 34.3 9.2 39 347-396 6-44 (194)
38 PRK08317 hypothetical protein; 71.1 1.1E+02 0.0023 29.9 16.2 42 348-396 11-52 (241)
39 PLN02585 magnesium protoporphy 69.9 52 0.0011 35.5 11.7 103 356-487 144-248 (315)
40 PRK01683 trans-aconitate 2-met 69.5 42 0.00091 34.1 10.6 111 344-488 19-129 (258)
41 KOG3648 Golgi apparatus protei 69.1 4.6 0.0001 46.8 3.7 11 368-378 264-274 (1179)
42 KOG3982 Runt and related trans 69.1 5.1 0.00011 43.7 3.8 29 365-396 236-264 (475)
43 TIGR02021 BchM-ChlM magnesium 66.7 48 0.001 32.9 10.1 48 339-396 36-85 (219)
44 TIGR01645 half-pint poly-U bin 64.2 6.1 0.00013 46.3 3.5 12 534-546 542-553 (612)
45 PTZ00098 phosphoethanolamine N 63.2 1.8E+02 0.0039 30.2 13.9 49 339-396 35-83 (263)
46 TIGR03439 methyl_EasF probable 62.2 1.1E+02 0.0024 33.2 12.3 148 347-515 69-234 (319)
47 PRK00107 gidB 16S rRNA methylt 60.6 1.7E+02 0.0036 29.1 12.5 97 357-488 46-144 (187)
48 TIGR01645 half-pint poly-U bin 60.4 6.6 0.00014 46.0 2.9 7 468-474 500-506 (612)
49 PRK05785 hypothetical protein; 60.1 2E+02 0.0043 29.1 15.1 94 357-489 52-146 (226)
50 PF02166 Androgen_recep: Andro 60.1 2.9 6.3E-05 45.0 0.0 10 523-532 356-365 (423)
51 COG2227 UbiG 2-polyprenyl-3-me 59.1 17 0.00037 37.9 5.3 101 355-487 58-159 (243)
52 PF03848 TehB: Tellurite resis 57.3 77 0.0017 31.9 9.5 111 346-487 20-131 (192)
53 PRK15001 SAM-dependent 23S rib 57.0 97 0.0021 34.4 11.1 119 348-489 220-340 (378)
54 PRK05134 bifunctional 3-demeth 56.8 2.1E+02 0.0046 28.4 13.3 22 555-576 183-204 (233)
55 PRK06922 hypothetical protein; 55.8 84 0.0018 37.5 10.8 110 357-489 419-538 (677)
56 PF02166 Androgen_recep: Andro 55.4 3.9 8.5E-05 44.1 0.0 6 167-172 150-155 (423)
57 PRK09489 rsmC 16S ribosomal RN 55.4 2E+02 0.0044 31.3 13.1 115 346-487 186-301 (342)
58 PF02353 CMAS: Mycolic acid cy 53.5 70 0.0015 33.7 8.9 113 346-488 52-165 (273)
59 PRK10909 rsmD 16S rRNA m(2)G96 52.9 1.2E+02 0.0027 30.4 10.2 105 358-494 55-164 (199)
60 TIGR02072 BioC biotin biosynth 52.4 2.4E+02 0.0051 27.6 17.5 44 345-396 20-66 (240)
61 TIGR00452 methyltransferase, p 51.7 1.4E+02 0.0031 32.2 11.0 113 347-488 112-224 (314)
62 PF15336 Auts2: Autism suscept 50.6 1.1E+02 0.0024 31.3 9.3 23 177-199 146-168 (212)
63 PF09606 Med15: ARC105 or Med1 47.4 6.2 0.00014 47.4 0.0 10 344-353 614-623 (799)
64 PRK15068 tRNA mo(5)U34 methylt 47.3 3.9E+02 0.0085 28.7 14.9 113 347-488 113-225 (322)
65 PRK11705 cyclopropane fatty ac 47.1 1.3E+02 0.0027 33.3 10.1 43 345-396 156-198 (383)
66 COG0052 RpsB Ribosomal protein 46.5 7.7 0.00017 40.5 0.5 110 356-491 36-167 (252)
67 KOG4300 Predicted methyltransf 45.9 3.2E+02 0.007 28.4 11.8 122 352-504 72-196 (252)
68 PLN02232 ubiquinone biosynthes 45.6 2.7E+02 0.0059 26.4 11.9 36 451-491 47-84 (160)
69 COG1341 Predicted GTPase or GT 45.1 1.5E+02 0.0032 33.3 10.0 158 339-541 89-254 (398)
70 TIGR00138 gidB 16S rRNA methyl 44.6 1.8E+02 0.004 28.4 9.9 98 357-488 43-141 (181)
71 KOG4217 Nuclear receptors of t 43.4 35 0.00075 38.7 4.9 16 526-543 527-542 (605)
72 PF07521 RMMBL: RNA-metabolisi 43.3 37 0.00081 25.7 3.7 38 448-487 1-38 (43)
73 KOG4592 Uncharacterized conser 42.9 35 0.00077 39.8 5.0 16 503-518 634-649 (728)
74 KOG1151 Tousled-like protein k 42.8 11 0.00024 42.6 1.0 28 337-364 414-445 (775)
75 PRK10258 biotin biosynthesis p 42.0 2.5E+02 0.0053 28.4 10.7 43 344-396 30-72 (251)
76 smart00650 rADc Ribosomal RNA 41.6 1.9E+02 0.0042 27.5 9.3 41 346-396 3-43 (169)
77 KOG1151 Tousled-like protein k 41.2 22 0.00048 40.3 3.0 8 456-463 617-624 (775)
78 PRK07580 Mg-protoporphyrin IX 41.1 2.7E+02 0.0059 27.3 10.7 42 345-396 49-93 (230)
79 PF04684 BAF1_ABF1: BAF1 / ABF 38.8 8.6 0.00019 43.3 -0.6 6 3-8 277-282 (496)
80 PF09606 Med15: ARC105 or Med1 38.5 10 0.00023 45.6 0.0 7 276-282 540-546 (799)
81 PRK14968 putative methyltransf 36.6 3.7E+02 0.008 25.3 11.9 32 355-396 22-53 (188)
82 KOG4217 Nuclear receptors of t 36.5 95 0.0021 35.4 6.9 16 292-307 328-343 (605)
83 TIGR03534 RF_mod_PrmC protein- 36.4 3E+02 0.0065 27.4 10.2 33 356-396 87-119 (251)
84 KOG1924 RhoA GTPase effector D 35.3 60 0.0013 39.1 5.3 37 449-485 876-919 (1102)
85 KOG1924 RhoA GTPase effector D 34.9 57 0.0012 39.3 5.1 12 549-560 1018-1029(1102)
86 COG4952 Predicted sugar isomer 34.4 2.4E+02 0.0053 30.5 9.2 143 411-577 109-257 (430)
87 PF06085 Rz1: Lipoprotein Rz1 34.0 32 0.0007 26.1 2.0 16 207-222 24-39 (40)
88 PRK11873 arsM arsenite S-adeno 33.1 3.6E+02 0.0077 27.7 10.3 20 557-576 210-229 (272)
89 COG2230 Cfa Cyclopropane fatty 32.8 3.7E+02 0.008 28.9 10.4 113 342-484 58-171 (283)
90 PF13679 Methyltransf_32: Meth 31.1 1.2E+02 0.0026 28.3 5.9 40 353-396 22-61 (141)
91 smart00857 Resolvase Resolvase 30.3 4.3E+02 0.0092 24.1 9.8 100 406-511 16-124 (148)
92 TIGR00406 prmA ribosomal prote 29.8 6.7E+02 0.015 26.3 12.3 46 342-396 143-190 (288)
93 TIGR01626 ytfJ_HI0045 conserve 29.6 1.4E+02 0.003 29.9 6.3 111 356-479 59-182 (184)
94 KOG3537 Adaptor protein NUMB [ 29.5 84 0.0018 35.5 5.1 12 82-93 439-450 (543)
95 PRK00274 ksgA 16S ribosomal RN 29.4 1.8E+02 0.0039 30.3 7.4 54 333-396 14-72 (272)
96 cd06815 PLPDE_III_AR_like_1 Ty 29.1 3.5E+02 0.0076 29.2 9.9 34 357-395 118-156 (353)
97 PRK13255 thiopurine S-methyltr 28.5 6.3E+02 0.014 25.5 11.6 31 356-396 37-67 (218)
98 KOG4368 Predicted RNA binding 27.4 1.7E+02 0.0037 34.3 7.1 20 200-219 547-566 (757)
99 PF04716 ETC_C1_NDUFA5: ETC co 26.4 65 0.0014 26.3 2.7 38 506-546 8-45 (57)
100 COG4181 Predicted ABC-type tra 26.3 77 0.0017 32.1 3.7 133 353-494 18-178 (228)
101 PF13552 DUF4127: Protein of u 26.2 1.3E+02 0.0028 34.5 6.1 62 457-518 78-147 (497)
102 PLN02446 (5-phosphoribosyl)-5- 25.1 72 0.0016 33.7 3.5 27 353-380 55-81 (262)
103 KOG1165 Casein kinase (serine/ 24.6 38 0.00083 37.3 1.4 14 353-366 163-176 (449)
104 TIGR00091 tRNA (guanine-N(7)-) 24.5 2.8E+02 0.006 27.2 7.4 32 357-396 17-48 (194)
105 TIGR00492 alr alanine racemase 24.4 3.9E+02 0.0085 28.9 9.2 71 356-431 120-201 (367)
106 TIGR02129 hisA_euk phosphoribo 24.2 86 0.0019 33.0 3.9 34 353-393 50-83 (253)
107 COG4106 Tam Trans-aconitate me 23.1 2.3E+02 0.0049 29.7 6.5 112 350-496 24-136 (257)
108 KOG3535 Adaptor protein Disabl 23.0 7.3E+02 0.016 28.3 10.6 10 163-172 443-452 (557)
109 PRK03522 rumB 23S rRNA methylu 22.8 6E+02 0.013 27.0 10.1 101 356-489 173-274 (315)
110 cd00635 PLPDE_III_YBL036c_like 22.6 2.5E+02 0.0055 28.1 6.9 70 356-430 117-197 (222)
111 smart00828 PKS_MT Methyltransf 22.5 4.4E+02 0.0096 25.9 8.5 101 359-488 2-104 (224)
112 TIGR01983 UbiG ubiquinone bios 22.4 7.4E+02 0.016 24.2 13.3 20 557-576 183-202 (224)
113 PRK13944 protein-L-isoaspartat 20.9 8.1E+02 0.018 24.1 10.0 43 347-396 63-105 (205)
114 TIGR00537 hemK_rel_arch HemK-r 20.9 7.3E+02 0.016 23.6 11.5 39 348-396 11-49 (179)
115 PHA03211 serine/threonine kina 20.4 3E+02 0.0065 31.1 7.5 25 344-368 209-233 (461)
116 KOG4368 Predicted RNA binding 20.2 1.3E+03 0.028 27.5 12.1 18 141-158 376-393 (757)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=1.5e-105 Score=859.63 Aligned_cols=363 Identities=42% Similarity=0.696 Sum_probs=338.7
Q ss_pred HHHHHHHHHHHHhcCc-HHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHHhhcccccccccc---cc---ChHHHHHH
Q 006986 254 LTKALIDCACLVESEP-DKAVKSLVRLRGSVCAHGNPTERVAYYFTEALYKRLTQRAEKSITTL---EA---NCEDCILS 326 (622)
Q Consensus 254 L~~lLl~CA~Av~~~~-~~A~~~L~~L~~~aS~~Gd~~qRlA~yFaeAL~~Rl~~~~~~~~~~~---~~---s~~~~~~a 326 (622)
|++||++||+||+.++ ..|..+|.+|++++|++|||+||||+||++||.+||.++++..+... .. ...+.+.+
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a 80 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA 80 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence 6899999999999866 56778899999999999999999999999999999999776654221 11 24668899
Q ss_pred HHHHHhcCCccchhHHHHHHHHHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHH
Q 006986 327 FKTLNDACPYSKFAYLTANQAILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAAS 406 (622)
Q Consensus 327 ~~~l~~~sP~~kfah~tANqAILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~ 406 (622)
|+.||+.|||+||||||||||||||++|+++||||||||++|+|||+|||+||.|++||| +||||||+.|..+ +...
T Consensus 81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp-~LrIT~i~~~~~~--~~~~ 157 (374)
T PF03514_consen 81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPP-SLRITGIGPPNSG--SADE 157 (374)
T ss_pred HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCC-eEEEEeccCCCCC--cHHH
Confidence 999999999999999999999999999999999999999999999999999999999988 9999999988765 4788
Q ss_pred HHHHHHHHHHHhhhcCCeEEEEEe-ecCccCccccCCccCCCceEEEeeeccccccccCch---HHHHHHHHHHHhcCCc
Q 006986 407 LLATGDRLREFAGSLSLNLEFEPI-LIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNR---LAVENALQMAKSLNPI 482 (622)
Q Consensus 407 L~~tG~rL~~fA~~lgvpFeF~~V-~~~~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~---~~~~~~L~~ir~L~P~ 482 (622)
+++||+||.+||+++||||||++| +.++++++.++|++++||+|||||+|+||||++++. .+++.||+.||+|+|+
T Consensus 158 l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~ 237 (374)
T PF03514_consen 158 LQETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPK 237 (374)
T ss_pred HHHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCC
Confidence 999999999999999999999995 678999999999999999999999999999997643 3689999999999999
Q ss_pred EEEEEeecCCCCCCchHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhhhhhhhhcccccCCccccccchhhHH
Q 006986 483 VVTLAEYEANLNRTGFLARFKNALKYYTAVFESLEPNMTTDSDERFQVERQILGPRIANLLAPEKQGAKRERVEDIENWR 562 (622)
Q Consensus 483 Ivtl~E~Ea~~Ns~~F~~RF~eAL~yYsalFDSLea~l~~~s~eR~~vE~~~lgreI~niVAcEgg~~R~ER~E~~~~Wr 562 (622)
|||++|+|+|||+++|++||.|||+||+++|||||+++++++++|..+|+.+||++|+|||||| |.+|+||||++++|+
T Consensus 238 vvv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~e-g~~R~eR~e~~~~W~ 316 (374)
T PF03514_consen 238 VVVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACE-GEERVERHERLEQWR 316 (374)
T ss_pred EEEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcc-cccccccccchhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 589999999999999
Q ss_pred HHHHhCCCcccCCChHHHHHHHHHhhhcCCCCCcEEEeecCCEEEEEECCcceEEEeecC
Q 006986 563 IFMENSDFEGIPFSHYALSQAEILLWNYNYSPLFTLNQSHDNLLTLSWKKVPLLTVSSWR 622 (622)
Q Consensus 563 ~rm~~AGF~~v~ls~~a~~qak~LL~~~~~~~~f~l~~~~~g~L~LgWk~~pL~avSAWr 622 (622)
.||++|||+++|||+++++|||.||++|. ++||+|++ ++|||+||||++||+++||||
T Consensus 317 ~r~~~aGF~~~~ls~~~~~qa~~ll~~~~-~~g~~v~~-~~~~l~L~Wk~~pL~~~SaWr 374 (374)
T PF03514_consen 317 RRMRRAGFRPVPLSEFAVSQAKLLLRKFP-GDGYTVEE-DGGCLLLGWKGRPLVAASAWR 374 (374)
T ss_pred HHHHhcCCeecCCCHHHHHHHHHHHhccC-CCCeEEEE-cCCEEEEEeCCcEEEEEeCcC
Confidence 99999999999999999999999999997 78899886 579999999999999999998
No 2
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=96.82 E-value=0.066 Score=54.84 Aligned_cols=191 Identities=13% Similarity=0.124 Sum_probs=97.4
Q ss_pred hcCCccchhHHHHHHHHHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHH
Q 006986 332 DACPYSKFAYLTANQAILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATG 411 (622)
Q Consensus 332 ~~sP~~kfah~tANqAILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG 411 (622)
...|.+...|-.++..+-..+. ..-+|+|+|.|.|.--.. |+.+-. .| ..++|||+.. ...++.+.
T Consensus 34 ~~~p~y~~~~~~~~~~~~~~~~--~~~~vLDlGcGtG~~~~~----l~~~~~-~~-~~~v~gvD~S------~~ml~~A~ 99 (247)
T PRK15451 34 RSVPGYSNIISMIGMLAERFVQ--PGTQVYDLGCSLGAATLS----VRRNIH-HD-NCKIIAIDNS------PAMIERCR 99 (247)
T ss_pred hcCCChHHHHHHHHHHHHHhCC--CCCEEEEEcccCCHHHHH----HHHhcC-CC-CCeEEEEeCC------HHHHHHHH
Confidence 4467777777666643322222 335799999999974333 333211 13 4799999842 34455555
Q ss_pred HHHHHHhhhcCCeEEEEEeecCccCccccCCccCCCceEEEeeeccccccccCchHHHHHHHHH-HHhcCCc-EEEEEee
Q 006986 412 DRLREFAGSLSLNLEFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQM-AKSLNPI-VVTLAEY 489 (622)
Q Consensus 412 ~rL~~fA~~lgvpFeF~~V~~~~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~-ir~L~P~-Ivtl~E~ 489 (622)
+++.++.. .-.++| +...+.++.. ...++++ +.+.|||+.. ..+..+|+. .+.|+|. +++++|.
T Consensus 100 ~~~~~~~~--~~~v~~--~~~d~~~~~~-----~~~D~vv--~~~~l~~l~~---~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 100 RHIDAYKA--PTPVDV--IEGDIRDIAI-----ENASMVV--LNFTLQFLEP---SERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHHHhcCC--CCCeEE--EeCChhhCCC-----CCCCEEe--hhhHHHhCCH---HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 55544221 113343 3333333321 1234444 4567788753 234556654 4788998 5667674
Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhhhhhhhhcccccCCccccccchhhHHHHHHhCC
Q 006986 490 EANLNRTGFLARFKNALKYYTAVFESLEPNMTTDSDERFQVERQILGPRIANLLAPEKQGAKRERVEDIENWRIFMENSD 569 (622)
Q Consensus 490 Ea~~Ns~~F~~RF~eAL~yYsalFDSLea~l~~~s~eR~~vE~~~lgreI~niVAcEgg~~R~ER~E~~~~Wr~rm~~AG 569 (622)
=... .+.....+.+....|. ...... ...+++. ...++|+ -++++.++...+|++||
T Consensus 166 ~~~~-~~~~~~~~~~~~~~~~-----~~~g~s-----~~ei~~~--~~~~~~~----------~~~~~~~~~~~~L~~aG 222 (247)
T PRK15451 166 FSFE-DAKVGELLFNMHHDFK-----RANGYS-----ELEISQK--RSMLENV----------MLTDSVETHKARLHKAG 222 (247)
T ss_pred cCCC-cchhHHHHHHHHHHHH-----HHcCCC-----HHHHHHH--HHHHHhh----------cccCCHHHHHHHHHHcC
Confidence 3322 2223333333322221 111111 1122221 1223333 34467788899999999
Q ss_pred Cccc
Q 006986 570 FEGI 573 (622)
Q Consensus 570 F~~v 573 (622)
|..+
T Consensus 223 F~~v 226 (247)
T PRK15451 223 FEHS 226 (247)
T ss_pred chhH
Confidence 9864
No 3
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=95.43 E-value=0.52 Score=47.72 Aligned_cols=108 Identities=19% Similarity=0.250 Sum_probs=59.0
Q ss_pred CeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCeEEEEEeecCcc
Q 006986 356 SHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEFEPILIPIR 435 (622)
Q Consensus 356 ~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvpFeF~~V~~~~e 435 (622)
..-+|+|+|.|.|. ++..|+.+-.. | ..++|||+.. ...+..+.+++.++.. +..++| +...+.
T Consensus 53 ~~~~iLDlGcG~G~----~~~~l~~~~~~-p-~~~v~gvD~s------~~ml~~a~~~~~~~~~--~~~v~~--~~~d~~ 116 (239)
T TIGR00740 53 PDSNVYDLGCSRGA----ATLSARRNINQ-P-NVKIIGIDNS------QPMVERCRQHIAAYHS--EIPVEI--LCNDIR 116 (239)
T ss_pred CCCEEEEecCCCCH----HHHHHHHhcCC-C-CCeEEEEeCC------HHHHHHHHHHHHhcCC--CCCeEE--EECChh
Confidence 44579999999995 45555554222 3 4799999842 2445555555554321 223333 333333
Q ss_pred CccccCCccCCCceEEEeeeccccccccCchHHHHHHHHHH-HhcCCcEEEE-Eee
Q 006986 436 KLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMA-KSLNPIVVTL-AEY 489 (622)
Q Consensus 436 ~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~i-r~L~P~Ivtl-~E~ 489 (622)
++.. ....+ |-+.+.|||+.++ ....+|+.+ |.|+|.-+++ +|.
T Consensus 117 ~~~~-----~~~d~--v~~~~~l~~~~~~---~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 117 HVEI-----KNASM--VILNFTLQFLPPE---DRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred hCCC-----CCCCE--EeeecchhhCCHH---HHHHHHHHHHHhcCCCeEEEEeec
Confidence 3321 12233 4456667887532 234566544 7789996544 453
No 4
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=95.28 E-value=1.6 Score=43.67 Aligned_cols=114 Identities=14% Similarity=0.137 Sum_probs=57.6
Q ss_pred HHHHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCeE
Q 006986 346 QAILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNL 425 (622)
Q Consensus 346 qAILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvpF 425 (622)
+.++..+.-...-+|+|+|.|.|.-. ..|+.+- +| ..++|||+.. ...++.+.+++.+ .+++
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~----~~la~~~--~~-~~~v~gvD~s------~~~~~~a~~~~~~----~~~~- 96 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWS----IALAEAV--GP-EGHVIGLDFS------ENMLSVGRQKVKD----AGLH- 96 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHH----HHHHHHh--CC-CCEEEEEECC------HHHHHHHHHHHHh----cCCC-
Confidence 45666665444568999999999833 3444331 12 3689999842 2334444444432 2332
Q ss_pred EEEEeecCccCccccCCccCCCceEEEeeeccccccccCchHHHHHHHH-HHHhcCCcEEEEE
Q 006986 426 EFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQ-MAKSLNPIVVTLA 487 (622)
Q Consensus 426 eF~~V~~~~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~-~ir~L~P~Ivtl~ 487 (622)
....+....+++. +....=+.|+ +.+.+||+.+ ...+|+ ..|.|+|.-.+++
T Consensus 97 ~v~~~~~d~~~~~---~~~~~fD~V~--~~~~l~~~~~-----~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 97 NVELVHGNAMELP---FDDNSFDYVT--IGFGLRNVPD-----YMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred ceEEEEechhcCC---CCCCCccEEE--EecccccCCC-----HHHHHHHHHHHcCcCeEEEE
Confidence 1222322333322 1111113444 3455677643 234555 5578899855443
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=94.82 E-value=0.28 Score=50.27 Aligned_cols=181 Identities=15% Similarity=0.219 Sum_probs=66.9
Q ss_pred HHHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCeEE
Q 006986 347 AILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLE 426 (622)
Q Consensus 347 AILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvpFe 426 (622)
.+++.+...+..+|+|++.|.|.-+..| +++-+ | .-+|+|+|.. ...|+...+++.+.... +|.|
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l----~~~~~--~-~~~v~~vD~s------~~ML~~a~~k~~~~~~~-~i~~- 102 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTREL----ARRVG--P-NGKVVGVDIS------PGMLEVARKKLKREGLQ-NIEF- 102 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHH----GGGSS------EEEEEES-------HHHHHHHHHHHHHTT---SEEE-
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHH----HHHCC--C-ccEEEEecCC------HHHHHHHHHHHHhhCCC-CeeE-
Confidence 4566666667779999999999755444 44322 2 3599999842 35566666666654332 3332
Q ss_pred EEEeecCccCccccCCccCCCceEEEeeeccccccccCchHHHHHHHHHHHhcCCcE-EEEEeecCCCCCCchHHHHHHH
Q 006986 427 FEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMAKSLNPIV-VTLAEYEANLNRTGFLARFKNA 505 (622)
Q Consensus 427 F~~V~~~~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~ir~L~P~I-vtl~E~Ea~~Ns~~F~~RF~eA 505 (622)
+....++| ...++.+=+|-|.|.||++.+. ...+-.+.|-|+|.- ++++|-....| .+ +...
T Consensus 103 ---v~~da~~l-----p~~d~sfD~v~~~fglrn~~d~----~~~l~E~~RVLkPGG~l~ile~~~p~~--~~---~~~~ 165 (233)
T PF01209_consen 103 ---VQGDAEDL-----PFPDNSFDAVTCSFGLRNFPDR----ERALREMYRVLKPGGRLVILEFSKPRN--PL---LRAL 165 (233)
T ss_dssp ---EE-BTTB-------S-TT-EEEEEEES-GGG-SSH----HHHHHHHHHHEEEEEEEEEEEEEB-SS--HH---HHHH
T ss_pred ---EEcCHHHh-----cCCCCceeEEEHHhhHHhhCCH----HHHHHHHHHHcCCCeEEEEeeccCCCC--ch---hhce
Confidence 33333444 3445566688899999998752 223344668889985 55566544322 22 3333
Q ss_pred HHHHHHHHhh-hccCCCCCCHHHHHHHHHHhhhhhhhhhcccccCCccccccchhhHHHHHHhCCCcccCCCh
Q 006986 506 LKYYTAVFES-LEPNMTTDSDERFQVERQILGPRIANLLAPEKQGAKRERVEDIENWRIFMENSDFEGIPFSH 577 (622)
Q Consensus 506 L~yYsalFDS-Lea~l~~~s~eR~~vE~~~lgreI~niVAcEgg~~R~ER~E~~~~Wr~rm~~AGF~~v~ls~ 577 (622)
..+|...+-= +...+.. ++.. -.+|.+-|.+....+ +-...|+++||+.+....
T Consensus 166 ~~~y~~~ilP~~g~l~~~---~~~~--Y~yL~~Si~~f~~~~-------------~~~~~l~~~Gf~~v~~~~ 220 (233)
T PF01209_consen 166 YKFYFKYILPLIGRLLSG---DREA--YRYLPESIRRFPSPE-------------ELKELLEEAGFKNVEYRP 220 (233)
T ss_dssp HHH----------------------------------------------------------------------
T ss_pred eeeeeccccccccccccc---cccc--ccccccccccccccc-------------cccccccccccccccccc
Confidence 3444443221 2222222 1111 224556666543332 445678999998876543
No 6
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=94.19 E-value=1.1 Score=47.22 Aligned_cols=119 Identities=15% Similarity=0.142 Sum_probs=65.1
Q ss_pred HHHHHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCe
Q 006986 345 NQAILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLN 424 (622)
Q Consensus 345 NqAILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvp 424 (622)
...|++.+.-.+.-+|+|+|.+.|. +...++++- | .+++|+++.| ..++.+.++ ++..|+.
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~----~~~~~~~~~---p-~~~~~~~D~~-------~~~~~a~~~----~~~~gl~ 198 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGD----ISAAMLKHF---P-ELDSTILNLP-------GAIDLVNEN----AAEKGVA 198 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhH----HHHHHHHHC---C-CCEEEEEecH-------HHHHHHHHH----HHhCCcc
Confidence 5677887766666799999999994 445555542 3 4799999753 234443333 3444543
Q ss_pred EEEEEeecCccCccccCCccCCCceEEEeeeccccccccCchHHHHHHHHHH-HhcCCc-EEEEEeecCC
Q 006986 425 LEFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMA-KSLNPI-VVTLAEYEAN 492 (622)
Q Consensus 425 FeF~~V~~~~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~i-r~L~P~-Ivtl~E~Ea~ 492 (622)
=.++.+.....+. .+ ...+++++ ..-||+..+ .....+|+.+ +.|+|. .++++|.-.+
T Consensus 199 ~rv~~~~~d~~~~---~~--~~~D~v~~--~~~lh~~~~---~~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 199 DRMRGIAVDIYKE---SY--PEADAVLF--CRILYSANE---QLSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred ceEEEEecCccCC---CC--CCCCEEEe--EhhhhcCCh---HHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 1222233222211 12 12344433 234565433 2335666644 789997 4666676443
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=93.16 E-value=7.5 Score=40.33 Aligned_cols=134 Identities=17% Similarity=0.181 Sum_probs=70.7
Q ss_pred HHHHHHHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcC
Q 006986 343 TANQAILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLS 422 (622)
Q Consensus 343 tANqAILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lg 422 (622)
.....+++.+.-...-+|+|+|.|.|. +...|+.+- | | .-+|||||.. ...++.+.+|....++...
T Consensus 60 ~~r~~~~~~~~~~~~~~VLDlGcGtG~----~~~~la~~~-~-~-~~~V~gvD~S------~~ml~~A~~r~~~~~~~~~ 126 (261)
T PLN02233 60 IWKRMAVSWSGAKMGDRVLDLCCGSGD----LAFLLSEKV-G-S-DGKVMGLDFS------SEQLAVAASRQELKAKSCY 126 (261)
T ss_pred HHHHHHHHHhCCCCCCEEEEECCcCCH----HHHHHHHHh-C-C-CCEEEEEECC------HHHHHHHHHHhhhhhhccC
Confidence 334444454443455689999999997 334555542 2 2 3589999842 3445555545432222222
Q ss_pred CeEEEEEeecCccCccccCCccCCCceEEEeeeccccccccCchHHHHHHHH-HHHhcCCcE-EEEEeecCCCCCCchHH
Q 006986 423 LNLEFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQ-MAKSLNPIV-VTLAEYEANLNRTGFLA 500 (622)
Q Consensus 423 vpFeF~~V~~~~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~-~ir~L~P~I-vtl~E~Ea~~Ns~~F~~ 500 (622)
-..+|. ....+++ ...++.+=+|-+.+.|||+.+ . ..+|+ ..|-|+|.- ++++|.... ...|..
T Consensus 127 ~~i~~~--~~d~~~l-----p~~~~sfD~V~~~~~l~~~~d----~-~~~l~ei~rvLkpGG~l~i~d~~~~--~~~~~~ 192 (261)
T PLN02233 127 KNIEWI--EGDATDL-----PFDDCYFDAITMGYGLRNVVD----R-LKAMQEMYRVLKPGSRVSILDFNKS--TQPFTT 192 (261)
T ss_pred CCeEEE--EcccccC-----CCCCCCEeEEEEecccccCCC----H-HHHHHHHHHHcCcCcEEEEEECCCC--CcHHHH
Confidence 233332 2233333 222333445566777888753 2 34444 557889984 455554432 334555
Q ss_pred HHH
Q 006986 501 RFK 503 (622)
Q Consensus 501 RF~ 503 (622)
.+.
T Consensus 193 ~~~ 195 (261)
T PLN02233 193 SMQ 195 (261)
T ss_pred HHH
Confidence 443
No 8
>PRK06202 hypothetical protein; Provisional
Probab=91.21 E-value=4.8 Score=40.56 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=55.6
Q ss_pred hhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCeEEEEEee
Q 006986 352 TENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEFEPIL 431 (622)
Q Consensus 352 ~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvpFeF~~V~ 431 (622)
+...+...|+|+|.|.|. +...|-.... ..|+ ..+|||||.. ...++.+.+++ +..++.+....
T Consensus 56 l~~~~~~~iLDlGcG~G~-~~~~L~~~~~-~~g~--~~~v~gvD~s------~~~l~~a~~~~----~~~~~~~~~~~-- 119 (232)
T PRK06202 56 LSADRPLTLLDIGCGGGD-LAIDLARWAR-RDGL--RLEVTAIDPD------PRAVAFARANP----RRPGVTFRQAV-- 119 (232)
T ss_pred cCCCCCcEEEEeccCCCH-HHHHHHHHHH-hCCC--CcEEEEEcCC------HHHHHHHHhcc----ccCCCeEEEEe--
Confidence 333566789999999996 3333322222 2243 3799999852 23333332221 12245443321
Q ss_pred cCccCccccCCccCCCceEEEeeeccccccccCchHHHHHHHHHHHhcCCcEEEEE
Q 006986 432 IPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMAKSLNPIVVTLA 487 (622)
Q Consensus 432 ~~~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~ir~L~P~Ivtl~ 487 (622)
.+.+. ..++.+=+|-|.+.|||+.++ .+..+|+.++++.-.++++.
T Consensus 120 --~~~l~-----~~~~~fD~V~~~~~lhh~~d~---~~~~~l~~~~r~~~~~~~i~ 165 (232)
T PRK06202 120 --SDELV-----AEGERFDVVTSNHFLHHLDDA---EVVRLLADSAALARRLVLHN 165 (232)
T ss_pred --ccccc-----ccCCCccEEEECCeeecCChH---HHHHHHHHHHHhcCeeEEEe
Confidence 12221 112333345555678998652 24567776655443555443
No 9
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=89.82 E-value=0.093 Score=63.93 Aligned_cols=16 Identities=6% Similarity=0.113 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHHHhh
Q 006986 291 ERVAYYFTEALYKRLT 306 (622)
Q Consensus 291 qRlA~yFaeAL~~Rl~ 306 (622)
.|...+|-.++...|+
T Consensus 915 ~s~e~Fsd~~megWly 930 (1973)
T KOG4407|consen 915 HSIELFSDSEMEGWLY 930 (1973)
T ss_pred hhhhhhhhhhhhccee
Confidence 4455555555554443
No 10
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=89.22 E-value=2.9 Score=38.47 Aligned_cols=98 Identities=17% Similarity=0.193 Sum_probs=54.0
Q ss_pred cCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCeEEEEEeecC
Q 006986 354 NASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEFEPILIP 433 (622)
Q Consensus 354 g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvpFeF~~V~~~ 433 (622)
..+.-.|+|+|.+.| . ++..|+.+ | .++||++.. ...+.. ..+.+.-....
T Consensus 20 ~~~~~~vLDiGcG~G-~---~~~~l~~~--~----~~~~g~D~~------~~~~~~-----------~~~~~~~~~~~-- 70 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTG-S---FLRALAKR--G----FEVTGVDIS------PQMIEK-----------RNVVFDNFDAQ-- 70 (161)
T ss_dssp TTTTSEEEEESSTTS-H---HHHHHHHT--T----SEEEEEESS------HHHHHH-----------TTSEEEEEECH--
T ss_pred cCCCCEEEEEcCCCC-H---HHHHHHHh--C----CEEEEEECC------HHHHhh-----------hhhhhhhhhhh--
Confidence 456779999999999 3 45555544 3 289999742 111221 22222211111
Q ss_pred ccCccccCCccCCCceEEEeeeccccccccCchHHHHHHHHHH-HhcCCcE-EEEEeecCC
Q 006986 434 IRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMA-KSLNPIV-VTLAEYEAN 492 (622)
Q Consensus 434 ~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~i-r~L~P~I-vtl~E~Ea~ 492 (622)
+ .....+-+=+|-|...|||+.+ ...+|+.| +.|+|.- +++++....
T Consensus 71 --~-----~~~~~~~fD~i~~~~~l~~~~d-----~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 71 --D-----PPFPDGSFDLIICNDVLEHLPD-----PEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp --T-----HHCHSSSEEEEEEESSGGGSSH-----HHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred --h-----hhccccchhhHhhHHHHhhccc-----HHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 0 0112334446666788899874 35666655 6678875 445555543
No 11
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=89.03 E-value=24 Score=34.45 Aligned_cols=121 Identities=19% Similarity=0.242 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhh
Q 006986 341 YLTANQAILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGS 420 (622)
Q Consensus 341 h~tANqAILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~ 420 (622)
+......+++.+...+...|+|+|.+.|. +...++.+- +. ..++++|+.. ...+..+.+++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~----~~~~~~~~~--~~-~~~~~~iD~~------~~~~~~~~~~~~----- 85 (223)
T TIGR01934 24 HRLWRRRAVKLIGVFKGQKVLDVACGTGD----LAIELAKSA--PD-RGKVTGVDFS------SEMLEVAKKKSE----- 85 (223)
T ss_pred HHHHHHHHHHHhccCCCCeEEEeCCCCCh----hHHHHHHhc--CC-CceEEEEECC------HHHHHHHHHHhc-----
Confidence 33444566666665577899999999986 333444332 22 3689999742 123333333332
Q ss_pred cCCeEEEEEeecCccCccccCCccCCCceEEEeeeccccccccCchHHHHHHHH-HHHhcCCcE-EEEEeecC
Q 006986 421 LSLNLEFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQ-MAKSLNPIV-VTLAEYEA 491 (622)
Q Consensus 421 lgvpFeF~~V~~~~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~-~ir~L~P~I-vtl~E~Ea 491 (622)
.+-..+|. ...+.++. ..++.+=+|-+.+.+||+.+ ...+|+ ..+.|+|.- ++++|...
T Consensus 86 ~~~~i~~~--~~d~~~~~-----~~~~~~D~i~~~~~~~~~~~-----~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 86 LPLNIEFI--QADAEALP-----FEDNSFDAVTIAFGLRNVTD-----IQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred cCCCceEE--ecchhcCC-----CCCCcEEEEEEeeeeCCccc-----HHHHHHHHHHHcCCCcEEEEEEecC
Confidence 12223332 22222222 11222334445566777643 234555 446678885 44556543
No 12
>PLN02244 tocopherol O-methyltransferase
Probab=88.08 E-value=19 Score=38.84 Aligned_cols=102 Identities=19% Similarity=0.197 Sum_probs=54.9
Q ss_pred CeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCC--eEEEEEeecC
Q 006986 356 SHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSL--NLEFEPILIP 433 (622)
Q Consensus 356 ~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgv--pFeF~~V~~~ 433 (622)
+.-+|+|+|.|.|. +...|+.+- | .++|||+.. ...++. . .+.++..|+ ..+|. ...
T Consensus 118 ~~~~VLDiGCG~G~----~~~~La~~~-g----~~v~gvD~s------~~~i~~-a---~~~~~~~g~~~~v~~~--~~D 176 (340)
T PLN02244 118 RPKRIVDVGCGIGG----SSRYLARKY-G----ANVKGITLS------PVQAAR-A---NALAAAQGLSDKVSFQ--VAD 176 (340)
T ss_pred CCCeEEEecCCCCH----HHHHHHHhc-C----CEEEEEECC------HHHHHH-H---HHHHHhcCCCCceEEE--EcC
Confidence 44579999999995 455666554 2 488999742 122222 2 223344444 34443 222
Q ss_pred ccCccccCCccCCCceEEEeeeccccccccCchHHHHHHHH-HHHhcCCcE-EEEEe
Q 006986 434 IRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQ-MAKSLNPIV-VTLAE 488 (622)
Q Consensus 434 ~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~-~ir~L~P~I-vtl~E 488 (622)
..++. ..++.+=+|-+...+||+.+ ...+|+ ..|-|+|.- +++++
T Consensus 177 ~~~~~-----~~~~~FD~V~s~~~~~h~~d-----~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 177 ALNQP-----FEDGQFDLVWSMESGEHMPD-----KRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred cccCC-----CCCCCccEEEECCchhccCC-----HHHHHHHHHHHcCCCcEEEEEE
Confidence 22221 22333335556677888865 234444 557889974 44443
No 13
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.
Probab=87.00 E-value=0.19 Score=53.99 Aligned_cols=6 Identities=50% Similarity=1.365 Sum_probs=0.0
Q ss_pred CCCCCC
Q 006986 74 NFGYGF 79 (622)
Q Consensus 74 ~~g~~~ 79 (622)
..|||.
T Consensus 433 ~MGYgm 438 (468)
T PF11498_consen 433 GMGYGM 438 (468)
T ss_dssp ------
T ss_pred CcccCC
Confidence 345555
No 14
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=86.77 E-value=3.3 Score=36.11 Aligned_cols=105 Identities=20% Similarity=0.213 Sum_probs=57.6
Q ss_pred EEeecccccccchhHHHHHHhc-CCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCeEEEEEeecCccCc
Q 006986 359 HIVDFGIVQGIQWSFLLQALAN-RPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEFEPILIPIRKL 437 (622)
Q Consensus 359 HIVDfgI~~G~QWpsLiqaLA~-R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvpFeF~~V~~~~e~L 437 (622)
+|+|+|.+.|.-= ..|+. ++ ..|+|||+.. ...++...+++.+....-+|.| .. ..+ ..
T Consensus 4 ~vLDlGcG~G~~~----~~l~~~~~-----~~~v~gvD~s------~~~~~~a~~~~~~~~~~~~i~~--~~--~d~-~~ 63 (112)
T PF12847_consen 4 RVLDLGCGTGRLS----IALARLFP-----GARVVGVDIS------PEMLEIARERAAEEGLSDRITF--VQ--GDA-EF 63 (112)
T ss_dssp EEEEETTTTSHHH----HHHHHHHT-----TSEEEEEESS------HHHHHHHHHHHHHTTTTTTEEE--EE--SCC-HG
T ss_pred EEEEEcCcCCHHH----HHHHhcCC-----CCEEEEEeCC------HHHHHHHHHHHHhcCCCCCeEE--EE--Ccc-cc
Confidence 6899999999543 33333 23 2589999842 3456666666644333334443 32 222 01
Q ss_pred cccCCccCCCceEEEeeeccccccccCchHHHHHHHHHH-HhcCCcEEEEEe
Q 006986 438 RASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMA-KSLNPIVVTLAE 488 (622)
Q Consensus 438 ~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~i-r~L~P~Ivtl~E 488 (622)
..+ . ..+=++++.+. +.+++++.. ..+..+|+.+ +.|+|.-+++++
T Consensus 64 ~~~-~-~~~~D~v~~~~-~~~~~~~~~--~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 64 DPD-F-LEPFDLVICSG-FTLHFLLPL--DERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp GTT-T-SSCEEEEEECS-GSGGGCCHH--HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred Ccc-c-CCCCCEEEECC-Cccccccch--hHHHHHHHHHHHhcCCCcEEEEE
Confidence 100 0 11224555555 566766653 3456667755 678999776654
No 15
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=86.39 E-value=40 Score=35.06 Aligned_cols=189 Identities=17% Similarity=0.197 Sum_probs=105.5
Q ss_pred Cccchh-HHHHHHHHHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHH
Q 006986 335 PYSKFA-YLTANQAILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDR 413 (622)
Q Consensus 335 P~~kfa-h~tANqAILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~r 413 (622)
.++.|+ |.+=+++..+.+.-.+--+|+|.+.|.|-. .-.|+++-+ .-+|||+|.. ...|....+|
T Consensus 29 ~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~----a~~~~k~~g----~g~v~~~D~s------~~ML~~a~~k 94 (238)
T COG2226 29 DLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDM----ALLLAKSVG----TGEVVGLDIS------ESMLEVAREK 94 (238)
T ss_pred ccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHH----HHHHHHhcC----CceEEEEECC------HHHHHHHHHH
Confidence 556665 466677777766544789999999998852 333444432 4689999842 3456555555
Q ss_pred HHHHhhhcCCeEEEEEeecCccCccccCCccCCCceEEEeeeccccccccCchHHHHHHHH-HHHhcCCcEEEEEeecCC
Q 006986 414 LREFAGSLSLNLEFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQ-MAKSLNPIVVTLAEYEAN 492 (622)
Q Consensus 414 L~~fA~~lgvpFeF~~V~~~~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~-~ir~L~P~Ivtl~E~Ea~ 492 (622)
+.+ .|+-- ++-|....++|. ..++..=+|-+.|.||++.+ .+.+|+ +-|=|+|...+++=.=..
T Consensus 95 ~~~----~~~~~-i~fv~~dAe~LP-----f~D~sFD~vt~~fglrnv~d-----~~~aL~E~~RVlKpgG~~~vle~~~ 159 (238)
T COG2226 95 LKK----KGVQN-VEFVVGDAENLP-----FPDNSFDAVTISFGLRNVTD-----IDKALKEMYRVLKPGGRLLVLEFSK 159 (238)
T ss_pred hhc----cCccc-eEEEEechhhCC-----CCCCccCEEEeeehhhcCCC-----HHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 553 23221 333444555553 34555568899999998774 356666 557789998655522222
Q ss_pred CCCCchHHHHHHHHH-HHHH-HHhhhccCCCCCCHHHHHHHHHHhhhhhhhhhcccccCCccccccchhhHHHHHHhCCC
Q 006986 493 LNRTGFLARFKNALK-YYTA-VFESLEPNMTTDSDERFQVERQILGPRIANLLAPEKQGAKRERVEDIENWRIFMENSDF 570 (622)
Q Consensus 493 ~Ns~~F~~RF~eAL~-yYsa-lFDSLea~l~~~s~eR~~vE~~~lgreI~niVAcEgg~~R~ER~E~~~~Wr~rm~~AGF 570 (622)
...+. |..+++ ||.. ++=.+......+..+.. +|-+-|.... ..+.-...|+.+||
T Consensus 160 p~~~~----~~~~~~~~~~~~v~P~~g~~~~~~~~~y~-----yL~eSi~~~p-------------~~~~l~~~~~~~gf 217 (238)
T COG2226 160 PDNPV----LRKAYILYYFKYVLPLIGKLVAKDAEAYE-----YLAESIRRFP-------------DQEELKQMIEKAGF 217 (238)
T ss_pred CCchh----hHHHHHHHHHHhHhhhhceeeecChHHHH-----HHHHHHHhCC-------------CHHHHHHHHHhcCc
Confidence 22222 333333 4444 44444443332333322 2333343332 23344556788999
Q ss_pred cccC
Q 006986 571 EGIP 574 (622)
Q Consensus 571 ~~v~ 574 (622)
+.+.
T Consensus 218 ~~i~ 221 (238)
T COG2226 218 EEVR 221 (238)
T ss_pred eEEe
Confidence 8765
No 16
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=86.38 E-value=4.2 Score=38.02 Aligned_cols=108 Identities=20% Similarity=0.254 Sum_probs=59.3
Q ss_pred CCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCe-EEEEEeecC
Q 006986 355 ASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLN-LEFEPILIP 433 (622)
Q Consensus 355 ~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvp-FeF~~V~~~ 433 (622)
.+..+|+|+|.|.|.-=-.|.+.+ ++ ..+|||||.. ...+ ++..+.++.++++ .+|. ...
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~-----~~--~~~i~gvD~s------~~~i----~~a~~~~~~~~~~ni~~~--~~d 62 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKEL-----NP--GAKIIGVDIS------EEMI----EYAKKRAKELGLDNIEFI--QGD 62 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHS-----TT--TSEEEEEESS------HHHH----HHHHHHHHHTTSTTEEEE--ESB
T ss_pred CCCCEEEEecCcCcHHHHHHHHhc-----CC--CCEEEEEECc------HHHH----HHhhcccccccccccceE--Eee
Confidence 356799999999996544444422 11 2469999842 2223 3344456667776 5544 445
Q ss_pred ccCccccCCccCCCceEEEeeeccccccccCchHHHHHHHH-HHHhcCCcEEEEE-eec
Q 006986 434 IRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQ-MAKSLNPIVVTLA-EYE 490 (622)
Q Consensus 434 ~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~-~ir~L~P~Ivtl~-E~E 490 (622)
+.++... +. +.+=+|.+...|||+.+ . ..+|+ ..+.|+|..++++ +..
T Consensus 63 ~~~l~~~-~~---~~~D~I~~~~~l~~~~~----~-~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 63 IEDLPQE-LE---EKFDIIISNGVLHHFPD----P-EKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TTCGCGC-SS---TTEEEEEEESTGGGTSH----H-HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhccccc-cC---CCeeEEEEcCchhhccC----H-HHHHHHHHHHcCCCcEEEEEECC
Confidence 5555432 32 33334444455576553 2 34444 5688898865544 444
No 17
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=85.64 E-value=57 Score=36.57 Aligned_cols=113 Identities=17% Similarity=0.087 Sum_probs=61.8
Q ss_pred HHHHHHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCC
Q 006986 344 ANQAILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSL 423 (622)
Q Consensus 344 ANqAILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgv 423 (622)
....+++.+.-.+.-+|+|+|.|.|. +...|+.+. | .++|||+.. ...+..+.++. ...+.
T Consensus 254 ~te~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~-~----~~v~gvDiS------~~~l~~A~~~~----~~~~~ 314 (475)
T PLN02336 254 TTKEFVDKLDLKPGQKVLDVGCGIGG----GDFYMAENF-D----VHVVGIDLS------VNMISFALERA----IGRKC 314 (475)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCCH----HHHHHHHhc-C----CEEEEEECC------HHHHHHHHHHh----hcCCC
Confidence 44566666643445689999999995 345566654 2 489999852 23344333322 22333
Q ss_pred eEEEEEeecCccCccccCCccCCCceEEEeeeccccccccCchHHHHHHHH-HHHhcCCcEEEEE
Q 006986 424 NLEFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQ-MAKSLNPIVVTLA 487 (622)
Q Consensus 424 pFeF~~V~~~~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~-~ir~L~P~Ivtl~ 487 (622)
..+|... .+.++. +..+.+=+|-|...++|+.+ . ..+|+ ..|.|+|.-.++.
T Consensus 315 ~v~~~~~--d~~~~~-----~~~~~fD~I~s~~~l~h~~d----~-~~~l~~~~r~LkpgG~l~i 367 (475)
T PLN02336 315 SVEFEVA--DCTKKT-----YPDNSFDVIYSRDTILHIQD----K-PALFRSFFKWLKPGGKVLI 367 (475)
T ss_pred ceEEEEc--CcccCC-----CCCCCEEEEEECCcccccCC----H-HHHHHHHHHHcCCCeEEEE
Confidence 4444322 222221 11222335556667788754 2 34444 5578899976554
No 18
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=84.89 E-value=7.6 Score=39.72 Aligned_cols=105 Identities=18% Similarity=0.169 Sum_probs=59.7
Q ss_pred HHHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCeEE
Q 006986 347 AILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLE 426 (622)
Q Consensus 347 AILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvpFe 426 (622)
.+++.+.-...-+|+|+|.|.|. +...|+.+- | ..++|||+.. .. ..+.|+..++.|.
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~----~~~~l~~~~---p-~~~v~gvD~s------~~--------~~~~a~~~~~~~~ 77 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGN----LTRYLARRW---P-GAVIEALDSS------PE--------MVAAARERGVDAR 77 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCH----HHHHHHHHC---C-CCEEEEEECC------HH--------HHHHHHhcCCcEE
Confidence 56676665566789999999994 556677653 2 2589999842 12 2233444455442
Q ss_pred EEEeecCccCccccCCccCCCceEEEeeeccccccccCchHHHHHHHH-HHHhcCCcEEEEEe
Q 006986 427 FEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQ-MAKSLNPIVVTLAE 488 (622)
Q Consensus 427 F~~V~~~~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~-~ir~L~P~Ivtl~E 488 (622)
....+++. ..+.+=+|-|...|||+.+ . ..+|+ ..+.|+|.-.++.+
T Consensus 78 ----~~d~~~~~------~~~~fD~v~~~~~l~~~~d----~-~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 78 ----TGDVRDWK------PKPDTDVVVSNAALQWVPE----H-ADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred ----EcChhhCC------CCCCceEEEEehhhhhCCC----H-HHHHHHHHHhCCCCcEEEEE
Confidence 22233321 1222334445556788753 2 34444 55789999766554
No 19
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=84.60 E-value=14 Score=39.94 Aligned_cols=100 Identities=15% Similarity=0.150 Sum_probs=54.6
Q ss_pred CeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCC--eEEEEEeecC
Q 006986 356 SHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSL--NLEFEPILIP 433 (622)
Q Consensus 356 ~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgv--pFeF~~V~~~ 433 (622)
+...|+|+|.|.|. +...|+.+ + .++||||.. ...++...++ ++..++ ..+|. ...
T Consensus 131 ~g~~ILDIGCG~G~----~s~~La~~-g-----~~V~GID~s------~~~i~~Ar~~----~~~~~~~~~i~~~--~~d 188 (322)
T PLN02396 131 EGLKFIDIGCGGGL----LSEPLARM-G-----ATVTGVDAV------DKNVKIARLH----ADMDPVTSTIEYL--CTT 188 (322)
T ss_pred CCCEEEEeeCCCCH----HHHHHHHc-C-----CEEEEEeCC------HHHHHHHHHH----HHhcCcccceeEE--ecC
Confidence 34579999999998 45577643 2 479999842 2333332222 221121 23333 233
Q ss_pred ccCccccCCccCCCceEEEeeeccccccccCchHHHHHHHHHH-HhcCCcEEEEE
Q 006986 434 IRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMA-KSLNPIVVTLA 487 (622)
Q Consensus 434 ~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~i-r~L~P~Ivtl~ 487 (622)
.+++.. ..+.+=+|-|...|||+.+. +.+|+.+ +-|+|.-.++.
T Consensus 189 ae~l~~-----~~~~FD~Vi~~~vLeHv~d~-----~~~L~~l~r~LkPGG~lii 233 (322)
T PLN02396 189 AEKLAD-----EGRKFDAVLSLEVIEHVANP-----AEFCKSLSALTIPNGATVL 233 (322)
T ss_pred HHHhhh-----ccCCCCEEEEhhHHHhcCCH-----HHHHHHHHHHcCCCcEEEE
Confidence 344321 12223356667788998752 4566644 56799866554
No 20
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=84.25 E-value=14 Score=39.14 Aligned_cols=117 Identities=19% Similarity=0.122 Sum_probs=68.6
Q ss_pred HHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCeEEE
Q 006986 348 ILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEF 427 (622)
Q Consensus 348 ILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvpFeF 427 (622)
|.+++. ....|||+|.|.|.-=..|+++|.. ..++|+||.. .+.|+.+.++|.+ +.-++.+
T Consensus 57 ia~~~~--~~~~iLELGcGtG~~t~~Ll~~l~~-------~~~~~~iDiS------~~mL~~a~~~l~~--~~p~~~v-- 117 (301)
T TIGR03438 57 IAAATG--AGCELVELGSGSSRKTRLLLDALRQ-------PARYVPIDIS------ADALKESAAALAA--DYPQLEV-- 117 (301)
T ss_pred HHHhhC--CCCeEEecCCCcchhHHHHHHhhcc-------CCeEEEEECC------HHHHHHHHHHHHh--hCCCceE--
Confidence 444443 2357999999999877778888743 2689999853 4567777777764 1123443
Q ss_pred EEeecCccC-ccccCCccCCCceEEEeeeccccccccCchHHHHHHHHHH-HhcCCcEEEEE
Q 006986 428 EPILIPIRK-LRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMA-KSLNPIVVTLA 487 (622)
Q Consensus 428 ~~V~~~~e~-L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~i-r~L~P~Ivtl~ 487 (622)
..|.....+ +.... ....+..+++.+...++++.. .....+|+.| +.|+|.-+.+.
T Consensus 118 ~~i~gD~~~~~~~~~-~~~~~~~~~~~~gs~~~~~~~---~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 118 HGICADFTQPLALPP-EPAAGRRLGFFPGSTIGNFTP---EEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred EEEEEcccchhhhhc-ccccCCeEEEEecccccCCCH---HHHHHHHHHHHHhcCCCCEEEE
Confidence 334433322 11000 011124667776677777643 3446777766 67899755443
No 21
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=83.33 E-value=8.3 Score=38.08 Aligned_cols=111 Identities=16% Similarity=0.152 Sum_probs=61.0
Q ss_pred HHHHHHHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcC
Q 006986 343 TANQAILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLS 422 (622)
Q Consensus 343 tANqAILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lg 422 (622)
++...|++++.-.+.-+|+|+|.|.|.--. .||.+ | .++||||.. ...++. +.+.++..|
T Consensus 17 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~a~----~la~~--g----~~V~~iD~s------~~~l~~----a~~~~~~~~ 76 (195)
T TIGR00477 17 TTHSAVREAVKTVAPCKTLDLGCGQGRNSL----YLSLA--G----YDVRAWDHN------PASIAS----VLDMKAREN 76 (195)
T ss_pred CchHHHHHHhccCCCCcEEEeCCCCCHHHH----HHHHC--C----CeEEEEECC------HHHHHH----HHHHHHHhC
Confidence 556788888876666799999999997443 34444 3 378999742 122332 333444556
Q ss_pred CeEEEEEeecCccCccccCCccCCCceEEEeeeccccccccCchHHHHHHHHH-HHhcCCcEE
Q 006986 423 LNLEFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQM-AKSLNPIVV 484 (622)
Q Consensus 423 vpFeF~~V~~~~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~-ir~L~P~Iv 484 (622)
++..+... .+.... +. ..=+.|+.+ +.+||+.. ..+..+++. .|.|+|.-+
T Consensus 77 ~~v~~~~~--d~~~~~---~~-~~fD~I~~~--~~~~~~~~---~~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 77 LPLRTDAY--DINAAA---LN-EDYDFIFST--VVFMFLQA---GRVPEIIANMQAHTRPGGY 128 (195)
T ss_pred CCceeEec--cchhcc---cc-CCCCEEEEe--cccccCCH---HHHHHHHHHHHHHhCCCcE
Confidence 66443322 121111 11 112344433 34566642 234566665 477899964
No 22
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=81.30 E-value=11 Score=39.37 Aligned_cols=107 Identities=21% Similarity=0.203 Sum_probs=56.7
Q ss_pred HHHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCeEE
Q 006986 347 AILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLE 426 (622)
Q Consensus 347 AILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvpFe 426 (622)
.+++++...+.-+|+|+|.|.|. +...||.+ | .++||||.. ...++ .+.+.|+..+++++
T Consensus 111 ~~~~~~~~~~~~~vLDlGcG~G~----~~~~la~~--g----~~V~avD~s------~~ai~----~~~~~~~~~~l~v~ 170 (287)
T PRK12335 111 EVLEAVQTVKPGKALDLGCGQGR----NSLYLALL--G----FDVTAVDIN------QQSLE----NLQEIAEKENLNIR 170 (287)
T ss_pred HHHHHhhccCCCCEEEeCCCCCH----HHHHHHHC--C----CEEEEEECC------HHHHH----HHHHHHHHcCCceE
Confidence 45555432223389999999997 33445554 3 489999742 22233 34455566677655
Q ss_pred EEEeecCccCccccCCccCCCceEEEeeeccccccccCchHHHHHHHHH-HHhcCCcEE
Q 006986 427 FEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQM-AKSLNPIVV 484 (622)
Q Consensus 427 F~~V~~~~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~-ir~L~P~Iv 484 (622)
+... .+.+. .+. ..=++|+.+ +.|||+.. ..+..+|+. .+.|+|.-+
T Consensus 171 ~~~~--D~~~~---~~~-~~fD~I~~~--~vl~~l~~---~~~~~~l~~~~~~LkpgG~ 218 (287)
T PRK12335 171 TGLY--DINSA---SIQ-EEYDFILST--VVLMFLNR---ERIPAIIKNMQEHTNPGGY 218 (287)
T ss_pred EEEe--chhcc---ccc-CCccEEEEc--chhhhCCH---HHHHHHHHHHHHhcCCCcE
Confidence 5322 22211 111 111344443 34677642 345566664 477899865
No 23
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=81.22 E-value=4.4 Score=35.15 Aligned_cols=97 Identities=25% Similarity=0.299 Sum_probs=51.4
Q ss_pred EeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCeEEEEEeecCccCccc
Q 006986 360 IVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEFEPILIPIRKLRA 439 (622)
Q Consensus 360 IVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvpFeF~~V~~~~e~L~~ 439 (622)
|+|+|.|.|.-=..|.+.+ . .|+ ..+++|||.. ...|+.+.++..+ .+++.+| +...+.++..
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~--~~~--~~~~~gvD~s------~~~l~~~~~~~~~----~~~~~~~--~~~D~~~l~~ 63 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-D--AGP--SSRVIGVDIS------PEMLELAKKRFSE----DGPKVRF--VQADARDLPF 63 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS----------SEEEEEES-------HHHHHHHHHHSHH----TTTTSEE--EESCTTCHHH
T ss_pred CEEeecCCcHHHHHHHHHh-h--hcc--cceEEEEECC------HHHHHHHHHhchh----cCCceEE--EECCHhHCcc
Confidence 7999999998888888776 2 233 3799999842 3445444443333 4455555 4444444431
Q ss_pred cCCccCCCce-EEEeeeccccccccCchHHHHHHHHHH-HhcCC
Q 006986 440 SSFRVDPNEA-LVVNFMLQLNSLLDDNRLAVENALQMA-KSLNP 481 (622)
Q Consensus 440 ~~l~~~~~Ea-LaVN~~~~Lh~Ll~~~~~~~~~~L~~i-r~L~P 481 (622)
..+.+ +||++...+||+-+ ..+..+|+.+ +-|+|
T Consensus 64 -----~~~~~D~v~~~~~~~~~~~~---~~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 64 -----SDGKFDLVVCSGLSLHHLSP---EELEALLRRIARLLRP 99 (101)
T ss_dssp -----HSSSEEEEEE-TTGGGGSSH---HHHHHHHHHHHHTEEE
T ss_pred -----cCCCeeEEEEcCCccCCCCH---HHHHHHHHHHHHHhCC
Confidence 22233 34444555888543 4556677655 34444
No 24
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=80.52 E-value=0.58 Score=57.48 Aligned_cols=8 Identities=13% Similarity=0.202 Sum_probs=3.5
Q ss_pred ccchhHHH
Q 006986 368 GIQWSFLL 375 (622)
Q Consensus 368 G~QWpsLi 375 (622)
+.-|..++
T Consensus 1121 k~~Wkk~~ 1128 (1973)
T KOG4407|consen 1121 KRKWKKSK 1128 (1973)
T ss_pred ccchhhhh
Confidence 34444444
No 25
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=79.35 E-value=20 Score=40.09 Aligned_cols=113 Identities=15% Similarity=0.105 Sum_probs=58.5
Q ss_pred HHHHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCeE
Q 006986 346 QAILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNL 425 (622)
Q Consensus 346 qAILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvpF 425 (622)
..|++.+.....-+|+|+|.|.|.-- ..|+.+ + -+++||+.. ...++.. +.+. . ..-..
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~----~~la~~--~----~~v~giD~s------~~~l~~a-~~~~---~-~~~~i 85 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFT----GELAKK--A----GQVIALDFI------ESVIKKN-ESIN---G-HYKNV 85 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHH----HHHHhh--C----CEEEEEeCC------HHHHHHH-HHHh---c-cCCce
Confidence 45666665544458999999999544 445544 2 178999742 1223221 1111 1 11123
Q ss_pred EEEEeecCccCccccCCccCCCceEEEeeeccccccccCchHHHHHHHHHH-HhcCCcEEEEE
Q 006986 426 EFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMA-KSLNPIVVTLA 487 (622)
Q Consensus 426 eF~~V~~~~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~i-r~L~P~Ivtl~ 487 (622)
+|. ...+.+. .+....+.+=+|-|.+.|||+.++ .+..+|+.+ |-|+|.-+++.
T Consensus 86 ~~~--~~d~~~~---~~~~~~~~fD~I~~~~~l~~l~~~---~~~~~l~~~~r~Lk~gG~l~~ 140 (475)
T PLN02336 86 KFM--CADVTSP---DLNISDGSVDLIFSNWLLMYLSDK---EVENLAERMVKWLKVGGYIFF 140 (475)
T ss_pred EEE--Eeccccc---ccCCCCCCEEEEehhhhHHhCCHH---HHHHHHHHHHHhcCCCeEEEE
Confidence 332 2122111 112223333355566778888652 346677655 55899976554
No 26
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=78.08 E-value=13 Score=37.63 Aligned_cols=111 Identities=23% Similarity=0.222 Sum_probs=57.5
Q ss_pred HHHHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCeE
Q 006986 346 QAILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNL 425 (622)
Q Consensus 346 qAILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvpF 425 (622)
..++++..=.+.-+|||+|-+.|. +..+|+.+. | .+|+|..|.|.. ++ ..+. .=..
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~----~~~~l~~~~---P-~l~~~v~Dlp~v-------~~-~~~~--------~~rv 145 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGH----FAIALARAY---P-NLRATVFDLPEV-------IE-QAKE--------ADRV 145 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSH----HHHHHHHHS---T-TSEEEEEE-HHH-------HC-CHHH--------TTTE
T ss_pred hhhhccccccCccEEEeccCcchH----HHHHHHHHC---C-CCcceeeccHhh-------hh-cccc--------cccc
Confidence 455666655555689999999993 344444443 4 589999987632 21 1221 1122
Q ss_pred EEEEeecCccCccccCCccCCCceEEEeeeccccccccCchHHHHHHHHHH-HhcCCc---EEEEEeecCCC
Q 006986 426 EFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMA-KSLNPI---VVTLAEYEANL 493 (622)
Q Consensus 426 eF~~V~~~~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~i-r~L~P~---Ivtl~E~Ea~~ 493 (622)
+|.+- ++- +.+. . +=+|-+..-||+..++ ....+|++| +.|+|. .++|.|.=.+.
T Consensus 146 ~~~~g-----d~f-~~~P---~-~D~~~l~~vLh~~~d~---~~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 146 EFVPG-----DFF-DPLP---V-ADVYLLRHVLHDWSDE---DCVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp EEEES------TT-TCCS---S-ESEEEEESSGGGS-HH---HHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred ccccc-----cHH-hhhc---c-ccceeeehhhhhcchH---HHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 33221 111 1122 1 3344445556665542 345666655 778876 67777765443
No 27
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=77.89 E-value=74 Score=31.29 Aligned_cols=42 Identities=14% Similarity=0.052 Sum_probs=25.5
Q ss_pred HHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCC
Q 006986 348 ILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPA 396 (622)
Q Consensus 348 ILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~ 396 (622)
+++.+.-....+|+|+|.+.|.= ...|+.+ +++ ..++++++.
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~~----~~~l~~~--~~~-~~~v~~~D~ 84 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGDL----AIALAKA--VGK-TGEVVGLDF 84 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCHH----HHHHHHH--cCC-CCeEEEEeC
Confidence 44444433457899999999862 2233332 122 578999974
No 28
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=76.85 E-value=25 Score=34.77 Aligned_cols=112 Identities=18% Similarity=0.247 Sum_probs=58.5
Q ss_pred HHHHHHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCC
Q 006986 344 ANQAILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSL 423 (622)
Q Consensus 344 ANqAILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgv 423 (622)
++..+++.+.....-+|+|+|.|.|. +...||.+ | .+||||+.. ...++.. +++ ++..++
T Consensus 18 ~~~~l~~~l~~~~~~~vLDiGcG~G~----~a~~La~~--g----~~V~gvD~S------~~~i~~a-~~~---~~~~~~ 77 (197)
T PRK11207 18 THSEVLEAVKVVKPGKTLDLGCGNGR----NSLYLAAN--G----FDVTAWDKN------PMSIANL-ERI---KAAENL 77 (197)
T ss_pred ChHHHHHhcccCCCCcEEEECCCCCH----HHHHHHHC--C----CEEEEEeCC------HHHHHHH-HHH---HHHcCC
Confidence 34566666665555689999999997 33445654 3 389999742 1223332 222 233344
Q ss_pred e-EEEEEeecCccCccccCCccCCCceEEEeeeccccccccCchHHHHHHHH-HHHhcCCcEEEE
Q 006986 424 N-LEFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQ-MAKSLNPIVVTL 486 (622)
Q Consensus 424 p-FeF~~V~~~~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~-~ir~L~P~Ivtl 486 (622)
. .++ +...+.++. +. ..=++|+.+ +.+|++.. ..+..+++ ..+.|+|.-+++
T Consensus 78 ~~v~~--~~~d~~~~~---~~-~~fD~I~~~--~~~~~~~~---~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 78 DNLHT--AVVDLNNLT---FD-GEYDFILST--VVLMFLEA---KTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred CcceE--EecChhhCC---cC-CCcCEEEEe--cchhhCCH---HHHHHHHHHHHHHcCCCcEEE
Confidence 3 222 222333222 11 112344444 44566542 23456666 447789997543
No 29
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=76.84 E-value=43 Score=36.34 Aligned_cols=116 Identities=14% Similarity=0.149 Sum_probs=63.4
Q ss_pred CeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhh---cCCeEEEEEeec
Q 006986 356 SHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGS---LSLNLEFEPILI 432 (622)
Q Consensus 356 ~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~---lgvpFeF~~V~~ 432 (622)
...+|+|++.|.|. .|.+-... + + =++.|||. ...+++++.+|..+.-+. -...+.|.....
T Consensus 62 ~~~~VLDl~CGkGG---DL~Kw~~~---~-i--~~~vg~Di------s~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~ 126 (331)
T PF03291_consen 62 PGLTVLDLCCGKGG---DLQKWQKA---K-I--KHYVGIDI------SEESIEEARERYKQLKKRNNSKQYRFDFIAEFI 126 (331)
T ss_dssp TT-EEEEET-TTTT---THHHHHHT---T----SEEEEEES-------HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEE
T ss_pred CCCeEEEecCCCch---hHHHHHhc---C-C--CEEEEEeC------CHHHHHHHHHHHHHhccccccccccccchhhee
Confidence 67999999999884 22222322 2 2 26678874 256789998888554432 223344443321
Q ss_pred CccCccc---cCCccCCCceEEEeeeccccccccCchHHHHHHHH-HHHhcCCcEEEEE
Q 006986 433 PIRKLRA---SSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQ-MAKSLNPIVVTLA 487 (622)
Q Consensus 433 ~~e~L~~---~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~-~ir~L~P~Ivtl~ 487 (622)
..+.... +.+.-.....=+|+|+|.||++......+ ..+|+ .-+.|+|.-+.++
T Consensus 127 ~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~a-r~~l~Nvs~~Lk~GG~FIg 184 (331)
T PF03291_consen 127 AADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKA-RQFLKNVSSLLKPGGYFIG 184 (331)
T ss_dssp ESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHH-HHHHHHHHHTEEEEEEEEE
T ss_pred ccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHH-HHHHHHHHHhcCCCCEEEE
Confidence 1111111 11221224666999999999998744434 44555 5588999965543
No 30
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=76.58 E-value=19 Score=37.76 Aligned_cols=139 Identities=19% Similarity=0.220 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHHhhc----CCeeEEeeccccccc-chhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHH
Q 006986 339 FAYLTANQAILEATEN----ASHIHIVDFGIVQGI-QWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDR 413 (622)
Q Consensus 339 fah~tANqAILEA~~g----~~~VHIVDfgI~~G~-QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~r 413 (622)
-+++++-..||+.++. -+--+|+|||-|-|. =|+. .+.+ + ...++|.|+.. ..+.+.|++
T Consensus 12 p~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa-~~~~---~----~~~~~~~vd~s-------~~~~~l~~~ 76 (274)
T PF09243_consen 12 PATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAA-REVW---P----SLKEYTCVDRS-------PEMLELAKR 76 (274)
T ss_pred hHHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHH-HHHh---c----CceeeeeecCC-------HHHHHHHHH
Confidence 3566777777777753 355699999999884 3322 2222 1 24689999742 335567777
Q ss_pred HHHHhhhcCCeEEEEEeecCccCccccCCccCCCceEEEeeeccccccccCchHHHHHHHHHH-HhcCCcEEEEEeecCC
Q 006986 414 LREFAGSLSLNLEFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMA-KSLNPIVVTLAEYEAN 492 (622)
Q Consensus 414 L~~fA~~lgvpFeF~~V~~~~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~i-r~L~P~Ivtl~E~Ea~ 492 (622)
|.+-...... .+.. ..+..+...+.+.+.|++ .+.|-.|.+ ..+..+++.+ +.+++ ++||+|.-..
T Consensus 77 l~~~~~~~~~-~~~~------~~~~~~~~~~~~~DLvi~--s~~L~EL~~---~~r~~lv~~LW~~~~~-~LVlVEpGt~ 143 (274)
T PF09243_consen 77 LLRAGPNNRN-AEWR------RVLYRDFLPFPPDDLVIA--SYVLNELPS---AARAELVRSLWNKTAP-VLVLVEPGTP 143 (274)
T ss_pred HHhccccccc-chhh------hhhhcccccCCCCcEEEE--ehhhhcCCc---hHHHHHHHHHHHhccC-cEEEEcCCCh
Confidence 7653221110 0011 111111122333334333 233334433 4566777766 55666 8888887653
Q ss_pred CCCCchHHHHHHHH
Q 006986 493 LNRTGFLARFKNAL 506 (622)
Q Consensus 493 ~Ns~~F~~RF~eAL 506 (622)
. .-..+.+.++.|
T Consensus 144 ~-Gf~~i~~aR~~l 156 (274)
T PF09243_consen 144 A-GFRRIAEARDQL 156 (274)
T ss_pred H-HHHHHHHHHHHH
Confidence 3 234555666555
No 31
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=74.92 E-value=20 Score=29.51 Aligned_cols=93 Identities=19% Similarity=0.122 Sum_probs=50.6
Q ss_pred eecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCeEEEEEeecCccCcccc
Q 006986 361 VDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEFEPILIPIRKLRAS 440 (622)
Q Consensus 361 VDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvpFeF~~V~~~~e~L~~~ 440 (622)
+|+|.+.|.-...|.+. + -.++|+++.. ...++. ..+..+..++.| +....++
T Consensus 1 LdiG~G~G~~~~~l~~~-----~----~~~v~~~D~~------~~~~~~----~~~~~~~~~~~~----~~~d~~~---- 53 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-----G----GASVTGIDIS------EEMLEQ----ARKRLKNEGVSF----RQGDAED---- 53 (95)
T ss_dssp EEET-TTSHHHHHHHHT-----T----TCEEEEEES-------HHHHHH----HHHHTTTSTEEE----EESBTTS----
T ss_pred CEecCcCCHHHHHHHhc-----c----CCEEEEEeCC------HHHHHH----HHhcccccCchh----eeehHHh----
Confidence 58888888777666555 1 2688999742 222332 333333444442 2222333
Q ss_pred CCccCCCceEEEeeeccccccccCchHHHHHHHH-HHHhcCCcEEEE
Q 006986 441 SFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQ-MAKSLNPIVVTL 486 (622)
Q Consensus 441 ~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~-~ir~L~P~Ivtl 486 (622)
+...++.+=+|-+...+||+ . ....+++ ..|-|+|.-+.+
T Consensus 54 -l~~~~~sfD~v~~~~~~~~~-~----~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 54 -LPFPDNSFDVVFSNSVLHHL-E----DPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp -SSS-TT-EEEEEEESHGGGS-S----HHHHHHHHHHHHEEEEEEEE
T ss_pred -Cccccccccccccccceeec-c----CHHHHHHHHHHHcCcCeEEe
Confidence 33445566678888888888 2 2344444 557788876543
No 32
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=74.25 E-value=33 Score=34.32 Aligned_cols=101 Identities=17% Similarity=0.099 Sum_probs=54.8
Q ss_pred eEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCeEEEEEeecCccCc
Q 006986 358 IHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEFEPILIPIRKL 437 (622)
Q Consensus 358 VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvpFeF~~V~~~~e~L 437 (622)
-.|+|+|.|.|.--..|.+.+ + ..++|||+.. ...++.+.+++ -++.+. ...+.+
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~---~-----~~~v~giDiS------~~~l~~A~~~~------~~~~~~----~~d~~~- 99 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLL---P-----FKHIYGVEIN------EYAVEKAKAYL------PNINII----QGSLFD- 99 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhC---C-----CCeEEEEECC------HHHHHHHHhhC------CCCcEE----EeeccC-
Confidence 359999999996554443322 1 2589999742 23344333222 123221 111111
Q ss_pred cccCCccCCCceEEEeeeccccccccCchHHHHHHHHHHHhcCCcEEEEEeecC
Q 006986 438 RASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMAKSLNPIVVTLAEYEA 491 (622)
Q Consensus 438 ~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~ir~L~P~Ivtl~E~Ea 491 (622)
. ...+..=+|-+...|||+. +..+..+++.+.+..-+.++++|...
T Consensus 100 ---~--~~~~sfD~V~~~~vL~hl~---p~~~~~~l~el~r~~~~~v~i~e~~~ 145 (204)
T TIGR03587 100 ---P--FKDNFFDLVLTKGVLIHIN---PDNLPTAYRELYRCSNRYILIAEYYN 145 (204)
T ss_pred ---C--CCCCCEEEEEECChhhhCC---HHHHHHHHHHHHhhcCcEEEEEEeeC
Confidence 1 1122222344566677873 34567777777777667888888754
No 33
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=74.15 E-value=3.5 Score=50.67 Aligned_cols=9 Identities=33% Similarity=0.283 Sum_probs=3.6
Q ss_pred chhHHHHHH
Q 006986 10 NLMAVAQQV 18 (622)
Q Consensus 10 ~~~~~~~q~ 18 (622)
|..+.+||+
T Consensus 1854 ~~q~~qqq~ 1862 (2131)
T KOG4369|consen 1854 NIQQQQQQQ 1862 (2131)
T ss_pred HHHHHHHHH
Confidence 333444443
No 34
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=73.38 E-value=22 Score=36.42 Aligned_cols=111 Identities=13% Similarity=0.058 Sum_probs=59.1
Q ss_pred HHHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCeEE
Q 006986 347 AILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLE 426 (622)
Q Consensus 347 AILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvpFe 426 (622)
.|++.+. .+.-+|+|+|.|.|. +...|+.+ | .++|||+.. ...++.+.+++ +..|+.-.
T Consensus 36 ~~l~~l~-~~~~~vLDiGcG~G~----~a~~la~~--g----~~v~~vD~s------~~~l~~a~~~~----~~~g~~~~ 94 (255)
T PRK11036 36 RLLAELP-PRPLRVLDAGGGEGQ----TAIKLAEL--G----HQVILCDLS------AEMIQRAKQAA----EAKGVSDN 94 (255)
T ss_pred HHHHhcC-CCCCEEEEeCCCchH----HHHHHHHc--C----CEEEEEECC------HHHHHHHHHHH----HhcCCccc
Confidence 4666665 345699999999994 45566655 3 378999742 23344444433 33454322
Q ss_pred EEEeecCccCccccCCccCCCceEEEeeeccccccccCchHHHHHHHHHHHhcCCcEEEE
Q 006986 427 FEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMAKSLNPIVVTL 486 (622)
Q Consensus 427 F~~V~~~~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~ir~L~P~Ivtl 486 (622)
...+...+.++.. + .++.+=+|-|...|||+.+ +...+-+..+-|+|.-.++
T Consensus 95 v~~~~~d~~~l~~--~--~~~~fD~V~~~~vl~~~~~----~~~~l~~~~~~LkpgG~l~ 146 (255)
T PRK11036 95 MQFIHCAAQDIAQ--H--LETPVDLILFHAVLEWVAD----PKSVLQTLWSVLRPGGALS 146 (255)
T ss_pred eEEEEcCHHHHhh--h--cCCCCCEEEehhHHHhhCC----HHHHHHHHHHHcCCCeEEE
Confidence 2233333433321 1 1122223345566777753 2233334557889996554
No 35
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=72.75 E-value=6.2 Score=41.12 Aligned_cols=43 Identities=19% Similarity=0.150 Sum_probs=29.2
Q ss_pred cCCeeEEeecccccccchhHHHHHHhcCC-CCCCceEEEeecCC
Q 006986 354 NASHIHIVDFGIVQGIQWSFLLQALANRP-TGKPVKVRISGIPA 396 (622)
Q Consensus 354 g~~~VHIVDfgI~~G~QWpsLiqaLA~R~-~GpP~~LRITgI~~ 396 (622)
..+.++|.|.|.+.|--.-+|--.|++.- ......++|+|+|.
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Di 140 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDI 140 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEEC
Confidence 34579999999999987666655555431 11122589999984
No 36
>COG5624 TAF61 Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=72.21 E-value=2.1 Score=47.09 Aligned_cols=14 Identities=29% Similarity=0.743 Sum_probs=7.7
Q ss_pred CCCCCccccccCCC
Q 006986 141 SNLPPACDAWQNNA 154 (622)
Q Consensus 141 ~~~~~~~~~~~~~~ 154 (622)
+-.|.+|.+.-.|+
T Consensus 318 s~~p~~~s~~p~~p 331 (505)
T COG5624 318 SRFPGTCSIYPENP 331 (505)
T ss_pred ccCCceeecccCCC
Confidence 34466776654444
No 37
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=71.53 E-value=26 Score=34.27 Aligned_cols=39 Identities=31% Similarity=0.400 Sum_probs=25.1
Q ss_pred HHHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCC
Q 006986 347 AILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPA 396 (622)
Q Consensus 347 AILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~ 396 (622)
.|++.+... -+|+|+|.|.|. ++..|+.+. + .+++||+.
T Consensus 6 ~i~~~i~~~--~~iLDiGcG~G~----~~~~l~~~~-~----~~~~giD~ 44 (194)
T TIGR02081 6 SILNLIPPG--SRVLDLGCGDGE----LLALLRDEK-Q----VRGYGIEI 44 (194)
T ss_pred HHHHhcCCC--CEEEEeCCCCCH----HHHHHHhcc-C----CcEEEEeC
Confidence 345555432 379999999995 556776553 2 35688873
No 38
>PRK08317 hypothetical protein; Provisional
Probab=71.14 E-value=1.1e+02 Score=29.95 Aligned_cols=42 Identities=29% Similarity=0.371 Sum_probs=26.9
Q ss_pred HHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCC
Q 006986 348 ILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPA 396 (622)
Q Consensus 348 ILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~ 396 (622)
+++.+.-...-+|+|+|.+.|. |. ..++.+- | | .-+++||+.
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~-~~---~~~a~~~-~-~-~~~v~~~d~ 52 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGN-DA---RELARRV-G-P-EGRVVGIDR 52 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCH-HH---HHHHHhc-C-C-CcEEEEEeC
Confidence 5566665566789999999885 33 3344332 2 2 358999974
No 39
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=69.89 E-value=52 Score=35.45 Aligned_cols=103 Identities=19% Similarity=0.195 Sum_probs=56.7
Q ss_pred CeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHh-hh-cCCeEEEEEeecC
Q 006986 356 SHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFA-GS-LSLNLEFEPILIP 433 (622)
Q Consensus 356 ~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA-~~-lgvpFeF~~V~~~ 433 (622)
+...|+|+|.|.|. +...|+.+ | .+|||||.. ...++...++..+.- .. -+...+|... .
T Consensus 144 ~~~~VLDlGcGtG~----~a~~la~~--g----~~V~gvD~S------~~ml~~A~~~~~~~~~~~~~~~~~~f~~~--D 205 (315)
T PLN02585 144 AGVTVCDAGCGTGS----LAIPLALE--G----AIVSASDIS------AAMVAEAERRAKEALAALPPEVLPKFEAN--D 205 (315)
T ss_pred CCCEEEEecCCCCH----HHHHHHHC--C----CEEEEEECC------HHHHHHHHHHHHhcccccccccceEEEEc--c
Confidence 45689999999997 44556554 3 389999842 244555455443210 00 0233444322 2
Q ss_pred ccCccccCCccCCCceEEEeeeccccccccCchHHHHHHHHHHHhcCCcEEEEE
Q 006986 434 IRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMAKSLNPIVVTLA 487 (622)
Q Consensus 434 ~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~ir~L~P~Ivtl~ 487 (622)
+++++. .=+ +|-|...|+|+.++ ....+++.++++.+..+++.
T Consensus 206 l~~l~~------~fD--~Vv~~~vL~H~p~~---~~~~ll~~l~~l~~g~liIs 248 (315)
T PLN02585 206 LESLSG------KYD--TVTCLDVLIHYPQD---KADGMIAHLASLAEKRLIIS 248 (315)
T ss_pred hhhcCC------CcC--EEEEcCEEEecCHH---HHHHHHHHHHhhcCCEEEEE
Confidence 333211 112 33355566777642 34577788888888877664
No 40
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=69.55 E-value=42 Score=34.13 Aligned_cols=111 Identities=23% Similarity=0.225 Sum_probs=58.6
Q ss_pred HHHHHHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCC
Q 006986 344 ANQAILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSL 423 (622)
Q Consensus 344 ANqAILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgv 423 (622)
-+..|++.+.-.+.-+|+|+|.|.|. +...|+.+- | ..+++||+.. ...++.+.+++ . +
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~----~~~~la~~~---~-~~~v~gvD~s------~~~i~~a~~~~----~--~- 77 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGN----STELLVERW---P-AARITGIDSS------PAMLAEARSRL----P--D- 77 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCH----HHHHHHHHC---C-CCEEEEEECC------HHHHHHHHHhC----C--C-
Confidence 35566777665566789999999993 345566553 2 2589999842 12333332221 0 2
Q ss_pred eEEEEEeecCccCccccCCccCCCceEEEeeeccccccccCchHHHHHHHHHHHhcCCcEEEEEe
Q 006986 424 NLEFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMAKSLNPIVVTLAE 488 (622)
Q Consensus 424 pFeF~~V~~~~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~ir~L~P~Ivtl~E 488 (622)
.+|. ...++++... ..=++ |-|...||++.+ ....+-+..+.|+|.-.++++
T Consensus 78 -~~~~--~~d~~~~~~~----~~fD~--v~~~~~l~~~~d----~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 78 -CQFV--EADIASWQPP----QALDL--IFANASLQWLPD----HLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred -CeEE--ECchhccCCC----CCccE--EEEccChhhCCC----HHHHHHHHHHhcCCCcEEEEE
Confidence 2332 2222222110 11123 344556777754 223344455788999776664
No 41
>KOG3648 consensus Golgi apparatus protein (cysteine-rich fibroblast growth factor receptor) [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.11 E-value=4.6 Score=46.83 Aligned_cols=11 Identities=36% Similarity=0.256 Sum_probs=4.3
Q ss_pred ccchhHHHHHH
Q 006986 368 GIQWSFLLQAL 378 (622)
Q Consensus 368 G~QWpsLiqaL 378 (622)
|.--..|++.|
T Consensus 264 G~~~~Ci~~~~ 274 (1179)
T KOG3648|consen 264 GEVVSCLEKGL 274 (1179)
T ss_pred hhHHHHHHHHH
Confidence 33333344333
No 42
>KOG3982 consensus Runt and related transcription factors [Transcription]
Probab=69.08 E-value=5.1 Score=43.69 Aligned_cols=29 Identities=31% Similarity=0.481 Sum_probs=19.7
Q ss_pred cccccchhHHHHHHhcCCCCCCceEEEeecCC
Q 006986 365 IVQGIQWSFLLQALANRPTGKPVKVRISGIPA 396 (622)
Q Consensus 365 I~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~ 396 (622)
--+-.||+..+-.|..-+ |+| +|+|.+.+
T Consensus 236 k~~~~~~~~r~~~~~~~~-~~p--m~~~~~~p 264 (475)
T KOG3982|consen 236 KPQAEQFPDRFGDLERLP-GPP--MRVTPIPP 264 (475)
T ss_pred cCCccccccccCchhhcC-CCC--cccCCCCC
Confidence 444577888877777554 455 88888864
No 43
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=66.74 E-value=48 Score=32.95 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHhh--cCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCC
Q 006986 339 FAYLTANQAILEATE--NASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPA 396 (622)
Q Consensus 339 fah~tANqAILEA~~--g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~ 396 (622)
.++-.....+++.+. ..+.-+|+|+|.+.|. +...|+.+ + .+||||+.
T Consensus 36 ~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~----~~~~la~~--~----~~v~gvD~ 85 (219)
T TIGR02021 36 EGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGL----LSIELAKR--G----AIVKAVDI 85 (219)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCH----HHHHHHHC--C----CEEEEEEC
Confidence 455666677777776 2456799999999995 55566654 2 37899974
No 44
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=64.18 E-value=6.1 Score=46.26 Aligned_cols=12 Identities=8% Similarity=0.185 Sum_probs=8.7
Q ss_pred Hhhhhhhhhhccc
Q 006986 534 ILGPRIANLLAPE 546 (622)
Q Consensus 534 ~lgreI~niVAcE 546 (622)
-|| +|.+|+-|+
T Consensus 542 K~G-~V~~v~I~~ 553 (612)
T TIGR01645 542 KFG-VVDRVIINF 553 (612)
T ss_pred cCc-eeEEEEEec
Confidence 356 788888776
No 45
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=63.25 E-value=1.8e+02 Score=30.15 Aligned_cols=49 Identities=16% Similarity=0.208 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCC
Q 006986 339 FAYLTANQAILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPA 396 (622)
Q Consensus 339 fah~tANqAILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~ 396 (622)
-+-+-+...|++.+.-...-+|+|+|.+.|.-- ..|+.+.+ .++|||+.
T Consensus 35 ~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a----~~la~~~~-----~~v~giD~ 83 (263)
T PTZ00098 35 SGGIEATTKILSDIELNENSKVLDIGSGLGGGC----KYINEKYG-----AHVHGVDI 83 (263)
T ss_pred CCchHHHHHHHHhCCCCCCCEEEEEcCCCChhh----HHHHhhcC-----CEEEEEEC
Confidence 333455677777776566778999999999832 34444322 48999974
No 46
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=62.17 E-value=1.1e+02 Score=33.18 Aligned_cols=148 Identities=17% Similarity=0.137 Sum_probs=85.2
Q ss_pred HHHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCe-E
Q 006986 347 AILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLN-L 425 (622)
Q Consensus 347 AILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvp-F 425 (622)
.|.+++. ....|||||.|.|..=..||++|..+ +++ ++-.+||.. .+.|+++.++|.. -..| +
T Consensus 69 ~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~--~~~--~~Y~plDIS------~~~L~~a~~~L~~----~~~p~l 132 (319)
T TIGR03439 69 DIAASIP--SGSMLVELGSGNLRKVGILLEALERQ--KKS--VDYYALDVS------RSELQRTLAELPL----GNFSHV 132 (319)
T ss_pred HHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhc--CCC--ceEEEEECC------HHHHHHHHHhhhh----ccCCCe
Confidence 3444443 33479999999999999999999743 333 678888742 4668888888861 1234 7
Q ss_pred EEEEeecCccC----ccccCCccCCCceEEEeeeccccccccCchHHHHHHHHHHHh--cCCcEEEEEeecC--------
Q 006986 426 EFEPILIPIRK----LRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMAKS--LNPIVVTLAEYEA-------- 491 (622)
Q Consensus 426 eF~~V~~~~e~----L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~ir~--L~P~Ivtl~E~Ea-------- 491 (622)
++++|.....+ +.... ....-.++.-.--.+.++ .+.....||+.+++ |+|.-..|+=.|.
T Consensus 133 ~v~~l~gdy~~~l~~l~~~~--~~~~~r~~~flGSsiGNf---~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~ 207 (319)
T TIGR03439 133 RCAGLLGTYDDGLAWLKRPE--NRSRPTTILWLGSSIGNF---SRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVL 207 (319)
T ss_pred EEEEEEecHHHHHhhccccc--ccCCccEEEEeCccccCC---CHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHH
Confidence 77777653322 11111 111122332222244443 24456789999987 8897544432222
Q ss_pred -CCCCC-ch-HHHHHHHHHHHHHHHhh
Q 006986 492 -NLNRT-GF-LARFKNALKYYTAVFES 515 (622)
Q Consensus 492 -~~Ns~-~F-~~RF~eAL~yYsalFDS 515 (622)
-+|.+ .. .....+.|++--..++.
T Consensus 208 ~AY~d~~gvTa~FnlN~L~~~Nr~Lg~ 234 (319)
T TIGR03439 208 RAYNDPGGVTRRFVLNGLVHANEILGS 234 (319)
T ss_pred HHhcCCcchhHHHHHHHHHHHHHHhCc
Confidence 23332 33 33446677777777664
No 47
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=60.63 E-value=1.7e+02 Score=29.06 Aligned_cols=97 Identities=15% Similarity=0.192 Sum_probs=51.6
Q ss_pred eeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCe-EEEEEeecCcc
Q 006986 357 HIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLN-LEFEPILIPIR 435 (622)
Q Consensus 357 ~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvp-FeF~~V~~~~e 435 (622)
.-.|+|+|.|.|. .+++ ++.+. | ..++|+|+.. ...++.+ .+.++..+++ ++| +....+
T Consensus 46 g~~VLDiGcGtG~--~al~--la~~~---~-~~~V~giD~s------~~~l~~A----~~~~~~~~l~~i~~--~~~d~~ 105 (187)
T PRK00107 46 GERVLDVGSGAGF--PGIP--LAIAR---P-ELKVTLVDSL------GKKIAFL----REVAAELGLKNVTV--VHGRAE 105 (187)
T ss_pred CCeEEEEcCCCCH--HHHH--HHHHC---C-CCeEEEEeCc------HHHHHHH----HHHHHHcCCCCEEE--EeccHh
Confidence 4579999999983 2222 22221 2 3589999742 2223333 3334455664 444 333444
Q ss_pred CccccCCccCCCceEEEeeeccccccccCchHHHHHHHHH-HHhcCCcEEEEEe
Q 006986 436 KLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQM-AKSLNPIVVTLAE 488 (622)
Q Consensus 436 ~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~-ir~L~P~Ivtl~E 488 (622)
++.. ..+=++|+.|+.. ..+.+++. .+.|+|.-.+++.
T Consensus 106 ~~~~----~~~fDlV~~~~~~-----------~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 106 EFGQ----EEKFDVVTSRAVA-----------SLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred hCCC----CCCccEEEEcccc-----------CHHHHHHHHHHhcCCCeEEEEE
Confidence 4432 1234566666421 23456664 5789999766654
No 48
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=60.44 E-value=6.6 Score=46.00 Aligned_cols=7 Identities=29% Similarity=0.164 Sum_probs=3.2
Q ss_pred HHHHHHH
Q 006986 468 AVENALQ 474 (622)
Q Consensus 468 ~~~~~L~ 474 (622)
.+..+|+
T Consensus 500 ~~~~~~~ 506 (612)
T TIGR01645 500 ARHLVMQ 506 (612)
T ss_pred hhHHHHH
Confidence 3444444
No 49
>PRK05785 hypothetical protein; Provisional
Probab=60.10 E-value=2e+02 Score=29.14 Aligned_cols=94 Identities=10% Similarity=0.021 Sum_probs=49.0
Q ss_pred eeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCeEEEEEeecCccC
Q 006986 357 HIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEFEPILIPIRK 436 (622)
Q Consensus 357 ~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvpFeF~~V~~~~e~ 436 (622)
.-.|+|+|.|.|.- ...|+.+- | .+|||||.. ...|+... .-. . + +....++
T Consensus 52 ~~~VLDlGcGtG~~----~~~l~~~~-~----~~v~gvD~S------~~Ml~~a~--------~~~-~--~--~~~d~~~ 103 (226)
T PRK05785 52 PKKVLDVAAGKGEL----SYHFKKVF-K----YYVVALDYA------ENMLKMNL--------VAD-D--K--VVGSFEA 103 (226)
T ss_pred CCeEEEEcCCCCHH----HHHHHHhc-C----CEEEEECCC------HHHHHHHH--------hcc-c--e--EEechhh
Confidence 45899999999944 34455443 1 489999842 23333222 111 1 1 2223333
Q ss_pred ccccCCccCCCceEEEeeeccccccccCchHHHHHHHH-HHHhcCCcEEEEEee
Q 006986 437 LRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQ-MAKSLNPIVVTLAEY 489 (622)
Q Consensus 437 L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~-~ir~L~P~Ivtl~E~ 489 (622)
+ ...++.+=+|-+.+.|||+.+ .+.+|+ +-|-|+|.++ +.|-
T Consensus 104 l-----p~~d~sfD~v~~~~~l~~~~d-----~~~~l~e~~RvLkp~~~-ile~ 146 (226)
T PRK05785 104 L-----PFRDKSFDVVMSSFALHASDN-----IEKVIAEFTRVSRKQVG-FIAM 146 (226)
T ss_pred C-----CCCCCCEEEEEecChhhccCC-----HHHHHHHHHHHhcCceE-EEEe
Confidence 3 233344445666677888654 234444 3366788543 4443
No 50
>PF02166 Androgen_recep: Androgen receptor; InterPro: IPR001103 Steroid or nuclear hormone receptors (NRs) constitute an important super-family of transcription regulators that are involved in diverse physiological functions, including control of embryonic development, cell differentiation and homeostasis. Members include the steroid hormone receptors and receptors for thyroid hormone, retinoids and 1,25-dihydroxy-vitamin D3. The proteins function as dimeric molecules in the nucleus to regulate the transcription of target genes in a ligand-responsive manner [, ]. NRs are extremely important in medical research, a large number of them being implicated in diseases such as cancer, diabetes and hormone resistance syndromes. Many do not yet have a defined ligand and are accordingly termed "orphan" receptors. More than 300 NRs have been described to date and a new system has recently been introduced in an attempt to rationalise the increasingly complex set of names used to describe superfamily members. The androgen receptor (AR) consists of 3 functional and structural domains: an N-terminal (modulatory) domain; a DNA binding domain (IPR001628 from INTERPRO) that mediates specific binding to target DNA sequences (ligand-responsive elements); and a hormone binding domain. The N-terminal domain (NTD) is unique to the androgen receptors and spans approximately the first 530 residues; the highly-conserved DNA-binding domain is smaller (around 65 residues) and occupies the central portion of the protein; and the hormone ligand binding domain (LBD) lies at the receptor C terminus. In the absence of ligand, steroid hormone receptors are thought to be weakly associated with nuclear components; hormone binding greatly increases receptor affinity. The LBDs of steroid hormone receptors fold into 12 helices that form a ligand-binding pocket. When an agonist is bound, helix 12 folds over the pocket to enclose the ligand []. When an antagonist is unbound, helix 12 is positioned away from the pocket in a way that interferes with the binding of coactivators to a groove in the hormone-binding domain formed after ligand binding. In AR, ligand binding that induces folding of helix 12 to overlie the pocket discloses a groove that binds a region of the NTD. Coactivator molecules can also bind to this groove, but the predominant site for coactivator binding to AR is in the NTD. AR ligand resides in a pocket and primarily contacts helices 4, 5, and 10. The DNA-binding region includes eight cysteine residues that form two coordination complexes, each composed of four cysteines and a Zn2+ ion. These two zinc fingers form the structure that binds to the major groove of DNA. The second zinc finger stabilises the binding complex by hydrophobic interactions with the first finger and contributes to specificity of receptor DNA binding. It is also necessary for receptor dimerisation that occurs during DNA binding Defects in the androgen receptor cause testicular feminisation syndrome, androgen insensibility syndrome (AIS) [, ]. AIS may be complete (CAIS), where external genitalia are phenotypically female; partial (PAIS), where genitalia are substantively ambiguous; or mild (MAIS), where external genitalia are normal male, or nearly so. Defects in the receptor also cause X-linked spinal and bulbar muscular atrophy (also known as Kennedy's disease).; GO: 0003677 DNA binding, 0004882 androgen receptor activity, 0005496 steroid binding, 0006355 regulation of transcription, DNA-dependent, 0030521 androgen receptor signaling pathway, 0005634 nucleus; PDB: 1XOW_B 2Q7K_B 2Q7I_B.
Probab=60.06 E-value=2.9 Score=45.05 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=0.0
Q ss_pred CCHHHHHHHH
Q 006986 523 DSDERFQVER 532 (622)
Q Consensus 523 ~s~eR~~vE~ 532 (622)
....|+++|.
T Consensus 356 hph~RIKlEn 365 (423)
T PF02166_consen 356 HPHARIKLEN 365 (423)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 3556666665
No 51
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=59.14 E-value=17 Score=37.87 Aligned_cols=101 Identities=23% Similarity=0.335 Sum_probs=65.1
Q ss_pred CCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCeEEEEEeecCc
Q 006986 355 ASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEFEPILIPI 434 (622)
Q Consensus 355 ~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvpFeF~~V~~~~ 434 (622)
-...-|+|+|.|-| .|-+.||+. | .++||||.. + ..++. . ...|.+-|+..+|.... +
T Consensus 58 l~g~~vLDvGCGgG----~Lse~mAr~--G----a~VtgiD~s---e---~~I~~-A---k~ha~e~gv~i~y~~~~--~ 115 (243)
T COG2227 58 LPGLRVLDVGCGGG----ILSEPLARL--G----ASVTGIDAS---E---KPIEV-A---KLHALESGVNIDYRQAT--V 115 (243)
T ss_pred CCCCeEEEecCCcc----HhhHHHHHC--C----CeeEEecCC---h---HHHHH-H---HHhhhhccccccchhhh--H
Confidence 35678999999999 788888864 3 689999842 1 11221 1 12345667887777653 4
Q ss_pred cCccccCCccCCCceEEEeeeccccccccCchHHHHHHHH-HHHhcCCcEEEEE
Q 006986 435 RKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQ-MAKSLNPIVVTLA 487 (622)
Q Consensus 435 e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~-~ir~L~P~Ivtl~ 487 (622)
|+|.... +-.=||-||=-|+|+.+ + +.|++ ..+-++|.-+++.
T Consensus 116 edl~~~~-----~~FDvV~cmEVlEHv~d----p-~~~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 116 EDLASAG-----GQFDVVTCMEVLEHVPD----P-ESFLRACAKLVKPGGILFL 159 (243)
T ss_pred HHHHhcC-----CCccEEEEhhHHHccCC----H-HHHHHHHHHHcCCCcEEEE
Confidence 5554321 33447889999999876 2 34555 5577799865553
No 52
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=57.26 E-value=77 Score=31.91 Aligned_cols=111 Identities=17% Similarity=0.181 Sum_probs=65.2
Q ss_pred HHHHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCeE
Q 006986 346 QAILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNL 425 (622)
Q Consensus 346 qAILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvpF 425 (622)
..|++|+.--+.-.++|+|.|.|.== --||.+ | +.+|++|.. ... -++|.+.|+.-++++
T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~GRNa----lyLA~~--G----~~VtAvD~s------~~a----l~~l~~~a~~~~l~i 79 (192)
T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEGRNA----LYLASQ--G----FDVTAVDIS------PVA----LEKLQRLAEEEGLDI 79 (192)
T ss_dssp HHHHHHCTTS-SSEEEEES-TTSHHH----HHHHHT--T-----EEEEEESS------HHH----HHHHHHHHHHTT-TE
T ss_pred HHHHHHHhhcCCCcEEEcCCCCcHHH----HHHHHC--C----CeEEEEECC------HHH----HHHHHHHHhhcCcee
Confidence 45778877667778999999999521 235554 3 789999742 122 245788888889886
Q ss_pred EEEEeecCccCccccCCccCCCceEEEeeeccccccccCchHHHHHHHHHH-HhcCCcEEEEE
Q 006986 426 EFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMA-KSLNPIVVTLA 487 (622)
Q Consensus 426 eF~~V~~~~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~i-r~L~P~Ivtl~ 487 (622)
+.... +|....+ +++.=+|.+...+++|.. ..++.+++.+ ..++|.-+.+.
T Consensus 80 ~~~~~-----Dl~~~~~---~~~yD~I~st~v~~fL~~---~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 80 RTRVA-----DLNDFDF---PEEYDFIVSTVVFMFLQR---ELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp EEEE------BGCCBS----TTTEEEEEEESSGGGS-G---GGHHHHHHHHHHTEEEEEEEEE
T ss_pred EEEEe-----cchhccc---cCCcCEEEEEEEeccCCH---HHHHHHHHHHHhhcCCcEEEEE
Confidence 55432 2322222 234445666666777764 3457777766 45799855444
No 53
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=57.05 E-value=97 Score=34.38 Aligned_cols=119 Identities=12% Similarity=0.089 Sum_probs=61.4
Q ss_pred HHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCeEEE
Q 006986 348 ILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEF 427 (622)
Q Consensus 348 ILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvpFeF 427 (622)
+|+.+.....=+|+|+|.|.|. +--.|+.+. | ..+||+||.. ...++.+.+++......-...++|
T Consensus 220 lL~~lp~~~~~~VLDLGCGtGv----i~i~la~~~---P-~~~V~~vD~S------~~Av~~A~~N~~~n~~~~~~~v~~ 285 (378)
T PRK15001 220 FMQHLPENLEGEIVDLGCGNGV----IGLTLLDKN---P-QAKVVFVDES------PMAVASSRLNVETNMPEALDRCEF 285 (378)
T ss_pred HHHhCCcccCCeEEEEeccccH----HHHHHHHhC---C-CCEEEEEECC------HHHHHHHHHHHHHcCcccCceEEE
Confidence 4455433222279999999997 444555552 3 4799999842 244555555553321110113343
Q ss_pred EEeecC-ccCccccCCccCCCceEEEeeeccccccccCchHHHHHHHH-HHHhcCCcEEEEEee
Q 006986 428 EPILIP-IRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQ-MAKSLNPIVVTLAEY 489 (622)
Q Consensus 428 ~~V~~~-~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~-~ir~L~P~Ivtl~E~ 489 (622)
. ... ++.+.. ..=+.|+.|-.|...+-..+ .....+++ .-+.|+|.-.+.++.
T Consensus 286 ~--~~D~l~~~~~-----~~fDlIlsNPPfh~~~~~~~--~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 286 M--INNALSGVEP-----FRFNAVLCNPPFHQQHALTD--NVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred E--EccccccCCC-----CCEEEEEECcCcccCccCCH--HHHHHHHHHHHHhcccCCEEEEEE
Confidence 3 221 111211 12257888877754432221 22344444 557889997665554
No 54
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=56.78 E-value=2.1e+02 Score=28.42 Aligned_cols=22 Identities=5% Similarity=0.081 Sum_probs=17.5
Q ss_pred ccchhhHHHHHHhCCCcccCCC
Q 006986 555 VEDIENWRIFMENSDFEGIPFS 576 (622)
Q Consensus 555 ~E~~~~Wr~rm~~AGF~~v~ls 576 (622)
.-+.+.|...++.+||+.+.+.
T Consensus 183 ~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 183 FIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred cCCHHHHHHHHHHCCCeEeeee
Confidence 3456789999999999988654
No 55
>PRK06922 hypothetical protein; Provisional
Probab=55.77 E-value=84 Score=37.46 Aligned_cols=110 Identities=19% Similarity=0.215 Sum_probs=58.7
Q ss_pred eeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCeEEEEEeecCccC
Q 006986 357 HIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEFEPILIPIRK 436 (622)
Q Consensus 357 ~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvpFeF~~V~~~~e~ 436 (622)
.-.|+|+|.|.|. ++..|+.+- | ..++||||.+ ...++.+..++. ..+.++++ +.....+
T Consensus 419 g~rVLDIGCGTG~----ls~~LA~~~---P-~~kVtGIDIS------~~MLe~Ararl~----~~g~~ie~--I~gDa~d 478 (677)
T PRK06922 419 GDTIVDVGAGGGV----MLDMIEEET---E-DKRIYGIDIS------ENVIDTLKKKKQ----NEGRSWNV--IKGDAIN 478 (677)
T ss_pred CCEEEEeCCCCCH----HHHHHHHhC---C-CCEEEEEECC------HHHHHHHHHHhh----hcCCCeEE--EEcchHh
Confidence 4589999999984 445666552 3 3799999853 233444443332 23444443 3222222
Q ss_pred ccccCCccCCCceEEEeeeccccccccC--------chHHHHHHHH-HHHhcCCcE-EEEEee
Q 006986 437 LRASSFRVDPNEALVVNFMLQLNSLLDD--------NRLAVENALQ-MAKSLNPIV-VTLAEY 489 (622)
Q Consensus 437 L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~--------~~~~~~~~L~-~ir~L~P~I-vtl~E~ 489 (622)
+. .. ..++.+=+|-+.+-||++.+- .......+|+ ..|.|+|.- ++++|.
T Consensus 479 Lp-~~--fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 479 LS-SS--FEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred Cc-cc--cCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 21 00 224444455566677877531 1123455665 458899984 455553
No 56
>PF02166 Androgen_recep: Androgen receptor; InterPro: IPR001103 Steroid or nuclear hormone receptors (NRs) constitute an important super-family of transcription regulators that are involved in diverse physiological functions, including control of embryonic development, cell differentiation and homeostasis. Members include the steroid hormone receptors and receptors for thyroid hormone, retinoids and 1,25-dihydroxy-vitamin D3. The proteins function as dimeric molecules in the nucleus to regulate the transcription of target genes in a ligand-responsive manner [, ]. NRs are extremely important in medical research, a large number of them being implicated in diseases such as cancer, diabetes and hormone resistance syndromes. Many do not yet have a defined ligand and are accordingly termed "orphan" receptors. More than 300 NRs have been described to date and a new system has recently been introduced in an attempt to rationalise the increasingly complex set of names used to describe superfamily members. The androgen receptor (AR) consists of 3 functional and structural domains: an N-terminal (modulatory) domain; a DNA binding domain (IPR001628 from INTERPRO) that mediates specific binding to target DNA sequences (ligand-responsive elements); and a hormone binding domain. The N-terminal domain (NTD) is unique to the androgen receptors and spans approximately the first 530 residues; the highly-conserved DNA-binding domain is smaller (around 65 residues) and occupies the central portion of the protein; and the hormone ligand binding domain (LBD) lies at the receptor C terminus. In the absence of ligand, steroid hormone receptors are thought to be weakly associated with nuclear components; hormone binding greatly increases receptor affinity. The LBDs of steroid hormone receptors fold into 12 helices that form a ligand-binding pocket. When an agonist is bound, helix 12 folds over the pocket to enclose the ligand []. When an antagonist is unbound, helix 12 is positioned away from the pocket in a way that interferes with the binding of coactivators to a groove in the hormone-binding domain formed after ligand binding. In AR, ligand binding that induces folding of helix 12 to overlie the pocket discloses a groove that binds a region of the NTD. Coactivator molecules can also bind to this groove, but the predominant site for coactivator binding to AR is in the NTD. AR ligand resides in a pocket and primarily contacts helices 4, 5, and 10. The DNA-binding region includes eight cysteine residues that form two coordination complexes, each composed of four cysteines and a Zn2+ ion. These two zinc fingers form the structure that binds to the major groove of DNA. The second zinc finger stabilises the binding complex by hydrophobic interactions with the first finger and contributes to specificity of receptor DNA binding. It is also necessary for receptor dimerisation that occurs during DNA binding Defects in the androgen receptor cause testicular feminisation syndrome, androgen insensibility syndrome (AIS) [, ]. AIS may be complete (CAIS), where external genitalia are phenotypically female; partial (PAIS), where genitalia are substantively ambiguous; or mild (MAIS), where external genitalia are normal male, or nearly so. Defects in the receptor also cause X-linked spinal and bulbar muscular atrophy (also known as Kennedy's disease).; GO: 0003677 DNA binding, 0004882 androgen receptor activity, 0005496 steroid binding, 0006355 regulation of transcription, DNA-dependent, 0030521 androgen receptor signaling pathway, 0005634 nucleus; PDB: 1XOW_B 2Q7K_B 2Q7I_B.
Probab=55.37 E-value=3.9 Score=44.12 Aligned_cols=6 Identities=50% Similarity=1.115 Sum_probs=0.0
Q ss_pred CCCCCC
Q 006986 167 SCPSQL 172 (622)
Q Consensus 167 ~~~~~~ 172 (622)
+|..+|
T Consensus 150 sCS~dl 155 (423)
T PF02166_consen 150 SCSADL 155 (423)
T ss_dssp ------
T ss_pred cccccc
Confidence 454444
No 57
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=55.36 E-value=2e+02 Score=31.29 Aligned_cols=115 Identities=18% Similarity=0.183 Sum_probs=62.2
Q ss_pred HHHHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCeE
Q 006986 346 QAILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNL 425 (622)
Q Consensus 346 qAILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvpF 425 (622)
..+++.+.....=+|+|+|.|.|. |-..|+.+. | ..++|+|+.. ...++.+.+++.+ .++..
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~----ls~~la~~~---p-~~~v~~vDis------~~Al~~A~~nl~~----n~l~~ 247 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGV----LSAVLARHS---P-KIRLTLSDVS------AAALESSRATLAA----NGLEG 247 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCH----HHHHHHHhC---C-CCEEEEEECC------HHHHHHHHHHHHH----cCCCC
Confidence 444554443223379999999997 444555552 2 4689999742 3446555555543 34554
Q ss_pred EEEEeecCccCccccCCccCCCceEEEeeeccccccccCchHHHHHHHHH-HHhcCCcEEEEE
Q 006986 426 EFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQM-AKSLNPIVVTLA 487 (622)
Q Consensus 426 eF~~V~~~~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~-ir~L~P~Ivtl~ 487 (622)
++.. ... +. .+ -..=+.|+.|-.| |...+........+++. .+.|+|.-..+.
T Consensus 248 ~~~~--~D~--~~--~~-~~~fDlIvsNPPF--H~g~~~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 248 EVFA--SNV--FS--DI-KGRFDMIISNPPF--HDGIQTSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred EEEE--ccc--cc--cc-CCCccEEEECCCc--cCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 4432 111 11 11 1223678888765 44333333344566654 577899864433
No 58
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=53.55 E-value=70 Score=33.72 Aligned_cols=113 Identities=17% Similarity=0.149 Sum_probs=59.0
Q ss_pred HHHHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCeE
Q 006986 346 QAILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNL 425 (622)
Q Consensus 346 qAILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvpF 425 (622)
..|+|.+.=+..=||+|+|.| |=.++..+|+|- | +++|||... ..-. +...+.++..|+.=
T Consensus 52 ~~~~~~~~l~~G~~vLDiGcG----wG~~~~~~a~~~-g----~~v~gitlS------~~Q~----~~a~~~~~~~gl~~ 112 (273)
T PF02353_consen 52 DLLCEKLGLKPGDRVLDIGCG----WGGLAIYAAERY-G----CHVTGITLS------EEQA----EYARERIREAGLED 112 (273)
T ss_dssp HHHHTTTT--TT-EEEEES-T----TSHHHHHHHHHH-------EEEEEES-------HHHH----HHHHHHHHCSTSSS
T ss_pred HHHHHHhCCCCCCEEEEeCCC----ccHHHHHHHHHc-C----cEEEEEECC------HHHH----HHHHHHHHhcCCCC
Confidence 344555544455589999875 778899999886 3 689999631 1222 23444556677753
Q ss_pred EEEEeecCccCccccCCccCCCceEEEeeeccccccccCchHHHHHHHHHH-HhcCCcEEEEEe
Q 006986 426 EFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMA-KSLNPIVVTLAE 488 (622)
Q Consensus 426 eF~~V~~~~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~i-r~L~P~Ivtl~E 488 (622)
....+.....++.. .-|-++.| -.+-|+.. .....+++.| +-|+|.-.+++.
T Consensus 113 ~v~v~~~D~~~~~~-----~fD~IvSi---~~~Ehvg~---~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 113 RVEVRLQDYRDLPG-----KFDRIVSI---EMFEHVGR---KNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp TEEEEES-GGG--------S-SEEEEE---SEGGGTCG---GGHHHHHHHHHHHSETTEEEEEE
T ss_pred ceEEEEeeccccCC-----CCCEEEEE---echhhcCh---hHHHHHHHHHHHhcCCCcEEEEE
Confidence 22223333333332 12222333 33556642 3456777776 678999766653
No 59
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=52.89 E-value=1.2e+02 Score=30.40 Aligned_cols=105 Identities=13% Similarity=0.067 Sum_probs=57.6
Q ss_pred eEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCe-EEEEEeecCccC
Q 006986 358 IHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLN-LEFEPILIPIRK 436 (622)
Q Consensus 358 VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvp-FeF~~V~~~~e~ 436 (622)
..|+|++.|.|. --|.+|+.. . -+||+|+.. ...++.+.+. ++.+|+. .+| +...+.+
T Consensus 55 ~~vLDl~~GsG~---l~l~~lsr~---a---~~V~~vE~~------~~a~~~a~~N----l~~~~~~~v~~--~~~D~~~ 113 (199)
T PRK10909 55 ARCLDCFAGSGA---LGLEALSRY---A---AGATLLEMD------RAVAQQLIKN----LATLKAGNARV--VNTNALS 113 (199)
T ss_pred CEEEEcCCCccH---HHHHHHHcC---C---CEEEEEECC------HHHHHHHHHH----HHHhCCCcEEE--EEchHHH
Confidence 479999999882 334566642 1 378999731 1223333333 3334442 332 2222221
Q ss_pred -ccccCCccCCCceEEEeeeccccccccCchHHHHHHHHHHHh---cCCcEEEEEeecCCCC
Q 006986 437 -LRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMAKS---LNPIVVTLAEYEANLN 494 (622)
Q Consensus 437 -L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~ir~---L~P~Ivtl~E~Ea~~N 494 (622)
+.. . ..+=+.|++|=.++- .....+++.|.. |+|+-++++|.....+
T Consensus 114 ~l~~--~-~~~fDlV~~DPPy~~--------g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~~ 164 (199)
T PRK10909 114 FLAQ--P-GTPHNVVFVDPPFRK--------GLLEETINLLEDNGWLADEALIYVESEVENG 164 (199)
T ss_pred HHhh--c-CCCceEEEECCCCCC--------ChHHHHHHHHHHCCCcCCCcEEEEEecCCCC
Confidence 110 1 112367888877631 234567777766 6999999999877543
No 60
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=52.37 E-value=2.4e+02 Score=27.60 Aligned_cols=44 Identities=18% Similarity=0.244 Sum_probs=26.9
Q ss_pred HHHHHHHhhc---CCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCC
Q 006986 345 NQAILEATEN---ASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPA 396 (622)
Q Consensus 345 NqAILEA~~g---~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~ 396 (622)
...|++.+.. .+..+|+|+|.|.|.-. ..|+.+ + | ..++|+|+.
T Consensus 20 ~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~----~~l~~~--~-~-~~~~~~~D~ 66 (240)
T TIGR02072 20 AKRLLALLKEKGIFIPASVLDIGCGTGYLT----RALLKR--F-P-QAEFIALDI 66 (240)
T ss_pred HHHHHHHhhhhccCCCCeEEEECCCccHHH----HHHHHh--C-C-CCcEEEEeC
Confidence 3344554443 33478999999999633 334433 2 2 467999974
No 61
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=51.67 E-value=1.4e+02 Score=32.21 Aligned_cols=113 Identities=18% Similarity=0.100 Sum_probs=55.4
Q ss_pred HHHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCeEE
Q 006986 347 AILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLE 426 (622)
Q Consensus 347 AILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvpFe 426 (622)
+|++.+...+.-+|+|+|.|.|. ++..++.+ | + -+++||++. ...+.. -+...+++... -...
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~----~~~~~~~~--g-~--~~v~GiDpS------~~ml~q-~~~~~~~~~~~-~~v~ 174 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGY----HMWRMLGH--G-A--KSLVGIDPT------VLFLCQ-FEAVRKLLDND-KRAI 174 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcH----HHHHHHHc--C-C--CEEEEEcCC------HHHHHH-HHHHHHHhccC-CCeE
Confidence 45555543444589999999996 33444433 3 2 278999842 112221 12222232211 1222
Q ss_pred EEEeecCccCccccCCccCCCceEEEeeeccccccccCchHHHHHHHHHHHhcCCcEEEEEe
Q 006986 427 FEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMAKSLNPIVVTLAE 488 (622)
Q Consensus 427 F~~V~~~~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~ir~L~P~Ivtl~E 488 (622)
+. ...++++... +.+=+|-|+..|||+.+ +.+.+-..-+.|+|.-.++.|
T Consensus 175 ~~--~~~ie~lp~~------~~FD~V~s~gvL~H~~d----p~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 175 LE--PLGIEQLHEL------YAFDTVFSMGVLYHRKS----PLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred EE--ECCHHHCCCC------CCcCEEEEcchhhccCC----HHHHHHHHHHhcCCCCEEEEE
Confidence 22 2234444321 11223445566788643 334444455779999655443
No 62
>PF15336 Auts2: Autism susceptibility gene 2 protein
Probab=50.64 E-value=1.1e+02 Score=31.28 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=14.2
Q ss_pred ccccceeeccCCCCcCCCCCCCC
Q 006986 177 SELNRVVFADSQKTILPAWPPSP 199 (622)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~ 199 (622)
.--||+-=+..+.++||+|+.++
T Consensus 146 dpWnRLhRtPpsFPtpP~Wpkp~ 168 (212)
T PF15336_consen 146 DPWNRLHRTPPSFPTPPPWPKPG 168 (212)
T ss_pred ccccccCCCCCCCCCCCCCCCCc
Confidence 33466665556677888885544
No 63
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=47.41 E-value=6.2 Score=47.44 Aligned_cols=10 Identities=30% Similarity=0.348 Sum_probs=0.0
Q ss_pred HHHHHHHHhh
Q 006986 344 ANQAILEATE 353 (622)
Q Consensus 344 ANqAILEA~~ 353 (622)
..+-+|||+.
T Consensus 614 ~~~pll~~v~ 623 (799)
T PF09606_consen 614 MCQPLLDAVM 623 (799)
T ss_dssp ----------
T ss_pred CCchHHHHHH
Confidence 3445666653
No 64
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=47.34 E-value=3.9e+02 Score=28.71 Aligned_cols=113 Identities=19% Similarity=0.182 Sum_probs=55.1
Q ss_pred HHHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCeEE
Q 006986 347 AILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLE 426 (622)
Q Consensus 347 AILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvpFe 426 (622)
.|++.+..-+.-+|+|+|.|.|.. +..++.+ | +. +++||+.. ...+. ..+.+.+++.. +.+.+
T Consensus 113 ~l~~~l~~l~g~~VLDIGCG~G~~----~~~la~~--g-~~--~V~GiD~S------~~~l~-q~~a~~~~~~~-~~~i~ 175 (322)
T PRK15068 113 RVLPHLSPLKGRTVLDVGCGNGYH----MWRMLGA--G-AK--LVVGIDPS------QLFLC-QFEAVRKLLGN-DQRAH 175 (322)
T ss_pred HHHHhhCCCCCCEEEEeccCCcHH----HHHHHHc--C-CC--EEEEEcCC------HHHHH-HHHHHHHhcCC-CCCeE
Confidence 344555433334899999999953 2344544 3 22 58999842 11111 11122223221 22334
Q ss_pred EEEeecCccCccccCCccCCCceEEEeeeccccccccCchHHHHHHHHHHHhcCCcEEEEEe
Q 006986 427 FEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMAKSLNPIVVTLAE 488 (622)
Q Consensus 427 F~~V~~~~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~ir~L~P~Ivtl~E 488 (622)
|.. ..++++.. ++-+=+|-|+..|||+.+ ....+-+..+.|+|.-.++.|
T Consensus 176 ~~~--~d~e~lp~------~~~FD~V~s~~vl~H~~d----p~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 176 LLP--LGIEQLPA------LKAFDTVFSMGVLYHRRS----PLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred EEe--CCHHHCCC------cCCcCEEEECChhhccCC----HHHHHHHHHHhcCCCcEEEEE
Confidence 432 23444421 111223345556788643 334444566888999665554
No 65
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=47.12 E-value=1.3e+02 Score=33.33 Aligned_cols=43 Identities=19% Similarity=0.199 Sum_probs=27.1
Q ss_pred HHHHHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCC
Q 006986 345 NQAILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPA 396 (622)
Q Consensus 345 NqAILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~ 396 (622)
-..|++.+.-...-+|+|+|.|.|. +...|+.+.+ .++|||+.
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~----~a~~la~~~g-----~~V~giDl 198 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGG----LARYAAEHYG-----VSVVGVTI 198 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccH----HHHHHHHHCC-----CEEEEEeC
Confidence 3445555543444589999998775 4455565432 47999974
No 66
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=46.54 E-value=7.7 Score=40.48 Aligned_cols=110 Identities=22% Similarity=0.250 Sum_probs=58.4
Q ss_pred CeeEEeecccccccchhHHHHHHhcCC--CCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCeEEEEEe---
Q 006986 356 SHIHIVDFGIVQGIQWSFLLQALANRP--TGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEFEPI--- 430 (622)
Q Consensus 356 ~~VHIVDfgI~~G~QWpsLiqaLA~R~--~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvpFeF~~V--- 430 (622)
+.|||||+.= .|+.|-.|+.--. ...|..+=..|- -....+-+.+||+.+|..+-.+--
T Consensus 36 ngihIIDL~k----T~~~l~~A~~~v~~~~~~~g~ILfVgT------------K~~a~~~V~~~A~r~g~~yV~~RwLgG 99 (252)
T COG0052 36 NGIHIIDLQK----TLERLREAYKFLRRIAANGGKILFVGT------------KKQAQEPVKEFAERTGAYYVNGRWLGG 99 (252)
T ss_pred CCcEEEEHHH----HHHHHHHHHHHHHHHHcCCCEEEEEec------------hHHHHHHHHHHHHHhCCceecCcccCc
Confidence 7899999984 3555554443211 111223444432 134567789999999998754332
Q ss_pred -ecCccCcccc-------------CCc-cCCCceEEEeeeccccccccCchHHHHHHHHHHHhcC--CcEEEEEeecC
Q 006986 431 -LIPIRKLRAS-------------SFR-VDPNEALVVNFMLQLNSLLDDNRLAVENALQMAKSLN--PIVVTLAEYEA 491 (622)
Q Consensus 431 -~~~~e~L~~~-------------~l~-~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~ir~L~--P~Ivtl~E~Ea 491 (622)
++++..++.+ .+. +.+.|+| ++......++.+|.-||+|+ |+++++++...
T Consensus 100 ~LTN~~ti~~si~rl~~lE~~~~~~~~~~tKkE~l----------~l~re~~kL~k~lgGIk~m~~~Pd~l~ViDp~~ 167 (252)
T COG0052 100 MLTNFKTIRKSIKRLKELEKMEEDGFDGLTKKEAL----------MLTRELEKLEKSLGGIKDMKGLPDVLFVIDPRK 167 (252)
T ss_pred cccCchhHHHHHHHHHHHHHHhhcccccccHHHHH----------HHHHHHHHHHHhhcchhhccCCCCEEEEeCCcH
Confidence 2222222111 110 1122332 11222345677777888885 89988887543
No 67
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=45.94 E-value=3.2e+02 Score=28.45 Aligned_cols=122 Identities=19% Similarity=0.223 Sum_probs=67.5
Q ss_pred hhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCeEEEE-Ee
Q 006986 352 TENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEFE-PI 430 (622)
Q Consensus 352 ~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvpFeF~-~V 430 (622)
+-...++-++..|+|.|.-.+-+ + -.| -.|||.|++ .+.+++... ..+|+. .|.+|. -|
T Consensus 72 ~gk~~K~~vLEvgcGtG~Nfkfy-------~-~~p-~~svt~lDp-------n~~mee~~~--ks~~E~--k~~~~~~fv 131 (252)
T KOG4300|consen 72 LGKSGKGDVLEVGCGTGANFKFY-------P-WKP-INSVTCLDP-------NEKMEEIAD--KSAAEK--KPLQVERFV 131 (252)
T ss_pred hcccCccceEEecccCCCCcccc-------c-CCC-CceEEEeCC-------cHHHHHHHH--HHHhhc--cCcceEEEE
Confidence 33456899999999888433211 1 124 489999974 234554433 233444 455554 34
Q ss_pred ecCccCccccCCccCCCceEEEeeeccccccccCchHHHHHHHHHHHh-cCCcE-EEEEeecCCCCCCchHHHHHH
Q 006986 431 LIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMAKS-LNPIV-VTLAEYEANLNRTGFLARFKN 504 (622)
Q Consensus 431 ~~~~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~ir~-L~P~I-vtl~E~Ea~~Ns~~F~~RF~e 504 (622)
+...|+|. .+..+-.=+|-|.|-|=.. ......|+.+|+ |+|.- +++.|+-+. .-+|..|+..
T Consensus 132 va~ge~l~----~l~d~s~DtVV~TlvLCSv-----e~~~k~L~e~~rlLRpgG~iifiEHva~--~y~~~n~i~q 196 (252)
T KOG4300|consen 132 VADGENLP----QLADGSYDTVVCTLVLCSV-----EDPVKQLNEVRRLLRPGGRIIFIEHVAG--EYGFWNRILQ 196 (252)
T ss_pred eechhcCc----ccccCCeeeEEEEEEEecc-----CCHHHHHHHHHHhcCCCcEEEEEecccc--cchHHHHHHH
Confidence 44555553 1234444455566655322 122466666654 68984 566787764 3367777654
No 68
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=45.61 E-value=2.7e+02 Score=26.42 Aligned_cols=36 Identities=22% Similarity=0.393 Sum_probs=22.2
Q ss_pred EEeeeccccccccCchHHHHHHHH-HHHhcCCcE-EEEEeecC
Q 006986 451 VVNFMLQLNSLLDDNRLAVENALQ-MAKSLNPIV-VTLAEYEA 491 (622)
Q Consensus 451 aVN~~~~Lh~Ll~~~~~~~~~~L~-~ir~L~P~I-vtl~E~Ea 491 (622)
+|-+.+.||++.+ +..+|+ ..|-|+|.- +++.|-..
T Consensus 47 ~v~~~~~l~~~~d-----~~~~l~ei~rvLkpGG~l~i~d~~~ 84 (160)
T PLN02232 47 AVTMGYGLRNVVD-----RLRAMKEMYRVLKPGSRVSILDFNK 84 (160)
T ss_pred EEEecchhhcCCC-----HHHHHHHHHHHcCcCeEEEEEECCC
Confidence 4446678888753 245555 557889984 45555543
No 69
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=45.05 E-value=1.5e+02 Score=33.31 Aligned_cols=158 Identities=15% Similarity=0.161 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHHhhcCCeeEEeecccccc-cchhHHHHHHhcC-------CCCCCceEEEeecCCCCCCCChHHHHHHH
Q 006986 339 FAYLTANQAILEATENASHIHIVDFGIVQG-IQWSFLLQALANR-------PTGKPVKVRISGIPAPALGKSPAASLLAT 410 (622)
Q Consensus 339 fah~tANqAILEA~~g~~~VHIVDfgI~~G-~QWpsLiqaLA~R-------~~GpP~~LRITgI~~P~~g~~~~~~L~~t 410 (622)
|+-+.||. ++....+|-|||.|+|+- +-=|..| +|+.= ....|.....-|.-.|. ..+ ...-+-
T Consensus 89 Lt~~LaN~----~l~rG~~v~iiDaDvGQ~ei~pPg~I-SL~~~~s~~~~L~~l~~~~~~FvG~isP~--~~~-~~~i~~ 160 (398)
T COG1341 89 LTTYLANK----LLARGRKVAIIDADVGQSEIGPPGFI-SLAFPESPVISLSELEPFTLYFVGSISPQ--GFP-GRYIAG 160 (398)
T ss_pred HHHHHHHH----HhhcCceEEEEeCCCCCcccCCCceE-EeecccCCCCCHHHcCccceEEEeccCCC--CCh-HHHHHH
Confidence 44556674 445456799999999863 2111111 11100 00112234444443342 112 223333
Q ss_pred HHHHHHHhhhcCCeEEEEEeecCccCccccCCccCCCceEEEeeeccccccccCchHHHHHHHHHHHhcCCcEEEEEeec
Q 006986 411 GDRLREFAGSLSLNLEFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMAKSLNPIVVTLAEYE 490 (622)
Q Consensus 411 G~rL~~fA~~lgvpFeF~~V~~~~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~ir~L~P~Ivtl~E~E 490 (622)
-.||.++|+.. -+.++||+.-..+= -..++..+.+|+..+|++|+..|.+
T Consensus 161 v~rL~~~a~~~-------------------------~~~ilIdT~GWi~G-----~~g~elk~~li~~ikP~~Ii~l~~~ 210 (398)
T COG1341 161 VARLVDLAKKE-------------------------ADFILIDTDGWIKG-----WGGLELKRALIDAIKPDLIIALERA 210 (398)
T ss_pred HHHHHHHhhcc-------------------------CCEEEEcCCCceeC-----chHHHHHHHHHhhcCCCEEEEeccc
Confidence 45666666632 24667887776541 1356777889999999999998765
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhhhhhh
Q 006986 491 ANLNRTGFLARFKNALKYYTAVFESLEPNMTTDSDERFQVERQILGPRIAN 541 (622)
Q Consensus 491 a~~Ns~~F~~RF~eAL~yYsalFDSLea~l~~~s~eR~~vE~~~lgreI~n 541 (622)
-. .+++.+=.+...| ....++..++.-.||...=..-+++.+.+
T Consensus 211 ~~---~~~l~~~~~~~~~----~~~~~~~~~~sR~ER~~~R~e~~~ryf~~ 254 (398)
T COG1341 211 NE---LSPLLEGVESIVY----LKVPDAVAPRSREERKELREEKYRRYFEG 254 (398)
T ss_pred cc---cchhhhcccCceE----EeccccccccChhHHHHHHHHHHHHhccC
Confidence 43 2323333333333 33334444555566654333334555554
No 70
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=44.57 E-value=1.8e+02 Score=28.41 Aligned_cols=98 Identities=21% Similarity=0.242 Sum_probs=49.7
Q ss_pred eeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCeEEEEEeecCccC
Q 006986 357 HIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEFEPILIPIRK 436 (622)
Q Consensus 357 ~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvpFeF~~V~~~~e~ 436 (622)
.-+|+|+|.|.|. .++.=+.. . | ..++|||+.. ...++. +.+.++..|++ .+..+...+++
T Consensus 43 ~~~vLDiGcGtG~--~s~~la~~-~----~-~~~V~~iD~s------~~~~~~----a~~~~~~~~~~-~i~~i~~d~~~ 103 (181)
T TIGR00138 43 GKKVIDIGSGAGF--PGIPLAIA-R----P-ELKLTLLESN------HKKVAF----LREVKAELGLN-NVEIVNGRAED 103 (181)
T ss_pred CCeEEEecCCCCc--cHHHHHHH-C----C-CCeEEEEeCc------HHHHHH----HHHHHHHhCCC-CeEEEecchhh
Confidence 4589999999993 22221221 1 2 3579999742 122322 23344455663 13334444444
Q ss_pred ccccCCccCCCceEEEeeeccccccccCchHHHHHHHHH-HHhcCCcEEEEEe
Q 006986 437 LRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQM-AKSLNPIVVTLAE 488 (622)
Q Consensus 437 L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~-ir~L~P~Ivtl~E 488 (622)
+.. ...=++|+.|+ ++++ +.+++. .+-|+|.-+++++
T Consensus 104 ~~~----~~~fD~I~s~~---~~~~--------~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 104 FQH----EEQFDVITSRA---LASL--------NVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred ccc----cCCccEEEehh---hhCH--------HHHHHHHHHhcCCCCEEEEE
Confidence 421 11224666655 4432 334444 3558999777765
No 71
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=43.40 E-value=35 Score=38.73 Aligned_cols=16 Identities=44% Similarity=0.472 Sum_probs=10.1
Q ss_pred HHHHHHHHHhhhhhhhhh
Q 006986 526 ERFQVERQILGPRIANLL 543 (622)
Q Consensus 526 eR~~vE~~~lgreI~niV 543 (622)
|..+||+ +..+|.|.+
T Consensus 527 epkrVee--lqnkIi~~L 542 (605)
T KOG4217|consen 527 EPKRVEE--LQNKIINCL 542 (605)
T ss_pred CcchHHH--HHHHHHHHH
Confidence 4455777 466777765
No 72
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=43.27 E-value=37 Score=25.68 Aligned_cols=38 Identities=24% Similarity=0.262 Sum_probs=25.7
Q ss_pred ceEEEeeeccccccccCchHHHHHHHHHHHhcCCcEEEEE
Q 006986 448 EALVVNFMLQLNSLLDDNRLAVENALQMAKSLNPIVVTLA 487 (622)
Q Consensus 448 EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~ir~L~P~Ivtl~ 487 (622)
|.+-|||....-++.+ -...+.+++.|+.++|+-|+++
T Consensus 1 e~i~v~a~v~~~~fSg--Had~~~L~~~i~~~~p~~vilV 38 (43)
T PF07521_consen 1 EMIPVRARVEQIDFSG--HADREELLEFIEQLNPRKVILV 38 (43)
T ss_dssp CEEE--SEEEESGCSS--S-BHHHHHHHHHHHCSSEEEEE
T ss_pred CEEEeEEEEEEEeecC--CCCHHHHHHHHHhcCCCEEEEe
Confidence 4566777765545443 2356899999999999998887
No 73
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.92 E-value=35 Score=39.81 Aligned_cols=16 Identities=19% Similarity=0.428 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhhhcc
Q 006986 503 KNALKYYTAVFESLEP 518 (622)
Q Consensus 503 ~eAL~yYsalFDSLea 518 (622)
.+=+.-|+.+|.++|.
T Consensus 634 ~tW~evf~~lfn~veg 649 (728)
T KOG4592|consen 634 ATWLEVFSDLFNCVEG 649 (728)
T ss_pred HHHHHHHHHHHHhhhe
Confidence 3344556667776653
No 74
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=42.84 E-value=11 Score=42.59 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=19.0
Q ss_pred cchhHH----HHHHHHHHHhhcCCeeEEeecc
Q 006986 337 SKFAYL----TANQAILEATENASHIHIVDFG 364 (622)
Q Consensus 337 ~kfah~----tANqAILEA~~g~~~VHIVDfg 364 (622)
++.+|+ +-.+|=||-++..+.+||-.+-
T Consensus 414 LRlgHLkKEEaeiqaElERLErvrnlHiRELK 445 (775)
T KOG1151|consen 414 LRLGHLKKEEAEIQAELERLERVRNLHIRELK 445 (775)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466776 4456667777777778876654
No 75
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=42.05 E-value=2.5e+02 Score=28.42 Aligned_cols=43 Identities=19% Similarity=0.353 Sum_probs=28.6
Q ss_pred HHHHHHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCC
Q 006986 344 ANQAILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPA 396 (622)
Q Consensus 344 ANqAILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~ 396 (622)
.-..+++.+...+.-+|+|+|.|.|. +...|+.+ | -++++||.
T Consensus 30 ~a~~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~--~----~~v~~~D~ 72 (251)
T PRK10258 30 SADALLAMLPQRKFTHVLDAGCGPGW----MSRYWRER--G----SQVTALDL 72 (251)
T ss_pred HHHHHHHhcCccCCCeEEEeeCCCCH----HHHHHHHc--C----CeEEEEEC
Confidence 34455666654445579999999994 55666653 2 37899974
No 76
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=41.64 E-value=1.9e+02 Score=27.49 Aligned_cols=41 Identities=22% Similarity=0.363 Sum_probs=27.4
Q ss_pred HHHHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCC
Q 006986 346 QAILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPA 396 (622)
Q Consensus 346 qAILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~ 396 (622)
..|++.+.-...=+|+|+|.|.|. |...|+.| + -++|+|+.
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~----lt~~l~~~-~-----~~v~~vE~ 43 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGA----LTEELLER-A-----ARVTAIEI 43 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccH----HHHHHHhc-C-----CeEEEEEC
Confidence 346666654444589999999886 44555555 2 27899974
No 77
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=41.24 E-value=22 Score=40.30 Aligned_cols=8 Identities=25% Similarity=0.679 Sum_probs=3.5
Q ss_pred cccccccc
Q 006986 456 LQLNSLLD 463 (622)
Q Consensus 456 ~~Lh~Ll~ 463 (622)
|.|.++++
T Consensus 617 FGLSKIMd 624 (775)
T KOG1151|consen 617 FGLSKIMD 624 (775)
T ss_pred cchhhhcc
Confidence 44444443
No 78
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=41.08 E-value=2.7e+02 Score=27.35 Aligned_cols=42 Identities=21% Similarity=0.273 Sum_probs=25.6
Q ss_pred HHHHHHHhhc---CCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCC
Q 006986 345 NQAILEATEN---ASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPA 396 (622)
Q Consensus 345 NqAILEA~~g---~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~ 396 (622)
-+.+++.+.. ....+|+|+|.+.|.- ...|+.+ | .++|||+.
T Consensus 49 ~~~~~~~l~~~~~~~~~~vLDvGcG~G~~----~~~l~~~--~----~~v~~~D~ 93 (230)
T PRK07580 49 RDTVLSWLPADGDLTGLRILDAGCGVGSL----SIPLARR--G----AKVVASDI 93 (230)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHH----HHHHHHc--C----CEEEEEEC
Confidence 3344444432 3456899999999953 3445543 2 24899974
No 79
>PF04684 BAF1_ABF1: BAF1 / ABF1 chromatin reorganising factor; InterPro: IPR006774 ABF1 is a sequence-specific DNA binding protein involved in transcription activation, gene silencing and initiation of DNA replication. ABF1 is known to remodel chromatin, and it is proposed that it mediates its effects on transcription and gene expression by modifying local chromatin architecture []. These functions require a conserved stretch of 20 amino acids in the C-terminal region of ABF1 (amino acids 639 to 662 Saccharomyces cerevisiae (P14164 from SWISSPROT)) []. The N-terminal two thirds of the protein are necessary for DNA binding, and the N terminus (amino acids 9 to 91 in S. cerevisiae) is thought to contain a novel zinc-finger motif which may stabilise the protein structure [].; GO: 0003677 DNA binding, 0006338 chromatin remodeling, 0005634 nucleus
Probab=38.82 E-value=8.6 Score=43.27 Aligned_cols=6 Identities=17% Similarity=0.263 Sum_probs=2.8
Q ss_pred ccccCc
Q 006986 3 YMCADS 8 (622)
Q Consensus 3 ~~~~~~ 8 (622)
|+...+
T Consensus 277 ~~~~~~ 282 (496)
T PF04684_consen 277 YNMPPG 282 (496)
T ss_pred ccCCCc
Confidence 554444
No 80
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=38.46 E-value=10 Score=45.62 Aligned_cols=7 Identities=43% Similarity=0.496 Sum_probs=0.0
Q ss_pred HHHhhcc
Q 006986 276 LVRLRGS 282 (622)
Q Consensus 276 L~~L~~~ 282 (622)
|.+||++
T Consensus 540 ~eK~~qL 546 (799)
T PF09606_consen 540 LEKLRQL 546 (799)
T ss_dssp -------
T ss_pred HHHHHHh
Confidence 3344443
No 81
>PRK14968 putative methyltransferase; Provisional
Probab=36.56 E-value=3.7e+02 Score=25.31 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=23.0
Q ss_pred CCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCC
Q 006986 355 ASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPA 396 (622)
Q Consensus 355 ~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~ 396 (622)
.+.-.|+|+|.+.|. +...|+.+ | .+|+|++.
T Consensus 22 ~~~~~vLd~G~G~G~----~~~~l~~~--~----~~v~~~D~ 53 (188)
T PRK14968 22 KKGDRVLEVGTGSGI----VAIVAAKN--G----KKVVGVDI 53 (188)
T ss_pred cCCCEEEEEccccCH----HHHHHHhh--c----ceEEEEEC
Confidence 344579999999998 55666665 2 47889873
No 82
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=36.47 E-value=95 Score=35.43 Aligned_cols=16 Identities=13% Similarity=0.247 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHhhc
Q 006986 292 RVAYYFTEALYKRLTQ 307 (622)
Q Consensus 292 RlA~yFaeAL~~Rl~~ 307 (622)
|.-.+.+-++++-+.+
T Consensus 328 RfQKCL~VGMVKEVVR 343 (605)
T KOG4217|consen 328 RFQKCLAVGMVKEVVR 343 (605)
T ss_pred hHhHHHHhhhhhhhee
Confidence 3444444555555544
No 83
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=36.36 E-value=3e+02 Score=27.42 Aligned_cols=33 Identities=24% Similarity=0.508 Sum_probs=22.4
Q ss_pred CeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCC
Q 006986 356 SHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPA 396 (622)
Q Consensus 356 ~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~ 396 (622)
+..+|+|+|.|.| .+.-.|+.+. | ..+++||+.
T Consensus 87 ~~~~ilDig~G~G----~~~~~l~~~~---~-~~~v~~iD~ 119 (251)
T TIGR03534 87 GPLRVLDLGTGSG----AIALALAKER---P-DARVTAVDI 119 (251)
T ss_pred CCCeEEEEeCcHh----HHHHHHHHHC---C-CCEEEEEEC
Confidence 4468999999999 3444445432 2 368999974
No 84
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=35.30 E-value=60 Score=39.14 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=20.2
Q ss_pred eEEEeeeccccccccCchHHHHHH-------HHHHHhcCCcEEE
Q 006986 449 ALVVNFMLQLNSLLDDNRLAVENA-------LQMAKSLNPIVVT 485 (622)
Q Consensus 449 aLaVN~~~~Lh~Ll~~~~~~~~~~-------L~~ir~L~P~Ivt 485 (622)
.=+.|+..-|||+-..+....+.+ -..|++|.-++.+
T Consensus 876 pd~l~F~ddl~hv~kaSrvnad~ikK~~~~m~~~ik~Le~dlk~ 919 (1102)
T KOG1924|consen 876 PDILKFPDDLEHVEKASRVNADEIKKNLQQMENQIKKLERDLKN 919 (1102)
T ss_pred hhhhcchhhHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677778888765544322332 3356666554433
No 85
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=34.91 E-value=57 Score=39.27 Aligned_cols=12 Identities=17% Similarity=0.183 Sum_probs=6.7
Q ss_pred CCccccccchhh
Q 006986 549 GAKRERVEDIEN 560 (622)
Q Consensus 549 ~~R~ER~E~~~~ 560 (622)
.+|.||.++.++
T Consensus 1018 qEr~erQqrk~a 1029 (1102)
T KOG1924|consen 1018 QERLERQQRKKA 1029 (1102)
T ss_pred HHHHHHhhhhHH
Confidence 356666665444
No 86
>COG4952 Predicted sugar isomerase [Cell envelope biogenesis, outer membrane]
Probab=34.36 E-value=2.4e+02 Score=30.49 Aligned_cols=143 Identities=20% Similarity=0.298 Sum_probs=80.4
Q ss_pred HHHHHHHhhhcCCeEEEEEeecCccCccccCCccCCCceEEEeeeccccccccC-chHHHHHHHHHH---HhcCCcEEEE
Q 006986 411 GDRLREFAGSLSLNLEFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDD-NRLAVENALQMA---KSLNPIVVTL 486 (622)
Q Consensus 411 G~rL~~fA~~lgvpFeF~~V~~~~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~-~~~~~~~~L~~i---r~L~P~Ivtl 486 (622)
-+||.+||..+|+-|. ++.++ .|.-.+|...---. -.|.|--.. ...+++..|..| +++.-|++|+
T Consensus 109 ~~~Lke~a~~~GL~fd--AmNsN-------tFsDa~~q~~sYKy-GSLsh~d~~tR~qAieHnlECveIg~~~GSKaltv 178 (430)
T COG4952 109 PERLKEFASALGLGFD--AMNSN-------TFSDAPGQGHSYKY-GSLSHTDAATRRQAIEHNLECVEIGKALGSKALTV 178 (430)
T ss_pred HHHHHHHHHhcCCCcc--ccCcc-------cccCCccccccccc-ccccCccHHHHHHHHHhhHHHHHHHHhhCcceEEE
Confidence 4689999999998764 33221 11111222110000 012221111 112455666654 7899999988
Q ss_pred EeecCC-C-CCCchHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhhhhhhhhcccccCCccccccchhhHHHH
Q 006986 487 AEYEAN-L-NRTGFLARFKNALKYYTAVFESLEPNMTTDSDERFQVERQILGPRIANLLAPEKQGAKRERVEDIENWRIF 564 (622)
Q Consensus 487 ~E~Ea~-~-Ns~~F~~RF~eAL~yYsalFDSLea~l~~~s~eR~~vE~~~lgreI~niVAcEgg~~R~ER~E~~~~Wr~r 564 (622)
---+.+ . ....|..+|+.-|.-..++++.|-+ +.|+..|..+|-+..-..|..+=|.... -...
T Consensus 179 WvgDGsnfPGQ~nF~r~feRyl~sm~~iY~~lPa------Dw~lf~EhKmfEPAFYsTvvqDWGtnYL--------ia~~ 244 (430)
T COG4952 179 WVGDGSNFPGQSNFTRAFERYLDSMKAIYAALPA------DWRLFTEHKMFEPAFYSTVVQDWGTNYL--------IAEE 244 (430)
T ss_pred EeccCCCCCCchhHHHHHHHHHHHHHHHHHhCch------hhhHHHhhhcccchhhhcccccccHHHH--------HHHH
Confidence 655543 2 2347999998877777777775533 4788899998888776666554221110 1122
Q ss_pred HHhCCCcccCCCh
Q 006986 565 MENSDFEGIPFSH 577 (622)
Q Consensus 565 m~~AGF~~v~ls~ 577 (622)
+..--|+.|-|+.
T Consensus 245 LGerA~cLVDLGH 257 (430)
T COG4952 245 LGERAFCLVDLGH 257 (430)
T ss_pred hccceEEEEecCC
Confidence 4445577777774
No 87
>PF06085 Rz1: Lipoprotein Rz1 precursor; InterPro: IPR010346 This family consists of several bacteria and phage lipoprotein Rz1 precursors. Rz1 is a proline-rich lipoprotein from bacteriophage lambda, which is known to have fusogenic properties. Rz1-induced liposome fusion is thought to be mediated primarily by the generation of local perturbation in the bilayer lipid membrane and to a lesser extent by electrostatic forces [].; GO: 0019064 viral envelope fusion with host membrane, 0019867 outer membrane
Probab=33.99 E-value=32 Score=26.13 Aligned_cols=16 Identities=19% Similarity=0.032 Sum_probs=13.1
Q ss_pred hhhHHHhhhhcCCCCC
Q 006986 207 ESAVKELAKQVSPSPS 222 (622)
Q Consensus 207 ~~~~~~~~~~~~~~~~ 222 (622)
.+.+..|..|+|+|..
T Consensus 24 ~n~~~~Ld~iis~S~~ 39 (40)
T PF06085_consen 24 PNWQQLLDGIISVSET 39 (40)
T ss_pred hhhHHHhhceecccCC
Confidence 4788999999998764
No 88
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=33.15 E-value=3.6e+02 Score=27.65 Aligned_cols=20 Identities=15% Similarity=0.348 Sum_probs=14.7
Q ss_pred chhhHHHHHHhCCCcccCCC
Q 006986 557 DIENWRIFMENSDFEGIPFS 576 (622)
Q Consensus 557 ~~~~Wr~rm~~AGF~~v~ls 576 (622)
....|...|+.+||..+.+.
T Consensus 210 ~~~e~~~~l~~aGf~~v~i~ 229 (272)
T PRK11873 210 QEEEYLAMLAEAGFVDITIQ 229 (272)
T ss_pred CHHHHHHHHHHCCCCceEEE
Confidence 34578888999999876553
No 89
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=32.83 E-value=3.7e+02 Score=28.85 Aligned_cols=113 Identities=16% Similarity=0.138 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhc
Q 006986 342 LTANQAILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSL 421 (622)
Q Consensus 342 ~tANqAILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~l 421 (622)
+..-..|++-+.=+.--||+|||. .|=.|+.-.|.+-+ +++|||+.. ..-+....+| ++..
T Consensus 58 ~~k~~~~~~kl~L~~G~~lLDiGC----GWG~l~~~aA~~y~-----v~V~GvTlS------~~Q~~~~~~r----~~~~ 118 (283)
T COG2230 58 RAKLDLILEKLGLKPGMTLLDIGC----GWGGLAIYAAEEYG-----VTVVGVTLS------EEQLAYAEKR----IAAR 118 (283)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCC----ChhHHHHHHHHHcC-----CEEEEeeCC------HHHHHHHHHH----HHHc
Confidence 333444555555456789999876 47789999998863 689999742 1223333333 3445
Q ss_pred CCeEEEEEeecCccCccccCCccCCCceEEEeeeccccccccCchHHHHHHHHHHHh-cCCcEE
Q 006986 422 SLNLEFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMAKS-LNPIVV 484 (622)
Q Consensus 422 gvpFeF~~V~~~~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~ir~-L~P~Iv 484 (622)
|+.=..+.++..+.++... +=.|-++=.+.|+-.+ ..+.+++++++ |+|.-.
T Consensus 119 gl~~~v~v~l~d~rd~~e~--------fDrIvSvgmfEhvg~~---~~~~ff~~~~~~L~~~G~ 171 (283)
T COG2230 119 GLEDNVEVRLQDYRDFEEP--------FDRIVSVGMFEHVGKE---NYDDFFKKVYALLKPGGR 171 (283)
T ss_pred CCCcccEEEeccccccccc--------cceeeehhhHHHhCcc---cHHHHHHHHHhhcCCCce
Confidence 6553233334444444432 1123444556676543 35788887755 577743
No 90
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=31.08 E-value=1.2e+02 Score=28.28 Aligned_cols=40 Identities=33% Similarity=0.489 Sum_probs=27.1
Q ss_pred hcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCC
Q 006986 353 ENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPA 396 (622)
Q Consensus 353 ~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~ 396 (622)
...+.++|||||-|.|.==-.|-..|.+. . + .++|+||+.
T Consensus 22 ~~~~~~~vvD~GsG~GyLs~~La~~l~~~--~-~-~~~v~~iD~ 61 (141)
T PF13679_consen 22 ESKRCITVVDLGSGKGYLSRALAHLLCNS--S-P-NLRVLGIDC 61 (141)
T ss_pred ccCCCCEEEEeCCChhHHHHHHHHHHHhc--C-C-CCeEEEEEC
Confidence 45689999999999995333333333333 2 3 599999984
No 91
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=30.29 E-value=4.3e+02 Score=24.13 Aligned_cols=100 Identities=16% Similarity=0.115 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhhhcCCeEE--EEEeecCccCccccCC-----ccCCCc--eEEEeeeccccccccCchHHHHHHHHHH
Q 006986 406 SLLATGDRLREFAGSLSLNLE--FEPILIPIRKLRASSF-----RVDPNE--ALVVNFMLQLNSLLDDNRLAVENALQMA 476 (622)
Q Consensus 406 ~L~~tG~rL~~fA~~lgvpFe--F~~V~~~~e~L~~~~l-----~~~~~E--aLaVN~~~~Lh~Ll~~~~~~~~~~L~~i 476 (622)
+++.--+.|.+||+..|..+. |.-...+-...+...| .+..|+ +|+|--.-+|-+ .......+++.+
T Consensus 16 s~~~Q~~~~~~~a~~~g~~i~~~~~d~~~Sg~~~~Rp~l~~ll~~~~~g~~~~ivv~~~~Rl~R----~~~~~~~~~~~l 91 (148)
T smart00857 16 SLERQLEALRAYAKANGWEVVRIYEDEGVSGKKADRPGLQRLLADLRAGDIDVLVVYKLDRLGR----SLRDLLALLELL 91 (148)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHcCCCCEEEEeccchhhC----cHHHHHHHHHHH
Confidence 355556779999999998753 3322111111122222 145677 888877766654 233456788888
Q ss_pred HhcCCcEEEEEeecCCCCCCchHHHHHHHHHHHHH
Q 006986 477 KSLNPIVVTLAEYEANLNRTGFLARFKNALKYYTA 511 (622)
Q Consensus 477 r~L~P~Ivtl~E~Ea~~Ns~~F~~RF~eAL~yYsa 511 (622)
+..+=+|+++.|...+.+ +...++...+..+.+
T Consensus 92 ~~~gi~l~~~~~~~~~~~--~~~~~~~~~i~~~~a 124 (148)
T smart00857 92 EKKGVRLVSVTEGIEDTS--TPAGRLMLDILAALA 124 (148)
T ss_pred HHCCCEEEECcCCCCCCC--CHHHHHHHHHHHHHH
Confidence 888866666655332333 334454444443333
No 92
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=29.83 E-value=6.7e+02 Score=26.28 Aligned_cols=46 Identities=26% Similarity=0.341 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhc--CCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCC
Q 006986 342 LTANQAILEATEN--ASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPA 396 (622)
Q Consensus 342 ~tANqAILEA~~g--~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~ 396 (622)
..+.+..+++++. ...-.|+|+|.|.|. |..+++.+ |. -+++||+.
T Consensus 143 h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~----lai~aa~~--g~---~~V~avDi 190 (288)
T TIGR00406 143 HPTTSLCLEWLEDLDLKDKNVIDVGCGSGI----LSIAALKL--GA---AKVVGIDI 190 (288)
T ss_pred CHHHHHHHHHHHhhcCCCCEEEEeCCChhH----HHHHHHHc--CC---CeEEEEEC
Confidence 3445556666542 234689999999985 33445543 21 37899974
No 93
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=29.64 E-value=1.4e+02 Score=29.87 Aligned_cols=111 Identities=10% Similarity=0.132 Sum_probs=68.4
Q ss_pred CeeEEeecccc---cccchhHHHHHHhcCCCCCCceEEE------eecCCCCCCCChHHHHHHHHHHHHHHhhhcCCeEE
Q 006986 356 SHIHIVDFGIV---QGIQWSFLLQALANRPTGKPVKVRI------SGIPAPALGKSPAASLLATGDRLREFAGSLSLNLE 426 (622)
Q Consensus 356 ~~VHIVDfgI~---~G~QWpsLiqaLA~R~~GpP~~LRI------TgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvpFe 426 (622)
.+|+||.|=-+ -+..=..+|.+|+.+ | +.| |||+. .+....++.-+..|++..++.|-
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~----~~~~~y~~t~~IN~-------dd~~~~~~~fVk~fie~~~~~~P 125 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAA--K----FPPVKYQTTTIINA-------DDAIVGTGMFVKSSAKKGKKENP 125 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHc--C----CCcccccceEEEEC-------ccchhhHHHHHHHHHHHhcccCC
Confidence 47999998643 346667899999654 2 556 78852 12355678889999999988887
Q ss_pred EEEeecCccCccccCCccCC-Cce-EEEeeecccccccc--CchHHHHHHHHHHHhc
Q 006986 427 FEPILIPIRKLRASSFRVDP-NEA-LVVNFMLQLNSLLD--DNRLAVENALQMAKSL 479 (622)
Q Consensus 427 F~~V~~~~e~L~~~~l~~~~-~Ea-LaVN~~~~Lh~Ll~--~~~~~~~~~L~~ir~L 479 (622)
|..++..-+......+++.. .++ ++||-.-.+..... -+....+.++..|++|
T Consensus 126 ~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~~li~~l 182 (184)
T TIGR01626 126 WSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVISLVNGL 182 (184)
T ss_pred cceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 66665322222223455543 366 67877665544322 1233456677777654
No 94
>KOG3537 consensus Adaptor protein NUMB [Signal transduction mechanisms]
Probab=29.54 E-value=84 Score=35.53 Aligned_cols=12 Identities=8% Similarity=0.188 Sum_probs=4.8
Q ss_pred CCCCCCCCCCCC
Q 006986 82 PGFPDPLDTGES 93 (622)
Q Consensus 82 ~gfpdpfq~g~~ 93 (622)
+.|+...+.|++
T Consensus 439 ~sy~v~p~sg~P 450 (543)
T KOG3537|consen 439 QSYSVLPKSGPP 450 (543)
T ss_pred cccccccCCCCC
Confidence 334444444433
No 95
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=29.36 E-value=1.8e+02 Score=30.34 Aligned_cols=54 Identities=13% Similarity=0.262 Sum_probs=34.7
Q ss_pred cCCccchhH-HHHHHHHHHH----hhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCC
Q 006986 333 ACPYSKFAY-LTANQAILEA----TENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPA 396 (622)
Q Consensus 333 ~sP~~kfah-~tANqAILEA----~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~ 396 (622)
..|=-+++. |..|..|++. +.-.+.-+|+|+|.|.|. |...|+.+ + + ++|||+.
T Consensus 14 ~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~----lt~~L~~~--~-~---~v~avE~ 72 (272)
T PRK00274 14 HRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGA----LTEPLLER--A-A---KVTAVEI 72 (272)
T ss_pred CCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccH----HHHHHHHh--C-C---cEEEEEC
Confidence 345555555 5566555554 333455689999999984 55666666 2 2 7899974
No 96
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=29.09 E-value=3.5e+02 Score=29.24 Aligned_cols=34 Identities=24% Similarity=0.439 Sum_probs=23.8
Q ss_pred eeEE-eecccc-cccch---hHHHHHHhcCCCCCCceEEEeecC
Q 006986 357 HIHI-VDFGIV-QGIQW---SFLLQALANRPTGKPVKVRISGIP 395 (622)
Q Consensus 357 ~VHI-VDfgI~-~G~QW---psLiqaLA~R~~GpP~~LRITgI~ 395 (622)
+||| ||-|++ .|+.+ ..|++.+.. .| .|+|.||-
T Consensus 118 ~vhlkvDtGm~R~G~~~~e~~~~~~~i~~----~~-~l~~~Gi~ 156 (353)
T cd06815 118 KIILMVDLGDLREGVLPEDLLDFVEEILK----LP-GIELVGIG 156 (353)
T ss_pred ceEEEEecCCCccccCHHHHHHHHHHHhC----CC-CcEEEecc
Confidence 6898 899986 68764 455655533 23 59999993
No 97
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=28.51 E-value=6.3e+02 Score=25.54 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=21.5
Q ss_pred CeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCC
Q 006986 356 SHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPA 396 (622)
Q Consensus 356 ~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~ 396 (622)
+.-.|+|.|.|.|. -+..||.+ | ..+|||+.
T Consensus 37 ~~~rvL~~gCG~G~----da~~LA~~--G----~~V~avD~ 67 (218)
T PRK13255 37 AGSRVLVPLCGKSL----DMLWLAEQ--G----HEVLGVEL 67 (218)
T ss_pred CCCeEEEeCCCChH----hHHHHHhC--C----CeEEEEcc
Confidence 34588999999883 33445654 3 58999984
No 98
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=27.44 E-value=1.7e+02 Score=34.31 Aligned_cols=20 Identities=35% Similarity=0.715 Sum_probs=11.7
Q ss_pred CCCCCCChhhHHHhhhhcCC
Q 006986 200 PPPLVPPESAVKELAKQVSP 219 (622)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~ 219 (622)
|++.++...+.+-+.|+-++
T Consensus 547 p~p~p~sErl~~aveAfys~ 566 (757)
T KOG4368|consen 547 PPPMPPSERLLAAVEAFYSP 566 (757)
T ss_pred CCCCChHHHHHHHHHHhhcc
Confidence 34445555666666777763
No 99
>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane
Probab=26.36 E-value=65 Score=26.26 Aligned_cols=38 Identities=16% Similarity=0.280 Sum_probs=32.1
Q ss_pred HHHHHHHHhhhccCCCCCCHHHHHHHHHHhhhhhhhhhccc
Q 006986 506 LKYYTAVFESLEPNMTTDSDERFQVERQILGPRIANLLAPE 546 (622)
Q Consensus 506 L~yYsalFDSLea~l~~~s~eR~~vE~~~lgreI~niVAcE 546 (622)
...|..+++.|+ .+|.++.-|..+|.. -++-.+||..+
T Consensus 8 ~~lY~~~L~~L~-~~P~~a~YR~~tE~i--t~~Rl~iv~~~ 45 (57)
T PF04716_consen 8 ISLYNKTLKALK-KIPEDAAYRQYTEAI--TKHRLKIVEEE 45 (57)
T ss_pred HHHHHHHHHHHH-hCCCccHHHHHHHHH--HHHHHHHHHcc
Confidence 357999999999 789999999999994 47778888766
No 100
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.33 E-value=77 Score=32.12 Aligned_cols=133 Identities=22% Similarity=0.200 Sum_probs=75.9
Q ss_pred hcCCeeEE---eeccc----------ccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhh
Q 006986 353 ENASHIHI---VDFGI----------VQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAG 419 (622)
Q Consensus 353 ~g~~~VHI---VDfgI----------~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~ 419 (622)
.++..||| ||+.| -.|.-=.+||--||.-..+.-..+||-|-+...++++ ...+|+ ++
T Consensus 18 ~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd-------~rA~~R--~~ 88 (228)
T COG4181 18 QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDED-------ARAALR--AR 88 (228)
T ss_pred CCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHH-------HHHHhh--cc
Confidence 35567777 45554 2577788999999976544445899998754333321 122232 45
Q ss_pred hcCCeEE-EEEe--ecCccCccccC-C---------ccCCCceEEEeeeccccccccCchHH--HHHHHHHHHhcCCcEE
Q 006986 420 SLSLNLE-FEPI--LIPIRKLRASS-F---------RVDPNEALVVNFMLQLNSLLDDNRLA--VENALQMAKSLNPIVV 484 (622)
Q Consensus 420 ~lgvpFe-F~~V--~~~~e~L~~~~-l---------~~~~~EaLaVN~~~~Lh~Ll~~~~~~--~~~~L~~ir~L~P~Iv 484 (622)
..|+-|+ |+-| .+.+|++.... | .....+-.+|-.--+|+|++..-... -.-.|.+.-.-+|+|+
T Consensus 89 ~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vL 168 (228)
T COG4181 89 HVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVL 168 (228)
T ss_pred ceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEE
Confidence 5666665 5544 23445443221 1 11122345678888999988643221 1223444445689998
Q ss_pred EEEeecCCCC
Q 006986 485 TLAEYEANLN 494 (622)
Q Consensus 485 tl~E~Ea~~N 494 (622)
+--|...|+.
T Consensus 169 fADEPTGNLD 178 (228)
T COG4181 169 FADEPTGNLD 178 (228)
T ss_pred eccCCCCCcc
Confidence 8878777754
No 101
>PF13552 DUF4127: Protein of unknown function (DUF4127)
Probab=26.19 E-value=1.3e+02 Score=34.54 Aligned_cols=62 Identities=18% Similarity=0.269 Sum_probs=45.6
Q ss_pred cccccccCchHHHHHHHHHHHhcCCcEEEEE----e----ecCCCCCCchHHHHHHHHHHHHHHHhhhcc
Q 006986 457 QLNSLLDDNRLAVENALQMAKSLNPIVVTLA----E----YEANLNRTGFLARFKNALKYYTAVFESLEP 518 (622)
Q Consensus 457 ~Lh~Ll~~~~~~~~~~L~~ir~L~P~Ivtl~----E----~Ea~~Ns~~F~~RF~eAL~yYsalFDSLea 518 (622)
+.|++..+....+-..|+.+|+.+|++=+.+ = ...+...|..-..+...++.|+.+.|-.+.
T Consensus 78 R~~~~~~~~~~~rl~~l~~lk~~~p~~~iyaf~~ImR~~~~~~~~eep~yy~~yg~~i~~~~~l~dk~~~ 147 (497)
T PF13552_consen 78 RIHHLSLEEALERLERLRELKARNPNLPIYAFSTIMRTPPYSSSDEEPDYYADYGRKIFRYSQLLDKEEG 147 (497)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEEEEeccCCCCCCCCCcHHHHHHHHHHHHHHHhhhhhhh
Confidence 5566554444567788999999999953332 1 224555688999999999999999999883
No 102
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=25.07 E-value=72 Score=33.72 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=21.7
Q ss_pred hcCCeeEEeecccccccchhHHHHHHhc
Q 006986 353 ENASHIHIVDFGIVQGIQWSFLLQALAN 380 (622)
Q Consensus 353 ~g~~~VHIVDfgI~~G~QWpsLiqaLA~ 380 (622)
.|.+.|||||++-+.+.+ -.+|+++++
T Consensus 55 ~Ga~~lHvVDLdgg~~~n-~~~i~~i~~ 81 (262)
T PLN02446 55 DGLTGGHVIMLGADDASL-AAALEALRA 81 (262)
T ss_pred CCCCEEEEEECCCCCccc-HHHHHHHHh
Confidence 588999999999877777 556777776
No 103
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=24.60 E-value=38 Score=37.30 Aligned_cols=14 Identities=50% Similarity=1.016 Sum_probs=11.2
Q ss_pred hcCCeeEEeecccc
Q 006986 353 ENASHIHIVDFGIV 366 (622)
Q Consensus 353 ~g~~~VHIVDfgI~ 366 (622)
..+..|||||||+.
T Consensus 163 k~~n~IhiiDFGmA 176 (449)
T KOG1165|consen 163 KDANVIHIIDFGMA 176 (449)
T ss_pred CCCceEEEEeccch
Confidence 34578999999983
No 104
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=24.48 E-value=2.8e+02 Score=27.21 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=22.0
Q ss_pred eeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCC
Q 006986 357 HIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPA 396 (622)
Q Consensus 357 ~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~ 396 (622)
.-.|+|+|.|.|.= +-.||.+. | ...++||+.
T Consensus 17 ~~~ilDiGcG~G~~----~~~la~~~---p-~~~v~gvD~ 48 (194)
T TIGR00091 17 APLHLEIGCGKGRF----LIDMAKQN---P-DKNFLGIEI 48 (194)
T ss_pred CceEEEeCCCccHH----HHHHHHhC---C-CCCEEEEEe
Confidence 44799999999864 44555442 3 468999974
No 105
>TIGR00492 alr alanine racemase. This enzyme interconverts L-alanine and D-alanine. Its primary function is to generate D-alanine for cell wall formation. With D-alanine-D-alanine ligase, it makes up the D-alanine branch of the peptidoglycan biosynthetic route. It is a monomer with one pyridoxal phosphate per subunit. In E. coli, the ortholog is duplicated so that a second isozyme, DadX, is present. DadX, a paralog of the biosynthetic Alr, is induced by D- or L-alanine and is involved in catabolism.
Probab=24.39 E-value=3.9e+02 Score=28.89 Aligned_cols=71 Identities=21% Similarity=0.363 Sum_probs=36.5
Q ss_pred CeeEE-eecccc-cccc---hhHHHHHHhcCCCCCCceEE-EeecCCCCCCC-ChH-HHHHHHHHHHHHHhhhc---CCe
Q 006986 356 SHIHI-VDFGIV-QGIQ---WSFLLQALANRPTGKPVKVR-ISGIPAPALGK-SPA-ASLLATGDRLREFAGSL---SLN 424 (622)
Q Consensus 356 ~~VHI-VDfgI~-~G~Q---WpsLiqaLA~R~~GpP~~LR-ITgI~~P~~g~-~~~-~~L~~tG~rL~~fA~~l---gvp 424 (622)
-+||| ||-|++ .|+. +..+++.+... | .|+ |.||....... ... +...+.-+++.++++.+ |++
T Consensus 120 ~~V~l~VdtGm~R~Gi~~~e~~~~~~~i~~~----~-~l~~l~Gi~tH~~~~~~~~~~~~~~q~~~f~~~~~~l~~~g~~ 194 (367)
T TIGR00492 120 LKVHLKIDTGMNRLGVKPDEAALFVQKLRQL----K-KFLELEGIFSHFATADEPKTGTTQKQIERFNSFLEGLKQQNIE 194 (367)
T ss_pred eEEEEEeeCCCCCCCCChHHHHHHHHHHHhC----C-CCCCceEEEcCCCCCCCCCChHHHHHHHHHHHHHHHHhhcCCC
Confidence 37898 898864 5775 44555544332 3 488 99995432111 111 12333334444444433 665
Q ss_pred EEEEEee
Q 006986 425 LEFEPIL 431 (622)
Q Consensus 425 FeF~~V~ 431 (622)
+++..+.
T Consensus 195 ~~~~~~~ 201 (367)
T TIGR00492 195 PPFRHIA 201 (367)
T ss_pred CCcEEcc
Confidence 5554443
No 106
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=24.24 E-value=86 Score=32.99 Aligned_cols=34 Identities=9% Similarity=0.131 Sum_probs=22.2
Q ss_pred hcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEee
Q 006986 353 ENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISG 393 (622)
Q Consensus 353 ~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITg 393 (622)
.|++.|||||+ +.. ++ .+|+.+++-.+. .|-++|
T Consensus 50 ~Ga~~lHvVDL--g~~-n~-~~i~~i~~~~~~---~v~vGG 83 (253)
T TIGR02129 50 DGVKGCHVIML--GPN-ND-DAAKEALHAYPG---GLQVGG 83 (253)
T ss_pred cCCCEEEEEEC--CCC-cH-HHHHHHHHhCCC---CEEEeC
Confidence 48899999999 444 66 566666654432 255553
No 107
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=23.12 E-value=2.3e+02 Score=29.70 Aligned_cols=112 Identities=28% Similarity=0.338 Sum_probs=65.4
Q ss_pred HHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCeEEEEE
Q 006986 350 EATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEFEP 429 (622)
Q Consensus 350 EA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvpFeF~~ 429 (622)
.-+.-+.---|+|+|.|-|.+= +-|+.|=.+ =.||||+. +.+.|+++..|| .+.+|..
T Consensus 24 a~Vp~~~~~~v~DLGCGpGnsT----elL~~RwP~----A~i~GiDs------S~~Mla~Aa~rl--------p~~~f~~ 81 (257)
T COG4106 24 ARVPLERPRRVVDLGCGPGNST----ELLARRWPD----AVITGIDS------SPAMLAKAAQRL--------PDATFEE 81 (257)
T ss_pred hhCCccccceeeecCCCCCHHH----HHHHHhCCC----CeEeeccC------CHHHHHHHHHhC--------CCCceec
Confidence 3344556678999999999764 556666422 57999974 235555544433 3344431
Q ss_pred eecCccCccccCCcc-CCCceEEEeeeccccccccCchHHHHHHHHHHHhcCCcEEEEEeecCCCCCC
Q 006986 430 ILIPIRKLRASSFRV-DPNEALVVNFMLQLNSLLDDNRLAVENALQMAKSLNPIVVTLAEYEANLNRT 496 (622)
Q Consensus 430 V~~~~e~L~~~~l~~-~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~ir~L~P~Ivtl~E~Ea~~Ns~ 496 (622)
- +|. .++- .+-..|.-|.+|+- |.+ ..+.+=+.+-.|.|.-|.-|---.|+..+
T Consensus 82 a-----Dl~--~w~p~~~~dllfaNAvlqW--lpd----H~~ll~rL~~~L~Pgg~LAVQmPdN~dep 136 (257)
T COG4106 82 A-----DLR--TWKPEQPTDLLFANAVLQW--LPD----HPELLPRLVSQLAPGGVLAVQMPDNLDEP 136 (257)
T ss_pred c-----cHh--hcCCCCccchhhhhhhhhh--ccc----cHHHHHHHHHhhCCCceEEEECCCccCch
Confidence 1 111 2221 13356667777753 443 34667778889999988777544444443
No 108
>KOG3535 consensus Adaptor protein Disabled [Signal transduction mechanisms]
Probab=22.99 E-value=7.3e+02 Score=28.27 Aligned_cols=10 Identities=20% Similarity=0.454 Sum_probs=6.0
Q ss_pred CCCCCCCCCC
Q 006986 163 DPFTSCPSQL 172 (622)
Q Consensus 163 ~~~~~~~~~~ 172 (622)
.||.+++-.|
T Consensus 443 e~~s~~~N~v 452 (557)
T KOG3535|consen 443 EAFSSYFNKV 452 (557)
T ss_pred cchhcccCcc
Confidence 3566666666
No 109
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=22.78 E-value=6e+02 Score=26.98 Aligned_cols=101 Identities=15% Similarity=0.170 Sum_probs=55.0
Q ss_pred CeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCe-EEEEEeecCc
Q 006986 356 SHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLN-LEFEPILIPI 434 (622)
Q Consensus 356 ~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvp-FeF~~V~~~~ 434 (622)
+.-+|+|++.|.|. +--.||.+ | -+++||+.. ...++.+.++ |+..|++ .+|. ...+
T Consensus 173 ~~~~VLDl~cG~G~----~sl~la~~--~----~~V~gvD~s------~~av~~A~~n----~~~~~l~~v~~~--~~D~ 230 (315)
T PRK03522 173 PPRSMWDLFCGVGG----FGLHCATP--G----MQLTGIEIS------AEAIACAKQS----AAELGLTNVQFQ--ALDS 230 (315)
T ss_pred CCCEEEEccCCCCH----HHHHHHhc--C----CEEEEEeCC------HHHHHHHHHH----HHHcCCCceEEE--EcCH
Confidence 34689999999985 33445543 2 278999742 2334443333 3445553 4553 2333
Q ss_pred cCccccCCccCCCceEEEeeeccccccccCchHHHHHHHHHHHhcCCcEEEEEee
Q 006986 435 RKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMAKSLNPIVVTLAEY 489 (622)
Q Consensus 435 e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~ir~L~P~Ivtl~E~ 489 (622)
+++... . ...-++|++|=.- .+.-..+++.+.+++|+.++.+..
T Consensus 231 ~~~~~~-~-~~~~D~Vv~dPPr---------~G~~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 231 TQFATA-Q-GEVPDLVLVNPPR---------RGIGKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred HHHHHh-c-CCCCeEEEECCCC---------CCccHHHHHHHHHcCCCeEEEEEC
Confidence 332211 1 1123677777331 112246777888899988777643
No 110
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=22.64 E-value=2.5e+02 Score=28.08 Aligned_cols=70 Identities=24% Similarity=0.291 Sum_probs=41.6
Q ss_pred CeeEE-eeccc---ccccch---hHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhc----CCe
Q 006986 356 SHIHI-VDFGI---VQGIQW---SFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSL----SLN 424 (622)
Q Consensus 356 ~~VHI-VDfgI---~~G~QW---psLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~l----gvp 424 (622)
-+||| ||-|. ..|+.+ ..+++.+... | .|+|.||..........+...+.-+++.++++.+ |+.
T Consensus 117 ~~v~lkvdtG~~~~R~G~~~~~~~~~~~~i~~~----~-~l~~~Gi~sh~s~~~~~~~~~~~~~~~~~~~~~l~~~~g~~ 191 (222)
T cd00635 117 LDVLVQVNIGGEESKSGVAPEELEELLEEIAAL----P-NLRIRGLMTIAPLTEDPEEVRPYFRELRELRDELGAKGGVN 191 (222)
T ss_pred CcEEEEEecCCCCCCCCCCHHHHHHHHHHHHcC----C-CCcEEEEEEECCCCCChHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 36888 88884 478754 4555555432 3 4888888542111112234555667777777765 577
Q ss_pred EEEEEe
Q 006986 425 LEFEPI 430 (622)
Q Consensus 425 FeF~~V 430 (622)
+++-.+
T Consensus 192 ~~~is~ 197 (222)
T cd00635 192 LKELSM 197 (222)
T ss_pred CCEEEC
Confidence 776655
No 111
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=22.53 E-value=4.4e+02 Score=25.90 Aligned_cols=101 Identities=20% Similarity=0.222 Sum_probs=49.4
Q ss_pred EEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCeEEEEEeecCccCcc
Q 006986 359 HIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEFEPILIPIRKLR 438 (622)
Q Consensus 359 HIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvpFeF~~V~~~~e~L~ 438 (622)
+|+|+|.+.|. ++..|+.+- | ..++|||+.. ...+....+++ +..|+.-....+.....+..
T Consensus 2 ~vLDiGcG~G~----~~~~la~~~---~-~~~v~gid~s------~~~~~~a~~~~----~~~gl~~~i~~~~~d~~~~~ 63 (224)
T smart00828 2 RVLDFGCGYGS----DLIDLAERH---P-HLQLHGYTIS------PEQAEVGRERI----RALGLQGRIRIFYRDSAKDP 63 (224)
T ss_pred eEEEECCCCCH----HHHHHHHHC---C-CCEEEEEECC------HHHHHHHHHHH----HhcCCCcceEEEecccccCC
Confidence 68999998886 344555543 2 3689999741 22333333333 23344332222322221111
Q ss_pred ccCCccCCCceEEEeeeccccccccCchHHHHHHHHHH-HhcCCcEE-EEEe
Q 006986 439 ASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMA-KSLNPIVV-TLAE 488 (622)
Q Consensus 439 ~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~i-r~L~P~Iv-tl~E 488 (622)
+. ..=+.| -+...+||+.+ ...+|+.+ +.|+|.-. ++.+
T Consensus 64 ---~~-~~fD~I--~~~~~l~~~~~-----~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 64 ---FP-DTYDLV--FGFEVIHHIKD-----KMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred ---CC-CCCCEe--ehHHHHHhCCC-----HHHHHHHHHHHcCCCCEEEEEE
Confidence 10 111233 34455667643 24566655 66899954 4444
No 112
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=22.39 E-value=7.4e+02 Score=24.20 Aligned_cols=20 Identities=5% Similarity=0.084 Sum_probs=15.3
Q ss_pred chhhHHHHHHhCCCcccCCC
Q 006986 557 DIENWRIFMENSDFEGIPFS 576 (622)
Q Consensus 557 ~~~~Wr~rm~~AGF~~v~ls 576 (622)
+...|...++.+||+.+.+-
T Consensus 183 ~~~~l~~~l~~~G~~i~~~~ 202 (224)
T TIGR01983 183 KPSELTSWLESAGLRVKDVK 202 (224)
T ss_pred CHHHHHHHHHHcCCeeeeee
Confidence 44578889999999877643
No 113
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=20.94 E-value=8.1e+02 Score=24.15 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=26.9
Q ss_pred HHHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCC
Q 006986 347 AILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPA 396 (622)
Q Consensus 347 AILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~ 396 (622)
.++++++-...-+|+|+|.|.|..=..|.+.+. +. -++++|+.
T Consensus 63 ~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~-----~~--g~V~~iD~ 105 (205)
T PRK13944 63 MMCELIEPRPGMKILEVGTGSGYQAAVCAEAIE-----RR--GKVYTVEI 105 (205)
T ss_pred HHHHhcCCCCCCEEEEECcCccHHHHHHHHhcC-----CC--CEEEEEeC
Confidence 355666544556899999999875444444331 11 27899974
No 114
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=20.88 E-value=7.3e+02 Score=23.61 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=24.4
Q ss_pred HHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCC
Q 006986 348 ILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPA 396 (622)
Q Consensus 348 ILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~ 396 (622)
|++.+...+.-.|+|+|.+.|. +...|+.+ |+ ++++|+.
T Consensus 11 l~~~l~~~~~~~vLdlG~G~G~----~~~~l~~~--~~----~v~~vD~ 49 (179)
T TIGR00537 11 LEANLRELKPDDVLEIGAGTGL----VAIRLKGK--GK----CILTTDI 49 (179)
T ss_pred HHHHHHhcCCCeEEEeCCChhH----HHHHHHhc--CC----EEEEEEC
Confidence 3344433333359999999994 55566654 32 7899974
No 115
>PHA03211 serine/threonine kinase US3; Provisional
Probab=20.36 E-value=3e+02 Score=31.08 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=16.9
Q ss_pred HHHHHHHHhhcCCeeEEeecccccc
Q 006986 344 ANQAILEATENASHIHIVDFGIVQG 368 (622)
Q Consensus 344 ANqAILEA~~g~~~VHIVDfgI~~G 368 (622)
.-..||..+....-|.++|+....|
T Consensus 209 ~E~~iL~~L~HpnIv~l~~~~~~~~ 233 (461)
T PHA03211 209 HEARLLRRLSHPAVLALLDVRVVGG 233 (461)
T ss_pred HHHHHHHHCCCCCCCcEEEEEEECC
Confidence 3456777777777888888765433
No 116
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=20.20 E-value=1.3e+03 Score=27.54 Aligned_cols=18 Identities=17% Similarity=0.261 Sum_probs=14.0
Q ss_pred CCCCCccccccCCCCCcc
Q 006986 141 SNLPPACDAWQNNASDFG 158 (622)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~ 158 (622)
++.++.|--|+.+.-|+-
T Consensus 376 ~~~~~~q~p~~g~epp~~ 393 (757)
T KOG4368|consen 376 WNSQHEQPPWGGGEPPFR 393 (757)
T ss_pred cccccccCcccCCCCchh
Confidence 577899999999973333
Done!