Query 006989
Match_columns 622
No_of_seqs 340 out of 1533
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 14:16:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006989.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006989hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q8g_A CRAL-TRIO domain-contai 100.0 1.5E-55 5.1E-60 464.3 18.2 263 78-343 35-304 (320)
2 1aua_A Phosphatidylinositol tr 100.0 8E-55 2.7E-59 452.3 21.2 269 75-349 24-293 (296)
3 1olm_A SEC14-like protein 2; l 100.0 9.2E-46 3.1E-50 400.3 22.9 242 76-324 7-249 (403)
4 3hx3_A Retinaldehyde-binding p 100.0 7E-46 2.4E-50 389.8 18.4 236 71-322 45-294 (316)
5 1r5l_A Alpha-TTP, protein (alp 100.0 7.8E-45 2.7E-49 369.5 16.6 228 79-322 5-235 (262)
6 3pg7_A Neurofibromin; SEC lipi 99.1 1.1E-10 3.7E-15 119.1 6.9 137 154-312 7-144 (256)
7 3peg_A Neurofibromin; SEC14 do 98.8 1.8E-09 6.3E-14 111.8 3.7 132 159-312 31-163 (290)
8 2hy6_A General control protein 69.2 1.3 4.6E-05 30.5 0.7 16 545-560 1-16 (34)
9 2bni_A General control protein 68.7 1.4 4.7E-05 30.5 0.7 16 545-560 1-16 (34)
10 3c3g_A Alpha/beta peptide with 68.5 6.2 0.00021 27.1 3.8 14 546-559 1-14 (33)
11 2wq1_A General control protein 67.9 7.8 0.00027 26.6 4.2 14 546-559 1-14 (33)
12 3c3f_A Alpha/beta peptide with 67.5 8 0.00027 26.7 4.2 15 545-559 1-15 (34)
13 2oxj_A Hybrid alpha/beta pepti 66.8 6.9 0.00024 27.0 3.8 30 545-582 1-30 (34)
14 1uo4_A General control protein 66.7 6.1 0.00021 27.3 3.5 15 545-559 1-15 (34)
15 3m48_A General control protein 63.3 7.1 0.00024 26.8 3.3 13 546-558 1-13 (33)
16 1kd8_A GABH AIV, GCN4 acid bas 59.8 12 0.0004 26.2 3.9 14 545-558 1-14 (36)
17 1nkp_A C-MYC, MYC proto-oncoge 59.1 44 0.0015 27.9 8.4 66 545-610 16-85 (88)
18 1wgl_A TOLL-interacting protei 55.8 12 0.00042 29.1 4.0 40 83-130 10-49 (59)
19 1kd8_B GABH BLL, GCN4 acid bas 53.9 24 0.00082 24.7 4.7 16 545-560 1-16 (36)
20 1nkp_B MAX protein, MYC proto- 53.4 64 0.0022 26.3 8.4 63 545-607 12-77 (83)
21 1m62_A BAG-family molecular ch 53.1 31 0.0011 29.0 6.4 65 538-609 11-84 (87)
22 2dhy_A CUE domain-containing p 52.6 17 0.00058 29.1 4.5 42 81-130 17-58 (67)
23 1m7k_A Silencer of death domai 52.6 19 0.00067 31.0 5.1 68 535-609 21-97 (99)
24 2r2v_A GCN4 leucine zipper; co 48.8 26 0.00088 24.2 4.2 16 545-560 1-16 (34)
25 3a8y_C BAG family molecular ch 48.4 33 0.0011 31.4 6.2 67 538-611 34-109 (142)
26 2dam_A ETEA protein; KIAA0887, 45.3 50 0.0017 26.1 6.2 42 79-128 15-56 (67)
27 3htk_A Structural maintenance 41.2 1.1E+02 0.0039 23.0 7.8 46 568-613 10-55 (60)
28 1ic2_A Tropomyosin alpha chain 38.5 75 0.0026 25.9 6.5 58 541-602 16-73 (81)
29 1ugo_A BCL2-associated athanog 38.2 47 0.0016 28.6 5.3 66 538-610 18-92 (99)
30 1yke_B RNA polymerase II holoe 38.0 1.7E+02 0.006 26.8 9.6 68 536-611 51-126 (151)
31 2dal_A Protein KIAA0794; FAS a 36.5 70 0.0024 24.8 5.7 40 79-127 12-51 (62)
32 1ykh_B RNA polymerase II holoe 36.3 2.1E+02 0.0073 25.4 9.7 68 536-611 51-126 (132)
33 3rrk_A V-type ATPase 116 kDa s 33.9 1.5E+02 0.005 30.4 9.5 65 548-612 199-269 (357)
34 3e3v_A Regulatory protein RECX 33.8 32 0.0011 32.2 4.0 76 51-130 86-163 (177)
35 1v92_A NSFL1 cofactor P47; 3-h 33.6 67 0.0023 22.8 4.9 37 82-127 5-41 (46)
36 3etw_A Adhesin A; antiparallel 33.1 1E+02 0.0036 27.3 6.8 74 541-614 5-108 (119)
37 1uk5_A BAG-family molecular ch 33.0 68 0.0023 28.1 5.6 67 538-611 30-105 (111)
38 2p2u_A HOST-nuclease inhibitor 32.8 2.6E+02 0.0088 26.0 10.1 69 532-613 10-78 (171)
39 1ufz_A Hypothetical protein BA 29.5 77 0.0026 26.4 5.0 41 83-130 35-75 (83)
40 1pl5_A Regulatory protein SIR4 29.3 91 0.0031 27.0 5.6 40 577-616 95-134 (142)
41 2q9q_C DNA replication complex 28.5 1.2E+02 0.004 28.8 7.1 32 559-590 16-47 (196)
42 3e21_A HFAF1, FAS-associated f 27.6 1.3E+02 0.0046 21.9 5.5 37 82-126 5-41 (45)
43 1nyh_A Regulatory protein SIR4 27.2 1E+02 0.0035 27.3 5.7 40 577-616 119-158 (166)
44 2z5i_I TM, tropomyosin alpha-1 26.7 44 0.0015 24.0 2.7 20 573-592 20-39 (40)
45 2oqq_A Transcription factor HY 26.5 34 0.0012 24.8 2.0 12 546-557 18-29 (42)
46 2ke4_A CDC42-interacting prote 25.5 90 0.0031 26.7 5.0 46 550-596 41-88 (98)
47 3dfg_A Xcrecx, regulatory prot 24.6 44 0.0015 30.8 3.1 73 51-128 84-157 (162)
48 3u1c_A Tropomyosin alpha-1 cha 24.5 1.3E+02 0.0046 25.5 5.9 56 543-602 21-76 (101)
49 2dah_A Ubiquilin-3; UBA domain 23.5 1.6E+02 0.0054 22.2 5.5 38 84-130 11-48 (54)
50 2l5g_B Putative uncharacterize 23.5 1.3E+02 0.0046 21.7 4.6 35 567-605 3-37 (42)
51 2di0_A Activating signal coint 22.9 1.7E+02 0.0058 23.6 5.7 43 79-129 10-52 (71)
52 1hlo_A Protein (transcription 21.7 1.1E+02 0.0039 24.6 4.7 47 545-591 22-71 (80)
53 2ql2_B Neurod1, neurogenic dif 21.3 1.1E+02 0.0038 23.6 4.3 43 545-587 12-58 (60)
54 4aya_A DNA-binding protein inh 21.2 1.3E+02 0.0043 25.8 5.0 45 544-588 34-82 (97)
55 1z96_A DNA-damage, UBA-domain 20.8 1.2E+02 0.0042 20.6 4.2 21 107-127 19-39 (40)
56 3hf0_A GCN4-PLI SIDE chain seq 20.7 1.9E+02 0.0064 19.3 4.6 28 568-595 6-33 (34)
57 1otr_A Protein CUE2; protein-p 20.1 1.4E+02 0.0048 22.2 4.5 24 107-130 21-44 (49)
58 1j3a_A 50S ribosomal protein L 20.0 49 0.0017 30.2 2.3 46 226-303 2-47 (142)
59 1g8x_A Myosin II heavy chain f 20.0 3.6E+02 0.012 32.2 10.3 62 542-606 818-887 (1010)
No 1
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=1.5e-55 Score=464.35 Aligned_cols=263 Identities=37% Similarity=0.675 Sum_probs=242.9
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccccchh------HH
Q 006989 78 RNVEELHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWADMIQWRKDFGTDTILEDFEFS------EV 151 (622)
Q Consensus 78 ~d~~E~~~V~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRke~~~d~i~~d~~~~------el 151 (622)
.+++|+++|++||+||.++++ +.+.|| .+||||||||+||+++|.+||+++++||+++++|.++.++.++ +.
T Consensus 35 lt~~q~~~l~~lR~~l~~~~~-~~~~dD-~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~~~~~e~ 112 (320)
T 3q8g_A 35 LTKEQEEALLQFRSILLEKNY-KERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKER 112 (320)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC-CSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCC-CCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccccchhHH
Confidence 378889999999999999884 566777 6999999999999999999999999999999999998776554 44
Q ss_pred HHHHhhcccccccCCCCCCcEEEEecCccCCccccccCCHHHHHHHHHHHHHHHHHhhcchhhhhhcCCCCcEEEEEeCC
Q 006989 152 NEVLQYYPQGYHGMDKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTILDVQ 231 (622)
Q Consensus 152 ~~vlk~~p~~~~G~DkeGRPVli~rlg~~dp~kl~~~~t~~~~lk~~v~~~E~~l~~~~~acs~~~~~~i~~~tiIiDl~ 231 (622)
..+.++++++++|+|++||||+|+++|++|++++++.++.+++++++++.+|.+++.++++|+...+..++++++|+|++
T Consensus 113 ~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~ 192 (320)
T 3q8g_A 113 IKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLK 192 (320)
T ss_dssp HHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECT
T ss_pred HHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECC
Confidence 55778899999999999999999999999999888888999999999999999998888888877788899999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHhhhccccccceEEEEecChhHHHHHHHHhhccChhhhcceEEcCccchHHHHhhcCCCC
Q 006989 232 GVGFKSLTKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVRRFLDPKTTSKIHVLGNKYQSKLLEIIDASE 311 (622)
Q Consensus 232 Gvsl~~~~~~~~~~ik~i~kilq~~YPerL~~i~IINaP~~f~~lw~lVKpFLdpkT~~KI~~lg~~~~~~L~e~Id~d~ 311 (622)
|+|+++++. .+++++.+++++|++||+||+++||||+|++|+++|++|||||+++|++||+|+++++.++|.++||+++
T Consensus 193 g~sl~~~~~-~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~ 271 (320)
T 3q8g_A 193 GISLSNAYH-VLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIEN 271 (320)
T ss_dssp TCCHHHHHH-THHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHHHHHHSCGGG
T ss_pred CCCHHHHHH-HHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHHHHhhCChhh
Confidence 999999864 3788999999999999999999999999999999999999999999999999999888899999999999
Q ss_pred CccccCCCCCCCC-CCCCcCCCCCCCCChhHHH
Q 006989 312 LPEFLGGSCNCAD-QGGCMRSDKGPWKDPNILQ 343 (622)
Q Consensus 312 LP~eyGGt~~~~~-~gGcl~~~~gpW~~p~~lk 343 (622)
||++|||+++|++ +|||+.+|.|||++|++++
T Consensus 272 LP~~yGG~~~~~~~~ggc~~~~~gpw~~~~~~~ 304 (320)
T 3q8g_A 272 LPVKYGGTSVLHNPNDKFYYSDIGPWRDPRYIG 304 (320)
T ss_dssp SBGGGTSCBCCSSTTSCGGGBCBSGGGCTTTCC
T ss_pred CChhhCCCCCCCCCCCCeecCCCCCCCChhhcC
Confidence 9999999999987 6999999999999999975
No 2
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=8e-55 Score=452.31 Aligned_cols=269 Identities=39% Similarity=0.722 Sum_probs=244.8
Q ss_pred ccCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccccchhHHHHH
Q 006989 75 EDVRNVEELHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWADMIQWRKDFGTDTILEDFEFSEVNEV 154 (622)
Q Consensus 75 edl~d~~E~~~V~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRke~~~d~i~~d~~~~el~~v 154 (622)
.++ +++|+++|++||+||.++++ +...|| .+|+||||||+||+++|.+||+++++||++++++.++.++.+.+...+
T Consensus 24 ~~l-~~~q~~~l~~lr~~l~~~~~-~~~~dd-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~~~~ 100 (296)
T 1aua_A 24 GNL-DSAQEKALAELRKLLEDAGF-IERLDD-STLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLI 100 (296)
T ss_dssp TTC-CTTHHHHHHHHHHHHHHTTC-CSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTTHHHH
T ss_pred CCC-CHHHHHHHHHHHHHHHhcCC-CCCCch-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCcHHHH
Confidence 344 66778999999999998884 666777 699999999999999999999999999999999988877665444556
Q ss_pred HhhcccccccCCCCCCcEEEEecCccCCccccccCCHHHHHHHHHHHHHHHHHhhcchhhhhhcCCCCcEEEEEeCCCCC
Q 006989 155 LQYYPQGYHGMDKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTILDVQGVG 234 (622)
Q Consensus 155 lk~~p~~~~G~DkeGRPVli~rlg~~dp~kl~~~~t~~~~lk~~v~~~E~~l~~~~~acs~~~~~~i~~~tiIiDl~Gvs 234 (622)
.++++++++|+|++||||+|+++|++|++++++..+.+++++++++.+|.+++.++++|+...+.+++++++|+|++|+|
T Consensus 101 ~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s 180 (296)
T 1aua_A 101 AKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGIS 180 (296)
T ss_dssp GGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCC
T ss_pred HHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCC
Confidence 67889999999999999999999999999988888999999999999999998888888877788899999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhhhccccccceEEEEecChhHHHHHHHHhhccChhhhcceEEcCccchHHHHhhcCCCCCcc
Q 006989 235 FKSLTKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVRRFLDPKTTSKIHVLGNKYQSKLLEIIDASELPE 314 (622)
Q Consensus 235 l~~~~~~~~~~ik~i~kilq~~YPerL~~i~IINaP~~f~~lw~lVKpFLdpkT~~KI~~lg~~~~~~L~e~Id~d~LP~ 314 (622)
++|++.. +++++.+++++|+|||+||+++||||+|++|+++|++|||||+++|++||+|+++++.+.|.++||+++||+
T Consensus 181 ~~~~~~~-~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~ 259 (296)
T 1aua_A 181 ISSAYSV-MSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPV 259 (296)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSSBG
T ss_pred HHHHHHH-HHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHhhCcH
Confidence 9988753 789999999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred ccCCCCCCCC-CCCCcCCCCCCCCChhHHHHhhhcc
Q 006989 315 FLGGSCNCAD-QGGCMRSDKGPWKDPNILQIVLSGE 349 (622)
Q Consensus 315 eyGGt~~~~~-~gGcl~~~~gpW~~p~~lk~v~~~~ 349 (622)
+|||+++|.+ +|||+.++.|||++|++++ .+|+
T Consensus 260 ~yGG~~~~~~~~~g~~~~~~~~w~~~~~~~--~~~~ 293 (296)
T 1aua_A 260 KFGGKSEVDESKGGLYLSDIGPWRDPKYIG--PEGE 293 (296)
T ss_dssp GGTSCBCCCGGGCCSTTCCCSGGGCGGGCC--TTCC
T ss_pred HhCCCCCCCCCCCCceeCCCCCCCChhhcc--ccCC
Confidence 9999999987 5899999999999999974 4444
No 3
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=9.2e-46 Score=400.32 Aligned_cols=242 Identities=31% Similarity=0.477 Sum_probs=216.4
Q ss_pred cCCCHHHHHHHHHHHHHHHhCC-CCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccccchhHHHHH
Q 006989 76 DVRNVEELHAVDAFRRVLISEE-LLPARHDHYHMLLRFLKARKFDIAKATQMWADMIQWRKDFGTDTILEDFEFSEVNEV 154 (622)
Q Consensus 76 dl~d~~E~~~V~efRq~L~~~~-~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRke~~~d~i~~d~~~~el~~v 154 (622)
++ +++|+++|++||++|...+ ++| ..|| .+||||||||+||+++|.+||+++++||++++++.++.. ..++ .+
T Consensus 7 ~l-~~~q~~~l~~lr~~l~~~~~~l~-~~dD-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~-~~~~--~~ 80 (403)
T 1olm_A 7 DL-SPRQKEALAKFRENVQDVLPALP-NPDD-YFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISW-QPPE--VI 80 (403)
T ss_dssp BC-CHHHHHHHHHHHHHHGGGGGGSS-CCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGS-CCCH--HH
T ss_pred CC-CHHHHHHHHHHHHHHHhhccCCC-CCCh-hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCccccc-CCHH--HH
Confidence 44 7888999999999998773 565 4666 699999999999999999999999999999999888763 3332 25
Q ss_pred HhhcccccccCCCCCCcEEEEecCccCCccccccCCHHHHHHHHHHHHHHHHHhhcchhhhhhcCCCCcEEEEEeCCCCC
Q 006989 155 LQYYPQGYHGMDKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTILDVQGVG 234 (622)
Q Consensus 155 lk~~p~~~~G~DkeGRPVli~rlg~~dp~kl~~~~t~~~~lk~~v~~~E~~l~~~~~acs~~~~~~i~~~tiIiDl~Gvs 234 (622)
.++++.+++|+|++||||+|+++|++|++++++..+.+++++++++.+|.+++.+. .|+...+.+++++++|+|++|++
T Consensus 81 ~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~-~~s~~~g~~v~~~~~I~D~~g~s 159 (403)
T 1olm_A 81 QQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECA-HQTTKLGRKVETITIIYDCEGLG 159 (403)
T ss_dssp HHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHH-HHHHHHTSCCCCEEEEEECTTCC
T ss_pred HHhCCceeeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHH-hhHHhhCCcccceEEEEECCCCC
Confidence 66788889999999999999999999999888778999999999999999988643 34444456799999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhhhccccccceEEEEecChhHHHHHHHHhhccChhhhcceEEcCccchHHHHhhcCCCCCcc
Q 006989 235 FKSLTKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVRRFLDPKTTSKIHVLGNKYQSKLLEIIDASELPE 314 (622)
Q Consensus 235 l~~~~~~~~~~ik~i~kilq~~YPerL~~i~IINaP~~f~~lw~lVKpFLdpkT~~KI~~lg~~~~~~L~e~Id~d~LP~ 314 (622)
++|++++.+++++.+++++|+|||+||+++||||+|++|+++|+++||||+++|++||+|+++++.+.|.++||+++||+
T Consensus 160 l~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~~~LP~ 239 (403)
T 1olm_A 160 LKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPV 239 (403)
T ss_dssp GGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGSBG
T ss_pred HHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcChhhCch
Confidence 99999888999999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred ccCCCCCCCC
Q 006989 315 FLGGSCNCAD 324 (622)
Q Consensus 315 eyGGt~~~~~ 324 (622)
+|||++++++
T Consensus 240 ~yGG~~~~~~ 249 (403)
T 1olm_A 240 EYGGTMTDPD 249 (403)
T ss_dssp GGTSSBCCTT
T ss_pred hhCCCcCCCC
Confidence 9999998854
No 4
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=7e-46 Score=389.84 Aligned_cols=236 Identities=20% Similarity=0.345 Sum_probs=200.2
Q ss_pred ccccccCCCHHH--HHHHHHHHHHHHhCCCCC-----------CCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc
Q 006989 71 PVSIEDVRNVEE--LHAVDAFRRVLISEELLP-----------ARHDHYHMLLRFLKARKFDIAKATQMWADMIQWRKDF 137 (622)
Q Consensus 71 ~~siedl~d~~E--~~~V~efRq~L~~~~~Lp-----------~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRke~ 137 (622)
.++.++|++.++ +++|++||+||.++|+++ .+.|| .+|+||||||+||+++|.+||.+|++||+++
T Consensus 45 ~~a~~eL~E~~~~~~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD-~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~ 123 (316)
T 3hx3_A 45 QKAKDELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDS-GFFLRFIRARKFNVGRAYELLRGYVNFRLQY 123 (316)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHhCCCccccccccccccCCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhC
Confidence 345678887665 789999999999999874 45666 6999999999999999999999999999999
Q ss_pred CCCccccccchhHHHHHHhh-cccccccCCCCCCcEEEEecCccCCccccccCCHHHHHHHHHHHHHHHHHhhcchhhhh
Q 006989 138 GTDTILEDFEFSEVNEVLQY-YPQGYHGMDKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIA 216 (622)
Q Consensus 138 ~~d~i~~d~~~~el~~vlk~-~p~~~~G~DkeGRPVli~rlg~~dp~kl~~~~t~~~~lk~~v~~~E~~l~~~~~acs~~ 216 (622)
+. ++.++.++++..+++. ++.+++|+|++||||+|+++|++|++++ +.+++++++++.+|.++..
T Consensus 124 ~~--~~~~~~~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~----~~~~~~r~~~~~lE~~l~~-------- 189 (316)
T 3hx3_A 124 PE--LFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEI----TFDEILQAYCFILEKLLEN-------- 189 (316)
T ss_dssp GG--GTTTCCHHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTS----CHHHHHHHHHHHHHHHTTS--------
T ss_pred ch--hhcCCCHHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCC----CHHHHHHHHHHHHHHHHhc--------
Confidence 84 4556666777666655 4577899999999999999999999874 8999999999999988753
Q ss_pred hcCCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhhhccccccceEEEEecChhHHHHHHHHhhccChhhhcceEEcC
Q 006989 217 AKRHIDSSTTILDVQGVGFKSLTKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVRRFLDPKTTSKIHVLG 296 (622)
Q Consensus 217 ~~~~i~~~tiIiDl~Gvsl~~~~~~~~~~ik~i~kilq~~YPerL~~i~IINaP~~f~~lw~lVKpFLdpkT~~KI~~lg 296 (622)
...+++|+++|+|++|+|++|+.......++.+++++|++||+||+++||||+|++|.++|+++||||+++|++||+|++
T Consensus 190 ~~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~ 269 (316)
T 3hx3_A 190 EETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHG 269 (316)
T ss_dssp HHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEE
T ss_pred ccCCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeC
Confidence 24568899999999999999875545778999999999999999999999999999999999999999999999999998
Q ss_pred ccchHHHHhhcCCCCCccccCCCCCC
Q 006989 297 NKYQSKLLEIIDASELPEFLGGSCNC 322 (622)
Q Consensus 297 ~~~~~~L~e~Id~d~LP~eyGGt~~~ 322 (622)
+++ ++|+++||+++||++|||++++
T Consensus 270 ~~~-~~L~~~I~~~~LP~eyGG~~~~ 294 (316)
T 3hx3_A 270 DDL-SGFYQEIDENILPSDFGGTLPK 294 (316)
T ss_dssp TCC-HHHHHHSCGGGSBGGGTSSBCC
T ss_pred CCH-HHHHhhCCHhhCcHhhCCCCCC
Confidence 765 7899999999999999999876
No 5
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=7.8e-45 Score=369.46 Aligned_cols=228 Identities=23% Similarity=0.346 Sum_probs=195.6
Q ss_pred CHHHHHHHHHHHHHHHhCC--CCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccccchhHHHHHHh
Q 006989 79 NVEELHAVDAFRRVLISEE--LLPARHDHYHMLLRFLKARKFDIAKATQMWADMIQWRKDFGTDTILEDFEFSEVNEVLQ 156 (622)
Q Consensus 79 d~~E~~~V~efRq~L~~~~--~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRke~~~d~i~~d~~~~el~~vlk 156 (622)
++.|+++|++||+++..++ ++|...|| .+|+||||||+||+++|.+||+++++||++++. +..++.++++....+
T Consensus 5 s~~~~~~l~~lr~~l~~~~~~~~~~~~dd-~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~--i~~~~~~~~~~~~~~ 81 (262)
T 1r5l_A 5 SPLLQPGLAALRRRAREAGVPLAPLPLTD-SFLLRFLRARDFDLDLAWRLLKNYYKWRAECPE--ISADLHPRSIIGLLK 81 (262)
T ss_dssp ----CTTHHHHHHHHHHHTCCCSSSCCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHH--HHSCCCGGGTHHHHH
T ss_pred cHHHHHHHHHHHHHHHhCCcccCCCCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChH--hhhcCChHHHHHHHH
Confidence 5667899999999998765 56777777 699999999999999999999999999999962 434445555544555
Q ss_pred hc-ccccccCCCCCCcEEEEecCccCCccccccCCHHHHHHHHHHHHHHHHHhhcchhhhhhcCCCCcEEEEEeCCCCCC
Q 006989 157 YY-PQGYHGMDKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTILDVQGVGF 235 (622)
Q Consensus 157 ~~-p~~~~G~DkeGRPVli~rlg~~dp~kl~~~~t~~~~lk~~v~~~E~~l~~~~~acs~~~~~~i~~~tiIiDl~Gvsl 235 (622)
.+ ..+++|+|++||||+|+++|++|++.+ +.+++++++++.+|.++.. ...++.|+++|+|++|+|+
T Consensus 82 ~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~----~~~~~~r~~~~~~E~~~~~--------~~~~~~g~~~I~D~~g~s~ 149 (262)
T 1r5l_A 82 AGYHGVLRSRDPTGSKVLIYRIAHWDPKVF----TAYDVFRVSLITSELIVQE--------VETQRNGIKAIFDLEGWQF 149 (262)
T ss_dssp TTCEEECSSCCTTCCEEEEEEGGGCCTTTS----CHHHHHHHHHHHHHHHTTS--------HHHHHHCEEEEEECTTCCH
T ss_pred cCCccCCCCcCCCCCEEEEEeccccCcccC----CHHHHHHHHHHHHHHHHhC--------hhhcccceEEEEECCCCCH
Confidence 44 567899999999999999999999874 7889999999999987643 1234679999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhhccccccceEEEEecChhHHHHHHHHhhccChhhhcceEEcCccchHHHHhhcCCCCCccc
Q 006989 236 KSLTKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVRRFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEF 315 (622)
Q Consensus 236 ~~~~~~~~~~ik~i~kilq~~YPerL~~i~IINaP~~f~~lw~lVKpFLdpkT~~KI~~lg~~~~~~L~e~Id~d~LP~e 315 (622)
+|+.....++++.+++++|+|||+||+++||||+|++|+++|++|||||+++|++||+|+++++.+.|.++|| ++||++
T Consensus 150 ~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~~ 228 (262)
T 1r5l_A 150 SHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPLE 228 (262)
T ss_dssp HHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCGG
T ss_pred HHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCcHh
Confidence 9886656789999999999999999999999999999999999999999999999999999888899999999 999999
Q ss_pred cCCCCCC
Q 006989 316 LGGSCNC 322 (622)
Q Consensus 316 yGGt~~~ 322 (622)
|||++..
T Consensus 229 yGG~~~~ 235 (262)
T 1r5l_A 229 YGGEEFS 235 (262)
T ss_dssp GTCSSCC
T ss_pred hCCCCCC
Confidence 9999643
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.07 E-value=1.1e-10 Score=119.06 Aligned_cols=137 Identities=11% Similarity=0.130 Sum_probs=110.7
Q ss_pred HHhhcccccccCCCCCCcEEEEecCccCCccccccCCHHHHHHHHHHHHHHHHHhhcchhhhhhcCCCCcEEEEEeCCCC
Q 006989 154 VLQYYPQGYHGMDKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTILDVQGV 233 (622)
Q Consensus 154 vlk~~p~~~~G~DkeGRPVli~rlg~~dp~kl~~~~t~~~~lk~~v~~~E~~l~~~~~acs~~~~~~i~~~tiIiDl~Gv 233 (622)
+.+....+..|.|++||||+++.+++++...+ +++.++.|.+..++.+. -...++|+|+.|+
T Consensus 7 i~~~~ify~~G~d~dGrpViv~~~~~l~~~~~----D~e~Ll~~vl~tl~~~~--------------~~~y~lV~d~T~~ 68 (256)
T 3pg7_A 7 LKTLSIFYQAGTSKAGNPIFYYVARRFKTGQI----NGDLLIYHVLLTLKPYY--------------AKPYEIVVDLTHT 68 (256)
T ss_dssp HHHHTSEEEEEECTTSCEEEEEEGGGCCBTTB----CHHHHHHHHHHHHTTTT--------------TSCEEEEEECTTC
T ss_pred HHHcCCEEEcCcCCCCCEEEEEEeecCCCCCC----CHHHHHHHHHHHHHHhc--------------CCCeEEEEECCCC
Confidence 33444455568999999999999999988653 67877777776666433 2478999999999
Q ss_pred CCCCCChHHHHHHHHHHHHhhhccccccceEEEEecChhHHHHHHH-HhhccChhhhcceEEcCccchHHHHhhcCCCCC
Q 006989 234 GFKSLTKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNS-VRRFLDPKTTSKIHVLGNKYQSKLLEIIDASEL 312 (622)
Q Consensus 234 sl~~~~~~~~~~ik~i~kilq~~YPerL~~i~IINaP~~f~~lw~l-VKpFLdpkT~~KI~~lg~~~~~~L~e~Id~d~L 312 (622)
+..+-+ ..++++.+..++...|...|+++||+|++++|+..|+. .++|.+.+...|++++++ .++|.++|+.++|
T Consensus 69 ~~~n~p--~~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~s--l~eL~~~i~~~~L 144 (256)
T 3pg7_A 69 GPSNRF--KTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQQ 144 (256)
T ss_dssp CGGGCC--CHHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESS--TTGGGGTSCGGGC
T ss_pred CcccCC--cHHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECC--HHHHHhhcCHHHc
Confidence 987654 37789999999999999999999999999999977665 566666688899999965 5889999987776
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.79 E-value=1.8e-09 Score=111.78 Aligned_cols=132 Identities=11% Similarity=0.138 Sum_probs=98.0
Q ss_pred ccccccCCCCCCcEEEEecCccCCccccccCCHHHHHHHHHHHHHHHHHhhcchhhhhhcCCCCcEEEEEeCCCCCCCCC
Q 006989 159 PQGYHGMDKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTILDVQGVGFKSL 238 (622)
Q Consensus 159 p~~~~G~DkeGRPVli~rlg~~dp~kl~~~~t~~~~lk~~v~~~E~~l~~~~~acs~~~~~~i~~~tiIiDl~Gvsl~~~ 238 (622)
..+..|.|++||||+++.+++++...+ +.+.++-|.+..++... -...++|+|+.|++..+-
T Consensus 31 ~f~~~g~d~dG~PViv~~~~~~~~~~~----D~e~Lly~il~tl~~~~--------------~~~y~lV~D~T~~~~~n~ 92 (290)
T 3peg_A 31 IFYQAGTSKAGNPIFYYVARRFKTGQI----NGDLLIYHVLLTLKPYY--------------AKPYEIVVDLTHTGPSNR 92 (290)
T ss_dssp TEEEEEECTTSCEEEEEEGGGCCBTTB----CHHHHHHHHHHHHTTTT--------------TSCEEEEEECTTCCGGGC
T ss_pred eEEEeccCCCCCEEEEEEeecCCccCC----CHHHHHHHHHHHHHHhc--------------CCCeEEEEEcCCCCccCC
Confidence 334458999999999999999987653 67777766666555433 247899999999998765
Q ss_pred ChHHHHHHHHHHHHhhhccccccceEEEEecChhHHHHH-HHHhhccChhhhcceEEcCccchHHHHhhcCCCCC
Q 006989 239 TKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLW-NSVRRFLDPKTTSKIHVLGNKYQSKLLEIIDASEL 312 (622)
Q Consensus 239 ~~~~~~~ik~i~kilq~~YPerL~~i~IINaP~~f~~lw-~lVKpFLdpkT~~KI~~lg~~~~~~L~e~Id~d~L 312 (622)
+ ..++++.+..++...|+..|+++||+|++++|+..+ ...++|...+...|+.++++. ..|.++++.+++
T Consensus 93 p--~~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~~--~~L~~~i~~~~~ 163 (290)
T 3peg_A 93 F--KTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCP--GKLAEHIEHEQQ 163 (290)
T ss_dssp C--CHHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESSS--CC----------
T ss_pred C--hHHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCCH--HHHHhhCCHHHh
Confidence 4 278899999999999999999999999999998754 567888888889999998653 458888887654
No 8
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=69.18 E-value=1.3 Score=30.52 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhcCC
Q 006989 545 KRLAELEQKVDMLQEK 560 (622)
Q Consensus 545 ~rl~~lEekv~~L~~K 560 (622)
+||..||+||.+|-.+
T Consensus 1 ~RMnQLEdkVEeLl~~ 16 (34)
T 2hy6_A 1 MKVKQLADAVEELASA 16 (34)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHh
Confidence 4788899999887543
No 9
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=68.72 E-value=1.4 Score=30.49 Aligned_cols=16 Identities=25% Similarity=0.536 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhcCC
Q 006989 545 KRLAELEQKVDMLQEK 560 (622)
Q Consensus 545 ~rl~~lEekv~~L~~K 560 (622)
+||..||+||.+|-.+
T Consensus 1 eRMnQLEdKvEeLl~~ 16 (34)
T 2bni_A 1 XRMKQIEDKLEEILSK 16 (34)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHc
Confidence 5899999999888543
No 10
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=68.49 E-value=6.2 Score=27.08 Aligned_cols=14 Identities=21% Similarity=0.489 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhcC
Q 006989 546 RLAELEQKVDMLQE 559 (622)
Q Consensus 546 rl~~lEekv~~L~~ 559 (622)
||..||+||.+|-.
T Consensus 1 RMnQLEdKvEeLl~ 14 (33)
T 3c3g_A 1 RMKXIEXKLXEIXS 14 (33)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHH
Confidence 68889999988754
No 11
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=67.89 E-value=7.8 Score=26.58 Aligned_cols=14 Identities=29% Similarity=0.513 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhcC
Q 006989 546 RLAELEQKVDMLQE 559 (622)
Q Consensus 546 rl~~lEekv~~L~~ 559 (622)
||..||+||.+|-.
T Consensus 1 RMnQLEdKVEell~ 14 (33)
T 2wq1_A 1 RMKQLEDKIEENTS 14 (33)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHH
Confidence 68889999987744
No 12
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=67.46 E-value=8 Score=26.67 Aligned_cols=15 Identities=20% Similarity=0.470 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhcC
Q 006989 545 KRLAELEQKVDMLQE 559 (622)
Q Consensus 545 ~rl~~lEekv~~L~~ 559 (622)
+||..||+||.+|-.
T Consensus 1 eRMnQLEdKVEeLl~ 15 (34)
T 3c3f_A 1 XRMXQIEXKLEXILS 15 (34)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHh
Confidence 588999999988753
No 13
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=66.78 E-value=6.9 Score=27.01 Aligned_cols=30 Identities=37% Similarity=0.513 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHH
Q 006989 545 KRLAELEQKVDMLQEKPTQMPFEKEELLDAAVYRVDAL 582 (622)
Q Consensus 545 ~rl~~lEekv~~L~~KP~~mP~EKEe~Lnaa~~Rvd~l 582 (622)
+||..||+||.+|-.+ |+ -|.+-|.|.++|
T Consensus 1 eRMnQLE~kVEeLl~~-------n~-~Le~eV~rLk~l 30 (34)
T 2oxj_A 1 XRMXQLEXKVXELLXK-------NX-HLEXEVXRLKXL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHH-------HH-HHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHh-------hh-hHHHHHHHHHHH
Confidence 4889999999887542 32 244445555543
No 14
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=66.69 E-value=6.1 Score=27.33 Aligned_cols=15 Identities=20% Similarity=0.388 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhcC
Q 006989 545 KRLAELEQKVDMLQE 559 (622)
Q Consensus 545 ~rl~~lEekv~~L~~ 559 (622)
.||..||+||.+|-.
T Consensus 1 ~RM~QLEdKVEeLl~ 15 (34)
T 1uo4_A 1 XRMKQIEDKGEEILS 15 (34)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHH
Confidence 388899999987743
No 15
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=63.34 E-value=7.1 Score=26.84 Aligned_cols=13 Identities=54% Similarity=0.736 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhc
Q 006989 546 RLAELEQKVDMLQ 558 (622)
Q Consensus 546 rl~~lEekv~~L~ 558 (622)
||..||+||.+|-
T Consensus 1 RM~QLE~kVEeLl 13 (33)
T 3m48_A 1 RMAQLEAKVEELL 13 (33)
T ss_dssp --CHHHHHHHHHH
T ss_pred CccHHHHHHHHHH
Confidence 7888999998774
No 16
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=59.81 E-value=12 Score=26.22 Aligned_cols=14 Identities=21% Similarity=0.477 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhc
Q 006989 545 KRLAELEQKVDMLQ 558 (622)
Q Consensus 545 ~rl~~lEekv~~L~ 558 (622)
+||..||.||.+|-
T Consensus 1 eRMnQLE~kVEeLl 14 (36)
T 1kd8_A 1 XEVKQLEAEVEEIE 14 (36)
T ss_dssp -CCHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHH
Confidence 47778888887664
No 17
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=59.12 E-value=44 Score=27.86 Aligned_cols=66 Identities=18% Similarity=0.127 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006989 545 KRLAELEQKVDMLQEKPTQMP----FEKEELLDAAVYRVDALEAELIATKKALYEALMRQEELLAYIDSQ 610 (622)
Q Consensus 545 ~rl~~lEekv~~L~~KP~~mP----~EKEe~Lnaa~~Rvd~le~~l~~tkkaL~~al~kQ~El~ayie~~ 610 (622)
+|-.+|=+.+..|..-=|.+| ..|-.+|..|++=|+.|+.+...-..-...--.+|.+|.+-|+.+
T Consensus 16 ~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 16 QRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677888888888887655554 579999999999999999887765555555556666776666544
No 18
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=55.76 E-value=12 Score=29.09 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006989 83 LHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWADM 130 (622)
Q Consensus 83 ~~~V~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~ 130 (622)
++.|++|++.. | ..|. ..+-.-|+++++|++.|+.+|.++
T Consensus 10 ee~l~~L~emF------P-~ld~-~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 10 EEDLKAIQDMF------P-NMDQ-EVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp HHHHHHHHHHC------S-SSCH-HHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHC------C-CCCH-HHHHHHHHHcCCCHHHHHHHHHcC
Confidence 35667777654 3 3555 579999999999999999998654
No 19
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=53.85 E-value=24 Score=24.66 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhcCC
Q 006989 545 KRLAELEQKVDMLQEK 560 (622)
Q Consensus 545 ~rl~~lEekv~~L~~K 560 (622)
+||..||+||.+|-.+
T Consensus 1 eRMnQLE~KVEeLl~~ 16 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSK 16 (36)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH
Confidence 5888899999887543
No 20
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=53.39 E-value=64 Score=26.27 Aligned_cols=63 Identities=11% Similarity=0.179 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006989 545 KRLAELEQKVDMLQEKPTQMP---FEKEELLDAAVYRVDALEAELIATKKALYEALMRQEELLAYI 607 (622)
Q Consensus 545 ~rl~~lEekv~~L~~KP~~mP---~EKEe~Lnaa~~Rvd~le~~l~~tkkaL~~al~kQ~El~ayi 607 (622)
+|...|=+.+..|..=-|..| ..|-.+|..|++=|+.|+.+...-+.-+.+.-..+.+|-+-|
T Consensus 12 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 12 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577778888888876644332 489999999999999999888776655544444444444443
No 21
>1m62_A BAG-family molecular chaperone regulator-4; BAG domain, SODD, silencer of death domains, HSP70/HSC70 CO-chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=53.10 E-value=31 Score=29.00 Aligned_cols=65 Identities=22% Similarity=0.371 Sum_probs=48.3
Q ss_pred ccHHHHHHHHHHHHHHHHHhcCCCCCCChhHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 006989 538 DFLSPVLKRLAELEQKVDMLQEKPTQMPFEKE-----ELLDAAVYRVDALEAE----LIATKKALYEALMRQEELLAYID 608 (622)
Q Consensus 538 ~~~~~~~~rl~~lEekv~~L~~KP~~mP~EKE-----e~Lnaa~~Rvd~le~~----l~~tkkaL~~al~kQ~El~ayie 608 (622)
.-+..+...+.+|+..|+....| +.||| |||.--+=.+|++|.+ +-..+|++ +-+=.-++++||
T Consensus 11 ~~I~~I~~ev~~L~~~V~~f~g~----~~dkey~~L~E~L~k~LLkLD~Ie~eG~~~~R~~RK~~---Vk~iQ~~l~~LD 83 (87)
T 1m62_A 11 KKIIHVLEKVQYLEQEVEEFVGK----KTDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEA---VCKIQAILEKLE 83 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCC----TTSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC----cchHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHH---HHHHHHHHHHHH
Confidence 45788889999999999999987 46774 7899999999999887 55555543 333344566665
Q ss_pred H
Q 006989 609 S 609 (622)
Q Consensus 609 ~ 609 (622)
.
T Consensus 84 ~ 84 (87)
T 1m62_A 84 K 84 (87)
T ss_dssp H
T ss_pred h
Confidence 5
No 22
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.63 E-value=17 Score=29.05 Aligned_cols=42 Identities=21% Similarity=0.310 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006989 81 EELHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWADM 130 (622)
Q Consensus 81 ~E~~~V~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~ 130 (622)
+..+++++|++.. | ..|. ..+..-|+++++|++.|++.|.++
T Consensus 17 ~~~~~v~~L~~MF------P-~lD~-~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 17 EFNQAMDDFKTMF------P-NMDY-DIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CSHHHHHHHHHHC------S-SSCH-HHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHC------C-CCCH-HHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3457788888765 3 3455 578899999999999999998765
No 23
>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=52.58 E-value=19 Score=30.96 Aligned_cols=68 Identities=21% Similarity=0.352 Sum_probs=49.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHhcCCCCCCChhHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 006989 535 TEADFLSPVLKRLAELEQKVDMLQEKPTQMPFEKE-----ELLDAAVYRVDALEAE----LIATKKALYEALMRQEELLA 605 (622)
Q Consensus 535 ~~~~~~~~~~~rl~~lEekv~~L~~KP~~mP~EKE-----e~Lnaa~~Rvd~le~~----l~~tkkaL~~al~kQ~El~a 605 (622)
..-.-+..+...+.+|+..|+.+..++ .||| |||.--+=.+|++|.| +-..+|++ +-+=.-+++
T Consensus 21 ~~~~kI~~I~~ev~~L~~~V~~f~G~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~~RK~~---Vk~iQ~~l~ 93 (99)
T 1m7k_A 21 PSIKKIIHVLEKVQYLEQEVEEFVGKK----TDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEA---VCKIQAILE 93 (99)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCSCT----TSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHH---HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCc----hHHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHH---HHHHHHHHH
Confidence 344568889999999999999999874 6674 7888889999999877 55555543 333344555
Q ss_pred HHHH
Q 006989 606 YIDS 609 (622)
Q Consensus 606 yie~ 609 (622)
+||.
T Consensus 94 ~LD~ 97 (99)
T 1m7k_A 94 KLEK 97 (99)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5554
No 24
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=48.83 E-value=26 Score=24.24 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhcCC
Q 006989 545 KRLAELEQKVDMLQEK 560 (622)
Q Consensus 545 ~rl~~lEekv~~L~~K 560 (622)
+||..||+||.+|-+|
T Consensus 1 ~RMnQledKvEel~~~ 16 (34)
T 2r2v_A 1 MKLKQVADKLEEVASK 16 (34)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH
Confidence 4788999999887654
No 25
>3a8y_C BAG family molecular chaperone regulator 5; BAG domain, HSP70, ATPase domain, protein complex, triple helix, structural genomics, NPPSFA; 2.30A {Homo sapiens}
Probab=48.43 E-value=33 Score=31.39 Aligned_cols=67 Identities=25% Similarity=0.392 Sum_probs=51.6
Q ss_pred ccHHHHHHHHHHHHHHHHHhcCCCCCCChhHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 006989 538 DFLSPVLKRLAELEQKVDMLQEKPTQMPFEKE-----ELLDAAVYRVDALEAE----LIATKKALYEALMRQEELLAYID 608 (622)
Q Consensus 538 ~~~~~~~~rl~~lEekv~~L~~KP~~mP~EKE-----e~Lnaa~~Rvd~le~~----l~~tkkaL~~al~kQ~El~ayie 608 (622)
..+..+..++++|+.+|+....| +.||| |||.--+=+.|++|.+ +-..+|+ ++-+=.-++++||
T Consensus 34 ~aI~~V~~eVd~L~~eV~~F~G~----~~dkey~~L~E~L~k~LLKLD~IdteGd~~vR~aRK~---aVk~VQ~~Le~LD 106 (142)
T 3a8y_C 34 KAVWNVLGNLSEIQGEVLSFDGN----RTDKNYIRLEELLTKQLLALDAVDPQGEEKCKAARKQ---AVRLAQNILSYLD 106 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSC----TTSHHHHHHHHHHHHHHHHHHTCCCTTCHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHH---HHHHHHHHHHHHH
Confidence 34788899999999999999777 56774 7899999999999877 4455554 4555566778888
Q ss_pred HHH
Q 006989 609 SQE 611 (622)
Q Consensus 609 ~~k 611 (622)
.++
T Consensus 107 ~k~ 109 (142)
T 3a8y_C 107 LKS 109 (142)
T ss_dssp HHH
T ss_pred Hhh
Confidence 765
No 26
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.34 E-value=50 Score=26.10 Aligned_cols=42 Identities=14% Similarity=0.114 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 006989 79 NVEELHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWA 128 (622)
Q Consensus 79 d~~E~~~V~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~ 128 (622)
...+.+.|.+|...-. ..|...-..||.+.+||++.|+..+-
T Consensus 15 s~~~~e~i~qF~~ITg--------~~d~~~A~~~Le~~~WnLe~Av~~ff 56 (67)
T 2dam_A 15 TQEQTEKLLQFQDLTG--------IESMDQCRHTLEQHNWNIEAAVQDRL 56 (67)
T ss_dssp CHHHHHHHHHHHHHHC--------CSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHhC--------CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5556778999988751 13445788999999999999987764
No 27
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=41.20 E-value=1.1e+02 Score=23.01 Aligned_cols=46 Identities=9% Similarity=0.143 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006989 568 KEELLDAAVYRVDALEAELIATKKALYEALMRQEELLAYIDSQERA 613 (622)
Q Consensus 568 KEe~Lnaa~~Rvd~le~~l~~tkkaL~~al~kQ~El~ayie~~k~~ 613 (622)
.++-++..=.+++.++.++..++..|..+...+..+.+.|.+++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556788899999999999999999999999999888654
No 28
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=38.46 E-value=75 Score=25.86 Aligned_cols=58 Identities=22% Similarity=0.188 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006989 541 SPVLKRLAELEQKVDMLQEKPTQMPFEKEELLDAAVYRVDALEAELIATKKALYEALMRQEE 602 (622)
Q Consensus 541 ~~~~~rl~~lEekv~~L~~KP~~mP~EKEe~Lnaa~~Rvd~le~~l~~tkkaL~~al~kQ~E 602 (622)
-....|+..+|.++.....+- ...|+-+.+=-.||..||.||..+.-.|.++..+-++
T Consensus 16 d~a~~~~~~~e~~l~~~e~~~----~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 16 ENALDRAEQAEADKKAAEERS----KQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666766666655432 3456667777789999999999999999888777554
No 29
>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} SCOP: a.7.7.1
Probab=38.17 E-value=47 Score=28.58 Aligned_cols=66 Identities=20% Similarity=0.357 Sum_probs=47.4
Q ss_pred ccHHHHHHHHHHHHHHHHHhcCCCCCCChhH-----HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 006989 538 DFLSPVLKRLAELEQKVDMLQEKPTQMPFEK-----EELLDAAVYRVDALEAE----LIATKKALYEALMRQEELLAYID 608 (622)
Q Consensus 538 ~~~~~~~~rl~~lEekv~~L~~KP~~mP~EK-----Ee~Lnaa~~Rvd~le~~----l~~tkkaL~~al~kQ~El~ayie 608 (622)
.-+..+...+.+|+..|.....|+ .|| +|||.--+=.+|++|.| +-..+|+ ++-+=.-++++||
T Consensus 18 ~kI~~I~~ev~~L~~~V~~f~g~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~iR~~RK~---~Vk~iQ~~l~~LD 90 (99)
T 1ugo_A 18 SRLQEIQREVKAIEPQVVGFSGLS----DDKNYKRLERILTKQLFEIDSVDTEGKGDIQQARKR---AAQETERLLKELE 90 (99)
T ss_dssp HHHHHHHHHHHHSHHHHHTCCCCT----TSSHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHHHHHHHcCcCcCCcHHHHHHHHH---HHHHHHHHHHHHH
Confidence 357888899999999999998887 355 48888889999999876 3334443 3333345666666
Q ss_pred HH
Q 006989 609 SQ 610 (622)
Q Consensus 609 ~~ 610 (622)
.+
T Consensus 91 ~k 92 (99)
T 1ugo_A 91 QN 92 (99)
T ss_dssp HH
T ss_pred hc
Confidence 53
No 30
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=37.97 E-value=1.7e+02 Score=26.75 Aligned_cols=68 Identities=24% Similarity=0.382 Sum_probs=51.6
Q ss_pred ccccHHHHHHHH--------HHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006989 536 EADFLSPVLKRL--------AELEQKVDMLQEKPTQMPFEKEELLDAAVYRVDALEAELIATKKALYEALMRQEELLAYI 607 (622)
Q Consensus 536 ~~~~~~~~~~rl--------~~lEekv~~L~~KP~~mP~EKEe~Lnaa~~Rvd~le~~l~~tkkaL~~al~kQ~El~ayi 607 (622)
+.+.|..-+++| +.+|.-++.| |..=-.|.|+ +.||+.||.|+...-+-|.+++.+=++|++-|
T Consensus 51 ~~~~f~~~~~ela~dli~kakqIe~LIdsL---Pg~~~seeeQ-----~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v 122 (151)
T 1yke_B 51 PPEEFSNTIDELSTDIILKTRQINKLIDSL---PGVDVSAEEQ-----LRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHV 122 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---TTSSSCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456676666666 6777777776 3322344444 58999999999999999999999999999988
Q ss_pred HHHH
Q 006989 608 DSQE 611 (622)
Q Consensus 608 e~~k 611 (622)
+..-
T Consensus 123 ~~~l 126 (151)
T 1yke_B 123 DSLI 126 (151)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
No 31
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.49 E-value=70 Score=24.77 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Q 006989 79 NVEELHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMW 127 (622)
Q Consensus 79 d~~E~~~V~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l 127 (622)
...+.+.|.+|...- ..+. ..-..||.+.+||++.|+..+
T Consensus 12 s~~~~e~i~qF~~iT--------g~~~-~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 12 SSALKGLIQQFTTIT--------GASE-SVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp CHHHHHHHHHHHHHT--------CCCH-HHHHHHHHTTTSCHHHHHHHH
T ss_pred CccHHHHHHHHHHHh--------CCCH-HHHHHHHHHcCCCHHHHHHHH
Confidence 455667888888653 1123 568899999999999998776
No 32
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=36.28 E-value=2.1e+02 Score=25.44 Aligned_cols=68 Identities=22% Similarity=0.379 Sum_probs=50.9
Q ss_pred ccccHHHHHHHH--------HHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006989 536 EADFLSPVLKRL--------AELEQKVDMLQEKPTQMPFEKEELLDAAVYRVDALEAELIATKKALYEALMRQEELLAYI 607 (622)
Q Consensus 536 ~~~~~~~~~~rl--------~~lEekv~~L~~KP~~mP~EKEe~Lnaa~~Rvd~le~~l~~tkkaL~~al~kQ~El~ayi 607 (622)
+.+.|..-+++| +.+|.-++.| |..=-.|.|+ +.||+.||.|+...-+-|.+++.+=++|++-|
T Consensus 51 ~~~~f~~~~~ela~dli~k~kqIe~LIdsL---P~~~~see~Q-----~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v 122 (132)
T 1ykh_B 51 PPEEFSNTIDELSTDIILKTRQINKLIDSL---PGVDVSAEEQ-----LRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHV 122 (132)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTTTCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666 6677777776 3322244444 58999999999999999999999999999988
Q ss_pred HHHH
Q 006989 608 DSQE 611 (622)
Q Consensus 608 e~~k 611 (622)
+..-
T Consensus 123 ~~~l 126 (132)
T 1ykh_B 123 DSMI 126 (132)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
No 33
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=33.94 E-value=1.5e+02 Score=30.39 Aligned_cols=65 Identities=12% Similarity=0.082 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCCCCCCChh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 006989 548 AELEQKVDMLQEKPTQMPFE-----KEELLDAAVYRVDALEAELIATKKALYEALMR-QEELLAYIDSQER 612 (622)
Q Consensus 548 ~~lEekv~~L~~KP~~mP~E-----KEe~Lnaa~~Rvd~le~~l~~tkkaL~~al~k-Q~El~ayie~~k~ 612 (622)
+++++-+..+.-..-.+|.+ =.++|..--.|+..|+.+|..+++.|.+-+.+ ...|.++.+....
T Consensus 199 ~~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~ 269 (357)
T 3rrk_A 199 EAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKD 269 (357)
T ss_dssp HHHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888888889953 35888999999999999999999999998888 6777766666553
No 34
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=33.76 E-value=32 Score=32.25 Aligned_cols=76 Identities=8% Similarity=0.060 Sum_probs=41.4
Q ss_pred ccccchhhhhcccccccccc-ccccccCCCHHHHH-HHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 006989 51 SSKLKPSFKKKSRRKSVERV-PVSIEDVRNVEELH-AVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWA 128 (622)
Q Consensus 51 ~~~~~~s~~kk~~r~~~~~~-~~siedl~d~~E~~-~V~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~ 128 (622)
..+++..|+.||- ...+ .-+++++.++++.+ +...++..+......+ ......-+.+||..++|+.+-+...+.
T Consensus 86 ~~~I~~eL~~KGI---~~~~I~~al~~~~~~de~e~a~~l~~Kk~~~~~~~~-~~~~~~K~~~~L~rrGF~~~~I~~vl~ 161 (177)
T 3e3v_A 86 PKVIKLNLSKKGI---DDNIAEDALILYTDKLQVEKGVTLAEKLANRYSHDS-YRNKQNKIKQSLLTKGFSYDIIDTIIQ 161 (177)
T ss_dssp HHHHHHHHHTTTC---CHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTSC-HHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHhCCchhHHHHHHHHHHHHHhhccCCC-hHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 3457788888873 3333 34455654334433 3333333332211111 011124688999999999998877776
Q ss_pred HH
Q 006989 129 DM 130 (622)
Q Consensus 129 ~~ 130 (622)
..
T Consensus 162 ~l 163 (177)
T 3e3v_A 162 EL 163 (177)
T ss_dssp HH
T ss_pred HC
Confidence 53
No 35
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=33.60 E-value=67 Score=22.83 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Q 006989 82 ELHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMW 127 (622)
Q Consensus 82 E~~~V~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l 127 (622)
+.+.|.+|...- . .+. ..-..||.+.+||++.|+..+
T Consensus 5 ~~~~i~~F~~iT-------g-~~~-~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 5 RQDALREFVAVT-------G-AEE-DRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp HHHHHHHHHHHT-------C-CCH-HHHHHHHHHTTSCSHHHHHHH
T ss_pred HHHHHHHHHHHh-------C-cCH-HHHHHHHHHcCCCHHHHHHHH
Confidence 446778887643 1 133 578899999999999998765
No 36
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=33.13 E-value=1e+02 Score=27.27 Aligned_cols=74 Identities=14% Similarity=0.208 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCh--------------hHHHHHHHHHHHHHHHHH----------------HHHHHH
Q 006989 541 SPVLKRLAELEQKVDMLQEKPTQMPF--------------EKEELLDAAVYRVDALEA----------------ELIATK 590 (622)
Q Consensus 541 ~~~~~rl~~lEekv~~L~~KP~~mP~--------------EKEe~Lnaa~~Rvd~le~----------------~l~~tk 590 (622)
.+++-+|..||..+..|..+-.++-. +.++|.+.--.|+..|++ ++...+
T Consensus 5 ~~i~~~l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~ 84 (119)
T 3etw_A 5 ASLVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDAL 84 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 56677777777777777666544433 233444444555555553 577889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 006989 591 KALYEALMRQEELLAYIDSQERAK 614 (622)
Q Consensus 591 kaL~~al~kQ~El~ayie~~k~~k 614 (622)
|.|++-+.+|++++.+.|+-|.-+
T Consensus 85 keLd~~ik~qekiIdnFE~ik~lr 108 (119)
T 3etw_A 85 KKLEAEMEQQKAVISDFEKIQALR 108 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887543
No 37
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=33.00 E-value=68 Score=28.13 Aligned_cols=67 Identities=19% Similarity=0.391 Sum_probs=49.6
Q ss_pred ccHHHHHHHHHHHHHHHHHhcCCCCCCChhHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 006989 538 DFLSPVLKRLAELEQKVDMLQEKPTQMPFEKE-----ELLDAAVYRVDALEAE----LIATKKALYEALMRQEELLAYID 608 (622)
Q Consensus 538 ~~~~~~~~rl~~lEekv~~L~~KP~~mP~EKE-----e~Lnaa~~Rvd~le~~----l~~tkkaL~~al~kQ~El~ayie 608 (622)
..+..+...+.+|+..|+....++ .||| |||.--+=.+|++|.| +-..+|+ ++-+=.-++++||
T Consensus 30 ~~I~~I~~eV~~L~~qV~~f~g~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~aRK~---aVk~iQ~~l~~LD 102 (111)
T 1uk5_A 30 LKVEAILEKVQGLEQAVDSFEGKK----TDKKYLMIEEYLTKELLALDSVDPEGRADVRQARRD---GVRKVQTILEKLE 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSCS----SSHHHHHHHHHHHHHHHHHHSCCCSSCHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCc----chHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHH---HHHHHHHHHHHHH
Confidence 457777888899999999998875 6774 7899999999999887 5455554 3444455677777
Q ss_pred HHH
Q 006989 609 SQE 611 (622)
Q Consensus 609 ~~k 611 (622)
.+.
T Consensus 103 ~k~ 105 (111)
T 1uk5_A 103 QKA 105 (111)
T ss_dssp HHH
T ss_pred hcc
Confidence 654
No 38
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=32.81 E-value=2.6e+02 Score=25.96 Aligned_cols=69 Identities=12% Similarity=0.149 Sum_probs=51.3
Q ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006989 532 PRFTEADFLSPVLKRLAELEQKVDMLQEKPTQMPFEKEELLDAAVYRVDALEAELIATKKALYEALMRQEELLAYIDSQE 611 (622)
Q Consensus 532 ~~~~~~~~~~~~~~rl~~lEekv~~L~~KP~~mP~EKEe~Lnaa~~Rvd~le~~l~~tkkaL~~al~kQ~El~ayie~~k 611 (622)
+.+.+.+++...+++|++|+..+..+ |..+|+.+.||+.=.+.. .+..+...---|..|.+|.+..+
T Consensus 10 ~~i~~~~~~~~alr~ia~l~r~~~~i-----------~~~~n~eI~~ik~~~~~~--~~~l~~~i~~l~~~l~~y~e~~r 76 (171)
T 2p2u_A 10 VIVADIRQAEGALAEIATIDRKVGEI-----------EAQMNEAIDAAKARASQK--SAPLLARRKELEDGVATFATLNK 76 (171)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhH
Confidence 34578888999999999999999876 456788888888655443 33444555566778889998876
Q ss_pred Hh
Q 006989 612 RA 613 (622)
Q Consensus 612 ~~ 613 (622)
..
T Consensus 77 ~e 78 (171)
T 2p2u_A 77 TE 78 (171)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 39
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=29.54 E-value=77 Score=26.37 Aligned_cols=41 Identities=24% Similarity=0.317 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006989 83 LHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWADM 130 (622)
Q Consensus 83 ~~~V~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~ 130 (622)
..-|+++|..|- +...| ..|.+-....+||+++|+..+.+-
T Consensus 35 ~SCLd~iR~VlG------dsV~e-~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 35 YSCLDHMREVLG------DAVPD-DILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHHHTT------TTSCH-HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc------ccCCH-HHHHHHHHHhcCCHHHHHHHHHhc
Confidence 456788888772 33456 478899999999999999988653
No 40
>1pl5_A Regulatory protein SIR4; parallel coiled coil homodimer, DNA binding protein/transcription complex; 2.50A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=29.30 E-value=91 Score=27.04 Aligned_cols=40 Identities=28% Similarity=0.253 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006989 577 YRVDALEAELIATKKALYEALMRQEELLAYIDSQERAKCR 616 (622)
Q Consensus 577 ~Rvd~le~~l~~tkkaL~~al~kQ~El~ayie~~k~~k~~ 616 (622)
-||-+|.-+|--|||.|+.|-.+--|--|-|.+.-++.|+
T Consensus 95 iritslqgdltftkkclenarsqisekdakinklmekdfq 134 (142)
T 1pl5_A 95 IRITSLQGDLTFTKKCLENARSQISEKDAKINKLMEKDFQ 134 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred eeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHHHHHhhh
Confidence 4899999999999999999988777777777666555544
No 41
>2q9q_C DNA replication complex GINS protein PSF1; elongated spindle, helix bundle, replication; HET: DNA; 2.36A {Homo sapiens}
Probab=28.50 E-value=1.2e+02 Score=28.81 Aligned_cols=32 Identities=19% Similarity=0.132 Sum_probs=22.2
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 006989 559 EKPTQMPFEKEELLDAAVYRVDALEAELIATK 590 (622)
Q Consensus 559 ~KP~~mP~EKEe~Lnaa~~Rvd~le~~l~~tk 590 (622)
+-|.++||=.++++..-+.+|..+++++.+..
T Consensus 16 ~~~~~L~py~~dlv~~v~~ei~~~~~~~~~~~ 47 (196)
T 2q9q_C 16 APEGQLPAFNEDGLRQVLEEMKALYEQNQSDV 47 (196)
T ss_dssp SCTTCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 33336777777788888888888877766443
No 42
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=27.61 E-value=1.3e+02 Score=21.93 Aligned_cols=37 Identities=11% Similarity=0.191 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHH
Q 006989 82 ELHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQM 126 (622)
Q Consensus 82 E~~~V~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~ 126 (622)
..+.|.+|...- ..+|...-..||.+.+||++.|+..
T Consensus 5 ~de~ia~F~~iT--------G~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 5 REMILADFQACT--------GIENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHHH--------CCCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHHH--------CCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 356788888754 2355346788999999999999653
No 43
>1nyh_A Regulatory protein SIR4; coiled-coil, transcription regulation, repressor, transcript repressor; 3.10A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=27.23 E-value=1e+02 Score=27.33 Aligned_cols=40 Identities=28% Similarity=0.253 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006989 577 YRVDALEAELIATKKALYEALMRQEELLAYIDSQERAKCR 616 (622)
Q Consensus 577 ~Rvd~le~~l~~tkkaL~~al~kQ~El~ayie~~k~~k~~ 616 (622)
-||-+|.-+|--|||.|+.|-..--|--|-|.+.-++.|+
T Consensus 119 iritslqgdltftkkclenarsqisekdakinklmekdfq 158 (166)
T 1nyh_A 119 IRITSLQGDLTFTKKCLENARSQISEKDAKINKLMEKDFQ 158 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC----
T ss_pred eeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHHHHHhhc
Confidence 4899999999999999999988777777777666555554
No 44
>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A
Probab=26.73 E-value=44 Score=24.04 Aligned_cols=20 Identities=35% Similarity=0.439 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006989 573 DAAVYRVDALEAELIATKKA 592 (622)
Q Consensus 573 naa~~Rvd~le~~l~~tkka 592 (622)
.+|++|++.+|+++..++|.
T Consensus 20 d~A~drAe~~E~~~k~~~~~ 39 (40)
T 2z5i_I 20 ENALDRAEQLENEVARLKKL 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHhhcc
Confidence 37899999999999988873
No 45
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=26.48 E-value=34 Score=24.80 Aligned_cols=12 Identities=33% Similarity=0.614 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHh
Q 006989 546 RLAELEQKVDML 557 (622)
Q Consensus 546 rl~~lEekv~~L 557 (622)
|.+|||++|..|
T Consensus 18 ~naeLEervstL 29 (42)
T 2oqq_A 18 KNSELEERLSTL 29 (42)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 46
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=25.53 E-value=90 Score=26.65 Aligned_cols=46 Identities=24% Similarity=0.352 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCCCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006989 550 LEQKVDMLQEKPTQM--PFEKEELLDAAVYRVDALEAELIATKKALYEA 596 (622)
Q Consensus 550 lEekv~~L~~KP~~m--P~EKEe~Lnaa~~Rvd~le~~l~~tkkaL~~a 596 (622)
|+.+..+....|. | |.--|.-|+.+-.+|+.|+++|-+-...|.++
T Consensus 41 l~Km~~vY~~nP~-~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 41 LKKMKDVYEKTPQ-MGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHHHHHHHCGG-GCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666665 6 77779999999999999999999988888776
No 47
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=24.64 E-value=44 Score=30.81 Aligned_cols=73 Identities=12% Similarity=0.060 Sum_probs=39.4
Q ss_pred ccccchhhhhcccccccccc-ccccccCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 006989 51 SSKLKPSFKKKSRRKSVERV-PVSIEDVRNVEELHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWA 128 (622)
Q Consensus 51 ~~~~~~s~~kk~~r~~~~~~-~~siedl~d~~E~~~V~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~ 128 (622)
..+++..|+.||- ...+ .-+++++.+++...+...++..... ..+.......-+.+||..++|+.+.+...+.
T Consensus 84 ~~~I~~eL~~KGI---~~~~I~~al~~~~~de~e~a~~l~~Kk~~~--~~~~~~~~k~K~~~~L~rrGF~~~~I~~~l~ 157 (162)
T 3dfg_A 84 PLHIRAELGTHGL---DSDAVSAAMATFEGDWTENALDLIRRRFGE--DGPVDLAQRRKAADLLARRGFDGNSIRLATR 157 (162)
T ss_dssp HHHHHHHHHHTTC---CHHHHHHHHTTCCSCHHHHHHHHHHHHHCT--TCCCSHHHHHHHHHHHHHTTCCHHHHHHHTT
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHhCcHhHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHh
Confidence 3467888888873 3333 3445655332223333333333311 1121112224588999999999988766553
No 48
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=24.53 E-value=1.3e+02 Score=25.50 Aligned_cols=56 Identities=13% Similarity=-0.004 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006989 543 VLKRLAELEQKVDMLQEKPTQMPFEKEELLDAAVYRVDALEAELIATKKALYEALMRQEE 602 (622)
Q Consensus 543 ~~~rl~~lEekv~~L~~KP~~mP~EKEe~Lnaa~~Rvd~le~~l~~tkkaL~~al~kQ~E 602 (622)
.+.|...+|.++..+..+- ..+|+=+.+=-.|+..||.||+.+...|.++..+-++
T Consensus 21 a~drae~~e~~~k~~e~~~----~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 21 ALDRAEQAEADKKAAEERS----KQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666655442 2466667766789999999999999888888766544
No 49
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.53 E-value=1.6e+02 Score=22.18 Aligned_cols=38 Identities=16% Similarity=0.062 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006989 84 HAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWADM 130 (622)
Q Consensus 84 ~~V~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~ 130 (622)
..|++|++.= +.|.+.-++-|++.++|+++|++.|-..
T Consensus 11 ~~l~~L~~MG---------F~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 11 VQLEQLRSMG---------FLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHHT---------CCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcC---------CCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4566666542 3443456899999999999999887653
No 50
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.46 E-value=1.3e+02 Score=21.75 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006989 567 EKEELLDAAVYRVDALEAELIATKKALYEALMRQEELLA 605 (622)
Q Consensus 567 EKEe~Lnaa~~Rvd~le~~l~~tkkaL~~al~kQ~El~a 605 (622)
-|||||+. ++|| -.|.++|++=+.+-=.||.||-+
T Consensus 3 tk~~l~qk-I~kV---drEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 3 SKEELIQN-MDRV---DREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp SSSHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777763 4454 47888998888888888887755
No 51
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=22.85 E-value=1.7e+02 Score=23.59 Aligned_cols=43 Identities=16% Similarity=0.239 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 006989 79 NVEELHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWAD 129 (622)
Q Consensus 79 d~~E~~~V~efRq~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~ 129 (622)
..+-...|.+++..+ |. ..+ .++.+.|..++.|++.++..|-+
T Consensus 10 ~~~l~s~I~qV~DLf------Pd-LG~-gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 10 GVELDSLISQVKDLL------PD-LGE-GFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp SHHHHHHHHHHHHHC------CS-SCH-HHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc------cc-CCH-HHHHHHHHHhCCCHHHHHHHHHc
Confidence 344467778877765 44 455 48999999999999999988754
No 52
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=21.65 E-value=1.1e+02 Score=24.58 Aligned_cols=47 Identities=13% Similarity=0.245 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCC---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006989 545 KRLAELEQKVDMLQEKPTQMP---FEKEELLDAAVYRVDALEAELIATKK 591 (622)
Q Consensus 545 ~rl~~lEekv~~L~~KP~~mP---~EKEe~Lnaa~~Rvd~le~~l~~tkk 591 (622)
+|...|=+.+..|..--|.+| ..|-.+|..|+.=|..|+.++..-+.
T Consensus 22 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~ 71 (80)
T 1hlo_A 22 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666766665433333 47999999999999999988765443
No 53
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=21.29 E-value=1.1e+02 Score=23.56 Aligned_cols=43 Identities=26% Similarity=0.153 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCh----hHHHHHHHHHHHHHHHHHHHH
Q 006989 545 KRLAELEQKVDMLQEKPTQMPF----EKEELLDAAVYRVDALEAELI 587 (622)
Q Consensus 545 ~rl~~lEekv~~L~~KP~~mP~----EKEe~Lnaa~~Rvd~le~~l~ 587 (622)
+|+.+|-+-++.|..--|.+|. -|=+.|..|+.=|..|+.-|.
T Consensus 12 ~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 12 NRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999988777775 578999999999999987664
No 54
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=21.15 E-value=1.3e+02 Score=25.80 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCChh----HHHHHHHHHHHHHHHHHHHHH
Q 006989 544 LKRLAELEQKVDMLQEKPTQMPFE----KEELLDAAVYRVDALEAELIA 588 (622)
Q Consensus 544 ~~rl~~lEekv~~L~~KP~~mP~E----KEe~Lnaa~~Rvd~le~~l~~ 588 (622)
..||..|-+-++.|...-+.+|++ |=|.|..|++-|..|..-|..
T Consensus 34 r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 34 MSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 469999999999999998889987 789999999999999887754
No 55
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=20.80 E-value=1.2e+02 Score=20.57 Aligned_cols=21 Identities=19% Similarity=0.072 Sum_probs=17.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHH
Q 006989 107 HMLLRFLKARKFDIAKATQMW 127 (622)
Q Consensus 107 ~~LLRFLrArkfDvekA~~~l 127 (622)
....+-|+++++|++.|...|
T Consensus 19 ~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 19 LEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 356889999999999998754
No 56
>3hf0_A GCN4-PLI SIDE chain sequence on AN (alpha-alpha- beta-alpha-beta-alpha-beta) backbone...; helix bundle, foldamer, alpha/beta-peptide, coiled coil; HET: BIL XCP B3Y XPC 16A; 2.10A {Synthetic}
Probab=20.73 E-value=1.9e+02 Score=19.30 Aligned_cols=28 Identities=29% Similarity=0.300 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006989 568 KEELLDAAVYRVDALEAELIATKKALYE 595 (622)
Q Consensus 568 KEe~Lnaa~~Rvd~le~~l~~tkkaL~~ 595 (622)
.|.-|.+.+....-.|.||...|..|.+
T Consensus 6 ~e~kl~e~l~kl~h~e~el~r~k~ll~e 33 (34)
T 3hf0_A 6 XEXKLXEXLXKLXHXEXELXRXKXLLXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 4566788888899999999999988865
No 57
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=20.11 E-value=1.4e+02 Score=22.21 Aligned_cols=24 Identities=13% Similarity=0.032 Sum_probs=21.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Q 006989 107 HMLLRFLKARKFDIAKATQMWADM 130 (622)
Q Consensus 107 ~~LLRFLrArkfDvekA~~~l~~~ 130 (622)
..+.+-|.++++|++.|.++|.+.
T Consensus 21 ~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 21 SKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhc
Confidence 468899999999999999998765
No 58
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=20.05 E-value=49 Score=30.24 Aligned_cols=46 Identities=24% Similarity=0.258 Sum_probs=31.6
Q ss_pred EEEeCCCCCCCCCChHHHHHHHHHHHHhhhccccccceEEEEecChhHHHHHHHHhhccChhhhcceEEcCccchHHH
Q 006989 226 TILDVQGVGFKSLTKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVRRFLDPKTTSKIHVLGNKYQSKL 303 (622)
Q Consensus 226 iIiDl~Gvsl~~~~~~~~~~ik~i~kilq~~YPerL~~i~IINaP~~f~~lw~lVKpFLdpkT~~KI~~lg~~~~~~L 303 (622)
+|||.+|..+..+.. .+.+++. .=..|.|||+ +||.+-|+++...+
T Consensus 2 ~viDA~g~~LGRLAs-------~vAk~L~-----~Gd~VVViNa--------------------eki~iTG~k~~~K~ 47 (142)
T 1j3a_A 2 RIINADGLILGRLAS-------RVAKMLL-----EGEEVVIVNA--------------------EKAVITGNREVIFS 47 (142)
T ss_dssp EEEECTTBBHHHHHH-------HHHHHHH-----TTCCEEEECG--------------------GGCEEESCHHHHHH
T ss_pred EEEeCCCCchHHHHH-------HHHHHHh-----cCCEEEEEeC--------------------eeeEecccHHhhee
Confidence 589999987755432 2223333 5578999998 78999998765544
No 59
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=20.04 E-value=3.6e+02 Score=32.16 Aligned_cols=62 Identities=23% Similarity=0.249 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHhc------CCCCCCChhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006989 542 PVLKRLAELEQKVDMLQ------EKPTQMPFEK--EELLDAAVYRVDALEAELIATKKALYEALMRQEELLAY 606 (622)
Q Consensus 542 ~~~~rl~~lEekv~~L~------~KP~~mP~EK--Ee~Lnaa~~Rvd~le~~l~~tkkaL~~al~kQ~El~ay 606 (622)
+..+-.++||..+..|+ ++|+-+|++- -+-|+.++.+...+|+|- ..+|.+.+.||+.|..-
T Consensus 818 ~r~~ek~~Le~l~~~iqtklrl~~r~~~~p~~gl~~~dL~~~W~~Le~ae~eR---e~~L~~el~Rqe~L~~L 887 (1010)
T 1g8x_A 818 PKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEH---AEALRIELKRQKKIAVL 887 (1010)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCTTCSHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 34444555665555544 5577778751 345888887776666664 46999999999887643
Done!