Query 006988
Match_columns 622
No_of_seqs 244 out of 1280
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 17:21:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006988.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006988hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0546 HSP90 co-chaperone CPR 100.0 6.3E-54 1.4E-58 445.6 17.6 174 5-178 7-181 (372)
2 KOG0880 Peptidyl-prolyl cis-tr 100.0 4.6E-45 9.9E-50 352.2 16.0 162 7-176 40-203 (217)
3 KOG0879 U-snRNP-associated cyc 100.0 2.9E-44 6.2E-49 328.1 12.3 169 4-175 8-177 (177)
4 cd01926 cyclophilin_ABH_like c 100.0 3.4E-41 7.4E-46 323.8 18.7 164 7-173 1-164 (164)
5 PTZ00221 cyclophilin; Provisio 100.0 6.6E-41 1.4E-45 340.0 19.3 170 2-175 48-219 (249)
6 PLN03149 peptidyl-prolyl isome 100.0 1.3E-40 2.9E-45 326.2 18.1 168 4-174 16-185 (186)
7 PTZ00060 cyclophilin; Provisio 100.0 1.7E-40 3.7E-45 324.6 18.6 169 5-175 14-182 (183)
8 KOG0111 Cyclophilin-type pepti 100.0 3.9E-41 8.5E-46 329.0 9.8 164 4-175 134-297 (298)
9 KOG0881 Cyclophilin type pepti 100.0 2.6E-39 5.6E-44 292.7 8.3 150 5-171 8-159 (164)
10 COG0652 PpiB Peptidyl-prolyl c 100.0 1.2E-37 2.5E-42 296.9 14.9 133 9-160 2-137 (158)
11 cd01928 Cyclophilin_PPIL3_like 100.0 1.5E-36 3.3E-41 288.8 16.1 147 9-172 3-151 (153)
12 cd01922 cyclophilin_SpCYP2_lik 100.0 1.8E-36 3.9E-41 286.3 16.4 143 11-170 2-145 (146)
13 cd01927 cyclophilin_WD40 cyclo 100.0 3.5E-36 7.6E-41 284.8 16.2 143 11-170 2-146 (148)
14 cd01923 cyclophilin_RING cyclo 100.0 4.1E-36 8.9E-41 287.5 16.6 149 8-173 1-151 (159)
15 cd01921 cyclophilin_RRM cyclop 100.0 6.8E-35 1.5E-39 280.9 15.4 146 11-173 2-157 (166)
16 KOG0865 Cyclophilin type pepti 100.0 3.8E-35 8.3E-40 281.7 9.5 162 5-174 2-166 (167)
17 PRK10903 peptidyl-prolyl cis-t 100.0 4.6E-34 9.9E-39 280.9 16.6 151 4-173 26-187 (190)
18 KOG0883 Cyclophilin type, U bo 100.0 7.3E-35 1.6E-39 303.2 11.1 151 4-171 275-427 (518)
19 cd01925 cyclophilin_CeCYP16-li 100.0 8E-34 1.7E-38 274.8 16.8 153 4-173 3-158 (171)
20 PRK10791 peptidyl-prolyl cis-t 100.0 8.2E-34 1.8E-38 273.1 16.1 146 8-172 1-160 (164)
21 KOG0884 Similar to cyclophilin 100.0 3.3E-34 7.2E-39 258.2 10.4 144 9-169 3-149 (161)
22 cd01920 cyclophilin_EcCYP_like 100.0 3.1E-33 6.6E-38 266.7 15.6 140 11-169 2-152 (155)
23 KOG0882 Cyclophilin-related pe 100.0 5.7E-34 1.2E-38 301.5 11.0 147 8-171 406-554 (558)
24 cd00317 cyclophilin cyclophili 100.0 4E-32 8.8E-37 254.5 16.2 143 10-170 1-145 (146)
25 KOG0885 Peptidyl-prolyl cis-tr 100.0 6.1E-33 1.3E-37 288.2 11.4 144 4-164 10-156 (439)
26 PF00160 Pro_isomerase: Cyclop 100.0 2.4E-32 5.2E-37 258.2 14.5 149 10-173 1-154 (155)
27 cd01924 cyclophilin_TLP40_like 100.0 1.6E-31 3.6E-36 259.9 14.3 127 19-156 5-165 (176)
28 KOG0415 Predicted peptidyl pro 100.0 1.1E-30 2.4E-35 269.5 12.0 149 8-173 2-160 (479)
29 KOG0882 Cyclophilin-related pe 97.2 0.00035 7.5E-09 76.4 5.1 133 17-161 108-247 (558)
30 TIGR03268 methan_mark_3 putati 96.6 0.012 2.5E-07 65.8 10.3 114 22-156 376-496 (503)
31 PRK00969 hypothetical protein; 96.3 0.02 4.4E-07 64.1 10.3 113 22-156 379-498 (508)
32 TIGR03268 methan_mark_3 putati 96.3 0.02 4.2E-07 64.0 9.9 104 20-155 200-303 (503)
33 PRK00969 hypothetical protein; 96.3 0.019 4.2E-07 64.2 9.7 104 20-155 203-306 (508)
34 PF12903 DUF3830: Protein of u 96.2 0.012 2.6E-07 56.4 6.5 113 12-155 2-130 (147)
35 COG4070 Predicted peptidyl-pro 96.1 0.018 3.9E-07 62.4 8.1 106 18-155 200-305 (512)
36 COG4070 Predicted peptidyl-pro 95.6 0.028 6.1E-07 61.0 7.3 115 22-157 377-500 (512)
37 KOG3116 Predicted C3H1-type Zn 94.1 0.12 2.5E-06 49.6 6.1 11 274-284 142-152 (177)
38 KOG2985 Uncharacterized conser 93.6 0.1 2.2E-06 53.9 4.9 10 225-234 234-243 (306)
39 PF04126 Cyclophil_like: Cyclo 92.0 0.58 1.2E-05 43.4 7.3 103 11-155 3-113 (120)
40 KOG2812 Uncharacterized conser 81.8 0.73 1.6E-05 49.8 1.6 8 178-185 197-204 (426)
41 KOG2140 Uncharacterized conser 74.0 0.86 1.9E-05 51.7 -0.6 30 117-155 619-648 (739)
42 KOG0526 Nucleosome-binding fac 68.1 73 0.0016 36.8 12.6 16 1-16 247-262 (615)
43 PHA03001 putative virion core 65.7 18 0.00038 34.3 6.1 51 7-70 4-60 (132)
44 KOG2985 Uncharacterized conser 51.6 9.7 0.00021 39.8 2.1 15 221-235 233-247 (306)
45 PF06138 Chordopox_E11: Chordo 50.9 54 0.0012 31.1 6.6 51 7-70 4-61 (130)
46 COG2164 Uncharacterized conser 44.7 19 0.00041 33.0 2.6 22 21-43 13-34 (126)
47 KOG4368 Predicted RNA binding 40.8 67 0.0014 37.5 6.6 7 58-64 221-227 (757)
48 KOG2548 SWAP mRNA splicing reg 39.1 23 0.00049 40.6 2.7 7 37-43 38-44 (653)
49 COG2927 HolC DNA polymerase II 37.6 94 0.002 30.1 6.2 36 109-146 75-111 (144)
50 KOG3064 RNA-binding nuclear pr 34.5 18 0.0004 37.9 1.0 6 122-127 117-122 (303)
51 PF05110 AF-4: AF-4 proto-onco 33.7 30 0.00065 43.7 2.9 6 149-154 332-337 (1191)
52 KOG2138 Predicted RNA binding 31.3 17 0.00037 42.8 0.2 13 132-144 679-691 (883)
53 KOG3794 CBF1-interacting corep 27.2 17 0.00037 40.2 -0.6 17 30-46 94-110 (453)
54 KOG4676 Splicing factor, argin 25.2 61 0.0013 36.1 3.0 118 453-579 275-402 (479)
55 PF05913 DUF871: Bacterial pro 24.3 48 0.001 36.5 2.1 51 104-155 298-349 (357)
56 KOG2146 Splicing coactivator S 24.2 9.5E+02 0.02 26.1 13.0 173 395-594 164-351 (354)
57 PF07174 FAP: Fibronectin-atta 21.9 1.6E+02 0.0035 31.4 5.3 80 19-111 165-244 (297)
58 KOG2740 Clathrin-associated pr 21.7 46 0.00099 36.7 1.3 144 22-178 66-243 (418)
59 KOG3953 SOCS box protein SSB-1 20.8 2.5E+02 0.0054 29.4 6.3 37 9-45 71-108 (242)
No 1
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-54 Score=445.62 Aligned_cols=174 Identities=65% Similarity=1.032 Sum_probs=169.3
Q ss_pred CCCeEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCCC
Q 006988 5 KNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGT 84 (622)
Q Consensus 5 ~np~V~fDtsigg~~~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g~ 84 (622)
.||+|||||+|||+++|+||||||.|+||+||+||++||||+.|.+..++++++|+|+.|||||++|||||||++.++|+
T Consensus 7 ~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGt 86 (372)
T KOG0546|consen 7 TNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGT 86 (372)
T ss_pred CCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCC
Confidence 59999999999999999999999999999999999999999999878899999999999999999999999999999999
Q ss_pred CCCcccCCcccCCCCCCCCCCCeEEEeccCCCCCCCceeEEeeccCCCCCCCceEEEEEecChHHHHHHHhcCCccC-cC
Q 006988 85 GGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTVKK-KK 163 (622)
Q Consensus 85 gg~si~g~~~~dE~~~lkh~~~G~Vsma~sg~ds~GSqFFItL~d~p~LDgk~tVFGkVv~G~eVld~I~~~~t~~g-kp 163 (622)
||++|||.+|.||+|.|+|+.++||+|||.|+|+||||||||+.++|||||+|||||+||.|++||..|+++.++.+ +|
T Consensus 87 GGeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP 166 (372)
T KOG0546|consen 87 GGESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKP 166 (372)
T ss_pred CcccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876 79
Q ss_pred CcccccccCCCCccc
Q 006988 164 ASHVSSSEDSSDGET 178 (622)
Q Consensus 164 ~~~ikIsd~g~~~~~ 178 (622)
..++.|.+||+..+.
T Consensus 167 ~~dV~I~dCGel~~~ 181 (372)
T KOG0546|consen 167 LADVVISDCGELVKK 181 (372)
T ss_pred ccceEeccccccccc
Confidence 999999999988663
No 2
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-45 Score=352.16 Aligned_cols=162 Identities=60% Similarity=0.995 Sum_probs=154.4
Q ss_pred CeEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhh-cCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCCCC
Q 006988 7 PLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCT-GEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTG 85 (622)
Q Consensus 7 p~V~fDtsigg~~~GrIvIELf~d~APktv~NFl~Lct-g~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g~g 85 (622)
-+|||||.+|++++|+|+|+||+.++|+||+||.+||+ +.+|.+ |.|+.||||||||||||||++.+++++
T Consensus 40 ~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~g--------Y~gS~FhRVi~nfmIQGGd~t~g~gtG 111 (217)
T KOG0880|consen 40 HKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYG--------YKGSKFHRVIPNFMIQGGDFTKGDGTG 111 (217)
T ss_pred eEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcc--------cCCceeeeeecCceeecCccccCCCCC
Confidence 36999999999999999999999999999999999999 666655 999999999999999999999999999
Q ss_pred CCcccCCcccCCCCCCCCCCCeEEEeccCCCCCCCceeEEeeccCCCCCCCceEEEEEecChHHHHHHHhcCCcc-CcCC
Q 006988 86 GESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTVK-KKKA 164 (622)
Q Consensus 86 g~si~g~~~~dE~~~lkh~~~G~Vsma~sg~ds~GSqFFItL~d~p~LDgk~tVFGkVv~G~eVld~I~~~~t~~-gkp~ 164 (622)
+.+|||.+|+|||+.|+|+.+|.|+|||.|+|+||+|||||+...+||||+|||||+|++||+||.+|+.+.|+. ++|.
T Consensus 112 g~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~ 191 (217)
T KOG0880|consen 112 GKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPL 191 (217)
T ss_pred CeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999976 5888
Q ss_pred cccccccCCCCc
Q 006988 165 SHVSSSEDSSDG 176 (622)
Q Consensus 165 ~~ikIsd~g~~~ 176 (622)
+.++|++|++..
T Consensus 192 e~v~I~~~g~l~ 203 (217)
T KOG0880|consen 192 EDVVIANCGELP 203 (217)
T ss_pred ccEEEeecCccc
Confidence 999999999553
No 3
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-44 Score=328.10 Aligned_cols=169 Identities=59% Similarity=0.969 Sum_probs=159.0
Q ss_pred CCCCeEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCC
Q 006988 4 KKNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNG 83 (622)
Q Consensus 4 ~~np~V~fDtsigg~~~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g 83 (622)
..||+||||++|||.++|+|.||||.|++|+|++||.++|||+.- ..+++.-|++|.|||||++|||||||+.+++|
T Consensus 8 ~~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r---~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDG 84 (177)
T KOG0879|consen 8 PNNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYR---KDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDG 84 (177)
T ss_pred CCCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccc---cCCccccccccchHHHhhhheeccCceecCCC
Confidence 569999999999999999999999999999999999999999743 33577889999999999999999999999999
Q ss_pred CCCCcccCCcccCCCCCCCCCCCeEEEeccCCCCCCCceeEEeeccCCCCCCCceEEEEEecChHHHHHHHhcCCcc-Cc
Q 006988 84 TGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTVK-KK 162 (622)
Q Consensus 84 ~gg~si~g~~~~dE~~~lkh~~~G~Vsma~sg~ds~GSqFFItL~d~p~LDgk~tVFGkVv~G~eVld~I~~~~t~~-gk 162 (622)
++-.+||+.+|.||++.|+|+.+|+|+|||+|+++||+|||||...+.+||++|+|||+|++|+.++.+|+.+++-. .+
T Consensus 85 tG~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~Nnk 164 (177)
T KOG0879|consen 85 TGVASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNK 164 (177)
T ss_pred ceEEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999864 47
Q ss_pred CCcccccccCCCC
Q 006988 163 KASHVSSSEDSSD 175 (622)
Q Consensus 163 p~~~ikIsd~g~~ 175 (622)
|.-.+.|+.|+++
T Consensus 165 PKl~v~i~qCGem 177 (177)
T KOG0879|consen 165 PKLPVVIVQCGEM 177 (177)
T ss_pred CCCcEEEeecccC
Confidence 7778899999863
No 4
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=3.4e-41 Score=323.83 Aligned_cols=164 Identities=67% Similarity=1.125 Sum_probs=152.4
Q ss_pred CeEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCCCCC
Q 006988 7 PLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGG 86 (622)
Q Consensus 7 p~V~fDtsigg~~~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g~gg 86 (622)
|+||||++++|..+|+|+||||.++||++|+||++||++..|.+. +..||++|.||||+++||||||++..+++.++
T Consensus 1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~---~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~ 77 (164)
T cd01926 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGG---KPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGG 77 (164)
T ss_pred CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcc---cccccCCCEEEEEeCCcEEEcCCccCCCCCCC
Confidence 789999999999999999999999999999999999987544321 34589999999999999999999877778888
Q ss_pred CcccCCcccCCCCCCCCCCCeEEEeccCCCCCCCceeEEeeccCCCCCCCceEEEEEecChHHHHHHHhcCCccCcCCcc
Q 006988 87 ESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTVKKKKASH 166 (622)
Q Consensus 87 ~si~g~~~~dE~~~lkh~~~G~Vsma~sg~ds~GSqFFItL~d~p~LDgk~tVFGkVv~G~eVld~I~~~~t~~gkp~~~ 166 (622)
.++|+..|++|++.+.|+.+|+|+||+.+++++++||||+|.++++||++|+|||+|++|||||++|+.++++.+.|..+
T Consensus 78 ~~~~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~~~~P~~~ 157 (164)
T cd01926 78 KSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNGKPKKK 157 (164)
T ss_pred CcccCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCCCCCCcCC
Confidence 89999999999889999999999999999999999999999999999999999999999999999999999997799999
Q ss_pred cccccCC
Q 006988 167 VSSSEDS 173 (622)
Q Consensus 167 ikIsd~g 173 (622)
|+|.+||
T Consensus 158 i~I~~cG 164 (164)
T cd01926 158 VVIADCG 164 (164)
T ss_pred eEEEECC
Confidence 9999996
No 5
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=6.6e-41 Score=340.04 Aligned_cols=170 Identities=36% Similarity=0.489 Sum_probs=154.6
Q ss_pred CCCCCCeEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecC-ceEEecCCCC
Q 006988 2 SEKKNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKG-FMIQGGDFSK 80 (622)
Q Consensus 2 ~~~~np~V~fDtsigg~~~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg-~vIQgGd~~~ 80 (622)
....+|+|||||+||+.++|+|+||||.+.||+||+||+.||+|..+.+..++..++|+||.||||+++ ||||+|++..
T Consensus 48 ~~~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~ 127 (249)
T PTZ00221 48 EEQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS 127 (249)
T ss_pred cCCCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC
Confidence 345799999999999999999999999999999999999999998876655556677999999999985 8999999753
Q ss_pred CCCCCCCcccCCcccCCCCCCCCCCCeEEEeccCCCCCCCceeEEeeccCCCCCCCceEEEEEecChHHHHHHHhcCCc-
Q 006988 81 GNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTV- 159 (622)
Q Consensus 81 g~g~gg~si~g~~~~dE~~~lkh~~~G~Vsma~sg~ds~GSqFFItL~d~p~LDgk~tVFGkVv~G~eVld~I~~~~t~- 159 (622)
.+..+||..|.+|++.++|+.+|+|+||+.+++++||||||||.++++||++|||||+||+||+||++|+.++++
T Consensus 128 ----~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~ 203 (249)
T PTZ00221 128 ----FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDD 203 (249)
T ss_pred ----CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCC
Confidence 345678889999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred cCcCCcccccccCCCC
Q 006988 160 KKKKASHVSSSEDSSD 175 (622)
Q Consensus 160 ~gkp~~~ikIsd~g~~ 175 (622)
.+.|...|.|.+|+..
T Consensus 204 ~grP~~~V~I~~Cgvl 219 (249)
T PTZ00221 204 VGRPLLPVTVSFCGAL 219 (249)
T ss_pred CCCCCCCeEEEECeEe
Confidence 6789999999999854
No 6
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=1.3e-40 Score=326.18 Aligned_cols=168 Identities=60% Similarity=0.951 Sum_probs=153.3
Q ss_pred CCCCeEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCC
Q 006988 4 KKNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNG 83 (622)
Q Consensus 4 ~~np~V~fDtsigg~~~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g 83 (622)
..||+|||||++++.++|+|+||||.+.||+||+||+.||++.... .+....|++|.||||+++||||||++..+++
T Consensus 16 ~~~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~---~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g 92 (186)
T PLN03149 16 PKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRK---AGLPQGYKGCQFHRVIKDFMIQGGDFLKGDG 92 (186)
T ss_pred CCCCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccc---cCcccccCCcEEEEEcCCcEEEcCCcccCCC
Confidence 4689999999999999999999999999999999999999876321 0122349999999999999999999888888
Q ss_pred CCCCcccCCcccCCCCCCCCCCCeEEEeccCCCCCCCceeEEeeccCCCCCCCceEEEEEe-cChHHHHHHHhcCC-ccC
Q 006988 84 TGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVV-KGLNIVKKIEQVGT-VKK 161 (622)
Q Consensus 84 ~gg~si~g~~~~dE~~~lkh~~~G~Vsma~sg~ds~GSqFFItL~d~p~LDgk~tVFGkVv-~G~eVld~I~~~~t-~~g 161 (622)
.++.++|+..|.+|++.+.|+.+|+|+|++.+++++++||||||.++++||++|||||+|+ +||+||++|+.+++ ..+
T Consensus 93 ~g~~~~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~ 172 (186)
T PLN03149 93 TGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNN 172 (186)
T ss_pred CCcccccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCC
Confidence 8999999999999988899999999999999999999999999999999999999999999 79999999999999 466
Q ss_pred cCCcccccccCCC
Q 006988 162 KKASHVSSSEDSS 174 (622)
Q Consensus 162 kp~~~ikIsd~g~ 174 (622)
.|...|+|.+|+.
T Consensus 173 ~P~~~i~I~~cG~ 185 (186)
T PLN03149 173 RPKLACVISECGE 185 (186)
T ss_pred CCcCCeEEEeCEe
Confidence 8999999999985
No 7
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=1.7e-40 Score=324.61 Aligned_cols=169 Identities=60% Similarity=0.967 Sum_probs=156.4
Q ss_pred CCCeEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCCC
Q 006988 5 KNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGT 84 (622)
Q Consensus 5 ~np~V~fDtsigg~~~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g~ 84 (622)
++|+||||+++++.++|+|+||||.++||++|+||++||+|..... .++.+||+||.||||+|+||||||++..+++.
T Consensus 14 ~~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~--~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~ 91 (183)
T PTZ00060 14 KRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGS--SGKNLHYKGSIFHRIIPQFMCQGGDITNHNGT 91 (183)
T ss_pred CCCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccc--cCcccccCCeEEEEEcCCCeEEeCCccCCCCC
Confidence 6899999999999999999999999999999999999998764311 23678999999999999999999998877788
Q ss_pred CCCcccCCcccCCCCCCCCCCCeEEEeccCCCCCCCceeEEeeccCCCCCCCceEEEEEecChHHHHHHHhcCCccCcCC
Q 006988 85 GGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTVKKKKA 164 (622)
Q Consensus 85 gg~si~g~~~~dE~~~lkh~~~G~Vsma~sg~ds~GSqFFItL~d~p~LDgk~tVFGkVv~G~eVld~I~~~~t~~gkp~ 164 (622)
++.++|+..+.+|.+.+.|..+|+|+|++.+++++++||||||.++++||++|||||+||+|||||++|+.+++..+.|.
T Consensus 92 ~g~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~~~~P~ 171 (183)
T PTZ00060 92 GGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYPK 171 (183)
T ss_pred CCCcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCCCCCCc
Confidence 89999999999998899999999999999999999999999999999999999999999999999999999999888999
Q ss_pred cccccccCCCC
Q 006988 165 SHVSSSEDSSD 175 (622)
Q Consensus 165 ~~ikIsd~g~~ 175 (622)
..|.|.+|+..
T Consensus 172 ~~v~I~~cg~~ 182 (183)
T PTZ00060 172 KPVVVTDCGEL 182 (183)
T ss_pred CCeEEEEeEEc
Confidence 99999999854
No 8
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-41 Score=329.01 Aligned_cols=164 Identities=60% Similarity=0.956 Sum_probs=160.3
Q ss_pred CCCCeEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCC
Q 006988 4 KKNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNG 83 (622)
Q Consensus 4 ~~np~V~fDtsigg~~~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g 83 (622)
..||.|||++.||+...|+|+++|..|+.|+|++||.+||+|+.|.| |+||.||||||.||+||||+++++|
T Consensus 134 ~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfg--------ykgssfhriip~fmcqggdftn~ng 205 (298)
T KOG0111|consen 134 MENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFG--------YKGSSFHRIIPKFMCQGGDFTNGNG 205 (298)
T ss_pred hhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccC--------ccccchhhhhhhhhccCCccccCCC
Confidence 36999999999999999999999999999999999999999999887 9999999999999999999999999
Q ss_pred CCCCcccCCcccCCCCCCCCCCCeEEEeccCCCCCCCceeEEeeccCCCCCCCceEEEEEecChHHHHHHHhcCCccCcC
Q 006988 84 TGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTVKKKK 163 (622)
Q Consensus 84 ~gg~si~g~~~~dE~~~lkh~~~G~Vsma~sg~ds~GSqFFItL~d~p~LDgk~tVFGkVv~G~eVld~I~~~~t~~gkp 163 (622)
++|.+|||.+|.+|||.|+|..+|+|+|||.|+|+||+|||||+....||||+|||||.||+||+||.+|++.++..|+|
T Consensus 206 tggksiygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsksgkp 285 (298)
T KOG0111|consen 206 TGGKSIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKSGKP 285 (298)
T ss_pred CCCcccccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCC
Q 006988 164 ASHVSSSEDSSD 175 (622)
Q Consensus 164 ~~~ikIsd~g~~ 175 (622)
...++|++|++-
T Consensus 286 ~qkv~i~~cge~ 297 (298)
T KOG0111|consen 286 QQKVKIVECGEI 297 (298)
T ss_pred ceEEEEEecccc
Confidence 999999999864
No 9
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-39 Score=292.68 Aligned_cols=150 Identities=49% Similarity=0.838 Sum_probs=140.6
Q ss_pred CCCeEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCCC
Q 006988 5 KNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGT 84 (622)
Q Consensus 5 ~np~V~fDtsigg~~~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g~ 84 (622)
.-|.|+|+|++| .|+||||-+.||+||.||.+|+ +.+||+|+.|||||++|||||||+ .+.|.
T Consensus 8 q~~~V~LeTsmG-----~i~~ElY~kHaP~TC~NF~eLa-----------rrgYYn~v~FHRii~DFmiQGGDP-TGTGR 70 (164)
T KOG0881|consen 8 QPPNVTLETSMG-----KITLELYWKHAPRTCQNFAELA-----------RRGYYNGVIFHRIIKDFMIQGGDP-TGTGR 70 (164)
T ss_pred CCCeEEEeeccc-----ceehhhhhhcCcHHHHHHHHHH-----------hcccccceeeeehhhhheeecCCC-CCCCC
Confidence 578999999988 9999999999999999999999 678999999999999999999998 58899
Q ss_pred CCCcccCCcccCC-CCCCCCCCCeEEEeccCCCCCCCceeEEeeccCCCCCCCceEEEEEecChHHHHHHHhcCCccC-c
Q 006988 85 GGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTVKK-K 162 (622)
Q Consensus 85 gg~si~g~~~~dE-~~~lkh~~~G~Vsma~sg~ds~GSqFFItL~d~p~LDgk~tVFGkVv~G~eVld~I~~~~t~~g-k 162 (622)
+|.+|||.+|.|| +..|+|..+|+|+|||.|||+|||||||||++.++|||+||+||+|+.||+|+..|..+.|+.. .
T Consensus 71 GGaSIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DR 150 (164)
T KOG0881|consen 71 GGASIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDR 150 (164)
T ss_pred CccccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCC
Confidence 9999999999999 6789999999999999999999999999999999999999999999999999999999998764 7
Q ss_pred CCccccccc
Q 006988 163 KASHVSSSE 171 (622)
Q Consensus 163 p~~~ikIsd 171 (622)
|+.+++|..
T Consensus 151 Pi~~~kIik 159 (164)
T KOG0881|consen 151 PIDEVKIIK 159 (164)
T ss_pred CccceeeEe
Confidence 777777754
No 10
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-37 Score=296.90 Aligned_cols=133 Identities=53% Similarity=0.854 Sum_probs=122.6
Q ss_pred EEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCCCCCCc
Q 006988 9 VFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGES 88 (622)
Q Consensus 9 V~fDtsigg~~~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g~gg~s 88 (622)
|.|+|+.| +|+||||+++||+||+||++|| +.+||+|+.|||||++|||||||+..+++.++.
T Consensus 2 v~~~t~~G-----~I~ieL~~~~aP~Tv~NF~~l~-----------~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~- 64 (158)
T COG0652 2 VILETNKG-----DITIELYPDKAPKTVANFLQLV-----------KEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGP- 64 (158)
T ss_pred ceeeccCC-----CEEEEECCCcCcHHHHHHHHHH-----------HcCCCCCceEEEeecCceeecCCCCCCCCCCCC-
Confidence 55666666 9999999999999999999999 567999999999999999999999888788887
Q ss_pred ccCCcccCCCCCCCCCC--CeEEEeccCC-CCCCCceeEEeeccCCCCCCCceEEEEEecChHHHHHHHhcCCcc
Q 006988 89 IYGGKFTDENFKLDHNG--PGILSMANSG-ANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTVK 160 (622)
Q Consensus 89 i~g~~~~dE~~~lkh~~--~G~Vsma~sg-~ds~GSqFFItL~d~p~LDgk~tVFGkVv~G~eVld~I~~~~t~~ 160 (622)
+..|++|++...|+. +|+|+||+.+ ||+++||||||+.++++||++|+|||+|++||+||++|+++.+..
T Consensus 65 --~~~f~~E~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~ 137 (158)
T COG0652 65 --GPPFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDD 137 (158)
T ss_pred --CCCCcccccccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccC
Confidence 478999988888877 9999999999 999999999999999999999999999999999999999987764
No 11
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=1.5e-36 Score=288.82 Aligned_cols=147 Identities=50% Similarity=0.824 Sum_probs=133.7
Q ss_pred EEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCCCCCCc
Q 006988 9 VFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGES 88 (622)
Q Consensus 9 V~fDtsigg~~~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g~gg~s 88 (622)
|.|+|+.| +|+||||+++||++|+||++||+ .+||+||.||||+++||||||++. +++.++..
T Consensus 3 v~l~T~~G-----~i~ieL~~~~aP~t~~nF~~L~~-----------~g~Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~ 65 (153)
T cd01928 3 VTLHTNLG-----DIKIELFCDDCPKACENFLALCA-----------SGYYNGCIFHRNIKGFMVQTGDPT-GTGKGGES 65 (153)
T ss_pred EEEEEccc-----cEEEEEcCCCCcHHHHHHHHHHh-----------cCccCCcEEEEeCCCCEEEccccC-CCCCCCCc
Confidence 78888766 99999999999999999999994 459999999999999999999974 56777888
Q ss_pred ccCCcccCCCC-CCCCCCCeEEEeccCCCCCCCceeEEeeccCCCCCCCceEEEEEecChHHHHHHHhcCCc-cCcCCcc
Q 006988 89 IYGGKFTDENF-KLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTV-KKKKASH 166 (622)
Q Consensus 89 i~g~~~~dE~~-~lkh~~~G~Vsma~sg~ds~GSqFFItL~d~p~LDgk~tVFGkVv~G~eVld~I~~~~t~-~gkp~~~ 166 (622)
+|+..|.+|.. .+.|+.+|+|+||+.++++++|||||+|.++++||++|+|||+|++|||||++|+.++++ .+.|..+
T Consensus 66 ~~~~~~~~e~~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~ 145 (153)
T cd01928 66 IWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEE 145 (153)
T ss_pred cCCCccccccccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCC
Confidence 89999999865 688989999999999999999999999999999999999999999999999999999985 5688888
Q ss_pred cccccC
Q 006988 167 VSSSED 172 (622)
Q Consensus 167 ikIsd~ 172 (622)
|+|.++
T Consensus 146 i~I~~~ 151 (153)
T cd01928 146 IRIKDV 151 (153)
T ss_pred eEEEEe
Confidence 888765
No 12
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=1.8e-36 Score=286.29 Aligned_cols=143 Identities=50% Similarity=0.855 Sum_probs=130.6
Q ss_pred EEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCCCCCCccc
Q 006988 11 LDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIY 90 (622)
Q Consensus 11 fDtsigg~~~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g~gg~si~ 90 (622)
|+|+.| +|+||||.++||++|+||++|| +.+||+++.||||+++||||||++. +++.++.++|
T Consensus 2 i~T~~G-----~i~ieL~~~~aP~t~~nF~~L~-----------~~g~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~ 64 (146)
T cd01922 2 LETTMG-----EITLELYWNHAPKTCKNFYELA-----------KRGYYNGTIFHRLIKDFMIQGGDPT-GTGRGGASIY 64 (146)
T ss_pred eEeccc-----cEEEEEcCCCCcHHHHHHHHHH-----------hcCCcCCcEEEEEcCCcEEEecccC-CCCCCccccc
Confidence 566655 9999999999999999999999 4569999999999999999999974 5667788899
Q ss_pred CCcccCC-CCCCCCCCCeEEEeccCCCCCCCceeEEeeccCCCCCCCceEEEEEecChHHHHHHHhcCCccCcCCccccc
Q 006988 91 GGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTVKKKKASHVSS 169 (622)
Q Consensus 91 g~~~~dE-~~~lkh~~~G~Vsma~sg~ds~GSqFFItL~d~p~LDgk~tVFGkVv~G~eVld~I~~~~t~~gkp~~~ikI 169 (622)
+..|.+| +..++|+.+|+|+|++.+++++++||||+|+++++||++|||||+|++|||||++|+.++++.++|...|+|
T Consensus 65 ~~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~P~~~I~I 144 (146)
T cd01922 65 GKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQTDRPIDEVKI 144 (146)
T ss_pred CCCcccccccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCCCCCcCCCeEE
Confidence 9999998 457899999999999999999999999999999999999999999999999999999999987788888877
Q ss_pred c
Q 006988 170 S 170 (622)
Q Consensus 170 s 170 (622)
.
T Consensus 145 ~ 145 (146)
T cd01922 145 L 145 (146)
T ss_pred e
Confidence 5
No 13
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=3.5e-36 Score=284.82 Aligned_cols=143 Identities=50% Similarity=0.777 Sum_probs=129.7
Q ss_pred EEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCCCCCCccc
Q 006988 11 LDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIY 90 (622)
Q Consensus 11 fDtsigg~~~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g~gg~si~ 90 (622)
|+|+.| +|+||||.++||++|+||++||+ .+||+||.||||+++||||||++. +++.++.++|
T Consensus 2 i~T~~G-----~i~ieL~~~~aP~t~~nF~~L~~-----------~g~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~ 64 (148)
T cd01927 2 IHTTKG-----DIHIRLFPEEAPKTVENFTTHAR-----------NGYYNNTIFHRVIKGFMIQTGDPT-GDGTGGESIW 64 (148)
T ss_pred eEeccc-----cEEEEEeCCCCcHHHHHHHHHhh-----------cCCcCCcEEEEEcCCcEEEecccC-CCCCCCCccc
Confidence 566655 99999999999999999999994 469999999999999999999974 6678888899
Q ss_pred CCcccCCCC-CCCCCCCeEEEeccCCCCCCCceeEEeeccCCCCCCCceEEEEEecChHHHHHHHhcCCc-cCcCCcccc
Q 006988 91 GGKFTDENF-KLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTV-KKKKASHVS 168 (622)
Q Consensus 91 g~~~~dE~~-~lkh~~~G~Vsma~sg~ds~GSqFFItL~d~p~LDgk~tVFGkVv~G~eVld~I~~~~t~-~gkp~~~ik 168 (622)
+..|.+|.. .+.|..+|+|+||+.++++++|||||+|.++++||++|+|||+|++|||||++|+.++++ .++|..+|+
T Consensus 65 ~~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~ 144 (148)
T cd01927 65 GKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIK 144 (148)
T ss_pred CCccccccccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeE
Confidence 999999965 789999999999999999999999999999999999999999999999999999999985 468888877
Q ss_pred cc
Q 006988 169 SS 170 (622)
Q Consensus 169 Is 170 (622)
|.
T Consensus 145 I~ 146 (148)
T cd01927 145 II 146 (148)
T ss_pred EE
Confidence 64
No 14
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=4.1e-36 Score=287.51 Aligned_cols=149 Identities=50% Similarity=0.830 Sum_probs=135.8
Q ss_pred eEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCCCCCC
Q 006988 8 LVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGE 87 (622)
Q Consensus 8 ~V~fDtsigg~~~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g~gg~ 87 (622)
+|.|+|+.| +|+||||.++||+||+||++||+ .+||+||.||||+++||||||++. +++.++.
T Consensus 1 ~v~~~T~~G-----~i~ieL~~~~aP~t~~nF~~L~~-----------~g~Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~ 63 (159)
T cd01923 1 YVRLHTNKG-----DLNLELHCDKAPKACENFIKLCK-----------KGYYDGTIFHRSIRNFMIQGGDPT-GTGRGGE 63 (159)
T ss_pred CEEEEEccc-----cEEEEEeCCCChHHHHHHHHHHh-----------cCccCCcEEEEEeCCcEEEecccC-CCCCCCc
Confidence 478888766 99999999999999999999994 569999999999999999999974 6677888
Q ss_pred cccCCcccCCC-CCCCCCCCeEEEeccCCCCCCCceeEEeeccCCCCCCCceEEEEEecChHHHHHHHhcCCc-cCcCCc
Q 006988 88 SIYGGKFTDEN-FKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTV-KKKKAS 165 (622)
Q Consensus 88 si~g~~~~dE~-~~lkh~~~G~Vsma~sg~ds~GSqFFItL~d~p~LDgk~tVFGkVv~G~eVld~I~~~~t~-~gkp~~ 165 (622)
++|+..|.+|. ..+.|+.+|+|+||+.+++++++||||+|+++++||++|+|||+|++||+||++|+.++++ .+.|..
T Consensus 64 ~~~g~~~~~E~~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~ 143 (159)
T cd01923 64 SIWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKE 143 (159)
T ss_pred cccCCccCcccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCC
Confidence 89999999884 5688999999999999999999999999999999999999999999999999999999874 568888
Q ss_pred ccccccCC
Q 006988 166 HVSSSEDS 173 (622)
Q Consensus 166 ~ikIsd~g 173 (622)
+|.|.+|.
T Consensus 144 ~i~I~~~~ 151 (159)
T cd01923 144 EIKIEDTS 151 (159)
T ss_pred CeEEEEeE
Confidence 89888875
No 15
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=6.8e-35 Score=280.85 Aligned_cols=146 Identities=38% Similarity=0.636 Sum_probs=127.5
Q ss_pred EEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCCCCCCccc
Q 006988 11 LDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIY 90 (622)
Q Consensus 11 fDtsigg~~~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g~gg~si~ 90 (622)
|+|+.| +|+||||.++||+||+||++||+ .+||+||.||||+++||||||++. +++.++..++
T Consensus 2 l~Ts~G-----~i~ieL~~~~aP~t~~nF~~L~~-----------~~~Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~ 64 (166)
T cd01921 2 LETTLG-----DLVIDLFTDECPLACLNFLKLCK-----------LKYYNFCLFYNVQKDFIAQTGDPT-GTGAGGESIY 64 (166)
T ss_pred cEeccC-----CEEEEEcCCCCCHHHHHHHHHHh-----------cCCcCCCEEEEEeCCceEEECCcC-CCCCCCcccc
Confidence 667666 99999999999999999999994 459999999999999999999985 5566666665
Q ss_pred C-------CcccCCC-CCCCCCCCeEEEeccCCCCCCCceeEEeecc-CCCCCCCceEEEEEecChHHHHHHHhcCCc-c
Q 006988 91 G-------GKFTDEN-FKLDHNGPGILSMANSGANTNGSQFFITFRR-QHHLDGKHVVFGKVVKGLNIVKKIEQVGTV-K 160 (622)
Q Consensus 91 g-------~~~~dE~-~~lkh~~~G~Vsma~sg~ds~GSqFFItL~d-~p~LDgk~tVFGkVv~G~eVld~I~~~~t~-~ 160 (622)
+ ..+.+|. ..++|+.+|+|+||+.++++++|||||||.+ +++||++|||||+||+|||||++|+.++++ .
T Consensus 65 ~~~~~~~~~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~ 144 (166)
T cd01921 65 SQLYGRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDD 144 (166)
T ss_pred cccccccCcccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCC
Confidence 4 2466664 4789999999999999999999999999975 799999999999999999999999999885 4
Q ss_pred CcCCcccccccCC
Q 006988 161 KKKASHVSSSEDS 173 (622)
Q Consensus 161 gkp~~~ikIsd~g 173 (622)
+.|..+|+|..|.
T Consensus 145 ~~P~~~i~I~~~~ 157 (166)
T cd01921 145 GRPLKDIRIKHTH 157 (166)
T ss_pred CCCCCCeEEEEEE
Confidence 6888888888775
No 16
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-35 Score=281.73 Aligned_cols=162 Identities=62% Similarity=1.077 Sum_probs=155.4
Q ss_pred CCCeEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEe---ecCceEEecCCCCC
Q 006988 5 KNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRI---IKGFMIQGGDFSKG 81 (622)
Q Consensus 5 ~np~V~fDtsigg~~~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RV---ipg~vIQgGd~~~g 81 (622)
.||.||||++++++++|+|+|+||.|..|+|++||.+||||++|.+ |++..||++ +++||+||||++..
T Consensus 2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~--------yk~s~fhr~~~~~~~fm~qggDft~h 73 (167)
T KOG0865|consen 2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFG--------YKGSCFHRLIPIIPGFMCQGGDFTCH 73 (167)
T ss_pred CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccc--------cccchhhhccccccceeeccCccccc
Confidence 4899999999999999999999999999999999999999987765 999999993 44799999999999
Q ss_pred CCCCCCcccCCcccCCCCCCCCCCCeEEEeccCCCCCCCceeEEeeccCCCCCCCceEEEEEecChHHHHHHHhcCCccC
Q 006988 82 NGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTVKK 161 (622)
Q Consensus 82 ~g~gg~si~g~~~~dE~~~lkh~~~G~Vsma~sg~ds~GSqFFItL~d~p~LDgk~tVFGkVv~G~eVld~I~~~~t~~g 161 (622)
+++++.+||+.+|.||++.|+|..+|+|+|||.|||++|+||||+++...||||+|||||+|++||+|+++|+..+...+
T Consensus 74 ngtggkSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~g 153 (167)
T KOG0865|consen 74 NGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRNG 153 (167)
T ss_pred CCccceEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccCCC
Q 006988 162 KKASHVSSSEDSS 174 (622)
Q Consensus 162 kp~~~ikIsd~g~ 174 (622)
++...|.|+||+.
T Consensus 154 k~~~~i~i~dcg~ 166 (167)
T KOG0865|consen 154 KTSKKITIADCGQ 166 (167)
T ss_pred cccccEEEecCCc
Confidence 9999999999984
No 17
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=4.6e-34 Score=280.91 Aligned_cols=151 Identities=34% Similarity=0.483 Sum_probs=128.8
Q ss_pred CCCCeEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCC
Q 006988 4 KKNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNG 83 (622)
Q Consensus 4 ~~np~V~fDtsigg~~~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g 83 (622)
..++.|.|+|+.| +|+||||.++||+||+||++|| +.+||+|+.||||+++||||||++....+
T Consensus 26 ~~~~~v~l~T~~G-----~i~ieL~~~~aP~t~~NF~~L~-----------~~g~Ydg~~FhRvi~~f~iQgG~~~~~~~ 89 (190)
T PRK10903 26 KGDPHVLLTTSAG-----NIELELNSQKAPVSVKNFVDYV-----------NSGFYNNTTFHRVIPGFMIQGGGFTEQMQ 89 (190)
T ss_pred CCCcEEEEEeccc-----cEEEEEeCCCCcHHHHHHHHHH-----------hcCCcCCcEEEEEeCCceEEeCCcCCCCC
Confidence 4678899999877 9999999999999999999999 55699999999999999999999754321
Q ss_pred CCCCcccCCcccCCCCCCCCCCCeEEEeccCC-CCCCCceeEEeeccCCCCCC-----CceEEEEEecChHHHHHHHhcC
Q 006988 84 TGGESIYGGKFTDENFKLDHNGPGILSMANSG-ANTNGSQFFITFRRQHHLDG-----KHVVFGKVVKGLNIVKKIEQVG 157 (622)
Q Consensus 84 ~gg~si~g~~~~dE~~~lkh~~~G~Vsma~sg-~ds~GSqFFItL~d~p~LDg-----k~tVFGkVv~G~eVld~I~~~~ 157 (622)
...++..|.+|.....|+.+|+|+||+.+ +++++|||||+|.++++||+ +|||||+|++|||||++|+.++
T Consensus 90 ---~~~~~~~~~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~ 166 (190)
T PRK10903 90 ---QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVP 166 (190)
T ss_pred ---CCCCCCcccCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCC
Confidence 12335567777655667789999999865 89999999999999999984 8999999999999999999999
Q ss_pred Ccc-----CcCCcccccccCC
Q 006988 158 TVK-----KKKASHVSSSEDS 173 (622)
Q Consensus 158 t~~-----gkp~~~ikIsd~g 173 (622)
++. +.|...+.|.+|.
T Consensus 167 ~~~~~~~~~~P~~~v~I~~~~ 187 (190)
T PRK10903 167 THDVGPYQNVPSKPVVILSAK 187 (190)
T ss_pred CCCCCCCCCcccCCeEEEEEE
Confidence 864 5677788887774
No 18
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-35 Score=303.16 Aligned_cols=151 Identities=50% Similarity=0.811 Sum_probs=138.9
Q ss_pred CCCCeEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCC
Q 006988 4 KKNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNG 83 (622)
Q Consensus 4 ~~np~V~fDtsigg~~~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g 83 (622)
+++-+|-|.|+.| .|.||||.|.||.+|+||+.|| +.+||+|+.|||.|.||||||||+ .|.|
T Consensus 275 Kkkgyvrl~Tn~G-----~lNlELhcd~~P~aceNFI~lc-----------~~gYYnnt~FHRsIrnFmiQGGDP-TGTG 337 (518)
T KOG0883|consen 275 KKKGYVRLVTNHG-----PLNLELHCDYAPRACENFITLC-----------KNGYYNNTIFHRSIRNFMIQGGDP-TGTG 337 (518)
T ss_pred cccceEEEeccCC-----ceeeEeecCcchHHHHHHHHHH-----------hcccccchHHHHHHHHHeeeCCCC-CCCC
Confidence 4566777777766 9999999999999999999999 678999999999999999999998 5889
Q ss_pred CCCCcccCCcccCCC-CCCCCCCCeEEEeccCCCCCCCceeEEeeccCCCCCCCceEEEEEecChHHHHHHHhcCCccC-
Q 006988 84 TGGESIYGGKFTDEN-FKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTVKK- 161 (622)
Q Consensus 84 ~gg~si~g~~~~dE~-~~lkh~~~G~Vsma~sg~ds~GSqFFItL~d~p~LDgk~tVFGkVv~G~eVld~I~~~~t~~g- 161 (622)
.||++|+|..|.||. ..|.|+.+|+|+|||.|+|+|||||||++..+.+||++|||||+||.|+++|.+|+.++++.+
T Consensus 338 ~GGeSiWgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~D 417 (518)
T KOG0883|consen 338 RGGESIWGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKD 417 (518)
T ss_pred CCCccccCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCC
Confidence 999999999999994 689999999999999999999999999999999999999999999999999999999999765
Q ss_pred cCCccccccc
Q 006988 162 KKASHVSSSE 171 (622)
Q Consensus 162 kp~~~ikIsd 171 (622)
.|..+|+|.+
T Consensus 418 rP~e~I~i~~ 427 (518)
T KOG0883|consen 418 RPKEEIKIED 427 (518)
T ss_pred CcccceEEee
Confidence 6777776644
No 19
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=8e-34 Score=274.80 Aligned_cols=153 Identities=40% Similarity=0.678 Sum_probs=136.4
Q ss_pred CCCCeEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCC
Q 006988 4 KKNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNG 83 (622)
Q Consensus 4 ~~np~V~fDtsigg~~~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g 83 (622)
+..-.|.|+|+.| +|+||||.++||+||+||+.||+ .+||+||.||||+++||||||++. +++
T Consensus 3 ~~~~~v~i~Ts~G-----~i~ieL~~~~~P~t~~nF~~L~~-----------~~~Y~~~~f~Rvi~~f~iQgGd~~-~~g 65 (171)
T cd01925 3 PTTGKVILKTTAG-----DIDIELWSKEAPKACRNFIQLCL-----------EGYYDNTIFHRVVPGFIIQGGDPT-GTG 65 (171)
T ss_pred CcccEEEEEEccc-----cEEEEEeCCCChHHHHHHHHHHh-----------cCCCCCCEEEEEcCCcEEEccccC-CCC
Confidence 3456799999877 99999999999999999999994 469999999999999999999975 667
Q ss_pred CCCCcccCCcccCCCC-CCCCCCCeEEEeccCCCCCCCceeEEeeccCCCCCCCceEEEEEe-cChHHHHHHHhcCCc-c
Q 006988 84 TGGESIYGGKFTDENF-KLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVV-KGLNIVKKIEQVGTV-K 160 (622)
Q Consensus 84 ~gg~si~g~~~~dE~~-~lkh~~~G~Vsma~sg~ds~GSqFFItL~d~p~LDgk~tVFGkVv-~G~eVld~I~~~~t~-~ 160 (622)
.++.++|+..|.+|.. .+.|+.+|+|+||+.+++++++||||+|+++++||++|||||+|+ ++|++|++|+.+.++ .
T Consensus 66 ~g~~s~~g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~ 145 (171)
T cd01925 66 TGGESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKD 145 (171)
T ss_pred ccCcccCCCccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCC
Confidence 8888999999998854 678999999999999999999999999999999999999999999 467889999999886 4
Q ss_pred CcCCcccccccCC
Q 006988 161 KKKASHVSSSEDS 173 (622)
Q Consensus 161 gkp~~~ikIsd~g 173 (622)
+.|...+.|.+|+
T Consensus 146 ~~P~~~i~I~~~~ 158 (171)
T cd01925 146 ERPVYPPKITSVE 158 (171)
T ss_pred CCcCCCeEEEEEE
Confidence 6788888887774
No 20
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=8.2e-34 Score=273.14 Aligned_cols=146 Identities=34% Similarity=0.539 Sum_probs=121.0
Q ss_pred eEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCCCCCC
Q 006988 8 LVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGE 87 (622)
Q Consensus 8 ~V~fDtsigg~~~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g~gg~ 87 (622)
.|.|+|+.| +|+||||.++||+||+||++|| +.+||+||.||||+++||||||++..+.+.
T Consensus 1 ~v~~~T~~G-----~i~ieL~~~~aP~t~~nF~~L~-----------~~g~Yd~~~fhRvi~~f~iQgGd~~~~~~~--- 61 (164)
T PRK10791 1 MVTFHTNHG-----DIVIKTFDDKAPETVKNFLDYC-----------REGFYNNTIFHRVINGFMIQGGGFEPGMKQ--- 61 (164)
T ss_pred CEEEEEccc-----cEEEEEeCCCCcHHHHHHHHHH-----------hcCCcCCcEEEEEecCcEEEeCCcCCCCCc---
Confidence 367888766 9999999999999999999999 456999999999999999999997544322
Q ss_pred cccCCcccCCCCCCCCCCCeEEEeccCC-CCCCCceeEEeeccCCCCC-------C-CceEEEEEecChHHHHHHHhcCC
Q 006988 88 SIYGGKFTDENFKLDHNGPGILSMANSG-ANTNGSQFFITFRRQHHLD-------G-KHVVFGKVVKGLNIVKKIEQVGT 158 (622)
Q Consensus 88 si~g~~~~dE~~~lkh~~~G~Vsma~sg-~ds~GSqFFItL~d~p~LD-------g-k~tVFGkVv~G~eVld~I~~~~t 158 (622)
..++..|.+|.....|+.+|+|+||+.+ +++++|||||+|.++++|| + +|||||+|++|||||++|+.+++
T Consensus 62 ~~~~~~~~~e~~~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~ 141 (164)
T PRK10791 62 KATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVAT 141 (164)
T ss_pred CCCCCCcCCcccccccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcC
Confidence 2235567777443344579999999875 8999999999999988776 3 79999999999999999999988
Q ss_pred cc-----CcCCcccccccC
Q 006988 159 VK-----KKKASHVSSSED 172 (622)
Q Consensus 159 ~~-----gkp~~~ikIsd~ 172 (622)
+. +.|..+|+|..+
T Consensus 142 ~~~~~~~~~P~~~v~I~~~ 160 (164)
T PRK10791 142 GRSGMHQDVPKEDVIIESV 160 (164)
T ss_pred CCCCccCCCcCCCeEEEEE
Confidence 64 578888877655
No 21
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-34 Score=258.22 Aligned_cols=144 Identities=50% Similarity=0.800 Sum_probs=130.5
Q ss_pred EEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCCCCCCc
Q 006988 9 VFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGES 88 (622)
Q Consensus 9 V~fDtsigg~~~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g~gg~s 88 (622)
|.|.|.+| +|-||||.+.+|++|+||+.||. ..||++|.||+-+++||||+|++ ...|.||.+
T Consensus 3 vtlht~~g-----dikiev~~e~tpktce~~l~~~~-----------~~~~n~~~~~~~~~~f~v~~~~~-~~tgrgg~s 65 (161)
T KOG0884|consen 3 VTLHTDVG-----DIKIEVFCERTPKTCENFLALCA-----------SDYYNGCIFHRNIKGFMVQTGDP-THTGRGGNS 65 (161)
T ss_pred EEEeeccC-----cEEEEEEecCChhHHHHHHHHhh-----------hhhccceeecCCCCCcEEEeCCC-CCCCCCCcc
Confidence 56677666 99999999999999999999993 45999999999999999999998 467889999
Q ss_pred ccCCcccCCCC-CCCCCCCeEEEeccCCCCCCCceeEEeeccCCCCCCCceEEEEEecChHHHHHHHhcCCccC--cCCc
Q 006988 89 IYGGKFTDENF-KLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTVKK--KKAS 165 (622)
Q Consensus 89 i~g~~~~dE~~-~lkh~~~G~Vsma~sg~ds~GSqFFItL~d~p~LDgk~tVFGkVv~G~eVld~I~~~~t~~g--kp~~ 165 (622)
|+|.+|++|.. -|+|+.+|+|+|||.|||++++|||||.+.++|||-+|||||+||+|+|+|+.|+.++++.. .|+.
T Consensus 66 iwg~~fede~~~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~ 145 (161)
T KOG0884|consen 66 IWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLN 145 (161)
T ss_pred ccCCcchHHHHHHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccch
Confidence 99999999964 69999999999999999999999999999999999999999999999999999999998765 5555
Q ss_pred cccc
Q 006988 166 HVSS 169 (622)
Q Consensus 166 ~ikI 169 (622)
.+.|
T Consensus 146 ~~~i 149 (161)
T KOG0884|consen 146 DVHI 149 (161)
T ss_pred heee
Confidence 5444
No 22
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=3.1e-33 Score=266.67 Aligned_cols=140 Identities=34% Similarity=0.515 Sum_probs=117.1
Q ss_pred EEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCCCCCCccc
Q 006988 11 LDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIY 90 (622)
Q Consensus 11 fDtsigg~~~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g~gg~si~ 90 (622)
|+|+.| +|+||||.++||+||+||++|| +.+||+||.||||+++||||||++....+. ..+
T Consensus 2 l~T~~G-----~i~ieL~~~~aP~t~~nF~~L~-----------~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~ 62 (155)
T cd01920 2 FQTSLG-----DIVVELYDDKAPITVENFLAYV-----------RKGFYDNTIFHRVISGFVIQGGGFTPDLAQ---KET 62 (155)
T ss_pred cEecce-----eEEEEEeCCCCcHHHHHHHHHH-----------hcCCCCCCEEEEEeCCcEEEeCCCCCCCCc---ccc
Confidence 456544 9999999999999999999999 456999999999999999999997654322 233
Q ss_pred CCcccCCCCCCCCCCCeEEEeccCC-CCCCCceeEEeeccCCCCCC-----CceEEEEEecChHHHHHHHhcCCccC---
Q 006988 91 GGKFTDENFKLDHNGPGILSMANSG-ANTNGSQFFITFRRQHHLDG-----KHVVFGKVVKGLNIVKKIEQVGTVKK--- 161 (622)
Q Consensus 91 g~~~~dE~~~lkh~~~G~Vsma~sg-~ds~GSqFFItL~d~p~LDg-----k~tVFGkVv~G~eVld~I~~~~t~~g--- 161 (622)
+..+.+|.....|+.+|+|+||+.+ +++++|||||+|.++++||+ +|||||+|++|||||++|+.++++.+
T Consensus 63 ~~~~~~e~~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~ 142 (155)
T cd01920 63 LKPIKNEAGNGLSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSY 142 (155)
T ss_pred CCcccCcccccccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCc
Confidence 5567777665566789999999865 89999999999999999995 79999999999999999999999653
Q ss_pred --cCCccccc
Q 006988 162 --KKASHVSS 169 (622)
Q Consensus 162 --kp~~~ikI 169 (622)
.|...|.|
T Consensus 143 ~~~p~~~v~i 152 (155)
T cd01920 143 QDVPVQDVII 152 (155)
T ss_pred CCCcCCCeEE
Confidence 45555544
No 23
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-34 Score=301.50 Aligned_cols=147 Identities=48% Similarity=0.747 Sum_probs=136.0
Q ss_pred eEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCCCCCC
Q 006988 8 LVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGE 87 (622)
Q Consensus 8 ~V~fDtsigg~~~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g~gg~ 87 (622)
-+.|.|+.| +|.|.||+++||+||+||...| ..|||+|.+|||||+|||||+||++ |+|+||+
T Consensus 406 ~aiihtt~g-----di~~kl~p~ecpktvenf~th~-----------rngyy~~~~fhriik~fmiqtgdp~-g~gtgge 468 (558)
T KOG0882|consen 406 AAIIHTTQG-----DIHIKLYPEECPKTVENFTTHS-----------RNGYYDNHTFHRIIKGFMIQTGDPL-GDGTGGE 468 (558)
T ss_pred ceEEEeccc-----ceEEEecccccchhhhhhhccc-----------cCccccCcchHHhhhhheeecCCCC-CCCCCCc
Confidence 466777766 9999999999999999999999 6779999999999999999999984 8999999
Q ss_pred cccCCcccCC-CCCCCCCCCeEEEeccCCCCCCCceeEEeeccCCCCCCCceEEEEEecChHHHHHHHhcCCcc-CcCCc
Q 006988 88 SIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTVK-KKKAS 165 (622)
Q Consensus 88 si~g~~~~dE-~~~lkh~~~G~Vsma~sg~ds~GSqFFItL~d~p~LDgk~tVFGkVv~G~eVld~I~~~~t~~-gkp~~ 165 (622)
+|+|..|+|| ++.|.|+.+.+|+|||.|+|+||||||||+.+.|||||+|||||+|+.||+||+.|+++.|++ +.|..
T Consensus 469 siwg~dfedefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e 548 (558)
T KOG0882|consen 469 SIWGKDFEDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYE 548 (558)
T ss_pred ccccccchhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCC
Confidence 9999999999 568999999999999999999999999999999999999999999999999999999999965 47777
Q ss_pred cccccc
Q 006988 166 HVSSSE 171 (622)
Q Consensus 166 ~ikIsd 171 (622)
+++|.+
T Consensus 549 ~v~iin 554 (558)
T KOG0882|consen 549 DVKIIN 554 (558)
T ss_pred ceeEEE
Confidence 776653
No 24
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=99.98 E-value=4e-32 Score=254.46 Aligned_cols=143 Identities=56% Similarity=0.829 Sum_probs=125.3
Q ss_pred EEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCCCCCCcc
Q 006988 10 FLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESI 89 (622)
Q Consensus 10 ~fDtsigg~~~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g~gg~si 89 (622)
+|+|+.| +|+||||.++||++|+||+.||++ +||+||.||||+++++||||++......+ ..
T Consensus 1 ~~~T~~G-----~i~IeL~~~~~P~~~~nF~~l~~~-----------~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~ 62 (146)
T cd00317 1 TLDTTKG-----RIVIELYGDEAPKTVENFLSLARG-----------GFYDGTTFHRVIPGFMIQGGDPTGTGGGG--SG 62 (146)
T ss_pred CeEeccC-----cEEEEEcCCCChHHHHHHHHHHhc-----------CCcCCCEEEEEeCCCeEEECCCCCCCCCC--Cc
Confidence 3666665 999999999999999999999953 48999999999999999999986554322 45
Q ss_pred cCCcccCCCCCCC-CCCCeEEEeccCCCCCCCceeEEeeccCCCCCCCceEEEEEecChHHHHHHHhcCCc-cCcCCccc
Q 006988 90 YGGKFTDENFKLD-HNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTV-KKKKASHV 167 (622)
Q Consensus 90 ~g~~~~dE~~~lk-h~~~G~Vsma~sg~ds~GSqFFItL~d~p~LDgk~tVFGkVv~G~eVld~I~~~~t~-~gkp~~~i 167 (622)
++..+++|..... |+.+|+|+|++.+++++++||||+|.++++||++|+|||+|++||+||++|+.++++ .+.|..+|
T Consensus 63 ~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i 142 (146)
T cd00317 63 PGYKFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPV 142 (146)
T ss_pred CCCccCCccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCce
Confidence 5678888866554 889999999999999999999999999999999999999999999999999999997 67888888
Q ss_pred ccc
Q 006988 168 SSS 170 (622)
Q Consensus 168 kIs 170 (622)
+|+
T Consensus 143 ~I~ 145 (146)
T cd00317 143 TIS 145 (146)
T ss_pred EEe
Confidence 775
No 25
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=6.1e-33 Score=288.16 Aligned_cols=144 Identities=42% Similarity=0.700 Sum_probs=131.9
Q ss_pred CCCCeEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCC
Q 006988 4 KKNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNG 83 (622)
Q Consensus 4 ~~np~V~fDtsigg~~~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g 83 (622)
...-+|.|.|+.| +|.||||+.+||++|.||++|| -.|||+|+.||||+|||+||||++ +++|
T Consensus 10 ~ttgkvil~TT~G-----~I~iELW~kE~P~acrnFiqKO-----------Gegyy~nt~fhrlvp~f~~Qggdp-~~~g 72 (439)
T KOG0885|consen 10 PTTGKVILKTTKG-----DIDIELWAKECPKACRNFIQLC-----------LEGYYDNTEFHRLVPGFLVQGGDP-TGTG 72 (439)
T ss_pred CccceEEEEeccC-----ceeeeehhhhhhHHHHHHHHHH-----------HhccccCceeeeeccchhcccCCC-CCCC
Confidence 3556899999988 9999999999999999999999 456999999999999999999998 6889
Q ss_pred CCCCcccCCcccCC-CCCCCCCCCeEEEeccCCCCCCCceeEEeeccCCCCCCCceEEEEEe-cChHHHHHHHhcCCccC
Q 006988 84 TGGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVV-KGLNIVKKIEQVGTVKK 161 (622)
Q Consensus 84 ~gg~si~g~~~~dE-~~~lkh~~~G~Vsma~sg~ds~GSqFFItL~d~p~LDgk~tVFGkVv-~G~eVld~I~~~~t~~g 161 (622)
+||++|||..|.+| ++.|.++.+|+|+||+.+.+.||+||||||+++++|+++|||||+|+ +-+..+-.|..+.++.+
T Consensus 73 tGgesiyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~ 152 (439)
T KOG0885|consen 73 TGGESIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDAD 152 (439)
T ss_pred CCccccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccc
Confidence 99999999999999 67899999999999999999999999999999999999999999999 67888888988888744
Q ss_pred -cCC
Q 006988 162 -KKA 164 (622)
Q Consensus 162 -kp~ 164 (622)
.|.
T Consensus 153 ~Rp~ 156 (439)
T KOG0885|consen 153 DRPV 156 (439)
T ss_pred cCCC
Confidence 443
No 26
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=99.98 E-value=2.4e-32 Score=258.18 Aligned_cols=149 Identities=49% Similarity=0.767 Sum_probs=127.7
Q ss_pred EEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCCCCCC-c
Q 006988 10 FLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGE-S 88 (622)
Q Consensus 10 ~fDtsigg~~~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g~gg~-s 88 (622)
||+|++++ +|+|+||||.++||++|+||++||+ .++|+||.||+|+++++||+|++......+.. .
T Consensus 1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~-----------~~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~ 67 (155)
T PF00160_consen 1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCT-----------SGFYDGTKFHRIIPNFVIQGGDPTGNGGYGREDS 67 (155)
T ss_dssp EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHH-----------TTSSTTEBEEEEETTTEEEESSTTTSSSSTSEEB
T ss_pred CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhc-----------ccccCCceeecccccceeeeeeccCCCCcccccc
Confidence 78888866 8999999999999999999999995 34899999999999999999998655431111 2
Q ss_pred ccCCcccCCCC--CCCCCCCeEEEeccCC--CCCCCceeEEeeccCCCCCCCceEEEEEecChHHHHHHHhcCCccCcCC
Q 006988 89 IYGGKFTDENF--KLDHNGPGILSMANSG--ANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTVKKKKA 164 (622)
Q Consensus 89 i~g~~~~dE~~--~lkh~~~G~Vsma~sg--~ds~GSqFFItL~d~p~LDgk~tVFGkVv~G~eVld~I~~~~t~~gkp~ 164 (622)
..+..+++|.. .+.| .+|+|+|++.+ ++++++||||+|.++++||++|+|||+|++||+||++|+.++++. .|.
T Consensus 68 ~~~~~~~~E~~~~~~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~-~p~ 145 (155)
T PF00160_consen 68 TGGEPIPDEFNPSLLKH-RRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE-RPK 145 (155)
T ss_dssp TTBSCBSSSGBTTSSSS-STTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT-EBS
T ss_pred cCccccccccccccccc-cceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC-ccC
Confidence 23345778863 4555 89999999876 788999999999999999999999999999999999999998888 888
Q ss_pred cccccccCC
Q 006988 165 SHVSSSEDS 173 (622)
Q Consensus 165 ~~ikIsd~g 173 (622)
.+|.|.+|+
T Consensus 146 ~~v~I~~cg 154 (155)
T PF00160_consen 146 QDVTISSCG 154 (155)
T ss_dssp STEEEEEEE
T ss_pred CCeEEEEeE
Confidence 999999886
No 27
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=99.97 E-value=1.6e-31 Score=259.91 Aligned_cols=127 Identities=35% Similarity=0.533 Sum_probs=107.8
Q ss_pred eeeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCC---------------
Q 006988 19 PVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNG--------------- 83 (622)
Q Consensus 19 ~~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g--------------- 83 (622)
..|+|+||||++.||+||+||+.|| +.+||++|.||||+++||||||++...+.
T Consensus 5 ~~G~i~ieL~~~~aP~t~~NF~~L~-----------~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~ 73 (176)
T cd01924 5 DNGTITIVLDGYNAPVTAGNFVDLV-----------ERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPL 73 (176)
T ss_pred ccceEEEEEcCCCCCHHHHHHHHHH-----------HhCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccc
Confidence 4579999999999999999999999 56699999999999999999999864321
Q ss_pred -----CCCCcccCCcc-----cCCCCCCCCCCCeEEEeccCC--CCCCCceeEEeec-------cCCCCCCCceEEEEEe
Q 006988 84 -----TGGESIYGGKF-----TDENFKLDHNGPGILSMANSG--ANTNGSQFFITFR-------RQHHLDGKHVVFGKVV 144 (622)
Q Consensus 84 -----~gg~si~g~~~-----~dE~~~lkh~~~G~Vsma~sg--~ds~GSqFFItL~-------d~p~LDgk~tVFGkVv 144 (622)
..+..+|+..+ .++++.+.|+.+|+|+||+.+ ++++++||||+|. ++++||++|||||+|+
T Consensus 74 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~Vv 153 (176)
T cd01924 74 EIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVT 153 (176)
T ss_pred eecccCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEe
Confidence 12334555444 245677888899999999987 6999999999998 7899999999999999
Q ss_pred cChHHHHHHHhc
Q 006988 145 KGLNIVKKIEQV 156 (622)
Q Consensus 145 ~G~eVld~I~~~ 156 (622)
+|||||++|+..
T Consensus 154 eG~dvl~~I~~g 165 (176)
T cd01924 154 DGLDILRELKVG 165 (176)
T ss_pred cCHHHHHhhcCC
Confidence 999999999643
No 28
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-30 Score=269.52 Aligned_cols=149 Identities=40% Similarity=0.653 Sum_probs=133.3
Q ss_pred eEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCCCCCC
Q 006988 8 LVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGE 87 (622)
Q Consensus 8 ~V~fDtsigg~~~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g~gg~ 87 (622)
-|+|+|++| +|||+||.+++|.+|.|||+|| +..||+.|.||.|..+|++|.||++ |+|.||.
T Consensus 2 sVlieTtlG-----DlvIDLf~~erP~~clNFLKLC-----------k~KYYN~clfh~vq~~f~aQTGDPt-GtG~GG~ 64 (479)
T KOG0415|consen 2 SVLIETTLG-----DLVIDLFVKERPRTCLNFLKLC-----------KIKYYNFCLFHTVQRDFTAQTGDPT-GTGDGGE 64 (479)
T ss_pred cEEEEeecc-----cEEeeeecccCcHHHHHHHHHH-----------hHhhcccceeeeccccceeecCCCC-CCCCCcc
Confidence 488999987 9999999999999999999999 7889999999999999999999985 6899999
Q ss_pred cccCCc-------ccCC-CCCCCCCCCeEEEeccCCCCCCCceeEEeeccC-CCCCCCceEEEEEecChHHHHHHHhcCC
Q 006988 88 SIYGGK-------FTDE-NFKLDHNGPGILSMANSGANTNGSQFFITFRRQ-HHLDGKHVVFGKVVKGLNIVKKIEQVGT 158 (622)
Q Consensus 88 si~g~~-------~~dE-~~~lkh~~~G~Vsma~sg~ds~GSqFFItL~d~-p~LDgk~tVFGkVv~G~eVld~I~~~~t 158 (622)
+||+.. |.+| ++.|+|...|+|+|++.|.|.+||||||||+++ ..|||+|+|||+|++||++|.+|+..-+
T Consensus 65 si~~~lyG~q~rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~v 144 (479)
T KOG0415|consen 65 SIYGVLYGEQARFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIV 144 (479)
T ss_pred eeeeecccccchhhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhc
Confidence 987643 4555 568999999999999999999999999999875 7999999999999999999999997665
Q ss_pred c-cCcCCcccccccCC
Q 006988 159 V-KKKKASHVSSSEDS 173 (622)
Q Consensus 159 ~-~gkp~~~ikIsd~g 173 (622)
+ ++.|.++|.|.+-.
T Consensus 145 D~~~rPykdIRI~HTi 160 (479)
T KOG0415|consen 145 DPKNRPYKDIRIKHTI 160 (479)
T ss_pred CCCCCcccceeeeeeE
Confidence 4 56888998886543
No 29
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00035 Score=76.44 Aligned_cols=133 Identities=23% Similarity=0.290 Sum_probs=104.2
Q ss_pred CceeeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCCCCCCccc--CC--
Q 006988 17 GDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIY--GG-- 92 (622)
Q Consensus 17 g~~~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g~gg~si~--g~-- 92 (622)
|...--|.|+||.+-+|..++-|..+| ..+|+++..|.+|+..+++|.||...-....|..-| +.
T Consensus 108 Gd~~s~IAVs~~~sg~i~VvD~~~d~~-----------q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~ 176 (558)
T KOG0882|consen 108 GDKISLIAVSLFKSGKIFVVDGFGDFC-----------QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGP 176 (558)
T ss_pred CCeeeeEEeecccCCCcEEECCcCCcC-----------ccceecccccCceEEEEeeccccceeeccccceeEeecCCCc
Confidence 455668999999999999999999999 677999999999999999999986433333332111 11
Q ss_pred -cccC--CCCCCCCCCCeEEEeccCCCCCCCceeEEeeccCCCCCCCceEEEEEecChHHHHHHHhcCCccC
Q 006988 93 -KFTD--ENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTVKK 161 (622)
Q Consensus 93 -~~~d--E~~~lkh~~~G~Vsma~sg~ds~GSqFFItL~d~p~LDgk~tVFGkVv~G~eVld~I~~~~t~~g 161 (622)
.|++ +++.++|. .-++.+........+-+|+|.-.....|+.+..|||.|..+.+|++.|+...++..
T Consensus 177 ~qfPr~~l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~ 247 (558)
T KOG0882|consen 177 FQFPRTNLNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQ 247 (558)
T ss_pred ccCcccccccccccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhh
Confidence 1222 36777886 56777776666666789999999999999999999999999999999998887643
No 30
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.59 E-value=0.012 Score=65.79 Aligned_cols=114 Identities=22% Similarity=0.363 Sum_probs=69.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCCCCCCcccCCcccCCCCCC
Q 006988 22 KIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKL 101 (622)
Q Consensus 22 rIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g~gg~si~g~~~~dE~~~l 101 (622)
-|.|+||.+.||.+|..|..+. |-. ..--=-..+|=..++.+|.-|+ ..++..+.+||..-
T Consensus 376 vi~IeLydd~AP~s~~yFRk~t-GL~--------~~~VG~L~v~F~~~d~~mFk~~----------~~~~k~LiPEN~P~ 436 (503)
T TIGR03268 376 VIEIELYDDNAPRSVWYFRKFT-GLK--------TKPVGRLPVHFAFKEMIMFKGN----------KELAKGLIPENTPE 436 (503)
T ss_pred EEEEEEcccCCchHHHHHHHhc-CCc--------ccccceeEEEEEeCCeeEeccC----------chhccccCCCCCCC
Confidence 5899999999999999999886 211 0000013444455554443222 22344566676655
Q ss_pred CCCCCeEEEeccCCCCCCCceeEEeeccCC-------CCCCCceEEEEEecChHHHHHHHhc
Q 006988 102 DHNGPGILSMANSGANTNGSQFFITFRRQH-------HLDGKHVVFGKVVKGLNIVKKIEQV 156 (622)
Q Consensus 102 kh~~~G~Vsma~sg~ds~GSqFFItL~d~p-------~LDgk~tVFGkVv~G~eVld~I~~~ 156 (622)
....+|.|+|-|......| -.=|-|.++. .|++.+ |+|+||+++|.|.+|...
T Consensus 437 ~~V~ag~IgvTN~a~k~~G-~IGVRl~d~defGPTGE~F~gTN-IiG~Vv~~~e~Lk~~KeG 496 (503)
T TIGR03268 437 DKVEAGVIGVTNQACKHVG-MIGVRLEDSDEFGPTGEPFSGTN-IIGRVVEGMERLKGLKEG 496 (503)
T ss_pred CccccceEeeechhhhcCc-eEEEEccCCcccCCCCCCccCcc-eEEEecCChhHhcccccC
Confidence 5667889988775422222 2234444432 355654 679999999999887653
No 31
>PRK00969 hypothetical protein; Provisional
Probab=96.33 E-value=0.02 Score=64.05 Aligned_cols=113 Identities=24% Similarity=0.308 Sum_probs=69.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCCCCCCcccCCcccCCCCCC
Q 006988 22 KIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKL 101 (622)
Q Consensus 22 rIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g~gg~si~g~~~~dE~~~l 101 (622)
-|.||||.+.||.+|..|..+. |-. ..--=-..+|=+.++.+|.-|+ ..++..+.+||..-
T Consensus 379 vi~IeLydd~AP~s~~yFR~~t-GL~--------~~~VG~L~v~F~~~d~~lFk~~----------~~~~k~liPEN~P~ 439 (508)
T PRK00969 379 LIEIELYDDKAPRTVWYFRKVT-GLK--------TKPVGKLPVYFKYEDTYLFKGN----------IEYAKGLLPENTPE 439 (508)
T ss_pred EEEEEEcCcCCchHHHHHHHhc-CCc--------ccccceeEEEEEeCCeEEEccC----------hhhccccCCCCCCC
Confidence 5899999999999999999886 211 0000013444455665444333 22345566777666
Q ss_pred CCCCCeEEEeccCCCCCCCceeEEeeccCC-------CCCCCceEEEEEecChHHHHHHHhc
Q 006988 102 DHNGPGILSMANSGANTNGSQFFITFRRQH-------HLDGKHVVFGKVVKGLNIVKKIEQV 156 (622)
Q Consensus 102 kh~~~G~Vsma~sg~ds~GSqFFItL~d~p-------~LDgk~tVFGkVv~G~eVld~I~~~ 156 (622)
....+|.|+|-|......| -.=|-|.++. .|++. .|+|+|| ++|.|.+|...
T Consensus 440 ~~V~ag~IgvTN~a~k~~G-~iGVR~~d~d~fGPTGE~F~gT-NIIGrVv-~~e~Lk~lKeG 498 (508)
T PRK00969 440 DKVKAGEIGVTNMAAKYKG-MIGVRLSDNDEFGPTGEPFEGT-NIIGRVV-NLEKLKKLKEG 498 (508)
T ss_pred CccccceEeeechhhhcCc-eEEEEccCCcccCCCCCCccCc-eeEEEec-ChHHhcccccC
Confidence 6677889988775422222 2234444432 35554 4779999 99998887654
No 32
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.30 E-value=0.02 Score=64.05 Aligned_cols=104 Identities=21% Similarity=0.321 Sum_probs=66.9
Q ss_pred eeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCCCCCCcccCCcccCCCC
Q 006988 20 VEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENF 99 (622)
Q Consensus 20 ~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g~gg~si~g~~~~dE~~ 99 (622)
.-.+.|||..+ ||.+|++||++...+. .+..|+.++. +. .+.+.+..++.|++
T Consensus 200 fTy~evE~~~~-~p~s~EH~la~~~~G~------~~Vd~~tsTf--------i~------------d~~L~g~~~p~En~ 252 (503)
T TIGR03268 200 FTYVEVELDPN-APVSVEHFLALMEDGT------FRVDYRTSTF--------IS------------DDSLRGLDKPEENI 252 (503)
T ss_pred EEEEEEEEcCC-CChhHHHHHHHHhCCe------EEEeeeecce--------Ee------------cccccCccCCcccc
Confidence 34677887755 9999999999985431 0111122111 11 11233555666665
Q ss_pred CCCCCCCeEEEeccCCCCCCCceeEEeeccCCCCCCCceEEEEEecChHHHHHHHh
Q 006988 100 KLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQ 155 (622)
Q Consensus 100 ~lkh~~~G~Vsma~sg~ds~GSqFFItL~d~p~LDgk~tVFGkVv~G~eVld~I~~ 155 (622)
... ..|+|.+.+.|.+.. ..||.-.+-+. .--|+|+|+|+.|||+|+--+.
T Consensus 253 ~~R--~rGtVTVRn~G~G~G--~VYIYredr~s-s~sHtvVG~V~~GiELid~a~~ 303 (503)
T TIGR03268 253 EKR--RRGAVTVRNSGVGEG--RVYIYREDRPS-SLSHNVVGHVTRGIELIDIAQE 303 (503)
T ss_pred Ccc--cceeEEEEeeccCce--eEEEEcCCCCC-CcccceeEEEecceeeeecccC
Confidence 433 479999999875543 68998876542 2358999999999999985543
No 33
>PRK00969 hypothetical protein; Provisional
Probab=96.28 E-value=0.019 Score=64.25 Aligned_cols=104 Identities=21% Similarity=0.352 Sum_probs=67.2
Q ss_pred eeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCCCCCCcccCCcccCCCC
Q 006988 20 VEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENF 99 (622)
Q Consensus 20 ~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g~gg~si~g~~~~dE~~ 99 (622)
.-.|.|||.++ ||..|++|++|...+. .+..|+.++. +. .+.+.|..++.|++
T Consensus 203 fTy~eve~~~~-~p~s~EH~la~~~~G~------f~Vd~~tstf--------I~------------d~~L~g~~~p~En~ 255 (508)
T PRK00969 203 FTYVEVELDPG-APKSVEHFLALLEDGT------FEVDFETSTF--------IA------------DDRLQGLKIPEENF 255 (508)
T ss_pred EEEEEEEEcCC-CCchHHHHHHHHhCCe------EEEeeeecce--------Ee------------eccccCccCCcccc
Confidence 34577788765 9999999999985431 0111122211 11 11233555666765
Q ss_pred CCCCCCCeEEEeccCCCCCCCceeEEeeccCCCCCCCceEEEEEecChHHHHHHHh
Q 006988 100 KLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQ 155 (622)
Q Consensus 100 ~lkh~~~G~Vsma~sg~ds~GSqFFItL~d~p~LDgk~tVFGkVv~G~eVld~I~~ 155 (622)
... ..|+|.+.+.|.+.. ..||.-.+-+. .--|+|+|+|+.|||+|+--+.
T Consensus 256 ~~R--~~GtVTVRt~G~g~G--~vYIyredr~s-s~sHtvVG~V~~GiELi~~a~~ 306 (508)
T PRK00969 256 EPR--RRGTVTVRTAGVGVG--KVYIYREDRPS-SLSHTVVGRVTHGIELIDFAKE 306 (508)
T ss_pred Ccc--ccceEEEEeeccCce--eEEEECCCCCC-CccceeEEEEecceeeeecccC
Confidence 443 379999999876543 68998876542 2358999999999999985443
No 34
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=96.18 E-value=0.012 Score=56.38 Aligned_cols=113 Identities=21% Similarity=0.296 Sum_probs=58.7
Q ss_pred EEEeCCceeeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCc--eEEecCCCCCCCCCCCcc
Q 006988 12 DVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGF--MIQGGDFSKGNGTGGESI 89 (622)
Q Consensus 12 Dtsigg~~~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~--vIQgGd~~~g~g~gg~si 89 (622)
.++++|. .++.+|+.|.||+||+.|.++. =|.+..||-..-+. ||.-+++..
T Consensus 2 ~~~~~g~---~~~A~l~~d~AP~Tcaa~~~~L--------------P~~~~~~HarwSG~ei~~~l~~~~~--------- 55 (147)
T PF12903_consen 2 TLTKRGV---SFTARLLDDKAPKTCAAFWEAL--------------PLKGKVIHARWSGEEIWIPLPDFDP--------- 55 (147)
T ss_dssp EETTTTE---EEEEEE-TTTSHHHHHHHHHH----------------EEEE-EE-SSSSSEEEEEEE--SS---------
T ss_pred eEecCCe---EEEEEEcccCChHHHHHHHHhC--------------CCCCcEEEEEEECcEEEEECCCcCc---------
Confidence 3444443 7899999999999999999887 17888888877664 555565431
Q ss_pred cCCcccCCCCCCCCCCCeEEEec--c-----CCCC-CCCceeEEeec------cCCCCCCCceEEEEEecChHHHHHHHh
Q 006988 90 YGGKFTDENFKLDHNGPGILSMA--N-----SGAN-TNGSQFFITFR------RQHHLDGKHVVFGKVVKGLNIVKKIEQ 155 (622)
Q Consensus 90 ~g~~~~dE~~~lkh~~~G~Vsma--~-----sg~d-s~GSqFFItL~------d~p~LDgk~tVFGkVv~G~eVld~I~~ 155 (622)
..+.-||... +-.+|-|.+. . ..+. .....+|+-.+ +..+|-| .+|++|++|+|-|.++..
T Consensus 56 --~~~~~EN~T~-~P~pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~G--N~FatI~egle~la~~~~ 130 (147)
T PF12903_consen 56 --FEPGRENHTV-TPIPGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPG--NHFATITEGLEELAEACR 130 (147)
T ss_dssp --S---S-SEES-S--TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE--E--EEEEEEEESHHHHHHHHH
T ss_pred --CCCCCCcCcc-cCCCCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccce--eEEEEEcCCHHHHHHHHH
Confidence 1122233222 2234555544 0 0011 12233444332 2344555 589999999998776654
No 35
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.018 Score=62.44 Aligned_cols=106 Identities=25% Similarity=0.433 Sum_probs=70.4
Q ss_pred ceeeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCCCCCCcccCCcccCC
Q 006988 18 DPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDE 97 (622)
Q Consensus 18 ~~~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g~gg~si~g~~~~dE 97 (622)
...-.|.|||-++ +|++|++|++|... |+.=-.+..|-+|. -+.+.+.+++.|
T Consensus 200 rifTy~eve~s~n-sP~saEH~lalmed---------------G~lri~~~tntfis-----------~~~lq~~~~~~e 252 (512)
T COG4070 200 RIFTYFEVELSRN-SPKSAEHFLALMED---------------GTLRIDVTTNTFIS-----------DDTLQEEKVPEE 252 (512)
T ss_pred EEEEEEEEEeCCC-CchhHHHHHHHhhc---------------ceEEEEEeccceee-----------ccccccccCChh
Confidence 3445677888766 99999999999842 33322233333321 123335567777
Q ss_pred CCCCCCCCCeEEEeccCCCCCCCceeEEeeccCCCCCCCceEEEEEecChHHHHHHHh
Q 006988 98 NFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQ 155 (622)
Q Consensus 98 ~~~lkh~~~G~Vsma~sg~ds~GSqFFItL~d~p~LDgk~tVFGkVv~G~eVld~I~~ 155 (622)
|+.+.. +|.|.+.|.|-+. -..||.-.+-+.- --|.|+|+|+.|||+|+-.+.
T Consensus 253 n~d~Re--rG~iTvRn~Gvge--GrvYIyRedR~ss-~sHnvVGrV~eGiELid~a~e 305 (512)
T COG4070 253 NFDLRE--RGAITVRNVGVGE--GRVYIYREDRPSS-LSHNVVGRVIEGIELIDLAEE 305 (512)
T ss_pred hhhhhh--cceEEEEeeeccc--ceEEEEecCCCCc-cccceeeeeecceEEEEeccc
Confidence 777654 7999999877543 3678887664322 248899999999999985544
No 36
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.028 Score=61.00 Aligned_cols=115 Identities=23% Similarity=0.354 Sum_probs=61.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCc-eEE-ecCCCCCCCCCCCcccCCcccCCCC
Q 006988 22 KIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGF-MIQ-GGDFSKGNGTGGESIYGGKFTDENF 99 (622)
Q Consensus 22 rIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~-vIQ-gGd~~~g~g~gg~si~g~~~~dE~~ 99 (622)
-|.||||.+.||.+|..|..+. |-.. ++ ---..+|-+.++. +|. -|+ ..++..+..||.
T Consensus 377 iieIELyed~APrSv~yFRr~t-~l~~------kp--VGkL~Vhfay~d~~~vmfegn----------~~~~K~llPEN~ 437 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRST-GLKT------KP--VGKLKVHFAYDDTYLVMFEGN----------AVLAKGLLPENT 437 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhc-cccc------cc--ccceEEEEEeCCceEEEEcCC----------hHHhccCCCCCC
Confidence 5899999999999999998875 2110 00 1123344444442 222 122 222334445554
Q ss_pred CCCCCCCeEEEeccCCCCCCCceeEEeeccCC-------CCCCCceEEEEEecChHHHHHHHhcC
Q 006988 100 KLDHNGPGILSMANSGANTNGSQFFITFRRQH-------HLDGKHVVFGKVVKGLNIVKKIEQVG 157 (622)
Q Consensus 100 ~lkh~~~G~Vsma~sg~ds~GSqFFItL~d~p-------~LDgk~tVFGkVv~G~eVld~I~~~~ 157 (622)
......+|.|++-|...-..| -.=+-|.+.. .|.+ -.++|+|++|.+-|..|.+..
T Consensus 438 P~d~Ve~g~iGvTN~a~r~~G-mIGVRL~dsdefGPTGE~Fe~-TNiIGrIveg~e~l~~ikeGd 500 (512)
T COG4070 438 PADTVEAGEIGVTNQAARHMG-MIGVRLEDSDEFGPTGEKFEG-TNIIGRIVEGPERLIGIKEGD 500 (512)
T ss_pred chhheecccccccccchhccc-eeEEEeccccccCCCCCcccc-ceeehhhccChHHhcccccCC
Confidence 444444555554442211111 1223333332 2344 357899999999998887643
No 37
>KOG3116 consensus Predicted C3H1-type Zn-finger protein [General function prediction only]
Probab=94.11 E-value=0.12 Score=49.56 Aligned_cols=11 Identities=73% Similarity=0.601 Sum_probs=4.4
Q ss_pred CCCCCCccccc
Q 006988 274 SRSSSDSESLS 284 (622)
Q Consensus 274 s~S~Sds~s~s 284 (622)
+.+++|+++++
T Consensus 142 SsSssdSdS~s 152 (177)
T KOG3116|consen 142 SSSSSDSDSES 152 (177)
T ss_pred cCCCCcccccc
Confidence 33344444433
No 38
>KOG2985 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.56 E-value=0.1 Score=53.87 Aligned_cols=10 Identities=40% Similarity=0.481 Sum_probs=4.3
Q ss_pred CCCchhhhcc
Q 006988 225 SSSSGDRRRR 234 (622)
Q Consensus 225 S~~~~~rrkr 234 (622)
+|.+++...+
T Consensus 234 sD~sd~e~~r 243 (306)
T KOG2985|consen 234 SDESDDEDDR 243 (306)
T ss_pred cccccchhhh
Confidence 3444444444
No 39
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=92.00 E-value=0.58 Score=43.38 Aligned_cols=103 Identities=20% Similarity=0.225 Sum_probs=53.7
Q ss_pred EEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCCCCCCccc
Q 006988 11 LDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIY 90 (622)
Q Consensus 11 fDtsigg~~~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g~gg~si~ 90 (622)
+.|++|+. .|.++|+.. .|+..|++++ +.+.....|-+ -||--++.
T Consensus 3 I~i~i~~~---~~~a~L~d~---~ta~~~~~~L-------Plt~~~~~~g~-E~y~~~p~-------------------- 48 (120)
T PF04126_consen 3 IKITIGGQ---EIEAELNDS---PTARAFAAQL-------PLTVTMNDWGN-EKYFSLPL-------------------- 48 (120)
T ss_dssp EEEEETTE---EEEEEEETT---HHHHHHHHC--------SEEEEEEECTT-EEEEE-S---------------------
T ss_pred EEEEECCE---EEEEEECCC---HHHHHHHHhC-------CeEEEHHHCCc-eEEEeCCC--------------------
Confidence 56677754 799999977 7899999887 11111112211 11111110
Q ss_pred CCccc-CCCCCCCCCCCeEEEeccCCCCCCCceeEEeeccCC-------CCCCCceEEEEEecChHHHHHHHh
Q 006988 91 GGKFT-DENFKLDHNGPGILSMANSGANTNGSQFFITFRRQH-------HLDGKHVVFGKVVKGLNIVKKIEQ 155 (622)
Q Consensus 91 g~~~~-dE~~~lkh~~~G~Vsma~sg~ds~GSqFFItL~d~p-------~LDgk~tVFGkVv~G~eVld~I~~ 155 (622)
.+. ++... .....|.|+.... +..|.|-+++.+ .+....++||+|+.++++|..|..
T Consensus 49 --~l~~~~~~~-~~~~~GDi~Yw~p-----g~~l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~ 113 (120)
T PF04126_consen 49 --KLPTEENPR-SSVEAGDIAYWPP-----GGALAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKG 113 (120)
T ss_dssp ------SSSEE-SSB-TTEEEEECC-----CTEEEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--T
T ss_pred --CCCcccCcc-ccccCceEEEeCC-----CCEEEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCC
Confidence 111 11111 2235788877632 234666666653 456678999999999999987753
No 40
>KOG2812 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.78 E-value=0.73 Score=49.78 Aligned_cols=8 Identities=25% Similarity=0.476 Sum_probs=3.0
Q ss_pred cccccccc
Q 006988 178 TVRRHKKS 185 (622)
Q Consensus 178 ~k~k~kks 185 (622)
.|++.|++
T Consensus 197 ~KkkskRs 204 (426)
T KOG2812|consen 197 RKKKSKRS 204 (426)
T ss_pred hhhhhhhh
Confidence 33333333
No 41
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=73.99 E-value=0.86 Score=51.74 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=17.1
Q ss_pred CCCCceeEEeeccCCCCCCCceEEEEEecChHHHHHHHh
Q 006988 117 NTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQ 155 (622)
Q Consensus 117 ds~GSqFFItL~d~p~LDgk~tVFGkVv~G~eVld~I~~ 155 (622)
|.....|-|+| ||.||--.--.|+-+.+..
T Consensus 619 np~n~RfsINf---------FTsIGLGgLTeelRe~L~~ 648 (739)
T KOG2140|consen 619 NPRNTRFSINF---------FTSIGLGGLTEELREYLKN 648 (739)
T ss_pred Ccccceeeeeh---------hhhhccccchHHHHHHHHh
Confidence 56677899988 6666543222344444443
No 42
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=68.12 E-value=73 Score=36.83 Aligned_cols=16 Identities=25% Similarity=0.551 Sum_probs=13.0
Q ss_pred CCCCCCCeEEEEEEeC
Q 006988 1 MSEKKNPLVFLDVSID 16 (622)
Q Consensus 1 m~~~~np~V~fDtsig 16 (622)
||++..+.|||.|+++
T Consensus 247 LPk~d~rh~~fVisld 262 (615)
T KOG0526|consen 247 LPKKDQRHVYFVISLD 262 (615)
T ss_pred ccCCCCceEEEEEecC
Confidence 5677788899999886
No 43
>PHA03001 putative virion core protein; Provisional
Probab=65.67 E-value=18 Score=34.26 Aligned_cols=51 Identities=24% Similarity=0.314 Sum_probs=36.8
Q ss_pred CeEEEEEEeCCceeeeEEEEEcCCCChH------HHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecC
Q 006988 7 PLVFLDVSIDGDPVEKIVIELFADVVPK------TAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKG 70 (622)
Q Consensus 7 p~V~fDtsigg~~~GrIvIELf~d~APk------tv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg 70 (622)
--|||++..|-. .|.|++-...||. ++++||++.. +-..-+-++|+=+|.+
T Consensus 4 vNIfLEsd~grv---kl~~~~~~~~~~~~~~~~ka~~~fl~~L~----------kYi~v~eStFylvvrd 60 (132)
T PHA03001 4 VNIFLETDAGRV---KLAIENPDKVCATKAEMRKAINKFLELLK----------KYIHVDKSTFYLVVKD 60 (132)
T ss_pred eEEEEeccCCce---EEEEcCCCccccccchHHHHHHHHHHHHH----------hhEEecccEEEEEEec
Confidence 458999987732 4666666666664 7789999883 4456678899988876
No 44
>KOG2985 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.64 E-value=9.7 Score=39.78 Aligned_cols=15 Identities=33% Similarity=0.618 Sum_probs=9.1
Q ss_pred CCCCCCCchhhhccc
Q 006988 221 SPSESSSSGDRRRRK 235 (622)
Q Consensus 221 sss~S~~~~~rrkr~ 235 (622)
.++.+++.++++=++
T Consensus 233 dsD~sd~e~~rrs~~ 247 (306)
T KOG2985|consen 233 DSDESDDEDDRRSKR 247 (306)
T ss_pred ccccccchhhhhhhh
Confidence 456666666666554
No 45
>PF06138 Chordopox_E11: Chordopoxvirus E11 protein; InterPro: IPR009201 This group represents a virion core protein, vaccinia E11L type.
Probab=50.86 E-value=54 Score=31.06 Aligned_cols=51 Identities=14% Similarity=0.188 Sum_probs=33.3
Q ss_pred CeEEEEEEeCCceeeeEEEEEcCCCChH-------HHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecC
Q 006988 7 PLVFLDVSIDGDPVEKIVIELFADVVPK-------TAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKG 70 (622)
Q Consensus 7 p~V~fDtsigg~~~GrIvIELf~d~APk-------tv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg 70 (622)
--|||++..|-. +|.|++-...||. +++.||+... +-..-+-+.|+=+|.+
T Consensus 4 vNIfLEsd~grv---kl~~~~~~~~c~~~~~~~~~Av~~Fl~~L~----------kyI~veeStFylvvrd 61 (130)
T PF06138_consen 4 VNIFLESDSGRV---KLRYEEPDCKCARTGCEARRAVKHFLSVLK----------KYIDVEESTFYLVVRD 61 (130)
T ss_pred eEEEEeccCcee---EEEEeCCCcccccccchHHHHHHHHHHHHH----------hhEEecccEEEEEEec
Confidence 458999987721 3444444434333 6889999883 3445677889888876
No 46
>COG2164 Uncharacterized conserved protein [Function unknown]
Probab=44.74 E-value=19 Score=33.00 Aligned_cols=22 Identities=14% Similarity=0.066 Sum_probs=16.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHh
Q 006988 21 EKIVIELFADVVPKTAENFRALC 43 (622)
Q Consensus 21 GrIvIELf~d~APktv~NFl~Lc 43 (622)
|.-++||+.++ |.+|..+..-.
T Consensus 13 g~c~~eL~ee~-pE~vr~i~d~l 34 (126)
T COG2164 13 GHCTGELDEEN-PESVRRIYDSL 34 (126)
T ss_pred ceEEEEccccC-hHHHHHHHHhC
Confidence 47899999887 99987765443
No 47
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=40.75 E-value=67 Score=37.46 Aligned_cols=7 Identities=0% Similarity=0.406 Sum_probs=2.6
Q ss_pred cccCcee
Q 006988 58 HYKGTMF 64 (622)
Q Consensus 58 ~YdGt~F 64 (622)
||+.++|
T Consensus 221 yf~ds~~ 227 (757)
T KOG4368|consen 221 YFDDSII 227 (757)
T ss_pred chhHHHH
Confidence 3333333
No 48
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=39.08 E-value=23 Score=40.59 Aligned_cols=7 Identities=14% Similarity=0.007 Sum_probs=4.1
Q ss_pred HHHHHHh
Q 006988 37 ENFRALC 43 (622)
Q Consensus 37 ~NFl~Lc 43 (622)
..||++.
T Consensus 38 ~QflQ~h 44 (653)
T KOG2548|consen 38 IQFLQAH 44 (653)
T ss_pred HHHHHHh
Confidence 4566665
No 49
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=37.59 E-value=94 Score=30.11 Aligned_cols=36 Identities=11% Similarity=0.123 Sum_probs=20.1
Q ss_pred EEeccCCCCCCCceeEEeeccCCCCCCCceEE-EEEecC
Q 006988 109 LSMANSGANTNGSQFFITFRRQHHLDGKHVVF-GKVVKG 146 (622)
Q Consensus 109 Vsma~sg~ds~GSqFFItL~d~p~LDgk~tVF-GkVv~G 146 (622)
|++....++.+.-.|.|+|.+.... . ...| -+|+++
T Consensus 75 i~~~~~~pn~~~~~~lInl~d~~~~-~-~~~~~~~v~d~ 111 (144)
T COG2927 75 IAWPGGNPNSARVDLLINLADEFPD-F-AYEFVTRVFDF 111 (144)
T ss_pred EEcCCCCCCCCceeEEEeccccCCC-c-cceEEEEEeec
Confidence 3333333455555799999876432 2 2334 667775
No 50
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=34.51 E-value=18 Score=37.94 Aligned_cols=6 Identities=33% Similarity=0.844 Sum_probs=2.6
Q ss_pred eeEEee
Q 006988 122 QFFITF 127 (622)
Q Consensus 122 qFFItL 127 (622)
|++|.+
T Consensus 117 Qylir~ 122 (303)
T KOG3064|consen 117 QYLIRM 122 (303)
T ss_pred HHHHHH
Confidence 444444
No 51
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=33.73 E-value=30 Score=43.66 Aligned_cols=6 Identities=17% Similarity=0.672 Sum_probs=2.9
Q ss_pred HHHHHH
Q 006988 149 IVKKIE 154 (622)
Q Consensus 149 Vld~I~ 154 (622)
||..|.
T Consensus 332 IlrEmt 337 (1191)
T PF05110_consen 332 ILREMT 337 (1191)
T ss_pred HHHHHh
Confidence 454444
No 52
>KOG2138 consensus Predicted RNA binding protein, contains G-patch domain [RNA processing and modification]
Probab=31.34 E-value=17 Score=42.84 Aligned_cols=13 Identities=23% Similarity=0.468 Sum_probs=8.0
Q ss_pred CCCCCceEEEEEe
Q 006988 132 HLDGKHVVFGKVV 144 (622)
Q Consensus 132 ~LDgk~tVFGkVv 144 (622)
.++-.-+|||-|.
T Consensus 679 k~sln~~IfgD~d 691 (883)
T KOG2138|consen 679 KVSLNQTIFGDVD 691 (883)
T ss_pred cchHHHHHhccch
Confidence 3444457888775
No 53
>KOG3794 consensus CBF1-interacting corepressor CIR and related proteins [Transcription]
Probab=27.21 E-value=17 Score=40.16 Aligned_cols=17 Identities=12% Similarity=-0.007 Sum_probs=11.7
Q ss_pred CCChHHHHHHHHHhhcC
Q 006988 30 DVVPKTAENFRALCTGE 46 (622)
Q Consensus 30 d~APktv~NFl~Lctg~ 46 (622)
+|++.+-+-|-.||.+.
T Consensus 94 ewq~~~eapRE~~ak~~ 110 (453)
T KOG3794|consen 94 EWQRKYEAPREKLAKAP 110 (453)
T ss_pred cccccccccHHHHhcCC
Confidence 56776666777788654
No 54
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=25.16 E-value=61 Score=36.13 Aligned_cols=118 Identities=31% Similarity=0.367 Sum_probs=0.0
Q ss_pred cccCCCCCCCCCcccCCCCCCCCCCCCCCC-CCCCC--CCCCCCCCC----CCCCC---CCCCCCCcccccCCCCCCCCC
Q 006988 453 RRYRTPERSPPRYYRYGGRNIHERTQNRYS-SQRGY--SDRSPRRHY----RSPPR---GRSPPRYQRRSRRSRSISRSP 522 (622)
Q Consensus 453 r~yrtp~rs~~r~~~~~~r~~~~r~~~r~~-~~r~~--s~~~~~~~~----r~~~r---~~sp~r~~~~~~r~~s~s~sp 522 (622)
.|-|+++++..+++--..+.++..++.|.. +.|.. +...-.... +..-| +++|++..++..++++.++-.
T Consensus 275 sR~Rs~srsRsrrrdksrrrdRs~dRERrr~RsR~k~~sksRdK~ke~~~dkekkR~~~SRt~~rs~srSrRSRs~srer 354 (479)
T KOG4676|consen 275 SRRRSKSRSRSRRRDKSRRRDRSKDRERRRERSREKEHSKSRDKEKEKEQDKEKKREKKSRTPPRSYSRSRRSRSSSRER 354 (479)
T ss_pred hhhccccccccccccccchhhccchhhhhhhhhccccccccchhhhhhhhhhhhhhhhcccCCCccccchhccccchhhh
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccCcccCCCCCCCCCCCCcccccCCCCCCCCC
Q 006988 523 DGYRGRYGDDSQSRSSSPRDKRPTISEGLKCRLGPKIDEEHSPAKRRYRSRSRSRSL 579 (622)
Q Consensus 523 ~~~r~~~~~rs~srs~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~s~srsrs~ 579 (622)
++.|.++++|++..+.++-+ ....+|......-..+.+---+.++|+|
T Consensus 355 rrRRSrSrsRspR~skt~~r---------kssr~~~~RSR~kkdKkrdker~~sRs~ 402 (479)
T KOG4676|consen 355 RRRRSRSRSRSPRTSKTIKR---------KSSRSPSPRSRNKKDKKRDKERDRSRSE 402 (479)
T ss_pred hhhhccccccCCCCCCCCCC---------CcCCCCCcccchhhhhhhhhhhhcccCh
No 55
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=24.25 E-value=48 Score=36.50 Aligned_cols=51 Identities=18% Similarity=0.248 Sum_probs=33.4
Q ss_pred CCCeEEEeccCCCCCCCceeEEeeccCCCCCCCceEEEEEe-cChHHHHHHHh
Q 006988 104 NGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVV-KGLNIVKKIEQ 155 (622)
Q Consensus 104 ~~~G~Vsma~sg~ds~GSqFFItL~d~p~LDgk~tVFGkVv-~G~eVld~I~~ 155 (622)
-..|.|.+.|....-.--+.-|++.+.|. |+...|+|+|+ +-+.+|+-|..
T Consensus 298 r~~G~ItIdN~~ygRY~GElQI~~~dlp~-d~rvNViG~V~~~d~~LLd~I~~ 349 (357)
T PF05913_consen 298 RKRGDITIDNENYGRYKGELQIVKKDLPA-DERVNVIGRVDEEDLPLLDYIKP 349 (357)
T ss_dssp B-TTEEEEE-GGGGGGTT-EEEESS-B----TTEEEEEEE-GGGGGGGGG--T
T ss_pred ccCceEEEeCCCccccccEEEEEcccCCC-CCCeeEEEEECHHHHHHHHhcCC
Confidence 45899999987655555699999999876 78889999999 46888888753
No 56
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=24.16 E-value=9.5e+02 Score=26.11 Aligned_cols=173 Identities=26% Similarity=0.298 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCcCCCCCCCCcccccCCCCCccccccccccCCCCCCCCCcccCCCCCCC
Q 006988 395 GNDGRSPPKKLGDQSPARRVSEPSASNHSRGLSRSPSPDGTPKRVRKGRGFTERYSFARRYRTPERSPPRYYRYGGRNIH 474 (622)
Q Consensus 395 ~~~srsp~r~~~~r~~~~~~s~~~~~~~gr~~srs~sp~~sp~r~~~gR~~~~rys~~r~yrtp~rs~~r~~~~~~r~~~ 474 (622)
++.++++.|. ...+..+...-.-.|++.-.+-|.|+|-+ ...|-+-..||. -+.| -|...
T Consensus 164 rsRsrs~kRs-rs~s~dR~r~~~~Sp~rr~~~rRnpsp~~----r~s~~~~ggrr~-~rs~--------------sRsrs 223 (354)
T KOG2146|consen 164 RSRSRSGKRS-RSSSLDRKRFHDLSPRRRPRPRRNPSPHS----RFSGGSRGGRRG-GRSY--------------SRSRS 223 (354)
T ss_pred ccccCCcccc-cccccccccccccCcccCCCCCCCCCccc----ccCCCCcccccC-cccc--------------ccccC
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCcc--cC
Q 006988 475 ERTQNRYSSQRGYSDRSPRRHYRSPPRGRSPPRYQRRSRRSRSISRSPDGYRGRYGDDSQS--RSSSPRDKRPTIS--EG 550 (622)
Q Consensus 475 ~r~~~r~~~~r~~s~~~~~~~~r~~~r~~sp~r~~~~~~r~~s~s~sp~~~r~~~~~rs~s--rs~sp~~~~~~~~--~~ 550 (622)
+.+.++| ++.-++.|++.-|..-+--.|||.+ +.....++.+ ....+.+++... .+.+|.....+.. .+
T Consensus 224 p~r~d~~---~p~Rrss~~r~TR~~~~~s~~pRrr---~g~sr~sr~~-~R~~~R~dR~~~seq~qSp~q~~~P~~~~RR 296 (354)
T KOG2146|consen 224 PPREDRY---RPTRRSSPRRRTRRDEGFSEPPRRR---DGGSRESRGG-GREKGRYDRRALSEQSQSPTQKHDPEMKKRR 296 (354)
T ss_pred Ccccccc---CCcccCCcccccccccccCCCcccc---cCCCCCCCCC-cccccccccccchhhccCCcccCChhhhhcC
Q ss_pred cccCCCCCCCCCCCCcccccCCCCCCCCCCCCC-----------CCCCCCCCCCC
Q 006988 551 LKCRLGPKIDEEHSPAKRRYRSRSRSRSLDSSH-----------SKSPEASPPKN 594 (622)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~r~~s~srsrs~~~~~-----------srs~~~s~~~~ 594 (622)
+-+...-.+-.+-+-.-.+...-+++++..+.+ -+||+++|.+.
T Consensus 297 pN~~~sd~sssssse~eRRR~~hs~srsas~~~~k~~kS~~~RkRrSPsa~ps~~ 351 (354)
T KOG2146|consen 297 PNDTDSDVSSSSSSEEERRRKKHSKSRSASKKHKKEKKSKKHRKRRSPSASPSGS 351 (354)
T ss_pred CCcccccccccccchhhhhhhccccccccccccchhhcccccccccCCCCCCccc
No 57
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=21.91 E-value=1.6e+02 Score=31.40 Aligned_cols=80 Identities=23% Similarity=0.294 Sum_probs=46.6
Q ss_pred eeeeEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEEecCCCCCCCCCCCcccCCcccCCC
Q 006988 19 PVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDEN 98 (622)
Q Consensus 19 ~~GrIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQgGd~~~g~g~gg~si~g~~~~dE~ 98 (622)
.+|+|.+.||...-+.....-+.|+.+ +|. -..=|-|+.|..- ...+..+...+..++|.-+|.|.+
T Consensus 165 ~lgrld~kl~a~ae~dn~kaa~rl~sd-mge-----ffmp~pg~rinq~-------~~~l~~~g~~g~asyyevkf~d~~ 231 (297)
T PF07174_consen 165 VLGRLDLKLFASAEPDNTKAAVRLASD-MGE-----FFMPYPGTRINQE-------TTPLDANGMPGSASYYEVKFTDAN 231 (297)
T ss_pred EeccccccccccccCChHHHHHHHhcc-ccc-----eeccCCCcccccc-------ccccccCCcccceeEEEEEeccCC
Confidence 478999999999888888888888843 221 1112344444221 111222222344466777788776
Q ss_pred CCCCCCCCeEEEe
Q 006988 99 FKLDHNGPGILSM 111 (622)
Q Consensus 99 ~~lkh~~~G~Vsm 111 (622)
...-....|+|+.
T Consensus 232 kp~gqiw~~vvg~ 244 (297)
T PF07174_consen 232 KPNGQIWAGVVGS 244 (297)
T ss_pred CCCCceEEEeecC
Confidence 5444455677765
No 58
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.68 E-value=46 Score=36.71 Aligned_cols=144 Identities=10% Similarity=0.060 Sum_probs=84.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCCCCCCCCccccCceeEEeecCceEE---------ecCCCCCCCCCCCcccCC
Q 006988 22 KIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQ---------GGDFSKGNGTGGESIYGG 92 (622)
Q Consensus 22 rIvIELf~d~APktv~NFl~Lctg~~g~g~~~~k~g~YdGt~F~RVipg~vIQ---------gGd~~~g~g~gg~si~g~ 92 (622)
.+++-.-.+.-|..|-.|+.-+... -.-||.++..-.|..|+++. .|-+.... ..+..+
T Consensus 66 ~~~~~st~e~pPL~~iefL~rv~dv--------~~eyFg~~s~~~Ik~N~~vv~ell~emiDnGfpl~tE----~NiLke 133 (418)
T KOG2740|consen 66 FFCAVSTVETPPLMVIEFLHRVVDV--------LLEYFGGLSESKIKDNVVVVYELLDEMIDNGFPLVTE----PNILKE 133 (418)
T ss_pred EEEEEEeccCCChhHHHHHHHHHHH--------HHHHhcccCHhHhhcceeeHHHHHHHHHHcCCCcccC----hhHHHh
Confidence 4455555677799999999877442 23488899888888887554 33222111 011111
Q ss_pred cccCC----------------CCCCCCCCCeEEEeccCCCCCCCceeEEeeccC----CCCCCCceEEEEEecChHHHHH
Q 006988 93 KFTDE----------------NFKLDHNGPGILSMANSGANTNGSQFFITFRRQ----HHLDGKHVVFGKVVKGLNIVKK 152 (622)
Q Consensus 93 ~~~dE----------------~~~lkh~~~G~Vsma~sg~ds~GSqFFItL~d~----p~LDgk~tVFGkVv~G~eVld~ 152 (622)
.++.. ...+..-..-+|-|...+.....-+|||-+-+. -+-+| -+|||.|-.-+|+.-+
T Consensus 134 ~i~pps~l~~~~~svTg~~n~~~~lPtg~~s~VPWR~~~~Ky~nNE~yvdvlEeidai~~k~g-slv~~eI~g~vd~~~q 212 (418)
T KOG2740|consen 134 LIPPPSFLSKKFNSVTGNSNVSDTLPTGALSNVPWRTAGVKYTNNEAYVDVLEEIDAIVDKKG-SLVFGEIQGIVDVCSQ 212 (418)
T ss_pred hcCChHHHHHHHhhhhccccccccCCCcccccccccccCcccccchhhhhhhheeheEecCCC-CEEEEEEEEEEEEEEe
Confidence 11111 011222223455566677666677888877431 12234 4899999888888888
Q ss_pred HHhcCC-----ccCcCCcccccccCCCCccc
Q 006988 153 IEQVGT-----VKKKKASHVSSSEDSSDGET 178 (622)
Q Consensus 153 I~~~~t-----~~gkp~~~ikIsd~g~~~~~ 178 (622)
|..++. ..+..+..+.+-.|..-..|
T Consensus 213 LsgmPdltlsl~np~~L~dvsfHpcVr~krw 243 (418)
T KOG2740|consen 213 LSGMPDLTLSLNNPRLLGDVSFHPCVRYKRW 243 (418)
T ss_pred ecCCCceEEEccCccccCCcccccceeeccc
Confidence 887765 34566667777777754333
No 59
>KOG3953 consensus SOCS box protein SSB-1, contains SPRY domain [General function prediction only]
Probab=20.84 E-value=2.5e+02 Score=29.40 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=30.4
Q ss_pred EEEEEEeCCceee-eEEEEEcCCCChHHHHHHHHHhhc
Q 006988 9 VFLDVSIDGDPVE-KIVIELFADVVPKTAENFRALCTG 45 (622)
Q Consensus 9 V~fDtsigg~~~G-rIvIELf~d~APktv~NFl~Lctg 45 (622)
=+++|+.-+.++| .+||.+++..||..|.-|++|+-.
T Consensus 71 h~w~i~w~~r~~GT~avVGIaTk~Aplha~gy~aLlGs 108 (242)
T KOG3953|consen 71 HAWEIAWPNRQRGTHAVVGIATKVAPLHAVGYTALLGS 108 (242)
T ss_pred eEEEEEecCCccCCcceEEEEcccCchhhhHHHHHhCC
Confidence 4567776666677 589999999999999999999943
Done!