Your job contains 1 sequence.
>006987
MAMILPMPAALQILMVPLLNQLLWHRGLRLILLWLLVILPFLLSTDGTSSAAGKSGSLSL
DALAKAKKALQMQKELSEKLKKIATLSKGSSSDGSGKVQGPAATASDAAAAAAAASVQPP
TSSVPAFPGLANITNIEAVKRAQELAAKMGFRQDPEFAPIINCFPGQPPVDAAVPQKPTK
APVLRVDALGREIDEHGNVVNRTKPSNLSTLKVNINKQKKDAFQILKPELEVDPNVNPHF
DPRMGINKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGAKERQAKQAQLAKAKG
GTDINPNLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREKIT
IYVEHPRPIEPPAEPAPPPPQPLKLTKKEQKKLRTQRRLAREKDRQEMIRQGLIEPPKPK
VKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTPAERREKKERKLFD
DPSSVETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSIKRY
GKLMLRRIDWAKAVKEEDEDEDETTDKPVNKCVLVWQGNVARPSFNRFFVHECMTEAAAK
KVFADAGVAHYWDLAVNFNDEI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 006987
(622 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2010519 - symbol:AT1G28060 "AT1G28060" species... 859 3.8e-168 2
TAIR|locus:2082003 - symbol:AT3G55930 "AT3G55930" species... 740 3.5e-86 2
UNIPROTKB|H9L3J2 - symbol:RPRD2 "Uncharacterized protein"... 624 5.5e-61 1
UNIPROTKB|F2Z4C4 - symbol:PRPF3 "U4/U6 small nuclear ribo... 616 3.9e-60 1
UNIPROTKB|Q2KIA6 - symbol:PRPF3 "U4/U6 small nuclear ribo... 616 3.9e-60 1
UNIPROTKB|E2R4I0 - symbol:PRPF3 "Uncharacterized protein"... 616 3.9e-60 1
UNIPROTKB|E7EVD1 - symbol:PRPF3 "U4/U6 small nuclear ribo... 616 3.9e-60 1
UNIPROTKB|O43395 - symbol:PRPF3 "U4/U6 small nuclear ribo... 616 3.9e-60 1
UNIPROTKB|I3LJQ7 - symbol:PRPF3 "Uncharacterized protein"... 616 3.9e-60 1
RGD|1310555 - symbol:Prpf3 "PRP3 pre-mRNA processing fact... 615 5.0e-60 1
UNIPROTKB|Q5ZJ85 - symbol:PRPF3 "U4/U6 small nuclear ribo... 614 6.4e-60 1
MGI|MGI:1918017 - symbol:Prpf3 "PRP3 pre-mRNA processing ... 614 6.4e-60 1
UNIPROTKB|H9KYU5 - symbol:RPRD2 "Uncharacterized protein"... 608 2.7e-59 1
FB|FBgn0036915 - symbol:Prp3 "Precursor RNA processing 3"... 438 1.3e-55 2
ZFIN|ZDB-GENE-040823-3 - symbol:prpf3 "PRP3 pre-mRNA proc... 565 9.9e-55 1
UNIPROTKB|J9P3I5 - symbol:PRPF3 "Uncharacterized protein"... 517 1.2e-49 1
WB|WBGene00010844 - symbol:prp-3 species:6239 "Caenorhabd... 494 3.3e-47 1
DICTYBASE|DDB_G0274213 - symbol:prpf3 "pre-mRNA processin... 375 1.4e-40 2
CGD|CAL0003600 - symbol:orf19.910 species:5476 "Candida a... 356 3.6e-40 2
UNIPROTKB|Q5AH86 - symbol:PRP3 "Putative uncharacterized ... 356 3.6e-40 2
POMBASE|SPAC29E6.02 - symbol:prp3 "U4/U6 x U5 tri-snRNP c... 402 1.9e-37 1
UNIPROTKB|I3LQS3 - symbol:PRPF3 "Uncharacterized protein"... 403 4.1e-37 1
UNIPROTKB|G4NBX8 - symbol:MGG_01157 "U4/U6 small nuclear ... 360 5.2e-33 1
TAIR|locus:2103585 - symbol:AT3G56790 "AT3G56790" species... 154 6.6e-25 3
SGD|S000002881 - symbol:PRP3 "Splicing factor" species:49... 234 8.5e-17 1
UNIPROTKB|B4DSY9 - symbol:PRPF3 "U4/U6 small nuclear ribo... 182 9.0e-12 1
>TAIR|locus:2010519 [details] [associations]
symbol:AT1G28060 "AT1G28060" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR027104 EMBL:CP002684 EMBL:AC069471
KO:K12843 InterPro:IPR010541 InterPro:IPR013881 PANTHER:PTHR14212
Pfam:PF06544 Pfam:PF08572 EMBL:AY126993 IPI:IPI00516742 PIR:C86406
RefSeq:NP_174127.1 UniGene:At.27810 PRIDE:Q9C7E7
EnsemblPlants:AT1G28060.1 GeneID:839699 KEGG:ath:AT1G28060
TAIR:At1g28060 InParanoid:Q9C7E7 OMA:EMNAREN PhylomeDB:Q9C7E7
ProtClustDB:CLSN2914655 Genevestigator:Q9C7E7 Uniprot:Q9C7E7
Length = 786
Score = 859 (307.4 bits), Expect = 3.8e-168, Sum P(2) = 3.8e-168
Identities = 162/224 (72%), Positives = 193/224 (86%)
Query: 398 RLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHI 457
RLA+EK++QEMIRQGL+EPPK KVKMSNLMKVLGSEATQDPT+LEKEIR+AAAEREQAH
Sbjct: 563 RLAKEKEKQEMIRQGLLEPPKAKVKMSNLMKVLGSEATQDPTKLEKEIRTAAAEREQAHT 622
Query: 458 DRNIARKLTPAERREKKERKLFDDPSSVETIVSVYKINDLSHPKTRFKVDVNAHENRLTG 517
DRN ARKLTPAE+REKKERKLFDDP++VETIVSVYKI LSHPKTRFKV++NA ENRLTG
Sbjct: 623 DRNAARKLTPAEKREKKERKLFDDPTTVETIVSVYKIKKLSHPKTRFKVEMNARENRLTG 682
Query: 518 CAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAVKXXXXXXXXXXXKPVNKCVLVWQ 577
C+V+ + ++VVVVEG SK+IKRYGKLM++RI+W +A + NKC LVWQ
Sbjct: 683 CSVMTDEMSVVVVEGKSKAIKRYGKLMMKRINWEEAERKEGNEDEEEEVNGGNKCWLVWQ 742
Query: 578 GNVARPSFNRFFVHECMTEAAAKKVFADAGVAHYWDLAVNFNDE 621
G++ +PSF+RF VHEC+TE+ AKKVF DAGV HYWDLAVN++D+
Sbjct: 743 GSIGKPSFHRFHVHECVTESTAKKVFMDAGVVHYWDLAVNYSDD 786
Score = 798 (286.0 bits), Expect = 3.8e-168, Sum P(2) = 3.8e-168
Identities = 161/295 (54%), Positives = 191/295 (64%)
Query: 71 QMQKELSEKLKKIATLXXXXXXXXXXXVQGXXXXXXXXXXXXXXXXXXXXXXXXXXFPGL 130
Q+QK L+++LK + L G
Sbjct: 239 QLQKGLADRLKNLPLLKKATKPTSEGSPH-TRVPPSTTTPAVSTGTSFASTLPHTGLAGF 297
Query: 131 ANITNIEAVKRAQELAAKMGFRQDPEFAPIINCFPGQPPVDAAVPQKPTKAPVLRVDALG 190
+I NIEAVKRAQELAA MGF QD EFAP+IN FPGQ P D V Q+P K PVLRVDALG
Sbjct: 298 GSIANIEAVKRAQELAANMGFHQDREFAPVINLFPGQAPSDMTVAQRPEKPPVLRVDALG 357
Query: 191 REIDEHGNVVNRTKPSNLSTLKVNINKQKKDAFQILKPELEVDPNVNPHFDPRMGINKSK 250
REIDEHGNV++ TKPSNLSTLKVNINK+KKDAFQILKP+LE D NP+FD RMGI++ K
Sbjct: 358 REIDEHGNVISVTKPSNLSTLKVNINKKKKDAFQILKPQLEADLKENPYFDTRMGIDEKK 417
Query: 251 LLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGXXXXXXXXXXXXXXXGGTDINPNLIE 310
+LRPKRM+FQFVEEGKW+++AE L+ KS FGEA DINPNLIE
Sbjct: 418 ILRPKRMSFQFVEEGKWTRDAENLKFKSHFGEA--KAKELKVKQAQLAKANDDINPNLIE 475
Query: 311 VAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREKITIYVEH 365
V+ERV KEKPK+PIP++EWWDA +L G Y +I+D E LK EK+T Y+EH
Sbjct: 476 VSERVPRKEKPKEPIPDVEWWDANVLTNGEYGEITDGTITESHLKIEKLTHYIEH 530
>TAIR|locus:2082003 [details] [associations]
symbol:AT3G55930 "AT3G55930" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR027104 EMBL:CP002686 EMBL:AL163832
KO:K12843 InterPro:IPR010541 InterPro:IPR013881 PANTHER:PTHR14212
Pfam:PF06544 Pfam:PF08572 HOGENOM:HOG000152995 IPI:IPI00530863
PIR:T49205 RefSeq:NP_191152.1 UniGene:At.53945 PRIDE:Q9LY52
EnsemblPlants:AT3G55930.1 GeneID:824759 KEGG:ath:AT3G55930
TAIR:At3g55930 InParanoid:Q9LY52 PhylomeDB:Q9LY52
ArrayExpress:Q9LY52 Genevestigator:Q9LY52 Uniprot:Q9LY52
Length = 437
Score = 740 (265.6 bits), Expect = 3.5e-86, Sum P(2) = 3.5e-86
Identities = 159/299 (53%), Positives = 200/299 (66%)
Query: 329 EWWDAPLLLTGSYADISDDVTI-------EDKLKREKITIYVEHXXXXXXXXXXXXXXXX 381
EWWDA +L + ++S D I E+ L + ++EH
Sbjct: 144 EWWDAKILTDDTINELSCDPNILIMDTITENHLNMKVFNCHIEHPFPIEPPAEAASPPPQ 203
Query: 382 XXXXXXXXXXXXXXXXRLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRL 441
R+A+E +++EMI QG +EP K KVKMSNLMKV SEATQ+PT+L
Sbjct: 204 PLKMTKEERKKLRTLRRVAKEMEKREMISQGRVEPQKSKVKMSNLMKVRASEATQNPTKL 263
Query: 442 EKEIRSAAAEREQAHIDRNIARKLTPAERREKKERKLFDDPSSV-ETIVSVYKIND-LSH 499
EKEIR+ AAEREQAH+DRN+ARKLTPAE+REKKERKLF DP++V ETIVSVYKIN LS
Sbjct: 264 EKEIRTEAAEREQAHMDRNVARKLTPAEKREKKERKLFGDPTTVVETIVSVYKINKKLSD 323
Query: 500 PKTRFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAVKXXXX 559
PKTRFKV +NA +N LTG +V+ +G++VVVVEG K+I RY KLML+RI+W +A K
Sbjct: 324 PKTRFKVRMNAKQNILTGFSVMMDGMSVVVVEGKRKAINRYEKLMLKRINWEEAEKKEDE 383
Query: 560 XXXXXXXKPVNKCVLVWQGNVARPSFNRFFVHECMTEAAAKKVFADAGVAHYWDLAVNF 618
NKC LVWQG+V +PSF+RF V EC+T++ AKKVF DAGVAHYWDLA+N+
Sbjct: 384 EENGG-----NKCCLVWQGSVEKPSFHRFHVQECLTKSDAKKVFNDAGVAHYWDLALNY 437
Score = 141 (54.7 bits), Expect = 3.5e-86, Sum P(2) = 3.5e-86
Identities = 30/39 (76%), Positives = 32/39 (82%)
Query: 177 KPTKAPVLRVDALGREIDEHGNVVNRTKPSNLSTLKVNI 215
K TK VLRVDALGREIDEHGNV++ TKP N STL VNI
Sbjct: 91 KQTKGFVLRVDALGREIDEHGNVISVTKPINHSTLMVNI 129
Score = 37 (18.1 bits), Expect = 3.2e-75, Sum P(2) = 3.2e-75
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 136 IEAVKRAQELAAKM--GF 151
I AVKR Q+LA K GF
Sbjct: 79 IVAVKRFQDLAHKQTKGF 96
>UNIPROTKB|H9L3J2 [details] [associations]
symbol:RPRD2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IEA]
InterPro:IPR002483 InterPro:IPR027104 Pfam:PF01480 PROSITE:PS51025
SMART:SM00311 GO:GO:0006397 Gene3D:1.20.1390.10
GeneTree:ENSGT00400000022016 InterPro:IPR010541 InterPro:IPR013881
PANTHER:PTHR14212 Pfam:PF06544 Pfam:PF08572 EMBL:AADN02044034
EMBL:AADN02015890 EMBL:AADN02015891 EMBL:AADN02015892
EMBL:AADN02015893 EMBL:AADN02015894 EMBL:AADN02044035
EMBL:AADN02044036 EMBL:AADN02044037 EMBL:AADN02044038
EMBL:AADN02044039 EMBL:AADN02044040 EMBL:AADN02044041
EMBL:AADN02044042 EMBL:AADN02058745 EMBL:AADN02058746
EMBL:AADN02058747 EMBL:AADN02058748 Ensembl:ENSGALT00000040616
Uniprot:H9L3J2
Length = 684
Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
Identities = 157/444 (35%), Positives = 228/444 (51%)
Query: 179 TKAPVLRVDALGREIDEHGNVVNRTKPSNLSTLKVNINKQKKDAF-QILKPELEVDPNVN 237
TK L +D GR +D G + T + TLK NI K++ F Q LK + D N
Sbjct: 251 TKPTPLILDEQGRTVDATGKEIELTH--RMPTLKANIRAVKREQFKQQLKEKPSEDMESN 308
Query: 238 PHFDPRMGINKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGXXXXXXXXXXXXX 297
+FDPR+ I ++ R KR TF+F E+GK+ K A+ LR K+Q +
Sbjct: 309 TYFDPRVSITPAQ--RQKR-TFKFHEKGKFEKIAQRLRTKAQLEKLQAEISQAARKT--- 362
Query: 298 XXGGTDINPNLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKRE 357
G + L + + KE + IPEIEWWD+ ++ G D+ T K +
Sbjct: 363 ---GIHTSTKLALITPK---KELKEGEIPEIEWWDSYIIPNG--LDLKGG-TSSKKDEYF 413
Query: 358 KITIYVEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLAREKDRQEMIRQGLIEPP 417
IT VEH R +K+ QE +R GL+ PP
Sbjct: 414 GITNLVEHPAQLNPPVDSDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLMPPP 473
Query: 418 KPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTPAERREKKERK 477
+PKV++SNLM+VLG+EA QDPT++E +R+ A+R++AH + N ARKLT +R+ KK +K
Sbjct: 474 EPKVRISNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKAKKIKK 533
Query: 478 LFDDPSSVETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSI 537
L +D S ++VY++ +LS+P +FK++ NA + LTG V+ + +NVVVVEGG K+
Sbjct: 534 LKEDVSQ-GVHIAVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQ 592
Query: 538 KRYGKLMLRRIDWAKAVKXXXXX----XXXXXXKPVNKCVLVWQGNVARPSFNRFFVHEC 593
K++ +LML RI W + K NKC LVW+G SF +C
Sbjct: 593 KKFKRLMLHRIKWDEQTSNTKGEDDDESDEESVKKTNKCSLVWEGTAKDRSFGEMKFKQC 652
Query: 594 MTEAAAKKVFADAGVAHYWDLAVN 617
TE A++ F G HYWDLA++
Sbjct: 653 PTENMAREHFKKHGAEHYWDLALS 676
>UNIPROTKB|F2Z4C4 [details] [associations]
symbol:PRPF3 "U4/U6 small nuclear ribonucleoprotein Prp3"
species:9913 "Bos taurus" [GO:0015030 "Cajal body" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR002483 InterPro:IPR027104
Pfam:PF01480 PROSITE:PS51025 SMART:SM00311 GO:GO:0005737
GO:GO:0006397 GO:GO:0015030 Gene3D:1.20.1390.10
GeneTree:ENSGT00390000011497 InterPro:IPR010541 InterPro:IPR013881
PANTHER:PTHR14212 Pfam:PF06544 Pfam:PF08572 IPI:IPI00695761
UniGene:Bt.60840 OMA:VEANANQ EMBL:DAAA02007262
ProteinModelPortal:F2Z4C4 SMR:F2Z4C4 PRIDE:F2Z4C4
Ensembl:ENSBTAT00000018533 Uniprot:F2Z4C4
Length = 683
Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
Identities = 160/438 (36%), Positives = 229/438 (52%)
Query: 193 IDEHGNVVNRT-KPSNLS----TLKVNINKQKKDAF-QILKPELEVDPNVNPHFDPRMGI 246
+DE G V+ T K L+ TLK NI K++ F Q LK + D N FDPR+ I
Sbjct: 258 LDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEKPSEDMESNTFFDPRVSI 317
Query: 247 NKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGXXXXXXXXXXXXXXXGGTDINP 306
S+ R +R TF+F ++GK+ K A+ LR K+Q + G +
Sbjct: 318 APSQ--RQRR-TFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAARKT------GIHTST 368
Query: 307 NLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREK---ITIYV 363
L +A + KE + IPEIEWWD+ ++ G D+T E+ KRE IT V
Sbjct: 369 RLALIAPK---KELKEGDIPEIEWWDSYIIPNGF------DLT-EENPKREDYFGITNLV 418
Query: 364 EHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLAREKDRQEMIRQGLIEPPKPKVKM 423
EH R +K+ QE +R GL+ PP+PKV++
Sbjct: 419 EHPAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRI 478
Query: 424 SNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTPAERREKKERKLFDDPS 483
SNLM+VLG+EA QDPT++E +R+ A+R++AH + N ARKLT +R+ KK +KL +D S
Sbjct: 479 SNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDIS 538
Query: 484 SVETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKL 543
+SVY++ +LS+P +FK++ NA + LTG V+ + +NVVVVEGG K+ K++ +L
Sbjct: 539 Q-GVHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQKKFKRL 597
Query: 544 MLRRIDWAKAVKXXXXX----XXXXXXKPVNKCVLVWQGNVARPSFNRFFVHECMTEAAA 599
ML RI W + K NKCVLVW+G SF +C TE A
Sbjct: 598 MLHRIKWDEQTSNTKGDDDEESDEEAVKKTNKCVLVWEGTAKDRSFGEMKFKQCPTENMA 657
Query: 600 KKVFADAGVAHYWDLAVN 617
++ F G HYWDLA++
Sbjct: 658 REHFKKHGAEHYWDLALS 675
>UNIPROTKB|Q2KIA6 [details] [associations]
symbol:PRPF3 "U4/U6 small nuclear ribonucleoprotein Prp3"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0046540 "U4/U6
x U5 tri-snRNP complex" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA] InterPro:IPR002483
InterPro:IPR027104 Pfam:PF01480 PROSITE:PS51025 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 Gene3D:1.20.1390.10
eggNOG:NOG268901 HOGENOM:HOG000205412 KO:K12843 InterPro:IPR010541
InterPro:IPR013881 PANTHER:PTHR14212 Pfam:PF06544 Pfam:PF08572
EMBL:BC112709 IPI:IPI00695761 RefSeq:NP_001039516.1
UniGene:Bt.60840 ProteinModelPortal:Q2KIA6 SMR:Q2KIA6 STRING:Q2KIA6
PRIDE:Q2KIA6 GeneID:510322 KEGG:bta:510322 CTD:9129
HOVERGEN:HBG053699 InParanoid:Q2KIA6 OrthoDB:EOG4G7BXZ
NextBio:20869379 Uniprot:Q2KIA6
Length = 683
Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
Identities = 160/438 (36%), Positives = 229/438 (52%)
Query: 193 IDEHGNVVNRT-KPSNLS----TLKVNINKQKKDAF-QILKPELEVDPNVNPHFDPRMGI 246
+DE G V+ T K L+ TLK NI K++ F Q LK + D N FDPR+ I
Sbjct: 258 LDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEKPSEDMESNTFFDPRVSI 317
Query: 247 NKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGXXXXXXXXXXXXXXXGGTDINP 306
S+ R +R TF+F ++GK+ K A+ LR K+Q + G +
Sbjct: 318 APSQ--RQRR-TFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAARKT------GIHTST 368
Query: 307 NLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREK---ITIYV 363
L +A + KE + IPEIEWWD+ ++ G D+T E+ KRE IT V
Sbjct: 369 RLALIAPK---KELKEGDIPEIEWWDSYIIPNGF------DLT-EENPKREDYFGITNLV 418
Query: 364 EHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLAREKDRQEMIRQGLIEPPKPKVKM 423
EH R +K+ QE +R GL+ PP+PKV++
Sbjct: 419 EHPAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRI 478
Query: 424 SNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTPAERREKKERKLFDDPS 483
SNLM+VLG+EA QDPT++E +R+ A+R++AH + N ARKLT +R+ KK +KL +D S
Sbjct: 479 SNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDIS 538
Query: 484 SVETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKL 543
+SVY++ +LS+P +FK++ NA + LTG V+ + +NVVVVEGG K+ K++ +L
Sbjct: 539 Q-GVHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQKKFKRL 597
Query: 544 MLRRIDWAKAVKXXXXX----XXXXXXKPVNKCVLVWQGNVARPSFNRFFVHECMTEAAA 599
ML RI W + K NKCVLVW+G SF +C TE A
Sbjct: 598 MLHRIKWDEQTSNTKGDDDEESDEEAVKKTNKCVLVWEGTAKDRSFGEMKFKQCPTENMA 657
Query: 600 KKVFADAGVAHYWDLAVN 617
++ F G HYWDLA++
Sbjct: 658 REHFKKHGAEHYWDLALS 675
>UNIPROTKB|E2R4I0 [details] [associations]
symbol:PRPF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0015030 "Cajal body" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR002483 InterPro:IPR027104
Pfam:PF01480 PROSITE:PS51025 SMART:SM00311 GO:GO:0005737
GO:GO:0006397 GO:GO:0015030 Gene3D:1.20.1390.10
GeneTree:ENSGT00390000011497 KO:K12843 InterPro:IPR010541
InterPro:IPR013881 PANTHER:PTHR14212 Pfam:PF06544 Pfam:PF08572
OMA:VEANANQ EMBL:AAEX03011047 RefSeq:XP_003639679.1
ProteinModelPortal:E2R4I0 SMR:E2R4I0 PRIDE:E2R4I0
Ensembl:ENSCAFT00000018778 GeneID:100855927 KEGG:cfa:100855927
NextBio:20851604 Uniprot:E2R4I0
Length = 683
Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
Identities = 160/438 (36%), Positives = 229/438 (52%)
Query: 193 IDEHGNVVNRT-KPSNLS----TLKVNINKQKKDAF-QILKPELEVDPNVNPHFDPRMGI 246
+DE G V+ T K L+ TLK NI K++ F Q LK + D N FDPR+ I
Sbjct: 258 LDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEKPSEDMESNTFFDPRVSI 317
Query: 247 NKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGXXXXXXXXXXXXXXXGGTDINP 306
S+ R +R TF+F ++GK+ K A+ LR K+Q + G +
Sbjct: 318 APSQ--RQRR-TFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAARKT------GIHTST 368
Query: 307 NLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREK---ITIYV 363
L +A + KE + IPEIEWWD+ ++ G D+T E+ KRE IT V
Sbjct: 369 RLALIAPK---KELKEGDIPEIEWWDSYIIPNGF------DLT-EENPKREDYFGITNLV 418
Query: 364 EHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLAREKDRQEMIRQGLIEPPKPKVKM 423
EH R +K+ QE +R GL+ PP+PKV++
Sbjct: 419 EHPAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRI 478
Query: 424 SNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTPAERREKKERKLFDDPS 483
SNLM+VLG+EA QDPT++E +R+ A+R++AH + N ARKLT +R+ KK +KL +D S
Sbjct: 479 SNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDIS 538
Query: 484 SVETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKL 543
+SVY++ +LS+P +FK++ NA + LTG V+ + +NVVVVEGG K+ K++ +L
Sbjct: 539 Q-GVHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQKKFKRL 597
Query: 544 MLRRIDWAKAVKXXXXX----XXXXXXKPVNKCVLVWQGNVARPSFNRFFVHECMTEAAA 599
ML RI W + K NKCVLVW+G SF +C TE A
Sbjct: 598 MLHRIKWDEQTSNTKGDDDEESDEEAVKKTNKCVLVWEGTAKDRSFGEMKFKQCPTENMA 657
Query: 600 KKVFADAGVAHYWDLAVN 617
++ F G HYWDLA++
Sbjct: 658 REHFKKHGAEHYWDLALS 675
>UNIPROTKB|E7EVD1 [details] [associations]
symbol:PRPF3 "U4/U6 small nuclear ribonucleoprotein Prp3"
species:9606 "Homo sapiens" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR002483 InterPro:IPR027104 Pfam:PF01480
PROSITE:PS51025 SMART:SM00311 GO:GO:0005634 GO:GO:0005737
GO:GO:0006397 Gene3D:1.20.1390.10 InterPro:IPR010541
InterPro:IPR013881 PANTHER:PTHR14212 Pfam:PF06544 Pfam:PF08572
EMBL:AL611942 HGNC:HGNC:17348 IPI:IPI00909797
ProteinModelPortal:E7EVD1 SMR:E7EVD1 Ensembl:ENST00000414970
UCSC:uc010pcb.2 ArrayExpress:E7EVD1 Bgee:E7EVD1 Uniprot:E7EVD1
Length = 634
Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
Identities = 160/438 (36%), Positives = 229/438 (52%)
Query: 193 IDEHGNVVNRT-KPSNLS----TLKVNINKQKKDAF-QILKPELEVDPNVNPHFDPRMGI 246
+DE G V+ T K L+ TLK NI K++ F Q LK + D N FDPR+ I
Sbjct: 209 LDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEKPSEDMESNTFFDPRVSI 268
Query: 247 NKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGXXXXXXXXXXXXXXXGGTDINP 306
S+ R +R TF+F ++GK+ K A+ LR K+Q + G +
Sbjct: 269 APSQ--RQRR-TFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAARKT------GIHTST 319
Query: 307 NLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREK---ITIYV 363
L +A + KE + IPEIEWWD+ ++ G D+T E+ KRE IT V
Sbjct: 320 RLALIAPK---KELKEGDIPEIEWWDSYIIPNGF------DLT-EENPKREDYFGITNLV 369
Query: 364 EHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLAREKDRQEMIRQGLIEPPKPKVKM 423
EH R +K+ QE +R GL+ PP+PKV++
Sbjct: 370 EHPAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRI 429
Query: 424 SNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTPAERREKKERKLFDDPS 483
SNLM+VLG+EA QDPT++E +R+ A+R++AH + N ARKLT +R+ KK +KL +D S
Sbjct: 430 SNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDIS 489
Query: 484 SVETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKL 543
+SVY++ +LS+P +FK++ NA + LTG V+ + +NVVVVEGG K+ K++ +L
Sbjct: 490 Q-GVHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQKKFKRL 548
Query: 544 MLRRIDWAKAVKXXXXX----XXXXXXKPVNKCVLVWQGNVARPSFNRFFVHECMTEAAA 599
ML RI W + K NKCVLVW+G SF +C TE A
Sbjct: 549 MLHRIKWDEQTSNTKGDDDEESDEEAVKKTNKCVLVWEGTAKDRSFGEMKFKQCPTENMA 608
Query: 600 KKVFADAGVAHYWDLAVN 617
++ F G HYWDLA++
Sbjct: 609 REHFKKHGAEHYWDLALS 626
>UNIPROTKB|O43395 [details] [associations]
symbol:PRPF3 "U4/U6 small nuclear ribonucleoprotein Prp3"
species:9606 "Homo sapiens" [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=NAS] [GO:0005681 "spliceosomal complex" evidence=NAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0015030 "Cajal body" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR002483
InterPro:IPR027104 Pfam:PF01480 PROSITE:PS51025 SMART:SM00311
GO:GO:0005737 GO:GO:0016607 GO:GO:0005681 Orphanet:791
GO:GO:0015030 EMBL:CH471121 GO:GO:0000398 Gene3D:1.20.1390.10
eggNOG:NOG268901 HOGENOM:HOG000205412 KO:K12843 InterPro:IPR010541
InterPro:IPR013881 PANTHER:PTHR14212 Pfam:PF06544 Pfam:PF08572
CTD:9129 HOVERGEN:HBG053699 OrthoDB:EOG4G7BXZ EMBL:AF001947
EMBL:AF016370 EMBL:AL611942 EMBL:BC000184 EMBL:BC001954
IPI:IPI00005861 PIR:T50839 PIR:T50840 RefSeq:NP_004689.1
UniGene:Hs.11776 PDB:1X4Q PDBsum:1X4Q ProteinModelPortal:O43395
SMR:O43395 DIP:DIP-34508N IntAct:O43395 MINT:MINT-1445186
STRING:O43395 PhosphoSite:O43395 PaxDb:O43395 PRIDE:O43395
DNASU:9129 Ensembl:ENST00000324862 Ensembl:ENST00000578639
GeneID:9129 KEGG:hsa:9129 UCSC:uc001eum.4 GeneCards:GC01P150293
HGNC:HGNC:17348 HPA:HPA027226 MIM:601414 MIM:607301
neXtProt:NX_O43395 PharmGKB:PA134892509 InParanoid:O43395
OMA:VEANANQ PhylomeDB:O43395 EvolutionaryTrace:O43395
GenomeRNAi:9129 NextBio:34221 PMAP-CutDB:O43395 ArrayExpress:O43395
Bgee:O43395 CleanEx:HS_PRPF3 Genevestigator:O43395
GermOnline:ENSG00000117360 Uniprot:O43395
Length = 683
Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
Identities = 160/438 (36%), Positives = 229/438 (52%)
Query: 193 IDEHGNVVNRT-KPSNLS----TLKVNINKQKKDAF-QILKPELEVDPNVNPHFDPRMGI 246
+DE G V+ T K L+ TLK NI K++ F Q LK + D N FDPR+ I
Sbjct: 258 LDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEKPSEDMESNTFFDPRVSI 317
Query: 247 NKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGXXXXXXXXXXXXXXXGGTDINP 306
S+ R +R TF+F ++GK+ K A+ LR K+Q + G +
Sbjct: 318 APSQ--RQRR-TFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAARKT------GIHTST 368
Query: 307 NLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREK---ITIYV 363
L +A + KE + IPEIEWWD+ ++ G D+T E+ KRE IT V
Sbjct: 369 RLALIAPK---KELKEGDIPEIEWWDSYIIPNGF------DLT-EENPKREDYFGITNLV 418
Query: 364 EHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLAREKDRQEMIRQGLIEPPKPKVKM 423
EH R +K+ QE +R GL+ PP+PKV++
Sbjct: 419 EHPAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRI 478
Query: 424 SNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTPAERREKKERKLFDDPS 483
SNLM+VLG+EA QDPT++E +R+ A+R++AH + N ARKLT +R+ KK +KL +D S
Sbjct: 479 SNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDIS 538
Query: 484 SVETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKL 543
+SVY++ +LS+P +FK++ NA + LTG V+ + +NVVVVEGG K+ K++ +L
Sbjct: 539 Q-GVHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQKKFKRL 597
Query: 544 MLRRIDWAKAVKXXXXX----XXXXXXKPVNKCVLVWQGNVARPSFNRFFVHECMTEAAA 599
ML RI W + K NKCVLVW+G SF +C TE A
Sbjct: 598 MLHRIKWDEQTSNTKGDDDEESDEEAVKKTNKCVLVWEGTAKDRSFGEMKFKQCPTENMA 657
Query: 600 KKVFADAGVAHYWDLAVN 617
++ F G HYWDLA++
Sbjct: 658 REHFKKHGAEHYWDLALS 675
>UNIPROTKB|I3LJQ7 [details] [associations]
symbol:PRPF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015030 "Cajal body" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR002483 InterPro:IPR027104 Pfam:PF01480
PROSITE:PS51025 SMART:SM00311 GO:GO:0006397 Gene3D:1.20.1390.10
GeneTree:ENSGT00390000011497 InterPro:IPR010541 InterPro:IPR013881
PANTHER:PTHR14212 Pfam:PF06544 Pfam:PF08572 OMA:VEANANQ
EMBL:FP312851 ProteinModelPortal:I3LJQ7 SMR:I3LJQ7 PRIDE:I3LJQ7
Ensembl:ENSSSCT00000030305 Uniprot:I3LJQ7
Length = 683
Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
Identities = 160/438 (36%), Positives = 229/438 (52%)
Query: 193 IDEHGNVVNRT-KPSNLS----TLKVNINKQKKDAF-QILKPELEVDPNVNPHFDPRMGI 246
+DE G V+ T K L+ TLK NI K++ F Q LK + D N FDPR+ I
Sbjct: 258 LDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEKPSEDMESNTFFDPRVSI 317
Query: 247 NKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGXXXXXXXXXXXXXXXGGTDINP 306
S+ R +R TF+F ++GK+ K A+ LR K+Q + G +
Sbjct: 318 APSQ--RQRR-TFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAARKT------GIHTST 368
Query: 307 NLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREK---ITIYV 363
L +A + KE + IPEIEWWD+ ++ G D+T E+ KRE IT V
Sbjct: 369 RLALIAPK---KELKEGDIPEIEWWDSYIIPNGF------DLT-EENPKREDYFGITNLV 418
Query: 364 EHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLAREKDRQEMIRQGLIEPPKPKVKM 423
EH R +K+ QE +R GL+ PP+PKV++
Sbjct: 419 EHPAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRI 478
Query: 424 SNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTPAERREKKERKLFDDPS 483
SNLM+VLG+EA QDPT++E +R+ A+R++AH + N ARKLT +R+ KK +KL +D S
Sbjct: 479 SNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDIS 538
Query: 484 SVETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKL 543
+SVY++ +LS+P +FK++ NA + LTG V+ + +NVVVVEGG K+ K++ +L
Sbjct: 539 Q-GVHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQKKFKRL 597
Query: 544 MLRRIDWAKAVKXXXXX----XXXXXXKPVNKCVLVWQGNVARPSFNRFFVHECMTEAAA 599
ML RI W + K NKCVLVW+G SF +C TE A
Sbjct: 598 MLHRIKWDEQTSNTKGDDDEESDEEAVKKTNKCVLVWEGTAKDRSFGEMKFKQCPTENMA 657
Query: 600 KKVFADAGVAHYWDLAVN 617
++ F G HYWDLA++
Sbjct: 658 REHFKKHGAEHYWDLALS 675
>RGD|1310555 [details] [associations]
symbol:Prpf3 "PRP3 pre-mRNA processing factor 3 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0015030 "Cajal body" evidence=ISO] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR002483 InterPro:IPR027104
Pfam:PF01480 PROSITE:PS51025 SMART:SM00311 RGD:1310555
GO:GO:0005737 GO:GO:0006397 GO:GO:0015030 Gene3D:1.20.1390.10
InterPro:IPR010541 InterPro:IPR013881 PANTHER:PTHR14212
Pfam:PF06544 Pfam:PF08572 OrthoDB:EOG4G7BXZ OMA:VEANANQ
IPI:IPI00393501 Ensembl:ENSRNOT00000035455 UCSC:RGD:1310555
ArrayExpress:D3ZWN7 Uniprot:D3ZWN7
Length = 683
Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
Identities = 160/438 (36%), Positives = 228/438 (52%)
Query: 193 IDEHGNVVNRT-KPSNLS----TLKVNINKQKKDAF-QILKPELEVDPNVNPHFDPRMGI 246
+DE G V+ T K L+ TLK NI K++ F Q LK + D N FDPR+ I
Sbjct: 258 LDEQGRTVDATGKEVELTHRMPTLKANIRAVKREQFKQQLKEKPSEDMESNTFFDPRVSI 317
Query: 247 NKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGXXXXXXXXXXXXXXXGGTDINP 306
S+ R +R TF+F ++GK+ K A+ LR K+Q + G +
Sbjct: 318 APSQ--RQRR-TFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAARKT------GIHTST 368
Query: 307 NLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREK---ITIYV 363
L +A + KE + IPEIEWWD+ ++ G D+T E+ KRE IT V
Sbjct: 369 RLALIAPK---KELKEGDIPEIEWWDSYIIPNGF------DLT-EENPKREDYFGITNLV 418
Query: 364 EHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLAREKDRQEMIRQGLIEPPKPKVKM 423
EH R +K+ QE +R GL PP+PKV++
Sbjct: 419 EHPAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLTPPPEPKVRI 478
Query: 424 SNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTPAERREKKERKLFDDPS 483
SNLM+VLG+EA QDPT++E +R+ A+R++AH + N ARKLT +R+ KK +KL +D S
Sbjct: 479 SNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKVKKLKEDIS 538
Query: 484 SVETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKL 543
+SVY++ +LS+P +FK++ NA + LTG V+ + +NVVVVEGG K+ K++ +L
Sbjct: 539 Q-GVHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQKKFKRL 597
Query: 544 MLRRIDWAKAVKXXXXX----XXXXXXKPVNKCVLVWQGNVARPSFNRFFVHECMTEAAA 599
ML RI W + K NKCVLVW+G SF +C TE A
Sbjct: 598 MLHRIKWDEQTSNTKGDDDEESDEEAVKKTNKCVLVWEGTAKDRSFGEMKFKQCPTENMA 657
Query: 600 KKVFADAGVAHYWDLAVN 617
++ F G HYWDLA++
Sbjct: 658 REHFKKHGAEHYWDLALS 675
>UNIPROTKB|Q5ZJ85 [details] [associations]
symbol:PRPF3 "U4/U6 small nuclear ribonucleoprotein Prp3"
species:9031 "Gallus gallus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
InterPro:IPR002483 InterPro:IPR027104 Pfam:PF01480 PROSITE:PS51025
SMART:SM00311 GO:GO:0008380 GO:GO:0016607 GO:GO:0006397
GO:GO:0005681 Gene3D:1.20.1390.10 HOGENOM:HOG000205412 KO:K12843
InterPro:IPR010541 InterPro:IPR013881 PANTHER:PTHR14212
Pfam:PF06544 Pfam:PF08572 CTD:9129 HOVERGEN:HBG053699 EMBL:AJ720549
IPI:IPI00576531 RefSeq:NP_001026561.1 UniGene:Gga.1509 HSSP:O43395
ProteinModelPortal:Q5ZJ85 SMR:Q5ZJ85 GeneID:426667 KEGG:gga:426667
eggNOG:NOG331230 NextBio:20828140 Uniprot:Q5ZJ85
Length = 684
Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
Identities = 156/444 (35%), Positives = 227/444 (51%)
Query: 179 TKAPVLRVDALGREIDEHGNVVNRTKPSNLSTLKVNINKQKKDAF-QILKPELEVDPNVN 237
TK L +D GR +D G + T + TLK NI K++ F Q LK + D N
Sbjct: 251 TKPTPLILDEQGRTVDATGKEIELTH--RMPTLKANIRAVKREQFKQQLKEKPSEDMESN 308
Query: 238 PHFDPRMGINKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGXXXXXXXXXXXXX 297
+FD R+ I ++ R KR TF+F E+GK+ K A+ LR K+Q +
Sbjct: 309 TYFDLRVSITPAQ--RQKR-TFKFHEKGKFEKIAQRLRTKAQLKKLQAEISQAARKT--- 362
Query: 298 XXGGTDINPNLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKRE 357
G + L + + KE + IPEIEWWD+ ++ G D+ T K +
Sbjct: 363 ---GIHTSTKLALITPK---KELKEGEIPEIEWWDSYIIPNG--LDLKGG-TSSKKDEYF 413
Query: 358 KITIYVEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLAREKDRQEMIRQGLIEPP 417
IT VEH R +K+ QE +R GL+ PP
Sbjct: 414 GITNLVEHPAQLNPPVDSDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLMPPP 473
Query: 418 KPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTPAERREKKERK 477
+PKV++SNLM+VLG+EA QDPT++E +R+ A+R++AH + N ARKLT +R+ KK +K
Sbjct: 474 EPKVRISNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKAKKIKK 533
Query: 478 LFDDPSSVETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSI 537
L +D S ++VY++ +LS+P +FK++ NA + LTG V+ + +NVVVVEGG K+
Sbjct: 534 LKEDVSQ-GVHIAVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQ 592
Query: 538 KRYGKLMLRRIDWAKAVKXXXXX----XXXXXXKPVNKCVLVWQGNVARPSFNRFFVHEC 593
K++ +LML RI W + K NKC LVW+G SF +C
Sbjct: 593 KKFKRLMLHRIKWDEQTSNTKGEDDDESDEESVKKTNKCSLVWEGTAKDRSFGEMKFKQC 652
Query: 594 MTEAAAKKVFADAGVAHYWDLAVN 617
TE A++ F G HYWDLA++
Sbjct: 653 PTENMAREHFKKHGAEHYWDLALS 676
>MGI|MGI:1918017 [details] [associations]
symbol:Prpf3 "PRP3 pre-mRNA processing factor 3 homolog
(yeast)" species:10090 "Mus musculus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0015030 "Cajal body" evidence=ISO]
InterPro:IPR002483 InterPro:IPR027104 Pfam:PF01480 PROSITE:PS51025
SMART:SM00311 MGI:MGI:1918017 GO:GO:0005737 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0015030
Gene3D:1.20.1390.10 eggNOG:NOG268901 GeneTree:ENSGT00390000011497
HOGENOM:HOG000205412 KO:K12843 InterPro:IPR010541
InterPro:IPR013881 PANTHER:PTHR14212 Pfam:PF06544 Pfam:PF08572
CTD:9129 HOVERGEN:HBG053699 OrthoDB:EOG4G7BXZ OMA:VEANANQ
EMBL:AK014398 EMBL:AK088194 EMBL:AK167435 EMBL:BC006782
IPI:IPI00331170 RefSeq:NP_081817.2 UniGene:Mm.279872
ProteinModelPortal:Q922U1 SMR:Q922U1 IntAct:Q922U1 STRING:Q922U1
PhosphoSite:Q922U1 PaxDb:Q922U1 PRIDE:Q922U1
Ensembl:ENSMUST00000015892 Ensembl:ENSMUST00000161476 GeneID:70767
KEGG:mmu:70767 UCSC:uc008qlf.1 InParanoid:Q922U1 NextBio:332211
Bgee:Q922U1 CleanEx:MM_PRPF3 Genevestigator:Q922U1
GermOnline:ENSMUSG00000015748 Uniprot:Q922U1
Length = 683
Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
Identities = 160/438 (36%), Positives = 228/438 (52%)
Query: 193 IDEHGNVVNRT-KPSNLS----TLKVNINKQKKDAF-QILKPELEVDPNVNPHFDPRMGI 246
+DE G V+ T K L+ TLK NI K++ F Q LK + D N FDPR+ I
Sbjct: 258 LDEQGRTVDATGKEVELTHRMPTLKANIRAVKREQFKQQLKEKPSEDMESNTFFDPRVSI 317
Query: 247 NKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGXXXXXXXXXXXXXXXGGTDINP 306
S+ R +R TF+F ++GK+ K A+ LR K+Q + G +
Sbjct: 318 APSQ--RQRR-TFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAARKT------GIHTST 368
Query: 307 NLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREK---ITIYV 363
L +A + KE + IPEIEWWD+ ++ G D+T E+ KRE IT V
Sbjct: 369 RLALIAPK---KELKEGDIPEIEWWDSYIIPNGF------DLT-EENPKREDYFGITNLV 418
Query: 364 EHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLAREKDRQEMIRQGLIEPPKPKVKM 423
EH R +K+ QE +R GL PP+PKV++
Sbjct: 419 EHPAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLTPPPEPKVRI 478
Query: 424 SNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTPAERREKKERKLFDDPS 483
SNLM+VLG+EA QDPT++E +R+ A+R++AH + N ARKLT +R+ KK +KL +D S
Sbjct: 479 SNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDIS 538
Query: 484 SVETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKL 543
+SVY++ +LS+P +FK++ NA + LTG V+ + +NVVVVEGG K+ K++ +L
Sbjct: 539 Q-GVHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQKKFKRL 597
Query: 544 MLRRIDWAKAVKXXXXX----XXXXXXKPVNKCVLVWQGNVARPSFNRFFVHECMTEAAA 599
ML RI W + K NKCVLVW+G SF +C TE A
Sbjct: 598 MLHRIKWDEQTSNTKGDDDEESDEEAVKKTNKCVLVWEGTAKDRSFGEMKFKQCPTENMA 657
Query: 600 KKVFADAGVAHYWDLAVN 617
++ F G HYWDLA++
Sbjct: 658 REHFKKHGAEHYWDLALS 675
>UNIPROTKB|H9KYU5 [details] [associations]
symbol:RPRD2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IEA]
InterPro:IPR002483 InterPro:IPR027104 Pfam:PF01480 PROSITE:PS51025
SMART:SM00311 GO:GO:0006397 Gene3D:1.20.1390.10
GeneTree:ENSGT00400000022016 InterPro:IPR010541 InterPro:IPR013881
PANTHER:PTHR14212 Pfam:PF06544 Pfam:PF08572 EMBL:AADN02044034
EMBL:AADN02015890 EMBL:AADN02015891 EMBL:AADN02015892
EMBL:AADN02015893 EMBL:AADN02015894 EMBL:AADN02044035
EMBL:AADN02044036 EMBL:AADN02044037 EMBL:AADN02044038
EMBL:AADN02044039 EMBL:AADN02044040 EMBL:AADN02044041
EMBL:AADN02044042 EMBL:AADN02058745 EMBL:AADN02058746
EMBL:AADN02058747 EMBL:AADN02058748 Ensembl:ENSGALT00000000634
Uniprot:H9KYU5
Length = 683
Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
Identities = 154/435 (35%), Positives = 226/435 (51%)
Query: 193 IDEHGNVVNRT-KPSNLS----TLKVNINKQKKDAF-QILKPELEVDPNVNPHFDPRMGI 246
+DE G V+ T K L+ TLK NI K++ F Q LK + D N +FDPR+ I
Sbjct: 258 LDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEKPSEDMESNTYFDPRVSI 317
Query: 247 NKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGXXXXXXXXXXXXXXXGGTDINP 306
++ R KR TF+F E+GK+ K A+ LR K+Q + G +
Sbjct: 318 TPAQ--RQKR-TFKFHEKGKFEKIAQRLRTKAQLEKLQAEISQAARKT------GIHTST 368
Query: 307 NLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREKITIYVEHX 366
L + + KE + IPEIEWWD+ ++ G D+ + +D+ IT VEH
Sbjct: 369 KLALITPK---KELKEGEIPEIEWWDSYIIPNG--LDLGGTSSKKDEYFG--ITNLVEHP 421
Query: 367 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLAREKDRQEMIRQGLIEPPKPKVKMSNL 426
R +K+ QE +R GL+ PP+PKV++SNL
Sbjct: 422 AQLNPPVDSDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRISNL 481
Query: 427 MKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTPAERREKKERKLFDDPSSVE 486
M+VLG+EA QDPT++E +R+ A+R++AH + N ARKLT +R+ KK +KL +D S
Sbjct: 482 MRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKAKKIKKLKEDVSQ-G 540
Query: 487 TIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKLMLR 546
++VY++ +LS+P +FK++ NA + LTG V+ + +NVVVVEGG K+ K++ +LML
Sbjct: 541 VHIAVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQKKFKRLMLH 600
Query: 547 RIDWAKAVKXXXXX----XXXXXXKPVNKCVLVWQGNVARPSFNRFFVHECMTEAAAKKV 602
RI W + K NKC LVW+G SF +C TE A++
Sbjct: 601 RIKWDEQTSNTKGEDDDESDEESVKKTNKCSLVWEGTAKDRSFGEMKFKQCPTENMAREH 660
Query: 603 FADAGVAHYWDLAVN 617
F G HYWDLA++
Sbjct: 661 FKKHGAEHYWDLALS 675
>FB|FBgn0036915 [details] [associations]
symbol:Prp3 "Precursor RNA processing 3" species:7227
"Drosophila melanogaster" [GO:0005688 "U6 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0005687 "U4 snRNP" evidence=ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IEA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0031935
"regulation of chromatin silencing" evidence=IMP]
InterPro:IPR027104 EMBL:AE014296 GO:GO:0071011 GO:GO:0000398
GO:GO:0030532 GeneTree:ENSGT00390000011497 KO:K12843
InterPro:IPR010541 InterPro:IPR013881 PANTHER:PTHR14212
Pfam:PF06544 Pfam:PF08572 OMA:VEANANQ GO:GO:0031935
UniGene:Dm.13639 GeneID:40172 KEGG:dme:Dmel_CG7757
FlyBase:FBgn0036915 GenomeRNAi:40172 NextBio:817396
RefSeq:NP_649156.1 IntAct:Q9VW52 MINT:MINT-322986 STRING:Q9VW52
PRIDE:Q9VW52 EnsemblMetazoa:FBtr0074891 UCSC:CG7757-RA
InParanoid:Q9VW52 PhylomeDB:Q9VW52 ArrayExpress:Q9VW52 Bgee:Q9VW52
Uniprot:Q9VW52
Length = 598
Score = 438 (159.2 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 97/214 (45%), Positives = 131/214 (61%)
Query: 403 KDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNIA 462
K+ QE IR GL+ PP+PK+++SNLM+VLGSEA QDPT++E+ +R A+R++AH D N A
Sbjct: 378 KEEQEKIRLGLVAPPEPKLRISNLMRVLGSEAVQDPTKMEQHVRDQMAKRQKAHEDANNA 437
Query: 463 RKLTPAERREKKERKLFDDPSSVETIVSVYKINDLSHPKTR-FKVDVNAHENRLTGCAVI 521
RKLT ++ EKK+RKL +D +S VSVY+I DL +++ FKV+ NA + ++TG V+
Sbjct: 438 RKLTSEQKSEKKQRKLRED-TSCGVHVSVYRIRDLQDNQSKKFKVETNAKQLQMTGSVVL 496
Query: 522 CEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAVKXXXXXXXXXXXKPVNKCVLVWQGNVA 581
VVVVEGG K K+Y +LML RI W + P N CVLVW+G
Sbjct: 497 FRDCCVVVVEGGPKQQKKYRRLMLTRIKWEE----DNAKGNDGQDVP-NSCVLVWEGTSQ 551
Query: 582 RPSFNRFFVHECMTEAAAKKVFADAGVAHYWDLA 615
R F E A++ F V HYWDLA
Sbjct: 552 RRHFGEIKFKIFPMEKMAREFFQKHQVEHYWDLA 585
Score = 153 (58.9 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 61/236 (25%), Positives = 105/236 (44%)
Query: 137 EAVKRAQELAAKMGFRQDPEFAPIINCFPGQPPVDAAVPQKPTKAPVLRVDALGREIDEH 196
E ++ EL A++ + A +I AA + P++ +D GR +D+
Sbjct: 123 EKARKIAELQAQIRAKLTGNLASLIQPTAVAAAAAAAAQAQERPKPLI-LDDEGRTVDKS 181
Query: 197 GNVVNRTKPSNLSTLKVNINKQKKDAFQI---LKPELEVDPNVNP----HFDPRMGINKS 249
G +N P+ TLK NI +K++ FQ L E + +FD R+ + +
Sbjct: 182 GRTINI--PTVTPTLKANIRAKKREVFQRQTGLGERSESGTSAQEEAIKYFDDRIALKPT 239
Query: 250 KLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGXXXXXXXXXXXXXXXGGTDINPNLI 309
+R KR T +F E GK+ + AE +R+KSQ G L
Sbjct: 240 --VRTKR-TLRFHEPGKFQQLAERMRMKSQLERLQNEISQIARKT------GISSATKLA 290
Query: 310 EVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREKITIYVEH 365
+A + ++ P D +P +EWWD+ ++LT + DD + + +++ IT +EH
Sbjct: 291 LIAPK---QDMPDD-VPAMEWWDS-VILTQDLETV-DDASGKISIRQTAITNLIEH 340
>ZFIN|ZDB-GENE-040823-3 [details] [associations]
symbol:prpf3 "PRP3 pre-mRNA processing factor 3
homolog (yeast)" species:7955 "Danio rerio" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=IEA] [GO:0060041 "retina development in
camera-type eye" evidence=IMP] InterPro:IPR002483
InterPro:IPR027104 Pfam:PF01480 PROSITE:PS51025
ZFIN:ZDB-GENE-040823-3 GO:GO:0006397 GO:GO:0060041
Gene3D:1.20.1390.10 HOGENOM:HOG000205412 KO:K12843
InterPro:IPR010541 InterPro:IPR013881 PANTHER:PTHR14212
Pfam:PF06544 Pfam:PF08572 CTD:9129 HOVERGEN:HBG053699 EMBL:AY391431
IPI:IPI00494756 RefSeq:NP_991311.1 UniGene:Dr.75242
ProteinModelPortal:Q6TNT6 SMR:Q6TNT6 STRING:Q6TNT6 PRIDE:Q6TNT6
GeneID:403072 KEGG:dre:403072 NextBio:20816866 ArrayExpress:Q6TNT6
Bgee:Q6TNT6 Uniprot:Q6TNT6
Length = 700
Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
Identities = 158/505 (31%), Positives = 253/505 (50%)
Query: 131 ANITN--IEAVKRAQELAAKMGFRQDPEFAPIINCFPGQP-PVDAAVPQKPTKAPVL--R 185
AN N IE ++A EL AK+ + P+I G P P + AV + +
Sbjct: 205 ANFMNDAIEKARKAAELHAKI--QSTLSMKPLILATAGNPGPHNMAVLANLHAMGIAPPK 262
Query: 186 VDALGREIDEHGNV-VNRTKPSNLS-----------TLKVNINKQKKDAF-QILKPELEV 232
V+ L R H + ++ +P + S TLK NI K++ F Q LK +
Sbjct: 263 VEPLARSPSHHLSFWMSSDEPVDASGKEIELTHRMPTLKANIRAVKREQFRQQLKEKPSD 322
Query: 233 DPNVNPHFDPRMGINKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGXXXXXXXX 292
D +FDPR+ + + L+PK+ F+F E+G++ K A+ +R K+Q +
Sbjct: 323 DLESTSYFDPRVAL--APALKPKK-GFRFHEQGRFEKIAQRIRTKAQLEKLQMEIAQAAK 379
Query: 293 XXXXXXXGGTDINPNLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIED 352
G + L +A + KE + IP IEWWD+ +L + ++S + D
Sbjct: 380 KT------GIQASTKLALIAPK---KELGEGEIPNIEWWDSYIL--PFHINLSAHTNL-D 427
Query: 353 KLKREKITIYVEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLAREKDRQEMIRQG 412
+++ +T VEH R +K+ QE +R G
Sbjct: 428 EVEMHGVTNLVEHPTQMAPPVDTDKPVTLGVYLTKKEQKKLRRQTRREGQKEVQEKVRLG 487
Query: 413 LIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTPAERRE 472
L+ PP+PKV++SNLM+VLG+EA QDPT++E +R+ A+R++AH + N ARKLT +R+E
Sbjct: 488 LMPPPEPKVRISNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKE 547
Query: 473 KKERKLFDDPSSVETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVVVEG 532
KK +KL +D S ++VY+I +L +P +FKV+ NA++ LTG V+ + +N+VV +G
Sbjct: 548 KKVKKLKEDLSH-GVHIAVYRIRNLHNPAKKFKVEANANQLYLTGTVVLHKDVNIVVGKG 606
Query: 533 GSKSIKRYGKLMLRRIDWAKAVKXXXXXXXXXXXKPVNKCVLVWQGNVARPSFNRFFVHE 592
G K+ K++ +LML RI + + N+C LVW+G ++ +
Sbjct: 607 GPKAQKKFKRLMLTRIKLDEPNSKRDEHPDADESRRNNRCSLVWEGTSKERNYGEVKFKQ 666
Query: 593 CMTEAAAKKVFADAGVAHYWDLAVN 617
C TE A++ F G HYWDLA++
Sbjct: 667 CPTENMAREHFKKHGTEHYWDLALS 691
>UNIPROTKB|J9P3I5 [details] [associations]
symbol:PRPF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR002483 InterPro:IPR027104 Pfam:PF01480
PROSITE:PS51025 SMART:SM00311 GO:GO:0006397 Gene3D:1.20.1390.10
GeneTree:ENSGT00390000011497 InterPro:IPR010541 InterPro:IPR013881
PANTHER:PTHR14212 Pfam:PF06544 Pfam:PF08572 EMBL:AAEX03011047
Ensembl:ENSCAFT00000044154 Uniprot:J9P3I5
Length = 669
Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 137/367 (37%), Positives = 199/367 (54%)
Query: 193 IDEHGNVVNRT-KPSNLS----TLKVNINKQKKDAF-QILKPELEVDPNVNPHFDPRMGI 246
+DE G V+ T K L+ TLK NI K++ F Q LK + D N FDPR+ I
Sbjct: 258 LDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEKPSEDMESNTFFDPRVSI 317
Query: 247 NKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGXXXXXXXXXXXXXXXGGTDINP 306
S+ R +R TF+F ++GK+ K A+ LR K+Q + G +
Sbjct: 318 APSQ--RQRR-TFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAARKT------GIHTST 368
Query: 307 NLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREK---ITIYV 363
L +A + KE + IPEIEWWD+ ++ G D+T E+ KRE IT V
Sbjct: 369 RLALIAPK---KELKEGDIPEIEWWDSYIIPNGF------DLT-EENPKREDYFGITNLV 418
Query: 364 EHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLAREKDRQEMIRQGLIEPPKPKVKM 423
EH R +K+ QE +R GL+ PP+PKV++
Sbjct: 419 EHPAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRI 478
Query: 424 SNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTPAERREKKERKLFDDPS 483
SNLM+VLG+EA QDPT++E +R+ A+R++AH + N ARKLT +R+ KK +KL +D S
Sbjct: 479 SNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDIS 538
Query: 484 SVETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKL 543
+SVY++ +LS+P +FK++ NA + LTG V+ + +NVVVVEGG K+ K++ +L
Sbjct: 539 Q-GVHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQKKFKRL 597
Query: 544 MLRRIDW 550
ML RI W
Sbjct: 598 MLHRIKW 604
>WB|WBGene00010844 [details] [associations]
symbol:prp-3 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] InterPro:IPR027104 GO:GO:0009792 GO:GO:0006898
eggNOG:NOG268901 GeneTree:ENSGT00390000011497 HOGENOM:HOG000205412
KO:K12843 InterPro:IPR010541 InterPro:IPR013881 PANTHER:PTHR14212
Pfam:PF06544 Pfam:PF08572 EMBL:Z49128 PIR:T23692 RefSeq:NP_499300.1
ProteinModelPortal:Q21486 SMR:Q21486 STRING:Q21486 PaxDb:Q21486
EnsemblMetazoa:M03C11.7.1 EnsemblMetazoa:M03C11.7.2 GeneID:176461
KEGG:cel:CELE_M03C11.7 UCSC:M03C11.7.1 CTD:176461 WormBase:M03C11.7
InParanoid:Q21486 OMA:QSTGISS NextBio:892676 Uniprot:Q21486
Length = 621
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 128/400 (32%), Positives = 198/400 (49%)
Query: 218 QKKDAFQILKPELEVDPNVNPHFDPRMGINKSKLLRPKRMTFQFVEEGKWSKEAEILRVK 277
+KK QI K E + + + DPR+ +++ +R F F E+G++ K A R
Sbjct: 223 EKKVQQQITKESKEPEKLIE-YLDPRI---QARTADRRRRGFNFHEKGEFEKLANKQRAM 278
Query: 278 SQFGEAGXXXXXXXXXXXXXXXGGTDINPNLIEVAERVIT-KEKPKDPIPEIEWWDAPLL 336
++ T I+ + +++A T K ++ +P+IEWWD +L
Sbjct: 279 AKLERLQNEVSSAAQS--------TGIS-SAVKLAMVTPTGTAKMENGVPDIEWWDMLVL 329
Query: 337 LTGSYADISDDVTIEDKLKREKITI--YVEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 394
+Y D++ E+ ++R T+ VEH
Sbjct: 330 DKVNY----DEIPAENDMERYSQTVSELVEHPISMRAPTEPLTQQYLKVYLTTKEKKKIR 385
Query: 395 XXXRLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQ 454
R K++ E IR GL + P+PKVK+SNLM+VLG+EA QDPT++E ++R AER +
Sbjct: 386 RQNRKEVLKEKTEKIRLGLEKAPEPKVKISNLMRVLGNEAIQDPTKMEAQVRKQMAERLK 445
Query: 455 AHIDRNIARKLTPAERREKKERKLFDDPSSVETIVSVYKINDLSHPKTRFKVDVNAHENR 514
H N RKLT ++R KK +KL +D S+ VSVY++ L+HP +FKV+ NA + +
Sbjct: 446 KHETLNAERKLTEDQKRAKKTKKLSEDTSTAVN-VSVYRVKSLAHPSKKFKVETNAKQLQ 504
Query: 515 LTGCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAVKXXXXXXXXXXXKPVNKCVL 574
++G ++ + NV+VVEGG K K Y LM+ RI W+ + N C +
Sbjct: 505 MSGAIMMHKAQNVIVVEGGPKQQKFYKNLMINRIKWSDEIIGQKKDAEKDAPGERNLCEM 564
Query: 575 VWQGNVARPSFNRFFVHECMTEAAAKKVFADAGVAHYWDL 614
+W+G V R +F F VH E A++ F GVA YWDL
Sbjct: 565 IWEGQVKRRNFRDFTVHTATLEKQAREFFEKHGVAQYWDL 604
>DICTYBASE|DDB_G0274213 [details] [associations]
symbol:prpf3 "pre-mRNA processing factor 3"
species:44689 "Dictyostelium discoideum" [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA;ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR027104 dictyBase:DDB_G0274213
GenomeReviews:CM000151_GR GO:GO:0003676 EMBL:AAFI02000012
GO:GO:0000398 GO:GO:0046540 eggNOG:NOG268901 KO:K12843
InterPro:IPR010541 InterPro:IPR013881 PANTHER:PTHR14212
Pfam:PF06544 Pfam:PF08572 OMA:IDWTENA RefSeq:XP_644258.1
EnsemblProtists:DDB0233224 GeneID:8619686 KEGG:ddi:DDB_G0274213
InParanoid:Q8T2A7 Uniprot:Q8T2A7
Length = 571
Score = 375 (137.1 bits), Expect = 1.4e-40, Sum P(2) = 1.4e-40
Identities = 90/239 (37%), Positives = 122/239 (51%)
Query: 398 RLARE-KDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAH 456
R A E ++RQE I G+ PP+ KVK+SNLM+V+G++A DPT+ E+ ER A
Sbjct: 334 RRAEEARERQERIMNGMEAPPENKVKLSNLMRVIGTQAVLDPTKALLEVTKKMEERAAAR 393
Query: 457 IDRNIARKLTPAERREKKERKLFDDPSSVETIVSVYKINDLSHPKTRFKVDVNAHENRLT 516
+N KLTP +R+EKK K+ D E S+YK+ DLSHP R + N+ EN T
Sbjct: 394 DKKNQENKLTPEQRKEKKRDKILIDAKQ-ELYCSLYKVVDLSHPLYRSIIGRNSKENLAT 452
Query: 517 GCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKA--VKXXXXXXXXXXX-------K 567
GC + N++ EGG K K++ KL+L RIDW +K K
Sbjct: 453 GCIIFHPSCNLIAFEGGLKIQKKFKKLLLNRIDWDNPPPIKQSDPEQQTKHQNNSDLYPK 512
Query: 568 PV----NKCVLVWQGNVARPSFNRFFVHECMTEAAAKKVFADAGVAHYWDLAVNFNDEI 622
P N C LVW G + F F E+ A+K + V HYWD+ NF+ EI
Sbjct: 513 PPEGTPNSCHLVWTGPILEAHFKGFNYEISPLESQARKYLQEHNVPHYWDMVKNFSPEI 571
Score = 78 (32.5 bits), Expect = 1.4e-40, Sum P(2) = 1.4e-40
Identities = 24/87 (27%), Positives = 39/87 (44%)
Query: 193 IDEHGNVVNRTKPSNLSTLKVN----INKQKKDAFQILKPELEVDPNVNPHFDPRMGINK 248
ID++ + P+ KV I K KD E FDPR+ ++
Sbjct: 108 IDQNVTTAQTSIPTPTIATKVEQPTIITKDNKDEETTTTTTTEAAGENEMFFDPRIKVSN 167
Query: 249 SKLLRPKRMTFQFVEEGKWSKEAEILR 275
K + K +F F++ G++SK+A+ LR
Sbjct: 168 DK--KKKLNSFTFIQPGRYSKKADKLR 192
Score = 61 (26.5 bits), Expect = 8.5e-39, Sum P(2) = 8.5e-39
Identities = 23/107 (21%), Positives = 47/107 (43%)
Query: 253 RPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGXXXXXXXXXXXXXXXGGTDINPNLIEVA 312
+ K +F F++ G++SK+A+ LR ++ E T+ +I ++
Sbjct: 170 KKKLNSFTFIQPGRYSKKADKLRSQALAEEMKKQVELNSLNAKK----NTESMETIISIS 225
Query: 313 ERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREKI 359
E +P IEWWD +L ++++ T ++ +K +I
Sbjct: 226 E-----------VPSIEWWDNDILKDEIQNNLNN--TEDENIKENQI 259
Score = 39 (18.8 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 194 DEHGNVVNRTKPSNLSTLKVN-INK 217
DE N +N T+ N+ ++N +NK
Sbjct: 240 DEIQNNLNNTEDENIKENQINELNK 264
>CGD|CAL0003600 [details] [associations]
symbol:orf19.910 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005816 "spindle pole body"
evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR027104 CGD:CAL0003600 EMBL:AACQ01000019
EMBL:AACQ01000018 eggNOG:NOG268901 KO:K12843 InterPro:IPR010541
InterPro:IPR013881 PANTHER:PTHR14212 Pfam:PF06544 Pfam:PF08572
RefSeq:XP_721029.1 RefSeq:XP_721149.1 STRING:Q5AH86 GeneID:3637209
GeneID:3637406 KEGG:cal:CaO19.8528 KEGG:cal:CaO19.910
Uniprot:Q5AH86
Length = 446
Score = 356 (130.4 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
Identities = 78/224 (34%), Positives = 123/224 (54%)
Query: 398 RLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHI 457
R +++++Q+ I+ GL PP PKVK+SNLM VL +E+ +DPT +E ++ +R H+
Sbjct: 226 RQLKQQEKQDRIKLGLDPPPPPKVKLSNLMNVLTNESIKDPTAVENRVKREIQQRVDKHL 285
Query: 458 DRNIARKLTPAERREKKERKLFDD-PSSVETIVSVYKINDLSHPKTRFKVDVNAHENRLT 516
+N ARKLT ++ EK K D + + T +VYKI+ L +PK FK++++A E L
Sbjct: 286 AQNEARKLTKEQKHEKLWNKQEKDLANGIHT--TVYKIDKLVNPKHLFKLNISAQEENLV 343
Query: 517 GCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAVKXXXXXXXXXXXKPVNKCVLVW 576
G + N+V+VEGG KSI Y KLM++RI W + V NKC LVW
Sbjct: 344 GVCLKNPKFNLVIVEGGEKSIGHYKKLMMKRIKWTENVSQSATNDSIDDLSN-NKCSLVW 402
Query: 577 QGNVARPSFNRFFVHECMTEAAAKKVFADAGVAHYWDLAVNFND 620
+G++ F ++ + + A + +YW LA + +
Sbjct: 403 EGSLPDVHFQKWSIMYSRDDEEALTALKKFDLENYWRLASSLKE 446
Score = 88 (36.0 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
Identities = 43/159 (27%), Positives = 71/159 (44%)
Query: 214 NINKQKKDAFQILKPELE-VDP-NVNPHFDPR-MGIN--KSKLLRPKRMTFQFVEEGKWS 268
NI K KD + + + DP +NP+ D M IN KS+ + P +F+ +GK+
Sbjct: 51 NIPKLPKDHNPLRQSNQKWFDPLALNPYLDQSDMVINNKKSRHIPPP---LKFISQGKYV 107
Query: 269 KEAEILRVKSQFGEAGXXXXXXXXXXXXXXXGGTDINPNLIEVAERVITKEKPKDPIPEI 328
+ E LR K + G + P+ + E++ E P I
Sbjct: 108 AQGEKLREKLKVEHE-----QTRELEAIKQQG---LIPDET-IGEQLYQLEVQ----PLI 154
Query: 329 EWWDAPLLLTGSYADISDDV--TIEDKLKREKITIYVEH 365
EWWD P L +Y +I+D+ ++D+ + IT Y++H
Sbjct: 155 EWWDRPYLRDNNYMNINDESRKVLDDET--QPITSYIQH 191
>UNIPROTKB|Q5AH86 [details] [associations]
symbol:PRP3 "Putative uncharacterized protein PRP3"
species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR027104 CGD:CAL0003600
EMBL:AACQ01000019 EMBL:AACQ01000018 eggNOG:NOG268901 KO:K12843
InterPro:IPR010541 InterPro:IPR013881 PANTHER:PTHR14212
Pfam:PF06544 Pfam:PF08572 RefSeq:XP_721029.1 RefSeq:XP_721149.1
STRING:Q5AH86 GeneID:3637209 GeneID:3637406 KEGG:cal:CaO19.8528
KEGG:cal:CaO19.910 Uniprot:Q5AH86
Length = 446
Score = 356 (130.4 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
Identities = 78/224 (34%), Positives = 123/224 (54%)
Query: 398 RLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHI 457
R +++++Q+ I+ GL PP PKVK+SNLM VL +E+ +DPT +E ++ +R H+
Sbjct: 226 RQLKQQEKQDRIKLGLDPPPPPKVKLSNLMNVLTNESIKDPTAVENRVKREIQQRVDKHL 285
Query: 458 DRNIARKLTPAERREKKERKLFDD-PSSVETIVSVYKINDLSHPKTRFKVDVNAHENRLT 516
+N ARKLT ++ EK K D + + T +VYKI+ L +PK FK++++A E L
Sbjct: 286 AQNEARKLTKEQKHEKLWNKQEKDLANGIHT--TVYKIDKLVNPKHLFKLNISAQEENLV 343
Query: 517 GCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAVKXXXXXXXXXXXKPVNKCVLVW 576
G + N+V+VEGG KSI Y KLM++RI W + V NKC LVW
Sbjct: 344 GVCLKNPKFNLVIVEGGEKSIGHYKKLMMKRIKWTENVSQSATNDSIDDLSN-NKCSLVW 402
Query: 577 QGNVARPSFNRFFVHECMTEAAAKKVFADAGVAHYWDLAVNFND 620
+G++ F ++ + + A + +YW LA + +
Sbjct: 403 EGSLPDVHFQKWSIMYSRDDEEALTALKKFDLENYWRLASSLKE 446
Score = 88 (36.0 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
Identities = 43/159 (27%), Positives = 71/159 (44%)
Query: 214 NINKQKKDAFQILKPELE-VDP-NVNPHFDPR-MGIN--KSKLLRPKRMTFQFVEEGKWS 268
NI K KD + + + DP +NP+ D M IN KS+ + P +F+ +GK+
Sbjct: 51 NIPKLPKDHNPLRQSNQKWFDPLALNPYLDQSDMVINNKKSRHIPPP---LKFISQGKYV 107
Query: 269 KEAEILRVKSQFGEAGXXXXXXXXXXXXXXXGGTDINPNLIEVAERVITKEKPKDPIPEI 328
+ E LR K + G + P+ + E++ E P I
Sbjct: 108 AQGEKLREKLKVEHE-----QTRELEAIKQQG---LIPDET-IGEQLYQLEVQ----PLI 154
Query: 329 EWWDAPLLLTGSYADISDDV--TIEDKLKREKITIYVEH 365
EWWD P L +Y +I+D+ ++D+ + IT Y++H
Sbjct: 155 EWWDRPYLRDNNYMNINDESRKVLDDET--QPITSYIQH 191
>POMBASE|SPAC29E6.02 [details] [associations]
symbol:prp3 "U4/U6 x U5 tri-snRNP complex subunit Prp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0044732
"mitotic spindle pole body" evidence=IDA] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS;IMP] [GO:0046540 "U4/U6 x
U5 tri-snRNP complex" evidence=ISS] InterPro:IPR027104
PomBase:SPAC29E6.02 EMBL:CU329670 GO:GO:0044732 GO:GO:0046540
GO:GO:0045292 EMBL:Z66525 eggNOG:NOG268901 HOGENOM:HOG000205412
KO:K12843 OrthoDB:EOG4VHPGB InterPro:IPR010541 InterPro:IPR013881
PANTHER:PTHR14212 Pfam:PF06544 Pfam:PF08572 PIR:S62508
RefSeq:NP_594560.1 STRING:Q09856 EnsemblFungi:SPAC29E6.02.1
GeneID:2541686 KEGG:spo:SPAC29E6.02 OMA:IDWTENA NextBio:20802779
Uniprot:Q09856
Length = 542
Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
Identities = 103/319 (32%), Positives = 153/319 (47%)
Query: 315 VITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREKITIYVEHXXXXXXXXX 374
+ +K +D IP IEWWD P + Y D D+ + I ++H
Sbjct: 229 ITSKSIGRDTIPNIEWWDLPFIK--DYNDYGDENNWLIDGPQSIINSAIQHPIPVLPPYA 286
Query: 375 XXXXXXXXXXXXXXXXXXXXXXXRLAREKDRQEMIRQGL-IEPPKP-KVKMSNLMKVLGS 432
R K++Q+ RQ L IEPP+P KVK+SNLM VLG
Sbjct: 287 KNQPSSHSVFLTKKEQKKIRRQTRAEARKEKQD--RQLLGIEPPEPPKVKLSNLMHVLGD 344
Query: 433 EATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTPAERREKKERKLFDDPSSVETIVSVY 492
+A +DPT++E E+R ER H N RKLTP ER+EK RK D+ S+ V+
Sbjct: 345 DAIKDPTKIEAEVRKQVEERRLRHERENEERKLTPEERKEKAFRKK-DEDSAAGLRCLVF 403
Query: 493 KINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWA- 551
+I L+H R K+D+NA + TG ++ N+V+ E G K+IK+ +LML RIDW
Sbjct: 404 RIKYLAHRPHRLKIDLNAKQWGATGVCILNANFNLVIFEAGQKAIKKLKRLMLERIDWTD 463
Query: 552 ---KAVKXXXXXXXXXXXKPVN----KCVLVWQGNVARPSFNRFFVHECMTEAAAKKVFA 604
++ + +N C LVW+G + R +F + C +E AK
Sbjct: 464 TSRNSIIAQGNKLVDTEGRELNYTENTCNLVWEGEIGRRAFRYWSFRSCPSENDAKSYLE 523
Query: 605 DAGVA-HYWDLAVNFNDEI 622
+ G A H+W LA ++++ +
Sbjct: 524 EQGGAEHFWMLAKSWSENV 542
>UNIPROTKB|I3LQS3 [details] [associations]
symbol:PRPF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
InterPro:IPR002483 InterPro:IPR027104 Pfam:PF01480 PROSITE:PS51025
SMART:SM00311 GO:GO:0005737 GO:GO:0006397 GO:GO:0015030
Gene3D:1.20.1390.10 GeneTree:ENSGT00390000011497 InterPro:IPR010541
InterPro:IPR013881 PANTHER:PTHR14212 Pfam:PF06544 Pfam:PF08572
Ensembl:ENSSSCT00000030415 OMA:THTHSIN Uniprot:I3LQS3
Length = 640
Score = 403 (146.9 bits), Expect = 4.1e-37, P = 4.1e-37
Identities = 82/184 (44%), Positives = 121/184 (65%)
Query: 398 RLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHI 457
R +K+ QE +R GL+ PP+PKV++SNLM+VLG+EA QDPT++E +R+ A+R++AH
Sbjct: 444 RREAQKELQEKVRLGLMPPPEPKVRISNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHE 503
Query: 458 DRNIARKLTPAERREKKERKLFDDPSSVETIVSVYKINDLSHPKTRFKVDVNAHENRLTG 517
+ N ARKLT +R+ KK +KL +D S +SVY++ +LS+P +FK++ NA + LTG
Sbjct: 504 EANAARKLTAEQRKVKKIKKLKEDISQ-GVHISVYRVRNLSNPAKKFKIEANAGQLYLTG 562
Query: 518 CAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAVKXXXXX----XXXXXXKPVNKCV 573
V+ + +NVVVVEGG K+ K++ +LML RI W + K NKCV
Sbjct: 563 VVVLHKDVNVVVVEGGPKAQKKFKRLMLHRIKWDEQTSNTKGDDDEESDEEAVKKTNKCV 622
Query: 574 LVWQ 577
LVW+
Sbjct: 623 LVWE 626
>UNIPROTKB|G4NBX8 [details] [associations]
symbol:MGG_01157 "U4/U6 small nuclear ribonucleoprotein
Prp3" species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR027104 EMBL:CM001235 GO:GO:0003676
GO:GO:0030529 KO:K12843 InterPro:IPR010541 InterPro:IPR013881
PANTHER:PTHR14212 Pfam:PF06544 Pfam:PF08572 RefSeq:XP_003717764.1
EnsemblFungi:MGG_01157T0 GeneID:2675174 KEGG:mgr:MGG_01157
Uniprot:G4NBX8
Length = 487
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 91/307 (29%), Positives = 146/307 (47%)
Query: 322 KDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREKITIYVEHXXXXXXXXXXXXXXXX 381
++P P+IEWWD L+ +Y I D+ T+ IT ++H
Sbjct: 176 EEP-PDIEWWDEGLVDGQNYDRIEDESTLRITSDDSIITELIQHPVALEPPQDKNVQAPK 234
Query: 382 XXXXXXXXXXXXXXXXRLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRL 441
R A K++Q +R GL+ P PK+ +N+M VL +A +DPT +
Sbjct: 235 PMFLTAKEQKKLRRQRRAADLKEKQAKVRLGLLPPEPPKITRNNMMVVLADQAVKDPTAV 294
Query: 442 EKEIRSAAAEREQAHIDRNIARKLTPAERREKKERKLFDDPSSVETIVSVYKINDLSHPK 501
E ++ A+R + H+ N RKLT +R EK D S ++ V+KIN L++ +
Sbjct: 295 EAQVNREVAKRHEGHLQANEERKLTKEQRHEKLAANQEKDASKGLHLL-VFKINSLANGQ 353
Query: 502 TRFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAVKXXXXXX 561
R+K+ VNA ++ LTG ++ ++V+VEGG+ SI +Y KLML RI+W +
Sbjct: 354 HRYKIAVNAEQHALTGICIMHPRFSIVIVEGGAWSIAKYKKLMLNRINWTENTPSRDRDS 413
Query: 562 XXXXX-----KP-----------VNKCVLVWQGNVARPSFNRFFVHECMTEAAAKKVFAD 605
KP N+C LV++G V +F ++ C T+A A+ V A
Sbjct: 414 AKAGVLRDWLKPEDDKGGLKDMSANQCKLVFEGEVKTRAFRKWGSKVCETDAEARDVLAR 473
Query: 606 AGVAHYW 612
+ ++W
Sbjct: 474 VKMENFW 480
>TAIR|locus:2103585 [details] [associations]
symbol:AT3G56790 "AT3G56790" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR027104 EMBL:CP002686
GenomeReviews:BA000014_GR EMBL:AL390921 eggNOG:NOG268901
InterPro:IPR013881 PANTHER:PTHR14212 Pfam:PF08572 IPI:IPI00547485
PIR:T51267 RefSeq:NP_191238.1 UniGene:At.65284 PRIDE:Q9LES8
EnsemblPlants:AT3G56790.1 GeneID:824846 KEGG:ath:AT3G56790
TAIR:At3g56790 HOGENOM:HOG000152995 InParanoid:Q9LES8
Genevestigator:Q9LES8 Uniprot:Q9LES8
Length = 206
Score = 154 (59.3 bits), Expect = 6.6e-25, Sum P(3) = 6.6e-25
Identities = 37/60 (61%), Positives = 41/60 (68%)
Query: 170 VDAAVPQKPTKAPVLRVDALGREIDEHGNVVNRTKPSNLSTLKVNINKQKKDAFQ-ILKP 228
+D AV K TK LRVD LGREIDE+G+V+N LSTL VN NK KKD FQ ILKP
Sbjct: 91 IDTAVAHKQTKGFFLRVDVLGREIDEYGHVIN------LSTLMVNNNKHKKDVFQNILKP 144
Score = 138 (53.6 bits), Expect = 6.6e-25, Sum P(3) = 6.6e-25
Identities = 29/41 (70%), Positives = 35/41 (85%)
Query: 398 RLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSE-ATQD 437
R+A+EK++Q+MIRQ L EP K KVK+SNLMKVL SE ATQD
Sbjct: 163 RVAKEKEKQKMIRQALFEPQKSKVKLSNLMKVLASELATQD 203
Score = 41 (19.5 bits), Expect = 6.6e-25, Sum P(3) = 6.6e-25
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 136 IEAVKRAQELA 146
+EAVKR QELA
Sbjct: 80 LEAVKRFQELA 90
>SGD|S000002881 [details] [associations]
symbol:PRP3 "Splicing factor" species:4932 "Saccharomyces
cerevisiae" [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA;IDA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA;IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR027104
SGD:S000002881 EMBL:BK006938 GO:GO:0005681 GO:GO:0000398
GO:GO:0046540 EMBL:U33050 PIR:S69640 RefSeq:NP_010761.3
RefSeq:NP_010766.3 ProteinModelPortal:Q03338 DIP:DIP-5266N
IntAct:Q03338 MINT:MINT-490402 STRING:Q03338 PaxDb:Q03338
PRIDE:Q03338 EnsemblFungi:YDR473C GeneID:852084 GeneID:852089
KEGG:sce:YDR473C KEGG:sce:YDR478W CYGD:YDR473c eggNOG:NOG268901
GeneTree:ENSGT00390000011497 HOGENOM:HOG000205412 KO:K12843
KO:K14531 OMA:NERRHED OrthoDB:EOG4VHPGB NextBio:970400
Genevestigator:Q03338 GermOnline:YDR473C InterPro:IPR010541
InterPro:IPR013881 PANTHER:PTHR14212 Pfam:PF06544 Pfam:PF08572
Uniprot:Q03338
Length = 469
Score = 234 (87.4 bits), Expect = 8.5e-17, P = 8.5e-17
Identities = 59/218 (27%), Positives = 105/218 (48%)
Query: 398 RLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEAT-QDPTRLEKEIRSAAAEREQAH 456
++ARE R+ I+ GL+ P+PKVK+SN+M V ++ DPT EK ++ R++ H
Sbjct: 250 KMAREA-REIKIKLGLLPKPEPKVKLSNMMSVFENDQNITDPTAWEKVVKDQVDLRKRKH 308
Query: 457 IDRNIARKLTPAERREKKERKLFDDPSSVETIVSVYKINDLSHPKTRFKVDVNAHENRLT 516
++ N R +RR++ + P+ V++ +L +PK RFK+ +N+ E L
Sbjct: 309 LEENERRHEDAIKRRKEAVNMNVEKPTVYHC--KVFQFKNLQNPKIRFKLKMNSKELSLK 366
Query: 517 G-CAVICE-GINVVVVEGGSKSIKRYGKLMLRRIDWAKAVKXXXXXXXXXXXKPVNKCVL 574
G C I + G +++V G KS K Y L+++RI W + + N
Sbjct: 367 GLCLRIRDDGPGIIIVVGNEKSCKFYENLVMKRIKWNEDFELHTNTGDIKMDMHNNSISK 426
Query: 575 VWQGNVARPSFNRFFVHECMTEAAAKKVFADAGVAHYW 612
W+G + F +F+ C + + + H++
Sbjct: 427 TWEGYLQDCKFKGWFMKVCNDQDSLLRTLGQFDSEHFY 464
>UNIPROTKB|B4DSY9 [details] [associations]
symbol:PRPF3 "U4/U6 small nuclear ribonucleoprotein Prp3"
species:9606 "Homo sapiens" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR027104 GO:GO:0003676 GO:GO:0030529
InterPro:IPR013881 PANTHER:PTHR14212 Pfam:PF08572 EMBL:AL611942
UniGene:Hs.11776 HGNC:HGNC:17348 EMBL:AK299980 IPI:IPI01012317
STRING:B4DSY9 Ensembl:ENST00000543398 Uniprot:B4DSY9
Length = 281
Score = 182 (69.1 bits), Expect = 9.0e-12, P = 9.0e-12
Identities = 65/208 (31%), Positives = 95/208 (45%)
Query: 137 EAVKRAQ-ELAAKMGFRQDPEFAPIINCFP---GQPPVDAAVPQKPTKAPVLRVDALGRE 192
E R Q +LA K G + + N P V+ KPT P++ +D GR
Sbjct: 73 ELQARIQAQLALKPGLIGNANMVGLANLHAMGIAPPKVELKDQTKPT--PLI-LDEQGRT 129
Query: 193 IDEHGNVVNRTKPSNLSTLKVNINKQKKDAF-QILKPELEVDPNVNPHFDPRMGINKSKL 251
+D G + T + TLK NI K++ F Q LK + D N FDPR+ I S+
Sbjct: 130 VDATGKEIELTH--RMPTLKANIRAVKREQFKQQLKEKPSEDMESNTFFDPRVSIAPSQ- 186
Query: 252 LRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGXXXXXXXXXXXXXXXGGTDINPNLIEV 311
R +R TF+F ++GK+ K A+ LR K+Q + G + L +
Sbjct: 187 -RQRR-TFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAARKT------GIHTSTRLALI 238
Query: 312 AERVITKEKPKDPIPEIEWWDAPLLLTG 339
A + KE + IPEIEWWD+ ++ G
Sbjct: 239 APK---KELKEGDIPEIEWWDSYIIPNG 263
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.389 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 622 478 0.00079 119 3 11 22 0.41 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 26
No. of states in DFA: 615 (65 KB)
Total size of DFA: 273 KB (2143 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 39.83u 0.12s 39.95t Elapsed: 00:00:02
Total cpu time: 39.84u 0.12s 39.96t Elapsed: 00:00:02
Start: Sat May 11 09:01:20 2013 End: Sat May 11 09:01:22 2013