Query 006989
Match_columns 622
No_of_seqs 340 out of 1533
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 17:21:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006989.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006989hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1471 Phosphatidylinositol t 100.0 1.2E-44 2.6E-49 381.0 23.9 274 73-349 11-289 (317)
2 KOG1470 Phosphatidylinositol t 100.0 1.5E-36 3.2E-41 314.8 20.0 200 103-323 47-246 (324)
3 PF00650 CRAL_TRIO: CRAL/TRIO 100.0 6.2E-30 1.4E-34 241.0 8.6 157 153-319 2-159 (159)
4 smart00516 SEC14 Domain in hom 99.9 2.4E-27 5.1E-32 223.2 15.7 154 154-321 5-158 (158)
5 cd00170 SEC14 Sec14p-like lipi 99.9 1.7E-24 3.8E-29 200.7 15.1 146 161-319 12-157 (157)
6 PF13716 CRAL_TRIO_2: Divergen 99.3 3.2E-13 6.9E-18 127.1 2.6 139 162-322 6-146 (149)
7 PF03765 CRAL_TRIO_N: CRAL/TRI 98.6 4.7E-08 1E-12 77.3 5.3 47 83-130 1-55 (55)
8 KOG4406 CDC42 Rho GTPase-activ 98.2 6.7E-06 1.4E-10 88.2 10.0 127 165-312 89-215 (467)
9 COG4064 MtrG Tetrahydromethano 78.9 1.8 3.8E-05 36.0 2.6 25 534-558 11-35 (75)
10 TIGR01149 mtrG N5-methyltetrah 75.6 2.4 5.3E-05 35.2 2.5 25 534-558 8-32 (70)
11 PRK01026 tetrahydromethanopter 75.1 2.9 6.2E-05 35.5 2.9 25 534-558 11-35 (77)
12 PF04210 MtrG: Tetrahydrometha 72.0 3.3 7.2E-05 34.5 2.5 25 534-558 8-32 (70)
13 PF14555 UBA_4: UBA-like domai 61.0 27 0.00058 26.1 5.4 36 84-128 2-37 (43)
14 PF10805 DUF2730: Protein of u 54.6 95 0.0021 27.9 8.8 17 479-495 9-25 (106)
15 PF02845 CUE: CUE domain; Int 54.5 37 0.00081 25.1 5.2 38 84-129 3-40 (42)
16 PHA01750 hypothetical protein 46.1 99 0.0021 25.7 6.6 42 570-613 30-71 (75)
17 smart00546 CUE Domain that may 45.8 54 0.0012 24.2 4.9 38 84-129 4-41 (43)
18 TIGR02132 phaR_Bmeg polyhydrox 43.0 72 0.0016 31.5 6.4 74 536-610 70-154 (189)
19 KOG1962 B-cell receptor-associ 42.8 1.1E+02 0.0023 31.4 7.9 73 538-610 114-191 (216)
20 COG1340 Uncharacterized archae 41.8 1.9E+02 0.0041 30.9 9.8 65 540-613 109-173 (294)
21 KOG1838 Alpha/beta hydrolase [ 39.4 1.9E+02 0.0041 32.4 9.8 91 166-281 121-217 (409)
22 TIGR03185 DNA_S_dndD DNA sulfu 38.8 1.2E+02 0.0027 35.7 8.9 64 538-603 391-454 (650)
23 PF05377 FlaC_arch: Flagella a 37.1 98 0.0021 24.9 5.2 14 546-559 1-14 (55)
24 KOG0612 Rho-associated, coiled 35.2 1.3E+02 0.0028 37.8 8.3 46 540-593 443-491 (1317)
25 PRK00117 recX recombination re 33.5 58 0.0013 30.9 4.2 97 27-131 53-154 (157)
26 PF05276 SH3BP5: SH3 domain-bi 32.5 3.2E+02 0.0068 28.4 9.6 52 545-598 98-149 (239)
27 PF08317 Spc7: Spc7 kinetochor 32.3 2.2E+02 0.0047 30.6 8.9 72 539-611 178-250 (325)
28 PF10368 YkyA: Putative cell-w 30.9 1.7E+02 0.0036 29.6 7.2 77 537-613 31-111 (204)
29 KOG3313 Molecular chaperone Pr 30.7 2.5E+02 0.0054 27.9 7.9 62 552-613 22-86 (187)
30 PF12718 Tropomyosin_1: Tropom 30.2 1.7E+02 0.0038 27.7 6.8 68 538-605 35-108 (143)
31 PF01496 V_ATPase_I: V-type AT 30.0 2.1E+02 0.0045 34.5 9.1 64 548-611 204-271 (759)
32 PF13080 DUF3926: Protein of u 29.3 48 0.001 25.0 2.2 22 587-611 13-34 (44)
33 TIGR03752 conj_TIGR03752 integ 29.0 3.2E+02 0.0069 31.2 9.5 73 535-607 56-135 (472)
34 PF05529 Bap31: B-cell recepto 28.6 1.6E+02 0.0034 29.0 6.5 63 539-602 119-185 (192)
35 PF14712 Snapin_Pallidin: Snap 27.1 1.5E+02 0.0033 25.4 5.5 32 581-612 11-42 (92)
36 PF13234 rRNA_proc-arch: rRNA- 27.1 2.4E+02 0.0052 29.2 7.9 72 539-613 181-264 (268)
37 PF10212 TTKRSYEDQ: Predicted 26.4 3.1E+02 0.0067 31.6 8.9 54 539-603 442-509 (518)
38 KOG0249 LAR-interacting protei 25.6 3.4E+02 0.0074 32.5 9.1 39 572-610 211-249 (916)
39 COG4479 Uncharacterized protei 25.5 1.8E+02 0.0038 24.6 5.1 51 84-134 19-72 (74)
40 PHA00687 hypothetical protein 24.6 1.7E+02 0.0036 22.6 4.4 30 562-591 9-48 (56)
41 PRK14136 recX recombination re 24.6 84 0.0018 33.8 3.9 24 106-129 278-301 (309)
42 PF05335 DUF745: Protein of un 24.4 1.2E+02 0.0027 30.2 4.8 31 566-596 140-177 (188)
43 PF11802 CENP-K: Centromere-as 24.0 5E+02 0.011 27.4 9.3 38 538-575 52-89 (268)
44 PF10158 LOH1CR12: Tumour supp 23.8 2.2E+02 0.0047 26.8 6.1 65 540-605 51-115 (131)
45 PLN03214 probable enoyl-CoA hy 23.6 2.7E+02 0.0058 29.2 7.5 21 596-616 250-270 (278)
46 TIGR02132 phaR_Bmeg polyhydrox 23.6 2.1E+02 0.0046 28.4 6.1 12 588-599 142-153 (189)
47 PF04880 NUDE_C: NUDE protein, 23.4 1E+02 0.0022 30.2 4.0 32 567-599 4-35 (166)
48 PF03961 DUF342: Protein of un 23.0 3.5E+02 0.0076 30.4 8.7 55 539-593 342-398 (451)
49 PF05276 SH3BP5: SH3 domain-bi 22.8 3.9E+02 0.0086 27.7 8.3 75 540-614 144-228 (239)
50 PRK14137 recX recombination re 22.7 1.7E+02 0.0036 29.4 5.5 27 107-133 156-182 (195)
51 PHA02562 46 endonuclease subun 22.6 2.1E+02 0.0047 32.6 7.1 75 537-612 298-372 (562)
52 PRK10884 SH3 domain-containing 22.3 4.5E+02 0.0098 26.6 8.5 71 544-614 92-169 (206)
53 PF15294 Leu_zip: Leucine zipp 22.3 2.2E+02 0.0049 30.2 6.5 61 545-616 190-250 (278)
54 PF05377 FlaC_arch: Flagella a 22.1 2.7E+02 0.0058 22.4 5.3 36 578-613 1-36 (55)
55 PF12718 Tropomyosin_1: Tropom 20.7 3E+02 0.0066 26.1 6.5 59 541-603 10-68 (143)
56 PF06972 DUF1296: Protein of u 20.1 3E+02 0.0064 22.6 5.2 39 83-129 6-44 (60)
57 PF14213 DUF4325: Domain of un 20.0 3.3E+02 0.0071 22.5 5.9 50 223-277 17-68 (74)
No 1
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=1.2e-44 Score=381.03 Aligned_cols=274 Identities=46% Similarity=0.751 Sum_probs=246.1
Q ss_pred ccccCCC--HHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccccchhH
Q 006989 73 SIEDVRN--VEELHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWADMIQWRKDFGTDTILEDFEFSE 150 (622)
Q Consensus 73 siedl~d--~~E~~~V~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRke~~~d~i~~d~~~~e 150 (622)
..+++.+ +.+.+.++++| |+..+++++...+|+.+|||||||++||+++|++||.+++.||+++..+.|+.++ ..
T Consensus 11 ~~~~~~~~~~~~~~~i~~lr-~~~~~~~l~~~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~~--~~ 87 (317)
T KOG1471|consen 11 AKEELNEITESEEAVIAQLR-WLLQKPHLPNKYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFEDF--EE 87 (317)
T ss_pred cccccCCCcHHHHHHHHHHH-HHhhccCCCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhhcc--cc
Confidence 3444444 44577788888 8989999997555557999999999999999999999999999999999998873 33
Q ss_pred HHHHHhhcccccccCCCCCCcEEEEecCccCCccccccCCHHHHHHHHHHHHHHHHHhhcchhhhhhcCCCCcEEEEEeC
Q 006989 151 VNEVLQYYPQGYHGMDKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTILDV 230 (622)
Q Consensus 151 l~~vlk~~p~~~~G~DkeGRPVli~rlg~~dp~kl~~~~t~~~~lk~~v~~~E~~l~~~~~acs~~~~~~i~~~tiIiDl 230 (622)
..++.++++++++|.|++|+||++.+.|..++..++..+...+++++++..+|+.+..+++.|....+++++|+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl 167 (317)
T KOG1471|consen 88 DDELLKYYPQGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDL 167 (317)
T ss_pred chhhhhhccccccccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEEC
Confidence 34466688999999999999999999999999999999999999999999999999999999987778899999999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhhhccccccceEEEEecChhHHHHHHHHhhccChhhhcceEEcCccchHHHHhhcCCC
Q 006989 231 QGVGFKSLTKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVRRFLDPKTTSKIHVLGNKYQSKLLEIIDAS 310 (622)
Q Consensus 231 ~Gvsl~~~~~~~~~~ik~i~kilq~~YPerL~~i~IINaP~~f~~lw~lVKpFLdpkT~~KI~~lg~~~~~~L~e~Id~d 310 (622)
+|+++.|+.......++.++.++|+|||++++++||||+|++|+++|++|||||+++|++||++++.++.++|+++|+++
T Consensus 168 ~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~~~~~L~k~i~~~ 247 (317)
T KOG1471|consen 168 KGVSLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSKDKESLLKYIPPE 247 (317)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCCchhhhhhhCCHh
Confidence 99999999999999999999999999999999999999999999999999999999999999977677889999999999
Q ss_pred CCccccCCCCCCCC---CCCCcCCCCCCCCChhHHHHhhhcc
Q 006989 311 ELPEFLGGSCNCAD---QGGCMRSDKGPWKDPNILQIVLSGE 349 (622)
Q Consensus 311 ~LP~eyGGt~~~~~---~gGcl~~~~gpW~~p~~lk~v~~~~ 349 (622)
+||.+|||+|.+.+ .++|...+.++|.++.+.+......
T Consensus 248 ~LP~~yGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (317)
T KOG1471|consen 248 VLPEEYGGTCGDLDDPNGGGCDLSDEGPWKEPEIKKGKQEIE 289 (317)
T ss_pred hCccccCCCccccccccCCcCccccccccccccccccccccc
Confidence 99999999999963 5679999999999987766554443
No 2
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=1.5e-36 Score=314.78 Aligned_cols=200 Identities=31% Similarity=0.513 Sum_probs=178.3
Q ss_pred CCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccccchhHHHHHHhhcccccccCCCCCCcEEEEecCccCC
Q 006989 103 HDHYHMLLRFLKARKFDIAKATQMWADMIQWRKDFGTDTILEDFEFSEVNEVLQYYPQGYHGMDKEGRPVYIERLGKVDP 182 (622)
Q Consensus 103 ~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRke~~~d~i~~d~~~~el~~vlk~~p~~~~G~DkeGRPVli~rlg~~dp 182 (622)
.+| .+++||||||+||+++|.+|+.++|.||+.+++... ....++..-+..+.+++.|.|++||||+|+++....+
T Consensus 47 ~~d-~cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~~~~---~~~~Ev~~e~~tGK~yi~G~D~~gRPVl~~~~~~~~q 122 (324)
T KOG1470|consen 47 CSD-ACLLRFLRARKWNVKKASKMLSNTLKWRRSFGPEEV---IEADEVAAELETGKAYILGHDKDGRPVLYLRPRPHRQ 122 (324)
T ss_pred CcH-HHHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCCccc---cCHHHHHHHhhcCcEEEecccCCCCeEEEEecCCCCC
Confidence 355 799999999999999999999999999999998662 2345566677789999999999999999997665555
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHHhhcchhhhhhcCCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhhhccccccc
Q 006989 183 NKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTILDVQGVGFKSLTKSARELIMQVQKIDSDNYPETLC 262 (622)
Q Consensus 183 ~kl~~~~t~~~~lk~~v~~~E~~l~~~~~acs~~~~~~i~~~tiIiDl~Gvsl~~~~~~~~~~ik~i~kilq~~YPerL~ 262 (622)
+. .+..++.++.|+++|.++..+ +..++++++++|++|+|++|.+ +.+.+.+++++|+||||||+
T Consensus 123 n~----~t~~~~~r~~Vy~mE~Ai~~l--------p~~qe~~~~L~D~~~fs~sN~d---~~~~k~~~~~lq~hYPErLg 187 (324)
T KOG1470|consen 123 NT----KTQKELERLLVYTLENAILFL--------PPGQEQFVWLFDLTGFSMSNPD---IKFLKELLHILQDHYPERLG 187 (324)
T ss_pred CC----CCHHHHHHHHHHHHHHHHHhC--------CCCcceEEEEEecccCcccCCC---cHHHHHHHHHHHHhChHHhh
Confidence 43 489999999999999999774 4557889999999999999988 88999999999999999999
Q ss_pred eEEEEecChhHHHHHHHHhhccChhhhcceEEcCccchHHHHhhcCCCCCccccCCCCCCC
Q 006989 263 RMFIINAGQGFKLLWNSVRRFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGSCNCA 323 (622)
Q Consensus 263 ~i~IINaP~~f~~lw~lVKpFLdpkT~~KI~~lg~~~~~~L~e~Id~d~LP~eyGGt~~~~ 323 (622)
..+|+|+||+|..+|+++||||||+|++||.|..+. ..|.++||+++||..|||+....
T Consensus 188 ~a~l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~~--~~l~~~~d~~~l~s~~GG~~~~~ 246 (324)
T KOG1470|consen 188 KALLVNAPWIFQPFWKIIKPFLDPKTASKVKFVEPK--DDLSEYFDESQLPSLFGGKLLFE 246 (324)
T ss_pred hhhhcCChHHHHHHHHHhhhccChhhhceeEEecCh--hHHHhhCCccccchhhCCCcccc
Confidence 999999999999999999999999999999999773 56999999999999999987664
No 3
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.96 E-value=6.2e-30 Score=240.99 Aligned_cols=157 Identities=33% Similarity=0.574 Sum_probs=131.0
Q ss_pred HHHhhcccccccCCCCCCcEEEEecCccCCccccccCCHHHHHHHHHHHHHHHHHhhcchhhhhhcCCCCcEEEEEeCCC
Q 006989 153 EVLQYYPQGYHGMDKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTILDVQG 232 (622)
Q Consensus 153 ~vlk~~p~~~~G~DkeGRPVli~rlg~~dp~kl~~~~t~~~~lk~~v~~~E~~l~~~~~acs~~~~~~i~~~tiIiDl~G 232 (622)
++++.++++++|+|++||||+|+++|++|+.. .+.+++++++++.+|.+++...+ ..+++++++|+|++|
T Consensus 2 ~~~~~~~~~~~g~D~~gr~v~~~~~~~~~~~~----~~~~~~~~~~~~~~E~~~~~~~~------~~~~~~~~~iiD~~g 71 (159)
T PF00650_consen 2 EILKSGPFYLHGRDKDGRPVIYIRLGRFDPKK----FSPEDVIRFFVYLLERMLKRMPE------GGQVEGIVVIIDLSG 71 (159)
T ss_dssp HHHTTSCEEEEEE-TTS-EEEEEEGTT--HHT----S-HHHHHHHHHHHHHHHHHTHHH------TSHHH-EEEEEE-TT
T ss_pred HHHCCeeEEECCCCCCcCEEEEEEcccCCCCc----CCHHHHHHHHHHHHHHHHhhhcc------cccceeEEEEEeCCC
Confidence 36788999999999999999999999999985 36899999999999999865211 367899999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhhhccccccceEEEEecChhHHHHHHHHhhccChhhhcceEEcCc-cchHHHHhhcCCCC
Q 006989 233 VGFKSLTKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVRRFLDPKTTSKIHVLGN-KYQSKLLEIIDASE 311 (622)
Q Consensus 233 vsl~~~~~~~~~~ik~i~kilq~~YPerL~~i~IINaP~~f~~lw~lVKpFLdpkT~~KI~~lg~-~~~~~L~e~Id~d~ 311 (622)
+++++++....++++.+++++|++||+|++++||||+|++|+++|+++++||+++|++||+++++ ++.++|.++||+++
T Consensus 72 ~~~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~~ 151 (159)
T PF00650_consen 72 FSLSNFDWWPISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPEQ 151 (159)
T ss_dssp --HHHHHCHHHHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGGG
T ss_pred ceEeccccchhhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccHHHHHhhCCHhH
Confidence 99998875558999999999999999999999999999999999999999999999999999964 55579999999999
Q ss_pred CccccCCC
Q 006989 312 LPEFLGGS 319 (622)
Q Consensus 312 LP~eyGGt 319 (622)
||.+|||+
T Consensus 152 lP~~~GG~ 159 (159)
T PF00650_consen 152 LPVEYGGT 159 (159)
T ss_dssp SBGGGTSS
T ss_pred CchhcCCC
Confidence 99999997
No 4
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.95 E-value=2.4e-27 Score=223.21 Aligned_cols=154 Identities=38% Similarity=0.645 Sum_probs=139.6
Q ss_pred HHhhcccccccCCCCCCcEEEEecCccCCccccccCCHHHHHHHHHHHHHHHHHhhcchhhhhhcCCCCcEEEEEeCCCC
Q 006989 154 VLQYYPQGYHGMDKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTILDVQGV 233 (622)
Q Consensus 154 vlk~~p~~~~G~DkeGRPVli~rlg~~dp~kl~~~~t~~~~lk~~v~~~E~~l~~~~~acs~~~~~~i~~~tiIiDl~Gv 233 (622)
...++++++ |+|++||||+|+++++++++. .+.+++++++++.+|.++... ....++.++++|+|++|+
T Consensus 5 ~~~~~~~~~-g~D~~GrpV~~~~~~~~~~~~----~~~~~~~~~~~~~~e~~~~~~------~~~~~~~~~~~i~D~~~~ 73 (158)
T smart00516 5 GKAYIPGGR-GYDKDGRPVLIFRAGRFDLKS----VTLEELLRYLVYVLEKILQRE------KKTGGIEGFTVIFDLKGL 73 (158)
T ss_pred HHHhcCCCC-CCCCCcCEEEEEeccccccCc----CCHHHHHHHHHHHHHHHHHHH------hcCCCeeeEEEEEECCCC
Confidence 455667777 999999999999999998765 589999999999999988641 135678999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHhhhccccccceEEEEecChhHHHHHHHHhhccChhhhcceEEcCccchHHHHhhcCCCCCc
Q 006989 234 GFKSLTKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVRRFLDPKTTSKIHVLGNKYQSKLLEIIDASELP 313 (622)
Q Consensus 234 sl~~~~~~~~~~ik~i~kilq~~YPerL~~i~IINaP~~f~~lw~lVKpFLdpkT~~KI~~lg~~~~~~L~e~Id~d~LP 313 (622)
++++++ .+.++.++++++++||++++++||+|+|++++++|+++++|+++++++||+++++++.+.|.++||+++||
T Consensus 74 ~~~~~~---~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~L~~~i~~~~lP 150 (158)
T smart00516 74 SMSNPD---LSVLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYIDPEQLP 150 (158)
T ss_pred Cccccc---HHHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCCCCHHHHHhhCCHhhCc
Confidence 999866 78999999999999999999999999999999999999999999999999999987778999999999999
Q ss_pred cccCCCCC
Q 006989 314 EFLGGSCN 321 (622)
Q Consensus 314 ~eyGGt~~ 321 (622)
.+|||+|.
T Consensus 151 ~~~GG~~~ 158 (158)
T smart00516 151 EELGGTLD 158 (158)
T ss_pred HhhCCCCC
Confidence 99999973
No 5
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.92 E-value=1.7e-24 Score=200.73 Aligned_cols=146 Identities=39% Similarity=0.605 Sum_probs=129.8
Q ss_pred ccccCCCCCCcEEEEecCccCCccccccCCHHHHHHHHHHHHHHHHHhhcchhhhhhcCCCCcEEEEEeCCCCCCCCCCh
Q 006989 161 GYHGMDKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTILDVQGVGFKSLTK 240 (622)
Q Consensus 161 ~~~G~DkeGRPVli~rlg~~dp~kl~~~~t~~~~lk~~v~~~E~~l~~~~~acs~~~~~~i~~~tiIiDl~Gvsl~~~~~ 240 (622)
+..|+|++||||++++++..++... ...+++++++++.+|..+.... ....++++|+|++|+++.++.
T Consensus 12 ~~~~~D~~gr~V~~~~~~~~~~~~~---~~~~~~~~~~~~~~e~~~~~~~--------~~~~~~~~i~D~~~~~~~~~~- 79 (157)
T cd00170 12 YLGGRDKEGRPVLIIRAGNKDLSKS---LDSEELLRYLVYTLEKLLQEDD--------EQVEGFVVIIDLKGLSLSHLL- 79 (157)
T ss_pred ccCCCCCCcCEEEEEecCCcchhhc---CCHHHHHHHHHHHHHHHHhhhh--------hcccceEEEEECCCCChhccc-
Confidence 3345799999999999997666543 2459999999999999887532 223799999999999999997
Q ss_pred HHHHHHHHHHHHhhhccccccceEEEEecChhHHHHHHHHhhccChhhhcceEEcCccchHHHHhhcCCCCCccccCCC
Q 006989 241 SARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVRRFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGS 319 (622)
Q Consensus 241 ~~~~~ik~i~kilq~~YPerL~~i~IINaP~~f~~lw~lVKpFLdpkT~~KI~~lg~~~~~~L~e~Id~d~LP~eyGGt 319 (622)
...+.++.++++++++||++++++||||+|++|+.+|+++++|+++++++||++++++ .++|.++||+++||.+|||+
T Consensus 80 ~~~~~~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~-~~~L~~~i~~~~Lp~~~GG~ 157 (157)
T cd00170 80 PDPSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSD-KEELLKYIDKEQLPEEYGGT 157 (157)
T ss_pred hhHHHHHHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCC-HHHHHhhCChhhCcHhhCCC
Confidence 6689999999999999999999999999999999999999999999999999999876 68999999999999999996
No 6
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.34 E-value=3.2e-13 Score=127.12 Aligned_cols=139 Identities=24% Similarity=0.368 Sum_probs=94.3
Q ss_pred cccCCCCCCcEEEEecCccCCccccccCCHHHHHHHHHHHHHHHHHhhcchhhhhhcCCCCcEEEEEeCCCCCCCCCChH
Q 006989 162 YHGMDKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTILDVQGVGFKSLTKS 241 (622)
Q Consensus 162 ~~G~DkeGRPVli~rlg~~dp~kl~~~~t~~~~lk~~v~~~E~~l~~~~~acs~~~~~~i~~~tiIiDl~Gvsl~~~~~~ 241 (622)
..|+|++||||+++....+ +.. ...+.++.|++..+... -...++++|+|++|.+..+-.
T Consensus 6 ~gG~d~~g~pV~~~~~~~~-~~~----~~~~~ll~yl~~~l~~~-------------~~~~~f~vVid~~~~~~~~~~-- 65 (149)
T PF13716_consen 6 PGGRDREGRPVVVFIASRL-PSS----DDLERLLLYLLSTLSEE-------------VVDKPFSVVIDHTGFSRSSEP-- 65 (149)
T ss_dssp EEEEBTTS-EEEEEEGGG--C-T----THHHHHHHHHHHHH-TT-------------TTTS-EEEEEE-TT--GGG----
T ss_pred ecccCCCcCEEEEEECCcC-cch----hhHHHHHHHHHHhhhHH-------------hcCCCEEEEEEcCCCccccCC--
Confidence 4589999999999998777 432 25666666665554211 113469999999999875432
Q ss_pred HHHHHHHHHHHhhhccccccceEEEEecChhHHHHH-HHHhhccChhh-hcceEEcCccchHHHHhhcCCCCCccccCCC
Q 006989 242 ARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLW-NSVRRFLDPKT-TSKIHVLGNKYQSKLLEIIDASELPEFLGGS 319 (622)
Q Consensus 242 ~~~~ik~i~kilq~~YPerL~~i~IINaP~~f~~lw-~lVKpFLdpkT-~~KI~~lg~~~~~~L~e~Id~d~LP~eyGGt 319 (622)
....++++.+.+...|+..|+++||||++++++.++ .+.+++++.+. ..||+++.+ .++|.++||+++||..+||+
T Consensus 66 ~~~~l~~~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~s--l~~L~~~i~~~qL~~~lp~~ 143 (149)
T PF13716_consen 66 SLSWLKQLYKLLPRKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSS--LSELSKHIDPSQLPESLPGV 143 (149)
T ss_dssp -HHHHHHTTTSS-HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESS--TCGGGGTSGGGG------HH
T ss_pred chHHHHHHHHHHHHHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECC--HHHHHhhCCHHHhcccCCCE
Confidence 378899999999999999999999999999999999 56677778888 899999965 68999999999999999998
Q ss_pred CCC
Q 006989 320 CNC 322 (622)
Q Consensus 320 ~~~ 322 (622)
...
T Consensus 144 ~~~ 146 (149)
T PF13716_consen 144 LQY 146 (149)
T ss_dssp H--
T ss_pred Eec
Confidence 654
No 7
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=98.63 E-value=4.7e-08 Score=77.29 Aligned_cols=47 Identities=36% Similarity=0.525 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhC--------CCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006989 83 LHAVDAFRRVLISE--------ELLPARHDHYHMLLRFLKARKFDIAKATQMWADM 130 (622)
Q Consensus 83 ~~~V~efRq~L~~~--------~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~ 130 (622)
+++|++|++.|... ......++| .+||||||||+||+++|.+||.+|
T Consensus 1 k~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d-~~llRFLRARkf~v~~A~~mL~~t 55 (55)
T PF03765_consen 1 KQKLKQLREHLSELDEKAPGLWDDEKEDHDD-NFLLRFLRARKFDVEKAFKMLKKT 55 (55)
T ss_dssp HHHHHHHHHHHHH--GGGTHHHTTHTSS-SH-HHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccchhcccccccCCCCH-HHHHHHHHHccCCHHHHHHHHHhC
Confidence 46899999999873 344556777 699999999999999999999875
No 8
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=98.19 E-value=6.7e-06 Score=88.24 Aligned_cols=127 Identities=20% Similarity=0.279 Sum_probs=99.4
Q ss_pred CCCCCCcEEEEecCccCCccccccCCHHHHHHHHHHHHHHHHHhhcchhhhhhcCCCCcEEEEEeCCCCCCCCCChHHHH
Q 006989 165 MDKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTILDVQGVGFKSLTKSARE 244 (622)
Q Consensus 165 ~DkeGRPVli~rlg~~dp~kl~~~~t~~~~lk~~v~~~E~~l~~~~~acs~~~~~~i~~~tiIiDl~Gvsl~~~~~~~~~ 244 (622)
.|++||+|+++-..++.+..- ..-.++++|.++.++..++. .++.+.=-.|+...+.+ .+.
T Consensus 89 ~D~~gr~iivv~a~rlp~~~e---ld~~~li~~~v~~id~~Ve~--------------DYt~vYfh~gl~s~nkp--~l~ 149 (467)
T KOG4406|consen 89 KDKQGRKIIVVYACRLPSSSE---LDDIRLISYLVYTIDKYVEN--------------DYTLVYFHHGLPSDNKP--YLQ 149 (467)
T ss_pred ccccCCeeEEEEEecCCchhh---hhhHHHHHHHHHHHHHHHhc--------------cceeeehhcCCcccccc--hHH
Confidence 699999999998888776541 11223899999999998864 25555555566555443 466
Q ss_pred HHHHHHHHhhhccccccceEEEEecChhHHHHHHHHhhccChhhhcceEEcCccchHHHHhhcCCCCC
Q 006989 245 LIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVRRFLDPKTTSKIHVLGNKYQSKLLEIIDASEL 312 (622)
Q Consensus 245 ~ik~i~kilq~~YPerL~~i~IINaP~~f~~lw~lVKpFLdpkT~~KI~~lg~~~~~~L~e~Id~d~L 312 (622)
++....+-+..+|--.++.+|+|++-|+.+++|+++|||++.|...||+.+ ++.++|.++|.-+.|
T Consensus 150 ~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~--n~lseL~~~l~l~rL 215 (467)
T KOG4406|consen 150 LLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYF--NSLSELFEALKLNRL 215 (467)
T ss_pred HHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEe--ehHHHHHHhhhhhhh
Confidence 666666666778999999999999999999999999999999999999999 557999999885554
No 9
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=78.86 E-value=1.8 Score=35.95 Aligned_cols=25 Identities=32% Similarity=0.582 Sum_probs=22.1
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhc
Q 006989 534 FTEADFLSPVLKRLAELEQKVDMLQ 558 (622)
Q Consensus 534 ~~~~~~~~~~~~rl~~lEekv~~L~ 558 (622)
++++|+|..+.+||.++|+||+...
T Consensus 11 ~v~~~dfne~~kRLdeieekvef~~ 35 (75)
T COG4064 11 VVDPDDFNEIHKRLDEIEEKVEFVN 35 (75)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhhH
Confidence 5789999999999999999998643
No 10
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=75.61 E-value=2.4 Score=35.18 Aligned_cols=25 Identities=44% Similarity=0.760 Sum_probs=22.0
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhc
Q 006989 534 FTEADFLSPVLKRLAELEQKVDMLQ 558 (622)
Q Consensus 534 ~~~~~~~~~~~~rl~~lEekv~~L~ 558 (622)
+++.+++..+++||.++||||+.-+
T Consensus 8 ~v~~~d~~~i~~rLd~iEeKVEf~~ 32 (70)
T TIGR01149 8 FVEPDEFNEVMKRLDEIEEKVEFVN 32 (70)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999999998643
No 11
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=75.13 E-value=2.9 Score=35.54 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.2
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhc
Q 006989 534 FTEADFLSPVLKRLAELEQKVDMLQ 558 (622)
Q Consensus 534 ~~~~~~~~~~~~rl~~lEekv~~L~ 558 (622)
+++.++|..+++||.++||||+.-+
T Consensus 11 iv~~~d~~~i~~rLD~iEeKVEftn 35 (77)
T PRK01026 11 VVDPKDFKEIQKRLDEIEEKVEFTN 35 (77)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999998643
No 12
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=72.03 E-value=3.3 Score=34.45 Aligned_cols=25 Identities=32% Similarity=0.615 Sum_probs=21.8
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhc
Q 006989 534 FTEADFLSPVLKRLAELEQKVDMLQ 558 (622)
Q Consensus 534 ~~~~~~~~~~~~rl~~lEekv~~L~ 558 (622)
+++.++|..+++||.++|+||+.-+
T Consensus 8 iv~~~~~~~i~~rLd~iEeKvEf~~ 32 (70)
T PF04210_consen 8 IVDPDDFNEIMKRLDEIEEKVEFTN 32 (70)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHhHH
Confidence 4689999999999999999997543
No 13
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=61.01 E-value=27 Score=26.06 Aligned_cols=36 Identities=17% Similarity=0.400 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 006989 84 HAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWA 128 (622)
Q Consensus 84 ~~V~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~ 128 (622)
+.|.+|..... .++ ..-..||.+++||++.|+..+-
T Consensus 2 e~i~~F~~iTg--------~~~-~~A~~~L~~~~wdle~Av~~y~ 37 (43)
T PF14555_consen 2 EKIAQFMSITG--------ADE-DVAIQYLEANNWDLEAAVNAYF 37 (43)
T ss_dssp HHHHHHHHHH---------SSH-HHHHHHHHHTTT-HHHHHHHHH
T ss_pred HHHHHHHHHHC--------cCH-HHHHHHHHHcCCCHHHHHHHHH
Confidence 56788887762 133 4689999999999999998763
No 14
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=54.61 E-value=95 Score=27.93 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 006989 479 WASLIAFFITLITLARS 495 (622)
Q Consensus 479 ~~~~~~~~~~~~~~~~~ 495 (622)
|..+.|++..+++++..
T Consensus 9 w~ii~a~~~~~~~~~~~ 25 (106)
T PF10805_consen 9 WGIIWAVFGIAGGIFWL 25 (106)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 45566666666666663
No 15
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=54.50 E-value=37 Score=25.06 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 006989 84 HAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWAD 129 (622)
Q Consensus 84 ~~V~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~ 129 (622)
+.|++|++.. |. .+. ..+..-|.++++|++.|..+|-+
T Consensus 3 ~~v~~L~~mF------P~-~~~-~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 3 EMVQQLQEMF------PD-LDR-EVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHHHS------SS-S-H-HHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHC------CC-CCH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 4566666654 33 444 57889999999999999998854
No 16
>PHA01750 hypothetical protein
Probab=46.11 E-value=99 Score=25.69 Aligned_cols=42 Identities=26% Similarity=0.359 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006989 570 ELLDAAVYRVDALEAELIATKKALYEALMRQEELLAYIDSQERA 613 (622)
Q Consensus 570 e~Lnaa~~Rvd~le~~l~~tkkaL~~al~kQ~El~ayie~~k~~ 613 (622)
.+|.+|+.-| +-+||.--++-++++-.||.+|-+-++..|++
T Consensus 30 q~lkdAvkeI--V~~ELdNL~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 30 QALKDAVKEI--VNSELDNLKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 5677777654 56788888888888889999998888777654
No 17
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=45.79 E-value=54 Score=24.23 Aligned_cols=38 Identities=13% Similarity=0.292 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 006989 84 HAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWAD 129 (622)
Q Consensus 84 ~~V~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~ 129 (622)
+.+++|++.. |. .++ ..+.+-|+++++|++.|.+.|.+
T Consensus 4 ~~v~~L~~mF------P~-l~~-~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 4 EALHDLKDMF------PN-LDE-EVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred HHHHHHHHHC------CC-CCH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 4566666554 43 444 46889999999999999988753
No 18
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=42.99 E-value=72 Score=31.53 Aligned_cols=74 Identities=23% Similarity=0.285 Sum_probs=41.8
Q ss_pred ccccHHHHHHHHHHHHHHHHHhc-----------CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006989 536 EADFLSPVLKRLAELEQKVDMLQ-----------EKPTQMPFEKEELLDAAVYRVDALEAELIATKKALYEALMRQEELL 604 (622)
Q Consensus 536 ~~~~~~~~~~rl~~lEekv~~L~-----------~KP~~mP~EKEe~Lnaa~~Rvd~le~~l~~tkkaL~~al~kQ~El~ 604 (622)
+.+++..+-.|+-.||+||+.|. ..--.=|.+|+++ +.-=.||.+||.-+.+-=.+|+-----|.||-
T Consensus 70 Sr~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v-~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~ 148 (189)
T TIGR02132 70 TKEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDV-TKLKQDIKSLDKKLDKILELLEGQQKTQDELK 148 (189)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHH-HHHHHHHHHHHHHHHHHHHHHhcCccchhHHH
Confidence 34566666676666666665543 2222456677663 55556777777777666666653333344444
Q ss_pred HHHHHH
Q 006989 605 AYIDSQ 610 (622)
Q Consensus 605 ayie~~ 610 (622)
+.|.++
T Consensus 149 ~~~~~~ 154 (189)
T TIGR02132 149 ETIQKQ 154 (189)
T ss_pred HHHHHH
Confidence 444433
No 19
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=42.77 E-value=1.1e+02 Score=31.37 Aligned_cols=73 Identities=23% Similarity=0.194 Sum_probs=48.9
Q ss_pred ccHHHHHHHHHHHHHH-----HHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006989 538 DFLSPVLKRLAELEQK-----VDMLQEKPTQMPFEKEELLDAAVYRVDALEAELIATKKALYEALMRQEELLAYIDSQ 610 (622)
Q Consensus 538 ~~~~~~~~rl~~lEek-----v~~L~~KP~~mP~EKEe~Lnaa~~Rvd~le~~l~~tkkaL~~al~kQ~El~ayie~~ 610 (622)
+.++..+.+|..|++- -+....++.+=+-.+|+=........+-||.||+++++.|+.+-.+=.+|.-+.|..
T Consensus 114 ~R~~~ll~~l~~l~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~ 191 (216)
T KOG1962|consen 114 RRLHTLLRELATLRANEKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGL 191 (216)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456678888888871 222233334344445676777788899999999999999987655555555555443
No 20
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=41.81 E-value=1.9e+02 Score=30.93 Aligned_cols=65 Identities=31% Similarity=0.344 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006989 540 LSPVLKRLAELEQKVDMLQEKPTQMPFEKEELLDAAVYRVDALEAELIATKKALYEALMRQEELLAYIDSQERA 613 (622)
Q Consensus 540 ~~~~~~rl~~lEekv~~L~~KP~~mP~EKEe~Lnaa~~Rvd~le~~l~~tkkaL~~al~kQ~El~ayie~~k~~ 613 (622)
+.+.=+.+.+||.+..+. ..|+++|.=| |.+|.-|+.+|...+|++....--| ||.+-|+..+.+
T Consensus 109 ~~~ler~i~~Le~~~~T~-----~L~~e~E~~l---vq~I~~L~k~le~~~k~~e~~~~~~-el~aei~~lk~~ 173 (294)
T COG1340 109 IKSLEREIERLEKKQQTS-----VLTPEEEREL---VQKIKELRKELEDAKKALEENEKLK-ELKAEIDELKKK 173 (294)
T ss_pred HHHHHHHHHHHHHHHHhc-----CCChHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 577778899999998874 4688888766 6778889999999999999988775 566666666543
No 21
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=39.43 E-value=1.9e+02 Score=32.39 Aligned_cols=91 Identities=21% Similarity=0.315 Sum_probs=66.5
Q ss_pred CCCCCcEEEEecCccCCccccccCCHHHHHHHHHHHHHHHHHhhcchhhhhhcCCCCcEEEEEeCCCCCCCCCCh-----
Q 006989 166 DKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTILDVQGVGFKSLTK----- 240 (622)
Q Consensus 166 DkeGRPVli~rlg~~dp~kl~~~~t~~~~lk~~v~~~E~~l~~~~~acs~~~~~~i~~~tiIiDl~Gvsl~~~~~----- 240 (622)
|.+..|++++.+|... .+.+.|+++++....+ ..--++|++-.|++-..+..
T Consensus 121 ~~~~~P~vvilpGltg-------~S~~~YVr~lv~~a~~----------------~G~r~VVfN~RG~~g~~LtTpr~f~ 177 (409)
T KOG1838|consen 121 DDGTDPIVVILPGLTG-------GSHESYVRHLVHEAQR----------------KGYRVVVFNHRGLGGSKLTTPRLFT 177 (409)
T ss_pred CCCCCcEEEEecCCCC-------CChhHHHHHHHHHHHh----------------CCcEEEEECCCCCCCCccCCCceee
Confidence 3456799999999644 3578999988754322 11457889999977665532
Q ss_pred -HHHHHHHHHHHHhhhccccccceEEEEecChhHHHHHHHHh
Q 006989 241 -SARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVR 281 (622)
Q Consensus 241 -~~~~~ik~i~kilq~~YPerL~~i~IINaP~~f~~lw~lVK 281 (622)
...+-++.+++.+...||.+ +++.+-.+.+-.++||-+-
T Consensus 178 ag~t~Dl~~~v~~i~~~~P~a--~l~avG~S~Gg~iL~nYLG 217 (409)
T KOG1838|consen 178 AGWTEDLREVVNHIKKRYPQA--PLFAVGFSMGGNILTNYLG 217 (409)
T ss_pred cCCHHHHHHHHHHHHHhCCCC--ceEEEEecchHHHHHHHhh
Confidence 12456788888999999998 8999999999999987443
No 22
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=38.76 E-value=1.2e+02 Score=35.68 Aligned_cols=64 Identities=28% Similarity=0.380 Sum_probs=42.1
Q ss_pred ccHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006989 538 DFLSPVLKRLAELEQKVDMLQEKPTQMPFEKEELLDAAVYRVDALEAELIATKKALYEALMRQEEL 603 (622)
Q Consensus 538 ~~~~~~~~rl~~lEekv~~L~~KP~~mP~EKEe~Lnaa~~Rvd~le~~l~~tkkaL~~al~kQ~El 603 (622)
..+..+.+++.+||+..+.|..|=...|.+ +-+..-..+++.++.++.+.+..+.....+-+++
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~--e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~ 454 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSE--EQIAQLLEELGEAQNELFRSEAEIEELLRQLETL 454 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999998877764 2444445555555555555555444443333333
No 23
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=37.09 E-value=98 Score=24.86 Aligned_cols=14 Identities=29% Similarity=0.582 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHhcC
Q 006989 546 RLAELEQKVDMLQE 559 (622)
Q Consensus 546 rl~~lEekv~~L~~ 559 (622)
|+.|||.++..|.+
T Consensus 1 Ri~elEn~~~~~~~ 14 (55)
T PF05377_consen 1 RIDELENELPRIES 14 (55)
T ss_pred CHHHHHHHHHHHHH
Confidence 34455555444443
No 24
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=35.20 E-value=1.3e+02 Score=37.79 Aligned_cols=46 Identities=28% Similarity=0.441 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCChhHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 006989 540 LSPVLKRLAELEQKVDMLQEKPTQMPFEKEEL---LDAAVYRVDALEAELIATKKAL 593 (622)
Q Consensus 540 ~~~~~~rl~~lEekv~~L~~KP~~mP~EKEe~---Lnaa~~Rvd~le~~l~~tkkaL 593 (622)
+..-++.++.|++++.+++ |+|+| |+.++.+.+..|++|..+.+||
T Consensus 443 l~~~~~~~~~~~~~~~~~~--------~~~~~~keL~e~i~~lk~~~~el~~~q~~l 491 (1317)
T KOG0612|consen 443 LVNEMQEKEKLDEKCQAVA--------ELEEMDKELEETIEKLKSEESELQREQKAL 491 (1317)
T ss_pred hhhHHHHhhhHHHHHHHHh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666899999999999998 77887 8999999999999999877776
No 25
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=33.48 E-value=58 Score=30.89 Aligned_cols=97 Identities=15% Similarity=0.204 Sum_probs=50.0
Q ss_pred cCCCCChhHHh--hhhhhhhHHhhhhccccchhhhhcccccccccc-ccccccCCCHHHHHHHHHHHHHHHhCCCCCCCC
Q 006989 27 SDFDNSEDDRK--TRMRNLKKKAIKASSKLKPSFKKKSRRKSVERV-PVSIEDVRNVEELHAVDAFRRVLISEELLPARH 103 (622)
Q Consensus 27 ~~~~~s~d~~~--~~~~~~~~~a~~~~~~~~~s~~kk~~r~~~~~~-~~siedl~d~~E~~~V~efRq~L~~~~~Lp~~~ 103 (622)
.+...-+|++- .-+.+.+.+ -....+++..|++||= ...+ .-.++++.+++++.+...+...... . ...
T Consensus 53 ~~~~~ldD~~~a~~~~~~~~~~-~~g~~~I~~~L~~kGi---~~~~I~~~l~~~~~d~~e~a~~~~~k~~~~---~-~~~ 124 (157)
T PRK00117 53 KEEGLLDDERFAESFVRSRARK-GYGPRRIRQELRQKGV---DREIIEEALAELDIDWEELARELARKKFRR---P-LPD 124 (157)
T ss_pred HHcCCCCHHHHHHHHHHHHHhC-CchHHHHHHHHHHcCC---CHHHHHHHHHHcCccHHHHHHHHHHHHcCC---C-CCC
Confidence 34445666662 223332111 1234568888988883 3333 4445555422222222322222211 1 111
Q ss_pred C--cHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 006989 104 D--HYHMLLRFLKARKFDIAKATQMWADMI 131 (622)
Q Consensus 104 d--D~~~LLRFLrArkfDvekA~~~l~~~l 131 (622)
+ .-.-+.+||..++|+.+.+...|...+
T Consensus 125 ~~~~k~Ki~~~L~rkGF~~~~I~~~l~~~~ 154 (157)
T PRK00117 125 DAKEKAKLVRFLARRGFSMDVIQRVLRNAL 154 (157)
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHhhh
Confidence 1 124689999999999998877776643
No 26
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=32.50 E-value=3.2e+02 Score=28.42 Aligned_cols=52 Identities=17% Similarity=0.089 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006989 545 KRLAELEQKVDMLQEKPTQMPFEKEELLDAAVYRVDALEAELIATKKALYEALM 598 (622)
Q Consensus 545 ~rl~~lEekv~~L~~KP~~mP~EKEe~Lnaa~~Rvd~le~~l~~tkkaL~~al~ 598 (622)
..++-+|+.+..-+. ..+=+..-||||.|+.||..-|++-......-.....
T Consensus 98 e~v~laEq~l~~~~~--~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~ 149 (239)
T PF05276_consen 98 EMVALAEQSLMSDSN--WTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRAR 149 (239)
T ss_pred HHHHHHHHHHhcCCc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778887776444 5688999999999999999998888777766554433
No 27
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=32.30 E-value=2.2e+02 Score=30.64 Aligned_cols=72 Identities=29% Similarity=0.335 Sum_probs=44.5
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006989 539 FLSPVLKRLAELEQKVDMLQEKPTQMP-FEKEELLDAAVYRVDALEAELIATKKALYEALMRQEELLAYIDSQE 611 (622)
Q Consensus 539 ~~~~~~~rl~~lEekv~~L~~KP~~mP-~EKEe~Lnaa~~Rvd~le~~l~~tkkaL~~al~kQ~El~ayie~~k 611 (622)
.+-.+..|.+.|++.+..|...+.++= +++ +-|+++=.++.+++.++.+-|+-|.+.=.+=.++-+-|+..+
T Consensus 178 ~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~-~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~ 250 (325)
T PF08317_consen 178 LLPKLRERKAELEEELENLKQLVEEIESCDQ-EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELE 250 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888899998888887655 334 345555566666666666655555554444444444444444
No 28
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=30.87 E-value=1.7e+02 Score=29.56 Aligned_cols=77 Identities=32% Similarity=0.303 Sum_probs=54.8
Q ss_pred cccHHHHHHHHHHHHHHHHHhcCCCCCCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006989 537 ADFLSPVLKRLAELEQKVDMLQEKPTQMP----FEKEELLDAAVYRVDALEAELIATKKALYEALMRQEELLAYIDSQER 612 (622)
Q Consensus 537 ~~~~~~~~~rl~~lEekv~~L~~KP~~mP----~EKEe~Lnaa~~Rvd~le~~l~~tkkaL~~al~kQ~El~ayie~~k~ 612 (622)
+..+....+-|.+||++...|-.+=-+.. .+=......|+.-|+.=|..|.+-|++|..+--....+-.||++-+.
T Consensus 31 Ek~~~~~~k~L~~lE~~~q~lY~~ii~~~~~d~~~v~~~~~~a~~nv~~R~k~l~~Ek~ai~~a~~e~~~~~~~i~ki~d 110 (204)
T PF10368_consen 31 EKPFKEQQKKLNELEKKEQELYEQIIQLGKDDNDEVKKLSDEALKNVDEREKELKKEKEAIEKAKEEFKKAKKYIDKIED 110 (204)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTTGG---G-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34578889999999999999988853333 45567888999999999999999999999999988888899887664
Q ss_pred h
Q 006989 613 A 613 (622)
Q Consensus 613 ~ 613 (622)
.
T Consensus 111 ~ 111 (204)
T PF10368_consen 111 E 111 (204)
T ss_dssp H
T ss_pred h
Confidence 4
No 29
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=30.66 E-value=2.5e+02 Score=27.89 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=53.7
Q ss_pred HHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Q 006989 552 QKVDMLQEKPTQMPFEKEELLDAAVYRVDALEAELIATKKALYE---ALMRQEELLAYIDSQERA 613 (622)
Q Consensus 552 ekv~~L~~KP~~mP~EKEe~Lnaa~~Rvd~le~~l~~tkkaL~~---al~kQ~El~ayie~~k~~ 613 (622)
|-|+...+||.--+.++..+++...---+-+|.-|.++++.|.+ .+.+=.||+.++.+++.+
T Consensus 22 edV~s~~~qp~~~~~~~l~~~~E~~~kYkfme~~l~a~~~~l~~kIPd~entLeiv~~l~~~~~~ 86 (187)
T KOG3313|consen 22 EDVESYISQPELESLEALKKLQERYGKYKFMEASLLAQKRRLKTKIPDIENTLEIVQTLIAKKDE 86 (187)
T ss_pred HHHHHHHcCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhCccc
Confidence 45778889999999999999999999999999999999999986 456778888888776543
No 30
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=30.22 E-value=1.7e+02 Score=27.72 Aligned_cols=68 Identities=25% Similarity=0.267 Sum_probs=46.2
Q ss_pred ccHHHHHHHHHHHHHHHHHhcCCCCCC---ChhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006989 538 DFLSPVLKRLAELEQKVDMLQEKPTQM---PFEKEELL---DAAVYRVDALEAELIATKKALYEALMRQEELLA 605 (622)
Q Consensus 538 ~~~~~~~~rl~~lEekv~~L~~KP~~m---P~EKEe~L---naa~~Rvd~le~~l~~tkkaL~~al~kQ~El~a 605 (622)
.++.++-+|++.||.-|+.+..+=.+. ..+.+... -+.-+||..||.||..+-+.|-+|..|=.+.-.
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~ 108 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADV 108 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777788888877777776553322 22333322 235678999999999999999999877665543
No 31
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=29.99 E-value=2.1e+02 Score=34.48 Aligned_cols=64 Identities=20% Similarity=0.264 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCCCCCChh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 006989 548 AELEQKVDMLQEKPTQMPFE---KEELLDAAVYRVDALEAELIATKKALYEALMRQ-EELLAYIDSQE 611 (622)
Q Consensus 548 ~~lEekv~~L~~KP~~mP~E---KEe~Lnaa~~Rvd~le~~l~~tkkaL~~al~kQ-~El~ayie~~k 611 (622)
.++++-+..++-..-.+|.. -++++++--.|++.++++++.|++.|.+.+.+- ++|.++-+..+
T Consensus 204 ~kv~~il~~~~f~~~~~p~~~~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~ 271 (759)
T PF01496_consen 204 EKVKKILRSFGFERYDLPEDEGTPEEAIKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYEYLR 271 (759)
T ss_dssp HHHHHHHHTTT--B----GGGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCceecCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888888888764 468999999999999999999999999776653 44555444443
No 32
>PF13080 DUF3926: Protein of unknown function (DUF3926)
Probab=29.25 E-value=48 Score=25.02 Aligned_cols=22 Identities=36% Similarity=0.427 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006989 587 IATKKALYEALMRQEELLAYIDSQE 611 (622)
Q Consensus 587 ~~tkkaL~~al~kQ~El~ayie~~k 611 (622)
+.+|++|. +-||||.+|...++
T Consensus 13 QsAkqmln---ILQEELssy~~E~~ 34 (44)
T PF13080_consen 13 QSAKQMLN---ILQEELSSYPQEQP 34 (44)
T ss_pred HHHHHHHH---HHHHHHHhchhhcc
Confidence 46788876 67999999997665
No 33
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=28.98 E-value=3.2e+02 Score=31.19 Aligned_cols=73 Identities=21% Similarity=0.268 Sum_probs=50.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHH--HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006989 535 TEADFLSPVLKRLAELEQKVDMLQEKPTQMPFEKEELLD--AAV-----YRVDALEAELIATKKALYEALMRQEELLAYI 607 (622)
Q Consensus 535 ~~~~~~~~~~~rl~~lEekv~~L~~KP~~mP~EKEe~Ln--aa~-----~Rvd~le~~l~~tkkaL~~al~kQ~El~ayi 607 (622)
+..|.+..++-++.+|+.++..|...-...=.|.|+|-+ .++ .+|++-..||......|.+...+...++.-+
T Consensus 56 TP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 56 TPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999999998876666667776644 111 2344555666666666766655555555444
No 34
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=28.61 E-value=1.6e+02 Score=29.02 Aligned_cols=63 Identities=29% Similarity=0.424 Sum_probs=36.5
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006989 539 FLSPVLKRLAELEQKVDMLQEKPTQMPFEKEELL----DAAVYRVDALEAELIATKKALYEALMRQEE 602 (622)
Q Consensus 539 ~~~~~~~rl~~lEekv~~L~~KP~~mP~EKEe~L----naa~~Rvd~le~~l~~tkkaL~~al~kQ~E 602 (622)
.+.++++++..+|+++..+..+...--..+++.+ ...-.-|+.|+.||.++++-+ ++|-+|-|
T Consensus 119 r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~-~~LkkQ~~ 185 (192)
T PF05529_consen 119 RVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEI-EALKKQSE 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4567888999999999998887654444444332 222334555555555533332 34555543
No 35
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=27.14 E-value=1.5e+02 Score=25.40 Aligned_cols=32 Identities=38% Similarity=0.366 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006989 581 ALEAELIATKKALYEALMRQEELLAYIDSQER 612 (622)
Q Consensus 581 ~le~~l~~tkkaL~~al~kQ~El~ayie~~k~ 612 (622)
.++-.|...+..|.++...|.+|.+.|++...
T Consensus 11 ~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~ 42 (92)
T PF14712_consen 11 LLEPDLDRLDQQLQELRQSQEELLQQIDRLNE 42 (92)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777777777777777777766553
No 36
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=27.10 E-value=2.4e+02 Score=29.22 Aligned_cols=72 Identities=24% Similarity=0.260 Sum_probs=50.6
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCCCCChhH-----HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 006989 539 FLSPVLKRLAELEQKVDMLQEKPTQMPFEK-----EELLDAAVYRVDALEAELIATK-------KALYEALMRQEELLAY 606 (622)
Q Consensus 539 ~~~~~~~rl~~lEekv~~L~~KP~~mP~EK-----Ee~Lnaa~~Rvd~le~~l~~tk-------kaL~~al~kQ~El~ay 606 (622)
.-..|++.|+||... ....++.+-|.| ..=+.+.+.|+..||..|..-. ..+++...+..+|.+-
T Consensus 181 ~r~~~~~~l~el~~r---~~~giP~LDPi~DmkI~d~~~~e~~~k~~~Le~rl~~~~~~~~~~~~~~~~~~~~k~~l~~~ 257 (268)
T PF13234_consen 181 ARKQVLKSLQELLKR---FPDGIPLLDPIKDMKIKDPEFVELVKKIEALEKRLSSHPLHKCPDFEEHYALYHEKAELQEE 257 (268)
T ss_dssp CHHHHHHHHHHHHHH---SSS--TCHHCHHHH----HHHHHHHHHHHHHHHHHHHSCHCCSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---CCCCCCccChHHhCCCCcHHHHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 356788888888777 344466666643 4557778888888888887654 5678888888888888
Q ss_pred HHHHHHh
Q 006989 607 IDSQERA 613 (622)
Q Consensus 607 ie~~k~~ 613 (622)
|+..|+.
T Consensus 258 i~~Lk~~ 264 (268)
T PF13234_consen 258 IKALKRQ 264 (268)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877743
No 37
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=26.41 E-value=3.1e+02 Score=31.60 Aligned_cols=54 Identities=30% Similarity=0.332 Sum_probs=38.4
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHH
Q 006989 539 FLSPVLKRLAELEQKVDMLQEKPTQMPFEKEELLDAAVYRVDALEAELIATKKA--------------LYEALMRQEEL 603 (622)
Q Consensus 539 ~~~~~~~rl~~lEekv~~L~~KP~~mP~EKEe~Lnaa~~Rvd~le~~l~~tkka--------------L~~al~kQ~El 603 (622)
+...+.+||...|+.-.. .++=|+.+-.+|..||.||..|++- |.+.|.+|.|=
T Consensus 442 Ec~aL~~rL~~aE~ek~~-----------l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~ee 509 (518)
T PF10212_consen 442 ECRALQKRLESAEKEKES-----------LEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREE 509 (518)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666654443 3455899999999999999999983 56666666653
No 38
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=25.62 E-value=3.4e+02 Score=32.50 Aligned_cols=39 Identities=31% Similarity=0.249 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006989 572 LDAAVYRVDALEAELIATKKALYEALMRQEELLAYIDSQ 610 (622)
Q Consensus 572 Lnaa~~Rvd~le~~l~~tkkaL~~al~kQ~El~ayie~~ 610 (622)
+++|+.++..|++||+.+||-|.++.---+-|-..+|++
T Consensus 211 rmaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~L 249 (916)
T KOG0249|consen 211 RMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDL 249 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 579999999999999999999988765445454444443
No 39
>COG4479 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.49 E-value=1.8e+02 Score=24.60 Aligned_cols=51 Identities=12% Similarity=0.454 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcC---CCHHHHHHHHHHHHHHH
Q 006989 84 HAVDAFRRVLISEELLPARHDHYHMLLRFLKARK---FDIAKATQMWADMIQWR 134 (622)
Q Consensus 84 ~~V~efRq~L~~~~~Lp~~~dD~~~LLRFLrArk---fDvekA~~~l~~~l~WR 134 (622)
....+|-+..-.+...|...+|++.+-+||.-.. |++.--=+.|++|+.|-
T Consensus 19 d~~~~lAn~af~D~sFPK~t~Df~~is~YLE~~a~f~~~m~~FDeiwe~Yle~~ 72 (74)
T COG4479 19 DDKTELANLAFDDHSFPKHTDDFHEISDYLETNADFLFNMSVFDEIWEEYLEHL 72 (74)
T ss_pred ChHHHHHHHHhhcccCCCCCccHHHHHHHHHhcCCcccchhhHHHHHHHHHHHh
Confidence 3345666666677788998899999999998653 56666667788888774
No 40
>PHA00687 hypothetical protein
Probab=24.61 E-value=1.7e+02 Score=22.60 Aligned_cols=30 Identities=37% Similarity=0.442 Sum_probs=21.7
Q ss_pred CCCChhHHHHHHHH----------HHHHHHHHHHHHHHHH
Q 006989 562 TQMPFEKEELLDAA----------VYRVDALEAELIATKK 591 (622)
Q Consensus 562 ~~mP~EKEe~Lnaa----------~~Rvd~le~~l~~tkk 591 (622)
...|+|--.+|+.| +.||+++|.--+..|+
T Consensus 9 ttlppeamrllqqaaqtpitradplarvkaiekatervkr 48 (56)
T PHA00687 9 TTLPPEAMRLLQQAAQTPITRADPLARVKAIEKATERVKR 48 (56)
T ss_pred ccCCHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHH
Confidence 35788888888866 5788888876555553
No 41
>PRK14136 recX recombination regulator RecX; Provisional
Probab=24.60 E-value=84 Score=33.76 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=19.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Q 006989 106 YHMLLRFLKARKFDIAKATQMWAD 129 (622)
Q Consensus 106 ~~~LLRFLrArkfDvekA~~~l~~ 129 (622)
..-+.|||..++|+.+...+.|..
T Consensus 278 k~K~iRfL~rRGFS~D~I~~vLk~ 301 (309)
T PRK14136 278 RAKQARFLAARGFSSATIVKLLKV 301 (309)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHh
Confidence 356889999999999987777754
No 42
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=24.37 E-value=1.2e+02 Score=30.24 Aligned_cols=31 Identities=52% Similarity=0.625 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Q 006989 566 FEKEELLDAAVYRVDALEAEL-------IATKKALYEA 596 (622)
Q Consensus 566 ~EKEe~Lnaa~~Rvd~le~~l-------~~tkkaL~~a 596 (622)
.||-.||.+|=.||+.|...| +.||++-+-+
T Consensus 140 ~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~kA 177 (188)
T PF05335_consen 140 AEKTQLLEAAKRRVEELQRQLQAARADYEKTKKAAYKA 177 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999998755 5566655433
No 43
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=24.00 E-value=5e+02 Score=27.45 Aligned_cols=38 Identities=18% Similarity=0.194 Sum_probs=32.8
Q ss_pred ccHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHH
Q 006989 538 DFLSPVLKRLAELEQKVDMLQEKPTQMPFEKEELLDAA 575 (622)
Q Consensus 538 ~~~~~~~~rl~~lEekv~~L~~KP~~mP~EKEe~Lnaa 575 (622)
..++-.|-|+..|+..++..+.+-+++.+.++++|-+.
T Consensus 52 ~ql~ll~~~~k~L~aE~~qwqk~~peii~~n~~VL~~l 89 (268)
T PF11802_consen 52 AQLSLLMMRVKCLTAELEQWQKRTPEIIPLNPEVLLTL 89 (268)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHH
Confidence 45677889999999999999999999999998887644
No 44
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=23.84 E-value=2.2e+02 Score=26.80 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006989 540 LSPVLKRLAELEQKVDMLQEKPTQMPFEKEELLDAAVYRVDALEAELIATKKALYEALMRQEELLA 605 (622)
Q Consensus 540 ~~~~~~rl~~lEekv~~L~~KP~~mP~EKEe~Lnaa~~Rvd~le~~l~~tkkaL~~al~kQ~El~a 605 (622)
-..+-+|+.+.|..+..|...-. -=..+=.-..+.+.+|+.|-..|.++...|++++.-=+.|-+
T Consensus 51 Q~~L~~riKevd~~~~~l~~~~~-erqk~~~k~ae~L~kv~els~~L~~~~~lL~~~v~~ie~LN~ 115 (131)
T PF10158_consen 51 QNALAKRIKEVDQEIAKLLQQMV-ERQKRFAKFAEQLEKVNELSQQLSRCQSLLNQTVPSIETLNE 115 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36778999999999988876533 113444556788999999999999999999998755444433
No 45
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=23.59 E-value=2.7e+02 Score=29.18 Aligned_cols=21 Identities=10% Similarity=-0.013 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 006989 596 ALMRQEELLAYIDSQERAKCR 616 (622)
Q Consensus 596 al~kQ~El~ayie~~k~~k~~ 616 (622)
+=.-|+-+.+++||+++||-+
T Consensus 250 s~d~~egi~aflek~~~~~~~ 270 (278)
T PLN03214 250 EPSIIKALGGVMERLSSGKEK 270 (278)
T ss_pred CHHHHHHHHHHHHHHhhcccc
Confidence 335588899999999988854
No 46
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=23.57 E-value=2.1e+02 Score=28.35 Aligned_cols=12 Identities=25% Similarity=0.409 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 006989 588 ATKKALYEALMR 599 (622)
Q Consensus 588 ~tkkaL~~al~k 599 (622)
+|.--|.+|.-|
T Consensus 142 ~~~~~~~~~~~~ 153 (189)
T TIGR02132 142 KTQDELKETIQK 153 (189)
T ss_pred cchhHHHHHHHH
Confidence 444445555443
No 47
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=23.45 E-value=1e+02 Score=30.21 Aligned_cols=32 Identities=38% Similarity=0.405 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006989 567 EKEELLDAAVYRVDALEAELIATKKALYEALMR 599 (622)
Q Consensus 567 EKEe~Lnaa~~Rvd~le~~l~~tkkaL~~al~k 599 (622)
|=|..||.|+.|-=-||.||+. |..|.+.+-|
T Consensus 4 D~EsklN~AIERnalLE~ELdE-KE~L~~~~QR 35 (166)
T PF04880_consen 4 DFESKLNQAIERNALLESELDE-KENLREEVQR 35 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHCH--
T ss_pred HHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHH
Confidence 4578899999999999999977 7778777655
No 48
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=23.01 E-value=3.5e+02 Score=30.39 Aligned_cols=55 Identities=27% Similarity=0.360 Sum_probs=36.9
Q ss_pred cHHHHHHHHHHHHHHHHHhcC--CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006989 539 FLSPVLKRLAELEQKVDMLQE--KPTQMPFEKEELLDAAVYRVDALEAELIATKKAL 593 (622)
Q Consensus 539 ~~~~~~~rl~~lEekv~~L~~--KP~~mP~EKEe~Lnaa~~Rvd~le~~l~~tkkaL 593 (622)
++..+-++|.+|+..+..|.. +...+|+++.++++........|.++|.+.+.-|
T Consensus 342 ~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 398 (451)
T PF03961_consen 342 ELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEEL 398 (451)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666654 4567888998888887777777777666555443
No 49
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=22.83 E-value=3.9e+02 Score=27.71 Aligned_cols=75 Identities=25% Similarity=0.318 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHhc---------CCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006989 540 LSPVLKRLAELEQKVDMLQ---------EKP-TQMPFEKEELLDAAVYRVDALEAELIATKKALYEALMRQEELLAYIDS 609 (622)
Q Consensus 540 ~~~~~~rl~~lEekv~~L~---------~KP-~~mP~EKEe~Lnaa~~Rvd~le~~l~~tkkaL~~al~kQ~El~ayie~ 609 (622)
...++.+...+|.+|..|. +|| -+|=..=+++|++.-.||..||+++..+|.--.+||-.-++|.+-|=.
T Consensus 144 H~~~~~~~~~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeIH~ 223 (239)
T PF05276_consen 144 HQRRARIYNEAEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEIHE 223 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666665 333 134445688999999999999999999999999999999999999966
Q ss_pred HHHhh
Q 006989 610 QERAK 614 (622)
Q Consensus 610 ~k~~k 614 (622)
+....
T Consensus 224 ~R~~~ 228 (239)
T PF05276_consen 224 QRRRR 228 (239)
T ss_pred HHhhC
Confidence 65443
No 50
>PRK14137 recX recombination regulator RecX; Provisional
Probab=22.67 E-value=1.7e+02 Score=29.37 Aligned_cols=27 Identities=19% Similarity=0.105 Sum_probs=22.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006989 107 HMLLRFLKARKFDIAKATQMWADMIQW 133 (622)
Q Consensus 107 ~~LLRFLrArkfDvekA~~~l~~~l~W 133 (622)
.-+.+||..++|+.+-+...|.+.+.-
T Consensus 156 ~K~~~~L~rRGFs~~~I~~al~~~~~~ 182 (195)
T PRK14137 156 ASAYAFLARRGFSGAVIWPAIREVAAL 182 (195)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 468899999999999998888876543
No 51
>PHA02562 46 endonuclease subunit; Provisional
Probab=22.61 E-value=2.1e+02 Score=32.57 Aligned_cols=75 Identities=15% Similarity=0.262 Sum_probs=56.5
Q ss_pred cccHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006989 537 ADFLSPVLKRLAELEQKVDMLQEKPTQMPFEKEELLDAAVYRVDALEAELIATKKALYEALMRQEELLAYIDSQER 612 (622)
Q Consensus 537 ~~~~~~~~~rl~~lEekv~~L~~KP~~mP~EKEe~Lnaa~~Rvd~le~~l~~tkkaL~~al~kQ~El~ayie~~k~ 612 (622)
.+.++.+...+.+|+++...|..+=.+.=...++ ++....|+..++.++...+..|++...+..+|-+=|++.+.
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~-~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~ 372 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDE-FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQA 372 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888888888888888888775544344444 77789999999999999999988877776666666666543
No 52
>PRK10884 SH3 domain-containing protein; Provisional
Probab=22.29 E-value=4.5e+02 Score=26.57 Aligned_cols=71 Identities=20% Similarity=0.248 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCC-------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006989 544 LKRLAELEQKVDMLQEKPTQM-------PFEKEELLDAAVYRVDALEAELIATKKALYEALMRQEELLAYIDSQERAK 614 (622)
Q Consensus 544 ~~rl~~lEekv~~L~~KP~~m-------P~EKEe~Lnaa~~Rvd~le~~l~~tkkaL~~al~kQ~El~ayie~~k~~k 614 (622)
-.||.+||..+..|..+-.++ =.|..+-+.++=.-|..|+.|...-++-|..+-.+-++|-+-++.+++..
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554443333 23334445555556666777777777777666666566666666666543
No 53
>PF15294 Leu_zip: Leucine zipper
Probab=22.28 E-value=2.2e+02 Score=30.17 Aligned_cols=61 Identities=30% Similarity=0.322 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006989 545 KRLAELEQKVDMLQEKPTQMPFEKEELLDAAVYRVDALEAELIATKKALYEALMRQEELLAYIDSQERAKCR 616 (622)
Q Consensus 545 ~rl~~lEekv~~L~~KP~~mP~EKEe~Lnaa~~Rvd~le~~l~~tkkaL~~al~kQ~El~ayie~~k~~k~~ 616 (622)
+-+.+||.+|..|. .|=|.-+++.-.--++||.+|..| +|+-|..|++ ++..++-=++||+
T Consensus 190 q~l~dLE~k~a~lK-------~e~ek~~~d~~~~~k~L~e~L~~~---KhelL~~Qeq-L~~aekeLekKfq 250 (278)
T PF15294_consen 190 QDLSDLENKMAALK-------SELEKALQDKESQQKALEETLQSC---KHELLRVQEQ-LSLAEKELEKKFQ 250 (278)
T ss_pred cchhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcchh-hhcchhhHHHHhC
Confidence 55778999998884 344566777777889999999998 5677888888 6666665566655
No 54
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=22.05 E-value=2.7e+02 Score=22.42 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006989 578 RVDALEAELIATKKALYEALMRQEELLAYIDSQERA 613 (622)
Q Consensus 578 Rvd~le~~l~~tkkaL~~al~kQ~El~ayie~~k~~ 613 (622)
||+.||.+|.+..-.+...=...++|-+-||+.++.
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~en 36 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEEN 36 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888887777655555567788888877754
No 55
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=20.68 E-value=3e+02 Score=26.09 Aligned_cols=59 Identities=31% Similarity=0.320 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006989 541 SPVLKRLAELEQKVDMLQEKPTQMPFEKEELLDAAVYRVDALEAELIATKKALYEALMRQEEL 603 (622)
Q Consensus 541 ~~~~~rl~~lEekv~~L~~KP~~mP~EKEe~Lnaa~~Rvd~le~~l~~tkkaL~~al~kQ~El 603 (622)
-....|..+||+++..|...-. +||+=++.=-.|+..||.||.++...|.++-.+.++-
T Consensus 10 d~a~~r~e~~e~~~K~le~~~~----~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~ 68 (143)
T PF12718_consen 10 DNAQDRAEELEAKVKQLEQENE----QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEES 68 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3446788888888888877643 7788888888888888888888888887776665554
No 56
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=20.08 E-value=3e+02 Score=22.56 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 006989 83 LHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWAD 129 (622)
Q Consensus 83 ~~~V~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~ 129 (622)
...|+.+++.. .+|.| +-+...|+-|+.|+..|.+.|..
T Consensus 6 rk~VQ~iKEiv-------~~hse-~eIya~L~ecnMDpnea~qrLL~ 44 (60)
T PF06972_consen 6 RKTVQSIKEIV-------GCHSE-EEIYAMLKECNMDPNEAVQRLLS 44 (60)
T ss_pred HHHHHHHHHHh-------cCCCH-HHHHHHHHHhCCCHHHHHHHHHh
Confidence 45667777665 33666 45889999999999999999854
No 57
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=20.02 E-value=3.3e+02 Score=22.51 Aligned_cols=50 Identities=20% Similarity=0.243 Sum_probs=32.4
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhhhccc--cccceEEEEecChhHHHHH
Q 006989 223 SSTTILDVQGVGFKSLTKSARELIMQVQKIDSDNYP--ETLCRMFIINAGQGFKLLW 277 (622)
Q Consensus 223 ~~tiIiDl~Gvsl~~~~~~~~~~ik~i~kilq~~YP--erL~~i~IINaP~~f~~lw 277 (622)
+-.+++|+.|+.. +. .+++-.++.-+...|| +.-.++.++|+......+.
T Consensus 17 ~~~V~lDF~gv~~--~~---ssFl~eafg~l~~~~~~~~~~~~l~~~~~~~~~~~~I 68 (74)
T PF14213_consen 17 GEKVVLDFEGVES--IT---SSFLNEAFGQLVREFGEEEIKKRLKFKNANESIKEMI 68 (74)
T ss_pred CCeEEEECCCccc--cc---HHHHHHHHHHHHHHcCHHHHhheeEEecCCHHHHHHH
Confidence 3348899999943 33 4555555665566666 4566788888877664443
Done!