BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006991
(622 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255572662|ref|XP_002527264.1| ribonuclease, putative [Ricinus communis]
gi|223533357|gb|EEF35108.1| ribonuclease, putative [Ricinus communis]
Length = 624
Score = 822 bits (2122), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/621 (64%), Positives = 487/621 (78%), Gaps = 10/621 (1%)
Query: 9 PLRI--RSFCTKTVQQNPH---HWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGS 63
PLR+ R FCTK H W +KQITK+NF +SL EI +HI SDFI++SL+ TGS
Sbjct: 7 PLRLQRRLFCTKIHHHRAHTHNQWNVKQITKSNFADSLPEINSHIMCSDFISISLKTTGS 66
Query: 64 FSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPRDEL 123
FSSPWHRVS FDTP+ AYLK+K AAE+FQILQ A+CPF + ASKV AYPYNFHLFPRDEL
Sbjct: 67 FSSPWHRVSPFDTPDVAYLKSKHAAEKFQILQLAVCPFTVSASKVTAYPYNFHLFPRDEL 126
Query: 124 KMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATK 183
GMPSYSF+C TSYLT M +EGFDFN C+ DGISYLS AQES +VRM NP +
Sbjct: 127 NSGMPSYSFSCHTSYLTKMVQEGFDFNACVNDGISYLSRAQESAARVRMKNPFLAKDIVE 186
Query: 184 SSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSM 243
S+S+P VAD+VF++R RSRVK+WKNACTD+ T+ ALV SLRK+VLG E++ SRP +
Sbjct: 187 STSTPG--VADSVFVQRTRSRVKNWKNACTDTS-STDEALVKSLRKLVLGLEEYNSRPCI 243
Query: 244 TIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTF 303
IDVCSERQV LV++ML++F+D LVPLI+PAKGGGTQAVR VLTSS ED+DLL+ ELQ
Sbjct: 244 NIDVCSERQVHLVIEMLQEFADDLVPLIVPAKGGGTQAVRVVLTSSKEDRDLLQMELQNL 303
Query: 304 EFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAF 363
E EQNK++RGFREVIDLIS S+KP+V+HNSLND FIHSKFLAPLPP+M EF CSLRL F
Sbjct: 304 EDEQNKKIRGFREVIDLISGSEKPVVSHNSLNDLAFIHSKFLAPLPPSMEEFTCSLRLVF 363
Query: 364 PQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKI 423
PQVIDVN+L+K+I P+KK+TNI +YLKN FFAP++MEIP A NEGKIHGHNV++I
Sbjct: 364 PQVIDVNHLMKEISPLKKVTNIPMATSYLKNWFFAPVDMEIPFPAMVNEGKIHGHNVMRI 423
Query: 424 CQLFGKLCSILKITPDAIESSDDFLASAINRYANIFYSLPGSSQEPTNEEIRGWTNDKRK 483
CQLF KLC ILK+ P++I+S++ LASAI Y NIF QEPT+E++R WTN+ RK
Sbjct: 424 CQLFAKLCYILKLAPNSIQSNEKNLASAIEAYVNIFSPYFPGPQEPTDEDVRIWTNNTRK 483
Query: 484 VSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFK 543
VSC+D+VFLWGFR R+SAG+LK++LQ SH+VF+E F+VR VD+SCAIVVF +PGLSNT
Sbjct: 484 VSCQDLVFLWGFRYRMSAGMLKSLLQQSHKVFSEEFDVRFVDKSCAIVVFWEPGLSNTLL 543
Query: 544 NVM-NSKAVSGPLREMVSDGLKAAGYETYQRVCSSGLWESALADALDKTLASHNCLSEAA 602
+V+ S + GPLREMVS+G++AA Y+TY RVC GLW LAD+LDK LA + S++
Sbjct: 544 DVLKGSSEIVGPLREMVSEGVRAASYDTYNRVCRLGLWHENLADSLDKALADTDHPSDSD 603
Query: 603 YETKQSEIYLSNE-LINLAEL 622
T S Y +E +INL EL
Sbjct: 604 SVTSSSNTYWCHEWMINLDEL 624
>gi|224136934|ref|XP_002326981.1| predicted protein [Populus trichocarpa]
gi|222835296|gb|EEE73731.1| predicted protein [Populus trichocarpa]
Length = 626
Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/626 (62%), Positives = 493/626 (78%), Gaps = 15/626 (2%)
Query: 8 SPLRIRSFCTKTVQQNPH----HWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGS 63
SPL R + +V + H W IKQ+TK+NF ++L +IK+H+S+SDF+AVSLQNTGS
Sbjct: 5 SPLLQRRLLSTSVTKTHHKPHQQWSIKQVTKSNFADTLKDIKSHVSNSDFVAVSLQNTGS 64
Query: 64 FSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPRDEL 123
FS+PW RVS FDT +TAYLKAK+AAERFQ+L FA+CP ++ASKV AYPYNFHLFPR EL
Sbjct: 65 FSAPWQRVSPFDTADTAYLKAKYAAERFQVLHFAVCPITVRASKVTAYPYNFHLFPRAEL 124
Query: 124 KMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATK 183
KM MPSYSF CQTS L +MA++GFDFN+CI DGISYLS QEST K++MGNP+ + T+
Sbjct: 125 KMEMPSYSFYCQTSSLISMARQGFDFNSCINDGISYLSREQESTAKIQMGNPILAKNVTE 184
Query: 184 SSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEA-----ALVTSLRKIVLGGEQFG 238
S+S+ LSVAD+VF+ER++S +K+WK AC ++ + E ALV SLRK+VLG E++
Sbjct: 185 STST--LSVADSVFVERIKSHIKNWKKACKETSTRKEGNQIQDALVRSLRKLVLGNEEYD 242
Query: 239 SRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKR 298
SRP M IDVCSERQ QLV++ML++F+D +VPLIIPAKGG QAVR VLTSS EDKDLL+
Sbjct: 243 SRPCMNIDVCSERQAQLVVEMLQEFADDVVPLIIPAKGGAMQAVRVVLTSSKEDKDLLQG 302
Query: 299 ELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICS 358
+LQ E E K+VRGFREVIDLISASQKP+V+H SLND T IHSKF+APLPP ++EF+CS
Sbjct: 303 KLQNDEQELKKKVRGFREVIDLISASQKPVVSHGSLNDLTVIHSKFIAPLPPTVDEFMCS 362
Query: 359 LRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGH 418
LRLAFP VIDVN+L+K+I P++K+T+I I+ LKNRFF PI+MEIP QA ENE IHG
Sbjct: 363 LRLAFPLVIDVNHLMKEISPLRKVTSIPVAISQLKNRFFTPIDMEIPCQAMENEDTIHGQ 422
Query: 419 NVVKICQLFGKLCSILKITPDAIESSDDFLASAINRYANIFYSLPGSSQEPTNEEIRGWT 478
NVVKIC+LF +LCSILKI P A++S ++ ASA+ YANIF +S+EP + EI+ WT
Sbjct: 423 NVVKICELFARLCSILKIDPAAVKSDEEKGASALEAYANIFSPFCTASEEPIDGEIKIWT 482
Query: 479 NDKRKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGL 538
N+ R VSCED+VFLWGF +R++AGILK++LQ SHE F++ F+VR+VD SCAIV+F + GL
Sbjct: 483 NNTRTVSCEDMVFLWGFGDRVTAGILKSLLQESHEAFSKEFDVRLVDNSCAIVIFWQHGL 542
Query: 539 SNTFKNVMNSKA-VSGPLREMVSDGLKAAGYETYQRVCSSGLWESALADALDKTLASHNC 597
+ TF N MN + + GPLREMVS+GL+AAGYETY R C GLWES+LAD+LD+ LA +C
Sbjct: 543 TETFLNTMNKCSDMRGPLREMVSEGLRAAGYETYNRACRLGLWESSLADSLDRALADSDC 602
Query: 598 LSEAAYETKQSEIYLSNE-LINLAEL 622
SEA +TK S+ NE +INL +L
Sbjct: 603 ASEADSKTKCSD--RCNEWIINLDDL 626
>gi|224132034|ref|XP_002321239.1| predicted protein [Populus trichocarpa]
gi|222862012|gb|EEE99554.1| predicted protein [Populus trichocarpa]
Length = 628
Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/628 (59%), Positives = 484/628 (77%), Gaps = 17/628 (2%)
Query: 8 SPLRIRSFCTKTVQQNPH----HWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGS 63
SPL R + +V + H W +KQ+TK+NF ++L +IK+H+S+SDF+AVSLQNTG
Sbjct: 5 SPLLQRRLLSTSVTRTHHKPQQQWSVKQVTKSNFADTLEDIKSHVSNSDFVAVSLQNTGF 64
Query: 64 FSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPRDEL 123
FS+PW RVS FDT +TAYLKAK+AAERFQ+L FA+CPF ++ASKV AYPYNFHLFPR EL
Sbjct: 65 FSAPWQRVSPFDTADTAYLKAKYAAERFQVLHFAVCPFTVRASKVTAYPYNFHLFPRAEL 124
Query: 124 KMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATK 183
KM MPSYSF CQTS L +MA++GFDFN+CI DGISYLS QES K++MGNP+ + T+
Sbjct: 125 KMEMPSYSFYCQTSSLISMARQGFDFNSCINDGISYLSREQESAAKIQMGNPILAKNVTE 184
Query: 184 SSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEA-----ALVTSLRKIVLGGEQFG 238
S+S+ LSVAD+VF+ER++S +K+WK AC ++ + E ALV SLRK+VLG E++
Sbjct: 185 STST--LSVADSVFVERIKSHIKNWKKACKETSTRKEGNQIQDALVRSLRKLVLGNEEYD 242
Query: 239 SRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKR 298
SRP M IDVCSERQ QLV++ML++F+D +VPLIIPAKGG QAVR VLTSS EDKDLL+
Sbjct: 243 SRPCMNIDVCSERQAQLVVEMLQEFADDVVPLIIPAKGGAMQAVRVVLTSSKEDKDLLQE 302
Query: 299 E-LQTFEFEQNKRVRGFREVIDLISA-SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFI 356
+ +F E + +G +++L++ + KP+V+H SLND T IHSKF+APLPP ++EF+
Sbjct: 303 NTVISFTREGSPGTKGKSLIVNLVAEYNLKPVVSHGSLNDLTVIHSKFIAPLPPTVDEFM 362
Query: 357 CSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIH 416
CSLRLAFP VIDVN+L+K+I P++K+T+I I+ LKNRFF PI+MEIP QA ENE IH
Sbjct: 363 CSLRLAFPLVIDVNHLMKEISPLRKVTSIPVAISQLKNRFFTPIDMEIPCQAMENEDTIH 422
Query: 417 GHNVVKICQLFGKLCSILKITPDAIESSDDFLASAINRYANIFYSLPGSSQEPTNEEIRG 476
G NVVKIC+LF +LCSILKI P A++S ++ ASA+ YANIF +S+EP + EI+
Sbjct: 423 GQNVVKICELFARLCSILKIDPAAVKSDEEKGASALEAYANIFSPFCTASEEPIDGEIKI 482
Query: 477 WTNDKRKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKP 536
WTN+ R VSCED+VFLWGF +R++AGILK++LQ SHE F++ F+VR+VD SCAIV+F +
Sbjct: 483 WTNNTRTVSCEDMVFLWGFGDRVTAGILKSLLQESHEAFSKEFDVRLVDNSCAIVIFWQH 542
Query: 537 GLSNTFKNVMNSKA-VSGPLREMVSDGLKAAGYETYQRVCSSGLWESALADALDKTLASH 595
GL+ TF N MN + + GPLREMVS+GL+AAGYETY R C GLWES+LAD+LD+ LA
Sbjct: 543 GLTETFLNTMNKCSDMRGPLREMVSEGLRAAGYETYNRACRLGLWESSLADSLDRALADS 602
Query: 596 NCLSEAAYETKQSEIYLSNE-LINLAEL 622
+C SEA +TK S+ NE +INL +L
Sbjct: 603 DCASEADSKTKCSD--RCNEWIINLDDL 628
>gi|15230837|ref|NP_189170.1| Poly(A)-specific ribonuclease PARN-like protein [Arabidopsis
thaliana]
gi|75162449|sp|Q8W4C3.1|PARNL_ARATH RecName: Full=Poly(A)-specific ribonuclease PARN-like; AltName:
Full=Polyadenylate-specific ribonuclease-like protein
gi|17065176|gb|AAL32742.1| Unknown protein [Arabidopsis thaliana]
gi|30725444|gb|AAP37744.1| At3g25430 [Arabidopsis thaliana]
gi|332643489|gb|AEE77010.1| Poly(A)-specific ribonuclease PARN-like protein [Arabidopsis
thaliana]
Length = 618
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/613 (55%), Positives = 452/613 (73%), Gaps = 17/613 (2%)
Query: 17 TKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDT 76
TKT+ Q W +KQ+ K+NF+ +L EI+ I SSDFIA+SLQNTGS+++ WHRVS DT
Sbjct: 16 TKTLNQG--RWSVKQVKKSNFHVTLDEIRTSIDSSDFIALSLQNTGSYAAAWHRVSAIDT 73
Query: 77 PETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQT 136
P+T+YLKAK+AAER+QILQFA+CPF LQ SK+ +PYNFHLFPRDELK GMPSYSF+CQ
Sbjct: 74 PQTSYLKAKYAAERYQILQFALCPFSLQGSKLTVHPYNFHLFPRDELKCGMPSYSFSCQA 133
Query: 137 SYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTV 196
S LTAMA+EGFDFN CIY+GISYLS AQES K NP+ D T SSSPA +VADTV
Sbjct: 134 SRLTAMAREGFDFNICIYEGISYLSRAQESASKFLSENPILADSVT-VSSSPA-TVADTV 191
Query: 197 FIERVRSRVKHWKNACTDSDIKT-EAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQL 255
F+ R+RSRVK+W+ +C DS KT + LV+SLR++VLG EQ+GSR +TIDVCSERQVQL
Sbjct: 192 FVGRIRSRVKNWRQSCIDSGSKTGDDDLVSSLRRLVLGSEQYGSRLCLTIDVCSERQVQL 251
Query: 256 VLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFR 315
+L+ML +FSD +VPL++ +K GTQAVR V SS EDKDL KREL+ E E+N+RVRGFR
Sbjct: 252 ILEMLTEFSDDVVPLLVASKSRGTQAVRTVFMSSKEDKDLFKRELKDLEKEENRRVRGFR 311
Query: 316 EVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKD 375
EV+D IS+SQKP+V+ N L+DFT IH+KFL PLP N+++F SL AFP V+D++ +K+
Sbjct: 312 EVVDFISSSQKPVVSQNYLSDFTSIHAKFLGPLPSNVDDFSSSLSSAFPNVVDLSQFMKE 371
Query: 376 IGPVKKMTNISATIAYLKNRFFAPIEMEIPNQA---NENEG-KIHGHNVVKICQLFGKLC 431
I P+ ++N+ A ++ L NRFFAP+++E+ NQ +EG + HG N V I QLF KLC
Sbjct: 372 ISPLSNISNLPAAMSSL-NRFFAPVDVEVANQGCPVKLDEGHQSHGQNAVMISQLFAKLC 430
Query: 432 SILKITPDAIESSDDFLASAINRYANIFYSLPGSSQEPTNEEIRGWTNDKRKVSCEDVVF 491
+I K I+S++DF A A + +AN S+ S+ +E ++ W+ + R+VS E++VF
Sbjct: 431 TIQKSDLSTIQSNEDFQALASDEHAN---SVTSCSKNAGDENVKVWSKNSRRVSSENLVF 487
Query: 492 LWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTF-KNVMNSKA 550
+WG ++++A LKN+LQ SH VFA F+V+ +DRS AI+VF + G S TF V N +
Sbjct: 488 IWGLGKKMTAAKLKNVLQKSHPVFAREFDVKYIDRSSAILVFWESGPSETFLSAVNNEEQ 547
Query: 551 VSGPLREMVSDGLKAAGYETYQRVCSSGLWESALADALDKTLASHNCLSEAAYETKQSEI 610
+ G LREMV++GL+ AGYETY+R C G WE+ LA++LDK L S + ++ +TK SEI
Sbjct: 548 LDGSLREMVAEGLRGAGYETYKRACRLGFWEADLAESLDKALESSD--TDPDSDTKPSEI 605
Query: 611 YLSNEL-INLAEL 622
SNEL IN EL
Sbjct: 606 DWSNELAINFDEL 618
>gi|356527283|ref|XP_003532241.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Glycine max]
Length = 619
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/602 (54%), Positives = 451/602 (74%), Gaps = 8/602 (1%)
Query: 27 WPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSP-WHRVSTFDTPETAYLKAK 85
W +KQ+T +NF ESL EIK HIS+SDF+A+S+ TGS S+P W R FDT +TAY KA+
Sbjct: 20 WRVKQVTTSNFQESLQEIKTHISNSDFVAISMGKTGSPSAPSWLRPLPFDTAQTAYSKAR 79
Query: 86 FAAERFQILQFAICPFKLQAS-KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
AA+RFQ+L FA+CPF + S K++A+PYNF LFPRDE+KMGMP+YSF+CQTS L +MA+
Sbjct: 80 RAAQRFQLLHFAVCPFSVSRSDKLLAHPYNFMLFPRDEMKMGMPTYSFSCQTSLLASMAR 139
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSR 204
+GFDFN C+Y+GISYLS AQES ++R+G + KSSS P+ +VADTVF+ER+RS+
Sbjct: 140 QGFDFNACVYNGISYLSRAQESAARIRLGTALPSLRVMKSSS-PS-TVADTVFVERIRSK 197
Query: 205 VKHWKNACTDSDIKT--EAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLED 262
VK+W+ +C SD + LV SLR IVLG EQF SRP MT+DVCSERQVQL+L+M+ D
Sbjct: 198 VKYWRESCKSSDTNKSRDEELVNSLRNIVLGNEQFRSRPCMTVDVCSERQVQLILEMVLD 257
Query: 263 FSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLIS 322
+SD L+PL IP K G AVR VL +S EDKDLL+REL+ E E++K++RGFREVIDLIS
Sbjct: 258 YSDDLLPLPIPTKSGTIHAVRIVLANSKEDKDLLERELRNLEEEESKKIRGFREVIDLIS 317
Query: 323 ASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM 382
ASQKP+++HN LND T IHSKF+APLPP ++EF+ SL FP+V+D+NYL+K G ++K+
Sbjct: 318 ASQKPVISHNCLNDCTLIHSKFIAPLPPEIDEFVSSLCSVFPEVLDINYLMKKHGTMRKV 377
Query: 383 TNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSILKITPDAIE 442
TNI + I+YL N FFAP+++EIP+QA EGKIHG +++ LF KLCSILKI+P+ E
Sbjct: 378 TNIPSAISYLNNHFFAPVDLEIPDQATVKEGKIHGLTALRLSYLFMKLCSILKISPNVTE 437
Query: 443 SSDDFLASAINRYANIFYSLPGSSQEPTN-EEIRGWTNDKRKVSCEDVVFLWGFRERISA 501
S + LA + + N+F+ Q+ N ++ WTN+ +KVSCE +VFLWGF+ I+A
Sbjct: 438 SGNKHLAPELEDFTNVFHPFSTPIQDSFNGGDVGMWTNNTKKVSCEHLVFLWGFKIGITA 497
Query: 502 GILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKAVSGPLREMVSD 561
G+LK++L+ SH++F+ F+V++VD+SCAIVVF + G+S F +++NS+ + G L+E+VSD
Sbjct: 498 GMLKSLLRSSHDIFSREFDVKLVDKSCAIVVFWQSGVSKRFLDILNSEEIRGDLKELVSD 557
Query: 562 GLKAAGYETYQRVCSSGLWESALADALDKTLASHNCLSEAAYETKQSEIYLSNE-LINLA 620
G++ YETY +C GLWE LA++L++ L S C E+ E K SEI+ N+ +INL
Sbjct: 558 GMRVTSYETYNTICRLGLWEMDLAESLERALESSCCDIESNCERKSSEIHWYNDNVINLD 617
Query: 621 EL 622
+L
Sbjct: 618 DL 619
>gi|9279724|dbj|BAB01314.1| unnamed protein product [Arabidopsis thaliana]
Length = 1115
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/600 (55%), Positives = 444/600 (74%), Gaps = 16/600 (2%)
Query: 17 TKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDT 76
TKT+ Q W +KQ+ K+NF+ +L EI+ I SSDFIA+SLQNTGS+++ WHRVS DT
Sbjct: 16 TKTLNQG--RWSVKQVKKSNFHVTLDEIRTSIDSSDFIALSLQNTGSYAAAWHRVSAIDT 73
Query: 77 PETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQT 136
P+T+YLKAK+AAER+QILQFA+CPF LQ SK+ +PYNFHLFPRDELK GMPSYSF+CQ
Sbjct: 74 PQTSYLKAKYAAERYQILQFALCPFSLQGSKLTVHPYNFHLFPRDELKCGMPSYSFSCQA 133
Query: 137 SYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTV 196
S LTAMA+EGFDFN CIY+GISYLS AQES K NP+ D T SSSPA +VADTV
Sbjct: 134 SRLTAMAREGFDFNICIYEGISYLSRAQESASKFLSENPILADSVT-VSSSPA-TVADTV 191
Query: 197 FIERVRSRVKHWKNACTDSDIKT-EAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQL 255
F+ R+RSRVK+W+ +C DS KT + LV+SLR++VLG EQ+GSR +TIDVCSERQVQL
Sbjct: 192 FVGRIRSRVKNWRQSCIDSGSKTGDDDLVSSLRRLVLGSEQYGSRLCLTIDVCSERQVQL 251
Query: 256 VLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFR 315
+L+ML +FSD +VPL++ +K GTQAVR V SS EDKDL KREL+ E E+N+RVRGFR
Sbjct: 252 ILEMLTEFSDDVVPLLVASKSRGTQAVRTVFMSSKEDKDLFKRELKDLEKEENRRVRGFR 311
Query: 316 EVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKD 375
EV+D IS+SQKP+V+ N L+DFT IH+KFL PLP N+++F SL AFP V+D++ +K+
Sbjct: 312 EVVDFISSSQKPVVSQNYLSDFTSIHAKFLGPLPSNVDDFSSSLSSAFPNVVDLSQFMKE 371
Query: 376 IGPVKKMTNISATIAYLKNRFFAPIEMEIPNQA---NENEG-KIHGHNVVKICQLFGKLC 431
I P+ ++N+ A ++ L NRFFAP+++E+ NQ +EG + HG N V I QLF KLC
Sbjct: 372 ISPLSNISNLPAAMSSL-NRFFAPVDVEVANQGCPVKLDEGHQSHGQNAVMISQLFAKLC 430
Query: 432 SILKITPDAIESSDDFLASAINRYANIFYSLPGSSQEPTNEEIRGWTNDKRKVSCEDVVF 491
+I K I+S++DF A A + +AN S+ S+ +E ++ W+ + R+VS E++VF
Sbjct: 431 TIQKSDLSTIQSNEDFQALASDEHAN---SVTSCSKNAGDENVKVWSKNSRRVSSENLVF 487
Query: 492 LWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTF-KNVMNSKA 550
+WG ++++A LKN+LQ SH VFA F+V+ +DRS AI+VF + G S TF V N +
Sbjct: 488 IWGLGKKMTAAKLKNVLQKSHPVFAREFDVKYIDRSSAILVFWESGPSETFLSAVNNEEQ 547
Query: 551 VSGPLREMVSDGLKAAGYETYQRVCSSGLWESALADALDKTLASHNCLSEAAYETKQSEI 610
+ G LREMV++GL+ AGYETY+R C G WE+ LA++LDK L S + ++ +TK SEI
Sbjct: 548 LDGSLREMVAEGLRGAGYETYKRACRLGFWEADLAESLDKALESSD--TDPDSDTKPSEI 605
>gi|449502106|ref|XP_004161545.1| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
PARN-like [Cucumis sativus]
Length = 610
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/616 (53%), Positives = 454/616 (73%), Gaps = 15/616 (2%)
Query: 1 MVPKFKPSPLRIRSFCTKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQN 60
M +F L R + T + W ++Q+ +NF SL ++KN IS SDFIA+SLQ
Sbjct: 1 MASRFSYFQLHRRLYTTTS------QWSVRQVRNSNFLGSLEDLKNDISDSDFIALSLQR 54
Query: 61 TGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPR 120
TGS S PWHR+ FDT +TAY KAK+AAE+FQI+QF++CPF ++ SK+IA+PYNFHLFPR
Sbjct: 55 TGSSSFPWHRLQPFDTHDTAYCKAKYAAEKFQIIQFSLCPFSVRDSKLIAHPYNFHLFPR 114
Query: 121 DELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDH 180
DEL +GMPSYSF+CQ S+LT+MA+EGFDF +YDGISYLS AQES K +MG+ +
Sbjct: 115 DELNIGMPSYSFSCQVSHLTSMAREGFDFGAWVYDGISYLSRAQESIAKTQMGSQTLPPN 174
Query: 181 ATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSR 240
S LSVADT+F++RV+SRVK+WK+A DS KT AL+++L+K+++G EQ+GSR
Sbjct: 175 INAVKPSSELSVADTIFVQRVKSRVKNWKDA-YDSSSKTSDALLSTLKKLIVGSEQYGSR 233
Query: 241 PSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKREL 300
PS+ IDV SERQV LVL++L++FSD LVP++I AKGGGTQAVRA+LTSS EDK LL++EL
Sbjct: 234 PSIVIDVYSERQVLLVLELLKEFSDDLVPVVISAKGGGTQAVRAILTSSKEDKILLEKEL 293
Query: 301 QTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLR 360
Q E ++NK+ RGFREVID+ISASQKP+V++NSL+DFTFIHSKFLAPLP +++E+ SL
Sbjct: 294 QYLEDKENKKFRGFREVIDVISASQKPIVSYNSLHDFTFIHSKFLAPLPTSIDEYASSLH 353
Query: 361 LAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNV 420
FP+V DV +L+ IG + K +I+A +YLKN ++AP ++IP +A N+ K HGHN
Sbjct: 354 SVFPRVHDVKHLMSKIGGLSKPMSIAAAYSYLKNXYYAPSYLDIPVEAPGNDHKPHGHNA 413
Query: 421 VKICQLFGKLCSILKITPDAIESSD-DFLASAINRYANIFYSLPGSSQEPTNEEIRGWTN 479
+++C LF ++CS+LKI ++S+D + LAS ++ +N+ S +P +E+++ W
Sbjct: 414 IRLCHLFAQVCSVLKIDLSGVQSNDNECLASMLDECSNV-SSFSPYHCKPKDEDVKIWAQ 472
Query: 480 DKRKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLS 539
RKVSC +VFLWG RE ++A +LK L+G+HEVF E F+VR VD+ CAIVVF +P LS
Sbjct: 473 GVRKVSCRHLVFLWGLREGLTARLLKASLEGTHEVFCEEFDVRFVDKKCAIVVFSQPDLS 532
Query: 540 NTFKNVMNSKAVSGPLREMVSDGLKAAGYETYQRVCSSGLWESALADALDKTLASHNCLS 599
TF + +NS + G LREMVS+GL+AAGYETY+++CS LWE+ LA++L++ +
Sbjct: 533 ETFLDAINSDNIVGSLREMVSEGLRAAGYETYKKICSFDLWEADLAESLERAIL------ 586
Query: 600 EAAYETKQSEIYLSNE 615
EA ET Q +I SN+
Sbjct: 587 EADPETAQLDINYSND 602
>gi|449462471|ref|XP_004148964.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Cucumis
sativus]
Length = 610
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/616 (53%), Positives = 454/616 (73%), Gaps = 15/616 (2%)
Query: 1 MVPKFKPSPLRIRSFCTKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQN 60
M +F L R + T + W ++Q+ +NF SL ++KN IS SDFIA+SLQ
Sbjct: 1 MASRFSYFQLHRRLYTTTS------QWSVRQVRNSNFLGSLEDLKNDISDSDFIALSLQR 54
Query: 61 TGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPR 120
TGS S PWHR+ FDT +TAY KAK+AAE+FQI+QF++CPF ++ SK+IA+PYNFHLFPR
Sbjct: 55 TGSSSFPWHRLQPFDTHDTAYCKAKYAAEKFQIIQFSLCPFSVRDSKLIAHPYNFHLFPR 114
Query: 121 DELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDH 180
DEL +GMPSYSF+CQ S+LT+MA+EGFDF +YDGISYLS AQES K +MG+ +
Sbjct: 115 DELNIGMPSYSFSCQVSHLTSMAREGFDFGAWVYDGISYLSRAQESIAKTQMGSQTLPPN 174
Query: 181 ATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSR 240
S LSVADT+F++RV+SRVK+WK+A DS KT AL+++L+K+++G EQ+GSR
Sbjct: 175 INAVKPSSELSVADTIFVQRVKSRVKNWKDA-YDSSSKTSDALLSTLKKLIVGSEQYGSR 233
Query: 241 PSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKREL 300
PS+ IDV SERQV LVL++L++FSD LVP++I AKGGGTQAVRA+LTSS EDK LL++EL
Sbjct: 234 PSIVIDVYSERQVLLVLELLKEFSDDLVPVVISAKGGGTQAVRAILTSSKEDKILLEKEL 293
Query: 301 QTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLR 360
Q E ++NK+ RGFREVID+ISASQKP+V++NSL+DFTFIHSKFLAPLP +++E+ SL
Sbjct: 294 QYLEDKENKKFRGFREVIDVISASQKPIVSYNSLHDFTFIHSKFLAPLPTSIDEYASSLH 353
Query: 361 LAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNV 420
FP+V DV +L+ IG + K +I+A +YLK +++AP ++IP +A N+ K HGHN
Sbjct: 354 SVFPRVHDVKHLMSKIGGLSKPMSIAAAYSYLKKQYYAPSYLDIPVEAPGNDHKPHGHNA 413
Query: 421 VKICQLFGKLCSILKITPDAIESSD-DFLASAINRYANIFYSLPGSSQEPTNEEIRGWTN 479
+++C LF ++CS+LKI ++S+D + LAS ++ +N+ S +P +E+++ W
Sbjct: 414 IRLCHLFAQVCSVLKIDLSGVQSNDNECLASMLDECSNV-SSFSPYHCKPKDEDVKIWAQ 472
Query: 480 DKRKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLS 539
RKVSC +VFLWG RE ++A +LK L+G+HEVF E F+VR VD+ CAIVVF +P LS
Sbjct: 473 GVRKVSCRHLVFLWGLREGLTARLLKASLEGTHEVFCEEFDVRFVDKKCAIVVFSQPDLS 532
Query: 540 NTFKNVMNSKAVSGPLREMVSDGLKAAGYETYQRVCSSGLWESALADALDKTLASHNCLS 599
TF + +NS + G LREMVS+GL+AAGYETY+++CS LWE+ LA++L++ +
Sbjct: 533 ETFLDAINSDNIVGSLREMVSEGLRAAGYETYKKICSFDLWEADLAESLERAIL------ 586
Query: 600 EAAYETKQSEIYLSNE 615
EA ET Q +I SN+
Sbjct: 587 EADPETAQLDINYSND 602
>gi|297831446|ref|XP_002883605.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297329445|gb|EFH59864.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1055
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/600 (55%), Positives = 441/600 (73%), Gaps = 26/600 (4%)
Query: 17 TKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDT 76
TKT+ Q W +KQ+ K+NF+ +L EI+ I SSDFIA+SLQNTGS+++ WHRVS DT
Sbjct: 16 TKTLNQG--RWSVKQVKKSNFHVTLDEIRTSIDSSDFIALSLQNTGSYAAAWHRVSAIDT 73
Query: 77 PETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQT 136
P+T+YLKAK+AAER+QILQFA+CPF L SK+ +PYNFHLFPRDELK GMPSYSF+CQ
Sbjct: 74 PQTSYLKAKYAAERYQILQFALCPFSLHGSKLTVHPYNFHLFPRDELKCGMPSYSFSCQA 133
Query: 137 SYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTV 196
S LTAMA+EGFDFNTCIY+GISYLS AQES K GNP+ DH T SSSPA +VADTV
Sbjct: 134 SRLTAMAREGFDFNTCIYEGISYLSRAQESASKFLSGNPILADHIT-VSSSPA-TVADTV 191
Query: 197 FIERVRSRVKHWKNACTDSDIKT-EAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQL 255
F+ R+RSRVK+W+ +C DS KT + LV+SLR++VLG EQ+GSR +TIDVCSERQVQL
Sbjct: 192 FVGRIRSRVKNWRQSCIDSGSKTGDDDLVSSLRRLVLGSEQYGSRLCLTIDVCSERQVQL 251
Query: 256 VLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFR 315
+L+ML +FSD +VPL++ +K GTQAVR V SS EDKDL KRELQ E E+N+RVRGFR
Sbjct: 252 ILEMLTEFSDDVVPLLVASKSRGTQAVRTVFMSSKEDKDLFKRELQDLEKEENRRVRGFR 311
Query: 316 EVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKD 375
EV+DLIS+SQKP+V+ N L+DFT IH+KFL PLP N+++F SL AFP V+D++ +K+
Sbjct: 312 EVVDLISSSQKPVVSQNYLSDFTSIHAKFLGPLPSNLDDFSSSLSSAFPNVVDLSQFMKE 371
Query: 376 IGPVKKMTNISATIAYLKNRFFAPIEMEIPNQA---NENEG-KIHGHNVVKICQLFGKLC 431
I P+ ++N+ A ++ L NRFF P+++E+ NQ NEG + HG N V I QLF KLC
Sbjct: 372 ISPLSNISNLPAAMSSL-NRFFVPVDVEVANQGCPVKLNEGHQSHGQNAVMISQLFAKLC 430
Query: 432 SILKITPDAIESSDDFLASAINRYANIFYSLPGSSQEPTNEEIRGWTNDKRKVSCEDVVF 491
+I K ++S++DF A A + +AN S ++ + N ++R ++
Sbjct: 431 TIQKSDQSTVQSNEDFQALASDEHANSVTSCSKNAGD-ENSKLR------------ELGV 477
Query: 492 LWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNS-KA 550
+WG ++++A LKN+LQ SH VFA+ F+V+ +DRSCAIVVF + G S TF +V+N+ +
Sbjct: 478 IWGLAKKMTAAKLKNVLQKSHPVFAQEFDVKYLDRSCAIVVFWESGPSETFLSVVNNEEQ 537
Query: 551 VSGPLREMVSDGLKAAGYETYQRVCSSGLWESALADALDKTLASHNCLSEAAYETKQSEI 610
+ G LREMV+ GL+A+GYETY+R C G WE+ LAD+LDK L S + ++ +TK SEI
Sbjct: 538 LDGSLREMVAQGLRASGYETYKRACRLGFWEADLADSLDKALESSD--TDPDSDTKPSEI 595
>gi|224129918|ref|XP_002320703.1| predicted protein [Populus trichocarpa]
gi|222861476|gb|EEE99018.1| predicted protein [Populus trichocarpa]
Length = 544
Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/600 (54%), Positives = 423/600 (70%), Gaps = 76/600 (12%)
Query: 8 SPLRIRSFCTKTVQQNPH----HWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGS 63
SPL R + +V + H W IKQ+TK+NF ++L +IK+H+S+SDF+AVSLQNTGS
Sbjct: 5 SPLLQRRLLSTSVTKTHHKPHQQWSIKQVTKSNFADTLKDIKSHVSNSDFVAVSLQNTGS 64
Query: 64 FSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPRDEL 123
FS+PW RVS FDT +TAYLKAK+AAERFQ+L FA+CP ++ASKV AYP
Sbjct: 65 FSAPWQRVSPFDTADTAYLKAKYAAERFQVLHFAVCPITVRASKVTAYP----------- 113
Query: 124 KMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATK 183
QEST K++MGNP+ + T+
Sbjct: 114 ---------------------------------------EQESTAKIQMGNPILAKNVTE 134
Query: 184 SSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEA-----ALVTSLRKIVLGGEQFG 238
S+S+ LSVAD+VF+ER++S +K+WK AC ++ + E ALV SLRK+VLG E++
Sbjct: 135 STST--LSVADSVFVERIKSHIKNWKKACKETSTRKEGNQIQDALVRSLRKLVLGNEEYD 192
Query: 239 SRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKR 298
SRP M IDVCSERQ QLV++ML++F+D +VPLIIPAKGG QAVR VLTSS EDKDLL+
Sbjct: 193 SRPCMNIDVCSERQAQLVVEMLQEFADDVVPLIIPAKGGAMQAVRVVLTSSKEDKDLLQG 252
Query: 299 ELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICS 358
+LQ E E K+VRGFREVIDLISASQKP+V+H SLN APLPP ++EF+CS
Sbjct: 253 KLQNDEQELKKKVRGFREVIDLISASQKPVVSHGSLN----------APLPPTVDEFMCS 302
Query: 359 LRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGH 418
LRLAFP VIDVN+L+K+I ++K+T+I I+ LKNRFF PI+MEIP QA ENE IHG
Sbjct: 303 LRLAFPLVIDVNHLMKEISALRKVTSIPVAISQLKNRFFTPIDMEIPCQAMENEDTIHGQ 362
Query: 419 NVVKICQLFGKLCSILKITPDAIESSDDFLASAINRYANIFYSLPGSSQEPTNEEIR--- 475
NVVKIC+LF +LCSILKI P A++S ++ ASA+ YANIF +S+EP + EI+
Sbjct: 363 NVVKICELFARLCSILKIDPAAVKSDEEKGASALEAYANIFSPFCTASEEPIDGEIKIWT 422
Query: 476 -GWTNDKRKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFG 534
WTN+ R VSCED+VFLWGF +R++AG+LK++LQ SHE F++ F+VR+VD SCAIV+F
Sbjct: 423 NKWTNNTRTVSCEDLVFLWGFGDRVTAGVLKSLLQESHEAFSKEFDVRLVDNSCAIVIFW 482
Query: 535 KPGLSNTFKNVMNSKA-VSGPLREMVSDGLKAAGYETYQRVCSSGLWESALADALDKTLA 593
+ GL+ TF N MN + + GPLREMVS+GL+AAGYETY R C GLWES+LAD+LD+ LA
Sbjct: 483 QHGLTETFLNTMNKCSDMRGPLREMVSEGLRAAGYETYNRACRLGLWESSLADSLDRALA 542
>gi|118487753|gb|ABK95700.1| unknown [Populus trichocarpa]
Length = 454
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 275/447 (61%), Positives = 351/447 (78%), Gaps = 12/447 (2%)
Query: 157 ISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSD 216
ISYLS QEST K++MGNP+ + T+S+S+ LSVAD+VF+ER++S +K+WK AC ++
Sbjct: 8 ISYLSREQESTAKIQMGNPILAKNVTESTST--LSVADSVFVERIKSHIKNWKKACKETS 65
Query: 217 IKTEA-----ALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLI 271
+ E ALV SLRK+VLG E++ SRP M IDVCSERQ QLV++ML++F+D +VPLI
Sbjct: 66 TRKEGNQIQDALVRSLRKLVLGNEEYDSRPCMNIDVCSERQAQLVVEMLQEFADDVVPLI 125
Query: 272 IPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAH 331
IPAKGG QAVR VLTSS EDKDLL+ +LQ E E K+VRGFREVIDLISASQKP+V+H
Sbjct: 126 IPAKGGAMQAVRVVLTSSKEDKDLLQGKLQNDEQELKKKVRGFREVIDLISASQKPVVSH 185
Query: 332 NSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAY 391
SLND T IHSKF+APLPP ++EF+CSLRLAFP VIDVN+L+K+I ++K+T+I I+
Sbjct: 186 GSLNDLTVIHSKFIAPLPPTVDEFMCSLRLAFPLVIDVNHLMKEISALRKVTSIPVAISQ 245
Query: 392 LKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSILKITPDAIESSDDFLASA 451
LKNRFF PI+MEIP QA ENE IHG NVVKIC+LF +LCSILKI P A++S ++ ASA
Sbjct: 246 LKNRFFTPIDMEIPCQAMENEDTIHGQNVVKICELFARLCSILKIDPAAVKSDEEKGASA 305
Query: 452 INRYANIFYSLPGSSQEPTNEEIR----GWTNDKRKVSCEDVVFLWGFRERISAGILKNM 507
+ YANIF +S+EP + EI+ WTN+ R VSCED+VFLWGF +R++AG+LK++
Sbjct: 306 LEAYANIFSPFCTASEEPIDGEIKIWTNKWTNNTRTVSCEDLVFLWGFGDRVTAGVLKSL 365
Query: 508 LQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKA-VSGPLREMVSDGLKAA 566
LQ SHE F++ F+VR+VD SCAIV+F + GL+ TF N MN + + GPLREMVS+GL+AA
Sbjct: 366 LQESHEAFSKEFDVRLVDNSCAIVIFWQHGLTETFLNTMNKCSDMRGPLREMVSEGLRAA 425
Query: 567 GYETYQRVCSSGLWESALADALDKTLA 593
GYETY R C GLWES+LAD+LD+ LA
Sbjct: 426 GYETYNRACRLGLWESSLADSLDRALA 452
>gi|222640635|gb|EEE68767.1| hypothetical protein OsJ_27469 [Oryza sativa Japonica Group]
Length = 601
Score = 566 bits (1460), Expect = e-159, Method: Compositional matrix adjust.
Identities = 271/562 (48%), Positives = 392/562 (69%), Gaps = 13/562 (2%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
Q+TK NF E++ ++ H+ + D++A++ Q TG+ + W R DTPETAYLKAK AAE
Sbjct: 15 QVTKRNFAEAVQDLAAHVEACDYVAIAAQRTGA-PTGWRRALPVDTPETAYLKAKLAAES 73
Query: 91 FQILQFAICPFKLQA---SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGF 147
FQ L FAICPF++ A S ++AYPYNFHLFPRDEL++GMP+YSF+CQ+SYL++MA GF
Sbjct: 74 FQPLHFAICPFRVDATSPSTLVAYPYNFHLFPRDELQLGMPAYSFSCQSSYLSSMAHSGF 133
Query: 148 DFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKH 207
DFN CIYDGISYLS AQES + R+ P H + SSSP+ S+AD+VF+ R++SR++H
Sbjct: 134 DFNMCIYDGISYLSRAQESLARERIFIP----HVRQLSSSPSTSIADSVFLTRIKSRIEH 189
Query: 208 WKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVL 267
W+ T + +LV +LR+++LG E +GSRPS +IDVCS+RQVQLVL+ SD L
Sbjct: 190 WRKGYTKPCKTADGSLVNTLRQLILGSESYGSRPSFSIDVCSDRQVQLVLEAANHISDDL 249
Query: 268 VPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKP 327
VPL++P K G +AVR + TSS EDK+LL +++ E E N + RGFREVIDL+S+SQKP
Sbjct: 250 VPLVVPDKAGTARAVRVIFTSSPEDKNLLLMDIKKMEDEHNLKFRGFREVIDLLSSSQKP 309
Query: 328 LVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISA 387
++++N LNDFT IHSKF+APLPPN++EF+CSLR+ F VID++++ ++IGP++K NI
Sbjct: 310 IISYNFLNDFTMIHSKFVAPLPPNLHEFMCSLRMVFSNVIDISHMWREIGPLRKAKNIQG 369
Query: 388 TIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSILKITPDAIESSDDF 447
++YL+ ++F P+++EIP Q N G NV++I +LF KL ++LKI+P+ S D
Sbjct: 370 ALSYLQRQYFVPMDVEIPQQDGNNSVTKSGENVLRITKLFAKLSNLLKISPNGQTHSGD- 428
Query: 448 LASAINRYANIFYSLPGSSQEPTNEEIRGWTNDKRKVSCEDVVFLWGFRERISAGILKNM 507
+ Y+ I Y +++E +++ +N R V ++VVFLWGFRE S L++
Sbjct: 429 KCHTVEEYSYILYP-SCTAEESEDDKSSNESNTTRSVRTDNVVFLWGFRE-TSVKELRSR 486
Query: 508 LQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKAVSGPLREMVSDGLKAAG 567
L H F++ F +R++D SC+ ++F + +NS++ S L S+GLKAAG
Sbjct: 487 LASLHHAFSKDFELRLLDNSCSALIFHSSDTAIDLLREINSESPS--LNNFFSEGLKAAG 544
Query: 568 YETYQRVCSSGLWESALADALD 589
++ Y++VC SGLW+S LA+ALD
Sbjct: 545 FDAYRKVCRSGLWDSDLAEALD 566
>gi|218201212|gb|EEC83639.1| hypothetical protein OsI_29373 [Oryza sativa Indica Group]
Length = 602
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 271/562 (48%), Positives = 391/562 (69%), Gaps = 13/562 (2%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
Q+TK NF E++ ++ H+ + D++A++ Q TG+ + W R DTPETAYLKAK AAE
Sbjct: 16 QVTKRNFAEAVQDLAAHVEACDYVAIAAQRTGA-PTGWRRALPVDTPETAYLKAKLAAES 74
Query: 91 FQILQFAICPFKLQA---SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGF 147
FQ L FAICPF++ A S ++AYPYNFHLFPRDEL++GMP+YSF+CQ+SYL++MA GF
Sbjct: 75 FQPLHFAICPFRVDATSPSTLVAYPYNFHLFPRDELQLGMPAYSFSCQSSYLSSMAHSGF 134
Query: 148 DFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKH 207
DFN CIYDGISYLS AQES + R+ P H + SSSP+ S+AD+VF+ R++SR++H
Sbjct: 135 DFNMCIYDGISYLSRAQESLARERIFIP----HVRQLSSSPSTSIADSVFLTRIKSRIEH 190
Query: 208 WKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVL 267
W+ T + +LV +LR++VLG E +GSRPS +IDVCS+RQVQLVL+ SD L
Sbjct: 191 WRKGYTKPCKTADGSLVNTLRQLVLGSESYGSRPSFSIDVCSDRQVQLVLEAANHISDDL 250
Query: 268 VPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKP 327
VPL++P K G +AVR + TSS EDK+LL +++ E E N + RGFREVIDL+S+SQKP
Sbjct: 251 VPLVVPDKAGTARAVRVIFTSSPEDKNLLLMDIKKMEDEHNLKFRGFREVIDLLSSSQKP 310
Query: 328 LVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISA 387
++++N LNDFT IHSKF+APLPPN++EF+CSLR+ F VID++++ ++IGP++K NI
Sbjct: 311 IISYNFLNDFTMIHSKFVAPLPPNLHEFMCSLRMVFSNVIDISHMWREIGPLRKAKNIQG 370
Query: 388 TIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSILKITPDAIESSDDF 447
++YL+ ++F P+++EIP Q N G NV++I +LF KL ++LKI+P+ D
Sbjct: 371 ALSYLQRQYFVPMDVEIPQQDGNNSVTKSGENVLRITKLFAKLSNLLKISPNGQTHPGD- 429
Query: 448 LASAINRYANIFYSLPGSSQEPTNEEIRGWTNDKRKVSCEDVVFLWGFRERISAGILKNM 507
+ Y+ I Y +++E +++ +N R V ++VVFLWGFRE S L++
Sbjct: 430 KCHTVEEYSYILYP-SCTAEESEDDKSSNESNTTRSVRTDNVVFLWGFRE-TSVKELRSR 487
Query: 508 LQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKAVSGPLREMVSDGLKAAG 567
L H F++ F +R++D SC+ ++F + +NS++ S L S+GLKAAG
Sbjct: 488 LASLHHAFSKDFELRLLDNSCSALIFHSSDAAIDLLREINSESPS--LNNFFSEGLKAAG 545
Query: 568 YETYQRVCSSGLWESALADALD 589
++ Y++VC SGLW+S LA+ALD
Sbjct: 546 FDAYRKVCRSGLWDSDLAEALD 567
>gi|357141478|ref|XP_003572239.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Brachypodium
distachyon]
Length = 596
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 278/593 (46%), Positives = 398/593 (67%), Gaps = 19/593 (3%)
Query: 30 KQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAE 89
KQ+TK NF E+L E+ H+ D++AV+ TG+ + W R DT ETAYLKAK AAE
Sbjct: 9 KQVTKRNFPEALQELAAHLKECDYVAVAALKTGA-PTGWRRALPVDTAETAYLKAKLAAE 67
Query: 90 RFQILQFAICPFKLQA---SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
FQ L A+CPF+ A S V+AYPYNFHLFPRDEL++GMPSYSF+CQTSY ++MA++G
Sbjct: 68 SFQPLHIAVCPFRFDATSHSTVVAYPYNFHLFPRDELQLGMPSYSFSCQTSYFSSMARDG 127
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN CIYDGISYLS QES + ++ P H + S SP+ +VAD+VF R++SR++
Sbjct: 128 FDFNMCIYDGISYLSRVQESLARQKIFIP----HLRQPSPSPSTTVADSVFTTRIKSRIQ 183
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 266
HW+ + + +LV SLRK++LGGE +GSRPSM+IDVCS+RQVQLVL+ + SD
Sbjct: 184 HWRKGYAEPSKTADGSLVNSLRKLILGGESYGSRPSMSIDVCSDRQVQLVLETINRVSDD 243
Query: 267 LVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQK 326
LVPL++P K G ++AVR + TSS+EDK+LL ++Q E E + + RGFREVIDL+S+SQK
Sbjct: 244 LVPLVVPDKAGMSRAVRVIFTSSEEDKNLLLMDIQKLEDEHSVKFRGFREVIDLLSSSQK 303
Query: 327 PLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNIS 386
P++++N LND T IH+KF+ PLPPNM+EF CSLR+ F V+DV +L ++IGP++ NI
Sbjct: 304 PIISYNCLNDLTMIHTKFIGPLPPNMHEFTCSLRMVFSSVVDVGHLWREIGPLRNAKNIQ 363
Query: 387 ATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSILKITPDAIESSDD 446
A ++YL+ ++F P+E+EIP Q N G NV++I +LF KL +LKI+P S +
Sbjct: 364 AALSYLQRQYFVPMEIEIPQQDGTNSVTKGGENVLRITKLFAKLSMLLKISPKHQSQSGE 423
Query: 447 FLASAINRYANIFYSLPGS-SQEPTNEEIRGWTNDKRKVSCEDVVFLWGFRERISAGILK 505
+ + NIFY PG + E + + + R VS + V+FLWGFR + SA L+
Sbjct: 424 -QHHTVEDFCNIFY--PGCMAGESDDVDCTKEPDITRTVSTDSVIFLWGFR-KTSAKELR 479
Query: 506 NMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKAVSGP-LREMVSDGLK 564
+L H VF+ F +R++D++C++++F S+T ++ + P L S+GLK
Sbjct: 480 YLLTRLHHVFSNDFELRLLDKTCSVLIFRS---SDTPMELLREISSESPSLNNFFSEGLK 536
Query: 565 AAGYETYQRVCSSGLWESALADALDKTLASHNCLSEAAYETKQSEIYLSNELI 617
AAG++ Y +VC GLW+S LA+AL+ + + + + T SEIY ++ L+
Sbjct: 537 AAGFDVYWKVCRLGLWDSDLAEALEAVSSEQATSALSGHGT--SEIYWNSSLM 587
>gi|242079291|ref|XP_002444414.1| hypothetical protein SORBIDRAFT_07g021600 [Sorghum bicolor]
gi|241940764|gb|EES13909.1| hypothetical protein SORBIDRAFT_07g021600 [Sorghum bicolor]
Length = 599
Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust.
Identities = 269/565 (47%), Positives = 394/565 (69%), Gaps = 17/565 (3%)
Query: 30 KQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAE 89
KQ+T+ NF E++ E++ H+ + D++AV+ Q TG+ + W R DT ETAYLKAK AAE
Sbjct: 12 KQVTRQNFAEAVRELRAHLEACDYVAVAAQKTGA-PTGWRRALPVDTAETAYLKAKLAAE 70
Query: 90 RFQILQFAICPFKLQASK---VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
FQ LQFA+CPF+L++S ++AYPYNFHLFPRDEL++GMPSYSF+CQ+SYL+ MA +G
Sbjct: 71 SFQPLQFAVCPFRLRSSSPSTLVAYPYNFHLFPRDELQLGMPSYSFSCQSSYLSTMANDG 130
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN CIYDGISYLS QES + ++ + SP+ SV+D+VF+ R++S++
Sbjct: 131 FDFNMCIYDGISYLSRVQESLARQKI----FTSRPQQLLPSPSTSVSDSVFVNRIKSKIL 186
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 266
HW+ D K + +LV+SL +++LGGE +GSRPSM+IDVCS+RQVQLVL+ + SD
Sbjct: 187 HWRKGYADPSKKDDGSLVSSLSRLILGGETYGSRPSMSIDVCSDRQVQLVLEAVNQISDD 246
Query: 267 LVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQK 326
LV L++P K G + VR + T+S EDK+LL ++Q E EQN + RGFREVIDL+S+SQK
Sbjct: 247 LVSLVVPHKAGAARFVRVIFTNSKEDKNLLLMDIQKLEDEQNFKFRGFREVIDLLSSSQK 306
Query: 327 PLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNIS 386
P++++N LND T +HSKF+APLPPNM+EF+CSL++ F V+D+++L + IGP++K NI
Sbjct: 307 PIISYNCLNDMTMLHSKFIAPLPPNMHEFLCSLKMVFSNVVDISHLWRQIGPLRKAKNIQ 366
Query: 387 ATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSILKITPDAIESSDD 446
A ++YL+ ++ PIE+EIP Q + + NV++I +LF KL ++LKI+P+ S +
Sbjct: 367 AALSYLQRQYCVPIEIEIPQQDGTSSVTKNEKNVLRITKLFAKLSNLLKISPECQLQSHE 426
Query: 447 FLASAINRYANIFYSLPGSSQEPTNEEIRGWTNDKRK-VSCEDVVFLWGFRERISAGILK 505
+A+ Y NIFY P E +++ +D + VS ++++FLWGFRE+ S LK
Sbjct: 427 -QCTAVEEYCNIFY--PSCVVEGSDDANFAIESDTTEIVSTDNIIFLWGFREK-SVKELK 482
Query: 506 NMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKAVSGP-LREMVSDGLK 564
L G H+ F+E F V+++D++C+ ++F SNT ++ GP L +S+GLK
Sbjct: 483 PYLIGLHQAFSEDFEVKLLDKTCSALIFRD---SNTATQLLKEINSEGPSLNRFLSEGLK 539
Query: 565 AAGYETYQRVCSSGLWESALADALD 589
AAG+E Y++VC GLW+S LA+ L+
Sbjct: 540 AAGFEVYRKVCRLGLWDSDLAEVLE 564
>gi|326501938|dbj|BAK06461.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 595
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 269/598 (44%), Positives = 396/598 (66%), Gaps = 20/598 (3%)
Query: 30 KQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAE 89
KQ+T+ NF E++ E+ H+ D++A++ TG+ + W R DT ETAYLKAKFA+E
Sbjct: 8 KQVTRRNFPEAVRELAAHVKECDYVAIAALKTGA-PTVWRRALPVDTAETAYLKAKFASE 66
Query: 90 RFQILQFAICPFKL---QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
FQ L A+CPF+L S V+AYP+NFHLFPRDEL++GMPSYSF+CQ+SY ++MA++G
Sbjct: 67 SFQPLHIAVCPFRLGSASGSDVVAYPHNFHLFPRDELQLGMPSYSFSCQSSYFSSMARDG 126
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN CIYDGISYLS QES + + P H + S S + SVAD+VF R++SR++
Sbjct: 127 FDFNMCIYDGISYLSRVQESLARQKTFTP----HLQQPSPSASTSVADSVFTNRIKSRIQ 182
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 266
+W+ C + + +LV+SLRK+++G E +GSRPSMTI VCS+RQVQLVL+ ++ SD
Sbjct: 183 NWRKGCAEPSKTADGSLVSSLRKLIMGSESYGSRPSMTILVCSDRQVQLVLETVKGTSDD 242
Query: 267 LVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQK 326
LV L++P K G +AVR + TSS EDK+LL +++ E EQ+ + RGFREVIDL+S+S+K
Sbjct: 243 LVTLVVPDKAGVPRAVRVIFTSSAEDKNLLLMDIRKLEDEQSSKFRGFREVIDLVSSSEK 302
Query: 327 PLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNIS 386
P++++N LND T IH++F+APLPPN++EF+CS RL F V+D+ +L ++I P++K NI
Sbjct: 303 PIISYNCLNDLTMIHAQFIAPLPPNLHEFMCSSRLVFSSVVDIGHLWREISPLRKAKNIQ 362
Query: 387 ATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSILKITPDAIESSDD 446
A ++YL+ + F P+E+EIP Q G NV++I +LF KL +LKITP S +
Sbjct: 363 AALSYLQRQHFVPMEIEIPLQDGTRGVTKSGENVLRITKLFAKLSKLLKITPKCQSQSGE 422
Query: 447 FLASAINRYANIFYSLPGSSQEPTNE-EIRGWTNDKRKVSCEDVVFLWGFRERISAGILK 505
+ + NI P E ++ + R VS + VVFLWGFRE SA L+
Sbjct: 423 -QHHTVEDHRNIL--CPSCMVEESDGVDCTNEPGTTRTVSTQSVVFLWGFRE-TSAEDLR 478
Query: 506 NMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKAVSGP-LREMVSDGLK 564
+ L H VF++ F++R++D++C+ ++F S+T ++ ++ P L S+GLK
Sbjct: 479 SRLTRLHHVFSKDFDLRLLDKTCSALIFRS---SDTASELLGDISLESPSLNNFFSEGLK 535
Query: 565 AAGYETYQRVCSSGLWESALADALDKTLASHNCLSEAAYETKQSEIYLSNEL-INLAE 621
AAG++ Y++ CS GLW+S LA+AL+ AS + + SEIY ++ L ++L E
Sbjct: 536 AAGFDVYRKACSLGLWDSDLAEALEG--ASLEPATSTVSDHGSSEIYWNSSLKLDLKE 591
>gi|359494766|ref|XP_003634836.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Vitis vinifera]
Length = 515
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 259/405 (63%), Positives = 320/405 (79%), Gaps = 5/405 (1%)
Query: 222 ALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQA 281
ALV SLRK++LG E++ SRP + +DVCSE QVQLVL++L +F D LVPL+IPAKGGGTQA
Sbjct: 112 ALVKSLRKLILGSEEYRSRPCVNLDVCSEHQVQLVLEVLGEFFDDLVPLLIPAKGGGTQA 171
Query: 282 VRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIH 341
VR +LTSS+EDKDLLKRELQ E EQNKRV GFREVIDLISASQKP+V+HNSLN+F FIH
Sbjct: 172 VRVILTSSEEDKDLLKRELQDLEEEQNKRVCGFREVIDLISASQKPVVSHNSLNEFAFIH 231
Query: 342 SKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAPIE 401
SKFL+PLPPNM+EF+CSLR+ FP V+DVN+L+K+IGP+KK+TN+SA + LK RFF PI+
Sbjct: 232 SKFLSPLPPNMDEFMCSLRMVFPHVLDVNHLMKEIGPLKKVTNLSAAASCLKRRFFVPID 291
Query: 402 MEIPNQANENEGKIHGHNVVKICQLFGKLCSILKITPDAIESSDDFLASAINRYANIFYS 461
MEIP+QA+ NE KIHGHNV+KI L LCSILKITP+ I+S LASA+ YANIF+
Sbjct: 292 MEIPHQAS-NEDKIHGHNVLKISHLLANLCSILKITPEMIQSDGGHLASALEGYANIFHP 350
Query: 462 LPGSSQEPTNEEIRGWTNDKRKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNV 521
++++P + I+ WT+D RKVS E +VF+WGFR R+SAG LK +LQGSH VF+E F+V
Sbjct: 351 HSTNTEDPIDGGIKVWTDDTRKVSSEGLVFIWGFRGRMSAGGLKRLLQGSHSVFSEEFDV 410
Query: 522 RMVDRSCAIVVFGKPGLSNTFKNVMNSKAVSGPLREMVSDGLKAAGYETYQRVCSSGLWE 581
RMVD SCAIVVF + GLS TF ++S +SG LREMVS+GL+AAGYETY+ C G WE
Sbjct: 411 RMVDGSCAIVVFWQSGLSQTFLEAISSNWISGLLREMVSEGLRAAGYETYKNACRLGFWE 470
Query: 582 SALADALDKTLASHNCLSEAAYETK---QSEIYLSNE-LINLAEL 622
+ LAD+LDK L + SEA E K S+IY S + +INL EL
Sbjct: 471 ADLADSLDKALEEPDHNSEADSEAKPTGPSQIYWSRDSIINLDEL 515
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/89 (62%), Positives = 76/89 (85%)
Query: 27 WPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKF 86
W +KQ+TK+NF+++L +K IS SDF+AVSLQ TGSFS+PWHRV FDTP+TAY KA+F
Sbjct: 14 WRVKQVTKSNFSQTLESLKPQISQSDFVAVSLQKTGSFSAPWHRVLPFDTPQTAYSKARF 73
Query: 87 AAERFQILQFAICPFKLQASKVIAYPYNF 115
AA++FQ+ QFA+CPF ++ASKV+A+P +F
Sbjct: 74 AADKFQVFQFAVCPFSVRASKVVAHPLSF 102
>gi|297742825|emb|CBI35579.3| unnamed protein product [Vitis vinifera]
Length = 6458
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 259/405 (63%), Positives = 320/405 (79%), Gaps = 5/405 (1%)
Query: 222 ALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQA 281
ALV SLRK++LG E++ SRP + +DVCSE QVQLVL++L +F D LVPL+IPAKGGGTQA
Sbjct: 6055 ALVKSLRKLILGSEEYRSRPCVNLDVCSEHQVQLVLEVLGEFFDDLVPLLIPAKGGGTQA 6114
Query: 282 VRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIH 341
VR +LTSS+EDKDLLKRELQ E EQNKRV GFREVIDLISASQKP+V+HNSLN+F FIH
Sbjct: 6115 VRVILTSSEEDKDLLKRELQDLEEEQNKRVCGFREVIDLISASQKPVVSHNSLNEFAFIH 6174
Query: 342 SKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAPIE 401
SKFL+PLPPNM+EF+CSLR+ FP V+DVN+L+K+IGP+KK+TN+SA + LK RFF PI+
Sbjct: 6175 SKFLSPLPPNMDEFMCSLRMVFPHVLDVNHLMKEIGPLKKVTNLSAAASCLKRRFFVPID 6234
Query: 402 MEIPNQANENEGKIHGHNVVKICQLFGKLCSILKITPDAIESSDDFLASAINRYANIFYS 461
MEIP+QA+ NE KIHGHNV+KI L LCSILKITP+ I+S LASA+ YANIF+
Sbjct: 6235 MEIPHQAS-NEDKIHGHNVLKISHLLANLCSILKITPEMIQSDGGHLASALEGYANIFHP 6293
Query: 462 LPGSSQEPTNEEIRGWTNDKRKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNV 521
++++P + I+ WT+D RKVS E +VF+WGFR R+SAG LK +LQGSH VF+E F+V
Sbjct: 6294 HSTNTEDPIDGGIKVWTDDTRKVSSEGLVFIWGFRGRMSAGGLKRLLQGSHSVFSEEFDV 6353
Query: 522 RMVDRSCAIVVFGKPGLSNTFKNVMNSKAVSGPLREMVSDGLKAAGYETYQRVCSSGLWE 581
RMVD SCAIVVF + GLS TF ++S +SG LREMVS+GL+AAGYETY+ C G WE
Sbjct: 6354 RMVDGSCAIVVFWQSGLSQTFLEAISSNWISGLLREMVSEGLRAAGYETYKNACRLGFWE 6413
Query: 582 SALADALDKTLASHNCLSEAAYETK---QSEIYLSNE-LINLAEL 622
+ LAD+LDK L + SEA E K S+IY S + +INL EL
Sbjct: 6414 ADLADSLDKALEEPDHNSEADSEAKPTGPSQIYWSRDSIINLDEL 6458
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 74/86 (86%)
Query: 27 WPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKF 86
W +KQ+TK+NF+++L +K IS SDF+AVSLQ TGSFS+PWHRV FDTP+TAY KA+F
Sbjct: 14 WRVKQVTKSNFSQTLESLKPQISQSDFVAVSLQKTGSFSAPWHRVLPFDTPQTAYSKARF 73
Query: 87 AAERFQILQFAICPFKLQASKVIAYP 112
AA++FQ+ QFA+CPF ++ASKV+A+P
Sbjct: 74 AADKFQVFQFAVCPFSVRASKVVAHP 99
>gi|357504877|ref|XP_003622727.1| Poly(A)-specific ribonuclease PARN-like protein [Medicago
truncatula]
gi|355497742|gb|AES78945.1| Poly(A)-specific ribonuclease PARN-like protein [Medicago
truncatula]
Length = 513
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 247/496 (49%), Positives = 340/496 (68%), Gaps = 32/496 (6%)
Query: 157 ISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSD 216
ISYLS AQES K+R+G KSSS P +VADTVFIER+RSR+KHW+N C +S
Sbjct: 20 ISYLSRAQESVAKIRLGTSSPSLGVMKSSSPP--TVADTVFIERIRSRIKHWRNTCKNSG 77
Query: 217 IKTEA-----------------------------ALVTSLRKIVLGGEQFGSRPSMTIDV 247
KT L+ S+R I+ G EQF RP + +DV
Sbjct: 78 TKTSKDGKKIFSKFCTMRFFLGSPFILYHSFCADELINSIRNIISGSEQFKLRPCLNVDV 137
Query: 248 CSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQ 307
CS+RQVQL+L+M+ DFSD L+PL+IP+KGG TQAVR VLT S EDK++L+REL++ E E+
Sbjct: 138 CSDRQVQLILQMVVDFSDDLLPLVIPSKGGTTQAVRVVLTKSREDKEVLERELRSLEEEE 197
Query: 308 NKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVI 367
+K++RGFREVIDLISASQKP+++HN LND T IHSKF+APLP ++EF+ SL FP+VI
Sbjct: 198 SKKIRGFREVIDLISASQKPVISHNCLNDCTLIHSKFIAPLPSEVDEFVSSLCKIFPKVI 257
Query: 368 DVNYLLKDIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLF 427
DVNYLLK G +KK+TNI ++Y+ F A +EMEIP+Q N+GKI G + +++ LF
Sbjct: 258 DVNYLLKKSGTMKKVTNIRNALSYMNTHFLALVEMEIPDQDTINKGKIDGLDALRLSYLF 317
Query: 428 GKLCSILKITPDAIESSDDFLASAINRYANIFYSLPGSSQEPT-NEEIRGWTNDKRKVSC 486
KLCS+LKI+P ES + LA + + N+F+S + QE + NE++ WTN+ RK +C
Sbjct: 318 MKLCSVLKISPVVTESGNRQLAPQLEDFTNVFHSCSANIQESSCNEDVSVWTNNTRKANC 377
Query: 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVM 546
E +VFLWGF+ ++AG+LK++L+ SH++F E F+V+ VD+SCA VVF +PGLS F NVM
Sbjct: 378 EHLVFLWGFKFGMTAGMLKSVLRESHDIFLEEFDVKFVDKSCAFVVFWEPGLSKDFLNVM 437
Query: 547 NSKAVSGPLREMVSDGLKAAGYETYQRVCSSGLWESALADALDKTLASHNCLSEAAYETK 606
N + +SG L+E+VSDGL+ GYETY+ +C GLWE LA++L+K+L ++ E K
Sbjct: 438 NDEQISGGLKELVSDGLRVTGYETYRTMCRLGLWEIDLAESLEKSLECSLNDTDIHSERK 497
Query: 607 QSEIYLSNELINLAEL 622
+ ++ +INL +L
Sbjct: 498 PEIPWCNDNVINLDDL 513
>gi|115476612|ref|NP_001061902.1| Os08g0440200 [Oryza sativa Japonica Group]
gi|113623871|dbj|BAF23816.1| Os08g0440200 [Oryza sativa Japonica Group]
Length = 291
Score = 316 bits (809), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 147/269 (54%), Positives = 198/269 (73%), Gaps = 8/269 (2%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
Q+TK NF E++ ++ H+ + D++A++ Q TG+ + W R DTPETAYLKAK AAE
Sbjct: 15 QVTKRNFAEAVQDLAAHVEACDYVAIAAQRTGA-PTGWRRALPVDTPETAYLKAKLAAES 73
Query: 91 FQILQFAICPFKLQA---SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGF 147
FQ L FAICPF++ A S ++AYPYNFHLFPRDEL++GMP+YSF+CQ+SYL++MA GF
Sbjct: 74 FQPLHFAICPFRVDATSPSTLVAYPYNFHLFPRDELQLGMPAYSFSCQSSYLSSMAHSGF 133
Query: 148 DFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKH 207
DFN CIYDGISYLS AQES + R+ P H + SSSP+ S+AD+VF+ R++SR++H
Sbjct: 134 DFNMCIYDGISYLSRAQESLARERIFIP----HVRQLSSSPSTSIADSVFLTRIKSRIEH 189
Query: 208 WKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVL 267
W+ T + +LV +LR+++LG E +GSRPS +IDVCS+RQVQLVL+ SD L
Sbjct: 190 WRKGYTKPCKTADGSLVNTLRQLILGSESYGSRPSFSIDVCSDRQVQLVLEAANHISDDL 249
Query: 268 VPLIIPAKGGGTQAVRAVLTSSDEDKDLL 296
VPL++P K G +AVR + TSS EDK+LL
Sbjct: 250 VPLVVPDKAGTARAVRVIFTSSPEDKNLL 278
>gi|449461041|ref|XP_004148252.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Cucumis
sativus]
gi|449524565|ref|XP_004169292.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Cucumis
sativus]
Length = 700
Score = 263 bits (671), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 181/612 (29%), Positives = 310/612 (50%), Gaps = 57/612 (9%)
Query: 27 WPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKF 86
+P+K +TK+NF +LSE+++H+ ++DF+A+ L+ TG S+PW + FD + YL K
Sbjct: 39 FPLKNVTKSNFEAALSELRSHVRAADFVAIDLEMTGITSAPWRDLLEFDRFDVRYLNVKD 98
Query: 87 AAERFQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
+AE+F +LQF ICPF+ ++K +A+P+NF +FPR E+++ PS F CQT+ + +AK
Sbjct: 99 SAEKFAVLQFGICPFRWDSAKNSFVAHPHNFFIFPRHEIEVDGPSSEFLCQTTSMEFLAK 158
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRM----GNPM--AVDHATKSSSSPALSVADTVFI 198
FDFN CIY+GISYLS A E + R+ G+ M A + T + + D +F
Sbjct: 159 YQFDFNACIYEGISYLSRAHEDAARKRLNFAYGDEMLDASSNVTNVMDKKRVGIPDVLFK 218
Query: 199 ERVRSRVKHWKNA-CTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLV- 256
ER+++R+ W++ ++ +++ + ++ K F RP++T+ + Q++L+
Sbjct: 219 ERMKNRLHEWRDRLLSERNMEFQGQEGSNDHKRQFQTIFFKMRPALTLSDFTSHQIKLIQ 278
Query: 257 LKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQN----KRVR 312
L + + F D+ ++ Q V V S +DK+LL +E+ + E N +
Sbjct: 279 LVIKKHFEDLCFVVVNDGNADLQQLV--VFVDSRDDKELLMQEVNRDQKEVNEMKIQSAI 336
Query: 313 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
GFR VIDL+S+ +K +V HN D IH KF+ LP EF+ SL FP ++D L
Sbjct: 337 GFRHVIDLLSSEKKLIVGHNCFLDMLHIHRKFIGSLPSTTEEFVSSLGKHFPYIMDTKIL 396
Query: 373 LKDIGPVKKMTNISAT------------IAYLKNRFFA-----PIEMEIPN--QANENEG 413
L + + N S T IA+ R A +E+++ + + N G
Sbjct: 397 LNGNNILIRRMNKSNTSLSSAFGLLCPHIAFSSQRVSAWNSGVQVEVQVDDLRSSKWNSG 456
Query: 414 KIH--GHNVVKICQLFGKLCSILKITPDAIESSDDFLASAI-NRYANIFYSLPGSSQ--- 467
H G++ +F + C ++ I +S++ L + I ++ N Y
Sbjct: 457 DTHEAGYDAFMTGCVFAQACDLMGIDFVDRSTSENLLGNEILQKHINRLYLSWARGDIID 516
Query: 468 -EPTNEEIRGWTNDKR--KVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEA--FNVR 522
N+ +T K KVS +++V +WGF ++A +K + + F + +V
Sbjct: 517 LSTGNQVTESFTTRKHRAKVSFQNIVLIWGFPTNLTARKIKACIS---KAFGQTNVSSVN 573
Query: 523 MVDRSCAIVVFGKPGLSNTFKNVM-------NSKAVSGPLREMVS-DGLKAAGYETYQRV 574
+D S V F KP + + F ++ + +V PL E+ AAGYE Y+++
Sbjct: 574 HLDESAVFVQFTKPEMVSEFLDLKEKLEKRDDPLSVLHPLTELFDVRTTHAAGYEAYKKI 633
Query: 575 CSSGLWESALAD 586
CSS + + +D
Sbjct: 634 CSSPMSKHLFSD 645
>gi|413922374|gb|AFW62306.1| hypothetical protein ZEAMMB73_533831 [Zea mays]
gi|413922375|gb|AFW62307.1| hypothetical protein ZEAMMB73_533831 [Zea mays]
Length = 244
Score = 263 bits (671), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/237 (51%), Positives = 170/237 (71%), Gaps = 8/237 (3%)
Query: 30 KQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAE 89
KQ+T+ NF E++ E++ H+ + D++AV+ Q TG+ + W R DT ETAYLKAK AAE
Sbjct: 12 KQVTRQNFAEAVLELRAHLEACDYVAVAAQKTGA-PTGWRRALPVDTAETAYLKAKLAAE 70
Query: 90 RFQILQFAICPFKLQ---ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
FQ LQ A+CPF+ + S ++AYPYNFHLFPRDEL++GMPSYSF+CQ YL+ +A +G
Sbjct: 71 SFQPLQIAVCPFRQRNSYPSTLVAYPYNFHLFPRDELQLGMPSYSFSCQPCYLSTIANDG 130
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN CIYDGISYLS QES + ++ P + SSP SVAD+VF+ R++SR+
Sbjct: 131 FDFNMCIYDGISYLSRVQESLAREKIFTP----RPHQLLSSPNTSVADSVFMNRIKSRIV 186
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDF 263
+W+ D K + +LV+SL +++LG E +GSRPSM+IDVCS+RQVQLVL+ + +
Sbjct: 187 NWRKRYADPSKKHDGSLVSSLSRLILGAETYGSRPSMSIDVCSDRQVQLVLEAVNPY 243
>gi|225461941|ref|XP_002266069.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Vitis vinifera]
Length = 734
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 192/621 (30%), Positives = 315/621 (50%), Gaps = 72/621 (11%)
Query: 27 WPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKF 86
+ +K +TK+NF SL++++ H+ +DF+A+ L+ TG S+PW FD + YLK K
Sbjct: 38 FALKNVTKSNFESSLADLRRHVRDADFVAIDLEMTGVTSAPWRESFEFDRFDVQYLKVKD 97
Query: 87 AAERFQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
+AE+F ++QF +CPF+ +S+ +A+P+NF++FPR EL + PSY F CQT+ + +AK
Sbjct: 98 SAEKFAVVQFGVCPFRWDSSRHCFVAHPHNFYVFPRQELPVDGPSYEFLCQTTSIDFLAK 157
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHAT-------KSSSSPALSVADTVF 197
FDFN CIY+GISYLS QE+ + +R N D + + +P +SVAD +F
Sbjct: 158 YQFDFNACIYEGISYLSREQENEM-LRCLNSECDDEMSLLWRNMKEVRDTPLVSVADVLF 216
Query: 198 IERVRSRVKHW-KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLV 256
ER+++R W K D ++ ++ K F RP++ ++ + Q++L+
Sbjct: 217 SERMKNRFNEWRKELLQDRKGGSQFLETSNDMKQQFQTIFFKMRPALILNGFTAHQLRLI 276
Query: 257 -LKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQT-FEFEQNKRVR-- 312
L + + F D++ I + G G+ + V SD DK+LL +E++ E +++
Sbjct: 277 QLVIKKHFKDLVY---IRSSGDGSYSELIVYIDSDNDKNLLMKEVKDGLRREAEMKIKTA 333
Query: 313 -GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNY 371
GFR VIDL+S+ QK +V HN L D I++KF PLP +F+ S+ FP +ID
Sbjct: 334 VGFRHVIDLLSSEQKLIVGHNCLLDIAHIYNKFFGPLPLTAEDFVSSIHKYFPYMIDTKI 393
Query: 372 LLKDIGPVKKM-----TNISATIAYL--------KNR--FFAP-IEMEIP----NQANEN 411
LL +K + T++S A L KN F P +E+E+ +N N
Sbjct: 394 LLNTNNVLKHLMKNGSTSLSKAFASLCPQIASSSKNSGLAFQPWVEVEVQVDDMRSSNWN 453
Query: 412 EGKIH--GHNVVKICQLFGKLCSILKITPDAIESSDDFLASA-INRYAN-IFYSLPGSS- 466
G H G++ +F + CS L I SS + + + ++ N +++S
Sbjct: 454 SGAKHEAGYDAFMTGCVFAQACSNLGIDFKKHSSSANLAHNKNLQKHVNHLYFSWVNGDI 513
Query: 467 -QEPTNEEIRGWT---NDKR---KVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAF 519
T I T N KR K+ ++V +WGF ++S+ ++ E ++AF
Sbjct: 514 IDLGTGNRIAATTVCYNLKRRYPKILFSNIVIVWGFPSQLSSKKIR-------ECISKAF 566
Query: 520 N------VRMVDRSCAIVVFGKPG-------LSNTFKNVMNSKAVSGPLREMVSDG-LKA 565
+ +D + V F KP L T + + + +V PL ++ G A
Sbjct: 567 GPISVTTIYHLDETAVFVQFSKPELVADFLVLKETLETIQDPISVLHPLSVLLEGGNTCA 626
Query: 566 AGYETYQRVCSSGLWESALAD 586
A YETY+ +CSS + + AD
Sbjct: 627 ASYETYKEICSSPISKVMFAD 647
>gi|296089929|emb|CBI39748.3| unnamed protein product [Vitis vinifera]
Length = 715
Score = 259 bits (663), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 192/621 (30%), Positives = 315/621 (50%), Gaps = 72/621 (11%)
Query: 27 WPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKF 86
+ +K +TK+NF SL++++ H+ +DF+A+ L+ TG S+PW FD + YLK K
Sbjct: 38 FALKNVTKSNFESSLADLRRHVRDADFVAIDLEMTGVTSAPWRESFEFDRFDVQYLKVKD 97
Query: 87 AAERFQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
+AE+F ++QF +CPF+ +S+ +A+P+NF++FPR EL + PSY F CQT+ + +AK
Sbjct: 98 SAEKFAVVQFGVCPFRWDSSRHCFVAHPHNFYVFPRQELPVDGPSYEFLCQTTSIDFLAK 157
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHAT-------KSSSSPALSVADTVF 197
FDFN CIY+GISYLS QE+ + +R N D + + +P +SVAD +F
Sbjct: 158 YQFDFNACIYEGISYLSREQENEM-LRCLNSECDDEMSLLWRNMKEVRDTPLVSVADVLF 216
Query: 198 IERVRSRVKHW-KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLV 256
ER+++R W K D ++ ++ K F RP++ ++ + Q++L+
Sbjct: 217 SERMKNRFNEWRKELLQDRKGGSQFLETSNDMKQQFQTIFFKMRPALILNGFTAHQLRLI 276
Query: 257 -LKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQT-FEFEQNKRVR-- 312
L + + F D++ I + G G+ + V SD DK+LL +E++ E +++
Sbjct: 277 QLVIKKHFKDLVY---IRSSGDGSYSELIVYIDSDNDKNLLMKEVKDGLRREAEMKIKTA 333
Query: 313 -GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNY 371
GFR VIDL+S+ QK +V HN L D I++KF PLP +F+ S+ FP +ID
Sbjct: 334 VGFRHVIDLLSSEQKLIVGHNCLLDIAHIYNKFFGPLPLTAEDFVSSIHKYFPYMIDTKI 393
Query: 372 LLKDIGPVKKM-----TNISATIAYL--------KNR--FFAP-IEMEIP----NQANEN 411
LL +K + T++S A L KN F P +E+E+ +N N
Sbjct: 394 LLNTNNVLKHLMKNGSTSLSKAFASLCPQIASSSKNSGLAFQPWVEVEVQVDDMRSSNWN 453
Query: 412 EGKIH--GHNVVKICQLFGKLCSILKITPDAIESSDDFLASA-INRYAN-IFYSLPGSS- 466
G H G++ +F + CS L I SS + + + ++ N +++S
Sbjct: 454 SGAKHEAGYDAFMTGCVFAQACSNLGIDFKKHSSSANLAHNKNLQKHVNHLYFSWVNGDI 513
Query: 467 -QEPTNEEIRGWT---NDKR---KVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAF 519
T I T N KR K+ ++V +WGF ++S+ ++ E ++AF
Sbjct: 514 IDLGTGNRIAATTVCYNLKRRYPKILFSNIVIVWGFPSQLSSKKIR-------ECISKAF 566
Query: 520 N------VRMVDRSCAIVVFGKPG-------LSNTFKNVMNSKAVSGPLREMVSDG-LKA 565
+ +D + V F KP L T + + + +V PL ++ G A
Sbjct: 567 GPISVTTIYHLDETAVFVQFSKPELVADFLVLKETLETIQDPISVLHPLSVLLEGGNTCA 626
Query: 566 AGYETYQRVCSSGLWESALAD 586
A YETY+ +CSS + + AD
Sbjct: 627 ASYETYKEICSSPISKVMFAD 647
>gi|224061228|ref|XP_002300380.1| predicted protein [Populus trichocarpa]
gi|222847638|gb|EEE85185.1| predicted protein [Populus trichocarpa]
Length = 675
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 170/617 (27%), Positives = 307/617 (49%), Gaps = 67/617 (10%)
Query: 27 WPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKF 86
+P+K +T++NF +++++K H+ ++DF+A+ L+ TG S+PW FD + YLK K
Sbjct: 25 FPLKHVTQSNFETAVADLKTHLKAADFVAIDLEMTGVTSAPWRESLEFDRFDVKYLKVKD 84
Query: 87 AAERFQILQFAICPFKLQASKV--IAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
+AE+F ++Q +CPF+ ++ IA+P+NF +FPR E+ + SY F CQT+ + +AK
Sbjct: 85 SAEKFAVVQLGVCPFRWDPLRLSFIAHPHNFFIFPRQEVPIDSSSYEFLCQTTSIDFLAK 144
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSR 204
FDFN CI G+SYLS QE + + + ++ P +S+ D +F ER+++R
Sbjct: 145 YHFDFNVCIRQGVSYLSRGQEDEALRLLNLRYENELSEQARDVPLVSITDILFSERMKNR 204
Query: 205 VKHWKNAC---TDSDIKTEAALVTSLRKIVLGGEQFGS-----RPSMTIDVCSERQVQLV 256
++ W++ T + E + + +QF + RP+++++ + RQ++L+
Sbjct: 205 LREWRDGLLKDTSGGSQLEGSFLND------SNQQFQNIFYKMRPALSLNGFTSRQLRLI 258
Query: 257 LKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRE-LQTFEFEQNKRVR--- 312
+ + L + + + +Q + V T S+ D+DLLK+E + + + +++
Sbjct: 259 QSVTKKHFKDLASVRVEGESSCSQQL-VVYTDSESDRDLLKKEVMDDYRRQAEMKIKAAI 317
Query: 313 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
GFR VIDL+S+ +K +V HN D IHSKFL PLP EF+ S+ FP +ID L
Sbjct: 318 GFRHVIDLLSSEKKLIVGHNCFLDLAHIHSKFLGPLPLEAEEFVYSVNKCFPYIIDTKIL 377
Query: 373 LKDIGPVKKMTNISAT------------IAYLKNR-----FFAPIEMEIP----NQANEN 411
L +K+ S T IA+ F + +++E+ ++
Sbjct: 378 LNTNNILKQRMKKSKTSLSSAFLSLCPQIAFASKESCNLTFSSSVKVEVQVDDIRSSSWI 437
Query: 412 EGKIH--GHNVVKICQLFGKLCSILKITPDAIESSDDFLASA-INRYANIFY-------S 461
G H G++ +F + C++L I S++ + + ++AN+ Y
Sbjct: 438 SGVKHEAGYDAFMTGCVFAQACNLLGIDFKLYSPSENLACNERLQKHANLLYLSWINGDI 497
Query: 462 LPGSSQEPTNEEIRGWTNDKRKVSC--EDVVFLWGFRERISAGILKNMLQGSHEVFA--E 517
+ S+ T E +R K + E++V +WGF ++ ++K+ + +VF
Sbjct: 498 IDLSTGHRTAESLRCRDLKKSQTGILFENIVLIWGFPSKLKTAVIKDRIS---KVFGPTS 554
Query: 518 AFNVRMVDRSCAIVVFGKPGL-------SNTFKNVMNSKAVSGPLREMVSDG-LKAAGYE 569
++ +D + V F K L T + ++ +V PL ++ G AA YE
Sbjct: 555 VTSICRLDETAVFVQFSKLKLVADFLVVKETLERSNDAFSVLHPLSTILEGGNTCAASYE 614
Query: 570 TYQRVCSSGLWESALAD 586
TY+ +CSS + AD
Sbjct: 615 TYKDICSSPTSKLLFAD 631
>gi|147799285|emb|CAN76999.1| hypothetical protein VITISV_007764 [Vitis vinifera]
Length = 720
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 186/608 (30%), Positives = 307/608 (50%), Gaps = 64/608 (10%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+K +TK+NF SL++++ H+ +DF+A+ L+ TG S+PW FD + YLK K +A
Sbjct: 40 LKNVTKSNFESSLADLRRHVRDADFVAIDLEMTGVTSAPWRESFEFDRFDVQYLKVKDSA 99
Query: 89 ERFQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
E+F ++QF +CPF+ +S+ +A+P+NF++FPR EL + PSY F CQT+ + +AK
Sbjct: 100 EKFAVVQFGVCPFRWDSSRHCFVAHPHNFYVFPRQELPVDGPSYEFLCQTTSIDFLAKYQ 159
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHAT-------KSSSSPALSVADTVFIE 199
FDFN CIY+G+SYLS QE+ + +R N D + + +P +SVAD +F E
Sbjct: 160 FDFNACIYEGVSYLSREQENEM-LRCLNSECDDEMSLLWRNMKEVRDTPLVSVADVLFSE 218
Query: 200 RVRSRVKHW-KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLV-L 257
R+++R W K D ++ ++ K F RP++ ++ + Q++L+ L
Sbjct: 219 RMKNRFNEWRKELLQDRKGGSQFLETSNDMKQQFQTIFFKMRPALILNGFTAHQLRLIQL 278
Query: 258 KMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQT-FEFEQNKRVR---G 313
+ + F D++ I + G G+ + V SD DK+LL +E++ E +++ G
Sbjct: 279 VIKKHFKDLVY---IRSSGDGSYSELIVYIDSDNDKNLLMKEVKDGLRREAEMKIKTAVG 335
Query: 314 FREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLL 373
FR VIDL+S+ QK +V HN L D I++KF PLP +F+ S+ FP +ID LL
Sbjct: 336 FRHVIDLLSSEQKLIVGHNCLLDIAHIYNKFFGPLPLTAEDFVSSIHKYFPYMIDTKILL 395
Query: 374 KDIGPVKKM-----TNISATIAYL--------KNR--FFAP-IEMEIP----NQANENEG 413
+K + T++S + L KN F P +E+E+ +N N G
Sbjct: 396 NTNNVLKHLMKNGSTSLSKAFSSLCPQIASSSKNSGLAFKPWVEVEVQVDDMRSSNWNSG 455
Query: 414 KIH--GHNVVKICQLFGKLCSILKITPDAIESSDDFLASA-INRYAN-IFYSLPGSS--Q 467
H G++ +F + CS L I SS + + + ++ N +++S
Sbjct: 456 AKHEAGYDAFMTGCVFAQACSNLGIDFKKHSSSANLAHNKNLQKHVNHLYFSWVNGDIID 515
Query: 468 EPTNEEIRGWT---NDKR---KVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNV 521
T I N KR K+ ++V +WGF ++S+ ++ + +VF +V
Sbjct: 516 LSTGNRIAATAVCYNLKRRYPKILFSNIVIVWGFPSQLSSKKIRECIS---KVFG-PISV 571
Query: 522 RMV---DRSCAIVVFGKPGLSNTFKNVMNSKAVSGPLREMVSDGLKAAGYETYQRVCSSG 578
M+ D + V F KP L F + S+ + L YETY+ +CSS
Sbjct: 572 TMIYHLDETAVFVQFSKPELVADFLFCIPSQYC------WKVETLVLPSYETYKEICSSP 625
Query: 579 LWESALAD 586
+ + AD
Sbjct: 626 ISKVMFAD 633
>gi|356569615|ref|XP_003552994.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Glycine max]
Length = 714
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 176/643 (27%), Positives = 299/643 (46%), Gaps = 62/643 (9%)
Query: 1 MVPKFKPSPLRIRSFC-----TKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIA 55
M P PSP R+F T Q +P K +T NF SL+E++ H+ +SDF+A
Sbjct: 1 MKPHKLPSPALSRAFARALGSATTATQCGVAFPSKTVTTANFEPSLAELRRHVRTSDFVA 60
Query: 56 VSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASK--VIAYPY 113
+ L+ TG S+PW + FD + YLK + +A +F ++QF +CPF+ S +AYP+
Sbjct: 61 IDLEMTGVTSAPWRELLEFDRSDVRYLKVRDSATKFAVVQFGVCPFRWDPSNHSFVAYPH 120
Query: 114 NFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMG 173
NF++FPR +L P F CQT+ + +AK FDFN CI++GISYLS QE +
Sbjct: 121 NFYVFPRQQLAGLGPCDEFLCQTTSMDFLAKYQFDFNACIHEGISYLSREQERKALRSLN 180
Query: 174 NPM-----AVDHATKSSSSPALSVADTVFIERVRSRVKHWKNAC-TDSDIKTEAALVTSL 227
+ + P LS AD +F R++++ W++ + + + + +++
Sbjct: 181 STYDSEWSDIGKLKDVRDIPLLSAADILFTARMKNKFSEWRDGLFQEQNQEDQIQGISND 240
Query: 228 RKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLT 287
K + F P++ ++ + Q++L+ ++ L + + ++ G+Q +
Sbjct: 241 SKFQVTF--FEMHPALRLNRFTSHQLKLIQLLIRKHFKDLSYVSVNSEASGSQQLVVYTD 298
Query: 288 SSDEDKDLLKRELQTFEFEQNKRVR---GFREVIDLISASQKPLVAHNSLNDFTFIHSKF 344
DE LLK+ + + +++ GFR VIDL+S+ QK +V +N D ++SKF
Sbjct: 299 LKDELNLLLKKVKEENHRAEEMKIQAAVGFRHVIDLLSSEQKLIVGYNCFLDIAHVYSKF 358
Query: 345 LAPLPPNMNEFICSLRLAFPQVIDVNYLLK-DIGPVKKMTNISATIAYLKNRFFAPI--- 400
+ PLP EF+ S+ FP ++D LL ++ +KM ++A F I
Sbjct: 359 IGPLPGTPEEFVASVSKCFPHIVDTKILLSTNLMFQEKMKRSRKSLASAFTSFCPQIAAG 418
Query: 401 ----------------EMEIPNQANENEGKIH--GHNVVKICQLFGKLCSILKITPDAIE 442
E++ + + G H G++ +F +LCS L I +
Sbjct: 419 SRSTDLGSLSHVKVNVEVDDSRSCSWSPGGKHEAGYDAFMTGCIFAQLCSDLGIDFKLHD 478
Query: 443 SSDDF-LASAINRYANIFYSL--------PGSSQEPTNEEIRGWTNDKRKVSCEDVVFLW 493
SS L + +Y N Y + + + +R T K+ E++V +W
Sbjct: 479 SSKPLALNEKLQKYVNRLYLSWMHRDIIDLNTGNKVADSSLRSLTKRYPKIMFENIVIIW 538
Query: 494 GFRERISAGILKNMLQGSHEVFA--EAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKAV 551
GF ++ A ++ + +VF +V +D + A V F K L + F V +S
Sbjct: 539 GFSSKLKANEIRECIS---KVFGPTSVVSVFHLDATAAFVQFSKTELVSDFLLVKDSLER 595
Query: 552 SG-------PLREMVSDG-LKAAGYETYQRVCSSGLWESALAD 586
SG PL +++ G A Y+TY+ +C S L E AD
Sbjct: 596 SGGAISVLHPLSKLLEGGNTCGANYDTYREICGSSLSEGLFAD 638
>gi|240254280|ref|NP_175983.5| Poly(A)-specific ribonuclease PARN [Arabidopsis thaliana]
gi|60390594|sp|Q9LG26.2|PARN_ARATH RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Polyadenylate-specific ribonuclease; Short=AtPARN;
AltName: Full=Protein ABA hypersensitive germination 2
gi|65736526|dbj|BAD98514.1| poly(A)-specific ribonuclease [Arabidopsis thaliana]
gi|332195190|gb|AEE33311.1| Poly(A)-specific ribonuclease PARN [Arabidopsis thaliana]
Length = 689
Score = 231 bits (589), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 173/653 (26%), Positives = 321/653 (49%), Gaps = 75/653 (11%)
Query: 27 WPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKF 86
+P+K +T++NF +L+++++ + ++DF+A+ L+ TG S+PW FD + YLK K
Sbjct: 36 FPLKHVTRSNFETTLNDLRSLVKAADFVAIDLEMTGVTSAPWRDSLEFDRYDVRYLKVKD 95
Query: 87 AAERFQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
+AE+F ++QF +CPF+ + ++YP+NF +FPR EL P++ F CQT+ + +AK
Sbjct: 96 SAEKFAVVQFGVCPFRWDSRTQSFVSYPHNFFVFPRQELTFDPPAHEFLCQTTSMDFLAK 155
Query: 145 EGFDFNTCIYDGISYLS--EAQESTVKVRM-GNPMAVDHATKSSSSPALSVADTVFIERV 201
FDFNTCI++GISYLS E +E++ +++M +D + ++ + +AD +F R+
Sbjct: 156 YQFDFNTCIHEGISYLSRREEEEASKRLKMLHGEDGIDSSGETEELKLVRLADVLFAARM 215
Query: 202 RSRVKHWKNACTD-SDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKML 260
+ W++ + +E +++ + RP++++ + Q++++ +L
Sbjct: 216 EKLLNEWRSGLLHGGNASSEFPRISNGSNQSMETVFHHMRPALSLKGFTSHQLRVLNSVL 275
Query: 261 EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR-------- 312
LV + K ++ + V T SD DK+ L +E + ++ KR+
Sbjct: 276 RKHFGDLVYIHSNDKSSSSRDI-VVYTDSDSDKENLMKEAK----DERKRLAERKIQSAI 330
Query: 313 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
GFR+VIDL+++ +K +V HN D ++SKF+ PLP +F+ S+ FP ++D L
Sbjct: 331 GFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINSHFPYIVDTKIL 390
Query: 373 LKDIGPV--KKMTNIS-------------------ATIAYLKNRFFAPIEMEIPNQANEN 411
L ++ P+ ++M S ++ ++L+ R +E++ +N N
Sbjct: 391 L-NVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEIDNVRCSNWN 449
Query: 412 EGKIH--GHNVVKICQLFGKLCSILKITPDAIESSDDFLAS-AINRYANIFYSLPGSSQE 468
G H G++ +F + C+ L DDF + + +Y N Y L + +
Sbjct: 450 AGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDDFAQNEKLEKYINRLY-LSWTRGD 508
Query: 469 PTNEEIRGWTNDKRKVS---CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAF------ 519
+ D +VS E++V +W F ++ A +G E +AF
Sbjct: 509 IIDLRTGHSNADNWRVSKFKYENIVLIWNFPRKLKA-------RGIKECICKAFGSASVT 561
Query: 520 NVRMVDRSCAIVVFGKPGLSNTF---KNVMNSK----AVSGPLREMVSDG-LKAAGYETY 571
+V VD S V+F L F K + S +V PL +++ G AA YE Y
Sbjct: 562 SVYHVDDSAVFVLFKNSELVWDFLALKRQLESSDGPVSVLHPLSKILEGGNTGAADYEAY 621
Query: 572 QRVCSSGLWESALADALD------KTLASHNCLSEAAYETKQSEIYLSNELIN 618
+ +CSS + E +D + +T + C +E E + + +++LI+
Sbjct: 622 KEICSSHVSEVMFSDQAETVGVKSRTRPNAQCETETREENTVTVTHKASDLID 674
>gi|168026131|ref|XP_001765586.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683224|gb|EDQ69636.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 487
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 135/364 (37%), Positives = 202/364 (55%), Gaps = 37/364 (10%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+ +T+ NF ESL +++ ++ +DF+AV L+ TG S+ W R D+ ET Y K +A
Sbjct: 7 MANVTRRNFVESLEQLRGQLAGADFVAVDLEMTGVESTKWRRNLELDSYETRYQNLKHSA 66
Query: 89 ERFQILQFAICPFKLQAS--KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
E+F + Q +CPFK + K +AYPYNF +FPR+EL++ +P+ SF QT+ L + K
Sbjct: 67 EKFAVWQCGVCPFKWDEAHNKWVAYPYNFFIFPRNELQLELPARSFFAQTTSLEFLTKHR 126
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGN-------PMAVDHATKSSSSPALSVADTVFIE 199
FDFN CIYDGISYLS QE+ +V MG+ P V + SS P D F+E
Sbjct: 127 FDFNACIYDGISYLSHEQEAVARVLMGSVSVKQNFPSGVHN---SSEIPLTKPGDVAFVE 183
Query: 200 RVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM 259
++R+++ W++ L+ + +K + E RPS+ IDV S Q +LV ++
Sbjct: 184 KIRTQIGRWRD-----------ELLFNRQKWQVVNENL--RPSLNIDVTSHYQSRLVQQI 230
Query: 260 LE-DFSDVLVPLIIPAKGGGTQ---AVRAVLTSSDED-----KDLLKRELQTFEFEQNKR 310
++ F D++ + A+G G +R + S ED ++L E E +
Sbjct: 231 IKTHFPDLVAA--VNARGNGPHDRIRIRVIYVSPKEDMSKVIQELADEERNALETRVSNA 288
Query: 311 VRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVN 370
V GFR+V+D I+ + P+V HN + D T I+SKF+ PLP EF SLR FP VID
Sbjct: 289 V-GFRKVLDAIAEAGLPVVGHNCILDMTHIYSKFVGPLPATSAEFSSSLRQQFPCVIDTK 347
Query: 371 YLLK 374
YLL+
Sbjct: 348 YLLR 351
>gi|302772366|ref|XP_002969601.1| hypothetical protein SELMODRAFT_410403 [Selaginella moellendorffii]
gi|300163077|gb|EFJ29689.1| hypothetical protein SELMODRAFT_410403 [Selaginella moellendorffii]
Length = 648
Score = 229 bits (583), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 187/637 (29%), Positives = 300/637 (47%), Gaps = 77/637 (12%)
Query: 12 IRSFCTKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRV 71
IR FC+ V+ + H IT+ NF + +K + +DF+A+ L+ +G S+PW +
Sbjct: 18 IRFFCSAVVRDSSH-----AITRQNFGAAFQRLKGLLRDADFVAMDLEMSGVHSAPWRKS 72
Query: 72 STFDTPETAYLKAKFAAERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPS 129
DT ET Y + +AE+F +LQ +C F+ +SK + +P+NF LFPR+EL +
Sbjct: 73 MELDTLETRYHNVRDSAEKFSLLQCGLCLFRYDQASSKFLGHPFNFFLFPRNELVL---E 129
Query: 130 YSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPA 189
F CQTS L +AK FDFN CIY+GISYLS +E ++ + P
Sbjct: 130 RDFLCQTSSLEFLAKHHFDFNACIYNGISYLSRKEEGKLRALLAKK-------GEDELPE 182
Query: 190 LSV---ADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTID 246
+S+ +D +F ERVR +V W+ + + K + +S R + E PS+ I+
Sbjct: 183 VSMRKTSDLIFSERVRLQVGLWRASKIMAKHKAKQE-ESSGRSSMPDDE--APLPSLVIN 239
Query: 247 VCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDK-----DLLKRELQ 301
V +RQ +LVLK + D LVP+I + TQ V+ + T S E K DL K +L
Sbjct: 240 VSDKRQAKLVLKAVSSNFDDLVPMIEGNEKEATQ-VKVIYTGSSEHKIALQADLDKAKLD 298
Query: 302 TFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRL 361
E++ + V GFR+VID IS S+KP+V HN + D I++KF+ PLP N + F +
Sbjct: 299 LMEYDVMEAV-GFRQVIDAISESKKPIVGHNCVLDLAHIYNKFIGPLPDNYSGFCNVIHE 357
Query: 362 AFPQVIDVNYLLKDIGPVKKMTNISATIAYL---------KNRFFAPIEMEIPN---QAN 409
FP VID Y+LK + T++ +Y K + + + +EI + + +
Sbjct: 358 LFPAVIDTKYMLKVLRTSISTTSLYPVYSYYFGEDAKKNTKMKAHSTVNVEIADGFHKYS 417
Query: 410 ENEGKIH-GHNVVKICQLFGKLCSILKITPDAIES-SDDFL--ASAINRYANIFY----- 460
+ E K G + +F +L + P + S L AI+ ++N+ Y
Sbjct: 418 DAELKHEAGFDAYMTGAIFAQLWRTVVSNPTEFYALSKKILRGTHAISEFSNLLYMGWAG 477
Query: 461 ----------SLPGSSQEPTNEEIRGWTNDKRKVSCEDVVFLWGFRERISAGILKNMLQG 510
GS P E + R+ + + V +W S+ L+ +++
Sbjct: 478 HFVLDLKTGKEAKGSKALPERE-----SYSARRPASDAAVIVWSQDPVGSSRQLQKLVKS 532
Query: 511 SHE--VFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVM-----NSKAVSGPLREMVSDGL 563
E F+ V V + A + F S F + N K ++ + S GL
Sbjct: 533 CFEETQFSSEVEVIPVSENAAFLAFKSLRSSEEFSQALESIKTNRKKLNTIAARLSSSGL 592
Query: 564 KAAGYETYQRVCSSGLWESALADALDKTLASHNCLSE 600
+ A + T++++C S L + DA+ S NC S+
Sbjct: 593 QGARFGTFEKLCKSELSTFNIGDAIQ----SINCFSD 625
>gi|356524370|ref|XP_003530802.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Glycine max]
Length = 718
Score = 228 bits (582), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 179/657 (27%), Positives = 301/657 (45%), Gaps = 80/657 (12%)
Query: 1 MVPKFKPSP------LRIRSFCTKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFI 54
M P PSP R S T T P +P K +T NF SL+E+++H+ SDF+
Sbjct: 1 MKPHKLPSPSLSRALARALSSATITTHCGPA-FPSKTVTTANFEPSLAELRHHVRCSDFV 59
Query: 55 AVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASK--VIAYP 112
A+ L+ TG S+PW FD + YLK + +A +F ++QF +CPF+ S +A+P
Sbjct: 60 AIDLEMTGVTSAPWRESLAFDRSDVRYLKVRDSAAKFAVVQFGVCPFRWDPSNHSFVAHP 119
Query: 113 YNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRM 172
+NF++FPR E+ P F CQT+ + +AK FDFN CI++GISYLS QE +
Sbjct: 120 HNFYVFPRQEIAGLGPCDEFLCQTTSMDFLAKYQFDFNACIHEGISYLSREQEREALRSL 179
Query: 173 GNPM------AVDHATKSSSSPALSVADTVFIERVRSRVKHWKNAC---TDSDIKTEAAL 223
+ + P LS AD +F R++++ W++ + + + +
Sbjct: 180 NSTYDSSEWSDIGKLKNVRDIPLLSTADILFTARMKNKFGEWRDGLFQEQNQEDQIQGIS 239
Query: 224 VTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVR 283
S ++ F P++ ++ + Q++L+ ++ L + + ++ G+Q +
Sbjct: 240 KDSKFQVTF----FEMHPALRLNGFTSHQLKLIQLVIRKHFKDLSYVSVNSETSGSQQLV 295
Query: 284 AVLTSSDEDKDLLKRELQTFEFEQNKRVR---GFREVIDLISASQKPLVAHNSLNDFTFI 340
S DE LLK+ + + K+++ GFR VIDL+S+ QK +V +N D +
Sbjct: 296 VYTDSKDELNLLLKKVKEENHRAEEKKIQAAVGFRHVIDLLSSEQKLIVGYNCFLDIAHV 355
Query: 341 HSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLK-DIGPVKKMTNISATIAYLKNRFFAP 399
+SKF+ PLP + +EF+ S+ FP ++D LL ++ +KM ++A F P
Sbjct: 356 YSKFIGPLPGSPDEFVASVNKCFPHIVDTIILLNTNLMFQEKMKRSRKSLASAFT-LFCP 414
Query: 400 --------------------IEMEIPNQANENEGKIH--GHNVVKICQLFGKLCSILKIT 437
+E++ + N G H G++ +F +LCS L I
Sbjct: 415 QIAAGSRSTDLGSLSHVKVDVEVDGSRSCSWNPGGKHEAGYDAFMTGCIFAQLCSDLGID 474
Query: 438 PDAIESSDDF-LASAINRYANIFY---------SLPGSSQEPTNEEIRGWTNDKRKVSCE 487
+SS+ L + +Y N Y L ++ + + E
Sbjct: 475 FKLRDSSNQLALNEKLQKYVNRLYLSWIHGDIIDLNTGNKVADSSPSHSLKKRYPTILFE 534
Query: 488 DVVFLWGFRERISAGILKNMLQGSHEVFAEAF------NVRMVDRSCAIVVFGKPGLSNT 541
++V +WGF ++ A ++ E ++AF +V +D + A V F K L +
Sbjct: 535 NIVIIWGFPSKLKANEVR-------ECISKAFGPTSVVSVFHLDATAAFVQFSKTELVSD 587
Query: 542 FKNVMNSK-------AVSGPLREMVSDG-LKAAGYETYQRVCSSGLWESALADALDK 590
F V +S +V PL +++ G AA Y+TY +C S L E AD K
Sbjct: 588 FLLVKDSLERSDGAISVLHPLSKLLEGGNTCAANYDTYNEICGSPLSEGLFADQAKK 644
>gi|242076112|ref|XP_002447992.1| hypothetical protein SORBIDRAFT_06g019420 [Sorghum bicolor]
gi|241939175|gb|EES12320.1| hypothetical protein SORBIDRAFT_06g019420 [Sorghum bicolor]
Length = 719
Score = 228 bits (582), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 173/626 (27%), Positives = 300/626 (47%), Gaps = 75/626 (11%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+KQ+T+ N E+L +++ + + F+ V L+ +G S+PW FD + YLK + +A
Sbjct: 45 VKQVTRGNMAEALEKLRGRVREAAFVGVDLEMSGVTSAPWRDTFEFDRADVRYLKLRDSA 104
Query: 89 ERFQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
ERF LQ +CPF+ +K +A+P+NF +FPR EL S+ F CQT+ + +AK
Sbjct: 105 ERFAALQLGVCPFRWDPAKSAFVAHPHNFFIFPRKELPSDCSSHEFLCQTTSIDFLAKYQ 164
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSS------PALSVADTVFIER 200
FDFNTC +GISYLS AQE + AT S++S P S +D +F ER
Sbjct: 165 FDFNTCFREGISYLSRAQEEEALQKFNTLHHGQTATSSTNSEEDGDIPLKSASDILFTER 224
Query: 201 VRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGS-----RPSMTIDVCSERQVQL 255
++ K W++ + V I G QF + RP++ ++ S Q++L
Sbjct: 225 MKMNFKEWRDVIVSKPMVDNHLSVN----IKCGAGQFQTVFFKMRPAIMLNGFSSHQLKL 280
Query: 256 VLKML-EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFE-QNKRVR- 312
+ ++L ++F D++ + T + V + +DED+ LL +++Q + + + +RV+
Sbjct: 281 IQQVLRKNFRDLV--FVCTFGEDDTSEKKVVYSDTDEDRMLLMKDVQEDQLKNREERVKS 338
Query: 313 --GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVN 370
G R VIDL+S+ +K ++ H+ D ++SKF+ PLP ++ EF S FP + D
Sbjct: 339 AIGIRHVIDLLSSERKLIIGHSCFLDIAQVYSKFVGPLPSSIKEFALSFHKIFPHIADTR 398
Query: 371 YLLKDIGPVKKMT-----NISATIAYL---------KNRFFAPIEMEIPNQANEN----E 412
+LL V+++ ++S+ + L K +P+ +E+ +
Sbjct: 399 HLLSVNQAVQELMKQKSKSLSSAFSLLCPASYSSAEKASSHSPVTIEVEGDETTSSSFIS 458
Query: 413 GKIH--GHNVVKICQLFGKLCSILKITPDAIESSDD------------FLASAINRYANI 458
G H G++ +F +LC+ L I + DD FL+ + N I
Sbjct: 459 GAKHEAGYDAYMTGCIFAQLCAYLGIKFEQFSPLDDLATNTRLQKHINFLSPSWNSGTVI 518
Query: 459 FYSLPGSSQEPTNEEIRGWTNDKRKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEA 518
S +P G+ +++V +WGF ++ +K+ + +VF
Sbjct: 519 DLSTGMERPDP------GYMRRYPAAVYDNIVVIWGFMSKVRPKEIKDCI---CKVFGSG 569
Query: 519 --FNVRMVDRSCAIVVFGKPGLSNTFKNVMNS--KAVSG-----PLREMVSDG-LKAAGY 568
V +D + A+V F K N F ++ ++ +A S PL ++ G +AA Y
Sbjct: 570 SVTTVFSIDSTAALVQFKKQESVNDFLDLKSALERADSAVLILHPLSTILEGGQTRAAKY 629
Query: 569 ETYQRVCSSGLWESALADALDKTLAS 594
+TY+ +CSS +S AD + A+
Sbjct: 630 DTYRDICSSSESKSLFADQAEAVCAT 655
>gi|255563538|ref|XP_002522771.1| conserved hypothetical protein [Ricinus communis]
gi|223538009|gb|EEF39622.1| conserved hypothetical protein [Ricinus communis]
Length = 699
Score = 228 bits (581), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 171/615 (27%), Positives = 293/615 (47%), Gaps = 82/615 (13%)
Query: 27 WPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKF 86
+P+K + K+NFN SL+++K H+ ++DFIA+ L+ TG ++PW +D + YLK K
Sbjct: 30 FPLKHVVKSNFNSSLADLKRHVIAADFIAIDLEMTGITTAPWRESFEYDRFDVRYLKVKD 89
Query: 87 AAERFQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
+AE+F ++QF +CPF+ + IA+PYNF +F D F CQ + L +AK
Sbjct: 90 SAEKFAVVQFGVCPFRWDSDHHSFIAHPYNFFIFRED--------CEFLCQATSLEFLAK 141
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSR 204
FDFNTCI +G+SYLS QE R+ + P S+ D +F ER+++R
Sbjct: 142 YQFDFNTCILEGMSYLSRRQEEEALRRLNLRYEDSNLNDVGDVPLASITDILFSERMKNR 201
Query: 205 VKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLV-LKMLEDF 263
+ W+ D +K + S + + + RP++ + + Q++L+ L + F
Sbjct: 202 LSEWR----DGLLKNGNGIGDSQFQTIF----YKMRPALCLSGFTSHQLKLIQLVTRKHF 253
Query: 264 SDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR-----GFREVI 318
+ + + + Q + V S+ DKDLL +E++ E+ + ++ GFR VI
Sbjct: 254 EN--LAYVGCGQSSSLQEL-VVYIDSENDKDLLMKEVKD-EYRKGAEMKIKNAIGFRHVI 309
Query: 319 DLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGP 378
DL+S++QK +V HN D IHSKFL PLPP EF+ ++ FP +ID LL
Sbjct: 310 DLLSSAQKLIVGHNCFLDIAHIHSKFLGPLPPTAEEFVSAVNKYFPHIIDTKILLNANNV 369
Query: 379 V-----KKMTNISATIAYL--------------KNRFFAPIEMEIPN--QANENEGKIH- 416
+ K T++SA + L +R +E+++ + +N + G H
Sbjct: 370 LLQRMKKSGTSLSAAFSLLCPQLATSSNKGINWASRPCVNVEVQVDDTRSSNWSSGVKHE 429
Query: 417 -GHNVVKICQLFGKLCSILKITPDAIESSDDFLAS-AINRYANIFY---------SLPGS 465
G++ +F + C+ L + SS++ + + + N+ Y L
Sbjct: 430 AGYDAFMTGCVFAQACNHLGVDFKLKSSSENLAHNEKLQKLINLLYISWINWDIIDLRTG 489
Query: 466 SQEPTNEEIRGWTNDKRKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAF------ 519
++ + + + +++V +W F R+ AG ++ E +AF
Sbjct: 490 NRVAESLGFNYLRKQRPNILFKNIVLIWRFPSRLKAGEIR-------ECICKAFGLNSVT 542
Query: 520 NVRMVDRSCAIVVFGKPGLSNTFKNVMNSK-------AVSGPLREMVSDG-LKAAGYETY 571
++ VD + V F K L + F + S +V PL +++ G AA YETY
Sbjct: 543 SIYHVDETAVFVQFSKAELVSEFLVLKESLDRSNDPISVLHPLSKLLDGGNTCAADYETY 602
Query: 572 QRVCSSGLWESALAD 586
+ +CSS + + AD
Sbjct: 603 KEICSSPISKVRFAD 617
>gi|302774905|ref|XP_002970869.1| hypothetical protein SELMODRAFT_451150 [Selaginella moellendorffii]
gi|300161580|gb|EFJ28195.1| hypothetical protein SELMODRAFT_451150 [Selaginella moellendorffii]
Length = 648
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 187/637 (29%), Positives = 299/637 (46%), Gaps = 77/637 (12%)
Query: 12 IRSFCTKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRV 71
IR FC+ V+ + H IT+ NF + +K + +DF+A+ L+ +G S+PW +
Sbjct: 18 IRLFCSAVVRDSSH-----AITRQNFGAAFQRLKGLLREADFVAMDLEMSGVHSAPWRKS 72
Query: 72 STFDTPETAYLKAKFAAERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPS 129
DT ET Y + +AE+F +LQ +C F+ +SK + +P+NF LFPR+EL +
Sbjct: 73 MELDTLETRYHNVRDSAEKFSLLQCGLCLFRYDQASSKFLGHPFNFFLFPRNELVL---E 129
Query: 130 YSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPA 189
F CQTS L +AK FDFN CIY+GISYLS +E ++ + P
Sbjct: 130 RDFLCQTSSLEFLAKHHFDFNACIYNGISYLSRKEEGKLRALLAKK-------GEDELPE 182
Query: 190 LSV---ADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTID 246
+S+ +D +F ERVR +V W+ + + K + +S R + E PS+ I+
Sbjct: 183 VSMRKTSDLIFSERVRLQVGLWRASKIMAKHKAKQE-ESSGRSSMPDDE--APLPSLVIN 239
Query: 247 VCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDK-----DLLKRELQ 301
V +RQ +LVLK + D LVP+I + TQ V+ + T S E K DL K +L
Sbjct: 240 VSDKRQAKLVLKAVSSNFDDLVPMIEDNEKEATQ-VKVIYTGSSEHKIALQADLDKAKLD 298
Query: 302 TFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRL 361
E + + V GFR+VID IS S+KP+V HN + D I++KF+ PLP N + F +
Sbjct: 299 LMECDVMEAV-GFRQVIDAISESKKPIVGHNCVLDLAHIYNKFIGPLPDNYSGFCNVIHE 357
Query: 362 AFPQVIDVNYLLKDIGPVKKMTNISATIAYL---------KNRFFAPIEMEIPN---QAN 409
FP VID Y+LK + T++ +Y K + + + +EI + + +
Sbjct: 358 LFPAVIDTKYMLKVLRTSISTTSLYPVYSYYFGEDAKKNTKTKAHSTVNVEIADGFHKYS 417
Query: 410 ENEGKIH-GHNVVKICQLFGKLCSILKITPDAIES-SDDFL--ASAINRYANIFY----- 460
+ E K G + +F +L + P + S L AI+ ++N+ Y
Sbjct: 418 DAELKHEAGFDAYMTGAIFAQLWRTVVSNPTEFYALSKKILRGTHAISEFSNLLYMGWAG 477
Query: 461 ----------SLPGSSQEPTNEEIRGWTNDKRKVSCEDVVFLWGFRERISAGILKNMLQG 510
GS P E + R+ + + V +W S+ L+ +++
Sbjct: 478 HFVLDLKTGKEAKGSKALPERE-----SYSARRPASDAAVIVWSQDPVGSSRQLQKLVKS 532
Query: 511 SHE--VFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNS-----KAVSGPLREMVSDGL 563
E F+ V V + A + F S F + S K ++ + S GL
Sbjct: 533 CFEETQFSSEVEVIPVSENAAFLAFKSLRSSEEFSQALESIKTKRKKLNTIAARLSSSGL 592
Query: 564 KAAGYETYQRVCSSGLWESALADALDKTLASHNCLSE 600
+ A + T++++C S L + DA+ S NC S+
Sbjct: 593 EGARFGTFEKLCKSELSTFNIGDAIQ----SINCFSD 625
>gi|302810647|ref|XP_002987014.1| hypothetical protein SELMODRAFT_446815 [Selaginella moellendorffii]
gi|300145179|gb|EFJ11857.1| hypothetical protein SELMODRAFT_446815 [Selaginella moellendorffii]
Length = 603
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 174/619 (28%), Positives = 282/619 (45%), Gaps = 99/619 (15%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
+T++N+ E+L E + HI + F+AV L+ +G ++PW + D T YL + +AE+F
Sbjct: 4 VTRSNWEEALVEARAHIRQAAFVAVDLELSGVQTTPWRGATEVDNLHTRYLNLRDSAEKF 63
Query: 92 QILQFAICPFKLQAS--KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
++QF +CP A+ K IAYPYNF LFPR EL++ MP+ F CQ + L +AK FDF
Sbjct: 64 AMIQFGLCPVVWDAASVKFIAYPYNFCLFPRHELQIEMPARDFLCQATSLEFLAKHQFDF 123
Query: 150 NTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSS------PALSVADTVFIERVRS 203
N CIYDGISYLS QE + ++ A D A + S P AD +F E VR
Sbjct: 124 NACIYDGISYLSHEQEKLARHKLKLTDA-DGAPRELESFSVLEIPLNRTADVIFSESVRV 182
Query: 204 RVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPS----MTIDVCSERQVQLVLKM 259
+ W++ VL E+ P + ++V + LV ++
Sbjct: 183 QAGEWRDK-------------------VLQREKDAQEPEERLCLVVEVAGNHEANLVHQV 223
Query: 260 L-EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR------ 312
L + F D ++P G + V+ + + S +++ LL ++E+++R R
Sbjct: 224 LRKSFQD-----LVPFTEDGAKKVKILFSRSVKERALL-----VGQWEKDRRSRLENQIM 273
Query: 313 ---GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDV 369
GFR++ID + S+KP+V HN D I+SKF A LP + +EF S+ FP + D
Sbjct: 274 DAVGFRQLIDTLVESKKPVVGHNCFLDIAHIYSKFFATLPLSCSEFCSSIHQHFPCIFDT 333
Query: 370 NYLLKDIGPVKKMTNISAT--------IAYLKNRFFAPIEMEIPNQANENEGKIH---GH 418
YLLK ++M T + L N+ PIE N + ++ G+
Sbjct: 334 KYLLKADSAAQEMLGKGGTTLGPVFSNVGKLPNK--VPIEFGSSNLCRYDGTEMKHEAGY 391
Query: 419 NVVKICQLFGKLCSILKITP--------DAIESSDDFLASAINRYANIFY-SLPG----- 464
+ +F +C +K+ P A E ++ S + +AN Y G
Sbjct: 392 DAYMTAAVFANICQFVKMDPANLPSLCEQAKEGEEE--RSGLGSHANHLYLGWRGHFVLD 449
Query: 465 --SSQEPTNEEIRGWTNDKRKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEA---- 518
+ QE T + + + V +WG S+ + L+ + A
Sbjct: 450 LSTGQEATGPRSLKSSRSIEREKAKSVALMWGSGSTRSSEVDSRSLEADVKACFTAKSPP 509
Query: 519 -FNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKAVSG--------PLREMVSDGLKAAGYE 569
V +D S A VVF + + ++++ + SG + +V+ G K A YE
Sbjct: 510 HVEVVRIDESSAFVVFRR---KESLESLVQAFECSGHHDKVGVCDVSGLVARGWKIARYE 566
Query: 570 TYQRVCSSGLWESALADAL 588
++++C S L + L DA+
Sbjct: 567 FFEKLCESPLSTAKLTDAV 585
>gi|297847952|ref|XP_002891857.1| Poly(A)-specific ribonuclease [Arabidopsis lyrata subsp. lyrata]
gi|297337699|gb|EFH68116.1| Poly(A)-specific ribonuclease [Arabidopsis lyrata subsp. lyrata]
Length = 689
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 170/638 (26%), Positives = 305/638 (47%), Gaps = 69/638 (10%)
Query: 27 WPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKF 86
+P+K +T++NF +L+++++ + ++DF+A+ L+ TG S+PW FD + YLK K
Sbjct: 36 FPLKHVTRSNFETTLNDLRSLVKAADFVAIDLEMTGVTSAPWRDSLEFDRYDVRYLKVKD 95
Query: 87 AAERFQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
+AE+F ++QF +CPF+ + +++P+NF +FPR EL P++ F CQT+ + +AK
Sbjct: 96 SAEKFAVVQFGVCPFRWDSRTQSFVSHPHNFFVFPRQELTFDPPAHEFLCQTTSMDFLAK 155
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALS---VADTVFIERV 201
FDFNTCI++GISYLS QE R+ + S + L +ADT+F R+
Sbjct: 156 YQFDFNTCIHEGISYLSRRQEEEASKRLEMLHGEEGIVSSGETEDLKLVRLADTLFAVRM 215
Query: 202 RSRVKHWKNACTD-SDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKML 260
+ W++ + +E +++ + RP++++ + Q++++ +L
Sbjct: 216 EKMLNEWRSGLLHGGNASSEFPRISNGSTQSMETVFHHMRPALSLKGFTSHQLRVLNSVL 275
Query: 261 EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR-------- 312
LV + K +Q V T S+ DK+ L +E + ++ KR+
Sbjct: 276 GKHFGDLVYIHSNDKDSCSQGF-VVYTDSESDKENLMKEAK----DERKRLAERKIQSAI 330
Query: 313 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
GFR+VIDL+++ +K +V HN D ++SKF+ PLP +F+ S+ FP ++D L
Sbjct: 331 GFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINSHFPYIVDTKIL 390
Query: 373 LKDIGPV--KKMTNIS-------------------ATIAYLKNRFFAPIEMEIPNQANEN 411
L ++ P+ ++M S ++ ++L+ R +E++ +N N
Sbjct: 391 L-NVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEIDNVRCSNWN 449
Query: 412 EGKIH--GHNVVKICQLFGKLCSILKITPDAIESSDDFLAS-AINRYANIFYSLPGSSQE 468
G H G++ +F + C+ L D+F + + +Y N Y L + +
Sbjct: 450 AGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDNFAQNEKLEKYINRLY-LSWTRGD 508
Query: 469 PTNEEIRGWTNDKRKVS---CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAF------ 519
N D +VS E++V +W F ++ A +K E +AF
Sbjct: 509 IINLRTGHSNADNWRVSKFKYENIVLIWNFPRKLKAREIK-------ECICKAFGSASVT 561
Query: 520 NVRMVDRSCAIVVFGKPGLSNTF---KNVMNSK----AVSGPLREMVSDG-LKAAGYETY 571
+V VD S V+F L F K + S +V PL +++ G AA YE Y
Sbjct: 562 SVYHVDDSAVFVLFKNSELVWDFLTLKRQLESSDGPVSVLHPLSKILEGGNTGAADYEAY 621
Query: 572 QRVCSSGLWESALADALDKTLASHNCLSEAAYETKQSE 609
+ +CSS + + +D + + ET++ E
Sbjct: 622 KEICSSNISKILFSDQAETVGVKSRTRPDPQGETQRRE 659
>gi|293331279|ref|NP_001169499.1| uncharacterized protein LOC100383372 [Zea mays]
gi|224029697|gb|ACN33924.1| unknown [Zea mays]
gi|413918598|gb|AFW58530.1| hypothetical protein ZEAMMB73_225129 [Zea mays]
Length = 693
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 170/628 (27%), Positives = 301/628 (47%), Gaps = 79/628 (12%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+KQ+T+ N E+L +++ + + F+ + L+ +G S+PW D + YLK + +A
Sbjct: 37 VKQVTRGNMEEALEKLRGRVREAAFVGLDLEMSGVTSAPWRDTFELDRADVRYLKLRDSA 96
Query: 89 ERFQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
ERF LQ +CPF+ +K +A+P+NF +FPR EL S+ F CQT+ + +AK
Sbjct: 97 ERFAALQLGVCPFRWDPAKSAFVAHPHNFFIFPRKELPSDCSSHEFLCQTTSIEFLAKYQ 156
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSS------PALSVADTVFIER 200
FDFNTC +GISYLS AQE + T S++S P S +D +F ER
Sbjct: 157 FDFNTCFREGISYLSRAQEEEALQKFNMLHHGRTVTSSTNSEEDGDMPLKSASDILFTER 216
Query: 201 VRSRVKHWKNACTDSDIKTEAALVTSLR-KIVLGGEQFGS-----RPSMTIDVCSERQVQ 254
++ K W++A I ++ + L I G QF + RP++ ++ S Q++
Sbjct: 217 MKMNFKEWRDA-----IASKPMVDNHLSGNIKCGSGQFQTVFFKMRPAIILNGFSSHQLK 271
Query: 255 LVLKML-EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR- 312
L+ ++L ++F D++ + T + V + +DED+ LL +++Q + +N+ R
Sbjct: 272 LIQQVLRKNFRDLI--FVCTFGEDDTSEKKVVYSDTDEDRILLMKDVQE-DLLKNREERI 328
Query: 313 ----GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVID 368
G R VIDL+S+ +K +V H+ D ++SKF+ PLP ++ EF S FP + D
Sbjct: 329 KSAIGIRHVIDLLSSERKLIVGHSCFLDIAQVYSKFVRPLPSSIKEFALSFHKFFPHIAD 388
Query: 369 VNYLLKDIGPVKKMT---NISATIAYL-----------KNRFFAPIEMEIPNQANEN--- 411
+L+ V+K+ + S + A+L K +P+ +E+ +
Sbjct: 389 TRHLMSVNQAVQKLMKHKSKSLSSAFLLLCPASYSSVEKPSSHSPVTIEVEGDETMSSRF 448
Query: 412 -EGKIH--GHNVVKICQLFGKLCSILKI------------TPDAIESSDDFLASAINRYA 456
G H G++ +F +LC+ L I T ++ +FL+ + N
Sbjct: 449 ISGAKHEAGYDAYMTGCIFAQLCAYLGIQFEQFSPLDNLATNTKLQKHINFLSPSWNSGT 508
Query: 457 NIFYSLPGSSQEPTNEEIRGWTNDKRKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFA 516
+ S + +P G+T +++V +WGF ++ +K+ + +VF
Sbjct: 509 VLDLSTGMETPDP------GYTRRYPAAVYDNIVVIWGFLSKVRPKEIKDCI---CKVFG 559
Query: 517 EA--FNVRMVDRSCAIVVFGKPGLSNTFKNVM-------NSKAVSGPLREMVSDG-LKAA 566
V +D + A+V F K N F ++ ++ ++ PL ++ G +AA
Sbjct: 560 SGSVTTVFSIDSTAALVQFKKQESVNDFLDLKAVLERADSAISILHPLSTILEGGQTRAA 619
Query: 567 GYETYQRVCSSGLWESALADALDKTLAS 594
Y+TY+ +CSS + AD + A+
Sbjct: 620 KYDTYRDICSSSESKYLFADQAEAVCAT 647
>gi|302807724|ref|XP_002985556.1| hypothetical protein SELMODRAFT_424560 [Selaginella moellendorffii]
gi|300146762|gb|EFJ13430.1| hypothetical protein SELMODRAFT_424560 [Selaginella moellendorffii]
Length = 603
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 172/620 (27%), Positives = 283/620 (45%), Gaps = 101/620 (16%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
+T++N+ E+L E + HI + F+AV L+ TG ++PW + D T YL + +AE+F
Sbjct: 4 VTRSNWEEALVEARAHIRQAAFVAVDLELTGVQTTPWRGATEVDNLHTRYLNLRDSAEKF 63
Query: 92 QILQFAICPFKLQAS--KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
++QF +CP A+ K IAYPYNF LFPR EL++ MP+ F CQ + L +AK FDF
Sbjct: 64 AMIQFGLCPVLWDAAGGKFIAYPYNFCLFPRHELQIEMPARDFLCQATSLEFLAKHQFDF 123
Query: 150 NTCIYDGISYLSEAQESTV--KVRMGNPMAVDHATKSSSS---PALSVADTVFIERVRSR 204
N CIYDGISYLS QE K+++ + +S S+ P AD +F E VR +
Sbjct: 124 NACIYDGISYLSHEQEKLARHKLKLTDADGAPRELESFSALEIPLNRTADVIFSESVRVQ 183
Query: 205 VKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPS----MTIDVCSERQVQLVLKML 260
W++ VL E+ P + ++V + LV ++L
Sbjct: 184 AGEWRDK-------------------VLQREKDAHEPEERLCLVVEVAGNHEANLVHQVL 224
Query: 261 -EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR------- 312
+ F D ++P G + V+ + S +++ LL ++E+++R R
Sbjct: 225 RKSFQD-----LVPFTEDGAKKVKILFPRSVKERALL-----VGQWEKDRRSRLENQIMD 274
Query: 313 --GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVN 370
GFR++ID + S+KP+V HN D I++KF A LP + +EF S+ FP + D
Sbjct: 275 AIGFRQLIDALVESKKPVVGHNCFLDIAHIYNKFFATLPLSCSEFCSSIHQHFPCIFDTK 334
Query: 371 YLLKDIGPVKKMTNISAT--------IAYLKNRFFAPIEMEIPNQA----NENEGKIH-G 417
YLLK ++M T + L N+ +++E + + + E K G
Sbjct: 335 YLLKADSAAQEMLGKGGTTLGPVFSNVGKLPNK----VQIEFGSSSLCRYDGTEMKHEAG 390
Query: 418 HNVVKICQLFGKLCSILKITP--------DAIESSDDFLASAINRYANIFY-SLPG---- 464
++ +F +C +K+ P A E ++ S + +AN Y G
Sbjct: 391 YDAYMTAAVFANICQFMKMDPANLPSLCEQAKEGEEE--RSGLGSHANHLYLGWRGHFVL 448
Query: 465 ---SSQEPTNEEIRGWTNDKRKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEA--- 518
+ QE T + + + V +WG S + L+ + A
Sbjct: 449 DLSTGQEATGPRSLKSSRSIEREKAKSVALMWGSGSTRSLEVDSRSLEADVKACFTAKSP 508
Query: 519 --FNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKAVSG--------PLREMVSDGLKAAGY 568
V +D S A VVF + + ++++ + SG + +V+ G K A Y
Sbjct: 509 PHVEVVRIDESSAFVVFRR---KESLESLVQAFECSGHHDKVGVCDVSGLVARGWKIARY 565
Query: 569 ETYQRVCSSGLWESALADAL 588
E ++++C S L + L DA+
Sbjct: 566 EFFEKLCESPLSTAKLTDAV 585
>gi|357167784|ref|XP_003581331.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Brachypodium
distachyon]
Length = 729
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 166/625 (26%), Positives = 300/625 (48%), Gaps = 67/625 (10%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+KQ+T+ N E+L E++ + + F+ + L+ +G S+PW D + YLK + +A
Sbjct: 47 VKQVTRGNLAEALEELRARVRDAAFVGLDLEMSGVTSAPWRDTFELDRADVRYLKLRDSA 106
Query: 89 ERFQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
+RF LQ +CPF+ +K +A+P+NF +FPR EL + S+ F CQT+ + +AK
Sbjct: 107 QRFAALQLGVCPFRWDPAKSAFVAHPHNFFIFPRKELPDDISSHEFLCQTTSIDFLAKYQ 166
Query: 147 FDFNTCIYDGISYLSEAQE----STVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVR 202
FDFNTC ++GISYLS AQE + V + +A + ++ P S AD +F ER++
Sbjct: 167 FDFNTCFHEGISYLSRAQEEEALQKLNVLYHDGIASPNTSEEEDVPLRSTADLLFTERMK 226
Query: 203 SRVKHWK-----NACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVL 257
+ K W+ N D+ T + V F P++ ++ + Q++L+
Sbjct: 227 IKFKEWRDVIISNPRMDNHWLECNKFSTHQFQTVF----FKMHPAILLNGFTSHQLKLIQ 282
Query: 258 KML-EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR---- 312
++L +DF D++ I T R V T D L ++LQ + +++ R
Sbjct: 283 QVLRKDFKDLM--YISTFGEDNTSEKRVVYTDDSNDSVSLMKDLQE-DLLRSREARVKSA 339
Query: 313 -GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNY 371
G R VIDL+++ +K +V H+ D ++SKF+ PLP + EF + P + D +
Sbjct: 340 VGIRHVIDLLASERKLIVGHSCFLDIAQVYSKFIGPLPSTVKEFALGIHKILPYIADTRH 399
Query: 372 LLKDIGPV-----KKMTNISATIAYLKNRF---------FAPIEMEIPNQANEN------ 411
L+ V +K ++S+ + L F +P+ +E+ +A+E
Sbjct: 400 LMSASDSVQYLMRQKSKSLSSVFSLLCPAFHSTVAEPSTLSPVRIEV--EADETMLSCFA 457
Query: 412 EGKIH--GHNVVKICQLFGKLCSILKITPDAIESSDDF-LASAINRYANIFYSL--PGSS 466
G H G++ +F +LC L + + + D+ + + + +Y N+ G+S
Sbjct: 458 SGAKHEAGYDAFMTGCVFAQLCDHLDVKFEHLPPRDNLAMNNKLQKYINLLSPSFNSGTS 517
Query: 467 QEPTNEEIRGWTNDKRK---VSCEDVVFLWGFRERISAGILKNMLQGSHEVF--AEAFNV 521
+ + R T KR+ V ++VV +WG++ + +K+ + +VF A +
Sbjct: 518 LDLSTGMERPDTGYKRRYPTVLYDNVVLIWGYQSELRPRDIKDCIC---KVFGPASVTTI 574
Query: 522 RMVDRSCAIVVFGKPGLSNTFKNVM-------NSKAVSGPLREMVSDG-LKAAGYETYQR 573
+D + +V F K N F ++ ++ +V PL ++ G +AA Y+TY+
Sbjct: 575 FSIDSTAVLVQFSKQESVNDFMDLKAALEKTDSAISVLHPLSTILEGGKTRAANYDTYRD 634
Query: 574 VCSSGLWESALADALDKTLASHNCL 598
+C S + + AD + +S L
Sbjct: 635 ICGSSVSKYFFADQAEAVCSSSKSL 659
>gi|293333314|ref|NP_001169910.1| uncharacterized protein LOC100383807 [Zea mays]
gi|224032309|gb|ACN35230.1| unknown [Zea mays]
Length = 280
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 110/280 (39%), Positives = 177/280 (63%), Gaps = 11/280 (3%)
Query: 340 IHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAP 399
+H+KF+APLPPNM+EF+CSL++ FP V+D+++L + IGP++K NI A ++YL+ ++F P
Sbjct: 2 LHTKFIAPLPPNMHEFMCSLKMVFPNVVDISHLWRQIGPLRKAKNIQAALSYLQRQYFVP 61
Query: 400 IEMEIPNQANENEGKIHGHNVVKICQLFGKLCSILKITPDAIESSDDFLASAINRYANIF 459
IE+EIP Q + + NV++I +LF KL ++LKI+P+ S + +A+ Y NIF
Sbjct: 62 IEIEIPQQDGTSSITKNEQNVLRITKLFAKLSNLLKISPECQLQSRE-QCTAVEEYCNIF 120
Query: 460 YSLPGSSQEPTNEEIRGWTNDKRK-VSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEA 518
Y P +++ + +D + VS ++++FLWGFRE+ S LK+ L G H+ F+E
Sbjct: 121 Y--PSCVVGGSDDANFAFESDTTETVSTDNIIFLWGFREK-SVKELKSYLIGLHQAFSED 177
Query: 519 FNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKAVSGP-LREMVSDGLKAAGYETYQRVCSS 577
F V+++D++C+ ++F SNT ++ GP L S+GLKAAG+E Y++VC
Sbjct: 178 FEVKLLDKTCSALIFRD---SNTAMQLLKEIGSEGPSLNRFFSEGLKAAGFEVYKKVCRL 234
Query: 578 GLWESALADALDKTLASHNCLSEAAYETKQSEIYLSNELI 617
GLW+S LA+ L+ S E S+IY ++EL+
Sbjct: 235 GLWDSDLAEVLED--VSSELGVPTLPECSTSQIYWNSELM 272
>gi|413918597|gb|AFW58529.1| hypothetical protein ZEAMMB73_225129 [Zea mays]
Length = 686
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 164/626 (26%), Positives = 298/626 (47%), Gaps = 82/626 (13%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+KQ+T+ N E+L +++ + + F+ + L+ +G S+PW D + YLK + +A
Sbjct: 37 VKQVTRGNMEEALEKLRGRVREAAFVGLDLEMSGVTSAPWRDTFELDRADVRYLKLRDSA 96
Query: 89 ERFQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
ERF LQ +CPF+ +K +A+P+NF +FPR EL S+ F CQT+ + +AK
Sbjct: 97 ERFAALQLGVCPFRWDPAKSAFVAHPHNFFIFPRKELPSDCSSHEFLCQTTSIEFLAKYQ 156
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRM-GNPMAVDHATKSSSS---PALSVADTVFIERVR 202
FDFNTC + ++ +E+ K M + V +T S P S +D +F ER++
Sbjct: 157 FDFNTCFRE-----AQEEEALQKFNMLHHGRTVTSSTNSEEDGDMPLKSASDILFTERMK 211
Query: 203 SRVKHWKNACTDSDIKTEAALVTSLR-KIVLGGEQFGS-----RPSMTIDVCSERQVQLV 256
K W++A I ++ + L I G QF + RP++ ++ S Q++L+
Sbjct: 212 MNFKEWRDA-----IASKPMVDNHLSGNIKCGSGQFQTVFFKMRPAIILNGFSSHQLKLI 266
Query: 257 LKML-EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR--- 312
++L ++F D++ + T + V + +DED+ LL +++Q + +N+ R
Sbjct: 267 QQVLRKNFRDLI--FVCTFGEDDTSEKKVVYSDTDEDRILLMKDVQE-DLLKNREERIKS 323
Query: 313 --GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVN 370
G R VIDL+S+ +K +V H+ D ++SKF+ PLP ++ EF S FP + D
Sbjct: 324 AIGIRHVIDLLSSERKLIVGHSCFLDIAQVYSKFVRPLPSSIKEFALSFHKFFPHIADTR 383
Query: 371 YLLKDIGPVKKMT---NISATIAYL-----------KNRFFAPIEMEIPNQANEN----E 412
+L+ V+K+ + S + A+L K +P+ +E+ +
Sbjct: 384 HLMSVNQAVQKLMKHKSKSLSSAFLLLCPASYSSVEKPSSHSPVTIEVEGDETMSSRFIS 443
Query: 413 GKIH--GHNVVKICQLFGKLCSILKI------------TPDAIESSDDFLASAINRYANI 458
G H G++ +F +LC+ L I T ++ +FL+ + N +
Sbjct: 444 GAKHEAGYDAYMTGCIFAQLCAYLGIQFEQFSPLDNLATNTKLQKHINFLSPSWNSGTVL 503
Query: 459 FYSLPGSSQEPTNEEIRGWTNDKRKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEA 518
S + +P G+T +++V +WGF ++ +K+ + +VF
Sbjct: 504 DLSTGMETPDP------GYTRRYPAAVYDNIVVIWGFLSKVRPKEIKDCI---CKVFGSG 554
Query: 519 --FNVRMVDRSCAIVVFGKPGLSNTFKNVM-------NSKAVSGPLREMVSDG-LKAAGY 568
V +D + A+V F K N F ++ ++ ++ PL ++ G +AA Y
Sbjct: 555 SVTTVFSIDSTAALVQFKKQESVNDFLDLKAVLERADSAISILHPLSTILEGGQTRAAKY 614
Query: 569 ETYQRVCSSGLWESALADALDKTLAS 594
+TY+ +CSS + AD + A+
Sbjct: 615 DTYRDICSSSESKYLFADQAEAVCAT 640
>gi|357504879|ref|XP_003622728.1| Poly(A)-specific ribonuclease PARN-like protein [Medicago
truncatula]
gi|355497743|gb|AES78946.1| Poly(A)-specific ribonuclease PARN-like protein [Medicago
truncatula]
Length = 206
Score = 195 bits (495), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 91/146 (62%), Positives = 115/146 (78%), Gaps = 5/146 (3%)
Query: 13 RSFCTKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSS-PWHRV 71
RS CTK W +KQ+T +NFN+SL EIK +IS+SDFIA+S++ TGS S+ PWHRV
Sbjct: 16 RSLCTKISSSK---WKVKQVTISNFNDSLEEIKTNISNSDFIAISMEKTGSSSTTPWHRV 72
Query: 72 STFDTPETAYLKAKFAAERFQILQFAICPFKLQASK-VIAYPYNFHLFPRDELKMGMPSY 130
FDT ETAYLKA +A+RFQ+LQFA+CPF + S ++A+PYNF LFPRDELK+GMP+Y
Sbjct: 73 QPFDTAETAYLKASQSAQRFQLLQFAVCPFSVTDSNNLVAHPYNFLLFPRDELKLGMPAY 132
Query: 131 SFTCQTSYLTAMAKEGFDFNTCIYDG 156
SF CQTS+L MA++GFDFN CIY+G
Sbjct: 133 SFLCQTSHLATMARQGFDFNACIYEG 158
>gi|116309728|emb|CAH66773.1| OSIGBa0115M15.11 [Oryza sativa Indica Group]
Length = 703
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 162/629 (25%), Positives = 289/629 (45%), Gaps = 94/629 (14%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+KQ+T+ N E+L E++ + + F+ + L+ +G S+PW D + YLK + +A
Sbjct: 46 VKQVTRGNLAEALEELRARVRGAAFVGIDLEMSGVTSAPWRDTLELDRADVRYLKLRDSA 105
Query: 89 ERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
ER +NF +F R+E ++ F CQT+ + +AK FD
Sbjct: 106 ER----------------------HNFFIFSRNEPLNDCSTHEFLCQTTSIDFLAKYQFD 143
Query: 149 FNTCIYDGISYLSEAQESTVKVRM----GNPMAV--DHATKSSSSPALSVADTVFIERVR 202
FNTC +GI YLS QE ++ N + + + + +P S AD +F ER++
Sbjct: 144 FNTCFREGIYYLSRTQEEEALQKLYTLHNNETSAYPNTSEEEEDAPLKSAADVLFTERMK 203
Query: 203 SRVKHWKNACTDS----DIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLK 258
+ W+N+ + D ++E + V F RP++ ++ + Q++L+ +
Sbjct: 204 IKFNEWRNSIVSNQRVDDHRSENFKFADQFQTVF----FKMRPAIMLNGFTSHQLKLIRQ 259
Query: 259 MLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDK---------DLLK-RELQTFEFEQN 308
+L LV + + G ++ R V T ++EDK DLLK RE +
Sbjct: 260 ILRTHFRDLVYVCTFLEDGVSEK-RVVYTDTNEDKISLMKNVREDLLKSREAKV------ 312
Query: 309 KRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVID 368
K G R VIDL+++ +K +V H+ D I+SKF+ PLP +M EF S+ FP + D
Sbjct: 313 KSAVGIRHVIDLLASERKLIVGHSCFLDIAQIYSKFVGPLPSSMEEFALSINRMFPHMAD 372
Query: 369 VNYLLKDIGPVK-----KMTNISATIAYLKNRFFAPIE-------MEIPNQANE------ 410
+L+ V+ K ++S+ + L AP E + I +A+E
Sbjct: 373 TRHLMSVNDAVQYRMRHKSKSLSSAFSLLCPALHAPDEKSSTLPSVRIEVEADETVLSCF 432
Query: 411 NEGKIH--GHNVVKICQLFGKLCSILKITPDAIESSDDFLASAINRYANIFYSLP----G 464
G H G++ +F +LC+ I + + +D LA+ IN +I P G
Sbjct: 433 TSGAKHEAGYDAFMTGCVFVQLCAYHGIKFEQLSPLED-LATNINLKKHINLLPPCWNSG 491
Query: 465 SSQEPTNEEIRGWTNDKRKVSC---EDVVFLWGFRERISAGILKNMLQGSHEVFAEA--F 519
+ + + R KR+ ++V+ +WGF+ ++ +K+ + +VF A
Sbjct: 492 TVLDLSTGTERPDAGYKRRYPAAVYDNVILIWGFQSKVRPKDIKDCI---CKVFGRASVT 548
Query: 520 NVRMVDRSCAIVVFGKP-------GLSNTFKNVMNSKAVSGPLREMVSDG-LKAAGYETY 571
+V +D + +V F K L T ++ ++ +V PL ++ G +AA Y+TY
Sbjct: 549 SVFPIDSTAVLVQFSKQESVNDFLDLKATLESADSAISVLHPLSTILEGGKTRAAKYDTY 608
Query: 572 QRVCSSGLWESALADALDKTLASHNCLSE 600
+ +C S + + + AD + ++ N S+
Sbjct: 609 RDICRSSVSKFSFADQAEAVCSTSNSESK 637
>gi|8778305|gb|AAF79314.1|AC002304_7 F14J16.11 [Arabidopsis thaliana]
Length = 660
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 118/470 (25%), Positives = 232/470 (49%), Gaps = 56/470 (11%)
Query: 27 WPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKF 86
+P+K +T++NF +L+++++ + ++DF+A+ L+ TG S+PW FD + YLK K
Sbjct: 95 FPLKHVTRSNFETTLNDLRSLVKAADFVAIDLEMTGVTSAPWRDSLEFDRYDVRYLKVKD 154
Query: 87 AAERFQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
+AE+F ++QF +CPF+ + ++YP+NF +FPR EL P++ F CQT+ + +AK
Sbjct: 155 SAEKFAVVQFGVCPFRWDSRTQSFVSYPHNFFVFPRQELTFDPPAHEFLCQTTSMDFLAK 214
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRM-GNPMAVDHATKSSSSPALSVADTVFIERVRS 203
Y E +E++ +++M +D + ++ + +AD +F R+
Sbjct: 215 --------------YQREEEEASKRLKMLHGEDGIDSSGETEELKLVRLADVLFAARMEK 260
Query: 204 RVKHWKNACTD-SDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLED 262
+ W++ + +E +++ + RP++++ + Q++++ +L
Sbjct: 261 LLNEWRSGLLHGGNASSEFPRISNGSNQSMETVFHHMRPALSLKGFTSHQLRVLNSVLRK 320
Query: 263 FSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR--------GF 314
LV + K ++ + V T SD DK+ L +E + ++ KR+ GF
Sbjct: 321 HFGDLVYIHSNDKSSSSRDI-VVYTDSDSDKENLMKEAK----DERKRLAERKIQSAIGF 375
Query: 315 REVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLK 374
R+VIDL+++ +K +V HN D ++SKF+ PLP +F+ S+ FP ++D LL
Sbjct: 376 RQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINSHFPYIVDTKILL- 434
Query: 375 DIGPV--KKMTNIS-------------------ATIAYLKNRFFAPIEMEIPNQANENEG 413
++ P+ ++M S ++ ++L+ R +E++ +N N G
Sbjct: 435 NVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEIDNVRCSNWNAG 494
Query: 414 KIH--GHNVVKICQLFGKLCSILKITPDAIESSDDFLAS-AINRYANIFY 460
H G++ +F + C+ L DDF + + +Y N Y
Sbjct: 495 GKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDDFAQNEKLEKYINRLY 544
>gi|116310355|emb|CAH67368.1| OSIGBa0128P10.2 [Oryza sativa Indica Group]
Length = 702
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 160/629 (25%), Positives = 287/629 (45%), Gaps = 95/629 (15%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+KQ+T+ N E+L E++ + + F+ + L+ +G S+PW D + YLK + +A
Sbjct: 46 VKQVTRGNLAEALEELRARVRGAAFVGIDLEMSGVTSAPWRDTLELDRADVRYLKLRDSA 105
Query: 89 ERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
+NF +F R+E ++ F CQT+ + +AK FD
Sbjct: 106 R-----------------------HNFFIFSRNEPLNDCSTHEFLCQTTSIDFLAKYQFD 142
Query: 149 FNTCIYDGISYLSEAQESTVKVRM----GNPMAV--DHATKSSSSPALSVADTVFIERVR 202
FNTC +GI YLS QE ++ N + + + + +P S AD +F ER++
Sbjct: 143 FNTCFREGIYYLSRTQEEEALQKLYTLHNNETSAYPNTSEEEEDAPLKSAADVLFTERMK 202
Query: 203 SRVKHWKNACTDS----DIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLK 258
+ W+N+ + D ++E + V F RP++ ++ + Q++L+ +
Sbjct: 203 IKFNEWRNSIVSNQRVDDHRSENFKFADQFQTVF----FKMRPAIMLNGFTSHQLKLIRQ 258
Query: 259 MLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDK---------DLLK-RELQTFEFEQN 308
+L LV + + G ++ R V T ++EDK DLLK RE +
Sbjct: 259 ILRTHFRDLVYVCTFLEDGVSEK-RVVYTDTNEDKISLMKNVREDLLKSREAKV------ 311
Query: 309 KRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVID 368
K G R VIDL+++ +K +V H+ D I+SKF+ PLP +M EF S+ FP + D
Sbjct: 312 KSAVGIRHVIDLLASERKLIVGHSCFLDIAQIYSKFVGPLPSSMEEFALSINRMFPHMAD 371
Query: 369 VNYLLKDIGPVK-----KMTNISATIAYLKNRFFAPIE-------MEIPNQANE------ 410
+L+ V+ K ++S+ + L AP E + I +A+E
Sbjct: 372 TRHLMSVNDAVQYRMRHKSKSLSSAFSLLCPALHAPDEKSSTLPSVRIEVEADETVLSCF 431
Query: 411 NEGKIH--GHNVVKICQLFGKLCSILKITPDAIESSDDFLASAINRYANIFYSLP----G 464
G H G++ +F +LC+ I + + +D LA+ IN +I P G
Sbjct: 432 TSGAKHEAGYDAFMTGCVFVQLCAYHGIKFEQLSPLED-LATNINLKKHINLLPPCWNSG 490
Query: 465 SSQEPTNEEIRGWTNDKRKVSC---EDVVFLWGFRERISAGILKNMLQGSHEVFAEA--F 519
+ + + R KR+ ++V+ +WGF+ ++ +K+ + +VF A
Sbjct: 491 TVLDLSTGTERPDAGYKRRYPAAVYDNVILIWGFQSKVRPKDIKDCI---CKVFGRASVT 547
Query: 520 NVRMVDRSCAIVVFGKP-------GLSNTFKNVMNSKAVSGPLREMVSDG-LKAAGYETY 571
+V +D + +V F K L T ++ ++ +V PL ++ G +AA Y+TY
Sbjct: 548 SVFPIDSTAVLVQFSKQESVNDFLDLKATLESADSAISVLHPLSTILEGGKTRAAKYDTY 607
Query: 572 QRVCSSGLWESALADALDKTLASHNCLSE 600
+ +C S + + + AD + ++ N S+
Sbjct: 608 RDICRSSVSKFSFADQAEAVCSTSNSESK 636
>gi|57834081|emb|CAE05998.4| OSJNBa0016O02.8 [Oryza sativa Japonica Group]
Length = 622
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 143/603 (23%), Positives = 258/603 (42%), Gaps = 123/603 (20%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+KQ+T+ N E+L E++ + + F+ + L+ +G S+PW D + YLK + +A
Sbjct: 46 VKQVTRGNLAEALEELRARVRGAAFVGIDLEMSGVTSAPWRDTLGLDRADVRYLKLRDSA 105
Query: 89 ERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
ERF LQ +CPF+ +K F P E + Y+ +
Sbjct: 106 ERFAALQLGVCPFRWDPAKSA-----FVAHPTQEEEALQKLYTL--------------HN 146
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
T Y S E +E +P S AD +F ER++ + W
Sbjct: 147 NETSAYPNTS---EEEED--------------------APLKSAADVLFTERMKIKFNEW 183
Query: 209 KNACTDS----DIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFS 264
+N+ + D ++E + V F RP++ ++ + Q++L+ ++L
Sbjct: 184 RNSIVSNQRVDDHRSENFKFADQFQTVF----FKMRPAIMLNGFTSHQLKLIRQILRTHF 239
Query: 265 DVLVPLIIPAKGGGTQAVRAVLTSSDEDK---------DLLK-RELQTFEFEQNKRVRGF 314
LV + + G ++ R V T ++EDK DLLK RE + K G
Sbjct: 240 RDLVYVCTFLEDGVSEK-RVVYTDTNEDKISLMKNVREDLLKSREAKV------KSAVGI 292
Query: 315 REVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLK 374
R VIDL+++ +K +V H+ D I+SKF+ PLP +M EF S+ FP + D +L+
Sbjct: 293 RHVIDLLASERKLIVGHSCFLDIAQIYSKFVGPLPSSMEEFALSINRMFPHMADTRHLM- 351
Query: 375 DIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSIL 434
+++ + Y R+ A +++ Q LC+
Sbjct: 352 ---------SVNDAVQY---RYLASLQVLSMKQ----------------------LCAYH 377
Query: 435 KITPDAIESSDDFLASAINRYANIFYSLP----GSSQEPTNEEIRGWTNDKRKVSC---E 487
I + + +D LA+ IN +I P G+ + + R KR+ +
Sbjct: 378 GIKFEQLSPLED-LATNINLKKHINLLPPCWNSGTVLDLSTGTERPDAGYKRRYPAAVYD 436
Query: 488 DVVFLWGFRERISAGILKNMLQGSHEVFAEA--FNVRMVDRSCAIVVFGKP-------GL 538
+V+ +WGF+ ++ +K+ + +VF A +V +D + +V F K L
Sbjct: 437 NVILIWGFQSKVRPKDIKDCI---CKVFGRASVTSVFPIDSTAVLVQFSKQESVNDFLDL 493
Query: 539 SNTFKNVMNSKAVSGPLREMVSDG-LKAAGYETYQRVCSSGLWESALADALDKTLASHNC 597
T ++ ++ +V PL ++ G +AA Y+TY+ +C S + + + AD + ++ N
Sbjct: 494 KATLESADSAISVLHPLSTILEGGKTRAAKYDTYRDICRSSVSKFSFADQAEAVCSTSNS 553
Query: 598 LSE 600
S+
Sbjct: 554 ESK 556
>gi|78484000|dbj|BAE47489.1| polyA specific ribonuclease [Arabidopsis thaliana]
Length = 540
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 133/541 (24%), Positives = 243/541 (44%), Gaps = 83/541 (15%)
Query: 142 MAKEGFDFNTCIYDGISYLS--EAQESTVKVRM-GNPMAVDHATKSSSSPALSVADTVFI 198
+AK FDFNTCI++GISYLS E +E++ +++M +D + ++ + +AD +F
Sbjct: 4 LAKYQFDFNTCIHEGISYLSRREEEEASKRLKMLHGEDGIDSSGETEELKLVRLADVLFA 63
Query: 199 ERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQ------FGSRPSMTIDVCSERQ 252
R+ + W+ S + + +I G Q RP++++ + Q
Sbjct: 64 ARMEKLLNEWR-----SGLLHGGNASSEFPRISNGSNQSMETVFHHMRPALSLKGFTSHQ 118
Query: 253 VQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR 312
++++ +L LV + K ++ + V T SD DK+ L +E + ++ KR+
Sbjct: 119 LRVLNSVLRKHFGDLVYIHSNDKSSSSRDI-VVYTDSDSDKENLMKEAK----DERKRLA 173
Query: 313 --------GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP 364
GFR+VIDL+++ +K +V HN D ++SKF+ PLP +F+ S+ FP
Sbjct: 174 ERKIQSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINSHFP 233
Query: 365 QVIDVNYLLKDIGPV--KKMTNIS-------------------ATIAYLKNRFFAPIEME 403
++D LL ++ P+ ++M S ++ ++L+ R +E++
Sbjct: 234 YIVDTKILL-NVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEID 292
Query: 404 IPNQANENEGKIH--GHNVVKICQLFGKLCSILKITPDAIESSDDFLAS-AINRYANIFY 460
+N N G H G++ +F + C+ L DDF + + +Y N Y
Sbjct: 293 NVRCSNWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDDFAQNEKLEKYINRLY 352
Query: 461 SLPGSSQEPTNEEIRGWTNDKRKVS---CEDVVFLWGFRERISAGILKNMLQGSHEVFAE 517
L + + + D +VS E++V +W F ++ A +G E +
Sbjct: 353 -LSWTRXDIIDLRTGHSNADNWRVSKFKYENIVLIWNFPRKLKA-------RGIKECICK 404
Query: 518 AF------NVRMVDRSCAIVVFGKPGLSNTF---KNVMNSK----AVSGPLREMVSDG-L 563
AF +V VD S V+F L F K + S +V PL +++ G
Sbjct: 405 AFGSASVTSVYHVDDSAVFVLFKNSELVWDFLALKRQLESSDGPVSVLHPLSKILEGGNT 464
Query: 564 KAAGYETYQRVCSSGLWESALADALD------KTLASHNCLSEAAYETKQSEIYLSNELI 617
AA YE Y+ +CSS + E +D + +T + C +E E + + +++LI
Sbjct: 465 GAADYEAYKEICSSHVSEVMFSDQAETVGVKSRTRPNAQCETETREENTVTVTHKASDLI 524
Query: 618 N 618
+
Sbjct: 525 D 525
>gi|240254282|ref|NP_001077725.4| Poly(A)-specific ribonuclease PARN [Arabidopsis thaliana]
gi|78484002|dbj|BAE47490.1| polyA specific ribonuclease [Arabidopsis thaliana]
gi|332195191|gb|AEE33312.1| Poly(A)-specific ribonuclease PARN [Arabidopsis thaliana]
Length = 540
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 133/541 (24%), Positives = 243/541 (44%), Gaps = 83/541 (15%)
Query: 142 MAKEGFDFNTCIYDGISYLS--EAQESTVKVRM-GNPMAVDHATKSSSSPALSVADTVFI 198
+AK FDFNTCI++GISYLS E +E++ +++M +D + ++ + +AD +F
Sbjct: 4 LAKYQFDFNTCIHEGISYLSRREEEEASKRLKMLHGEDGIDSSGETEELKLVRLADVLFA 63
Query: 199 ERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQ------FGSRPSMTIDVCSERQ 252
R+ + W+ S + + +I G Q RP++++ + Q
Sbjct: 64 ARMEKLLNEWR-----SGLLHGGNASSEFPRISNGSNQSMETVFHHMRPALSLKGFTSHQ 118
Query: 253 VQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR 312
++++ +L LV + K ++ + V T SD DK+ L +E + ++ KR+
Sbjct: 119 LRVLNSVLRKHFGDLVYIHSNDKSSSSRDI-VVYTDSDSDKENLMKEAK----DERKRLA 173
Query: 313 --------GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP 364
GFR+VIDL+++ +K +V HN D ++SKF+ PLP +F+ S+ FP
Sbjct: 174 ERKIQSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINSHFP 233
Query: 365 QVIDVNYLLKDIGPV--KKMTNIS-------------------ATIAYLKNRFFAPIEME 403
++D LL ++ P+ ++M S ++ ++L+ R +E++
Sbjct: 234 YIVDTKILL-NVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEID 292
Query: 404 IPNQANENEGKIH--GHNVVKICQLFGKLCSILKITPDAIESSDDFLAS-AINRYANIFY 460
+N N G H G++ +F + C+ L DDF + + +Y N Y
Sbjct: 293 NVRCSNWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDDFAQNEKLEKYINRLY 352
Query: 461 SLPGSSQEPTNEEIRGWTNDKRKVS---CEDVVFLWGFRERISAGILKNMLQGSHEVFAE 517
L + + + D +VS E++V +W F ++ A +G E +
Sbjct: 353 -LSWTRGDIIDLRTGHSNADNWRVSKFKYENIVLIWNFPRKLKA-------RGIKECICK 404
Query: 518 AF------NVRMVDRSCAIVVFGKPGLSNTF---KNVMNSK----AVSGPLREMVSDG-L 563
AF +V VD S V+F L F K + S +V PL +++ G
Sbjct: 405 AFGSASVTSVYHVDDSAVFVLFKNSELVWDFLALKRQLESSDGPVSVLHPLSKILEGGNT 464
Query: 564 KAAGYETYQRVCSSGLWESALADALD------KTLASHNCLSEAAYETKQSEIYLSNELI 617
AA YE Y+ +CSS + E +D + +T + C +E E + + +++LI
Sbjct: 465 GAADYEAYKEICSSHVSEVMFSDQAETVGVKSRTRPNAQCETETREENTVTVTHKASDLI 524
Query: 618 N 618
+
Sbjct: 525 D 525
>gi|328767409|gb|EGF77459.1| hypothetical protein BATDEDRAFT_36029 [Batrachochytrium
dendrobatidis JAM81]
Length = 581
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/345 (27%), Positives = 161/345 (46%), Gaps = 42/345 (12%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++ ++NF E L ++ I ++DFIAV + TG +P R+S DTP+ YLK + AA
Sbjct: 2 EVVQSNFEEVLDSVREAIENADFIAVDTEFTGLGLTPNERLSLLDTPQERYLKHRSAARL 61
Query: 91 FQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F+ +Q + FK A + ++ P+NF+++PR K +F Q S L + GFD
Sbjct: 62 FEPIQIGLAAFKWDAEQGVYMSKPFNFNIYPRTGNKFFGLDRTFCVQISSLEFLEGNGFD 121
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN I +GI ++S +E+ ++ ++ + S + +T +++ V+ W
Sbjct: 122 FNKWIREGIPFVSITEEAAIRKKL-------ETINTESDIVIDEKNTEYVKDFIESVQKW 174
Query: 209 KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLV 268
C +D + S K ++ E P ++ V L K L
Sbjct: 175 --LCETTDESYSISTSNSFHKRLIHQEIKKQFPGQVSTESTKSGVNL--KRL-------- 222
Query: 269 PLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPL 328
QA + + ++ + LLK EL + GFR+VID++ A+QKP+
Sbjct: 223 -----------QANQKDSSHTESRQALLKAELDL--------LVGFRKVIDIMVAAQKPI 263
Query: 329 VAHN-SLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
V HN SL+ F IH +F+ PLP E+ + FP V D ++
Sbjct: 264 VGHNMSLDLFHIIH-RFIQPLPDTWEEYKDIVNRNFPSVFDTKFM 307
>gi|218195015|gb|EEC77442.1| hypothetical protein OsI_16244 [Oryza sativa Indica Group]
Length = 931
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 134/522 (25%), Positives = 240/522 (45%), Gaps = 72/522 (13%)
Query: 136 TSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRM----GNPMAV--DHATKSSSSPA 189
T+ + +AK FDFNTC +GI YLS QE ++ N + + + + +P
Sbjct: 359 TTSIDFLAKYQFDFNTCFREGIYYLSRTQEEEALQKLYTLHNNETSAYPNTSEEEEDAPL 418
Query: 190 LSVADTVFIERVRSRVKHWKNACTDS----DIKTEAALVTSLRKIVLGGEQFGSRPSMTI 245
S AD +F ER++ + W+N+ + D ++E + V F RP++ +
Sbjct: 419 KSAADVLFTERMKIKFNEWRNSIVSNQRVDDHRSENFKFADQFQTVF----FKMRPAIML 474
Query: 246 DVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDK---------DLL 296
+ + Q++L+ ++L LV + + G ++ R V T ++EDK DLL
Sbjct: 475 NGFTSHQLKLIRQILRTHFRDLVYVCTFLEDGVSEK-RVVYTDTNEDKISLMKNVREDLL 533
Query: 297 K-RELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEF 355
K RE + K G R VIDL+++ +K +V H+ D I+SKF+ PLP +M EF
Sbjct: 534 KSREAKV------KSAVGIRHVIDLLASERKLIVGHSCFLDIAQIYSKFVGPLPSSMEEF 587
Query: 356 ICSLRLAFPQVIDVNYLLKDIGPVK-----KMTNISATIAYLKNRFFAPIE-------ME 403
S+ FP + D +L+ V+ K ++S+ + L AP E +
Sbjct: 588 ALSINRMFPHMADTRHLMSVNDAVQYRMRHKSKSLSSAFSLLCPALHAPDEKSSTLPSVR 647
Query: 404 IPNQANE------NEGKIH--GHNVVKICQLFGKLCSILKITPDAIESSDDFLASAINRY 455
I +A+E G H G++ +F +LC+ I + + +D LA+ IN
Sbjct: 648 IEVEADETVLSCFTSGAKHEAGYDAFMTGCVFVQLCAYHGIKFEQLSPLED-LATNINLK 706
Query: 456 ANIFYSLP----GSSQEPTNEEIRGWTNDKRKVSC---EDVVFLWGFRERISAGILKNML 508
+I P G+ + + R KR+ ++V+ +WGF+ ++ +K+ +
Sbjct: 707 KHINLLPPCWNSGTVLDLSTGTERPDAGYKRRYPAAVYDNVILIWGFQSKVRPKDIKDCI 766
Query: 509 QGSHEVFAEA--FNVRMVDRSCAIVVFGKP-------GLSNTFKNVMNSKAVSGPLREMV 559
+VF A +V +D + +V F K L T ++ ++ +V PL ++
Sbjct: 767 ---CKVFGRASVTSVFPIDSTAVLVQFSKQESVNDFLDLKATLESADSAISVLHPLSTIL 823
Query: 560 SDG-LKAAGYETYQRVCSSGLWESALADALDKTLASHNCLSE 600
G +AA Y+TY+ +C S + + + AD + ++ N S+
Sbjct: 824 EGGKTRAAKYDTYRDICRSSVSKFSFADQAEAVCSTSNSESK 865
>gi|222629021|gb|EEE61153.1| hypothetical protein OsJ_15114 [Oryza sativa Japonica Group]
Length = 893
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 134/522 (25%), Positives = 240/522 (45%), Gaps = 72/522 (13%)
Query: 136 TSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRM----GNPMAV--DHATKSSSSPA 189
T+ + +AK FDFNTC +GI YLS QE ++ N + + + + +P
Sbjct: 321 TTSIDFLAKYQFDFNTCFREGIYYLSRTQEEEALQKLYTLHNNETSAYPNTSEEEEDAPL 380
Query: 190 LSVADTVFIERVRSRVKHWKNACTDS----DIKTEAALVTSLRKIVLGGEQFGSRPSMTI 245
S AD +F ER++ + W+N+ + D ++E + V F RP++ +
Sbjct: 381 KSAADVLFTERMKIKFNEWRNSIVSNQRVDDHRSENFKFADQFQTVF----FKMRPAIML 436
Query: 246 DVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDK---------DLL 296
+ + Q++L+ ++L LV + + G ++ R V T ++EDK DLL
Sbjct: 437 NGFTSHQLKLIRQILRTHFRDLVYVCTFLEDGVSEK-RVVYTDTNEDKISLMKNVREDLL 495
Query: 297 K-RELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEF 355
K RE + K G R VIDL+++ +K +V H+ D I+SKF+ PLP +M EF
Sbjct: 496 KSREAKV------KSAVGIRHVIDLLASERKLIVGHSCFLDIAQIYSKFVGPLPSSMEEF 549
Query: 356 ICSLRLAFPQVIDVNYLLKDIGPVK-----KMTNISATIAYLKNRFFAPIE-------ME 403
S+ FP + D +L+ V+ K ++S+ + L AP E +
Sbjct: 550 ALSINRMFPHMADTRHLMSVNDAVQYRMRHKSKSLSSAFSLLCPALHAPDEKSSTLPSVR 609
Query: 404 IPNQANE------NEGKIH--GHNVVKICQLFGKLCSILKITPDAIESSDDFLASAINRY 455
I +A+E G H G++ +F +LC+ I + + +D LA+ IN
Sbjct: 610 IEVEADETVLSCFTSGAKHEAGYDAFMTGCVFVQLCAYHGIKFEQLSPLED-LATNINLK 668
Query: 456 ANIFYSLP----GSSQEPTNEEIRGWTNDKRKVSC---EDVVFLWGFRERISAGILKNML 508
+I P G+ + + R KR+ ++V+ +WGF+ ++ +K+ +
Sbjct: 669 KHINLLPPCWNSGTVLDLSTGTERPDAGYKRRYPAAVYDNVILIWGFQSKVRPKDIKDCI 728
Query: 509 QGSHEVFAEA--FNVRMVDRSCAIVVFGKP-------GLSNTFKNVMNSKAVSGPLREMV 559
+VF A +V +D + +V F K L T ++ ++ +V PL ++
Sbjct: 729 ---CKVFGRASVTSVFPIDSTAVLVQFSKQESVNDFLDLKATLESADSAISVLHPLSTIL 785
Query: 560 SDG-LKAAGYETYQRVCSSGLWESALADALDKTLASHNCLSE 600
G +AA Y+TY+ +C S + + + AD + ++ N S+
Sbjct: 786 EGGKTRAAKYDTYRDICRSSVSKFSFADQAEAVCSTSNSESK 827
>gi|198418498|ref|XP_002129059.1| PREDICTED: similar to poly(A)-specific ribonuclease [Ciona
intestinalis]
Length = 642
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 106/410 (25%), Positives = 183/410 (44%), Gaps = 48/410 (11%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
IT+ NF E+L + I S FI + + TG ++ + ++++D+PE YLK E F
Sbjct: 3 ITRANFTETLPIVSKAIDESSFICIDGEFTG-LTNHRYNLTSYDSPEERYLKLHSNTENF 61
Query: 92 QILQFAICPF--KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
+LQF +C F K K +NF++FP G+P F+CQ S L + + FDF
Sbjct: 62 MLLQFGMCTFSWKEDEQKYQVDAFNFYIFPFRSSFPGVPDRIFSCQASSLDFLTLQDFDF 121
Query: 150 NTCIYDGISYLSEAQESTVKVRMGNPMAVDHAT-------------KSSSSPALSVADTV 196
N I +GI +L ++E++V+ + A +T SS P+ + D
Sbjct: 122 NKAIKEGIPFLRPSEEASVRSAIEEKQAYRQSTYKSPAKFDGVGRSPSSKGPSTPITDQK 181
Query: 197 ---FIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQV 253
F E+V +++K++ DS+I E + LRKI+ E + I V S
Sbjct: 182 TKDFTEKVVAKIKNFLENTEDSEIVLEPC-NSYLRKILF--ENIPAAFPGKILVESRTDE 238
Query: 254 QLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRG 313
Q + + +++ Q R + E+ +L + G
Sbjct: 239 QTHQRHI---------VVVRGASASLQKERNLQAKVKEESNL-------------EEAVG 276
Query: 314 FREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLL 373
F +++ +S SQK +V HN L D + +F+ PLP + EF + FP+++D L+
Sbjct: 277 FSKIVKKLSQSQKLIVGHNMLLDVFYTIQQFVCPLPDVLEEFKSLVGCVFPKLLDTK-LM 335
Query: 374 KDIGPVKKMTNISA---TIAYLKNRFFAPIEMEIPNQANENEGKIHGHNV 420
+ P + + + +A A L+ F P ++ +P + N K N+
Sbjct: 336 GSMLPFRDLLSTTALGDMNARLREPPFQPPDITVPGKYNVGSTKSQDSNL 385
>gi|148236825|ref|NP_001081143.1| poly(A)-specific ribonuclease PARN [Xenopus laevis]
gi|46329632|gb|AAH68919.1| Parn-A protein [Xenopus laevis]
Length = 631
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 101/384 (26%), Positives = 178/384 (46%), Gaps = 54/384 (14%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST----FDTPETAYLKAKF 86
+IT++NF ++L ++ I +DF+A+ + +G P VST FDTPE Y K K
Sbjct: 2 EITRSNFKDTLPKVYKAIEEADFLAIDGEFSGISDGP--SVSTLTNGFDTPEERYTKLKK 59
Query: 87 AAERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
+ F + QF +C F +K + +NF++FP+ P F CQ+S + +A
Sbjct: 60 HSMEFLLFQFGLCTFNYDNTEAKYLMKSFNFYIFPK-PFNRNSPDKKFVCQSSSIDFLAN 118
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRMGNPMA-------VDHATKSSSSPALSVADTV- 196
+GFDFN +GI YL++ +E ++ + + + + + + +SS +S+ D
Sbjct: 119 QGFDFNKVFRNGIPYLNQEEERVLRDQYEDRRSQSNGASTMSYISPNSSKTPVSIPDEQK 178
Query: 197 -FIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQL 255
FI++V RV+ + L EQ SM ++ C+ Q +L
Sbjct: 179 GFIDKVVERVEDF-----------------------LKNEQ----KSMNVEPCTGYQRKL 211
Query: 256 VLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSS---DEDKDLLKRELQTFEFEQNKRVR 312
+ + L + P I + ++ + S +E++ ++++ Q E E+
Sbjct: 212 IYQTL----NWKYPRGIHVETVESEKKERYIVISKVDEEERKRMEQQKQAKEREELDDAV 267
Query: 313 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
GF +I IS+S K +V HN L D +F LP +NEF FP+V+D L
Sbjct: 268 GFSRIIQAISSSGKLVVGHNMLLDVMHTIHQFFCQLPDELNEFKEVTNCVFPRVLDTK-L 326
Query: 373 LKDIGPVKKMTNISATIAYLKNRF 396
+ P K++ + ++A L+ R
Sbjct: 327 MASTNPFKEII-YNTSLAELEKRL 349
>gi|60390587|sp|Q90ZA1.1|PARN_XENLA RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Deadenylating nuclease; AltName: Full=Deadenylation
nuclease; AltName: Full=Polyadenylate-specific
ribonuclease; AltName: Full=parn-A
gi|14495249|gb|AAK64218.1|AF309688_1 poly(A)-specific ribonuclease [Xenopus laevis]
Length = 631
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 101/384 (26%), Positives = 178/384 (46%), Gaps = 54/384 (14%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST----FDTPETAYLKAKF 86
+IT++NF ++L ++ I +DF+A+ + +G P VST FDTPE Y K K
Sbjct: 2 EITRSNFKDTLPKVYKAIEEADFLAIDGEFSGISDGP--SVSTLTNGFDTPEERYTKLKK 59
Query: 87 AAERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
+ F + QF +C F +K + +NF++FP+ P F CQ+S + +A
Sbjct: 60 HSMEFLLFQFGLCTFNYDNTEAKYLMKSFNFYIFPK-PFNRNSPDKKFVCQSSSIDFLAN 118
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRMGNPMA-------VDHATKSSSSPALSVADTV- 196
+GFDFN +GI YL++ +E ++ + + + + + + +SS +S+ D
Sbjct: 119 QGFDFNKVFRNGIPYLNQEEERVLRDQYEDRRSQSNGASTMSYISPNSSKTPVSIPDEQK 178
Query: 197 -FIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQL 255
FI++V RV+ + L EQ SM ++ C+ Q +L
Sbjct: 179 GFIDKVVERVEDF-----------------------LKNEQ----KSMNVEPCTGYQRKL 211
Query: 256 VLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSS---DEDKDLLKRELQTFEFEQNKRVR 312
+ + L + P I + ++ + S +E++ ++++ Q E E+
Sbjct: 212 IYQTL----NWKYPRGIHVETVESEKKERYIVISKVDEEERKRMEQQKQAKEREELDDAV 267
Query: 313 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
GF +I IS+S K +V HN L D +F LP +NEF FP+V+D L
Sbjct: 268 GFSRIIQAISSSGKLVVGHNMLLDVMHTIHQFFCQLPDELNEFKEVTNCVFPRVLDTK-L 326
Query: 373 LKDIGPVKKMTNISATIAYLKNRF 396
+ P K++ + ++A L+ R
Sbjct: 327 MASTNPFKEII-YNTSLAELEKRL 349
>gi|49115955|gb|AAH73682.1| Unknown (protein for IMAGE:5572400), partial [Xenopus laevis]
Length = 517
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 178/383 (46%), Gaps = 54/383 (14%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST----FDTPETAYLKAKF 86
+IT++NF ++L ++ I +DF+A+ + +G P VST FDTPE Y K K
Sbjct: 2 EITRSNFKDTLPKVYKAIEEADFLAIDGEFSGISDGP--SVSTLTNGFDTPEERYTKLKK 59
Query: 87 AAERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
+ F + QF +C F +K + +NF++FP+ P F CQ+S + +A
Sbjct: 60 HSMEFLLFQFGLCTFNYDNTEAKYLMKSFNFYIFPK-PFNRNSPDKKFVCQSSSIDFLAN 118
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRMGNPMA-------VDHATKSSSSPALSVADTV- 196
+GFDFN +GI YL++ +E ++ + + + + + + +SS +S+ D
Sbjct: 119 QGFDFNKVFRNGIPYLNQEEERVLRDQYEDRRSQSNGASTMSYISPNSSKTPVSIPDEQK 178
Query: 197 -FIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQL 255
FI++V RV+ + L EQ SM ++ C+ Q +L
Sbjct: 179 GFIDKVVERVEDF-----------------------LKNEQ----KSMNVEPCTGYQRKL 211
Query: 256 VLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSS---DEDKDLLKRELQTFEFEQNKRVR 312
+ + L + P I + ++ + S +E++ ++++ Q E E+
Sbjct: 212 IYQTL----NWKYPRGIHVETVESEKKERYIVISKVDEEERKRMEQQKQAKEREELDDAV 267
Query: 313 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
GF +I IS+S K +V HN L D +F LP +NEF FP+V+D L
Sbjct: 268 GFSRIIQAISSSGKLVVGHNMLLDVMHTIHQFFCQLPDELNEFKEVTNCVFPRVLDTK-L 326
Query: 373 LKDIGPVKKMTNISATIAYLKNR 395
+ P K++ + ++A L+ R
Sbjct: 327 MASTNPFKEII-YNTSLAELEKR 348
>gi|47218930|emb|CAF98128.1| unnamed protein product [Tetraodon nigroviridis]
Length = 614
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 113/392 (28%), Positives = 176/392 (44%), Gaps = 59/392 (15%)
Query: 35 TNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAAERFQ 92
T+F E L+ + + I +DF+A+ + +G P T DTPE Y K K + F
Sbjct: 1 TDFKECLNTVYSAIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKHSMDFL 60
Query: 93 ILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
+ QF +C FK SK I P+NF++FP+ P F CQ+S + +A +GFDFN
Sbjct: 61 LFQFGVCTFKYDQTKSKYIIKPFNFYIFPK-PFNRTSPDKKFICQSSSIDFLASQGFDFN 119
Query: 151 TCIYDGISYLSEAQESTVKVR-----------MGNPMAVDHATKSSSSPALSVADTV--F 197
+GI YL++ +E+ ++ + +G P + + SS PA V D F
Sbjct: 120 KVFCNGIPYLNQEEEAQLREQTEERRNQHANGVGTPSYI--SPSSSKGPA-HVPDEHKDF 176
Query: 198 IERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVL 257
I +V RV+ AL S K S+ ++ C+ Q +L+
Sbjct: 177 INKVIERVE---------------ALFGSSEK------------SLDLEPCTGFQRKLIY 209
Query: 258 KMLE-DFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGF 314
+ L F L I + + R + S ++++ KRE Q E EQ + GF
Sbjct: 210 QTLNWKFPKGLHVETIETQ----KKERFIQVSKVDEEERKKREQQKLEREQEELNDAVGF 265
Query: 315 REVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLK 374
VI IS S K +V HN L D +F PLP + EF FP+++D L+
Sbjct: 266 SRVIHAISQSGKLVVGHNMLLDVMHTIHQFYCPLPEELQEFKEVTMCVFPRLLDTK-LMA 324
Query: 375 DIGPVKKM---TNISATIAYLKNRFFAPIEME 403
P K++ T+++ LK + F P ++E
Sbjct: 325 STQPFKELISNTSLAELEKQLKEKPFKPPQVE 356
>gi|410917870|ref|XP_003972409.1| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
PARN-like [Takifugu rubripes]
Length = 559
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 107/394 (27%), Positives = 181/394 (45%), Gaps = 56/394 (14%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
++T+ NF E L+ + + I +DF+A+ + +G P T DTPE Y K K +
Sbjct: 2 ELTRRNFKECLNTVYSAIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I P+NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDQTKSKYIIKPFNFYVFPKP-FNRTSPDKKFICQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVR----------MGNPMAVDHATKSSSSPA-LSVADT 195
FDFN +GI YL++ +E+ ++ + +G P + + SS PA +
Sbjct: 121 FDFNKVFCNGIPYLNQEEEAQLREQTEERRSQANGVGTPSYI--SPSSSKGPAHVPEEHK 178
Query: 196 VFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQL 255
FI +V +V+ AL + G+ ++ ++ C+ Q +L
Sbjct: 179 EFINKVIEKVE---------------ALFS------------GTEKTLVLEPCTGFQRKL 211
Query: 256 VLKMLEDFSDVLVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVR 312
+ + L + P + + TQ R + S ++++ +R+ Q E EQ +
Sbjct: 212 IYQTL----NWKFPKGLHVETIETQKKERFIQVSRVDEEERKRRKQQKLEREQEELNDAV 267
Query: 313 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
GF VI+ IS S K +V HN L D +F PLP ++ +F FP+++D L
Sbjct: 268 GFSRVINAISQSGKLVVGHNMLLDVMHTIYQFYCPLPEDLQDFKEVTMCVFPRLLDTK-L 326
Query: 373 LKDIGPVKKM---TNISATIAYLKNRFFAPIEME 403
+ P K+M T+++ LK F P ++E
Sbjct: 327 MASTQPFKEMISNTSLAELEKQLKESPFKPPQVE 360
>gi|197246532|gb|AAI69159.1| Unknown (protein for IMAGE:8898488) [Xenopus (Silurana) tropicalis]
Length = 525
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 177/383 (46%), Gaps = 54/383 (14%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST----FDTPETAYLKAKF 86
++T++NF ++L ++ I +DF+A+ + +G P VST FDTPE Y K K
Sbjct: 2 EMTRSNFKDNLPKVYKAIEEADFLAIDGEFSGISDGP--SVSTLTNGFDTPEERYTKLKK 59
Query: 87 AAERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
+ F + QF +C F +K +NF++FP+ P F CQ+S + +A
Sbjct: 60 HSMEFLLFQFGLCTFNYDNTEAKYFMKSFNFYIFPK-PFNRNSPDKKFVCQSSSIDFLAN 118
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRM-------GNPMAVDHATKSSSSPALSVADTV- 196
+GFDFN +GI YL++ +E ++ + A+ + + ++S +S+ D
Sbjct: 119 QGFDFNKVFRNGIPYLNQEEEKQLRDQYEERRSQSNGASAMSYVSPNASKTPVSIPDEQK 178
Query: 197 -FIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQL 255
FI++V RV+ + L EQ SM ++ C+ Q +L
Sbjct: 179 GFIDKVVERVEDF-----------------------LKNEQ----KSMDVEPCTGYQRKL 211
Query: 256 VLKMLEDFSDVLVPLIIPAKG-GGTQAVRAVLTS--SDEDKDLLKRELQTFEFEQNKRVR 312
+ + L + P I + + R ++ S +E++ ++++ Q E E+
Sbjct: 212 IYQTL----NWKYPRGIHVETLESEKKERYIVISKVDEEERKRMEQQKQAKEREELDDAV 267
Query: 313 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
GF +I IS+S K +V HN L D +F LP +NEF FP+V+D L
Sbjct: 268 GFSRIIQAISSSGKLVVGHNMLLDIMHTIHQFFCQLPDELNEFKEVTNCVFPRVLDTK-L 326
Query: 373 LKDIGPVKKMTNISATIAYLKNR 395
+ P K++ + ++A L+ R
Sbjct: 327 MASTNPFKEII-YNTSLAELEKR 348
>gi|115530723|emb|CAL49352.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Xenopus
(Silurana) tropicalis]
Length = 519
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 177/383 (46%), Gaps = 54/383 (14%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST----FDTPETAYLKAKF 86
++T++NF ++L ++ I +DF+A+ + +G P VST FDTPE Y K K
Sbjct: 2 EMTRSNFKDNLPKVYKAIEEADFLAIDGEFSGISDGP--SVSTLTNGFDTPEERYTKLKK 59
Query: 87 AAERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
+ F + QF +C F +K +NF++FP+ P F CQ+S + +A
Sbjct: 60 HSMEFLLFQFGLCTFNYDNTEAKYFMKSFNFYIFPK-PFNRNSPDKKFVCQSSSIDFLAN 118
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRM-------GNPMAVDHATKSSSSPALSVADTV- 196
+GFDFN +GI YL++ +E ++ + A+ + + ++S +S+ D
Sbjct: 119 QGFDFNKVFRNGIPYLNQEEEKQLRDQYEERRSQSNGASAMSYVSPNASKTPVSIPDEQK 178
Query: 197 -FIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQL 255
FI++V RV+ + L EQ SM ++ C+ Q +L
Sbjct: 179 GFIDKVVERVEDF-----------------------LKNEQ----KSMDVEPCTGYQRKL 211
Query: 256 VLKMLEDFSDVLVPLIIPAKG-GGTQAVRAVLTS--SDEDKDLLKRELQTFEFEQNKRVR 312
+ + L + P I + + R ++ S +E++ ++++ Q E E+
Sbjct: 212 IYQTL----NWKYPRGIHVETLESEKKERYIVISKVDEEERKRMEQQKQAKEREELDDAV 267
Query: 313 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
GF +I IS+S K +V HN L D +F LP +NEF FP+V+D L
Sbjct: 268 GFSRIIQAISSSGKLVVGHNMLLDIMHTIHQFFCQLPDELNEFKEVTNCVFPRVLDTK-L 326
Query: 373 LKDIGPVKKMTNISATIAYLKNR 395
+ P K++ + ++A L+ R
Sbjct: 327 MASTNPFKEII-YNTSLAELEKR 348
>gi|308235956|ref|NP_001184102.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Xenopus
(Silurana) tropicalis]
Length = 632
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 101/384 (26%), Positives = 177/384 (46%), Gaps = 54/384 (14%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST----FDTPETAYLKAKF 86
++T++NF ++L ++ I +DF+A+ + +G P VST FDTPE Y K K
Sbjct: 2 EMTRSNFKDNLPKVYKAIEEADFLAIDGEFSGISDGP--SVSTLTNGFDTPEERYTKLKK 59
Query: 87 AAERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
+ F + QF +C F +K +NF++FP+ P F CQ+S + +A
Sbjct: 60 HSMEFLLFQFGLCTFNYDNTEAKYFMKSFNFYIFPK-PFNRNSPDKKFVCQSSSIDFLAN 118
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRM-------GNPMAVDHATKSSSSPALSVADTV- 196
+GFDFN +GI YL++ +E ++ + A+ + + ++S +S+ D
Sbjct: 119 QGFDFNKVFRNGIPYLNQEEEKQLRDQYEERRSQSNGASAMSYVSPNASKTPVSIPDEQK 178
Query: 197 -FIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQL 255
FI++V RV+ + L EQ SM ++ C+ Q +L
Sbjct: 179 GFIDKVVERVEDF-----------------------LKNEQ----KSMDLEPCTGYQRKL 211
Query: 256 VLKMLEDFSDVLVPLIIPAKG-GGTQAVRAVLTS--SDEDKDLLKRELQTFEFEQNKRVR 312
+ + L + P I + + R ++ S +E++ ++++ Q E E+
Sbjct: 212 IYQTL----NWKYPRGIHVETLESEKKERYIVISKVDEEERKRMEQQKQAKEREELDDAV 267
Query: 313 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
GF +I IS+S K +V HN L D +F LP +NEF FP+V+D L
Sbjct: 268 GFSRIIQAISSSGKLVVGHNMLLDIMHTIHQFFCQLPDELNEFKEVTNCVFPRVLDTK-L 326
Query: 373 LKDIGPVKKMTNISATIAYLKNRF 396
+ P K++ + ++A L+ R
Sbjct: 327 MASTNPFKEII-YNTSLAELEKRL 349
>gi|325191502|emb|CCA26275.1| Poly(A)specific ribonuclease PARNlike protein putati [Albugo
laibachii Nc14]
Length = 713
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 101/377 (26%), Positives = 158/377 (41%), Gaps = 71/377 (18%)
Query: 32 ITKTNFNESLSEIKNHI--SSSDFIAVSLQNTG----SFSSPWHRVSTFDTPETAYLKAK 85
+T+ NF S ++K I S FIA+ + TG S W+ DT E Y K K
Sbjct: 50 VTRHNFETSFQQVKKSILSDSCKFIAIDTEFTGLCFKEASKEWY----LDTLEERYQKLK 105
Query: 86 FAAERFQILQFAICPFKLQASKVIAYP--------------------YNFHLFPRDELKM 125
E F + QF + + S V +NF+LFPR
Sbjct: 106 QTGENFLVSQFGLATVHVTPSAVNVKQENETTSNRASDHKYEFEIKVWNFYLFPR---PY 162
Query: 126 GMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPM-AVDHATKS 184
G F+CQ S L +A+ FDFN IYDGIS+ ++ S ++ R+ + +
Sbjct: 163 GHLDRRFSCQASCLQFLAEHDFDFNKFIYDGISFCKLSKVSMMQKRLEKQVEQYRQQQED 222
Query: 185 SSSPA---LSVADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRP 241
P+ L V F + VR V D E L+
Sbjct: 223 GCKPSVLQLDVQGKKFQQHVREMV---------DDFLKEETLIEG--------------- 258
Query: 242 SMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQA------VRAVLTSSDEDKDL 295
+DV + +L L+ + +++ I A A ++ L +S+E K L
Sbjct: 259 ---VDVQQQESKELFLEAKTSYQRMIIYQTIRAIDTNLHAKSVDEGIQIRLVTSEEKKQL 315
Query: 296 LKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEF 355
++ +L+ E N+ + GF VI ++ S KP+V HN+L DF +I+ +F PLP ++ EF
Sbjct: 316 MEEKLEQMRSETNEAI-GFSRVIQVLKDSNKPIVGHNALLDFIYIYHQFCQPLPNDLKEF 374
Query: 356 ICSLRLAFPQVIDVNYL 372
L +FP++ D Y+
Sbjct: 375 KKELTHSFPKIYDTKYM 391
>gi|321455833|gb|EFX66955.1| hypothetical protein DAPPUDRAFT_203845 [Daphnia pulex]
Length = 582
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 106/379 (27%), Positives = 172/379 (45%), Gaps = 34/379 (8%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
+TK+NF L I + + + FIA+ + TG +++S+ DTP Y K + F
Sbjct: 3 VTKSNFRSVLEGIDDELEKASFIAIDTEFTGLNDGGSNKLSSLDTPAERYKKVLNGSSEF 62
Query: 92 QILQF--AICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
++QF +I F+ + SK + YNF++FP + G+ F Q S L+ +A +GFDF
Sbjct: 63 LVVQFGLSIFTFEKKVSKYVNKTYNFYVFPHTSMG-GLCDKKFMSQASSLSFLATQGFDF 121
Query: 150 NTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWK 209
N I +GI YL+ +E VK+++ + K S+ V S+V
Sbjct: 122 NKLIKEGIPYLNLLEEEKVKLKL------EKRNKFSN--------------VDSKVPCHN 161
Query: 210 NACTDSDIKTEAALVTSLRKIVLGGEQFGS----RPSMTIDVCSERQVQLVLKMLEDFSD 265
N ++ + + + K+ E G+ P++ CS Q +L+ +
Sbjct: 162 NEISEIPPDQKGYVDHIVSKVTTFFESNGNDEEKSPAILEFQCSSLQSELIFSHVRTRYP 221
Query: 266 VLVPLIIPAK---GGGTQAVRAVLTSSDEDKDLL-KRELQTFEFEQNKRVRGFREVIDLI 321
L L + AK GG T V+ +S + +K+ + K+ L E + + GF EV+ I
Sbjct: 222 NL--LFVSAKKTCGGCTVTVKKAASSCNLEKESVDKKSLPAAEKPRIEDYMGFSEVVRKI 279
Query: 322 SASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKK 381
+ S K +V HN L D I +F PLP + EF FP+VID ++ P +
Sbjct: 280 TNSGKLVVGHNMLLDLCHILGQFCEPLPEDYEEFKAMTNTFFPRVIDTK-VMATTKPFRD 338
Query: 382 MTNISATIAYLKNRFFAPI 400
+ SA LK AP
Sbjct: 339 LLPNSALGPLLKALLKAPF 357
>gi|237649000|ref|NP_001153677.1| poly(A)-specific ribonuclease [Bombyx mori]
gi|224176033|dbj|BAH23570.1| similar to poly(A)-specific ribonuclease, PARN [Bombyx mori]
Length = 628
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 101/379 (26%), Positives = 160/379 (42%), Gaps = 46/379 (12%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++ + NF E+L + + +DF+ + + TG + VS FDTPE Y + +
Sbjct: 2 EVIRKNFKEALPLVAASVKKADFLVIDTEFTGIING--RDVSMFDTPEEYYKCTQRGSSE 59
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F ++QF +C F + + YNF+LFPR P F CQ+S L +A +GFD
Sbjct: 60 FLLIQFGLCAFHWNHKEKHYMNDAYNFYLFPRGS---PGPDRMFMCQSSSLDFLASQGFD 116
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVAD--TVFIERVRSRVK 206
FN I DGISY++ ++ ++ + T S ++ V D ++E + ++V
Sbjct: 117 FNKLIKDGISYMT----VPIECKLRENLTERQKTYSKGKDSIKVPDEHKAYVEDICNQVH 172
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLE-DFSD 265
+ G M ID C+ L+ + L F D
Sbjct: 173 QFLEE--------------------------GQLDEMEIDKCNSFVRLLLFQELRARFKD 206
Query: 266 -VLVPLIIPAKGGGTQAVRAVLTSSD-EDKDLLKRELQTFEFEQNKRVRGFREVIDLISA 323
+LV I V+ V + D ++ D LK+E + +FE GF +V +IS
Sbjct: 207 KILVETKILENKNRLLNVKRVKSQDDLKNHDALKKEREWEDFED---AVGFSKVARMISE 263
Query: 324 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMT 383
S+K +V HN L D + F PLP +F FP ++D Y + + P K
Sbjct: 264 SEKLVVGHNMLLDVMHTLNHFFQPLPAEYTQFKEFTHCMFPHILDTKY-MSSLPPFKDKV 322
Query: 384 NISATIAYLKNRFFAPIEM 402
N S L AP +
Sbjct: 323 NSSILKHLLATLSAAPFSL 341
>gi|348686050|gb|EGZ25865.1| hypothetical protein PHYSODRAFT_540459 [Phytophthora sojae]
Length = 606
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 96/386 (24%), Positives = 168/386 (43%), Gaps = 53/386 (13%)
Query: 32 ITKTNFNESLSEIKNHIS--SSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAE 89
+T+ NF + L++++ ++ + F+A+ + TG + + R DT E Y K K A E
Sbjct: 42 VTRHNFAKCLADLQKDLALPTCRFVAIDTEFTGLSPNEFEREQYLDTLEERYRKVKRAGE 101
Query: 90 RFQILQFAICPFKL-QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F + QF + L Q + +NF++FPR G F CQ S L +++ GFD
Sbjct: 102 SFLVTQFGLSTVHLDQKDQFQIKTWNFYVFPR---PYGSLDERFLCQASSLQFLSEHGFD 158
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN I DGI +++ A+ +K R+ +D TK + + LS F + V ++ W
Sbjct: 159 FNKFIGDGIPFVNLAKTPVMKKRLQR--RIDGLTKVNKNLQLSDDGVAFQKDVNEQLDQW 216
Query: 209 KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLV 268
+ GG + G + L++ F ++V
Sbjct: 217 ----------------------IAGGAKKGEK--------------LLVPTRNSFYSMVV 240
Query: 269 PLIIPAKG------GGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLIS 322
+ +K V S ++L+ +++ E ++ + GF +VI+ +S
Sbjct: 241 HETVRSKASYLYSEAAEGGVEVSYVSKKIKEELIAAKVKDMRREMDEAI-GFSKVIEALS 299
Query: 323 ASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNY--LLKDIGPVK 380
S+ P+V HN+L DF ++ +F PLP + EF L FP + D + L +G
Sbjct: 300 ESKLPVVGHNALLDFVYVFHQFYKPLPETLAEFKTQLLGLFPTIYDTKHVTLRSPLGDKL 359
Query: 381 KMTNISATIAYLKNRFFAPIEMEIPN 406
K T +S+ Y++ E IP+
Sbjct: 360 KSTGLSSLFEYMRENVKPEPESLIPS 385
>gi|348540666|ref|XP_003457808.1| PREDICTED: poly(A)-specific ribonuclease PARN [Oreochromis
niloticus]
Length = 679
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/364 (27%), Positives = 166/364 (45%), Gaps = 31/364 (8%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
++T+ N+ + L+ + + I +DF+A+ + +G P T DTPE Y K K +
Sbjct: 2 EVTRKNYKDCLNTVYSAIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I P+NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDQAKSKYITKPFNFYIFPK-PFNRTSPDIKFICQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN GI YL++ +E+ ++ + HA + +S + + V K
Sbjct: 121 FDFNKVFCHGIPYLNQEEEAQLREQT-EERRNQHANGVGTPSFISPSSSKGSSHVPEEHK 179
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLE-DFSD 265
+ N + K EA L S + ++ ++ C+ Q +L+ + L F
Sbjct: 180 DFINKVVE---KVEALLGNSEK-------------TLDLEPCTGFQRKLIYQTLNWKFPK 223
Query: 266 VLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISA 323
L + + + R + S ++++ +RE Q E EQ + GF VI IS
Sbjct: 224 GLHVETVETE----KKERYIQISKVDEEERKRREQQKLEREQEELNDAVGFSRVIHAISK 279
Query: 324 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM- 382
S K +V HN L D +F PLP ++ +F FP+++D L+ P K++
Sbjct: 280 SGKLVVGHNMLLDVMHTIHQFYCPLPEDLQDFKEVTMCVFPRLLDTK-LMASTQPFKELI 338
Query: 383 TNIS 386
TN S
Sbjct: 339 TNTS 342
>gi|149725913|ref|XP_001490195.1| PREDICTED: poly(A)-specific ribonuclease PARN-like isoform 1 [Equus
caballus]
Length = 637
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 100/386 (25%), Positives = 172/386 (44%), Gaps = 39/386 (10%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPPVTALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCAFKYDYTDSKYITKSFNFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSS--SPALSVADTVFIERVRSR 204
FDFN +GI YL++ +E ++ + + + S SP S E +
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGAGALSYVSPNTSKCPVTIPEDQKKF 180
Query: 205 VKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFS 264
+ H ++ + ++ E ++ ++ C+ Q +L+ + L
Sbjct: 181 IDH---------------VIEKIEDLLQSEED----KNLDLEPCTGFQRKLIYQTL---- 217
Query: 265 DVLVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLI 321
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I
Sbjct: 218 SWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAI 277
Query: 322 SASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKK 381
+ S K ++ HN L D +F PLP ++NEF FP+++D L+ P K
Sbjct: 278 ANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMASTQPFKD 336
Query: 382 MTNISATIAYLKNRF----FAPIEME 403
+ N + ++A L+ R F P ++E
Sbjct: 337 IIN-NTSLAELEKRLKETPFNPPKVE 361
>gi|440902237|gb|ELR53050.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Bos grunniens mutus]
Length = 531
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 95/352 (26%), Positives = 155/352 (44%), Gaps = 50/352 (14%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAA 88
I F +SL ++ + +DF+ + ++ TG + S P ++S FD P YLK + +
Sbjct: 3 IGADEFEQSLPLLQELVLGADFVGLDIEFTGLRSNLSGP-QQISLFDLPSEWYLKTRQSV 61
Query: 89 ERFQILQFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKE 145
++F I Q + F + +++K +A+ NF LFP G+ F+ Q S + + +
Sbjct: 62 QQFTICQIGLSVFSSIEGESNKYVAHSCNFFLFPT---TFGVLDSEFSFQASSVQFLNQY 118
Query: 146 GFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRV 205
GFD+N + +GI Y++E QE +K H + + S D I+ V V
Sbjct: 119 GFDYNKFLKNGIPYMNEEQEKKIK----------HNILTGNWKVRSSLDKDQIKVVIDEV 168
Query: 206 KHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVL-KMLEDFS 264
W + + D T + G + F +VQLVL K L D
Sbjct: 169 TRWLDLAEEGDWMTLPGIA--------GFQAF--------------EVQLVLRKALPDIW 206
Query: 265 DVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISAS 324
VL + K TQ + T+S + + K ++ RGF ++ +
Sbjct: 207 TVLRDQGVIVKKVSTQHRWYLETTSCDRESCWKEKILL-------SARGFSVFFQMLVKA 259
Query: 325 QKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
+KPLV HN + D +H KF PLP +EF ++ FP +ID + KDI
Sbjct: 260 RKPLVGHNMMMDLLHLHEKFFRPLPETYDEFKLNIHNLFPVLIDTKNVTKDI 311
>gi|155371965|ref|NP_001094588.1| poly(A)-specific ribonuclease PARN [Bos taurus]
gi|223590122|sp|P69341.2|PARN_BOVIN RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Deadenylating nuclease; AltName: Full=Deadenylation
nuclease; AltName: Full=Polyadenylate-specific
ribonuclease
gi|151556271|gb|AAI50016.1| PARN protein [Bos taurus]
gi|296473404|tpg|DAA15519.1| TPA: poly(A)-specific ribonuclease PARN [Bos taurus]
Length = 638
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 101/393 (25%), Positives = 179/393 (45%), Gaps = 53/393 (13%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPM-------AVDHATKSSSSPALSVAD--TVF 197
FDFN +GI YL++ +E ++ + A+ + + ++S +++ D F
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQSNGAGALSYTSPNTSKCPVTIPDDQKKF 180
Query: 198 IERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVL 257
I++V +++ +L E+ ++ ++ C+ Q +L+
Sbjct: 181 IDQVVEKIED-----------------------LLQSEE---NKNLDLEPCTGFQRKLIY 214
Query: 258 KMLEDFSDVLVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGF 314
+ L P I + T+ R ++ S ++++ +RE Q EQ + GF
Sbjct: 215 QTL----SWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGF 270
Query: 315 REVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLK 374
VI I+ S K ++ HN L D +F PLP ++NEF FP+++D L+
Sbjct: 271 SRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMA 329
Query: 375 DIGPVKKMTNISATIAYLKNRF----FAPIEME 403
P K + N + ++A L+ R F P ++E
Sbjct: 330 STQPFKDIIN-NTSLAELEKRLKETPFNPPKVE 361
>gi|427786977|gb|JAA58940.1| Putative polya-specific ribonuclease parn [Rhipicephalus
pulchellus]
Length = 637
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 112/437 (25%), Positives = 195/437 (44%), Gaps = 47/437 (10%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTG-SFSSPWHRVSTFDTPETAYLKAKFAAE 89
++T NF E +K + ++ F+A+ + TG H +DTPE Y K + ++
Sbjct: 2 EVTAENFQEQFGVLKAALENASFVAIDCEFTGLELERSTH---AYDTPEERYRKLRESSL 58
Query: 90 RFQILQFAICPFKLQASKVIAYPY---NFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F ++Q +C F+ K Y Y NF++ P+ +K G P F CQ S L +++ G
Sbjct: 59 DFLVVQVGVCVFQHDKEKR-GYKYKAFNFYVCPKQTVK-GAPDRMFRCQASSLQFLSQHG 116
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHAT--KSSSSPALSVA---------DT 195
FDFN G+SYL A+E+T ++ ++ HA K SP + DT
Sbjct: 117 FDFNKLFSHGVSYL-RAEEAT---QLSQALSERHAQQLKEVGSPNNGPSKISKVEVPKDT 172
Query: 196 V-FIERVRSRVKHWKNAC--TDSDIKTEAALVTSLRK-------IVLGGEQFGSRPSMTI 245
FI+ V +V+ + ++ T+ D++ E + ++ K + ++ +
Sbjct: 173 QQFIDDVLDKVQQFLDSASGTEVDMEDEDGVGSAASKQDSPEDLCMREASPKKDGSTLHL 232
Query: 246 DVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEF 305
C+ + +L+ + + V L + G + +T + E++ Q E
Sbjct: 233 SECNGFKRKLIYQEVNARFGDKVQLNTESDSDGMLHIAVRITGTPEEQRARLELRQKKER 292
Query: 306 EQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQ 365
E + GF V++L+++S K +V HN L D + S+F+ LP + NEF +R AFP
Sbjct: 293 EDLELAHGFGRVLELLASSGKLIVGHNMLLDIMHLLSQFVDDLPKDYNEFKSMVRAAFPC 352
Query: 366 VIDVNYLLKD--IGPVKKMTNISATIAYLKNR--FFAPIEMEIPNQANENEGKIH----- 416
++D L D I T + + L+NR P+E E + N+ K H
Sbjct: 353 LVDTKVLASDDAIKDSFVTTALELLLKQLRNRPSCVPPVESENGYGYSLNQTKYHEAGYD 412
Query: 417 ----GHNVVKICQLFGK 429
G ++ +CQ GK
Sbjct: 413 AYVTGMCLLGLCQQLGK 429
>gi|417403544|gb|JAA48572.1| Putative polya-specific exoribonuclease parn [Desmodus rotundus]
Length = 638
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 100/384 (26%), Positives = 176/384 (45%), Gaps = 35/384 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF+A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFLAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYINSKYIIKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN +GI YL++ +E ++ + + +S+ + ALS V
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYD-----EKRLQSNGAGALSY------------VS 163
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 266
+ C + + + + + + + Q ++ ++ C+ Q +L+ + L
Sbjct: 164 PNTSKCPVTVPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTL----SW 219
Query: 267 LVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISA 323
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I+
Sbjct: 220 KYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIAN 279
Query: 324 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMT 383
S K ++ HN L D +F PLP ++NEF FP+++D L+ P K +
Sbjct: 280 SGKLVIGHNMLLDVMHTVHQFCCPLPEDLNEFKEMTTCVFPRLLDTK-LMASTQPFKDII 338
Query: 384 NISATIAYLKNRF----FAPIEME 403
N + ++A L+ R F P ++E
Sbjct: 339 N-NTSLAELEKRLKETPFNPPKVE 361
>gi|332245327|ref|XP_003271812.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 isoform 2 [Nomascus
leucogenys]
Length = 531
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 153/347 (44%), Gaps = 50/347 (14%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F ESL ++ + +DF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 8 FEESLPLLQELVQEADFVGLDMEFTGLRSNLSGP-QQISLFDLPSEWYLKTRQSVQQFTI 66
Query: 94 LQFAICPFKL---QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F +A+K IA+ NF+LFP G+ F+ Q S + + + GF++N
Sbjct: 67 CQIGLSVFSAVEGEANKYIAHSCNFYLFPT---TFGILDSEFSFQASSVQFLNQYGFNYN 123
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ +GI Y++E QE ++ H + + S D I+ V V W +
Sbjct: 124 KFLKNGIPYMNEEQEKKIR----------HDILTGNWRVRSTPDKDQIKVVIDEVTRWLD 173
Query: 211 ACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVP 269
+ D T + G + F +VQLVL+ L + VL
Sbjct: 174 LAKEGDWMTLPGIT--------GFQAF--------------EVQLVLRQALPNIWTVLKD 211
Query: 270 LIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLV 329
+ K Q R + +S + + K + RGF ++ +QKPLV
Sbjct: 212 EGVVVKKVSKQHRRYLQNTSCDRESCWKENILL-------SARGFSVFFQMLVKAQKPLV 264
Query: 330 AHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
HN + D +H KF PLP + ++F ++ FP +ID + KDI
Sbjct: 265 GHNMMMDLLHLHEKFFRPLPESYDQFKQNIHRLFPVLIDTKSVTKDI 311
>gi|296219599|ref|XP_002755955.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Callithrix
jacchus]
Length = 639
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 99/384 (25%), Positives = 177/384 (46%), Gaps = 35/384 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYIMKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN +GI YL++ +E ++ + + ++++ + ALS V
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYD-----EKRSQANGAGALSY------------VS 163
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 266
+ C + + + + + + + Q ++ ++ C+ Q +L+ + L
Sbjct: 164 PNTSKCPVTVPEDQKKFIDEVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTL----SW 219
Query: 267 LVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISA 323
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I+
Sbjct: 220 KYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIAN 279
Query: 324 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMT 383
S K ++ HN L D +F PLP ++NEF FP+++D L+ P K +
Sbjct: 280 SGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMASTRPFKDII 338
Query: 384 NISATIAYLKNRF----FAPIEME 403
N + ++A L+ R F+P ++E
Sbjct: 339 N-NTSLAELEKRLKETPFSPPKVE 361
>gi|395515097|ref|XP_003761743.1| PREDICTED: poly(A)-specific ribonuclease PARN [Sarcophilus
harrisii]
Length = 667
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 99/381 (25%), Positives = 173/381 (45%), Gaps = 39/381 (10%)
Query: 36 NFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAAERFQI 93
+F +L ++ I +DF+A+ + +G P T FDTPE Y K K + F +
Sbjct: 25 DFKNNLHKVYQAIEEADFLAIDGEFSGISDGPSVTALTNGFDTPEERYHKLKKHSMDFLL 84
Query: 94 LQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNT 151
QF +C FK + SK I +NF++FP+ P F CQ+S + +A +GFDFN
Sbjct: 85 FQFGLCTFKYDSTDSKYIMKSFNFYVFPKP-FSRTSPDVKFVCQSSSIDFLANQGFDFNK 143
Query: 152 CIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSS--SPALSVADTVFIERVRSRVKHWK 209
+GI YL++ +E ++ + + + + S SP S V E + ++
Sbjct: 144 VFRNGIPYLNQEEERQLREQYDEKRSQSNGAGALSYVSPNASKCPVVIPEDQKKFIE--- 200
Query: 210 NACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVP 269
+V + ++ E ++ ++ C+ Q +L+ + L P
Sbjct: 201 ------------KVVEKIEDLIQNEE----NKNLDLEPCTGFQRKLIYQTL----SWKYP 240
Query: 270 LIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISASQK 326
I + T+ R ++ S ++++ +RE Q + EQ + GF VI I+ S K
Sbjct: 241 KGIHVETLETEKKERYIVISKVDEEERKRREQQKYAKEQEELNDAVGFSRVIHAIANSGK 300
Query: 327 PLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNIS 386
++ HN L D +F PLP ++NEF FP+++D L+ P K + N +
Sbjct: 301 LVIGHNMLLDVMHTIHQFYCPLPEDLNEFKEVTTCVFPRLLDTK-LMASTQPFKDIIN-N 358
Query: 387 ATIAYLKNRF----FAPIEME 403
++A L+ R F P ++E
Sbjct: 359 TSLAELEKRLKEAPFNPPKVE 379
>gi|440801121|gb|ELR22146.1| ribonuclease, putative [Acanthamoeba castellanii str. Neff]
Length = 546
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 160/348 (45%), Gaps = 39/348 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++TK+NF L ++K I++SDF++ L+ TG + D E Y K K +
Sbjct: 2 EVTKSNFAAVLPDVKEAIAASDFLSFDLEFTGLTLGGYLDNHPVDLLEERYKKLKENSSA 61
Query: 91 FQILQFAICPFKLQAS--KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F I QF + F A+ K +A +NF+LFPR G FTCQ + L + + FD
Sbjct: 62 FTITQFGLSAFTWDATENKYVARTWNFYLFPR---PYGWCDRRFTCQAASLQFLLEHKFD 118
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMA--VDHATKSSSSPALSV--ADTVFIERVRSR 204
FN IY+G+ YLS E ++ ++ + +D A++ + + D F+ +++
Sbjct: 119 FNKFIYEGVGYLSRYVEGKMRPQVEEEIQKLLDAASQEALPDIVPTNPRDVEFVAGIKAS 178
Query: 205 VKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFS 264
+ W S+ A + LR++V E G+ P + ++ +VQ
Sbjct: 179 IDGWLQG-DGSEPLLLIAPNSFLRRLVY-QEVRGNYPELNVE-----KVQ---------- 221
Query: 265 DVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISAS 324
GT ++ S+E+K + EL + ++ + GFR+V + +SAS
Sbjct: 222 -------------GTWDNMSISRMSEEEKARRRAELVQQKRDEFEAAIGFRQVWEAMSAS 268
Query: 325 QKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
+KP+V HN L D + + F LP + F ++ FP + D ++
Sbjct: 269 RKPVVGHNLLLDLLYSYFHFEDRLPSSFRNFKVAINKVFPTIFDTKHI 316
>gi|355562180|gb|EHH18812.1| hypothetical protein EGK_15481, partial [Macaca mulatta]
gi|355749010|gb|EHH53493.1| hypothetical protein EGM_14142, partial [Macaca fascicularis]
Length = 530
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 154/347 (44%), Gaps = 50/347 (14%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F ESL ++ + +DF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 8 FEESLPLLQELVQEADFVGLDIEFTGLRSNLSGP-QQISLFDLPSEWYLKTRQSVQQFTI 66
Query: 94 LQFAICPFKL---QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F +A+K IA+ NF LFP G+ F+ Q S + + + GF++N
Sbjct: 67 CQIGLSVFSAIEGEANKYIAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFNYN 123
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ +GI Y++E QE ++ H + + S D I+ V +V W +
Sbjct: 124 KFLKNGIPYMNEEQEKKIR----------HDILTGNWRVRSSPDKDQIKAVIDKVTRWLD 173
Query: 211 ACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVP 269
+ D T + G + F +VQLVL+ L D VL
Sbjct: 174 LAKEGDWMTLPGIA--------GFQAF--------------EVQLVLRQALPDIWTVLKD 211
Query: 270 LIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLV 329
+ K Q R L ++ D++ +E RGF ++ +QKPLV
Sbjct: 212 EGVVVKKVSKQH-RWYLQNTSCDRESCWKEKILLS------ARGFSVFFQMLVKAQKPLV 264
Query: 330 AHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
HN + D +H KF PLP + ++F ++ FP +ID + KDI
Sbjct: 265 GHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKNVTKDI 311
>gi|73958883|ref|XP_536966.2| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Canis
lupus familiaris]
Length = 638
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 100/384 (26%), Positives = 173/384 (45%), Gaps = 35/384 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYEAIKEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN +GI YL+ +E ++ + + +S+ + ALS V
Sbjct: 121 FDFNKVFRNGIPYLNHEEERQLREQYD-----EKRLQSNGAGALSY------------VS 163
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 266
+ C + + + + + + + Q ++ ++ C+ Q +L+ + L
Sbjct: 164 PNTSKCPVTIPEDQKKFIDQVVEKIENLLQSEESKNLDLEPCTGFQRKLIYQTL----SW 219
Query: 267 LVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISA 323
P I T+ R ++ S ++++ +RE Q EQ + GF VI I+
Sbjct: 220 KYPKGIHVDTLETEKKERYIVISKVDEEERKRREQQKLAKEQEELNDAVGFSRVIHAIAN 279
Query: 324 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMT 383
S K ++ HN L D +F PLP ++NEF FP+++D L+ P K +
Sbjct: 280 SGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMASTQPFKDII 338
Query: 384 NISATIAYLKNRF----FAPIEME 403
N + ++A L+ R F P ++E
Sbjct: 339 N-NTSLAELEKRLKETPFNPPKVE 361
>gi|301765382|ref|XP_002918111.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Ailuropoda
melanoleuca]
Length = 638
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 101/386 (26%), Positives = 170/386 (44%), Gaps = 39/386 (10%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYKKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCAFKYDHTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDH--ATKSSSSPALSVADTVFIERVRSR 204
FDFN +GI YL++ +E ++ + + T S SP S E +
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGAGTLSYVSPNTSKCPVTIPEDQKKF 180
Query: 205 VKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFS 264
+ +V + ++ E ++ ++ C+ Q +L+ + L
Sbjct: 181 IDQ---------------VVEKIEDLLQSEEN----KNLDLEPCTGFQRKLIYQTL---- 217
Query: 265 DVLVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLI 321
P I T+ R ++ S ++++ +RE Q EQ + GF VI I
Sbjct: 218 SWKYPKGIHVDTLETEKKERYIVISKVDEEERKRREQQKLAKEQEELNDAVGFSRVIHAI 277
Query: 322 SASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKK 381
+ S K ++ HN L D +F PLP ++NEF FP+++D L+ P K
Sbjct: 278 ANSGKLIIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMASTQPFKD 336
Query: 382 MTNISATIAYLKNRF----FAPIEME 403
+ N + ++A L+ R F P ++E
Sbjct: 337 IIN-NTSLAELEKRLKETPFNPPKVE 361
>gi|402868642|ref|XP_003898404.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Papio anubis]
Length = 531
Score = 112 bits (280), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 154/347 (44%), Gaps = 50/347 (14%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F ESL ++ + +DF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 8 FEESLPLLQELVQEADFVGLDIEFTGLRSNLSGP-QQISLFDLPSEWYLKTRQSVQQFTI 66
Query: 94 LQFAICPFKL---QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F +A+K IA+ NF LFP G+ F+ Q S + + + GF++N
Sbjct: 67 CQIGLSVFSAIEGEANKYIAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFNYN 123
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ +GI Y++E QE ++ H + + S D I+ V +V W +
Sbjct: 124 KFLKNGIPYMNEEQEKKIR----------HDILTGNWRVRSSPDKDQIKAVIDKVTRWLD 173
Query: 211 ACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVP 269
+ D T + G + F +VQLVL+ L D VL
Sbjct: 174 LAKEGDWMTLPGIA--------GFQAF--------------EVQLVLRQALPDIWTVLKD 211
Query: 270 LIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLV 329
+ K Q R L ++ D++ +E RGF ++ +QKPLV
Sbjct: 212 EGVVVKKVSKQH-RWYLQNTSCDRESCWKEKILLS------ARGFSVFFQMLVKAQKPLV 264
Query: 330 AHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
HN + D +H KF PLP + ++F ++ FP +ID + KDI
Sbjct: 265 GHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKNVTKDI 311
>gi|357629823|gb|EHJ78364.1| putative poly [Danaus plexippus]
Length = 616
Score = 112 bits (280), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 157/344 (45%), Gaps = 35/344 (10%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T+ NF E L +++ I ++DF+A+ + TG S VS FD+P Y
Sbjct: 2 EVTRKNFKEVLPLVRDSIQAADFLAIDTEFTGLMSG--RDVSMFDSPPEYYATLLNGTAD 59
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F ++QF +C F + + + YNF++FPR P F CQ+S L +A + FD
Sbjct: 60 FLLIQFGLCTFYWDEKEKQYMNDAYNFYVFPRGR---PGPDRLFMCQSSSLDFLASQDFD 116
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN I +GISY++E E+ ++ + + + V I+ + +V+H+
Sbjct: 117 FNKLIREGISYMTEPTEAKLREELTEKQK--KSVNEKDCIPIPEEHKVQIDNICKKVRHF 174
Query: 209 KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLV 268
+ + +++ + +R+++ ++ G R + V S KMLE+ + VL
Sbjct: 175 IDFENEDEMEIDRC-NAFIRRLLF--QELGKRFHNEVFVES--------KMLENKNRVLK 223
Query: 269 PLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPL 328
+ K G + R V ++E +EQ + GF V +IS S K +
Sbjct: 224 --VSKIKCGSDRMNRDVQKKNEE-------------WEQFEDAVGFSRVARMISQSGKLV 268
Query: 329 VAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
+ HN L D + F PLP + N F FP+++D Y+
Sbjct: 269 IGHNMLLDVMHTLNHFFQPLPTDYNTFKEFTHCMFPRILDTKYM 312
>gi|410985167|ref|XP_003998895.1| PREDICTED: poly(A)-specific ribonuclease PARN [Felis catus]
Length = 638
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 101/386 (26%), Positives = 171/386 (44%), Gaps = 39/386 (10%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLQKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDH--ATKSSSSPALSVADTVFIERVRSR 204
FDFN +GI YL++ +E ++ + + T S SP S E +
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGAGTLSYVSPNASKCPVTIPEDQKKF 180
Query: 205 VKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFS 264
+ +V + ++ E ++ ++ C+ Q +L+ + L
Sbjct: 181 IDQ---------------VVEKIEDLLQSEEN----KNLDLEPCTGFQRKLIYQTL---- 217
Query: 265 DVLVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLI 321
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I
Sbjct: 218 SWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAI 277
Query: 322 SASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKK 381
+ S K ++ HN L D +F PLP ++NEF FP+++D L+ P K
Sbjct: 278 ANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMASTQPFKD 336
Query: 382 MTNISATIAYLKNRF----FAPIEME 403
+ N + ++A L+ R F P ++E
Sbjct: 337 IIN-NTSLAELEKRLKETPFNPPKVE 361
>gi|403284980|ref|XP_003933822.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Saimiri boliviensis
boliviensis]
Length = 531
Score = 112 bits (279), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 154/347 (44%), Gaps = 50/347 (14%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F ESL ++ + SDF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 8 FEESLPLLQELVQESDFVGLDIEFTGLRSNLSGP-QQISLFDLPSEWYLKTRQSVQQFTI 66
Query: 94 LQFAICPFKL---QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F +A+K +A+ NF LFP G+ F+ Q S + + + GF++N
Sbjct: 67 CQIGLSMFSAIEGEANKYVAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFNYN 123
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ +GI Y++E QE ++ H S + S D I+ V V W +
Sbjct: 124 KFLKNGIPYMNEEQEKKIR----------HDILSGNWRVRSSLDKDQIKVVIDEVTRWLD 173
Query: 211 ACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVP 269
+ D T + G + F +VQLVL+ L + VL
Sbjct: 174 LAKEGDWMTLPGIA--------GFQAF--------------EVQLVLRQALHNIWTVLKD 211
Query: 270 LIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLV 329
+ K Q R L S+ D++ +E +GF ++ +QKPLV
Sbjct: 212 DGVVVKKVSKQH-RWYLQSTSCDRESCWKENILLS------AKGFSVFFHMLVKAQKPLV 264
Query: 330 AHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
HN + D ++H KF PLP + ++F ++ FP +ID + KDI
Sbjct: 265 GHNMMMDLLYLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKNVTKDI 311
>gi|345784478|ref|XP_541182.3| PREDICTED: poly(A)-specific ribonuclease (PARN)-like domain
containing 1 [Canis lupus familiaris]
Length = 531
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 154/347 (44%), Gaps = 50/347 (14%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F +SL ++ + +DF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 8 FEQSLPLLQELVLGADFVGLDIEFTGLRSNLSRP-QQISLFDLPSEWYLKTRHSVQQFTI 66
Query: 94 LQFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F + +++K +A+ NF LFP G+ F+ Q S + + + GFD+N
Sbjct: 67 CQIGLSVFSSIEGESNKYVAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFDYN 123
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ +GI Y++E QE +K H + + S D I+ V V W +
Sbjct: 124 KFLKNGIPYMNEEQEKKIK----------HNILTGNWRVRSSLDKDQIKVVIDEVTRWLD 173
Query: 211 ACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVP 269
+ D T + G + F +VQLVL+ L D VL
Sbjct: 174 LAEEGDWMTLPGIA--------GFQAF--------------EVQLVLRQALPDIWTVLRD 211
Query: 270 LIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLV 329
I K Q R L ++ D++ +E RGF ++ +QKPLV
Sbjct: 212 QGIIVKKVSKQH-RWYLENTSCDRESCWKEKILLS------ARGFSVFFQMLVKAQKPLV 264
Query: 330 AHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
HN + D +H KF PLP + ++F ++ FP +ID + KDI
Sbjct: 265 GHNMMMDLLHLHEKFFRPLPESYDQFKLNIHNLFPILIDTKNVTKDI 311
>gi|380813232|gb|AFE78490.1| poly(A)-specific ribonuclease PARN isoform 1 [Macaca mulatta]
gi|383411569|gb|AFH28998.1| poly(A)-specific ribonuclease PARN isoform 1 [Macaca mulatta]
gi|384943224|gb|AFI35217.1| poly(A)-specific ribonuclease PARN isoform 1 [Macaca mulatta]
Length = 639
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 98/384 (25%), Positives = 177/384 (46%), Gaps = 35/384 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN +GI YL++ +E ++ + + ++++ + ALS V
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYD-----EKRSQANGAGALSY------------VS 163
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 266
+ C + + + + + + + Q ++ ++ C+ Q +L+ + L
Sbjct: 164 PNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTL----SW 219
Query: 267 LVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISA 323
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I+
Sbjct: 220 KYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIAN 279
Query: 324 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMT 383
S K ++ HN L D +F PLP +++EF FP+++D L+ P K +
Sbjct: 280 SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQPFKDII 338
Query: 384 NISATIAYLKNRF----FAPIEME 403
N + ++A L+ R F+P ++E
Sbjct: 339 N-NTSLAELEKRLKEIPFSPPKVE 361
>gi|301111876|ref|XP_002905017.1| Poly(A)-specific ribonuclease PARN-like protein [Phytophthora
infestans T30-4]
gi|262095347|gb|EEY53399.1| Poly(A)-specific ribonuclease PARN-like protein [Phytophthora
infestans T30-4]
Length = 589
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 100/389 (25%), Positives = 165/389 (42%), Gaps = 59/389 (15%)
Query: 32 ITKTNFNESLSEIKN--HISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAE 89
+T+ NF++ L +++ + + +A+ + TG + R DT E Y K K A E
Sbjct: 33 VTRHNFSKHLKDLQKDLQLPTCRLVAIDTEFTGLSPNELEREQYLDTLEERYHKVKRAGE 92
Query: 90 RFQILQFAICPFKL-QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F I QF + L Q + +NF++FPR G F CQ S L +++ GFD
Sbjct: 93 SFLITQFGLSIVHLDQKDQFHIKTWNFYVFPR---PYGSLDERFLCQASSLQFLSEHGFD 149
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN I DGI +++ A+ +K R+ +D TK + + LS F + V+ ++ W
Sbjct: 150 FNKFIGDGIPFVNLAKTPAMKKRLQR--RIDGLTKVNKNLQLSDDGMAFQKDVKQQLAKW 207
Query: 209 KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLV 268
+ GG + G + L + F ++V
Sbjct: 208 ----------------------IAGGAKKGEK--------------LFVPTRNSFYSMIV 231
Query: 269 PLIIPAKG---------GGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVID 319
AK GG Q DE L+ +++ E ++ + GF +VI+
Sbjct: 232 HETARAKASYLYSEAADGGVQVSYLSKKMKDE---LIAAKVKEMRKEMDEAI-GFSKVIE 287
Query: 320 LISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNY--LLKDIG 377
+S S+ P+V HN+L DF ++ +F PLP + EF L FP + D + L +G
Sbjct: 288 ALSESKLPVVGHNALLDFVYVFHQFCKPLPETLAEFKTQLLELFPTIYDTKHVTLRSPLG 347
Query: 378 PVKKMTNISATIAYLKNRFFAPIEMEIPN 406
K T +S+ Y++ E IP+
Sbjct: 348 EKLKSTGLSSLFEYMRENVKPEPESLIPS 376
>gi|114610057|ref|XP_001151114.1| PREDICTED: poly(A)-specific ribonuclease (PARN)-like domain
containing 1 isoform 3 [Pan troglodytes]
gi|397471750|ref|XP_003807445.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 isoform 2 [Pan paniscus]
Length = 531
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 97/349 (27%), Positives = 157/349 (44%), Gaps = 54/349 (15%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F ESL ++ + +DF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 8 FEESLPLLQELVQEADFVGLDIEFTGLRSNLSGP-QQISLFDLPSEWYLKTRQSVQQFTI 66
Query: 94 LQFAICPFKL---QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F +A+K IA+ NF+LFP G+ F+ Q S + + + GF++N
Sbjct: 67 CQIGLSVFSAIEGEANKYIAHSCNFYLFPT---TFGILDSEFSFQASSVQFLNQYGFNYN 123
Query: 151 TCIYDGISYLSEAQESTVK--VRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
+ +GI Y++E QE ++ + GN + SSP D I+ V +V W
Sbjct: 124 KFLKNGIPYMNEEQEKKIRHDILTGN-------WRVRSSP-----DKDQIKVVIDQVTRW 171
Query: 209 KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVL 267
+ D T + G + F +VQLVL+ L + VL
Sbjct: 172 LELAKEGDWMTLPGIT--------GFQAF--------------EVQLVLRQALPNIWTVL 209
Query: 268 VPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKP 327
+ K Q R L ++ D++ +E RGF ++ +QKP
Sbjct: 210 KDEGVVVKKVSKQH-RWYLQNTSCDRESCWKENILLS------ARGFSVFFQMLVKAQKP 262
Query: 328 LVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
LV HN + D +H KF PLP + N+F ++ FP +ID + KDI
Sbjct: 263 LVGHNMMMDLLHLHEKFFRPLPESYNQFKQNIHSLFPVLIDTKSVTKDI 311
>gi|344292088|ref|XP_003417760.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Loxodonta
africana]
Length = 638
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 100/384 (26%), Positives = 173/384 (45%), Gaps = 35/384 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDHTESKYITKSFNFYVFPKP-FNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN +GI YL++ +E ++ + + +S+ + ALS V
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYD-----EKRLQSNGAGALSY------------VS 163
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 266
+ C + + + + + + Q ++ ++ C+ Q +L+ + L
Sbjct: 164 PNTSKCPVMVPEEQKKFIDQVVEKIEDLLQSDENKNLDLEPCTGFQRKLIYQTL----SW 219
Query: 267 LVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTF--EFEQNKRVRGFREVIDLISA 323
P I + T+ R ++ S ++++ +RE Q E E GF VI I+
Sbjct: 220 KYPKGIHIETLETEKKERYIVISKVDEEERKRREQQKHAKELEGLNDAVGFSRVIHAIAN 279
Query: 324 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMT 383
S K ++ HN L D +F PLP ++NEF FP+++D L+ P K +
Sbjct: 280 SGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMASTQPFKDII 338
Query: 384 NISATIAYLKNRF----FAPIEME 403
N + ++A L+ R F P ++E
Sbjct: 339 N-NTSLAELEKRLKETPFNPPKVE 361
>gi|343962531|dbj|BAK62853.1| poly(A)-specific ribonuclease [Pan troglodytes]
Length = 531
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 97/349 (27%), Positives = 157/349 (44%), Gaps = 54/349 (15%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F ESL ++ + +DF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 8 FEESLPLLQELVQEADFVGLDIEFTGLRSNLSGP-QQISLFDLPSEWYLKTRQSVQQFTI 66
Query: 94 LQFAICPFKL---QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F +A+K IA+ NF+LFP G+ F+ Q S + + + GF++N
Sbjct: 67 CQIGLSVFSAIEGEANKYIAHSCNFYLFPT---TFGILDSEFSFQASSVQFLNQYGFNYN 123
Query: 151 TCIYDGISYLSEAQESTVK--VRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
+ +GI Y++E QE ++ + GN + SSP D I+ V +V W
Sbjct: 124 KFLKNGIPYMNEEQEKKIRHDILTGN-------WRVRSSP-----DKDQIKVVIDQVTRW 171
Query: 209 KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVL 267
+ D T + G + F +VQLVL+ L + VL
Sbjct: 172 LELAKEGDWMTLPGIT--------GFQAF--------------EVQLVLRQALPNIWTVL 209
Query: 268 VPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKP 327
+ K Q R L ++ D++ +E RGF ++ +QKP
Sbjct: 210 KDEGVVVKKVSKQH-RWYLQNTSCDRESCWKENILLS------ARGFSVFFQMLVKAQKP 262
Query: 328 LVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
LV HN + D +H KF PLP + N+F ++ FP +ID + KDI
Sbjct: 263 LVGHNMMMDLLHLHEKFFRPLPESYNQFKQNIHSLFPVLIDTKSVTKDI 311
>gi|426235017|ref|XP_004011487.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Ovis aries]
Length = 529
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 96/352 (27%), Positives = 156/352 (44%), Gaps = 50/352 (14%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAA 88
I F +SL ++ + +DF+ + ++ TG + S P ++S FD P YLK + +
Sbjct: 3 IGADEFEQSLPLLQELVLGADFVGLDIEFTGLRSNLSGP-QQISLFDLPSEWYLKTRQSI 61
Query: 89 ERFQILQFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKE 145
++F I Q + F + +++K IA+ NF LFP G+ F+ Q S + + +
Sbjct: 62 QQFTICQIGLSVFSSIEGESNKYIAHSCNFFLFPT---TFGVLDSEFSFQASSVQFLNQY 118
Query: 146 GFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRV 205
GFD+N + +GI Y++E QE +K H + + S D I+ V V
Sbjct: 119 GFDYNKFLKNGIPYMNEEQEKKIK----------HNILTGNWKVRSSLDKDQIKVVIDEV 168
Query: 206 KHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVL-KMLEDFS 264
W + + D T + G + F +VQLVL K L +
Sbjct: 169 TRWLDLAEEGDWMTLPGIA--------GFQAF--------------EVQLVLRKALPEIW 206
Query: 265 DVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISAS 324
VL + K TQ R L ++ D++ +E RGF ++ +
Sbjct: 207 TVLRDQGVIVKKVSTQH-RWYLENTSCDRESCWKEKILLS------ARGFSVFFQMLVKA 259
Query: 325 QKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
+KPLV HN + D +H KF PLP + +EF ++ FP +ID + KDI
Sbjct: 260 RKPLVGHNMMMDLLHLHEKFFRPLPESYDEFKLNIHNLFPVLIDTKNVTKDI 311
>gi|291390633|ref|XP_002711808.1| PREDICTED: poly(A)-specific ribonuclease (deadenylation nuclease)
[Oryctolagus cuniculus]
Length = 638
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 100/386 (25%), Positives = 172/386 (44%), Gaps = 39/386 (10%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDHTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDH--ATKSSSSPALSVADTVFIERVRSR 204
FDFN +GI YL + +E ++ + + + T + SP S E +
Sbjct: 121 FDFNKVFCNGIPYLIQEEERQLREQYDEKRSQTNGAGTLAYVSPNASKHPVTIPEDQKKF 180
Query: 205 VKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFS 264
+ +V + ++ E ++ ++ C+ Q +L+ + L
Sbjct: 181 IDQ---------------VVEKIEDLLQSEE----NKNLDLEPCTGFQRKLIYQTL---- 217
Query: 265 DVLVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLI 321
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I
Sbjct: 218 SRKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQRLAKEQEELNDAVGFSRVIHAI 277
Query: 322 SASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKK 381
+ S K ++ HN L D +F PLP ++NEF FP+++D L+ P K
Sbjct: 278 ANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTSCVFPRLLDTK-LMASTQPFKD 336
Query: 382 MTNISATIAYLKNRF----FAPIEME 403
+ N + ++A L+ R F+P ++E
Sbjct: 337 IIN-NTSLAELEKRLKETPFSPPKVE 361
>gi|410217846|gb|JAA06142.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Pan
troglodytes]
gi|410256666|gb|JAA16300.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Pan
troglodytes]
gi|410287506|gb|JAA22353.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Pan
troglodytes]
gi|410350583|gb|JAA41895.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Pan
troglodytes]
gi|410350585|gb|JAA41896.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Pan
troglodytes]
Length = 639
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 98/384 (25%), Positives = 176/384 (45%), Gaps = 35/384 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKFDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN +GI YL++ +E ++ + + ++++ + ALS V
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYD-----EKRSQANGAGALSY------------VS 163
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 266
+ C + + + + + + + Q ++ ++ C+ Q +L+ + L
Sbjct: 164 PNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTL----SW 219
Query: 267 LVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISA 323
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I+
Sbjct: 220 KYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIAN 279
Query: 324 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMT 383
S K ++ HN L D +F PLP +++EF FP+++D L+ P K +
Sbjct: 280 SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQPFKDII 338
Query: 384 NISATIAYLKNRF----FAPIEME 403
N + ++A L+ R F P ++E
Sbjct: 339 N-NTSLAELEKRLKETPFNPPKVE 361
>gi|334333099|ref|XP_001375777.2| PREDICTED: poly(A)-specific ribonuclease PARN [Monodelphis
domestica]
Length = 709
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 98/386 (25%), Positives = 175/386 (45%), Gaps = 39/386 (10%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
++ ++NF +L ++ I +DF+A+ + +G P T FDTPE Y K K +
Sbjct: 2 EMIRSNFKNNLHKVYQAIEEADFLAIDGEFSGISDGPSVTALTNGFDTPEERYHKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK + SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDSTDSKYIMKSFNFYVFPKP-FSRTSPDVKFVCQSSSIDFLANQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSS--SPALSVADTVFIERVRSR 204
FDFN +GI YL++ +E ++ + + + + S SP S + E +
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQSNGAGALSYISPNASKCPVIIPEDQKKF 180
Query: 205 VKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFS 264
+ +V + ++ E ++ ++ C+ Q +L+ + L
Sbjct: 181 ID---------------KVVEKIEDLIQNEEN----KNLDLEPCTGFQRKLIYQTL---- 217
Query: 265 DVLVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLI 321
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I
Sbjct: 218 SWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAI 277
Query: 322 SASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKK 381
+ S K ++ HN L D +F PLP +++EF FP+++D L+ P K
Sbjct: 278 ANSGKLVIGHNMLLDVMHTIHQFYCPLPEDLSEFKEVTTCVFPRLLDTK-LMASTQPFKD 336
Query: 382 MTNISATIAYLKNRF----FAPIEME 403
+ N + ++A L+ R F P ++E
Sbjct: 337 IIN-NTSLAELEKRLKEAPFNPPKVE 361
>gi|348584110|ref|XP_003477815.1| PREDICTED: poly(A)-specific ribonuclease PARN-like isoform 1 [Cavia
porcellus]
Length = 637
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 99/384 (25%), Positives = 176/384 (45%), Gaps = 35/384 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I + NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRNNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ L P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDCTDSKYIMKSFNFYVFPK-PLNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN +GI YL++ +E ++ + + ++++ + AL+ V
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYD-----EKRSQANGAGALAY------------VS 163
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 266
+ C + + + + + + + Q + ++ ++ C+ Q +L+ + L
Sbjct: 164 PNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEANKTLDLEPCTGFQRKLIYQTL----SW 219
Query: 267 LVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISA 323
P I + T+ R ++ S +++ +RE Q EQ + GF VI I+
Sbjct: 220 KYPKGIHIETLETEKKERYIVISKVNEEERKRREQQKHAKEQEELNDAVGFSRVIHAIAN 279
Query: 324 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMT 383
S K +V HN L D +F PLP ++ EF FP+++D L+ P K +
Sbjct: 280 SGKLVVGHNMLLDVMHTIHQFYCPLPVDLKEFKEMTTCVFPRLLDTK-LMASTQPFKDII 338
Query: 384 NISATIAYLKNRF----FAPIEME 403
N + ++A L+ R F+P ++E
Sbjct: 339 N-NTSLAELEKRLKETPFSPPKVE 361
>gi|327287978|ref|XP_003228705.1| PREDICTED: poly(A)-specific ribonuclease PARN-like, partial [Anolis
carolinensis]
Length = 593
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 104/394 (26%), Positives = 177/394 (44%), Gaps = 54/394 (13%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
++T++NF ++L+++ I +DF+A+ + +G P T FDTPE Y K K +
Sbjct: 2 EVTRSNFKDNLNKVYAAIEEADFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFK--LQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK L SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDLAESKYIMKSFNFYIFPK-PFNRTSPDVKFVCQSSSIDFLANQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKV----------RMGNPMAVDHATKSSSSPALSVADTV 196
FDFN +GI YL++ +E ++ R+G+ +S +
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLQEQYEEKRSQAGRVGSLSFASPNAQSKCPVTIPEDQKT 180
Query: 197 FIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLV 256
FI++V RV D+ ++ E + S+ ++ C+ Q +L+
Sbjct: 181 FIDKVVDRV--------DTLLQNEESA------------------SLELEPCTGFQRKLI 214
Query: 257 LKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKR---ELQTFEFEQNKRVRG 313
+ L P I + T+ + S D++ KR + Q E E+ K G
Sbjct: 215 YQTL----SWKYPKGIHVETLETEKKERYIIVSKVDEEERKRREQQRQAKEQEELKDAVG 270
Query: 314 FREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLL 373
F VI ++ S K +V HN L D +F PLP ++ EF FP+++D L+
Sbjct: 271 FSRVIHAMANSGKLVVGHNMLLDVMHTIHQFYCPLPEDLGEFKELTTCVFPRLLDTK-LM 329
Query: 374 KDIGPVKKMTNISATIAYLKNRF----FAPIEME 403
P K + + + ++A L+ R F+P +E
Sbjct: 330 ATTQPFKDLIS-NTSLAELEKRVKETPFSPPNVE 362
>gi|4505611|ref|NP_002573.1| poly(A)-specific ribonuclease PARN isoform 1 [Homo sapiens]
gi|60390262|sp|O95453.1|PARN_HUMAN RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Deadenylating nuclease; AltName: Full=Deadenylation
nuclease; AltName: Full=Polyadenylate-specific
ribonuclease
gi|3776076|emb|CAA06683.1| poly(A)-specific ribonuclease [Homo sapiens]
gi|29477165|gb|AAH50029.1| PARN protein [Homo sapiens]
gi|119605516|gb|EAW85110.1| poly(A)-specific ribonuclease (deadenylation nuclease), isoform
CRA_a [Homo sapiens]
gi|189054660|dbj|BAG37510.1| unnamed protein product [Homo sapiens]
gi|325463607|gb|ADZ15574.1| poly(A)-specific ribonuclease (deadenylation nuclease) [synthetic
construct]
Length = 639
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 98/384 (25%), Positives = 176/384 (45%), Gaps = 35/384 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN +GI YL++ +E ++ + + ++++ + ALS V
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYD-----EKRSQANGAGALSY------------VS 163
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 266
+ C + + + + + + + Q ++ ++ C+ Q +L+ + L
Sbjct: 164 PNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTL----SW 219
Query: 267 LVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISA 323
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I+
Sbjct: 220 KYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIAN 279
Query: 324 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMT 383
S K ++ HN L D +F PLP +++EF FP+++D L+ P K +
Sbjct: 280 SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQPFKDII 338
Query: 384 NISATIAYLKNRF----FAPIEME 403
N + ++A L+ R F P ++E
Sbjct: 339 N-NTSLAELEKRLKETPFNPPKVE 361
>gi|332845316|ref|XP_510832.3| PREDICTED: poly(A)-specific ribonuclease PARN isoform 3 [Pan
troglodytes]
Length = 639
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 98/384 (25%), Positives = 176/384 (45%), Gaps = 35/384 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN +GI YL++ +E ++ + + ++++ + ALS V
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYD-----EKRSQANGAGALSY------------VS 163
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 266
+ C + + + + + + + Q ++ ++ C+ Q +L+ + L
Sbjct: 164 PNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTL----SW 219
Query: 267 LVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISA 323
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I+
Sbjct: 220 KYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIAN 279
Query: 324 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMT 383
S K ++ HN L D +F PLP +++EF FP+++D L+ P K +
Sbjct: 280 SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQPFKDII 338
Query: 384 NISATIAYLKNRF----FAPIEME 403
N + ++A L+ R F P ++E
Sbjct: 339 N-NTSLAELEKRLKETPFNPPKVE 361
>gi|197102834|ref|NP_001125357.1| poly(A)-specific ribonuclease PARN [Pongo abelii]
gi|60390294|sp|Q5RC51.1|PARN_PONAB RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Polyadenylate-specific ribonuclease
gi|55727812|emb|CAH90659.1| hypothetical protein [Pongo abelii]
Length = 639
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 98/384 (25%), Positives = 177/384 (46%), Gaps = 35/384 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKCNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSPPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN +GI YL++ +E ++ + + ++++ + ALS V
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYD-----EKRSQANGAGALSY------------VS 163
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 266
+ C + + + + + + + Q ++ ++ C+ Q +L+ + L
Sbjct: 164 PNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTL----SW 219
Query: 267 LVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISA 323
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I+
Sbjct: 220 KYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIAN 279
Query: 324 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMT 383
S K ++ HN L D +F PLP +++EF FP+++D L+ P K +
Sbjct: 280 SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQPFKDII 338
Query: 384 NISATIAYLKNRF----FAPIEME 403
N + ++A L+ R F+P ++E
Sbjct: 339 N-NTSLAELEKRLKETPFSPPKVE 361
>gi|85544056|pdb|2A1R|A Chain A, Crystal Structure Of Parn Nuclease Domain
gi|85544057|pdb|2A1R|B Chain B, Crystal Structure Of Parn Nuclease Domain
gi|85544060|pdb|2A1S|A Chain A, Crystal Structure Of Native Parn Nuclease Domain
gi|85544061|pdb|2A1S|B Chain B, Crystal Structure Of Native Parn Nuclease Domain
gi|85544062|pdb|2A1S|C Chain C, Crystal Structure Of Native Parn Nuclease Domain
gi|85544063|pdb|2A1S|D Chain D, Crystal Structure Of Native Parn Nuclease Domain
Length = 430
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 98/384 (25%), Positives = 176/384 (45%), Gaps = 35/384 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN +GI YL++ +E ++ + + ++++ + ALS V
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYD-----EKRSQANGAGALSY------------VS 163
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 266
+ C + + + + + + + Q ++ ++ C+ Q +L+ + L
Sbjct: 164 PNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTL----SW 219
Query: 267 LVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISA 323
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I+
Sbjct: 220 KYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIAN 279
Query: 324 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMT 383
S K ++ HN L D +F PLP +++EF FP+++D L+ P K +
Sbjct: 280 SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQPFKDII 338
Query: 384 NISATIAYLKNRF----FAPIEME 403
N + ++A L+ R F P ++E
Sbjct: 339 N-NTSLAELEKRLKETPFNPPKVE 361
>gi|397525565|ref|XP_003832732.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Pan
paniscus]
Length = 639
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 98/384 (25%), Positives = 176/384 (45%), Gaps = 35/384 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYIMKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN +GI YL++ +E ++ + + ++++ + ALS V
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYD-----EKRSQANGAGALSY------------VS 163
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 266
+ C + + + + + + + Q ++ ++ C+ Q +L+ + L
Sbjct: 164 PNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTL----SW 219
Query: 267 LVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISA 323
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I+
Sbjct: 220 KYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIAN 279
Query: 324 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMT 383
S K ++ HN L D +F PLP +++EF FP+++D L+ P K +
Sbjct: 280 SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQPFKDII 338
Query: 384 NISATIAYLKNRF----FAPIEME 403
N + ++A L+ R F P ++E
Sbjct: 339 N-NTSLAELEKRLKETPFNPPKVE 361
>gi|432108569|gb|ELK33278.1| Poly(A)-specific ribonuclease PARN [Myotis davidii]
Length = 604
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 99/379 (26%), Positives = 171/379 (45%), Gaps = 35/379 (9%)
Query: 36 NFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAAERFQI 93
+F L ++ I +DF A+ + +G P T FDTPE Y K K + F +
Sbjct: 108 DFKSHLHKVYQAIEEADFFAIDGEFSGISDGPSVTTLTNGFDTPEERYQKLKKHSMDFLL 167
Query: 94 LQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNT 151
QF +C FK SK I +NF++FP+ P F CQ+S + +A +GFDFN
Sbjct: 168 FQFGLCAFKYDCIHSKYIIKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQGFDFNK 226
Query: 152 CIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNA 211
+GI YL++ +E ++ + + +S+ + ALS V +
Sbjct: 227 VFRNGIPYLNQEEERQLREQYD-----EKRLQSNGAGALSY------------VSPNTSK 269
Query: 212 CTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLI 271
C + + + + + + + Q ++ +D C+ Q +L+ + L + P
Sbjct: 270 CPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLDPCTGFQRKLIYQTL----NWKYPKG 325
Query: 272 IPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISASQKPL 328
I + T+ R ++ S ++++ +RE Q EQ + GF VI I+ S K +
Sbjct: 326 IHVETLETEKKERYIVVSKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLI 385
Query: 329 VAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISAT 388
+ HN L D +F PLP ++NEF FP+++D L+ P K + N + +
Sbjct: 386 IGHNMLLDVMHTVHQFCCPLPEDLNEFKEMTTSVFPKLLDTK-LMASTQPFKDIIN-NTS 443
Query: 389 IAYLKNRF----FAPIEME 403
+A L+ R F P ++E
Sbjct: 444 LAELEKRLKETPFNPPKVE 462
>gi|332240351|ref|XP_003269351.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Nomascus
leucogenys]
Length = 639
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 98/384 (25%), Positives = 175/384 (45%), Gaps = 35/384 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN +GI YL++ +E ++ + + ++++ + ALS V
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYD-----EKRSQANGAGALSY------------VS 163
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 266
+ C + + + + + + Q ++ ++ C+ Q +L+ + L
Sbjct: 164 PNTSKCPVPIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTL----SW 219
Query: 267 LVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISA 323
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I+
Sbjct: 220 KYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIAN 279
Query: 324 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMT 383
S K ++ HN L D +F PLP +++EF FP+++D L+ P K +
Sbjct: 280 SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQPFKDII 338
Query: 384 NISATIAYLKNRF----FAPIEME 403
N + ++A L+ R F P ++E
Sbjct: 339 N-NTSLAELEKRLKETPFNPPKVE 361
>gi|426355066|ref|XP_004044958.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Gorilla gorilla gorilla]
Length = 513
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 154/347 (44%), Gaps = 50/347 (14%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F ESL ++ + +DF+ + ++ TG + S P ++S FD P YLK + + ++F +
Sbjct: 8 FEESLPLLQELVQEADFVGLDIEFTGLRSNLSGP-QQISLFDLPSEWYLKTRQSVQQFTV 66
Query: 94 LQFAICPFKL---QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F +A+K IA+ NF+LFP G+ F+ Q S + + + GF++N
Sbjct: 67 CQIGLSVFSAIEGEANKYIAHSCNFYLFPT---TFGILDSEFSFQASSVQFLNQYGFNYN 123
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ +GI Y++E QE ++ H + + S D I+ V V W +
Sbjct: 124 KFLKNGIPYMNEEQEKKIR----------HDILTGNWRVRSSPDKHQIKVVIDEVTRWLD 173
Query: 211 ACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVP 269
+ D T + G + F +VQLVL+ L + VL
Sbjct: 174 LAKEGDWMTLPGIT--------GFQAF--------------EVQLVLRQALPNIWTVLKD 211
Query: 270 LIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLV 329
+ K Q R L ++ D++ +E RGF ++ +QKPLV
Sbjct: 212 EGVVVKKVSKQH-RWYLQNTSCDRESCWKENILLS------ARGFSVFFQMLVKAQKPLV 264
Query: 330 AHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
HN + D +H KF PLP + ++F ++ FP +ID + KDI
Sbjct: 265 GHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKSVTKDI 311
>gi|390462231|ref|XP_002806785.2| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
PARN-like domain-containing protein 1 [Callithrix
jacchus]
Length = 510
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 93/347 (26%), Positives = 154/347 (44%), Gaps = 51/347 (14%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F ESL ++ + SDF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 8 FEESLPLLQELLHESDFVGLDIEFTGLRSNLSGP--QISLFDLPSEWYLKTRQSVQQFTI 65
Query: 94 LQFAICPFKL---QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F + +K +A+ NF LFP G+ F+ Q S + + + GF++N
Sbjct: 66 CQIGLSMFSALEGEENKYVAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFNYN 122
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ +GI Y++E QE ++ H S + S D I+ V V W +
Sbjct: 123 KFLKNGIPYMNEEQEKKIR----------HDILSGNWKVRSSLDKDQIKVVIDEVTRWLD 172
Query: 211 ACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVP 269
+ D T +V G + + +VQLVL+ L + VL
Sbjct: 173 LAKEGDWMTLPGIV--------GFQAY--------------EVQLVLRQALHNIWTVLKD 210
Query: 270 LIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLV 329
+ K Q R L S+ D++ +E +GF ++ +QKPLV
Sbjct: 211 DGVIVKKVSKQH-RWYLQSTSCDRESCWKENILLS------AKGFSVFFHMLVKAQKPLV 263
Query: 330 AHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
HN + D ++H KF PLP + ++F ++ FP +ID + KDI
Sbjct: 264 GHNMMMDLLYLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKNVTKDI 310
>gi|21751916|dbj|BAC04070.1| unnamed protein product [Homo sapiens]
gi|119567997|gb|EAW47612.1| poly(A)-specific ribonuclease (PARN)-like domain containing 1,
isoform CRA_a [Homo sapiens]
Length = 531
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 95/349 (27%), Positives = 156/349 (44%), Gaps = 54/349 (15%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F ESL ++ + +DF+ + ++ TG + S P ++S FD P YLK + + ++F +
Sbjct: 8 FEESLPLLQELVQEADFVGLDIEFTGLRSNLSGP-QQISLFDLPSEWYLKTRQSVQQFTV 66
Query: 94 LQFAICPFKL---QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F +A+K IA+ NF+LFP G+ F+ Q S + + + GF++N
Sbjct: 67 CQIGLSVFSAIEGEANKYIAHSCNFYLFPT---TFGILDSEFSFQASSVQFLNQYGFNYN 123
Query: 151 TCIYDGISYLSEAQESTVK--VRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
+ +GI Y++E QE ++ + GN + SSP D I+ V V W
Sbjct: 124 KFLKNGIPYMNEEQEKKIRHDILTGN-------WRVRSSP-----DKDQIKVVIDEVTRW 171
Query: 209 KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVL 267
+ D T + G + F +VQLVL+ L + VL
Sbjct: 172 LELAKEGDWMTLPGIT--------GFQAF--------------EVQLVLRQALPNIWTVL 209
Query: 268 VPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKP 327
+ K Q R L ++ D++ +E RGF ++ +QKP
Sbjct: 210 KDEGVVVKKVSKQH-RWYLQNTSCDRESCWKENILLS------ARGFSVFFQMLVKAQKP 262
Query: 328 LVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
LV HN + D +H KF PLP + ++F ++ FP +ID + KDI
Sbjct: 263 LVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKSVTKDI 311
>gi|440896814|gb|ELR48641.1| Poly(A)-specific ribonuclease PARN, partial [Bos grunniens mutus]
Length = 617
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 99/388 (25%), Positives = 175/388 (45%), Gaps = 53/388 (13%)
Query: 36 NFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAAERFQI 93
+F +L ++ I +DF A+ + +G P T FDTPE Y K K + F +
Sbjct: 2 DFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHSMDFLL 61
Query: 94 LQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNT 151
QF +C FK SK I +NF++FP+ P F CQ+S + +A +GFDFN
Sbjct: 62 FQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQGFDFNK 120
Query: 152 CIYDGISYLSEAQESTVKVRMGNPM-------AVDHATKSSSSPALSVAD--TVFIERVR 202
+GI YL++ +E ++ + A+ + + ++S +++ D FI++V
Sbjct: 121 VFRNGIPYLNQEEERQLREQYDEKRSQSNGAGALSYTSPNTSKCPVTIPDDQKKFIDQVV 180
Query: 203 SRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLED 262
+++ +L E+ ++ ++ C+ Q +L+ + L
Sbjct: 181 EKIED-----------------------LLQSEE---NKNLDLEPCTGFQRKLIYQTL-- 212
Query: 263 FSDVLVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVID 319
P I + T+ R ++ S ++++ +RE Q EQ + GF VI
Sbjct: 213 --SWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIH 270
Query: 320 LISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPV 379
I+ S K ++ HN L D +F PLP ++NEF FP+++D L+ P
Sbjct: 271 AIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMASTQPF 329
Query: 380 KKMTNISATIAYLKNRF----FAPIEME 403
K + N + ++A L+ R F P ++E
Sbjct: 330 KDIIN-NTSLAELEKRLKETPFNPPKVE 356
>gi|296417778|ref|XP_002838529.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634469|emb|CAZ82720.1| unnamed protein product [Tuber melanosporum]
Length = 455
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/355 (26%), Positives = 157/355 (44%), Gaps = 54/355 (15%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTG---SF---SSPWHRVSTFDTPETAYLKA 84
+++ +NF + L +I + I +S F+AV L+ +G +F ++P +R T E Y +
Sbjct: 2 EVSNSNFRQLLPDIISSIDNSCFVAVDLELSGIHKTFGPRNTPLNRKQTL---EERYKEV 58
Query: 85 KFAAERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAM 142
K AAERFQ+LQ +C + P+NF + P E K G+ + Q S + +
Sbjct: 59 KAAAERFQVLQLGLCAVSYDELLESYVCRPFNFFVNPNSEQKFGLDR-EYVVQASAIGFL 117
Query: 143 AKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVR 202
+ GF+FN+ GI YLS +E V R A + + A F++
Sbjct: 118 LESGFNFNSTYTSGIRYLSRREERYVIERENRL-----AQEFKEDIHIDEASQQFVKDFI 172
Query: 203 SRVKHW---KNACTD-SDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLK 258
+ ++ W N D +I T V S +K ++ Q+V K
Sbjct: 173 AEIQEWVDDPNPTFDFVNISTVGQGVNSYQKRLIH--------------------QVVRK 212
Query: 259 MLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQN-KRVRGFREV 317
+ P + Q +R +D + +KR+ + FE + +R G R V
Sbjct: 213 TFPHLQTLGRPTFV-------QVIR-----TDPAAEKMKRDERRARFETDVERGIGLRHV 260
Query: 318 IDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
ID + +SQKPL+ HN D ++ F+ PLP EF ++ +FP VID ++
Sbjct: 261 IDALFSSQKPLIGHNLFTDLINLYECFIGPLPDTSKEFAHAIHESFPIVIDTKFI 315
>gi|198278452|ref|NP_001030038.1| poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Mus musculus]
gi|187957406|gb|AAI58034.1| Poly(A)-specific ribonuclease (PARN)-like domain containing 1 [Mus
musculus]
Length = 531
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 155/347 (44%), Gaps = 50/347 (14%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F +SL ++ ++ +DF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 8 FEQSLPLLQELVAGADFVGLDIEFTGLRSNLSRP-QQISLFDLPSEWYLKTRQSVQQFTI 66
Query: 94 LQFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F + +++K +A+ NF LFP G+ F+ Q S + + + GFD+N
Sbjct: 67 CQIGLSMFSSIEGESNKYVAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFDYN 123
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ +GI Y++E QE +K H+ + S D I+ V +V W +
Sbjct: 124 KFLKNGIPYMNEEQEKKIK----------HSILRGNWRVRSSLDKDQIKVVIDKVTQWLD 173
Query: 211 ACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVP 269
+ D T + G + F +VQLVL+ L + VL
Sbjct: 174 LAEEGDQMTLPGIA--------GFQAF--------------EVQLVLRQALPNIWTVLKE 211
Query: 270 LIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLV 329
+ K +Q R L + D+ +E RGF ++ +QKPLV
Sbjct: 212 EWVIVK-KVSQPQRWYLEHASCDQVSCWKEQILLS------ARGFSVFFQMLVKAQKPLV 264
Query: 330 AHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
HN + D +H KF PLP + ++F ++ FP +ID + KDI
Sbjct: 265 GHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKNVTKDI 311
>gi|71043644|ref|NP_001020895.1| poly(A)-specific ribonuclease (PARN)-like domain containing 1
[Rattus norvegicus]
gi|68533833|gb|AAH99137.1| Poly(A)-specific ribonuclease (PARN)-like domain containing 1
[Rattus norvegicus]
Length = 341
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 155/347 (44%), Gaps = 50/347 (14%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F +SL ++ ++ +DF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 8 FEQSLPFLQELVAGADFVGLDIEFTGLRSNLSRP-QQISLFDLPSEWYLKTRQSVQQFTI 66
Query: 94 LQFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F + +++K +A+ NF LFP G+ F+ Q S + + + GFD+N
Sbjct: 67 CQIGLSMFSSVEGESNKYVAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFDYN 123
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ +GI Y++E QE +K H+ + S D I+ V +V W +
Sbjct: 124 KFLKNGIPYMNEEQEKKIK----------HSILRGNWRVRSSLDKDQIKVVIDKVTQWLD 173
Query: 211 ACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVP 269
+ D T + G + F +VQLVL+ L + VL
Sbjct: 174 LAEEGDQMTLPG--------ISGFQAF--------------EVQLVLRQALPNIWTVLKE 211
Query: 270 LIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLV 329
+ K +Q R L + D+ +E RGF ++ +QKPLV
Sbjct: 212 EGVIVK-KVSQPHRWYLEHASCDQVTCWKEQILLS------ARGFSVFFQMLVKAQKPLV 264
Query: 330 AHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
HN + D +H KF PLP + ++F ++ FP +ID + KDI
Sbjct: 265 GHNMMTDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKNVTKDI 311
>gi|354468609|ref|XP_003496745.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Cricetulus
griseus]
Length = 625
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 99/384 (25%), Positives = 175/384 (45%), Gaps = 42/384 (10%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSP--WHRVSTFDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P S FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCAFKYDHTDSKYITKSFNFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN GI YL++ +E ++ + + ++++ + AL+ E R +
Sbjct: 121 FDFNKVFCSGIPYLNQEEERHLREQFD-----EKRSQANGAGALAKCPVTIPEDQRKFID 175
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 266
++ + + E + S+ ++ C+ Q +L+ + L
Sbjct: 176 Q---------------VIEKIENFLQNKE----KKSLDLEPCTGFQRKLIYQTL----SW 212
Query: 267 LVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISA 323
P I + T+ R ++ S ++++ +RE + + EQ + GF VI I+
Sbjct: 213 KFPKGIHVETLETEKKERHIVISKVDEEERKRREQEKYAKEQEELNDAVGFSRVIHAIAN 272
Query: 324 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMT 383
S+K +V HN L D +F PLP ++NEF FP+++D L+ P K +
Sbjct: 273 SRKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMTICVFPRLLDTK-LMASTQPFKDII 331
Query: 384 NISATIAYLKNRF----FAPIEME 403
N + ++A L+ R F P ++E
Sbjct: 332 N-NTSLAELEKRLKETPFDPPKVE 354
>gi|354468611|ref|XP_003496746.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Cricetulus
griseus]
Length = 633
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 99/384 (25%), Positives = 175/384 (45%), Gaps = 42/384 (10%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSP--WHRVSTFDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P S FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCAFKYDHTDSKYITKSFNFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN GI YL++ +E ++ + + ++++ + AL+ E R +
Sbjct: 121 FDFNKVFCSGIPYLNQEEERHLREQFD-----EKRSQANGAGALAKCPVTIPEDQRKFID 175
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 266
++ + + E + S+ ++ C+ Q +L+ + L
Sbjct: 176 Q---------------VIEKIENFLQNKE----KKSLDLEPCTGFQRKLIYQTL----SW 212
Query: 267 LVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISA 323
P I + T+ R ++ S ++++ +RE + + EQ + GF VI I+
Sbjct: 213 KFPKGIHVETLETEKKERHIVISKVDEEERKRREQEKYAKEQEELNDAVGFSRVIHAIAN 272
Query: 324 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMT 383
S+K +V HN L D +F PLP ++NEF FP+++D L+ P K +
Sbjct: 273 SRKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMTICVFPRLLDTK-LMASTQPFKDII 331
Query: 384 NISATIAYLKNRF----FAPIEME 403
N + ++A L+ R F P ++E
Sbjct: 332 N-NTSLAELEKRLKETPFDPPKVE 354
>gi|350403678|ref|XP_003486873.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Bombus impatiens]
Length = 653
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 155/347 (44%), Gaps = 46/347 (13%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+ ++ +NF+ I+N I+++ FIA+ + +G S + S FDT Y+ K
Sbjct: 1 MNEVLNSNFDAVYPRIENAINNAAFIAIDAEMSGIHSERNLKNSLFDTLNDRYMAWKRNI 60
Query: 89 ERFQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
++F I+QF I F S A ++F+LFPR + + + + + + + K G
Sbjct: 61 QQFVIVQFGITTFYRVPSNNAYKADSFSFYLFPR---SIPLKNRQLSWEVEAIDFLYKHG 117
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN + GISY+ E ES ++ + H + LS + + +S+V
Sbjct: 118 FDFNKFLVGGISYIDETDESLLRDHIA------HGDVENYLSLLSYDEEENFKECKSKVY 171
Query: 207 HW-KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 265
W N ++ +K E ++T + + VL + + +++D
Sbjct: 172 EWISNKLENAPLKLE--VITPMVQYVLHKD-----------------------LRNNYND 206
Query: 266 VLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQ 325
+ + +++ + SS+ DL K+ E GF +V L+S+S+
Sbjct: 207 IWIT-------SDNKSINVMKISSNAQDDLFKK--GNLEEALLDVYLGFSKVFKLLSSSK 257
Query: 326 KPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
K ++ HN L D F+H +F PLP + EF ++ FPQ+ D +L
Sbjct: 258 KTIIGHNILLDLMFMHQQFYKPLPDSYKEFKSNIHTLFPQIYDTKFL 304
>gi|345569256|gb|EGX52124.1| hypothetical protein AOL_s00043g514 [Arthrobotrys oligospora ATCC
24927]
Length = 474
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 105/424 (24%), Positives = 178/424 (41%), Gaps = 64/424 (15%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKF---- 86
+I + +F+E L + I DFIA+ + +G S P R D L ++
Sbjct: 14 EIDRADFDEELPNLLKLIEDCDFIALDFEFSGVGSDP--RRGQVDMNHKPTLAERYKELC 71
Query: 87 -AAERFQILQFAICPFKLQAS-----KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLT 140
+AE ++I+Q ICP K + + K + P+NF + P E ++ ++ S +
Sbjct: 72 ESAEAYRIMQMGICPVKWEPNAPREPKYSSRPFNFFVAPHVEKRLFRYDRAYLFSASAID 131
Query: 141 AMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIER 200
K GFDFN G YL +E+ +K G D A K P D +E
Sbjct: 132 FHLKNGFDFNKLFSRGCLYLGHQEEAHIK---GLKRQRDEADKKEIEP--KEEDLPMLED 186
Query: 201 VRSRVKHW-KNACTDS----DIKTEAALVTSLRKIVLGGEQFGSRPSMTID-VCSERQVQ 254
VRS++ W K +D +I+ +A R+I+ QF R + + ER +Q
Sbjct: 187 VRSQIIGWIKRRESDPFDFLNIQRDAGYNGYQRRII---SQFIRREFPDYNGIWYERHLQ 243
Query: 255 LVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGF 314
++P G + + VL D+ + +LK + RG
Sbjct: 244 ----------------VVPYNGDRERNI--VLKREDDFQKVLKVQ------------RGV 273
Query: 315 REVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLK 374
R +ID I +KPL+ HN D ++H+ F+ P ++N+F L+ +F ++D +L
Sbjct: 274 RHLIDKIMELKKPLIGHNLFTDLVYMHNMFIGDPPEDINDFRRFLQQSFGLIVDTKFLAL 333
Query: 375 DIGPVKKMTNISATIAYLKNRFFAPIEMEIPN----QANENEGKIHGHNVVKICQLFGKL 430
K TN ++ + L + M P+ N + + G++ + F KL
Sbjct: 334 HC----KETNKNSASSSLPELGYRLSHMTYPHIDDFPVNTEQNHVAGYDAWCTARSFVKL 389
Query: 431 CSIL 434
+IL
Sbjct: 390 SAIL 393
>gi|402907752|ref|XP_003916630.1| PREDICTED: poly(A)-specific ribonuclease PARN [Papio anubis]
Length = 621
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/357 (25%), Positives = 162/357 (45%), Gaps = 30/357 (8%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN +GI YL++ +E ++ + + ++++ + ALS V
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYD-----EKRSQANGAGALSY------------VS 163
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 266
+ C + + + + + + + Q ++ ++ C+ Q +L+ + L
Sbjct: 164 PNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTL----SW 219
Query: 267 LVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISA 323
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I+
Sbjct: 220 KYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIAN 279
Query: 324 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVK 380
S K ++ HN L D +F PLP +++EF FP+++D L+ P K
Sbjct: 280 SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQPFK 335
>gi|281340599|gb|EFB16183.1| hypothetical protein PANDA_006508 [Ailuropoda melanoleuca]
Length = 615
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 99/380 (26%), Positives = 165/380 (43%), Gaps = 39/380 (10%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAAERFQIL 94
F +L ++ I +DF A+ + +G P T FDTPE Y K K + F +
Sbjct: 1 FKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYKKLKKHSMDFLLF 60
Query: 95 QFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTC 152
QF +C FK SK I +NF++FP+ P F CQ+S + +A +GFDFN
Sbjct: 61 QFGLCAFKYDHTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQGFDFNKV 119
Query: 153 IYDGISYLSEAQESTVKVRMGNPMAVDH--ATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+GI YL++ +E ++ + + T S SP S E + +
Sbjct: 120 FRNGIPYLNQEEERQLREQYDEKRLQSNGAGTLSYVSPNTSKCPVTIPEDQKKFIDQ--- 176
Query: 211 ACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPL 270
+V + ++ E ++ ++ C+ Q +L+ + L P
Sbjct: 177 ------------VVEKIEDLLQSEEN----KNLDLEPCTGFQRKLIYQTL----SWKYPK 216
Query: 271 IIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISASQKP 327
I T+ R ++ S ++++ +RE Q EQ + GF VI I+ S K
Sbjct: 217 GIHVDTLETEKKERYIVISKVDEEERKRREQQKLAKEQEELNDAVGFSRVIHAIANSGKL 276
Query: 328 LVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISA 387
++ HN L D +F PLP ++NEF FP+++D L+ P K + N +
Sbjct: 277 IIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMASTQPFKDIIN-NT 334
Query: 388 TIAYLKNRF----FAPIEME 403
++A L+ R F P ++E
Sbjct: 335 SLAELEKRLKETPFNPPKVE 354
>gi|355756570|gb|EHH60178.1| Poly(A)-specific ribonuclease PARN, partial [Macaca fascicularis]
Length = 634
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 97/379 (25%), Positives = 173/379 (45%), Gaps = 35/379 (9%)
Query: 36 NFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAAERFQI 93
+F +L ++ I +DF A+ + +G P T FDTPE Y K K + F +
Sbjct: 2 DFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLL 61
Query: 94 LQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNT 151
QF +C FK SK I +NF++FP+ P F CQ+S + +A +GFDFN
Sbjct: 62 FQFGLCTFKYDYTDSKYIMKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQGFDFNK 120
Query: 152 CIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNA 211
+GI YL++ +E ++ + + ++++ + ALS V +
Sbjct: 121 VFRNGIPYLNQEEERQLREQYD-----EKRSQANGAGALSY------------VSPNTSK 163
Query: 212 CTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLI 271
C + + + V + + + Q ++ ++ C+ Q +L+ + L P
Sbjct: 164 CPVTIPEDQKKFVDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTL----SWKYPKG 219
Query: 272 IPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISASQKPL 328
I + T+ R ++ S ++++ +RE Q EQ + GF VI I+ S K +
Sbjct: 220 IHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLV 279
Query: 329 VAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISAT 388
+ HN L D +F PLP +++EF FP+++D L+ P K + N + +
Sbjct: 280 IGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQPFKDIIN-NTS 337
Query: 389 IAYLKNRF----FAPIEME 403
+A L+ R F+P ++E
Sbjct: 338 LAELEKRLKETPFSPPKVE 356
>gi|355709980|gb|EHH31444.1| Poly(A)-specific ribonuclease PARN, partial [Macaca mulatta]
Length = 634
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 96/379 (25%), Positives = 173/379 (45%), Gaps = 35/379 (9%)
Query: 36 NFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAAERFQI 93
+F +L ++ I +DF A+ + +G P T FDTPE Y K K + F +
Sbjct: 2 DFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLL 61
Query: 94 LQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNT 151
QF +C FK SK I +NF++FP+ P F CQ+S + +A +GFDFN
Sbjct: 62 FQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQGFDFNK 120
Query: 152 CIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNA 211
+GI YL++ +E ++ + + ++++ + ALS V +
Sbjct: 121 VFRNGIPYLNQEEERQLREQYD-----EKRSQANGAGALSY------------VSPNTSK 163
Query: 212 CTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLI 271
C + + + + + + + Q ++ ++ C+ Q +L+ + L P
Sbjct: 164 CPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTL----SWKYPKG 219
Query: 272 IPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISASQKPL 328
I + T+ R ++ S ++++ +RE Q EQ + GF VI I+ S K +
Sbjct: 220 IHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLV 279
Query: 329 VAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISAT 388
+ HN L D +F PLP +++EF FP+++D L+ P K + N + +
Sbjct: 280 IGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQPFKDIIN-NTS 337
Query: 389 IAYLKNRF----FAPIEME 403
+A L+ R F+P ++E
Sbjct: 338 LAELEKRLKEIPFSPPKVE 356
>gi|426381306|ref|XP_004057290.1| PREDICTED: poly(A)-specific ribonuclease PARN [Gorilla gorilla
gorilla]
Length = 634
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/340 (25%), Positives = 154/340 (45%), Gaps = 31/340 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLANQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN +GI YL++ +E ++ + + ++++ + ALS V
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYD-----EKRSQANGAGALSY------------VS 163
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 266
+ C + + + + + + + Q ++ ++ C+ Q +L+ + L
Sbjct: 164 PNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKMFP 223
Query: 267 LVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISAS 324
LV L + Q R ++ S ++++ +RE Q EQ + GF VI I+ S
Sbjct: 224 LVSLCL-------QKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANS 276
Query: 325 QKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP 364
K ++ HN L D +F PLP +++EF FP
Sbjct: 277 GKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFP 316
>gi|311243695|ref|XP_001926376.2| PREDICTED: poly(A)-specific ribonuclease (PARN)-like domain
containing 1 [Sus scrofa]
Length = 531
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 92/352 (26%), Positives = 154/352 (43%), Gaps = 50/352 (14%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAA 88
I F +SL ++ + +DF+ + ++ TG + S P ++S FD P YLK + +
Sbjct: 3 IGADEFEQSLPLLQELVLGADFVGLDIEFTGLRSNLSGP-QQISLFDLPSEWYLKTRQSV 61
Query: 89 ERFQILQFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKE 145
++F I Q + F + +++K +A+ NF LFP G+ F+ Q S + + +
Sbjct: 62 QQFTICQIGLSVFSSIEGESNKYVAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQY 118
Query: 146 GFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRV 205
GFD+N + +GI Y++E QE ++ H + + S D I+ V V
Sbjct: 119 GFDYNKFLKNGIPYMNEEQEKKIR----------HNILTGNWRVRSSLDKDQIKVVIDEV 168
Query: 206 KHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVL-KMLEDFS 264
W + + D T + G + F +VQLVL K L +
Sbjct: 169 TRWLDLAEEGDWMTLPGIT--------GFQAF--------------EVQLVLRKALPNIW 206
Query: 265 DVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISAS 324
VL + K Q R L ++ D++ +E RGF ++ +
Sbjct: 207 TVLRDQGVIVKKVSKQH-RWYLENTSCDRESCWKEKILLS------ARGFSVFFQMLVKA 259
Query: 325 QKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
QKPLV HN + D +H KF PLP + +F ++ FP +ID + KD+
Sbjct: 260 QKPLVGHNMMMDLLHLHEKFFRPLPESYEDFKLNIHNLFPILIDTKNVTKDV 311
>gi|158285726|ref|XP_308433.4| AGAP007399-PA [Anopheles gambiae str. PEST]
gi|157020132|gb|EAA04629.5| AGAP007399-PA [Anopheles gambiae str. PEST]
Length = 631
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/361 (23%), Positives = 155/361 (42%), Gaps = 44/361 (12%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
ITK NF E L I+ I ++ F A+ + TG S + FDTPE YLK + +
Sbjct: 3 ITKQNFLEQLPSIREAIQNATFFAMDCEFTGLASD--RTIFPFDTPEEVYLKMVENSPPY 60
Query: 92 QILQFAICPFKLQAS------------KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYL 139
I+QF +C F+++ +V YNF+ +P+ + F+CQ +
Sbjct: 61 IIVQFGLCAFRVEPPGEEEEEKKDGQPRVSYQCYNFYCYPKGRTNV------FSCQGESM 114
Query: 140 TAMAKEGFDFNTCIYDGISYLSEAQESTVK--------VRMGNPMAVDHATKSSSSPALS 191
+A GFDFN +G+SY +E +E + R N +A + + P +
Sbjct: 115 RFLADNGFDFNRLFREGLSYANETEEQRYRADLKDRQATRAANILAAAESDLTEEEPKVG 174
Query: 192 VADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSER 251
+ V + V + D+ E L + +++++G C+
Sbjct: 175 EVNDVNMIPV---PPEHQQQVDDTAASIEEFLQSDRQELIVGS-------------CNAF 218
Query: 252 QVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRV 311
Q +L+ +M+E V + +A++ S E++ L + +T E + +
Sbjct: 219 QRKLIYQMIEQRYQRKVSTSTVSLENNQKAIKVERKRSTEEEQALDEQRRTRENDDLETN 278
Query: 312 RGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNY 371
G V+ ++ ++K ++ HN L D ++ +F PLP + EF + FP ++D Y
Sbjct: 279 VGLSLVLQELAKARKLIIGHNMLLDLFYVLRQFFKPLPADYQEFKKLTKEYFPLLLDTKY 338
Query: 372 L 372
L
Sbjct: 339 L 339
>gi|395535236|ref|XP_003769636.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Sarcophilus harrisii]
Length = 533
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 152/351 (43%), Gaps = 46/351 (13%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTG--SFSSPWHRVSTFDTPETAYLKAKFAA 88
++ F + L ++ I SDF+ + ++ TG S + S FD+P YLK K +
Sbjct: 2 ELGADGFEQKLPLLEELILGSDFLGLDIEFTGLRSIFPKGQQTSLFDSPAEWYLKTKQSI 61
Query: 89 ERFQILQFAICPFK---LQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKE 145
++F + Q + F +++K IA+ YNF LFP +G+ F+ Q S + + +
Sbjct: 62 QQFTVCQIGLSMFSSMGRKSNKYIAHSYNFFLFPT---TLGIMDSEFSFQASSILFLNQY 118
Query: 146 GFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRV 205
GFD+N + +GI Y++E QE +K + + S D ++ V V
Sbjct: 119 GFDYNKFLKNGIPYMNEEQEKKIK----------QDLLTGNWKVRSTLDKDQMKVVIDEV 168
Query: 206 KHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 265
W + D T + G + F + + + + V +++D
Sbjct: 169 TRWLEMAQEGDWMTLPDIT--------GFQAF------EVQLVLRQALPTVWTLMKD-RG 213
Query: 266 VLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQ 325
VLV + ++ R L +S D D +RE RGF ++ ++
Sbjct: 214 VLVKKV-------SRQYRWCLENSSRDHDDCRREKILLS------ARGFAVFFQMLVKAK 260
Query: 326 KPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
KPLV HN + D +H KF PLP + +F ++ FP +ID + K+I
Sbjct: 261 KPLVGHNMMMDLLHLHEKFYRPLPESYEQFKLNIHSLFPVLIDTKNVTKEI 311
>gi|168019851|ref|XP_001762457.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686190|gb|EDQ72580.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 594
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 101/367 (27%), Positives = 165/367 (44%), Gaps = 58/367 (15%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTG-SFSSPW-----------HRVSTFDTPE 78
++T NF E L I++ ISS FIA+ + +G + + P R D E
Sbjct: 2 EVTYGNFEELLPCIESAISSCQFIAIDGEFSGLTLTHPRFKGALISITDSRREEVLDDAE 61
Query: 79 TAYLKAKFAAERFQILQFAICPF--KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQT 136
Y + + +A+ F I+QF + F ++ S A +NF+ FPR G FTCQ
Sbjct: 62 QLYARVRTSAQHFLIMQFGLSAFHWNVEDSCYQAQTFNFYTFPRSN---GGSDVRFTCQA 118
Query: 137 SYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSV---- 192
S L + + GFDFN IY GI Y++ Q + +D +++ S V
Sbjct: 119 SSLDFLREHGFDFNKFIYSGIPYVTLEQ-----------LKLDKKSEARDSRDPIVLTKE 167
Query: 193 ADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQ 252
D F+E+ V+ W T + + + + +VL PS S +
Sbjct: 168 EDRNFVEQQLETVRTWVER-TVAREASSESSDSDPATLVL-------EPSN-----SYLR 214
Query: 253 VQLVLKMLEDF--SDVLVPLI-IP-AKGGGTQAVRAV--LTSSDEDKDLLKRELQTFEFE 306
L + ++F SD V L+ P A+ + RA + ++ E + KR+ +
Sbjct: 215 AALYQHLEQEFGKSDFFVELLRTPGARKSSLKLTRATSAVVAAQESEVAAKRQ------K 268
Query: 307 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP-Q 365
Q +R +GF V+ ++ KP+V HN L D +++ +F+ LPP ++EF ++L FP
Sbjct: 269 QLERSKGFANVMQCLTTCNKPIVGHNMLLDLAYLYQQFIGTLPPTLDEFRAHVKLLFPGG 328
Query: 366 VIDVNYL 372
V D YL
Sbjct: 329 VYDTKYL 335
>gi|242009862|ref|XP_002425701.1| poly A-specific ribonuclease,putative [Pediculus humanus corporis]
gi|212509602|gb|EEB12963.1| poly A-specific ribonuclease,putative [Pediculus humanus corporis]
Length = 500
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 101/390 (25%), Positives = 171/390 (43%), Gaps = 68/390 (17%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T NF + L +I+ + S FI++ + +G F+ R D+P+ Y+K + A +
Sbjct: 3 EVTSENFWKILPQIEEELKSCSFISIDCEFSGLFT---QRNCLLDSPKERYMKLRSAVQD 59
Query: 91 FQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
I+Q I FK + + Y+F+L P TCQ L + K FD
Sbjct: 60 ISIIQMGITLFKFDNFNDQFHSSSYSFYLMPTGIFNTNT---KLTCQIESLKFLCKYNFD 116
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN IY GI+Y+SE E+ +K D T S L +D I+ + S++ W
Sbjct: 117 FNKAIYKGINYISEKNENELKKFFNQ----DKITIES----LYFSDC--IKEIHSKIDKW 166
Query: 209 K-NACTDSD--IKTEAALVTSLRKIVLG--GEQFGS-RPSMTIDVCSERQVQLVLKMLED 262
+ N SD IK SLR ++L ++F + +P++T D
Sbjct: 167 RLNTKEKSDMIIKISELPCKSLRYLILLEISQRFSNLQPTLTDD---------------- 210
Query: 263 FSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLIS 322
D +V I K EDK L+++L F+ + GF ++I +
Sbjct: 211 --DAIVIKKIEMKRKEMNI---------EDKFFLQKKL----FQD---IIGFSKIIKEMR 252
Query: 323 ASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIG----- 377
+KP++AHN + D I+ +F+ PLP N +F ++ FP + D +L +++
Sbjct: 253 NVKKPIIAHNCILDIMTIYQQFIKPLPSNYKQFKNDIKKLFPIIYDTKFLTRELNNLINN 312
Query: 378 --PVKKMTNISATIAYLKNRFFAPIEMEIP 405
P K ++++ Y KN P + +P
Sbjct: 313 EIPSKSLSDVY---LYFKNGNVVPKILYMP 339
>gi|334324288|ref|XP_001381461.2| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Monodelphis domestica]
Length = 615
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 152/345 (44%), Gaps = 46/345 (13%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG--SFSSPWHRVSTFDTPETAYLKAKFAAERFQIL 94
F + L ++ I +SDF+ + ++ TG S + S FD+P YLK + + ++F +
Sbjct: 8 FEQKLPMLEELILASDFLGLDIEFTGLRSIYPKGQQTSLFDSPAEWYLKTRRSIQQFTVC 67
Query: 95 QFAICPFK---LQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNT 151
Q + F +++K +A+ YNF LFP +G+ F+ Q S + + + GFD+N
Sbjct: 68 QIGLSMFSNMGRKSNKYLAHSYNFFLFPTT---LGIMDSEFSFQASSILFLNQYGFDYNK 124
Query: 152 CIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNA 211
+ +GI Y++E QE +K + + + S D ++ V V W
Sbjct: 125 FLKNGIPYMNEEQEKKIKQDL----------LTGNWKVRSTLDKDQMKVVIDEVTRWLEM 174
Query: 212 CTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLI 271
+ D T + G + F + + + + V +++D VLV +
Sbjct: 175 AQEGDWMTLPDIT--------GFQAF------EVQLVLRQALPTVWTLMKD-KGVLVKKV 219
Query: 272 IPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAH 331
++ R L +S D D +RE RGF ++ ++KPLV H
Sbjct: 220 -------SRQYRWCLENSSRDHDDCRREKILLS------ARGFAVFFQMLVKAKKPLVGH 266
Query: 332 NSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
N + D +H KF PLP + +F ++ FP +ID + K+I
Sbjct: 267 NMMMDLLHLHEKFYRPLPESYEQFKLNIHGLFPVLIDTKNVTKEI 311
>gi|291397222|ref|XP_002715010.1| PREDICTED: poly(A)-specific ribonuclease (deadenylation nuclease)
[Oryctolagus cuniculus]
Length = 531
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 95/355 (26%), Positives = 155/355 (43%), Gaps = 66/355 (18%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F ++L ++ + +DF+ + ++ TG S S P H++S FD P YLK + + ++F I
Sbjct: 8 FEQNLPLLQELVLGADFVGLDIEFTGLRSSLSEP-HQISLFDLPSEWYLKTRRSVQQFTI 66
Query: 94 LQFAICPFKL---QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F +++K +A+ NF LFP G+ F+ Q S + + + GF++N
Sbjct: 67 CQIGLSVFSTIEGESNKYVAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFNYN 123
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ GI Y++E QE +K N +A D +SS D I+ V V W +
Sbjct: 124 KFLKKGIPYMNEEQEKKIK---QNILAGDWRVRSS-------LDKDQIKVVIDEVTRWLD 173
Query: 211 ACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPL 270
+ D T + G + F +VQLVL+ +P
Sbjct: 174 PAEEGDSITLPGIA--------GFQAF--------------EVQLVLRQ-------ALPN 204
Query: 271 IIPAKGGGTQAVRAV---------LTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLI 321
I A+ V+ V TS D ++ L + RGF ++
Sbjct: 205 IWTAQREQGVVVKKVSRQHRWYLEHTSCDRASCWKEKILLS--------ARGFSVFFQML 256
Query: 322 SASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
+QKPLV HN + D +H KF PLP + ++F ++ FP +ID + KDI
Sbjct: 257 VRAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKNVTKDI 311
>gi|354481849|ref|XP_003503113.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Cricetulus griseus]
Length = 577
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 97/358 (27%), Positives = 162/358 (45%), Gaps = 52/358 (14%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG--SFSSPWHRVSTFDTPETAYLKAKFAAERFQIL 94
F E+LS + + I +DF+ + ++ TG S SS ++S FD P Y+K + + ++F I
Sbjct: 8 FAETLSFLHDIIDEADFVGLDIEFTGLRSNSSRPQQISLFDLPSEWYMKTRQSVQQFTIC 67
Query: 95 QFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNT 151
Q + F + +++K +A+ NF LFP G+ F+ Q S + + + GFD+N
Sbjct: 68 QIGLSVFSSIEGESNKYVAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFDYNK 124
Query: 152 CIYDGISYLSEAQESTVK--VRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWK 209
+ +GI Y++E QE ++ + GN +SS D I+ V +V W
Sbjct: 125 FLKNGIPYMNEEQEKKIRESILRGN-----WRVRSS-------LDKDQIKVVIDKVTRWL 172
Query: 210 NACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLV 268
+ + D ++ L G I +VQ+VL+ L + VL
Sbjct: 173 DLAEEGD------------RMTLPG----------IAGFQAYEVQMVLRQALPNIWTVLK 210
Query: 269 PLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPL 328
+ K +Q R L ++ D+ RE E RGF ++ +QKPL
Sbjct: 211 DEGVIVK-KVSQPHRWYLENASCDQIRCWRE------EIVLSARGFSVFFKMLVRAQKPL 263
Query: 329 VAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNIS 386
+ HN + D +H KF PLP + +EF ++ FP +ID + KDI + +S
Sbjct: 264 IGHNMMMDLLHLHEKFYKPLPESYDEFKQNIHNLFPVIIDTKNVTKDIWKEMRFPRVS 321
>gi|355709311|gb|AES03549.1| polyA-specific ribonuclease [Mustela putorius furo]
Length = 482
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 97/375 (25%), Positives = 168/375 (44%), Gaps = 35/375 (9%)
Query: 40 SLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAAERFQILQFA 97
+L ++ I +DF A+ + +G P T FDTPE Y K K + F + QF
Sbjct: 1 NLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHSMDFLLFQFG 60
Query: 98 ICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYD 155
+C FK SK I +NF++FP+ P F CQ+S + +A +GFDFN +
Sbjct: 61 LCTFKYDHTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRN 119
Query: 156 GISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDS 215
GI YL++ +E ++ + + +S+ + ALS V + C +
Sbjct: 120 GIPYLNQEEERQLREQYD-----EKRLQSNGAGALSY------------VSPNTSKCPVT 162
Query: 216 DIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAK 275
+ + + + + + Q ++ ++ C+ Q +L+ + L P I
Sbjct: 163 IPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTL----SWKYPKGIHVD 218
Query: 276 GGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISASQKPLVAHN 332
T+ R ++ S ++++ +RE Q EQ + GF VI I+ S K ++ HN
Sbjct: 219 TLETEKKERYIVISKVDEEERKRREQQKLAKEQEELNDAVGFSRVIHAIANSGKLVIGHN 278
Query: 333 SLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYL 392
L D +F PLP ++NEF FP+++D L+ P K + N + ++A L
Sbjct: 279 MLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMASTQPFKDIIN-NTSLAEL 336
Query: 393 KNRF----FAPIEME 403
+ R F P ++E
Sbjct: 337 EKRLKETPFNPPKVE 351
>gi|443429421|gb|AGC92706.1| poly(A)-specific ribonuclease PARN-like protein [Heliconius erato]
Length = 586
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 115/446 (25%), Positives = 192/446 (43%), Gaps = 88/446 (19%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T+ NF E+L I I+ +DF+ + + TG + VS FD+P+ Y +
Sbjct: 2 EVTRRNFKEALPLIGESIAKADFLVIDTEFTGLING--RDVSMFDSPQEYYNTLLNGSTD 59
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F ++Q+ +C F + + YNF LFPR P F CQ+S L ++ +GFD
Sbjct: 60 FLLIQYGLCAFYWNDEEKHYMNDAYNFFLFPRGR---PGPDKIFLCQSSSLDFLSSQGFD 116
Query: 149 FNTCIYDGISYLSEAQESTVK----------VRMGNPMAVDHATKSSSSPALSVADTVFI 198
FN I +GISY+SE ES ++ + +P+ + KS I
Sbjct: 117 FNKLIREGISYMSEPIESRLRENLTERQSRIINDKDPIVIPDEHKSQ------------I 164
Query: 199 ERVRSRVKHW--KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLV 256
E + RV+ + +N + DI A + R+++ ++ GSR + + +
Sbjct: 165 EDICKRVRTFLDENKTDEMDIDRCNAFI---RRLLF--QELGSR--------FKDEAFVE 211
Query: 257 LKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFRE 316
K+LE+ S VL + R S + KD KRE + E+ + GF +
Sbjct: 212 TKVLENKSRVL------------KVTRIKSPSESKSKDDQKREKEW---EEFEEAVGFSK 256
Query: 317 VIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
V +IS S+K ++ HN L D S F PLP + F FP+++D Y + +
Sbjct: 257 VARMISQSEKLVIGHNMLLDVLHTLSHFFQPLPEDYASFKEFAHCMFPRLLDTKY-MSSL 315
Query: 377 GPVKKMTNISATIAYLKNRFFAPIEM-EIPN---------QANENEG------------K 414
P K + L+ P + EIP+ Q ++E
Sbjct: 316 PPFKDKVASTVLPHLLQTLSEPPFALPEIPSLPSRGYTCAQDKQHEAGYDAYVTGLCFLA 375
Query: 415 IHGHNVVKICQLFGKLCSILKITPDA 440
+H H + ++ G+ C+ ++TPDA
Sbjct: 376 MHAH----VTRMRGERCT--RVTPDA 395
>gi|74141205|dbj|BAE35913.1| unnamed protein product [Mus musculus]
Length = 624
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 99/386 (25%), Positives = 178/386 (46%), Gaps = 46/386 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSP--WHRVSTFDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G + P S FDTPE Y K K +
Sbjct: 2 EIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISNGPSVTALTSGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK + +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCAFKYDHTDSKHVTKSFNFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTV--FIERVRSR 204
FDFN GI YL++ +E ++ + + + + + +++ + FI++V +
Sbjct: 121 FDFNKVFCSGIPYLNQEEERQLREQFDEKRSQANGAGALAKCPVTIPEDQKKFIDQVVEK 180
Query: 205 VKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFS 264
++ + L E+ + S+ +D C+ Q +L+ + L
Sbjct: 181 IEDF-----------------------LQSEE---KRSLELDPCTGFQRKLIYQTL---- 210
Query: 265 DVLVPLIIPAKGGGT-QAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLI 321
P I + T + R ++ S ++++ +RE + + EQ + GF VI I
Sbjct: 211 SWKYPKGIHVETLETDKKERHIVISKVDEEERKRREQEKYTKEQEELNDAVGFSRVIHAI 270
Query: 322 SASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKK 381
+ S K +V HN L D +F PLP ++NEF FP+++D L+ P K
Sbjct: 271 ANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTK-LMASTQPFKD 329
Query: 382 MTNISATIAYLKNRF----FAPIEME 403
+ N + ++A L+ R F P ++E
Sbjct: 330 IIN-NTSLAELEKRLKETPFDPPKVE 354
>gi|449497560|ref|XP_002188970.2| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Taeniopygia guttata]
Length = 496
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 136/317 (42%), Gaps = 56/317 (17%)
Query: 70 RVSTFDTPETAYLKAKFAAERFQILQFAICPF-KLQASKVIAYPYNFHLFPRDELKMGMP 128
R FD+P Y+KA+ + +RF ++Q + F K ++K + + YNF LFP +G+
Sbjct: 59 REGLFDSPAERYVKARQSVQRFSLVQLGLAIFSKENSNKYVVHSYNFFLFPS---TLGIR 115
Query: 129 SYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSP 188
FT S + ++ GFD+N + DGI Y++E QE ++ H +
Sbjct: 116 DVEFTVSASSIQFLSHYGFDYNKFLKDGIPYMNEVQEEILR---------QHLLADTWKV 166
Query: 189 ALSVADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVC 248
+ D +++ V W A + D ++ L +V G
Sbjct: 167 CSTNVDRDVLKKAIDEVTSWIVAAKEED----TMILQDLNVVVYGYHMI----------- 211
Query: 249 SERQVQLVLKM---------LEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRE 299
+VQLVL+ LED + V+V + P R +L +S +D K
Sbjct: 212 ---EVQLVLRQALENVWTEPLED-NKVMVKKVSPEH-------RQLLENSSDDHCQKKLI 260
Query: 300 LQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSL 359
L + RGF + ++ +KPLV HN L D +H KF PLP + EF ++
Sbjct: 261 LLS--------ARGFTNLFQILVKVKKPLVGHNMLMDLMHLHDKFYRPLPESYEEFKRNI 312
Query: 360 RLAFPQVIDVNYLLKDI 376
FP +ID + K +
Sbjct: 313 HNLFPVIIDTKTVTKSV 329
>gi|297679544|ref|XP_002817589.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Pongo abelii]
Length = 532
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 96/363 (26%), Positives = 158/363 (43%), Gaps = 54/363 (14%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F ESL ++ + +DF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 8 FEESLPLLQELVQEADFVGLDIEFTGLRSNLSGP-QQISLFDLPSEWYLKTRQSVQQFTI 66
Query: 94 LQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCI 153
Q I F +Q A+ NF+LFP G+ F+ Q S + + + GF++N +
Sbjct: 67 CQ--IGEFNIQL--YTAHSCNFYLFPT---TFGILDSEFSFQASSVQFLNQYGFNYNKFL 119
Query: 154 YDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACT 213
+GI Y++E QE ++ H + + S D I+ V V W +
Sbjct: 120 KNGIPYMNEEQEKKIR----------HDILTGNWRVRSSPDKDQIKVVIDEVTRWLDLAK 169
Query: 214 DSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVPLII 272
+ D T + G + F +VQLVL+ L + VL +
Sbjct: 170 EGDWMTLPGIT--------GFQAF--------------EVQLVLRQALPNIWTVLKDEGV 207
Query: 273 PAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHN 332
K Q R L ++ D++ +E RGF ++ +QKPLV HN
Sbjct: 208 VVKKVSKQH-RWYLQNTSCDRESCWKENILLS------ARGFSAFFQMLVKAQKPLVGHN 260
Query: 333 SLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKK---MTNISATI 389
+ D +H KF PLP + ++F ++ FP +ID + KDI V + +S T+
Sbjct: 261 MMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKSVTKDIWKVMNRIALRRVSRTM 320
Query: 390 AYL 392
L
Sbjct: 321 GRL 323
>gi|21311877|ref|NP_083037.1| poly(A)-specific ribonuclease PARN [Mus musculus]
gi|12835834|dbj|BAB23382.1| unnamed protein product [Mus musculus]
gi|26337129|dbj|BAC32249.1| unnamed protein product [Mus musculus]
Length = 624
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 99/386 (25%), Positives = 178/386 (46%), Gaps = 46/386 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSP--WHRVSTFDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G + P S FDTPE Y K K +
Sbjct: 2 EIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISNGPSVTALTSGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK + +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCAFKYDHTDSKHVTKSFNFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTV--FIERVRSR 204
FDFN GI YL++ +E ++ + + + + + +++ + FI++V +
Sbjct: 121 FDFNKVFCSGIPYLNQEEERQLREQFDEKRSQANGAGALAKCPVTIPEDQKKFIDQVIEK 180
Query: 205 VKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFS 264
++ + L E+ + S+ +D C+ Q +L+ + L
Sbjct: 181 IEDF-----------------------LQSEE---KRSLELDPCTGFQRKLIYQTL---- 210
Query: 265 DVLVPLIIPAKGGGT-QAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLI 321
P I + T + R ++ S ++++ +RE + + EQ + GF VI I
Sbjct: 211 SWKYPKGIHVETLETDKKERHIVISKVDEEERKRREQEKYTKEQEELNDAVGFSRVIHAI 270
Query: 322 SASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKK 381
+ S K +V HN L D +F PLP ++NEF FP+++D L+ P K
Sbjct: 271 ANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTK-LMASTQPFKD 329
Query: 382 MTNISATIAYLKNRF----FAPIEME 403
+ N + ++A L+ R F P ++E
Sbjct: 330 IIN-NTSLAELEKRLKETPFDPPKVE 354
>gi|395839184|ref|XP_003792479.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Otolemur garnettii]
Length = 535
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/347 (26%), Positives = 150/347 (43%), Gaps = 50/347 (14%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F +SL ++ + +DF+ + ++ TG + + P ++S FD P YLK + + ++F I
Sbjct: 8 FEQSLPLLEELVLGADFVGLDIEFTGLRSNLTGP-QQISLFDLPSEWYLKTRQSVQQFTI 66
Query: 94 LQFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F + +++K +A+ NF LFP G+ F+ Q S + + + GFD+N
Sbjct: 67 CQIGLSVFSSMEGESNKYVAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFDYN 123
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ +GI Y++E QE +K H + S D I+ V V W
Sbjct: 124 KFLKNGIPYMNEEQEKKIK----------HNILCGNWRVRSALDKDQIKVVIDEVTRWLQ 173
Query: 211 ACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVP 269
+ D T + G + F +VQLVL+ L + V
Sbjct: 174 LAEEGDWLTLPGIA--------GFQAF--------------EVQLVLRQALPNIWTVQRE 211
Query: 270 LIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLV 329
+ K Q R L ++ D+ RE RGF ++ +QKPLV
Sbjct: 212 EGVVVKKVSKQH-RWYLENTSCDRASCWREKILLS------ARGFSVFFQMLVKAQKPLV 264
Query: 330 AHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
HN + D +H KF PLP + ++F ++ FP +ID + KDI
Sbjct: 265 GHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVIIDTKNVTKDI 311
>gi|148664948|gb|EDK97364.1| poly(A)-specific ribonuclease (deadenylation nuclease), isoform
CRA_c [Mus musculus]
Length = 672
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 99/386 (25%), Positives = 178/386 (46%), Gaps = 46/386 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSP--WHRVSTFDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G + P S FDTPE Y K K +
Sbjct: 50 EIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISNGPSVTALTSGFDTPEERYQKLKKHS 109
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK + +NF++FP+ P F CQ+S + +A +G
Sbjct: 110 MDFLLFQFGLCAFKYDHTDSKHVTKSFNFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQG 168
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVAD--TVFIERVRSR 204
FDFN GI YL++ +E ++ + + + + + +++ + FI++V +
Sbjct: 169 FDFNKVFCSGIPYLNQEEERQLREQFDEKRSQANGAGALAKCPVTIPEDQKKFIDQVIEK 228
Query: 205 VKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFS 264
++ + L E+ + S+ +D C+ Q +L+ + L
Sbjct: 229 IEDF-----------------------LQSEE---KRSLELDPCTGFQRKLIYQTLS--- 259
Query: 265 DVLVPLIIPAKGGGT-QAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLI 321
P I + T + R ++ S ++++ +RE + + EQ + GF VI I
Sbjct: 260 -WKYPKGIHVETLETDKKERHIVISKVDEEERKRREQEKYTKEQEELNDAVGFSRVIHAI 318
Query: 322 SASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKK 381
+ S K +V HN L D +F PLP ++NEF FP+++D L+ P K
Sbjct: 319 ANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTK-LMASTQPFKD 377
Query: 382 MTNISATIAYLKNRF----FAPIEME 403
+ N + ++A L+ R F P ++E
Sbjct: 378 IIN-NTSLAELEKRLKETPFDPPKVE 402
>gi|60390578|sp|Q8VDG3.1|PARN_MOUSE RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Polyadenylate-specific ribonuclease
gi|18256918|gb|AAH21899.1| Parn protein [Mus musculus]
Length = 624
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 99/386 (25%), Positives = 177/386 (45%), Gaps = 46/386 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSP--WHRVSTFDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P S FDTPE Y K K +
Sbjct: 2 EIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK + +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCAFKYDHTDSKHVTKSFNFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTV--FIERVRSR 204
FDFN GI YL++ +E ++ + + + + + +++ + FI++V +
Sbjct: 121 FDFNKVFCSGIPYLNQEEERQLREQFDEKRSQANGAGALAKCPVTIPEDQKKFIDQVIEK 180
Query: 205 VKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFS 264
++ + L E+ + S+ +D C+ Q +L+ + L
Sbjct: 181 IEDF-----------------------LQSEE---KRSLELDPCTGFQRKLIYQTLS--- 211
Query: 265 DVLVPLIIPAKGGGT-QAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLI 321
P I + T + R ++ S ++++ +RE + + EQ + GF VI I
Sbjct: 212 -WKYPKGIHVETLETDKKERHIVISKVDEEERKRREQEKYTKEQEELNDAVGFSRVIHAI 270
Query: 322 SASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKK 381
+ S K +V HN L D +F PLP ++NEF FP+++D L+ P K
Sbjct: 271 ANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTK-LMASTQPFKD 329
Query: 382 MTNISATIAYLKNRF----FAPIEME 403
+ N + ++A L+ R F P ++E
Sbjct: 330 IIN-NTSLAELEKRLKETPFDPPKVE 354
>gi|444722573|gb|ELW63261.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Tupaia chinensis]
Length = 721
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 91/352 (25%), Positives = 153/352 (43%), Gaps = 50/352 (14%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAA 88
+ F +SL ++ + +DF+ + ++ TG + S P ++S FD P YLK + +
Sbjct: 3 VCADEFEQSLPLLQELVLGADFVGLDIEFTGLRSNLSGP-QQISLFDLPSEWYLKTRQSV 61
Query: 89 ERFQILQFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKE 145
++F I Q + F + ++ K A+ NF LFP G+ F+ Q S + + +
Sbjct: 62 QQFTICQIGLSVFSSVEGESDKYEAHSCNFFLFP---TTFGVLDSEFSFQASSVQFLNQY 118
Query: 146 GFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRV 205
GF++N + +GI Y++E QE +K H + S S D I+ V V
Sbjct: 119 GFNYNKFLKNGIPYMNEEQEKKIK----------HNLLTGSWKVRSSLDKDQIKAVIDEV 168
Query: 206 KHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFS 264
W + + D T + G + F +VQLVL+ L +
Sbjct: 169 TRWLDQAEEGDWMTLPGIT--------GFQAF--------------EVQLVLRQALPNVW 206
Query: 265 DVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISAS 324
VL + K Q R L ++ D++ +E RGF ++ +
Sbjct: 207 TVLKDRGVIVKKVSKQH-RWYLENTSCDRESCWKERILLS------ARGFSVFFQMLVKA 259
Query: 325 QKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
QKPLV HN + D +H KF PLP + ++F ++ FP +ID + KD+
Sbjct: 260 QKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHHLFPVLIDTKNVTKDV 311
>gi|225698027|pdb|3D45|A Chain A, Crystal Structure Of Mouse Parn In Complex With M7gpppg
gi|225698028|pdb|3D45|B Chain B, Crystal Structure Of Mouse Parn In Complex With M7gpppg
Length = 507
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 99/386 (25%), Positives = 177/386 (45%), Gaps = 46/386 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSP--WHRVSTFDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P S FDTPE Y K K +
Sbjct: 4 EIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHS 63
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK + +NF++FP+ P F CQ+S + +A +G
Sbjct: 64 MDFLLFQFGLCAFKYDHTDSKHVTKSFNFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQG 122
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTV--FIERVRSR 204
FDFN GI YL++ +E ++ + + + + + +++ + FI++V +
Sbjct: 123 FDFNKVFCSGIPYLNQEEERQLREQFDEKRSQANGAGALAKCPVTIPEDQKKFIDQVIEK 182
Query: 205 VKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFS 264
++ + L E+ + S+ +D C+ Q +L+ + L
Sbjct: 183 IEDF-----------------------LQSEE---KRSLELDPCTGFQRKLIYQTL---- 212
Query: 265 DVLVPLIIPAKGGGT-QAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLI 321
P I + T + R ++ S ++++ +RE + + EQ + GF VI I
Sbjct: 213 SWKYPKGIHVETLETDKKERHIVISKVDEEERKRREQEKYTKEQEELNDAVGFSRVIHAI 272
Query: 322 SASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKK 381
+ S K +V HN L D +F PLP ++NEF FP+++D L+ P K
Sbjct: 273 ANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTK-LMASTQPFKD 331
Query: 382 MTNISATIAYLKNRF----FAPIEME 403
+ N + ++A L+ R F P ++E
Sbjct: 332 IIN-NTSLAELEKRLKETPFDPPKVE 356
>gi|297723221|ref|NP_001173974.1| Os04g0467400 [Oryza sativa Japonica Group]
gi|255675538|dbj|BAH92702.1| Os04g0467400 [Oryza sativa Japonica Group]
Length = 207
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+KQ+T+ N E+L E++ + + F+ + L+ +G S+PW D + YLK + +A
Sbjct: 46 VKQVTRGNLAEALEELRARVRGAAFVGIDLEMSGVTSAPWRDTLGLDRADVRYLKLRDSA 105
Query: 89 ERFQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
ERF LQ +CPF+ +K +A+P+NF +F R+E ++ F CQT+ + +AK
Sbjct: 106 ERFAALQLGVCPFRWDPAKSAFVAHPHNFFIFSRNEPLNDCSTHEFLCQTTSIDFLAKYQ 165
Query: 147 FDFNTCIYD 155
FDFNTC +
Sbjct: 166 FDFNTCFRE 174
>gi|298707724|emb|CBJ26041.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 705
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 94/373 (25%), Positives = 158/373 (42%), Gaps = 44/373 (11%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
ITK NF +S I I SS FIA+ + TG R D+ + Y A+ + +F
Sbjct: 3 ITKENFEQSFDVICEAIRSSHFIALDTEFTGLRLPGAAREKMMDSVQARYDLARGSCSQF 62
Query: 92 QILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNT 151
+ Q+ IC F+ ++ A P+N + P ++CQ S + ++K GFDF
Sbjct: 63 MLTQYGICCFRYHDERLEARPFNCFVVPS---TYHGSDRVYSCQASSMDFLSKHGFDFQA 119
Query: 152 CIYDGISYLSEAQESTVKVRMGNPMAVDHATKSS-------------------------S 186
G+ +LS A+E V+ ++ + +
Sbjct: 120 WASHGVPFLSRAEEEVVEGKLRRRWEREATVAAERKEAVAAKAEAEAAAGEGDGGAAAVE 179
Query: 187 SPALSVADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTID 246
P + D IE ++ + K D+ K EA L S GGE + S+ ++
Sbjct: 180 GPVHTARDGTTIESLQ---EPEKGMVKDALKKVEALLAESSS----GGEYV--QKSVKLE 230
Query: 247 VCSERQVQLVLKML-EDFSDV-LVPLIIPAKGGGTQAVRAVLTSSDE----DKDLLKREL 300
+ RQ L+ + + +DV L L PA + +R V E ++ L+ +
Sbjct: 231 PMNGRQRWLMYEFVGSSTADVKLSNLPGPAYARPME-IRTVCKDDPEKHAEEEAKLRADE 289
Query: 301 QTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLR 360
Q + +R GFR V+D IS + KP++ HN L D H KF+ P+P +M++ +L
Sbjct: 290 QARQLGDLRRAVGFRRVVDEISKAGKPVICHNGLLDLLHTHDKFVGPIPVDMDDGTRALH 349
Query: 361 LAFPQVIDVNYLL 373
P++ D ++
Sbjct: 350 SLLPRLFDSKVVM 362
>gi|156351496|ref|XP_001622538.1| hypothetical protein NEMVEDRAFT_v1g1365 [Nematostella vectensis]
gi|156209100|gb|EDO30438.1| predicted protein [Nematostella vectensis]
Length = 459
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 92/363 (25%), Positives = 160/363 (44%), Gaps = 52/363 (14%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
+I ++NF++ L + I + F+AV + +G +S W + + D+P+ Y K K +
Sbjct: 2 EILRSNFSQCLPIVSEAIEEASFLAVDAEFSG-LNSHWKQQNALDSPQERYTKLKNTSHD 60
Query: 91 FQILQFAICPF--KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F I+QF +C F +K IA P+NF++FPR ++ P F CQ+S L ++ FD
Sbjct: 61 FIIVQFGLCAFIWNENLNKYIAKPFNFYIFPR-QIHRSTPDVRFLCQSSSLDFLSGHNFD 119
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPAL-----SVADTVFIERVRS 203
F I GISYL E ++ A +H+ +SP + S V+ V
Sbjct: 120 FQKWITQGISYLRPYDEQKLRDNFQERQA-EHSFGPFTSPPVHSPTGSSTKNVYKTPVIV 178
Query: 204 RVKHWK---NACTDSD--IKTEAALVTS-------LRKIVLG--GEQFGSRPSMTIDVCS 249
+H + AC+ + +K TS LRK++ +F S + ++
Sbjct: 179 PPEHQEFVSGACSKIEEMVKDPDGKRTSLPPCNGYLRKLIYQTVKHRFRSGIHLEKNMNE 238
Query: 250 ERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK 309
+++ +V ++ D +K + E E E +
Sbjct: 239 KKECFIVATKVD----------------------------DNEKKTFEEEKMAKEDELIE 270
Query: 310 RVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDV 369
GF V+ +IS S K +V HN L D I +F PLP ++++F +++ P+V+D
Sbjct: 271 SAVGFSAVMKMISDSGKLVVGHNMLLDLLHIVDQFFCPLPADLDDFKATVQSLLPRVLDT 330
Query: 370 NYL 372
+
Sbjct: 331 KVM 333
>gi|393716306|ref|NP_001257344.1| poly(A)-specific ribonuclease PARN [Rattus norvegicus]
gi|306415570|gb|ADM86746.1| poly(A)-specific ribonuclease [Rattus norvegicus]
Length = 624
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 97/384 (25%), Positives = 176/384 (45%), Gaps = 42/384 (10%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSP--WHRVSTFDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P S FDTPE Y K K +
Sbjct: 2 EIIRSNFKINLPKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK + +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCAFKYDHANSKHVTKSFNFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN GI YL++ +E ++ + + ++++ + AL+
Sbjct: 121 FDFNKVFCSGIPYLNQEEERQLREQFD-----EKRSQANGAGALT--------------- 160
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 266
C + + + + + + + G Q + ++ ++ C+ Q +L+ + L
Sbjct: 161 ----KCPVTIPEDQKKFIDQVIEKIEGFLQREEKRTLELNPCTGFQRKLIYQTL----SW 212
Query: 267 LVPLIIPAKGGGT-QAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISA 323
P I + T + R ++ S ++++ +RE + + EQ + GF VI I+
Sbjct: 213 KYPKGIHVETLETDKKERHIVISKVDEEERKRREQEKYAKEQEELNDAVGFSRVIHAIAN 272
Query: 324 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMT 383
S K +V HN L D +F PLP ++NEF FP+++D L+ P K +
Sbjct: 273 SGKLVVGHNMLLDVMHTIHQFYCPLPVDLNEFKEMTTCVFPRLLDTK-LMASTQPFKDII 331
Query: 384 NISATIAYLKNRF----FAPIEME 403
N + ++A L+ R F P ++E
Sbjct: 332 N-NTSLAELEKRLKETPFDPPKVE 354
>gi|322801460|gb|EFZ22121.1| hypothetical protein SINV_07959 [Solenopsis invicta]
Length = 571
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 144/343 (41%), Gaps = 38/343 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T +NF E L E+++ + ++ F+++ + TG S P FDTP Y K + +
Sbjct: 2 EVTNSNFQEVLCELESVLKNATFLSIDGEFTGLNSGP--EAGPFDTPAQYYGKLRAGSMD 59
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F ++QF + F + +K YNF++FP+ + P F CQ S + +A + FD
Sbjct: 60 FLLVQFGLSVFTYDSETNKYSQRSYNFYVFPK-PMNRQAPDSRFMCQASSIVFLANQDFD 118
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN GI YL + E + RM + P +S D IE + SR++++
Sbjct: 119 FNKLFKHGIPYLCASDEEKLVKRMEEKQKLKEENNQDIIP-ISDNDRPQIEEICSRIENF 177
Query: 209 KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDF--SDV 266
SD K +TID C+ +LV + V
Sbjct: 178 ----LASDAK-----------------------ELTIDRCNGFMRRLVYQEARARWPDKV 210
Query: 267 LVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQK 326
+ I RA +E KD KRE + E K+ G ++ I S+K
Sbjct: 211 RIETKIENTWQCLLVQRAGTKEEEEGKDNEKREKEKLEV---KQAVGLSSLLKKIVESEK 267
Query: 327 PLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDV 369
+V HN L D I +F PLP + EF + FP ++D
Sbjct: 268 IIVGHNMLLDLCHIIHQFFTPLPSDYLEFKSLIHGLFPNLLDT 310
>gi|297478860|ref|XP_002690421.1| PREDICTED: poly(A)-specific ribonuclease (PARN)-like domain
containing 1 [Bos taurus]
gi|296483863|tpg|DAA25978.1| TPA: poly(A)-specific ribonuclease (PARN)-like domain containing
1-like [Bos taurus]
Length = 524
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 139/318 (43%), Gaps = 47/318 (14%)
Query: 63 SFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPF---KLQASKVIAYPYNFHLFP 119
+ S P ++S FD P YLK + + ++F I Q + F + +++K +A+ NF LFP
Sbjct: 30 NLSGP-QQISLFDLPSEWYLKTRQSVQQFTICQIGLSVFSSIEGESNKYVAHSCNFFLFP 88
Query: 120 RDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVD 179
G+ F+ Q S + + + GFD+N + +GI Y++E QE +K
Sbjct: 89 T---TFGVLDSEFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQEKKIK---------- 135
Query: 180 HATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGS 239
H + + S D I+ V V W + + D T + G + F
Sbjct: 136 HNILTGNWKVRSSLDKDQIKVVIDEVTRWLDLAEEGDWMTLPGIA--------GFQAF-- 185
Query: 240 RPSMTIDVCSERQVQLVL-KMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKR 298
+VQLVL K L D VL + K TQ + T+S + + K
Sbjct: 186 ------------EVQLVLRKALPDIWTVLRDQGVIVKKVSTQHRWYLETTSCDRESCWKE 233
Query: 299 ELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICS 358
++ RGF ++ ++KPLV HN + D +H KF PLP + +EF +
Sbjct: 234 KILL-------SARGFSVFFQMLVKARKPLVGHNMMMDLLHLHEKFFRPLPESYDEFKLN 286
Query: 359 LRLAFPQVIDVNYLLKDI 376
+ FP +ID + KDI
Sbjct: 287 IHNLFPVLIDTKNVTKDI 304
>gi|119605517|gb|EAW85111.1| poly(A)-specific ribonuclease (deadenylation nuclease), isoform
CRA_b [Homo sapiens]
Length = 640
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 96/385 (24%), Positives = 175/385 (45%), Gaps = 36/385 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFA- 87
+I ++NF +L ++ I +DF A+ + +G P T FDTPE + F
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERCFISLFQH 61
Query: 88 AERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKE 145
+ F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +
Sbjct: 62 SMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQ 120
Query: 146 GFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRV 205
GFDFN +GI YL++ +E ++ + + ++++ + ALS V
Sbjct: 121 GFDFNKVFRNGIPYLNQEEERQLREQYD-----EKRSQANGAGALSY------------V 163
Query: 206 KHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 265
+ C + + + + + + + Q ++ ++ C+ Q +L+ + L
Sbjct: 164 SPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTL----S 219
Query: 266 VLVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLIS 322
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I+
Sbjct: 220 WKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIA 279
Query: 323 ASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM 382
S K ++ HN L D +F PLP +++EF FP+++D L+ P K +
Sbjct: 280 NSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQPFKDI 338
Query: 383 TNISATIAYLKNRF----FAPIEME 403
N + ++A L+ R F P ++E
Sbjct: 339 IN-NTSLAELEKRLKETPFNPPKVE 362
>gi|261335987|emb|CBH09267.1| putative poly(A)-specific ribonuclease (parn) [Heliconius
melpomene]
Length = 624
Score = 102 bits (253), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 97/354 (27%), Positives = 161/354 (45%), Gaps = 55/354 (15%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T+ NF E+L I I+ +DF+ + + TG + VS FD+P+ Y +
Sbjct: 2 EVTRKNFKEALPLIGESIAKADFLVIDTEFTGLING--RNVSMFDSPQEYYNTLLNGSTD 59
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F ++Q+ +C F + + YNF LFPR P F CQ+S L +A +GFD
Sbjct: 60 FLLIQYGLCAFYWNDEEKHYMNDAYNFFLFPRGH---PGPEKIFLCQSSSLDFLASQGFD 116
Query: 149 FNTCIYDGISYLSEAQESTVKVRM----------GNPMAVDHATKSSSSPALSVADTVFI 198
FN I +GISY++E ES ++ + +P+ + K + D
Sbjct: 117 FNKLIKEGISYMTEPIESRLRENLTERQSRILNDKDPIVIPDENKQ------QIED--IC 168
Query: 199 ERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLK 258
E+VR+ + +N + +I+ A + R+++ ++ GSR + + + K
Sbjct: 169 EKVRTFLD--ENKTDEMEIERCNAFI---RRLLF--QELGSR--------FKDEAFVETK 213
Query: 259 MLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVI 318
+LE+ S VL + R S + KD KRE + E+ + GF +V
Sbjct: 214 VLENKSRVL------------KVTRIKSASDSKSKDDQKREKEW---EEFEEAVGFSKVA 258
Query: 319 DLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
+IS S+K +V HN L D S F PLP + F FP+++D Y+
Sbjct: 259 RMISQSEKLVVGHNMLLDVLHTLSHFFQPLPEDYASFKEFAHCMFPRLLDTKYM 312
>gi|431910469|gb|ELK13541.1| Poly(A)-specific ribonuclease PARN [Pteropus alecto]
Length = 635
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 88/350 (25%), Positives = 158/350 (45%), Gaps = 47/350 (13%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 77 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTTLTNGFDTPEERYQKLKKHS 136
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 137 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 195
Query: 147 FDFNTCIYDGISYLSEAQESTV-------KVRMGNPMAVDHATKSSSSPALSVAD--TVF 197
FDFN +GI YL++ +E + +++ A+ + + ++S +++ + F
Sbjct: 196 FDFNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGAGALSYVSPNTSKCPVTIPEDQKKF 255
Query: 198 IERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVL 257
I++V +++ +L E+ ++ +D C+ Q +L+
Sbjct: 256 IDQVVEKIED-----------------------LLKSEE---NKNLDLDPCTGFQRKLIY 289
Query: 258 KMLEDFSDVLVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGF 314
+ L P I + T+ R ++ S ++++ +RE Q EQ + GF
Sbjct: 290 QTLS----WKYPKGIHVETLETEKKERYIVVSKVDEEERKRREQQKHAKEQEELNDAVGF 345
Query: 315 REVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP 364
VI I+ S K ++ HN L D +F PLP N + ++ L+ P
Sbjct: 346 SRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPAKSNTAVNTVALSLP 395
>gi|443696772|gb|ELT97394.1| hypothetical protein CAPTEDRAFT_177560 [Capitella teleta]
Length = 612
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/361 (24%), Positives = 156/361 (43%), Gaps = 58/361 (16%)
Query: 36 NFNESLSEIKNHISSSDFIAVSLQNTGS-------------FSSPWHRVSTFDTPETAYL 82
+F ESL I I + F+++ + TG F S W DTPE Y
Sbjct: 12 DFKESLPLISQAIQDASFVSIDCEMTGDSLLTSFLCLIQSGFESHW-----MDTPEDRYN 66
Query: 83 KAKFAAERFQILQFAICPF--KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLT 140
K + A F ++QF +C F K + + + +NF++FPR + FTCQ+S +
Sbjct: 67 KLRQGAMPFNVIQFGLCTFNKKEDSKQYSVHAFNFYIFPR-PVNSDATDVRFTCQSSSID 125
Query: 141 AMAKEGFDFNTCIYDGISYLS--EAQESTVKVRMGNPMAVDHATKSSSSPALSVADTV-- 196
+ FDFN C +GISY++ E T K+ + A + SP+ S+ + +
Sbjct: 126 FLINHNFDFNKCFKEGISYMNCDEELHVTKKLEQRHAEAAARDAQRLLSPSRSLHNDLKP 185
Query: 197 ----FIERVRSRVKHWKNACTDS-DIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSER 251
+++ +R ++ ++ + +S + A + L +L G ++ ++ + +
Sbjct: 186 GQKQYMQDLRIKITNFVKSSNESLSLDPANAFLRKLTYNLLHG-KYPNQIHVQTKTNEKH 244
Query: 252 QVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRV 311
Q L+L+ + +DV E+ + ++R Q E +
Sbjct: 245 QQYLLLQKISSKTDV------------------------ENIEKMRRNSQLGEVQD---A 277
Query: 312 RGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNY 371
GF +VI L+ S+K ++ HN L D + KF A LP + EF FPQ+ID
Sbjct: 278 VGFAKVIQLLRESEKLIIGHNMLLDLLHMVDKFCAVLPQSYEEFKLLASSVFPQIIDTKV 337
Query: 372 L 372
+
Sbjct: 338 M 338
>gi|301779938|ref|XP_002925390.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Ailuropoda
melanoleuca]
Length = 526
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 85/312 (27%), Positives = 134/312 (42%), Gaps = 46/312 (14%)
Query: 69 HRVSTFDTPETAYLKAKFAAERFQILQFAICPF---KLQASKVIAYPYNFHLFPRDELKM 125
++S FD P YLK + + ++F I Q + F + + +K +A+ NF LFP
Sbjct: 37 QQISLFDLPSEWYLKTRRSVQQFTICQIGLSVFSSIEGETNKYVAHSCNFFLFPT---TF 93
Query: 126 GMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSS 185
G+ FT Q S + + + GFD+N + +GI Y++E QE +K H +
Sbjct: 94 GILDSEFTFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQEKKIK----------HNILTG 143
Query: 186 SSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTI 245
+ S D I+ V V W ++ + D T + G + F
Sbjct: 144 NWRVRSSLDKDQIKVVIDEVTRWLDSAEEGDWMTLPGIA--------GFQAF-------- 187
Query: 246 DVCSERQVQLVLKM-LEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFE 304
+VQLVL+ L D VL I K Q R L ++ D+ +E
Sbjct: 188 ------EVQLVLRQALPDIWTVLRDQGIIVKKVNKQH-RWYLENTSCDRASCWKEKILLS 240
Query: 305 FEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP 364
RGF ++ +QKPLV HN + D +H KF PLP + ++F ++ FP
Sbjct: 241 ------ARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKLNIHNLFP 294
Query: 365 QVIDVNYLLKDI 376
+ID + +DI
Sbjct: 295 VLIDTKNVTRDI 306
>gi|328709367|ref|XP_001946252.2| PREDICTED: poly(A)-specific ribonuclease PARN-like [Acyrthosiphon
pisum]
Length = 631
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 112/448 (25%), Positives = 194/448 (43%), Gaps = 49/448 (10%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
+ NF + L EI+ I+ DFIA+ + TG + VS FDT Y K + F
Sbjct: 3 VVNENFYQLLPEIEQAIAECDFIAIDGEFTGLHNGTM--VSIFDTAAQYYQKLRSNCMDF 60
Query: 92 QILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
++QF +C K + K YNF+ FP+ + P F CQ+S + ++ FDF
Sbjct: 61 LMVQFGLCAVKYNTEKKKFTYRAYNFYTFPK-PMSRYAPDCRFLCQSSSMEFLSNHNFDF 119
Query: 150 NTCIYDGISYLSEAQESTVKVRMGNPM---AVDHATKSSSSPALSVADT--VFIERVRSR 204
N GI +L+ E ++ + N + T S S + + D IE +
Sbjct: 120 NKLFKHGIPFLTVPDEQVLQNELLNRYKQNCLQAQTPSKVSDCIPIPDNHKADIETACEK 179
Query: 205 VKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFS 264
VK + T S++ + +RK++ E + P + +V L +++ED
Sbjct: 180 VKELLESETISEVIIAEKTNSFVRKLIYQ-EVYKRYP--------DTKVSLQSRIVEDIG 230
Query: 265 DVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISAS 324
+V+V A G T+ + A + ++RE + E K V GF V+ I AS
Sbjct: 231 NVMV-----AFKGRTKLLMA--------HERMERE----QIELEKAV-GFSAVLKKIIAS 272
Query: 325 QKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL-----LKDIGPV 379
KP+V HN D + +F PLP + +EF ++ + +D Y+ LK
Sbjct: 273 NKPIVGHNMTLDVCHMIHQFCLPLPSSYSEFQAMVKTISYRFLDTKYISGTEPLKGFFGS 332
Query: 380 KKMTNISATIAYLKNRFFAPIEMEIPNQANENE-GKIH--GHNVVKICQLFGKLCSI--- 433
+ ++ ++A + + + +E E+P E K+H G++ +F LC++
Sbjct: 333 TVLNDLKKSLAE-QCQNYTDLEPEVPEVGYSEEISKLHDAGYDAYLTSTVFVNLCNLYAK 391
Query: 434 LKITPDAIESSDDFLASAINRYANIFYS 461
+K + I + +L N+ I Y+
Sbjct: 392 VKGIKEHISTDSSYLKQYENKLFMIRYN 419
>gi|156384950|ref|XP_001633395.1| predicted protein [Nematostella vectensis]
gi|156220464|gb|EDO41332.1| predicted protein [Nematostella vectensis]
Length = 449
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 85/345 (24%), Positives = 134/345 (38%), Gaps = 39/345 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T++NF EI I S F+A+ + TG +++ + FD E Y K K +
Sbjct: 3 EVTRSNFEAHFEEISGAIEKSVFVAIDTEFTGLYANDTCKPCLFDNAEAIYKKQKKTVSQ 62
Query: 91 FQILQFAIC---PFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGF 147
I QF + P + A+ +N +LFP G F CQ S L + + F
Sbjct: 63 VLISQFGLSMFEPVPDHPGRYKAHVFNCYLFP---CSFGAADCRFLCQASSLEFLCQHDF 119
Query: 148 DFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKH 207
DFN +Y G+ +L+E QES V+ + HA S L D I ++V
Sbjct: 120 DFNKFVYQGVPFLNEEQESMVRSQHNQKTL--HA--GMQSLQLRDIDDQIISCSCNKVDE 175
Query: 208 WKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVL 267
W D T A + ++L E Q Q + L L
Sbjct: 176 WLKTANIGDNMTLNAHTAVGQYLLL----------------LELQKQSTMNQLRYEVQDL 219
Query: 268 VPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKP 327
++I + ++ + E++ LL V GF + L+ +KP
Sbjct: 220 YQIVITRQTNCSEEAMKKHLAEQEERILLS-------------VIGFSRIFKLLVKHKKP 266
Query: 328 LVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
L+ HN D I+ K PLP ++F + FP V D ++
Sbjct: 267 LIGHNMFTDLMLIYDKLYKPLPDCYDDFKADIHRLFPYVYDTKHI 311
>gi|332245325|ref|XP_003271811.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 isoform 1 [Nomascus
leucogenys]
Length = 520
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 142/329 (43%), Gaps = 50/329 (15%)
Query: 55 AVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKL---QASKV 108
+ ++ TG + S P ++S FD P YLK + + ++F I Q + F +A+K
Sbjct: 15 GLDMEFTGLRSNLSGP-QQISLFDLPSEWYLKTRQSVQQFTICQIGLSVFSAVEGEANKY 73
Query: 109 IAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTV 168
IA+ NF+LFP G+ F+ Q S + + + GF++N + +GI Y++E QE +
Sbjct: 74 IAHSCNFYLFPT---TFGILDSEFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQEKKI 130
Query: 169 KVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLR 228
+ H + + S D I+ V V W + + D T +
Sbjct: 131 R----------HDILTGNWRVRSTPDKDQIKVVIDEVTRWLDLAKEGDWMTLPGIT---- 176
Query: 229 KIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVPLIIPAKGGGTQAVRAVLT 287
G + F +VQLVL+ L + VL + K Q R +
Sbjct: 177 ----GFQAF--------------EVQLVLRQALPNIWTVLKDEGVVVKKVSKQHRRYLQN 218
Query: 288 SSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAP 347
+S + + K + RGF ++ +QKPLV HN + D +H KF P
Sbjct: 219 TSCDRESCWKENILL-------SARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRP 271
Query: 348 LPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
LP + ++F ++ FP +ID + KDI
Sbjct: 272 LPESYDQFKQNIHRLFPVLIDTKSVTKDI 300
>gi|358413893|ref|XP_872807.3| PREDICTED: poly(A)-specific ribonuclease (PARN)-like domain
containing 1 [Bos taurus]
Length = 502
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 133/307 (43%), Gaps = 46/307 (14%)
Query: 74 FDTPETAYLKAKFAAERFQILQFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSY 130
FD P YLK + + ++F I Q + F + +++K +A+ NF LFP G+
Sbjct: 18 FDLPSEWYLKTRQSVQQFTICQIGLSVFSSIEGESNKYVAHSCNFFLFPT---TFGVLDS 74
Query: 131 SFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPAL 190
F+ Q S + + + GFD+N + +GI Y++E QE +K H + +
Sbjct: 75 EFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQEKKIK----------HNILTGNWKVR 124
Query: 191 SVADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSE 250
S D I+ V V W + + D T + G + F
Sbjct: 125 SSLDKDQIKVVIDEVTRWLDLAEEGDWMTLPGIA--------GFQAF------------- 163
Query: 251 RQVQLVL-KMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK 309
+VQLVL K L D VL + K TQ + T+S + + K ++
Sbjct: 164 -EVQLVLRKALPDIWTVLRDQGVIVKKVSTQHRWYLETTSCDRESCWKEKILL------- 215
Query: 310 RVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDV 369
RGF ++ ++KPLV HN + D +H KF PLP + +EF ++ FP +ID
Sbjct: 216 SARGFSVFFQMLVKARKPLVGHNMMMDLLHLHEKFFRPLPESYDEFKLNIHNLFPVLIDT 275
Query: 370 NYLLKDI 376
+ KDI
Sbjct: 276 KNVTKDI 282
>gi|194227480|ref|XP_001491677.2| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Equus caballus]
Length = 627
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/312 (26%), Positives = 134/312 (42%), Gaps = 46/312 (14%)
Query: 69 HRVSTFDTPETAYLKAKFAAERFQILQFAICPF---KLQASKVIAYPYNFHLFPRDELKM 125
++S FD P YLK + + ++F I Q + F + +++K +A+ NF LFP
Sbjct: 138 QQISLFDLPSEWYLKTRQSVQQFTICQIGLSVFSSIEGESNKYVAHSCNFFLFP---TTF 194
Query: 126 GMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSS 185
G+ F+ Q S + + + GFD+N + +GI Y++E QE +K H +
Sbjct: 195 GILDSEFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQEKKIK----------HNILTG 244
Query: 186 SSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTI 245
+ S D I+ V V W + + D T + G + F
Sbjct: 245 NWSVHSSPDKDQIKVVIDEVTRWLDLAAEGDWMTLPGIA--------GFQAF-------- 288
Query: 246 DVCSERQVQLVLKM-LEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFE 304
+VQLVL+ L D VL + K Q R L ++ D++ +E
Sbjct: 289 ------EVQLVLRQALPDIWTVLRDQGVVVKKVSKQH-RWYLENTSGDRESCWKEKILLS 341
Query: 305 FEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP 364
RGF ++ +QKPLV HN + D +H KF PLP + +F ++ FP
Sbjct: 342 ------ARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYEQFKLNVHNLFP 395
Query: 365 QVIDVNYLLKDI 376
+ID + KDI
Sbjct: 396 VLIDTKNVTKDI 407
>gi|390345831|ref|XP_003726420.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Strongylocentrotus
purpuratus]
Length = 536
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 90/346 (26%), Positives = 143/346 (41%), Gaps = 48/346 (13%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
+I +++ + I I S FIA+ + TG ++ S FDTP Y K + A +
Sbjct: 2 EINRSSHSSESKNILQSIQDSSFIAIDTEFTGLHATQSDINSLFDTPAQRYEKLRRMAMQ 61
Query: 91 FQILQFAICPF-KLQASKVI-AYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
+ I Q + F K+ + A+ YNFHLFPR + FTCQ S + + K F+
Sbjct: 62 YTICQLGVSAFVKVPNTNTYEAHTYNFHLFPR---SISSLDARFTCQASSIEFLCKHNFN 118
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN Y+G+SYL+ +E ++ S A T ++ R
Sbjct: 119 FNKLFYEGVSYLTRDEEEELR---------------------SQAQTKPVQLAR------ 151
Query: 209 KNACTDSDIKTEAALVTS--LRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 266
D D++ EA S L + G E +T+ E L+ +++D
Sbjct: 152 ---YMDEDLQKEAISTISEWLSEAHAGDE-------LTVGQYEELDGLLLQLVIQDS--- 198
Query: 267 LVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQK 326
PL+ T V + E+K+ L+ + ++ GF V + S+K
Sbjct: 199 -FPLLNTCFDATTTRQMKVRVMATENKEGLEEDQVKLGHRVVDKLLGFTAVFRALVESKK 257
Query: 327 PLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
P++ HN L D KF PLP + + F L FP++ D YL
Sbjct: 258 PIIGHNLLTDLMLFFQKFHNPLPRSYSTFKVQLNELFPKIYDTKYL 303
>gi|344295143|ref|XP_003419273.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Loxodonta africana]
Length = 531
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 146/333 (43%), Gaps = 50/333 (15%)
Query: 51 SDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPF---KLQ 104
+DF+ + ++ TG + S P ++S FD P YLK++ + ++F I Q + F K +
Sbjct: 22 ADFVGLDIEFTGLRSTLSRP-QQISLFDLPSEWYLKSRQSVQQFTICQIGLSVFSRVKGE 80
Query: 105 ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQ 164
++K +++ NF LFP G+ F+ Q S + + + GFD+N + +GI Y++E Q
Sbjct: 81 SNKYVSHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQ 137
Query: 165 ESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEAALV 224
E +K H+ + S D I+ V RV W + D T +
Sbjct: 138 ERKIK----------HSILCGNWRVRSSLDKDQIKMVIDRVTRWLALAEEGDWMTLPGIT 187
Query: 225 TSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVPLIIPAKGGGTQAVR 283
G + F +VQLVL+ L + V + K Q
Sbjct: 188 --------GFQAF--------------EVQLVLQQALPNIWTVPKDQGVTVKKVSKQHRW 225
Query: 284 AVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSK 343
+ +S E + K ++ + +G + ++ +QKPLV HN L D +H K
Sbjct: 226 YLENTSCERERCWKEKILLY-------AKGLSVLFQMLVKAQKPLVGHNMLMDLLHLHEK 278
Query: 344 FLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
F LP + ++F ++ FP +ID + KDI
Sbjct: 279 FFRHLPESYDQFKLNIHHLFPILIDTKNVTKDI 311
>gi|340723245|ref|XP_003400002.1| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
PARN-like domain-containing protein 1-like [Bombus
terrestris]
Length = 561
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 154/353 (43%), Gaps = 58/353 (16%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+ ++ +NF+ I+N I+++ FIA+ + +G + + S FDT Y K
Sbjct: 1 MNEVLNSNFDAVYPRIENAINNAAFIAIDAEMSGIHTERDLKNSLFDTLNDRYTAWKRNI 60
Query: 89 ERFQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
++F I+QF I F SK A + F+LFPR + + + + + + + K G
Sbjct: 61 QQFVIVQFGITTFYRVPSKNAYKADSFTFYLFPR---SIPLKNRQLSWEVEAMDFLYKHG 117
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVA---DTVFIERVRS 203
FDFN + GISY+ E E + +DH T+ LS+ + + +S
Sbjct: 118 FDFNKFLVGGISYIDEIDEK---------LMLDHITQGDIEDCLSLLSYDEEENFKECKS 168
Query: 204 RVKHW-KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLED 262
+V W N ++ +K E +T + + VL + + +
Sbjct: 169 KVCEWISNKSENAPLKLET--ITPMVQYVLHKD-----------------------LRNN 203
Query: 263 FSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKR---ELQTFEFEQNKRVRGFREVID 319
++D+ +++ + S + DL K+ E +F GF +V
Sbjct: 204 YNDIWTT-------SDCKSIDVMKISGNAQDDLSKKNNLEDVLLDF-----YLGFSKVFK 251
Query: 320 LISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
L+S+S+K ++ HN L D F+H +F PLP + EF ++ FPQ+ D +L
Sbjct: 252 LLSSSKKMIIGHNILLDLMFMHQQFYKPLPDSYKEFKSNIHTLFPQIYDTKFL 304
>gi|114610059|ref|XP_518838.2| PREDICTED: poly(A)-specific ribonuclease (PARN)-like domain
containing 1 isoform 4 [Pan troglodytes]
gi|397471748|ref|XP_003807444.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 isoform 1 [Pan paniscus]
gi|410307434|gb|JAA32317.1| poly(A)-specific ribonuclease (PARN)-like domain containing 1 [Pan
troglodytes]
Length = 520
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 138/314 (43%), Gaps = 50/314 (15%)
Query: 69 HRVSTFDTPETAYLKAKFAAERFQILQFAICPFKL---QASKVIAYPYNFHLFPRDELKM 125
++S FD P YLK + + ++F I Q + F +A+K IA+ NF+LFP
Sbjct: 31 QQISLFDLPSEWYLKTRQSVQQFTICQIGLSVFSAIEGEANKYIAHSCNFYLFPT---TF 87
Query: 126 GMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVK--VRMGNPMAVDHATK 183
G+ F+ Q S + + + GF++N + +GI Y++E QE ++ + GN +
Sbjct: 88 GILDSEFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQEKKIRHDILTGN-------WR 140
Query: 184 SSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSM 243
SSP D I+ V +V W + D T + G + F
Sbjct: 141 VRSSP-----DKDQIKVVIDQVTRWLELAKEGDWMTLPGIT--------GFQAF------ 181
Query: 244 TIDVCSERQVQLVLKM-LEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQT 302
+VQLVL+ L + VL + K Q R L ++ D++ +E
Sbjct: 182 --------EVQLVLRQALPNIWTVLKDEGVVVKKVSKQH-RWYLQNTSCDRESCWKENIL 232
Query: 303 FEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLA 362
RGF ++ +QKPLV HN + D +H KF PLP + N+F ++
Sbjct: 233 LS------ARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYNQFKQNIHSL 286
Query: 363 FPQVIDVNYLLKDI 376
FP +ID + KDI
Sbjct: 287 FPVLIDTKSVTKDI 300
>gi|145495491|ref|XP_001433738.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124400858|emb|CAK66341.1| unnamed protein product [Paramecium tetraurelia]
Length = 526
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 86/365 (23%), Positives = 155/365 (42%), Gaps = 76/365 (20%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
+T+ N+ +L+ I+ I +++IA+ + TG +S R S D+ + Y K K RF
Sbjct: 3 LTRYNYLHNLAFIQQRIKEANYIALDFEFTGVLASSLLRNSLLDSFQMRYWKVKENVRRF 62
Query: 92 QILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSY---SFTCQTSYLTAMAKEG 146
+Q +C F+ A + VIA+P+NF++FP G+ Y F ++ ++ +
Sbjct: 63 LPIQMGLCTFREDANSNNVIAHPFNFYIFP-----YGVDGYLDKQFQLSSNSISFLTNNN 117
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN +GI YLS E ++ DT I+ +R+ ++
Sbjct: 118 FDFNRTFNEGILYLSHQDEKILR------------------------DTKRIQDLRNEIR 153
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 266
+ T ++ +++ + EQF + V ++ Q ++ +K L+
Sbjct: 154 YLDKIVT-------FEMINFVKQYKVQVEQF-------LKVSNDPQFEIPIKRLK----- 194
Query: 267 LVPLIIPAKGGGTQAVRAVLTSSDE-----DKD-LLKREL------------QTFEFEQN 308
+ +++ S E D D L+KRE+ + E+
Sbjct: 195 -----VKVYRHFIESITKEFGKSYEFYCKYDSDILIKREILYIVKGPEPPETKKQNVEEA 249
Query: 309 KRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVID 368
G R ++D IS + P++ HN L D I+ KF LP + EFI + FP + D
Sbjct: 250 NEFAGVRILLDQISQQKTPIILHNGLMDIMHIYDKFFETLPDSRGEFISKVNSLFPVIYD 309
Query: 369 VNYLL 373
+L+
Sbjct: 310 TKFLI 314
>gi|449277827|gb|EMC85849.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein
1, partial [Columba livia]
Length = 485
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 137/332 (41%), Gaps = 74/332 (22%)
Query: 72 STFDTPETAYLKAKFAAERFQILQFAICPFKLQAS-KVIAYPYNFHLFPRDELKMGMPSY 130
S FD+P YLKA+ + +RF + Q + F + S K + + YNF+LFP +G+
Sbjct: 1 SLFDSPMERYLKARQSVQRFTVTQLGLAIFSNENSNKYVVHSYNFYLFPA---TLGVMDV 57
Query: 131 SFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPAL 190
FT S + ++ GFD+N + DGI Y++E QE + + S
Sbjct: 58 EFTLSASSIQFLSHYGFDYNKFLKDGIPYMNEEQEKIFSQHL----------LAGSWKVS 107
Query: 191 SVADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSE 250
S D +++ V W A + D T + + G + F
Sbjct: 108 SDLDRDVLKKAIDEVTCWIAAAEEDD--------TMVLHDLSGYQMF------------- 146
Query: 251 RQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLL--KRELQTFEFEQN 308
+VQLVL+ QA++ V T DK ++ K Q + +N
Sbjct: 147 -EVQLVLR---------------------QALQNVWTQPLGDKKVIVKKVSFQHRQLLEN 184
Query: 309 K------------RVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFI 356
RGF + + ++KPLV HN L D +H KF PLP + EF
Sbjct: 185 SPHDCCQKELILLSARGFTNLFQTLVKAKKPLVGHNMLMDLMHLHDKFYKPLPESYEEFK 244
Query: 357 CSLRLAFPQVIDVNYLLKDIG---PVKKMTNI 385
++ + FP +ID + K I P +++N+
Sbjct: 245 RNIHILFPVLIDTKTITKSIWKKYPFPRVSNL 276
>gi|307192585|gb|EFN75773.1| Poly(A)-specific ribonuclease PARN [Harpegnathos saltator]
Length = 600
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 93/365 (25%), Positives = 161/365 (44%), Gaps = 45/365 (12%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
+IT NF + LSE+ NH+ + FI + + TG S+P FDT Y K + +
Sbjct: 2 EITIQNFRDVLSELDNHLQHATFICIDAEFTGLNSAP--DTGPFDTLAQYYTKLRTGSMS 59
Query: 91 FQILQFAICPFKLQAS--KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F ++QF + F + K Y F++FP+ +L P F CQ S + +A + FD
Sbjct: 60 FLLVQFGLSLFTYNSDTKKYSQRSYTFYVFPK-QLNYRAPDCRFMCQASSIAFLASQNFD 118
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN GI YL+ +E + RM + P +S D IE + S+++ +
Sbjct: 119 FNKLFKHGIPYLNINEEEKLIKRMEERQRQKEEYNDAVIP-ISDTDKPQIEEICSKIEDF 177
Query: 209 KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLED-FSDVL 267
+ + +TI+ C++ +L+ + ++ + D
Sbjct: 178 LAS---------------------------DKEELTIERCNKFMRRLIYQEAKNRWPD-- 208
Query: 268 VPLIIPAKGGGTQ---AVRAVLTSSDED-KDLLKRELQTFEFEQNKRVRGFREVIDLISA 323
+ I +K T +V+ V T E+ K+ +RE + EF+Q G ++ +
Sbjct: 209 -KVRIESKIENTWQCLSVQKVGTKEQEEAKENQRREKEKLEFDQ---AVGVSNLLKKVLN 264
Query: 324 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMT 383
S K +V HN L D I +F+ PLP + +EF + FP ++D + + P K+
Sbjct: 265 SGKTIVGHNMLLDLCHIIRQFVTPLPADYSEFKNLVHDLFPSLLDTKVICQS-QPFKEHI 323
Query: 384 NISAT 388
+ S+T
Sbjct: 324 SPSST 328
>gi|326915669|ref|XP_003204136.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Meleagris gallopavo]
Length = 514
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 137/318 (43%), Gaps = 67/318 (21%)
Query: 72 STFDTPETAYLKAKFAAERFQILQFAICPFKLQAS-KVIAYPYNFHLFPRDELKMGMPSY 130
S FD+P Y K + + +RF I Q + F + S K + + YNF LFP +G+
Sbjct: 17 SLFDSPAERYQKVRRSVQRFTITQLGLAIFSEENSNKYVVHSYNFFLFPS---TLGVMDA 73
Query: 131 SFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPAL 190
T S + ++ GFD+N + DGI Y++E QE + R+ ++ + K S+ +
Sbjct: 74 ELTLSASSIQFLSHYGFDYNKFLKDGIPYMNELQEKILSQRL-----LEGSWKVYSALNM 128
Query: 191 SVADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSE 250
+V +++ V W A + D +M + S+
Sbjct: 129 NV-----VKKAIDEVTCWIAAAKEGD-------------------------AMILQELSD 158
Query: 251 RQ---VQLVLKM---------LEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKR 298
Q VQLVL+ L D ++VLV + P R +L SS D ++
Sbjct: 159 SQMLDVQLVLRQALPNVWTQPLRD-NEVLVKKVSPQH-------RRLLESSSHDS--CRK 208
Query: 299 ELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICS 358
EL RGF + +I ++KPLV HN L D +H KF PLP + EF +
Sbjct: 209 ELIL------TSARGFTNLFQIIVKAKKPLVGHNMLMDLCHLHDKFYNPLPESYEEFKKN 262
Query: 359 LRLAFPQVIDVNYLLKDI 376
+ FP +ID + K I
Sbjct: 263 IHHLFPVLIDTKTVTKSI 280
>gi|215697086|dbj|BAG91080.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 502
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 105/411 (25%), Positives = 190/411 (46%), Gaps = 58/411 (14%)
Query: 237 FGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDK--- 293
F RP++ ++ + Q++L+ ++L LV + + G ++ R V T ++EDK
Sbjct: 37 FKMRPAIMLNGFTSHQLKLIRQILRTHFRDLVYVCTFLEDGVSEK-RVVYTDTNEDKISL 95
Query: 294 ------DLLK-RELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLA 346
DLLK RE + K G R VIDL+++ +K +V H+ D I+SKF+
Sbjct: 96 MKNVREDLLKSREAKV------KSAVGIRHVIDLLASERKLIVGHSCFLDIAQIYSKFVG 149
Query: 347 PLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVK-----KMTNISATIAYLKNRFFAPIE 401
PLP +M EF S+ FP + D +L+ V+ K ++S+ + L AP E
Sbjct: 150 PLPSSMEEFALSINRMFPHMADTRHLMSVNDAVQYRMRHKSKSLSSAFSLLCPALHAPDE 209
Query: 402 -------MEIPNQANE------NEGKIH--GHNVVKICQLFGKLCSILKITPDAIESSDD 446
+ I +A+E G H G++ +F +LC+ I + + +D
Sbjct: 210 KSSTLPSVRIEVEADETVLSCFTSGAKHEAGYDAFMTGCVFVQLCAYHGIKFEQLSPLED 269
Query: 447 FLASAINRYANIFYSLP----GSSQEPTNEEIRGWTNDKRKVSC---EDVVFLWGFRERI 499
LA+ IN +I P G+ + + R KR+ ++V+ +WGF+ ++
Sbjct: 270 -LATNINLKKHINLLPPCWNSGTVLDLSTGTERPDAGYKRRYPAAVYDNVILIWGFQSKV 328
Query: 500 SAGILKNMLQGSHEVFAEA--FNVRMVDRSCAIVVFGKP-------GLSNTFKNVMNSKA 550
+K+ + +VF A +V +D + +V F K L T ++ ++ +
Sbjct: 329 RPKDIKDCIC---KVFGRASVTSVFPIDSTAVLVQFSKQESVNDFLDLKATLESADSAIS 385
Query: 551 VSGPLREMVSDG-LKAAGYETYQRVCSSGLWESALADALDKTLASHNCLSE 600
V PL ++ G +AA Y+TY+ +C S + + + AD + ++ N S+
Sbjct: 386 VLHPLSTILEGGKTRAAKYDTYRDICRSSVSKFSFADQAEAVCSTSNSESK 436
>gi|27735155|ref|NP_775787.1| poly(A)-specific ribonuclease PARN-like domain-containing protein 1
precursor [Homo sapiens]
gi|160419239|sp|Q8NA58.2|PNDC1_HUMAN RecName: Full=Poly(A)-specific ribonuclease PARN-like
domain-containing protein 1; Flags: Precursor
gi|21757367|dbj|BAC05101.1| unnamed protein product [Homo sapiens]
gi|85567674|gb|AAI12247.1| Poly(A)-specific ribonuclease (PARN)-like domain containing 1 [Homo
sapiens]
gi|119567998|gb|EAW47613.1| poly(A)-specific ribonuclease (PARN)-like domain containing 1,
isoform CRA_b [Homo sapiens]
gi|313883454|gb|ADR83213.1| poly(A)-specific ribonuclease (PARN)-like domain containing 1
(PNLDC1) [synthetic construct]
Length = 520
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 87/320 (27%), Positives = 140/320 (43%), Gaps = 51/320 (15%)
Query: 63 SFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKL---QASKVIAYPYNFHLFP 119
+ S P ++S FD P YLK + + ++F + Q + F +A+K IA+ NF+LFP
Sbjct: 26 NLSGP-QQISLFDLPSEWYLKTRQSVQQFTVCQIGLSVFSAIEGEANKYIAHSCNFYLFP 84
Query: 120 RDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVK--VRMGNPMA 177
G+ F+ Q S + + + GF++N + +GI Y++E QE ++ + GN
Sbjct: 85 T---TFGILDSEFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQEKKIRHDILTGN--- 138
Query: 178 VDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQF 237
+ SSP D I+ V V W + D T + G + F
Sbjct: 139 ----WRVRSSP-----DKDQIKVVIDEVTRWLELAKEGDWMTLPGIT--------GFQAF 181
Query: 238 GSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLL 296
+VQLVL+ L + VL + K Q R L ++ D++
Sbjct: 182 --------------EVQLVLRQALPNIWTVLKDEGVVVKKVSKQH-RWYLQNTSCDRESC 226
Query: 297 KRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFI 356
+E RGF ++ +QKPLV HN + D +H KF PLP + ++F
Sbjct: 227 WKENILLS------ARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFK 280
Query: 357 CSLRLAFPQVIDVNYLLKDI 376
++ FP +ID + KDI
Sbjct: 281 QNIHSLFPVLIDTKSVTKDI 300
>gi|197102228|ref|NP_001126488.1| poly(A)-specific ribonuclease PARN-like domain-containing protein 1
precursor [Pongo abelii]
gi|75070545|sp|Q5R6R6.1|PNDC1_PONAB RecName: Full=Poly(A)-specific ribonuclease PARN-like
domain-containing protein 1; Flags: Precursor
gi|55731677|emb|CAH92544.1| hypothetical protein [Pongo abelii]
Length = 520
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 137/318 (43%), Gaps = 47/318 (14%)
Query: 63 SFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKL---QASKVIAYPYNFHLFP 119
+ S P ++S FD P YLK + + ++F I Q + F +A+K A+ NF+LFP
Sbjct: 26 NLSGP-QQISLFDLPSEWYLKTRQSVQQFTICQIGLSVFSAIEGEANKYTAHSCNFYLFP 84
Query: 120 RDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVD 179
G+ F+ Q S + + + GF++N + +GI Y++E QE ++
Sbjct: 85 T---TFGILDSEFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQEKKIR---------- 131
Query: 180 HATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGS 239
H + + S D I+ V V W + + D T + G + F
Sbjct: 132 HDILTGNWRVRSSPDKDQIKVVIDEVTRWLDLAKEGDWMTLPGIT--------GFQAF-- 181
Query: 240 RPSMTIDVCSERQVQLVLKM-LEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKR 298
+VQLVL+ L + VL + K Q R L ++ D++ +
Sbjct: 182 ------------EVQLVLRQALPNIWTVLKDEGVVVKKVSKQH-RWYLQNTSCDRESCWK 228
Query: 299 ELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICS 358
E RGF ++ +QKPLV HN + D +H KF PLP + ++F +
Sbjct: 229 ENILLS------ARGFSAFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQN 282
Query: 359 LRLAFPQVIDVNYLLKDI 376
+ FP +ID + KDI
Sbjct: 283 IHSLFPVLIDTKSVTKDI 300
>gi|383864733|ref|XP_003707832.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Megachile
rotundata]
Length = 577
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 87/351 (24%), Positives = 147/351 (41%), Gaps = 57/351 (16%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T +NF E L E+ + + ++ FI + + TG S P FDTP Y K + +
Sbjct: 2 EVTSSNFQEVLIELDDVLKNASFIGIDGEFTGLHSGP--DPGAFDTPAQYYAKLRAGSMD 59
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F ++QF + F +A+K YNF++FPR L P F CQTS L+ +A +GFD
Sbjct: 60 FLLVQFGLSVFTFDKEANKYNQRSYNFYVFPR-PLNCAAPDCRFMCQTSCLSFLANQGFD 118
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN GI YL+ +E + R+ + T ++ D IE + SR++ +
Sbjct: 119 FNKLFKLGIPYLTMTEEEKLTKRLEKRQKLKEETPELV--PITDDDKPQIEDICSRIQEF 176
Query: 209 KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLV-----------L 257
+ T+ +TI+ C+ +LV L
Sbjct: 177 TESETE---------------------------ELTIEKCNAYMRRLVHQEVRIRWPNKL 209
Query: 258 KMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREV 317
K+ + L++ G + + +++K +++ + G +
Sbjct: 210 KVENRLENFGCTLVVQRLGTKEEEEEKEIKRKEKEKLEIQQAV------------GLSML 257
Query: 318 IDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVID 368
+ I+ S K +V HN L D I +F LP N EF + FP+V+D
Sbjct: 258 MRKIADSGKLIVGHNMLLDLCHIVHQFFGQLPENYLEFKALVHSLFPKVLD 308
>gi|328785451|ref|XP_623432.3| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Apis mellifera]
Length = 535
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/371 (23%), Positives = 160/371 (43%), Gaps = 53/371 (14%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+ ++ KTNF +++ ++++ FIA+ + TG +S + S FD+ Y K
Sbjct: 1 MNEVLKTNFKTLYPKLEIAVNNATFIAIDAEFTGLYSEEKLKHSFFDSFNDRYKLLKKNI 60
Query: 89 ERFQILQFAICPFKL----QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
++F I+QF I F+ KV +NF+LFP+ + + + Q + L + K
Sbjct: 61 QQFMIIQFGIATFRHVPYENTYKVDC--FNFYLFPKS---IPLKNRHLIWQVAALEFLCK 115
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRMGN---PMAVDHATKSSSSPALSVADTVFIERV 201
F+FN + +GIS+L E E +K + ++H T + ++
Sbjct: 116 HNFEFNKFLKEGISFLDETDEKLLKNYIKEDSLAYNLNHLTYEEENEFIN---------Y 166
Query: 202 RSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLE 261
++++ W + +K E S P + + ++ K +
Sbjct: 167 KTKISEWIANKSGETLKVET-----------------SNP--ILQYLIHKDIRHNYKNVW 207
Query: 262 DFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLI 321
SD II + +R + DK+ L++EL + GF V L+
Sbjct: 208 SISDDKSVNIIEISPNMHEFIR------ENDKETLEKELLDYYI-------GFSIVFKLL 254
Query: 322 SASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKK 381
++S+K +V HN L D F+H +F PLP + NEF ++ FPQ+ D +L ++ +
Sbjct: 255 ASSKKIIVGHNILLDLMFMHQQFYKPLPNSYNEFKKNIHELFPQIYDTKFLSYEVRKLFS 314
Query: 382 MTNISATIAYL 392
+S I+ L
Sbjct: 315 KEEVSWKISSL 325
>gi|260821597|ref|XP_002606119.1| hypothetical protein BRAFLDRAFT_125118 [Branchiostoma floridae]
gi|229291457|gb|EEN62129.1| hypothetical protein BRAFLDRAFT_125118 [Branchiostoma floridae]
Length = 490
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 9/163 (5%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
+IT+ NF + + ++ + + F+ + + TG + P + FDTP+ Y K + +
Sbjct: 2 EITRHNFKQVIDQVSEAVDEASFLCIDGEFTGLNNGP--ALHGFDTPQERYDKLRKGSLD 59
Query: 91 FQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F +QF +C FK + S+ +A P+NF++FPR L P F CQ S L +A +G D
Sbjct: 60 FLFVQFGLCAFKYETEESRFVARPFNFYIFPR-PLNRNAPDCRFLCQASSLHFLASQGMD 118
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALS 191
FN DGI YLS E +M + + HAT+ SP +
Sbjct: 119 FNKVFRDGIPYLSPVDEQ----QMRDTLDQKHATQQLHSPPFT 157
>gi|71413865|ref|XP_809055.1| ribonuclease [Trypanosoma cruzi strain CL Brener]
gi|70873378|gb|EAN87204.1| ribonuclease, putative [Trypanosoma cruzi]
Length = 590
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 98/374 (26%), Positives = 159/374 (42%), Gaps = 48/374 (12%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
Q+T+ F L + + S DF A + TG S+ S DTPE +Y + A R
Sbjct: 2 QVTRDKFPAVLPKFVELLKSCDFYAFDEEMTG-ISTAELPESITDTPEESYRAKRTVASR 60
Query: 91 FQILQFAICPFKLQ-------ASKVIAYPYNFHLFPR--DELKMGMPSYSFTCQTSYLTA 141
+ I+Q IC F + + +A P+NF LFP DE S S L
Sbjct: 61 YNIIQVGICLFHRENTAADSTPAHYVARPFNFVLFPHNSDEFNANERSRDVVLSPSSLAF 120
Query: 142 MAKEGFDFNTCIYDGISYLSEAQESTVKVRM-------------GNPMA-----VDHATK 183
+ + +F + +Y G++Y QE ++ R GN + K
Sbjct: 121 LRRHDMNFQSWVYQGMAYCDANQEEALRQRHEEKYRELDSIRNEGNQEVEGVSLLTEEEK 180
Query: 184 SSSSPALSVADTVFIERVRSRVKHW--KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRP 241
A+++A T F ER+++ ++ KNA + + A + +L I GG + P
Sbjct: 181 KWYDNAVTLAKT-FSERIQATLEQAKVKNAGQTAGM---AEVSAALDLIQSGGREVFLPP 236
Query: 242 --SMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQA-VRAVLTSSDEDKDLLKR 298
S + ER V+ + F ++L L +G +RAV E+++ L+
Sbjct: 237 QRSKSAREALERHVE------QHFHNLL--LTFRRQGAVHMGMLRAVFP---EERNRLRE 285
Query: 299 ELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICS 358
+ Q F + + GFR V + + S+KP V HN L D F+ + PLP ++ +F
Sbjct: 286 KEQVFREGELMNMLGFRLVFNALVESRKPCVGHNCLADLLFLLASLDGPLPDSLPKFKRR 345
Query: 359 LRLAFPQVIDVNYL 372
+ FP V D Y+
Sbjct: 346 MNELFPIVFDTKYI 359
>gi|357621648|gb|EHJ73417.1| hypothetical protein KGM_05205 [Danaus plexippus]
Length = 394
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/354 (23%), Positives = 144/354 (40%), Gaps = 43/354 (12%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
IT NFN+ I + S FI + T S + FDT + Y + K +
Sbjct: 3 ITNKNFNQEFDSIIKCLKKSCFIGFDAEFTAILSGECFKYRLFDTNKERYDRMKDEVCKM 62
Query: 92 QILQFAICPFKLQAS--KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
+ Q + F+ + I++ Y FHL P+ G + SFT Q S + + FD+
Sbjct: 63 IMNQVGLTMFQYDRDNDRYISHTYTFHLCPQ---VFGDINQSFTFQASAIRFLCLHNFDY 119
Query: 150 NTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWK 209
N YDG+ Y+S ++E+ +K ++ +++ + A+ + D ++ S V W
Sbjct: 120 NKFTYDGLPYMSRSEEAHIKKQLKEKTLLNNLIQ-----AMEMNDERKLQSYCSEVAKWL 174
Query: 210 NACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVP 269
TD I + P M V E + + P
Sbjct: 175 VNSTDDTIYLDI-----------------DNPIMRYIVHCELRNRF-------------P 204
Query: 270 LIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLV 329
++ G + + D D + T E V GF ++I+L++ +KP++
Sbjct: 205 EVLTTDSLGNSHKVLIYRNGDVD-GATSASMSTLEGNLITYVLGFSQIIELLAEYKKPII 263
Query: 330 AHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMT 383
HN D +HS+F+ PLP + F ++ FP + D Y+ ++G +K+T
Sbjct: 264 GHNMYLDTLLLHSQFIGPLPKRYSAFKKNINNLFPNMYDTKYISHEMG--RKLT 315
>gi|363731664|ref|XP_426152.3| PREDICTED: poly(A)-specific ribonuclease (PARN)-like domain
containing 1 [Gallus gallus]
Length = 577
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 135/314 (42%), Gaps = 59/314 (18%)
Query: 72 STFDTPETAYLKAKFAAERFQILQFAICPFKLQAS-KVIAYPYNFHLFPRDELKMGMPSY 130
S FD+P Y K + + +RF I Q + F + S K + + YNF LFP +G+
Sbjct: 90 SLFDSPAERYQKVRQSVQRFTITQLGLAIFSEENSNKYVVHSYNFFLFPS---TLGVTDA 146
Query: 131 SFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPAL 190
T TS + ++ GFD+N + DGI Y++E QE+ + R+ ++ K S+ L
Sbjct: 147 ELTLSTSSIQFLSHYGFDYNKFLKDGIPYMNELQENILSQRL-----LEGNWKVCSALNL 201
Query: 191 SVADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSE 250
+V +++ V W A + D ++ L S +D
Sbjct: 202 NV-----VKKAIDEVTCWIAAAKEGD----TVILQDLSD------------SQMLD---- 236
Query: 251 RQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAV--------RAVLTSSDEDKDLLKRELQT 302
VQLVL+ +P + G + + R +L SS D ++EL
Sbjct: 237 --VQLVLRQ-------ALPNVWTQPLGDNEVMVKKVSLQHRRLLESSSHDS--CQKELIL 285
Query: 303 FEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLA 362
RGF + +I ++KPLV HN L D +H KF PLP + EF ++
Sbjct: 286 ------TSARGFTNLFQIIVRAKKPLVGHNMLMDLCHLHDKFYNPLPESYEEFKKNIHHL 339
Query: 363 FPQVIDVNYLLKDI 376
FP +ID + K I
Sbjct: 340 FPVLIDTKTVTKSI 353
>gi|351701243|gb|EHB04162.1| Poly(A)-specific ribonuclease PARN, partial [Heterocephalus glaber]
Length = 617
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 94/380 (24%), Positives = 168/380 (44%), Gaps = 36/380 (9%)
Query: 36 NFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFA-AERFQ 92
+F +L ++ I +DF A+ + +G P T FDTPE + F + F
Sbjct: 2 DFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERCFISLFQHSMDFL 61
Query: 93 ILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
+ QF +C FK SK I +NF++FP+ P F CQ+S + +A +GFDFN
Sbjct: 62 LFQFGLCTFKYDYTDSKYIMKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQGFDFN 120
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
GI YL++ +E ++ + + ++++ + AL+ V +
Sbjct: 121 KVFCKGIPYLNQEEERQLREQYD-----EKRSQANGAGALAY------------VSPNTS 163
Query: 211 ACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPL 270
C + + + + + + + Q ++ ++ C+ Q +L+ + L P
Sbjct: 164 KCPVTIPEDQKKFIDQVVEKIEDLLQSEENKTLDLEPCTGFQRKLIYQTLS----WKYPR 219
Query: 271 IIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISASQKP 327
+ + T+ R V+ S +++ +RE Q EQ + GF VI I+ S K
Sbjct: 220 GVHIETLETEKKERYVVISKVNEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKL 279
Query: 328 LVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISA 387
+V HN L D +F PLP ++ EF FP+++D L+ P K + N +
Sbjct: 280 VVGHNMLLDVMHTIHQFYCPLPADLKEFKEMTTCVFPRLLDTK-LMASTQPFKDIIN-NT 337
Query: 388 TIAYLKNRF----FAPIEME 403
++A L+ R F P ++E
Sbjct: 338 SLAELEKRLKETPFNPPKVE 357
>gi|449303050|gb|EMC99058.1| hypothetical protein BAUCODRAFT_59256, partial [Baudoinia
compniacensis UAMH 10762]
Length = 438
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 106/414 (25%), Positives = 167/414 (40%), Gaps = 79/414 (19%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
+ +F L +I IS + F+AV L+ +G + R + + YL+ K AAER+
Sbjct: 3 VHNVSFYPLLLDILTDISEAHFVAVDLELSGVPTKRVRREVGKPSLQERYLETKEAAERY 62
Query: 92 QILQFAI-CPFKLQA-SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
QILQF C + A +K I PYN L P + + F+ Q+ + + K GFD
Sbjct: 63 QILQFGFTCVHQDVANNKYILKPYNVDLSPLIQERGLEVERIFSFQSGAVDFLLKVGFDI 122
Query: 150 NTCIYDGISYLS-----EAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSR 204
+ Y G+ Y+S EA+E K + + MA D K + + +L+ F++RVRS
Sbjct: 123 SRPFYHGVPYISRDESREAREMHAKRQDKSAMA-DIQIKPTETESLA-----FLDRVRSE 176
Query: 205 VKHW---KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLE 261
+ W N D I G + G+ D S + +LV +++
Sbjct: 177 INGWLQSSNTAKDDYININPI-----------GAEGGNEDGAASDGLSRFEKRLVHQLVR 225
Query: 262 DFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVID-- 319
LV L K G Q VR D+ KREL E+ R +GFR V++
Sbjct: 226 AEYPDLVSL---GKAGFVQVVRFNKEREDKVAADRKRELN----ERINRQKGFRWVVEAL 278
Query: 320 ---------------------------------------LISASQKPLVAHNSLNDFTFI 340
L+ + + +V HN D +I
Sbjct: 279 LGSDITRLDLRECARDPVTGEQVFADMDEFSAQFHRAQTLLRGNPRVIVGHNCFLDLVYI 338
Query: 341 HSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL----LKDIGPVKKMTNISATIA 390
+ F+ LP ++ F L +P +ID Y+ DI PV + I+A ++
Sbjct: 339 YRTFIGQLPDSVEAFQRKLHGLWPTIIDTKYMSTHNCGDISPVSSLEQIAAQLS 392
>gi|401422399|ref|XP_003875687.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322491926|emb|CBZ27199.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 596
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 93/382 (24%), Positives = 161/382 (42%), Gaps = 35/382 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
Q+ + NF L + + + DF A+ + TG TF ET Y + AA R
Sbjct: 2 QVRRDNFPAVLPHFQELLRTCDFYAIDEEMTGIGVPEVTETITFAPSET-YHSKRLAASR 60
Query: 91 FQILQFAICPFKL---------------QASKVIAYPYNFHLFPR--DELKMGMPSYSFT 133
+ I+Q +C F+ A + AYP+NF LFP+ D+ +
Sbjct: 61 YSIIQVGVCLFRRIPVSSGATAAGVGTPAAPRYAAYPFNFLLFPQFADDYTAEERAGDVV 120
Query: 134 CQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVA 193
S L + + G DF +YDG+++ ++E+ ++ R+ A +++++ P + A
Sbjct: 121 VSPSALAFLRRHGMDFQRWVYDGMAFCDASREAALRARLAA--AAASQSETTAEPLFTDA 178
Query: 194 DTVFIERVRS-------RVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTID 246
+ ++E R RV+ A T + +A V+ L + + G G + +
Sbjct: 179 ERAWLEEARQTAHALVRRVEAAWAAATSEARQQKAGRVSFLASVAVEG---GKEAVLPVQ 235
Query: 247 VCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFE 306
+ QL L++ + V V G + AVL+ + K+ +R + E
Sbjct: 236 ASRAAREQLELELGRECPQVSVRSRRTGSSGYVVTL-AVLSPEEVSKNAWRRAQK--ERR 292
Query: 307 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 366
Q GFR V + S+KP V HN D+ F+ S LP + ++ R FP +
Sbjct: 293 QLLDTVGFRLVFTELVKSRKPCVGHNCFADWLFLMSAMDGALPEQLPQWKARARELFPCM 352
Query: 367 IDVNYLL--KDIGPVKKMTNIS 386
D YL +D+ P + +IS
Sbjct: 353 WDTRYLASRRDLFPGGRFGSIS 374
>gi|383863398|ref|XP_003707168.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Megachile rotundata]
Length = 533
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 81/349 (23%), Positives = 153/349 (43%), Gaps = 51/349 (14%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+ ++ NFNE +++ ++++ FIA+ + TG + + S FD+ + Y K K
Sbjct: 1 MNEVLDENFNEVYLQLEKLVNNASFIAIDTELTGISADTEVKYSFFDSLDARYKKLKDTI 60
Query: 89 ERFQILQFAICPFK--LQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
E F I+Q+ I F + + A + F+L PR + + + T Q L +++
Sbjct: 61 ENFTIIQYGITVFHHAIDMNLYDADCFTFYLLPR---SLPLKNKQLTWQVDALEFLSRHN 117
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN + GI YL+E E + + + + LS D + ++++
Sbjct: 118 FDFNKLVNHGIPYLNEQDEKSFR------QYLKETNSTYKLNHLSYDDETNFKECMNKIQ 171
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLK--MLEDFS 264
+W L ++ R + E + VQ ++ ++E++
Sbjct: 172 NW--------------LFSNSRDFAVKLE------------VNNPLVQYLIHEIVIENYD 205
Query: 265 DVLVPLIIPA-KGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISA 323
++ IIP K + V A +++ DL + L ++ GF +V L+ +
Sbjct: 206 NI---RIIPGYKTITLKKVSANNFQEEDNGDLEQVVLDSY--------IGFSKVFKLLCS 254
Query: 324 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
S+KP++ HN L D F + +F PLP +EF ++ FPQ+ D +L
Sbjct: 255 SKKPIIGHNVLFDLMFTYQQFYKPLPAQYSEFKRNIHSIFPQIYDTKFL 303
>gi|303314657|ref|XP_003067337.1| CAF1 family ribonuclease containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240107005|gb|EER25192.1| CAF1 family ribonuclease containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320037661|gb|EFW19598.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 583
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 97/449 (21%), Positives = 182/449 (40%), Gaps = 63/449 (14%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFD------TPETAYLKA 84
++TK++F ++L I N I+ S +A+ L+ +G FS + ST T ++ Y +
Sbjct: 2 EVTKSSFGQALPRILNDIAESCCVALDLEFSGIFSKQDRKPSTDGSSGGGRTLQSRYEEV 61
Query: 85 KFAAERFQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAM 142
K AAE++QILQ + + + PYNF+L P + K+ + ++TCQ+S + +
Sbjct: 62 KEAAEKYQILQVGLTFIREDVDRGTYTLRPYNFNLNPIIDPKLDL-ERTWTCQSSAIDLL 120
Query: 143 AKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVR 202
+ GF + DG+ Y+S +E K R+ + + A + + +L F+E R
Sbjct: 121 LRSGFRMDAPFIDGVPYISREEEGMAKARVRDRQSRLAAMDNINFDSLDTESMAFLEEAR 180
Query: 203 SRVKHW-----------------KNACTDSDIKTEAA-------------LVTSLRKIVL 232
+ W K + I LV+ R + +
Sbjct: 181 RLINDWVSKPNRKEEYVNIPSAEKRSANQPGINNYQKRLIHQLVRSEYPDLVSIGRAMFV 240
Query: 233 GGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDED 292
++ + + + RQV+ + ++ I+ A GG + + + +D
Sbjct: 241 QIVKYDKKRELNVQEGRMRQVRERI-----YNQTGFRWIVEAMTGGDLSRLSSDSVADSS 295
Query: 293 KDLLKRELQTFEFEQNKRVRGFREVIDLISASQKP----LVAHNSLNDFTFIHSKFLAPL 348
+D R+ + F ID + A K LV HN D + F+ L
Sbjct: 296 RDPHGRKQKAFGH------------IDYLQAKLKSKRLVLVGHNIFTDLVNFYKCFIGGL 343
Query: 349 PPNMNEFICSLRLAFPQVIDVNYL-LKDIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQ 407
P + EF+ ++ FP ++D YL D G + + L+ R + +
Sbjct: 344 PDKVEEFLGNVHELFPMIVDTKYLATHDCGSALPSSALEELDESLRFRELPTFTTDAQHT 403
Query: 408 ANENEGKIH--GHNVVKICQLFGKLCSIL 434
+E +H G++ + ++F +L S L
Sbjct: 404 KYVDEKPVHEAGYDSLMTARVFLRLASQL 432
>gi|332020023|gb|EGI60474.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Acromyrmex echinatior]
Length = 607
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 86/348 (24%), Positives = 155/348 (44%), Gaps = 49/348 (14%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T NFN+ ++ + +++FIA+ + TG S R S FD+ Y K + +
Sbjct: 3 EVTNQNFNKVYPHLERTLKNANFIAIDGEFTG-IESGDVRNSLFDSIYERYEKNRSHIQP 61
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYS--FTCQTSYLTAMAKEG 146
+ I+QF I F+ +K IA +NF L PR +PS + F Q L + G
Sbjct: 62 YIIIQFGISAFQRVHDENKYIAEAFNFFLLPR-----TIPSKNRHFLWQIESLEFLTMYG 116
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
F+FN Y+GISYL + ++ ++ ++ ++ +S +S + + +++
Sbjct: 117 FNFNELAYNGISYLDQTDKTLLEQQIQENTLFNNVEQS-----ISYKEEDNFKNTVTQIF 171
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 266
W +KT + V S++ P+ T ++++ + FS
Sbjct: 172 EW--------LKTASDEVDSIKV---------KSPTPTFQYFMHKELRKRFSNIWTFS-- 212
Query: 267 LVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQN--KRVRGFREVIDLISAS 324
G V VL E + +L++E + F E + GF +V + +
Sbjct: 213 ---------GNNVITVIKVLP---ESRQILEQE-EGFILENTLLESYVGFSKVFNFLITL 259
Query: 325 QKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
+KP++AHN+ DF FIH +F PLP +F ++ FP + D +L
Sbjct: 260 KKPIIAHNAFLDFMFIHQQFYKPLPQKYIDFKNNIHQLFPTIYDTKFL 307
>gi|149042528|gb|EDL96165.1| rCG49798 [Rattus norvegicus]
Length = 605
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 92/382 (24%), Positives = 168/382 (43%), Gaps = 57/382 (14%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSP--WHRVSTFDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P S FDTPE Y K K +
Sbjct: 2 EIIRSNFKINLPKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK + +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCAFKYDHANSKHVTKSFNFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN GI YL++ +E ++ + + ++++ + AL+
Sbjct: 121 FDFNKVFCSGIPYLNQEEERQLREQFD-----EKRSQANGAGALT--------------- 160
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 266
C + + + + + + + G Q + ++ ++ C+ Q +L+ + L
Sbjct: 161 ----KCPVTIPEDQKKFIDQVIEKIEGFLQREEKRTLELNPCTGFQRKLIYQTL----SW 212
Query: 267 LVPLIIPAKGGGT-QAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQ 325
P I + T + R ++ S ++++ +RE + + EQ K V
Sbjct: 213 KYPKGIHVETLETDKKERHIVISKVDEEERKRREQEKYAKEQGKLV-------------- 258
Query: 326 KPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNI 385
V HN L D +F PLP ++NEF FP+++D L+ P K + N
Sbjct: 259 ---VGHNMLLDVMHTIHQFYCPLPVDLNEFKEMTTCVFPRLLDTK-LMASTQPFKDIIN- 313
Query: 386 SATIAYLKNRF----FAPIEME 403
+ ++A L+ R F P ++E
Sbjct: 314 NTSLAELEKRLKETPFDPPKVE 335
>gi|380022861|ref|XP_003695254.1| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
PARN-like domain-containing protein 1-like [Apis florea]
Length = 633
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 88/371 (23%), Positives = 162/371 (43%), Gaps = 52/371 (14%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+ ++ NF +++N ++++ FIA+ + TG +S + S FD+ Y K
Sbjct: 1 MNEVLNKNFKTLYPKLENAVNNATFIAIDAEFTGLYSEEKLKHSFFDSFNDRYKLLKKNI 60
Query: 89 ERFQILQFAICPFKL----QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
++F I+QF I F+ KV + N +LFP+ + + + Q + L + K
Sbjct: 61 QQFMIIQFGIATFRHVPYENTYKVDCF--NSYLFPKS---IPLKNRHLIWQVAALEFLCK 115
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRM-GNPMA--VDHATKSSSSPALSVADTVFIERV 201
F+FN + +GIS+L E E +K + G +A ++H T + FI+
Sbjct: 116 HNFEFNKFLNEGISFLDETDEKLLKNYIKGGSLAYNLNHLTYEE--------ENEFID-Y 166
Query: 202 RSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLE 261
++++ W ++ K+E L +L + ++ K +
Sbjct: 167 KTKISEWI-----ANNKSEQTLNIQTSNPIL-------------QYLIHKDIRYNYKNIW 208
Query: 262 DFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLI 321
SD +++ V S D + L K + + E E GF +V L+
Sbjct: 209 SISD-------------HKSIGIVEISPDMHELLKKNDEENLEKELLDYYIGFSKVFKLL 255
Query: 322 SASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKK 381
S+S+K ++ HN L D F+H +F PLP + NEF ++ FPQ+ D +L ++ +
Sbjct: 256 SSSKKIIIGHNILLDLMFMHQQFYKPLPNSYNEFKNNIHELFPQIYDTKFLSYEVRKLFS 315
Query: 382 MTNISATIAYL 392
+S I+ L
Sbjct: 316 KEEVSWKISSL 326
>gi|221115125|ref|XP_002160561.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Hydra
magnipapillata]
Length = 502
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 159/355 (44%), Gaps = 37/355 (10%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T++NF+ + IK+ I+++DFI++ + +G S+ + E Y K + +
Sbjct: 2 EVTRSNFDAAFELIKSEINNTDFISIDAEFSG-LSTIKSNSGSCSNLEEKYNMLKDGSNK 60
Query: 91 FQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
++Q+ I FK K A P+NF++ PR K+ F CQ+S + +AK GFD
Sbjct: 61 LLLIQYGISLFKWSEKKKSYKAMPFNFYICPRPYKKVH-NDVIFVCQSSSIDFLAKNGFD 119
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMA-VDHATKSSSSPALSVADTVFIERVRSRVKH 207
FN + G+S++S +E + ++ + + H + R R+ ++
Sbjct: 120 FNKLFHQGVSFMSPWEEEKAREKLKKEINFIAHNE---------------LHR-RTLIQT 163
Query: 208 WKNACTDSDIKTEAALVTSLRKIV----LGGEQFGSRPSM-TIDV--CSERQVQLVLKML 260
N D + K+ + R + E+F S+ T D+ CS Q L+ + L
Sbjct: 164 TTNVSDDVEKKSSVFIPRDQRDFINSVCENIEKFMKDDSLKTYDLPPCSPFQRTLLYEYL 223
Query: 261 EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQN---KRVRGFREV 317
E+ + L + +R V + +E ++ + + E+N + GF +V
Sbjct: 224 EEKYPRGLYLKSVVNENNEKIIRGVKITKNE--EIFNKRIA----EENLLLDEIIGFTKV 277
Query: 318 IDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
I L+S +KPL+ HN L D + F + P N++EF L F + D L
Sbjct: 278 IRLLSDCRKPLIGHNMLMDLFLTTTNFFSLPPENLSEFKVLLISLFSSIFDTKLL 332
>gi|189240485|ref|XP_967921.2| PREDICTED: similar to Parn-A protein [Tribolium castaneum]
gi|270011407|gb|EFA07855.1| hypothetical protein TcasGA2_TC005425 [Tribolium castaneum]
Length = 584
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 106/402 (26%), Positives = 169/402 (42%), Gaps = 67/402 (16%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T +NF E L EI+ I+SS F+A+ + +G + ++ FDTP+ Y K + +
Sbjct: 2 EVTSSNFKEVLPEIEKVINSSTFLAIDCEFSGL--NVVSEINAFDTPKQYYEKVRKNCKE 59
Query: 91 FQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F +LQ+ I F+ AS+ YNF++F R + +P F CQTS + + +GFD
Sbjct: 60 FLVLQYGISAFRFDASEKNFKQQSYNFYIF-RRPINNNIPDQRFLCQTSSINFLMSQGFD 118
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN GISYL+ ++ES + ++ ER + R
Sbjct: 119 FNKLFKFGISYLNISEESGYRDKLE-------------------------ERKKFRSNQN 153
Query: 209 KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLV 268
+ DI + ++ +V + F R S D +L L F V
Sbjct: 154 NTPQQNQDI---VPIPDDVQPVV---DDFMKRLS---DFLESDDDELELPKCNAF----V 200
Query: 269 PLIIPAKGGGTQAVRAVL-TSSDEDKD--LLKRELQTFEFEQNKRVRGFRE--------- 316
+I G + VL T +++KD L+ + +T E +Q R F E
Sbjct: 201 RRLIYQTTGQKFTNKIVLHTKQNKNKDRILVASKCKTKEEQQEIEKRLFEEELTNLDDFI 260
Query: 317 ----VIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
V+ +I S K +V HN DF KFL PL N EF F V+D ++
Sbjct: 261 GFTKVLRIIVESGKLIVGHNMCLDFLHTIDKFLTPLSVNYEEFKDCAHSLFRNVLDTKFM 320
Query: 373 -----LKDIGPVKKMTNISATIAYLKNRF-FAPIEMEIPNQA 408
KD+ + ++ T++ K F P+E+E Q
Sbjct: 321 SSSDEFKDLIQSTVLKSVLETVS--KTPFAIPPVEVEKGGQG 360
>gi|407868227|gb|EKG08788.1| ribonuclease, putative [Trypanosoma cruzi]
Length = 590
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 97/372 (26%), Positives = 158/372 (42%), Gaps = 44/372 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
Q+T+ F L + + S DF A + TG S+ S DTPE +Y + A R
Sbjct: 2 QVTRDTFPAVLPKFVELLKSCDFYAFDEEMTG-ISTAELPESITDTPEESYRAKRTVASR 60
Query: 91 FQILQFAICPFKLQ-------ASKVIAYPYNFHLFPR--DELKMGMPSYSFTCQTSYLTA 141
+ I+Q IC F + + +A P+NF LFP DE S S L
Sbjct: 61 YNIIQVGICLFHRENTAADSTPAHYVARPFNFVLFPHNSDEFNADERSRDVVLSPSSLAF 120
Query: 142 MAKEGFDFNTCIYDGISYLSEAQESTVKVRM-------------GNPMA-----VDHATK 183
+ + +F + +Y G++Y QE ++ R GN + K
Sbjct: 121 LRRHDMNFQSWVYQGMAYCDANQEEALRQRHEERYRELDSIRNEGNQEVEGVSLLTEEEK 180
Query: 184 SSSSPALSVADTVFIERVRSRVKHW--KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRP 241
A+++A T F ER+++ ++ KNA + + A + +L I GG + P
Sbjct: 181 KWYDNAVTLAKT-FSERIQAALEQAKVKNAGHTAGM---AEVSAALDLIQSGGREVFLPP 236
Query: 242 SMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQA-VRAVLTSSDEDKDLLKREL 300
+ S R+ L + + F +L L +G +RAV E+++ L+ +
Sbjct: 237 QRSK---SAREA-LGRHVEQHFHKLL--LTFRRQGAVYMGMLRAVFP---EERNRLREKE 287
Query: 301 QTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLR 360
Q F + + GFR V + + S+KP V HN L D F+ + PLP ++ +F +
Sbjct: 288 QAFREGELMNMLGFRLVFNALVESRKPCVGHNCLADLLFLLASLDGPLPDSLPKFKRRMN 347
Query: 361 LAFPQVIDVNYL 372
FP V D Y+
Sbjct: 348 ELFPIVFDTKYI 359
>gi|453085288|gb|EMF13331.1| CAF1-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 563
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 120/507 (23%), Positives = 195/507 (38%), Gaps = 89/507 (17%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTG-SFSSPWHRVSTFDTPETAYLKAKFAAER 90
I K +F L I IS S F+A+ L+ +G + W T + Y + K AAER
Sbjct: 3 IDKVSFYPQLLNILTDISKSHFVAIDLELSGVPTKASWGEGKP--TLQQRYAEIKDAAER 60
Query: 91 FQILQFAICPFK--LQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
+QILQ + + + +K + PYNF L P + F+ Q+ + GF+
Sbjct: 61 YQILQIGLTCVEQDTRDNKYVLRPYNFDLSPIINERGLDVERIFSFQSGAAEFLLSVGFN 120
Query: 149 FNTCIYDGISYLSEAQESTVK----VRMGNPMAVDHATKSSSSPALSVADTVFIERVRSR 204
N DG+ YLS A+ + + R D K + AL+ F++RVRS
Sbjct: 121 MNRPFTDGVPYLSRAEAKSAREKYAKRQDKSAVADIQIKPTEFEALA-----FLDRVRSE 175
Query: 205 VKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFS 264
+ W+ + + LV S Q + + D E + +++
Sbjct: 176 INTWRAS---KRLDAPEYLVIS---------QTSNHSTQESDFAEELS-RFEKRLVHQLV 222
Query: 265 DVLVP-LIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREV------ 317
P L+ +K G Q VR + E ++ L E + EQ R +GFR +
Sbjct: 223 RAEYPELVTISKRGAIQIVRY----NKERENRLAAERERRMEEQINRQKGFRWIIEALHG 278
Query: 318 -----IDLISASQKP------------------------------LVAHNSLNDFTFIHS 342
IDL ++ P LV HN D +I+
Sbjct: 279 GNVSQIDLRECAKDPVTGEPIYADLDDYKRQFNYTQAIMRGNPRILVGHNCFLDLVYIYR 338
Query: 343 KFLAPLPPNMNEFICSLRLAFPQVIDVNYL----LKDIGPVKKMTNISATIAYLKNRFFA 398
F+ LP + EF L FP ++D Y+ DI P + I+ ++ L+
Sbjct: 339 TFIGALPDTVEEFQQKLHKLFPVIVDTKYMSTHNCGDISPASSLEQIAEQLSDLET---P 395
Query: 399 PIEMEIPNQANENEGKIH--GHNVVKICQLFGKLCSILKITPDAIESSDDFLAS------ 450
P+E + + EN H G++ Q+ +L + L+ IE +D S
Sbjct: 396 PLETDPDHDKYENTEAFHEAGYDAYLTAQVAVRLSAKLEREGAYIEVHNDVTDSTNGQSN 455
Query: 451 AINRYANIFY-SLPGSSQEPTNEEIRG 476
+N A F S+PG+ + ++ G
Sbjct: 456 GLNAQAQGFTPSIPGAKWKRCGDDTLG 482
>gi|440804573|gb|ELR25450.1| RNA binding domain containing protein [Acanthamoeba castellanii
str. Neff]
Length = 631
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 93/358 (25%), Positives = 154/358 (43%), Gaps = 64/358 (17%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
+ K F+ IK I S DF+A+ + TG +S R+++ D+ E Y K + +A +F
Sbjct: 3 VVKETFSAQFETIKQAILSCDFVAIDTELTGLSASKKARINSLDSVEERYGKLRESASKF 62
Query: 92 QILQFAICPF-KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
+Q+ +C F K + +A P+NF++FP K P+ +T +S
Sbjct: 63 MTIQWGLCTFTKTSEGEYVAQPFNFYVFP----KPFHPNLDYTFVSS------------- 105
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPM-AVDHATKSSSSPALSVADTVFIERVRSRVKHWK 209
IY GI +L +E ++R P A A K AL D FI+ + S
Sbjct: 106 -LIYHGIPWLRRDEEE--RIRSSRPAEAAGGAPKDDV--ALGDKDKAFIDAIWS------ 154
Query: 210 NACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLV- 268
A L R+I +G PS + + +L L F +
Sbjct: 155 -----------APLFPRFRRISVGP------PSRIDEWLKTGEKELRLAPCNSFQRRITY 197
Query: 269 ---------PLIIPAKGGGTQAVRAVLTS--SDEDKDLLKRE-LQTFEFEQNKRVRGFRE 316
+ A+ +R ++ S SDE++ ++E Q + E V GFR
Sbjct: 198 QEVAKRYNNAIDASAQSDEGSHLRYIVLSRLSDEERSAKRQEKAQQGDAELEAAV-GFRR 256
Query: 317 VIDLISASQKPLVAHNSLNDFTFIHS-KFLAPLPPNMNEFICSLRLAFPQVIDVNYLL 373
VID+++ ++KP+V HN L D +H+ FL PP ++F L FP ++D +++
Sbjct: 257 VIDVLTEAKKPVVGHNLLLD--LVHTLSFLQLPPPTSDQFKSQLHSLFPTIVDTKFVV 312
>gi|426254329|ref|XP_004020831.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Ovis
aries]
Length = 577
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 150/331 (45%), Gaps = 51/331 (15%)
Query: 91 FQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +GFD
Sbjct: 3 FLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQGFD 61
Query: 149 FNTCIYDGISYLSEAQESTV-------KVRMGNPMAVDHATKSSSSPALSVAD--TVFIE 199
FN +GI YL++ +E + +++ A+ + + ++S +++ D FI+
Sbjct: 62 FNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGAGALSYTSPNTSKCPVTIPDDQKKFID 121
Query: 200 RVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM 259
+V +++ +L E+ ++ ++ C+ Q +L+ +
Sbjct: 122 QVVEKIED-----------------------LLQSEE---NKNLDLEPCTGFQRKLIYQT 155
Query: 260 LEDFSDVLVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFRE 316
L P I + T+ R ++ S ++++ +RE Q EQ + GF
Sbjct: 156 L----SWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSR 211
Query: 317 VIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
VI I+ S K ++ HN L D +F PLP ++NEF FP+++D L+
Sbjct: 212 VIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMAST 270
Query: 377 GPVKKMTNISATIAYLKNRF----FAPIEME 403
P K + N + ++A L+ R F P ++E
Sbjct: 271 QPFKDIIN-NTSLAELEKRLKETPFNPPKVE 300
>gi|343475142|emb|CCD13380.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 586
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 95/390 (24%), Positives = 160/390 (41%), Gaps = 54/390 (13%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
Q+TK N L + + + + DF A + TG S T DTPE +Y + AA R
Sbjct: 2 QVTKDNLTAVLPKFMHLLQTCDFYAFDEEMTGINVSEIQETIT-DTPEESYRAKRAAASR 60
Query: 91 FQILQFAICPFKLQASKV--------IAYPYNFHLFPR--DELKMGMPSYSFTCQTSYLT 140
+ I+Q IC F+ + +A+P+NF LFP D+L S L
Sbjct: 61 YNIIQVGICLFQRKREGTETSTPVSYVAHPFNFVLFPNHMDDLTDVERPQDVVLSPSSLA 120
Query: 141 AMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSP------------ 188
+ + +F + +Y G++Y + AQE+ ++ + H +K P
Sbjct: 121 FLRRHDMNFQSWVYRGMTYCNAAQEAALRQKHEE----KHGSKPKGLPCQQQRHHAQTME 176
Query: 189 -----------ALSVADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQF 237
A A V ER ++ ++ + T E + L++ GG +
Sbjct: 177 LLLEEEREWLNASLAAAKVLRERAQAALERARAQQTRHPRTVELDALMDLKQS--GGREV 234
Query: 238 GSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQ--AVRAVLTSSDEDKDL 295
+P + + R+ L M E + D+ + + GG +RA+ + E L
Sbjct: 235 ILQPQRSKNA---REC-LEWHMDEHYEDIFLTF---RRAGGVYHGTMRALFPT--ERAQL 285
Query: 296 LKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEF 355
L++E + + E ++ GFR V + S+KP V HN L D F+ + F P + F
Sbjct: 286 LEKERASRDRELVDKL-GFRLVFKALVESKKPCVGHNCLADILFLLASFDGEPPGTLPAF 344
Query: 356 ICSLRLAFPQVIDVNYLL--KDIGPVKKMT 383
+ FP V D Y+ +D+ P + T
Sbjct: 345 KHRVGHLFPMVFDTKYIATRQDLFPPARFT 374
>gi|71665029|ref|XP_819489.1| ribonuclease [Trypanosoma cruzi strain CL Brener]
gi|70884792|gb|EAN97638.1| ribonuclease, putative [Trypanosoma cruzi]
Length = 590
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 91/369 (24%), Positives = 151/369 (40%), Gaps = 38/369 (10%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
Q+T+ F L + + S DF A + TG S+ S DTPE +Y + A R
Sbjct: 2 QVTRDTFPAVLPKFVELLKSCDFYAFDEEMTG-ISTAELPESITDTPEESYRAKRTVASR 60
Query: 91 FQILQFAICPFKLQ-------ASKVIAYPYNFHLFPR--DELKMGMPSYSFTCQTSYLTA 141
+ I+Q IC F + + +A P+NF LFP DE S S L
Sbjct: 61 YNIIQVGICLFHRENTAADSTPAHYVARPFNFVLFPHNSDEFNANERSRDVVLSPSSLAF 120
Query: 142 MAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERV 201
+ + +F + +Y G++Y QE ++ R H K ++ +E V
Sbjct: 121 LRRHDMNFQSWVYQGMAYCDANQEEALRQR--------HEEKYRELDSIHNEGNQEVEGV 172
Query: 202 ----RSRVKHWKNACTDSDI---KTEAALVTSLRKIVLGGEQFGS-RPSMTIDVCSE--R 251
K + NA + + +AAL + K+ G+ G S +D+ R
Sbjct: 173 SLLTEEEKKWYDNAVILAKAFSERIQAALEQA--KVKNAGQTAGMVEVSAALDLIQSGGR 230
Query: 252 QVQLVLKMLEDFSDVLV--------PLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTF 303
+V L + + D L L++ + G + + E+++ L+ + Q F
Sbjct: 231 EVFLPPQRSKSARDALERHVEQHFHKLLLTFRRQGAVYIGMLRAVFPEERNRLREKEQAF 290
Query: 304 EFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAF 363
+ + GFR V + + S+KP V HN L D F+ + PLP ++ +F + F
Sbjct: 291 REGELMNMLGFRLVFNALVESRKPCVGHNCLADLLFLLASLDGPLPDSLPKFKRRMNELF 350
Query: 364 PQVIDVNYL 372
P V D Y+
Sbjct: 351 PTVFDTKYI 359
>gi|307174505|gb|EFN64967.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Camponotus floridanus]
Length = 509
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 84/346 (24%), Positives = 151/346 (43%), Gaps = 45/346 (13%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T NFN ++ + ++ FIA+ + TG + + S FD+ Y K + + +
Sbjct: 3 EVTNENFNTIYPHLERTLKNASFIAIDTELTG-LNVDDVKNSLFDSINERYEKQRSSIQP 61
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYS--FTCQTSYLTAMAKEG 146
+ I+QF I F+ ++ A +NF L PR +PS + F Q + L +
Sbjct: 62 YIIIQFGITAFQRIQHENQYTAEAFNFFLLPR-----SIPSKNRQFVWQVAALEFLTAYE 116
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN Y+GISYL+E ++ ++ ++ + + +S +S + ++ ++V
Sbjct: 117 FDFNKFAYNGISYLNEDDQAILQQQLEENVLFHNVERS-----MSYREEDSLKDYINQVF 171
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 266
W N +D + T + + + E P+ + S + V+K+ D
Sbjct: 172 EWLNTASDETNSLKIDTPTPILQYLTHKELRNRFPN--VWTFSGNNMVTVMKIRPD---- 225
Query: 267 LVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQK 326
RA+L E+ +L+ L + GF +V L+ +K
Sbjct: 226 ---------------SRAIL--EQEEGSILENVLL-------ESYIGFSKVFKLLVTLKK 261
Query: 327 PLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
P+VAHN+L D F++ +F PLP F SL FP + D +L
Sbjct: 262 PIVAHNALLDLMFMYQQFYKPLPKKYTNFKDSLHQLFPTIYDTKFL 307
>gi|407394491|gb|EKF26952.1| ribonuclease, putative [Trypanosoma cruzi marinkellei]
Length = 590
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 91/375 (24%), Positives = 147/375 (39%), Gaps = 50/375 (13%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
Q+T+ F + + S DF A + TG ++ T DTPE Y + A R
Sbjct: 2 QVTRDTFPAVFPKFVELLKSCDFYAFDEEMTGISTTELPETIT-DTPEETYRAKRTVASR 60
Query: 91 FQILQFAICPFKLQA-------SKVIAYPYNFHLFPR--DELKMGMPSYSFTCQTSYLTA 141
+ I+Q IC F + + +A P+NF LFP D+ S S L
Sbjct: 61 YNIIQVGICLFHKEKNAANSTPAHYVARPFNFILFPHNSDDFNANERSRDVVLSPSSLAF 120
Query: 142 MAKEGFDFNTCIYDGISYLSEAQESTVKVRM-------------GNPMA-----VDHATK 183
+ + DF + +Y G++Y QE ++ R GN + K
Sbjct: 121 LRRHDMDFQSWVYQGMAYCDANQEEALRKRHEEKYRELDSIHNEGNQEVEGVSLLTEEEK 180
Query: 184 SSSSPALSVADTVFIERV-----RSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFG 238
A+++A F ER+ +++V++ ++ L+ S + V Q G
Sbjct: 181 KWYDNAVTLAQ-AFSERIQAALEKAKVRNAGQTAGMVEVSAALDLIQSGGREVFLPPQRG 239
Query: 239 SRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLK 297
+ ER V+ L L +G + RAV E+++ L+
Sbjct: 240 KSAREAL----ERHVEQHFHKLS--------LTFRRQGAVYMGILRAVFP---EERNRLR 284
Query: 298 RELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFIC 357
+ Q F + + GFR V + S+KP V HN L D F+ + PLP ++ EF
Sbjct: 285 EKEQVFREGELMNMLGFRLVFKALVESRKPCVGHNCLADLLFLLASLDGPLPESLPEFKR 344
Query: 358 SLRLAFPQVIDVNYL 372
+ FP V D Y+
Sbjct: 345 RMNELFPIVFDTKYI 359
>gi|146087155|ref|XP_001465741.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|398015556|ref|XP_003860967.1| hypothetical protein, conserved [Leishmania donovani]
gi|134069841|emb|CAM68168.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|322499191|emb|CBZ34262.1| hypothetical protein, conserved [Leishmania donovani]
Length = 601
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 90/384 (23%), Positives = 160/384 (41%), Gaps = 39/384 (10%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
Q+ + NF + + + DF A+ + TG P + P Y + AA R
Sbjct: 2 QVRRDNFPAVFPHFQELLRTCDFYAIDEEMTG-IGVPEVTETITSAPSETYHSKRLAASR 60
Query: 91 FQILQFAICPFKL---------------QASKVIAYPYNFHLFPR--DELKMGMPSYSFT 133
+ I+Q +C F+ + AYP+NF LFP+ D+ +
Sbjct: 61 YSIIQVGVCLFRRIPVSSGAAAAGVGTPAPPRYAAYPFNFLLFPQFADDYTAEERAGDVV 120
Query: 134 CQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVA 193
S L + + G DF +YDG+++ ++E+ ++ R+ A +++++ P + A
Sbjct: 121 VSPSALAFLRRHGMDFQRWVYDGMAFCDASREAALRARLAA--AAASQSETTAVPLFTDA 178
Query: 194 DTVFIERVRS-------RVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTID 246
+ ++E R RV+ A T + +A V L +V+ G G + +
Sbjct: 179 ERTWLEEARQTAQALVRRVEAAWAAATAEARQKKAGRVPFLASVVVEG---GKEAVLPVQ 235
Query: 247 VCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLT--SSDEDKDLLKRELQTFE 304
+ QL L++ ++ L + ++ G+ LT S +E R Q E
Sbjct: 236 ASRAAREQLELELAREYPQ----LSVRSRRTGSSGYVVTLTVLSPEEVSKNAWRTAQK-E 290
Query: 305 FEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP 364
+ Q GFR V + S+KP V HN D+ F+ S + LP + ++ R FP
Sbjct: 291 WRQLLDTVGFRLVFTELVNSRKPCVGHNCFADWLFLMSAMDSTLPEQLPQWKARARELFP 350
Query: 365 QVIDVNYLL--KDIGPVKKMTNIS 386
+ D YL +D+ P + +IS
Sbjct: 351 CMWDTRYLASRRDLFPSGRFGSIS 374
>gi|156388175|ref|XP_001634577.1| predicted protein [Nematostella vectensis]
gi|156221661|gb|EDO42514.1| predicted protein [Nematostella vectensis]
Length = 640
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 77/143 (53%), Gaps = 4/143 (2%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+ +I ++NF++ L + I + F+AV + +G +S W + + D+P+ Y K K +
Sbjct: 42 VMEILRSNFSQCLPIVSEAIEEASFLAVDAEFSG-LNSHWKQQNALDSPQERYTKLKNTS 100
Query: 89 ERFQILQFAICPF--KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F I+QF +C F +K IA P+NF++FPR ++ P F CQ+S L ++
Sbjct: 101 HDFIIVQFGLCAFIWNENLNKYIAKPFNFYIFPR-QIHRSTPDVRFLCQSSSLDFLSSHN 159
Query: 147 FDFNTCIYDGISYLSEAQESTVK 169
FDF I GISYL E ++
Sbjct: 160 FDFQKWITQGISYLRPYDEQKLR 182
Score = 45.8 bits (107), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 313 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
GF V+ +IS S K +V HN L D I +F PLP ++++F +++ P+V+D +
Sbjct: 316 GFSAVMKMISDSGKLVVGHNMLLDLLHIVDQFFCPLPADLDDFKATVQSLLPRVLDTKVM 375
>gi|224070057|ref|XP_002197536.1| PREDICTED: poly(A)-specific ribonuclease PARN [Taeniopygia guttata]
Length = 638
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 78/143 (54%), Gaps = 5/143 (3%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
++ ++NF ++L+++ I SDF+A+ + +G P T FDTPE Y K K +
Sbjct: 2 EVIRSNFKDNLNKVYEAIEESDFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQAS--KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK + K I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDETEEKYIMKSFNFYIFPKP-FNRNSPDVKFVCQSSSIDFLANQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVK 169
FDFN +GI YL++ +E ++
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLR 143
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 285 VLTSSDED-KDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSK 343
V+T DE+ + +++ Q E E+ GF V+ I+ S K ++ HN L D +
Sbjct: 240 VITKVDEEERKRREQQKQAKEQEELNDAVGFSRVVHAIANSGKLVIGHNMLLDVMHTIHQ 299
Query: 344 FLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRF----FAP 399
F PLP +++EF FP+++D L+ P K+M N + ++A L+ R F+P
Sbjct: 300 FYCPLPDDLSEFKEVTSCVFPRLLDTK-LMASTQPFKEMIN-NTSLAELEKRLKEVPFSP 357
Query: 400 IEME 403
++E
Sbjct: 358 PKVE 361
>gi|145538409|ref|XP_001454910.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124422687|emb|CAK87513.1| unnamed protein product [Paramecium tetraurelia]
Length = 516
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 87/351 (24%), Positives = 151/351 (43%), Gaps = 44/351 (12%)
Query: 36 NFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDT-PETAYLKAKFAAERFQIL 94
NF ++ I I DF+ L+ TG + TF+ P YLK + + ++ I+
Sbjct: 7 NFEQNKQTIMEQIKLCDFLGFDLELTG-IKGEYQ--DTFEELPFERYLKIRKVSMKYNII 63
Query: 95 QFAICPFKLQASKVIAYPYNFHLFPRD-ELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCI 153
QF +C F + +A+PY F+LFP+D + +G+ Q + ++ G D+N I
Sbjct: 64 QFGLCIFIKKQKGYVAFPYTFYLFPQDLDDFVGL-------QVGAVFFNSEHGMDWNRWI 116
Query: 154 YDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACT 213
G+ YL+ AQ ++ D K F E++ VK
Sbjct: 117 NKGVGYLNRAQYQKLQ---------DDYNKDFQQLDQEELKNQF-EKILEDVK------- 159
Query: 214 DSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLV-PLII 272
D KT L+ L K E+ +TI+ + Q +++ LE + ++ ++
Sbjct: 160 PIDKKTIRELIDKLEKFNKSDEK-----QITIETTNGYQRKVIYTYLEAYQKNMIGESLL 214
Query: 273 PAKGGGTQAVRAVLTSSDEDKDLLK-RELQTFEFEQNKRVRGFREVIDLISASQKPLVAH 331
+ T+ A + DE+K LLK QT GF ++ + I S+K +V H
Sbjct: 215 KGEMKITKLTNAEKQAKDEEKYLLKTNRFQT--------KTGFYQIWECILNSKKYIVGH 266
Query: 332 NSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM 382
N D F +S F+ P + EF + +P + D Y+++ P++K+
Sbjct: 267 NCFADIMFCYSHFVQCPPISWEEFKEDVVKHWPPIYDTKYIIQSAQPLEKI 317
>gi|452984862|gb|EME84619.1| hypothetical protein MYCFIDRAFT_152853 [Pseudocercospora fijiensis
CIRAD86]
Length = 574
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 109/413 (26%), Positives = 165/413 (39%), Gaps = 77/413 (18%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSS-PWHRVSTFDTPETAYLKAKFAAER 90
+ KT+F L +I IS + F+A+ L+ +G S W + T + Y K AAER
Sbjct: 3 VNKTSFYPLLPDILTDISKAHFVAIDLELSGIPSHVSWG--AGKRTLDERYQAVKEAAER 60
Query: 91 FQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
+QILQ + + + I PYNF L P + +F+ Q+ + GFD
Sbjct: 61 YQILQIGLTCVEQDVLNDRYILRPYNFDLCPLIYERGLDVERNFSFQSGAGEFLMGVGFD 120
Query: 149 FNTCIYDGISYLS-----EAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRS 203
N DG+ YLS +A+ES K + +A D K + + L+ F++RVR
Sbjct: 121 MNKPFRDGVPYLSRSEARQARESYEKRQKRGNIA-DIEVKPTETETLA-----FMDRVRK 174
Query: 204 RVKHW---KNACT---------DSDI-----------KTEAALVTSLRK------IVLGG 234
V+ W KN T SD+ + E LV L + + G
Sbjct: 175 EVQAWVDSKNVATHDYLNIAPAGSDVLVNGESSAEMPRLEKRLVHQLVRAEFPELVTFGR 234
Query: 235 EQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVL-----VPLIIPAKGGGTQAVRAVLTSS 289
F + ER+ ++ ++ E F L II A G A ++ +
Sbjct: 235 RNF----VQIVKFDKEREDRIAVERKERFEAQLNRQKGFRWIIEAMHGSNIANLDLMECA 290
Query: 290 DE-----DKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKF 344
+ D D LK E F +RG VI V HN D +I+ F
Sbjct: 291 KDAPIFADMDTLKAEF----FRAQNLLRGCPRVI----------VGHNCFLDMVYIYHTF 336
Query: 345 LAPLPPNMNEFICSLRLAFPQVIDVNYL----LKDIGPVKKMTNISATIAYLK 393
+ PLP EF L +P VID Y+ DI P+ + I+ + +L+
Sbjct: 337 IGPLPATAEEFQQKLHKLWPMVIDTKYMSTHNCGDIPPMSSLEQIADQLKHLE 389
>gi|197333695|ref|NP_001127949.1| poly(A)-specific ribonuclease PARN isoform 2 [Homo sapiens]
gi|194375568|dbj|BAG56729.1| unnamed protein product [Homo sapiens]
Length = 578
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/322 (24%), Positives = 146/322 (45%), Gaps = 33/322 (10%)
Query: 91 FQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +GFD
Sbjct: 3 FLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQGFD 61
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN +GI YL++ +E ++ + + ++++ + ALS V
Sbjct: 62 FNKVFRNGIPYLNQEEERQLREQYD-----EKRSQANGAGALSY------------VSPN 104
Query: 209 KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLV 268
+ C + + + + + + + Q ++ ++ C+ Q +L+ + L
Sbjct: 105 TSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTL----SWKY 160
Query: 269 PLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISASQ 325
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I+ S
Sbjct: 161 PKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSG 220
Query: 326 KPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNI 385
K ++ HN L D +F PLP +++EF FP+++D L+ P K + N
Sbjct: 221 KLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQPFKDIIN- 278
Query: 386 SATIAYLKNRF----FAPIEME 403
+ ++A L+ R F P ++E
Sbjct: 279 NTSLAELEKRLKETPFNPPKVE 300
>gi|154337822|ref|XP_001565137.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062184|emb|CAM36572.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 592
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 84/375 (22%), Positives = 152/375 (40%), Gaps = 26/375 (6%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
Q+ + NF + + + DF AV + TG TF ET Y + AA R
Sbjct: 2 QVRRDNFPAVFPHFQKLLHTCDFYAVDEEMTGIGVPEVTETITFAPSET-YHSKRLAASR 60
Query: 91 FQILQFAICPFK---------------LQASKVIAYPYNFHLFPR--DELKMGMPSYSFT 133
+ I+Q +C F+ + +AYP+NF LFP+ D+ +
Sbjct: 61 YSIIQVGVCLFRRIPVSSSAAAAGVGAPAPQRYVAYPFNFLLFPQFADDYTAEERAGDVV 120
Query: 134 CQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVA 193
S L + + G DF +YDG+++ ++E+ ++ R+ ++ ++++ + A
Sbjct: 121 VSPSALAFLRRHGMDFQRWVYDGMAFCDASREAALRARLAATVS---QPETAAESLFTDA 177
Query: 194 DTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQV 253
+ +++E R + + + V S+ + + G + + +
Sbjct: 178 ERLWLEEARQTAQALVGRVEAAWAEARQQKVGSVSFLASVAVEGGKEAVLPVQASRAARE 237
Query: 254 QLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRG 313
QL L++ ++ + V A G AVL+ + K + + E Q G
Sbjct: 238 QLELELAREYPQLSV-RSRRAGPSGYVVTLAVLSPEEVSKHAWRAAQK--ERRQLLDTVG 294
Query: 314 FREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLL 373
FR V + S+KP V HN D+ F+ S LP + ++ R FP + D YL
Sbjct: 295 FRLVFTELVKSRKPCVGHNCFADWLFLMSAMDGALPEQLPQWKARARELFPCMWDTRYLA 354
Query: 374 K--DIGPVKKMTNIS 386
D+ P + NIS
Sbjct: 355 SRHDLFPRSRFDNIS 369
>gi|390350398|ref|XP_785661.3| PREDICTED: poly(A)-specific ribonuclease PARN-like
[Strongylocentrotus purpuratus]
Length = 643
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 97/402 (24%), Positives = 152/402 (37%), Gaps = 103/402 (25%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTG--SFSSPWHRVSTFDTPETAYLKAKFAA 88
++T NFNE+L + + + F+A+ + TG S SSP FDTP Y K
Sbjct: 2 EVTIDNFNEALKLMSSALDHCSFVAIDGEFTGLHSGSSP----GVFDTPAERYQHLKENC 57
Query: 89 ERFQILQFAICPFKLQASK----------------------------------------- 107
F ++Q +C FK + K
Sbjct: 58 CDFLLIQLGVCIFKYEKQKKGYGYVAYPFNLYVFPRPSTRAAPDQRFLCQLGVCIFKYEK 117
Query: 108 ------VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLS 161
+AYP+NF++FPR + P F CQ+S + + GFDFN Y GI YL+
Sbjct: 118 QKKGYGYVAYPFNFYVFPRPSTRAA-PDQRFLCQSSSIDFLVSHGFDFNKVFYKGIGYLT 176
Query: 162 EAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWK-NACTDSDIKTE 220
VK E V+ R ++ NA SD
Sbjct: 177 AVDNMRVK-----------------------------EMVQQRHAQYEGNASLLSDCSPN 207
Query: 221 AALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQ 280
++ ++ V E+ +P + DV + L ED K G
Sbjct: 208 FNSPSTAKRPVEIPEE--HKPFID-DVRYPSGLHLDTHTTED------------KKGRFI 252
Query: 281 AVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFI 340
VR V + +E K L + +LQ E ++ G V+ +IS S K +V HN + D +
Sbjct: 253 VVRRV--TEEEKKKLAQDKLQA-ELDEVDEASGICRVMKMISESGKVVVGHNMMLDVIHM 309
Query: 341 HSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM 382
+F PLP + EF + F +++D ++ + P K++
Sbjct: 310 MHQFTGPLPDTLLEFKSMVGCVFSRLLDTK-VMANTQPFKEL 350
>gi|37681897|gb|AAQ97826.1| poly(A)-specific ribonuclease [Danio rerio]
Length = 660
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 5/143 (3%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
++T+ NF E L E+ N + +DFI++ + TG P T DTPE Y K + +
Sbjct: 2 EVTRQNFKEVLPEVCNAVQEADFISIDGEFTGISDGPSVSALTNGLDTPEERYTKLRKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C F+ S I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MNFLLFQFGVCTFRYDQNQSTYITKAFNFYIFPK-PFSRTSPDIKFICQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVK 169
FDFN GI YL++ +E ++
Sbjct: 121 FDFNKVFRSGIPYLTQEEECQLR 143
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 313 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
GF VI IS S K +V HN L D +F PLP +++F FP+++D L
Sbjct: 267 GFSRVIRAISKSGKLVVGHNMLLDVMHTIHQFCGPLPEELDDFKEVAMTVFPRLLDTK-L 325
Query: 373 LKDIGPVKKM---TNISATIAYLKNRFFAPIEMEIP 405
+ P K++ T+++ L+ + F P E P
Sbjct: 326 MASTQPFKEIIHNTSLAELHKQLRQKPFRPPTTECP 361
>gi|397525567|ref|XP_003832733.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Pan
paniscus]
Length = 578
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 79/322 (24%), Positives = 146/322 (45%), Gaps = 33/322 (10%)
Query: 91 FQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +GFD
Sbjct: 3 FLLFQFGLCTFKYDYTDSKYIMKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQGFD 61
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN +GI YL++ +E ++ + + ++++ + ALS V
Sbjct: 62 FNKVFRNGIPYLNQEEERQLREQYD-----EKRSQANGAGALSY------------VSPN 104
Query: 209 KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLV 268
+ C + + + + + + + Q ++ ++ C+ Q +L+ + L
Sbjct: 105 TSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTL----SWKY 160
Query: 269 PLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISASQ 325
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I+ S
Sbjct: 161 PKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSG 220
Query: 326 KPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNI 385
K ++ HN L D +F PLP +++EF FP+++D L+ P K + N
Sbjct: 221 KLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQPFKDIIN- 278
Query: 386 SATIAYLKNRF----FAPIEME 403
+ ++A L+ R F P ++E
Sbjct: 279 NTSLAELEKRLKETPFNPPKVE 300
>gi|60390548|sp|Q7ZU92.2|PARN_DANRE RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Polyadenylate-specific ribonuclease
Length = 660
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 5/143 (3%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
++T+ NF E L E+ N + +DFI++ + TG P T DTPE Y K + +
Sbjct: 2 EVTRQNFKEVLPEVCNAVQEADFISIDGEFTGISDGPSVSALTNGLDTPEERYTKLRKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C F+ S I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MNFLLFQFGVCTFRYDQNQSTYITKAFNFYIFPK-PFSRTSPDIKFICQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVK 169
FDFN GI YL++ +E ++
Sbjct: 121 FDFNKVFRSGIPYLNQEEECQLR 143
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 313 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
GF VI IS S K +V HN L D +F PLP +++F FP+++D L
Sbjct: 267 GFSRVIRAISKSGKLVVGHNMLLDVMHTIHQFCGPLPEELDDFKEVAMTVFPRLLDTK-L 325
Query: 373 LKDIGPVKKM---TNISATIAYLKNRFFAPIEMEIP 405
+ P K++ T+++ L+ + F P E P
Sbjct: 326 MASTQPFKEIIHNTSLAELHKQLRQKPFRPPTTECP 361
>gi|41055217|ref|NP_957382.1| poly(A)-specific ribonuclease PARN [Danio rerio]
gi|29791562|gb|AAH50496.1| Zgc:56067 [Danio rerio]
Length = 647
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 5/143 (3%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
++T+ NF E L E+ N + +DFI++ + TG P T DTPE Y K + +
Sbjct: 2 EVTRQNFKEVLPEVCNAVQEADFISIDGEFTGISDGPSVSALTNGLDTPEERYTKLRKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C F+ S I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MNFLLFQFGVCTFRYDQNQSTYITKAFNFYIFPK-PFSRTSPDIKFICQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVK 169
FDFN GI YL++ +E ++
Sbjct: 121 FDFNKVFRSGIPYLNQEEECQLR 143
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 313 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
GF VI IS S K +V HN L D +F PLP +++F FP+++D L
Sbjct: 267 GFSRVIRAISKSGKLVVGHNMLLDVMHTIHQFCGPLPEELDDFKEVAMTVFPRLLDTK-L 325
Query: 373 LKDIGPVKKM---TNISATIAYLKNRFFAPIEMEIP 405
+ P K++ T+++ L+ + F P E P
Sbjct: 326 MASTQPFKEIIHNTSLAELHKQLRQKPFRPPTTECP 361
>gi|398404580|ref|XP_003853756.1| hypothetical protein MYCGRDRAFT_91566 [Zymoseptoria tritici IPO323]
gi|339473639|gb|EGP88732.1| hypothetical protein MYCGRDRAFT_91566 [Zymoseptoria tritici IPO323]
Length = 677
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 108/425 (25%), Positives = 168/425 (39%), Gaps = 104/425 (24%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFD------TPETAYLKAK 85
+ KT+F L +I IS + F+ + L+ +G + T D T + YL+ K
Sbjct: 51 VDKTSFYPLLLDILTDISDAAFVTIDLELSG--------IPTKDPAAGKPTLQQRYLETK 102
Query: 86 FAAERFQILQFAICPFKLQAS--KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMA 143
AAER+QILQ I + AS K + PYNF L P + F+ Q+ +
Sbjct: 103 EAAERYQILQIGITCVEQDASSGKYVLKPYNFDLSPVINERGLDVERIFSYQSGAAEFLL 162
Query: 144 KEGFDFNTCIYDGISYLSEAQESTVK---VRMGNPMAV-DHATKSSSSPALSVADTVFIE 199
K GFD G+ YLS A+ T + V+ + AV D A K + +L+ F+
Sbjct: 163 KVGFDMGRPFTHGVPYLSRAESKTAREKFVKRNDRGAVADIAIKPTEVESLA-----FLA 217
Query: 200 RVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM 259
RVRS+V W + +KT L IV P + +V +E++ +
Sbjct: 218 RVRSQVDEW---VASTSMKTPEYL-----NIV---------PFDSDNVSNEQKQE----E 256
Query: 260 LEDFSDVLVPLIIPA---------KGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKR 310
L F LV I+ A + G Q ++ D + KR+L+ E+ R
Sbjct: 257 LSRFEKRLVHQIVRAEYPELTTISRRGMIQVIKFDQEREDRIAEGRKRDLE----ERIAR 312
Query: 311 VRGFREVID-----------------------------------------LISASQKPLV 329
+GFR +ID L+ + K LV
Sbjct: 313 QKGFRWIIDAMHGGNITSLDLRECARDSVTGEYIFVNMDDMKGQFHRAQALLRNNPKVLV 372
Query: 330 AHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL----LKDIGPVKKMTNI 385
HN D +I+ F+ LP + EF L +P ++D Y+ DI P + I
Sbjct: 373 GHNCFLDLVYIYRTFIGTLPDTVEEFQRKLHKLWPVIVDTKYMSTHNCGDISPASSLEQI 432
Query: 386 SATIA 390
+ ++
Sbjct: 433 AEQLS 437
>gi|452843543|gb|EME45478.1| hypothetical protein DOTSEDRAFT_52745 [Dothistroma septosporum
NZE10]
Length = 585
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 101/414 (24%), Positives = 165/414 (39%), Gaps = 78/414 (18%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFS-SPWHRVSTFDTPETAYLKAKFAAER 90
+ K +F L +I + IS + F+A+ L+ +G S W + S T + YL+ K AAER
Sbjct: 3 VDKVSFYPLLLDIISDISEAHFVAIDLELSGVPSRGSWGKDSGKPTIQQRYLEIKEAAER 62
Query: 91 FQILQFAICPF--KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
+QILQ I + K PYNF L P + F+ Q+ + GFD
Sbjct: 63 YQILQIGITCVDQNVHDGKYTLKPYNFDLSPVINERGLDVERIFSFQSGAAEFLLGVGFD 122
Query: 149 FNTCIYDGISYLSEAQESTVKVRMG-----NPMAVDHATKSSSSPALSVADTVFIERVRS 203
G+ YLS A+ + + N MA D K + + +L+ F+ERVR
Sbjct: 123 IGRPFRLGVPYLSRAESKVAREKFAMRQDKNSMA-DIQIKPTETESLA-----FLERVRG 176
Query: 204 RVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQF--GSRPSMTIDVCSERQVQLVLKMLE 261
+ W ++ T A L + +G E G R + + +R V +++
Sbjct: 177 DINTW---VKSRNMDTPAYLNIA----PVGYETIHDGQRQAEELSRFEKRLVHQLVRA-- 227
Query: 262 DFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLI 321
+F + L+ +K G Q VR + +R+L+ E+ R +GFR +I+ +
Sbjct: 228 EFPE----LVTVSKKGFIQIVRFNKEREERIAADRRRDLE----ERIGRQKGFRWIIEAL 279
Query: 322 SASQ-----------------------------------------KPLVAHNSLNDFTFI 340
S K +V HN D +I
Sbjct: 280 HGSNISNLDLRECAKDSVTGEPVFADMDDYKAQFNRAQGMLRGNPKVIVGHNCFLDMVYI 339
Query: 341 HSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLK----DIGPVKKMTNISATIA 390
+ F+ LP N+ EF L +P V+D Y+ DI P+ + I+ ++
Sbjct: 340 YRTFIGELPDNVEEFQRRLHKLWPVVVDTKYMTTHNCGDISPISSLEQIAEQLS 393
>gi|290998593|ref|XP_002681865.1| poly(A)-specific ribonuclease [Naegleria gruberi]
gi|284095490|gb|EFC49121.1| poly(A)-specific ribonuclease [Naegleria gruberi]
Length = 707
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 89/394 (22%), Positives = 153/394 (38%), Gaps = 105/394 (26%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
I +T+ NF+E EI+ + ++ FI+ L+ TG E YLK K +
Sbjct: 94 IIDVTRLNFDEKFQEIQELLPTTAFISFDLEMTG--------------LEVEYLKLKDSV 139
Query: 89 ERFQILQFAICPF-------------KLQASKVI-----------------------AYP 112
+ F+++Q +C + +Q ++I A P
Sbjct: 140 KAFEVIQVGLCLWFVKDVVEEQPATDSMQDDEIIDQAERLRRLIKSSMNKKTTTTVTAKP 199
Query: 113 YNFHLFPRDELKMGMPSYS---FTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVK 169
YNF++F P+ S F+CQ + L + D N I GISY++E +E ++
Sbjct: 200 YNFYVFKS-------PTRSANVFSCQNTCLQFLVNNKMDINKVIGQGISYMNEDEEEAIR 252
Query: 170 ---VRMGNPMAVDHATKSSSSPA-------LSVADTVFIERVRSRVKHWKNACTDSDIKT 219
R+ A + S L F+E +SRV W + D DI
Sbjct: 253 ENVTRITKQKAASATNRRKSDRGDKIQVENLKPEQREFLENCKSRVAEWFDNSEDDDI-- 310
Query: 220 EAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGT 279
+D C+ + +L + ++F +++ I A T
Sbjct: 311 ------------------------NLDPCNTFERKL---LFQEFGEMITLTTIYA-NNRT 342
Query: 280 QAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVI-DLISASQKPLVAHNSLNDFT 338
+R S + +++ ++RE++ E R GF +I +L + HN++ D
Sbjct: 343 AFIRVQRASGESEEEKMQREIR----EAVNRDIGFSRIIRELKKHKHLFFIGHNAMLDMM 398
Query: 339 FIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
I KF+ PLP + +F +R F VID Y+
Sbjct: 399 HIVHKFIQPLPESSEQFKTIVRENFEHVIDTKYI 432
>gi|332240353|ref|XP_003269352.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Nomascus
leucogenys]
Length = 578
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/322 (24%), Positives = 145/322 (45%), Gaps = 33/322 (10%)
Query: 91 FQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +GFD
Sbjct: 3 FLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQGFD 61
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN +GI YL++ +E ++ + + ++++ + ALS V
Sbjct: 62 FNKVFRNGIPYLNQEEERQLREQYD-----EKRSQANGAGALSY------------VSPN 104
Query: 209 KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLV 268
+ C + + + + + + Q ++ ++ C+ Q +L+ + L
Sbjct: 105 TSKCPVPIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTL----SWKY 160
Query: 269 PLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISASQ 325
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I+ S
Sbjct: 161 PKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSG 220
Query: 326 KPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNI 385
K ++ HN L D +F PLP +++EF FP+++D L+ P K + N
Sbjct: 221 KLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQPFKDIIN- 278
Query: 386 SATIAYLKNRF----FAPIEME 403
+ ++A L+ R F P ++E
Sbjct: 279 NTSLAELEKRLKETPFNPPKVE 300
>gi|326928857|ref|XP_003210589.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Meleagris
gallopavo]
Length = 574
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 142/327 (43%), Gaps = 43/327 (13%)
Query: 91 FQILQFAICPFKLQAS--KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F + QF +C FK + K I +NF++FP+ P F CQ+S + +A +GFD
Sbjct: 3 FLLFQFGLCTFKYDHTEEKYIMKSFNFYIFPKP-FNRSSPDVKFVCQSSSIDFLANQGFD 61
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSS--SPALSVADTVFIERVRSRVK 206
FN +GI YL++ +E ++ + + + S S SP + E + +
Sbjct: 62 FNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGSLSYISPNATKCPVAIPEDQKKFID 121
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQF---GSRPSMTIDVCSERQVQLVLKMLEDF 263
KIV E+F S+ ++ C+ Q +L+ + L
Sbjct: 122 ----------------------KIVEQIEEFLKNNENESLELEPCTGFQRKLIYQTL--- 156
Query: 264 SDVLVPLIIPAKG-GGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDL 320
P I + + R ++ S ++++ +RE Q EQ + GF V+
Sbjct: 157 -SWKYPKGIHVETLESDKKERYIVISKVDEEERKRREQQKQAKEQEELNDAVGFSRVVHA 215
Query: 321 ISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVK 380
I+ S K ++ HN L D +F PLP +++EF FP+++D L+ P K
Sbjct: 216 IANSGKLVIGHNMLLDVMHTIHQFYCPLPDDLSEFKEVTSCVFPRLLDTK-LMASTQPFK 274
Query: 381 KMTNISATIAYLKNRF----FAPIEME 403
+ N + ++A L+ R F+P ++E
Sbjct: 275 DIIN-NTSLAELEKRLKEVPFSPPKVE 300
>gi|392869996|gb|EAS28542.2| CAF1 family ribonuclease [Coccidioides immitis RS]
Length = 587
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 97/453 (21%), Positives = 181/453 (39%), Gaps = 67/453 (14%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFD------TPETAYLKA 84
++TK++F+++L I N I+ S +A+ L+ +G FS + ST T ++ Y +
Sbjct: 2 EVTKSSFSQALPRILNDIAESCCVALDLEFSGIFSKQDRKPSTDGSSGGGRTLQSRYEEV 61
Query: 85 KFAAERFQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTS----Y 138
K AAE++QILQ + + + PYNF+L P + K+ + ++TCQ+S
Sbjct: 62 KEAAEKYQILQVGLTFIREDVDRGTYTLRPYNFNLNPIIDPKLDL-ERTWTCQSSDRHQA 120
Query: 139 LTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFI 198
+ + + GF + DG+ Y+S +E K R+ + A + + +L F+
Sbjct: 121 IDLLLRSGFRMDAPFIDGVPYISREEEGMAKARVRDRQTRLAAMDNINFDSLDTESMAFL 180
Query: 199 ERVRSRVKHW-----------------KNACTDSDIKTEAA-------------LVTSLR 228
E R + W K + I LV+ R
Sbjct: 181 EEARRLINDWVSKPNRKEEYVNIPSAEKRSANQPGINNYQKRLIHQLVRSDYPDLVSIGR 240
Query: 229 KIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTS 288
+ + ++ + + + RQV+ + ++ I+ A GG + +
Sbjct: 241 AMFVQIVKYDKKRELNVQEGRMRQVRERI-----YNQTGFRWIVEAITGGDLSRLSSDAF 295
Query: 289 SDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKP----LVAHNSLNDFTFIHSKF 344
+D +D R+ + F ID + A K LV HN D + F
Sbjct: 296 ADSSRDPHGRKQKAFGH------------IDYLQAKLKSKRLVLVGHNIFTDLVNFYKCF 343
Query: 345 LAPLPPNMNEFICSLRLAFPQVIDVNYL-LKDIGPVKKMTNISATIAYLKNRFFAPIEME 403
+ LP + EF+ ++ FP ++D YL D G + + L+ R +
Sbjct: 344 IGGLPDKVEEFLGNVHELFPMIVDTKYLATHDCGSALPSSALEELDESLRFRELPTFTTD 403
Query: 404 IPNQANENEGKIH--GHNVVKICQLFGKLCSIL 434
+ +E +H G++ + ++F +L S L
Sbjct: 404 AQHTKYVDEKPVHEAGYDSLMTARVFLRLVSQL 436
>gi|345485560|ref|XP_001607788.2| PREDICTED: poly(A)-specific ribonuclease PARN-like [Nasonia
vitripennis]
Length = 779
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 7/151 (4%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T++NF + L E+ + + F+A+ + TG S P + FDTP Y K + +
Sbjct: 2 EVTRSNFQDVLKELDEVLDKATFLAIDGEFTGLNSGP--DANAFDTPAQYYTKLRKGSMN 59
Query: 91 FQILQFAICPFKLQASKVIAYP---YNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGF 147
F ++QF + F SK Y YNF++FPR L P F CQ S + +A EGF
Sbjct: 60 FLLVQFGLAVFTYN-SKTNLYSQRSYNFYVFPR-PLDRTSPDCRFMCQASSIVFLANEGF 117
Query: 148 DFNTCIYDGISYLSEAQESTVKVRMGNPMAV 178
DFN +GI YL++ E + +M + V
Sbjct: 118 DFNKLFKEGIPYLTKEDEEKLNKKMVDKQKV 148
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 27/183 (14%)
Query: 313 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
G ++ I+ S K +V HN L D I +F APLP + +EF + FP+++D +
Sbjct: 255 GLSVLLRKIADSGKVIVGHNMLLDLCHIIHQFFAPLPESYHEFKSLVHCLFPRLLDTKII 314
Query: 373 -----LKDIGPVKKMTNISATIAYLKNRFFAPIEME-IPNQANE-NEGKIH--------- 416
KD P +N++ + L + F+ E E IP+++ + N K H
Sbjct: 315 CQSGQFKDSVP----SNLNQLLETLHSAPFSIPETENIPDRSYKLNNDKSHEAGYDAYIT 370
Query: 417 GHNVVKICQLFGKL-----CSILKITPDAIESSDDFLASAINRYANIFYSLPGSSQEPTN 471
G + +C G+L ++L +P + L + + Y +I +L G+ P+
Sbjct: 371 GLCFIALCNRLGELQIPEISTVLPDSPLLNPYLNKLLIARLKDYPHI--NLIGNDPNPSR 428
Query: 472 EEI 474
E +
Sbjct: 429 EHV 431
>gi|348561225|ref|XP_003466413.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Cavia porcellus]
Length = 535
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 128/305 (41%), Gaps = 48/305 (15%)
Query: 51 SDFIAVSLQNTGSFS--SPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPF---KLQA 105
+ F + ++ TG S S + ++S FD P YLK + + ++F I Q + F + ++
Sbjct: 22 ASFAGLDIEFTGLRSNLSRFQQISLFDLPSDWYLKTRQSIQQFSICQIGLSVFSSIEGES 81
Query: 106 SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQE 165
+ IA+ NF LFP G+ F+ Q S + + + GF++N + GI Y++E QE
Sbjct: 82 NMYIAHSCNFFLFPT---TFGILDTEFSFQASSVQFLNQYGFNYNKFLKKGIPYMNEEQE 138
Query: 166 STVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEAALVT 225
+K H+ + + S D ++ V V W + + D T +
Sbjct: 139 KKIK----------HSILTGNWKVRSTLDKDQVKVVIDEVTRWLDLAKEGDQITLPGMA- 187
Query: 226 SLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVPLIIPAKGGGTQAVRA 284
G F +VQLVL+ L + VL + K Q R
Sbjct: 188 -------GFRAF--------------EVQLVLRQALPNIWTVLRDQEVIVKKVSLQH-RW 225
Query: 285 VLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKF 344
L + D+D +E E RGF ++ +QKPLV HN + D +H KF
Sbjct: 226 YLEHASGDRDSCWKE------EILLSARGFSVFFQMLVQAQKPLVGHNMMMDLLHLHEKF 279
Query: 345 LAPLP 349
PLP
Sbjct: 280 FRPLP 284
>gi|346464857|gb|AEO32273.1| hypothetical protein [Amblyomma maculatum]
Length = 498
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 88/350 (25%), Positives = 135/350 (38%), Gaps = 54/350 (15%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+ ++T NF EI+ I+ + F+A+ + TG S P S FD+ E Y K +
Sbjct: 1 MTEVTACNFESLAPEIEAAIAGAAFVAIDTEFTGLVSGPDATPSLFDSIEERYAKLRHTV 60
Query: 89 ERFQILQFAICPFKLQASKVI--AYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
+ + Q IC F + + A + +L PR G F+ Q S + + + G
Sbjct: 61 TNYYVCQLGICTFTQVPGENVYTAKAFTVYLCPR---AFGSVDPEFSVQASSVEFLCRNG 117
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN C Y G+ Y + + + + N ++ P LS ++ V+
Sbjct: 118 FDFNKCFYGGVPYANRSFRRALDAYLLNEQYLE-------KPGLS--------KLYDSVR 162
Query: 207 HWKNACTDSDIKTEAALVTS----LRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLED 262
HW N S ++ +L S L VL + P + DV E
Sbjct: 163 HWLNNNDRSKGSSDNSLTLSPHDDLSIPVLMVDLRTRFPGLEFDV-----------KPEG 211
Query: 263 FSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLIS 322
L P P K V T E E VRGF + +
Sbjct: 212 LRVTLPPNCAPTK---------VATDGRAPT----------EAELVDAVRGFSRCFETLV 252
Query: 323 ASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
+S KP+V HN L D ++++F PLPP E +L FP V D ++
Sbjct: 253 SSGKPIVGHNMLLDLLMLYNQFCEPLPPTFAELKAALSAVFPLVYDTKHM 302
>gi|297292013|ref|XP_002808449.1| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
PARN-like domain-containing protein 1-like [Macaca
mulatta]
Length = 538
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 117/274 (42%), Gaps = 43/274 (15%)
Query: 104 QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEA 163
+A+K IA+ NF LFP G+ F+ Q S + + + GF++N + +GI Y++E
Sbjct: 87 EANKYIAHSCNFFLFP---TTFGILDSEFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEE 143
Query: 164 QESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEAAL 223
QE ++ H + + S D I+ V +V W + + D T +
Sbjct: 144 QEKKIR----------HDILTGNWRVRSSPDKDQIKAVIDKVTRWLDLAKEGDWMTLPGI 193
Query: 224 VTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVPLIIPAKGGGTQAV 282
G + F +VQLVL+ L D VL + K Q
Sbjct: 194 A--------GFQAF--------------EVQLVLRQALPDIWTVLKDEGVVVKKVSKQH- 230
Query: 283 RAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHS 342
R L ++ D++ +E RGF ++ +QKPLV HN + D +H
Sbjct: 231 RWYLQNTSCDRESCWKEKILLS------ARGFSVXFQMLVKAQKPLVGHNMMMDLLHLHE 284
Query: 343 KFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
KF PLP + ++F ++ FP +ID + KDI
Sbjct: 285 KFFRPLPESYDQFKQNIHSLFPVLIDTKNVTKDI 318
>gi|449277437|gb|EMC85602.1| Poly(A)-specific ribonuclease PARN, partial [Columba livia]
Length = 552
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 75/141 (53%), Gaps = 5/141 (3%)
Query: 36 NFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAAERFQI 93
+F ++L+++ I SDF+A+ + +G P T FDTPE Y K K + F +
Sbjct: 2 DFKDNLTKVYEAIEESDFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLL 61
Query: 94 LQFAICPFKLQAS--KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNT 151
QF +C FK + K I +NF++FP+ P F CQ+S + +A +GFDFN
Sbjct: 62 FQFGLCTFKYDHTEEKYIMKSFNFYIFPK-PFNRSSPDVKFVCQSSSIDFLANQGFDFNK 120
Query: 152 CIYDGISYLSEAQESTVKVRM 172
GI YL++ +E ++ ++
Sbjct: 121 VFRTGIPYLNQEEEKQLREQL 141
Score = 46.2 bits (108), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 313 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
GF VI I+ S K ++ HN L D +F PLP +++EF FP+++D L
Sbjct: 264 GFSRVIHAIANSGKLVIGHNMLLDVMHTIHQFYCPLPDDLSEFKELTSCVFPRLLDTK-L 322
Query: 373 LKDIGPVKKMTNISATIAYLKNRF----FAPIEME 403
+ P K++ N + ++A L+ R F+P ++E
Sbjct: 323 MASTQPFKEIIN-NTSLAELEKRLKEVPFSPPKVE 356
>gi|149610539|ref|XP_001516344.1| PREDICTED: poly(A)-specific ribonuclease PARN-like, partial
[Ornithorhynchus anatinus]
Length = 296
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 7/162 (4%)
Query: 36 NFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAAERFQI 93
NF ++LS++ I +DF+A+ + +G P T FDTPE Y K K + F +
Sbjct: 15 NFKKNLSKVYQAIEEADFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLL 74
Query: 94 LQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNT 151
Q+ +C FK SK + +NF++FP+ P F CQ+S + +A +GFDFN
Sbjct: 75 FQYGLCTFKYDHTESKYVMKSFNFYVFPKP-FNRTSPDVKFVCQSSSIVFLANQGFDFNK 133
Query: 152 CIYDGISYLSEAQESTVKVRMGNPMAVDH--ATKSSSSPALS 191
GI YL++ +E ++ ++ + + AT S SP S
Sbjct: 134 VFRCGIPYLNQEEERQLREQLDEKRSQSNGAATLSYVSPNAS 175
>gi|307167442|gb|EFN61018.1| Poly(A)-specific ribonuclease PARN [Camponotus floridanus]
Length = 571
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 86/178 (48%), Gaps = 6/178 (3%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T NF + LSE+ + I ++ F+++ + TG S P FDTP Y K + +
Sbjct: 2 EVTCLNFQDVLSELDSIIQNATFLSIDGEFTGLNSGP--DAGPFDTPAQYYAKLRAGSMD 59
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F ++QF + F Q K YNF++FP+ L P F CQTS + +A + FD
Sbjct: 60 FLLVQFGLSTFTYDSQTDKYFQRSYNFYVFPK-PLNRHAPDCRFMCQTSSIAFLANQDFD 118
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FN GI YLS +E + R+ + + P +S D IE + SR++
Sbjct: 119 FNKLFKYGIPYLSANEEEKLVKRLEEKQKIKEEYNQALIP-ISDNDKPQIEEICSRIE 175
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 309 KRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVID 368
K+ GF ++ I S+K +V HN L D I +F PLP + EF + FP ++D
Sbjct: 250 KQAVGFSSLLKKIVESEKIIVGHNMLLDLCHIVHQFFTPLPNDYIEFKILIHNLFPSLLD 309
Query: 369 V 369
Sbjct: 310 T 310
>gi|322802707|gb|EFZ22924.1| hypothetical protein SINV_00082 [Solenopsis invicta]
Length = 486
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 135/325 (41%), Gaps = 49/325 (15%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T NFN+ ++ + +++FIA+ + TG + S FD+ Y + +
Sbjct: 3 EVTNENFNQVYPHLEQTLKNANFIAIDGEFTG-IDGDDVKNSLFDSVHERYENNRINIQP 61
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYS--FTCQTSYLTAMAKEG 146
I+QF I F+ +K A +NF+L PR +PS + F L + G
Sbjct: 62 HIIIQFGISAFQRIQNENKYTAEVFNFYLLPR-----SIPSKARQFLWSIPALEFLTVYG 116
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN Y GISYL E E ++ ++ +D+ +S +S + + +++
Sbjct: 117 FDFNKLAYQGISYLDEVDEEFLQQQIQKNTLLDNVEQS-----ISYKEEEDFKDTATQIL 171
Query: 207 HW-KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKML-EDFS 264
W K A ++D S I+ C+ + K L + FS
Sbjct: 172 EWLKTASDETD-------------------------SFKIESCTPTMQYFMQKTLRKRFS 206
Query: 265 DVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISAS 324
++ G + + + + L + E E + GF +V L+
Sbjct: 207 NIWT-------FSGNNMITVIKVPPESRRMLEQEEGSILENVLLESYIGFSKVFKLLVTL 259
Query: 325 QKPLVAHNSLNDFTFIHSKFLAPLP 349
+KP++AHN L DF F+H +F PLP
Sbjct: 260 KKPIIAHNPLLDFMFMHQQFYKPLP 284
>gi|281348205|gb|EFB23789.1| hypothetical protein PANDA_014878 [Ailuropoda melanoleuca]
Length = 429
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 113/271 (41%), Gaps = 43/271 (15%)
Query: 107 KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQES 166
+ +A+ NF LFP G+ FT Q S + + + GFD+N + +GI Y++E QE
Sbjct: 1 RYVAHSCNFFLFPT---TFGILDSEFTFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQEK 57
Query: 167 TVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEAALVTS 226
+K H + + S D I+ V V W ++ + D T +
Sbjct: 58 KIK----------HNILTGNWRVRSSLDKDQIKVVIDEVTRWLDSAEEGDWMTLPGIA-- 105
Query: 227 LRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVPLIIPAKGGGTQAVRAV 285
G + F +VQLVL+ L D VL I K Q R
Sbjct: 106 ------GFQAF--------------EVQLVLRQALPDIWTVLRDQGIIVKKVNKQH-RWY 144
Query: 286 LTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFL 345
L ++ D+ +E RGF ++ +QKPLV HN + D +H KF
Sbjct: 145 LENTSCDRASCWKEKILLS------ARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFF 198
Query: 346 APLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
PLP + ++F ++ FP +ID + +DI
Sbjct: 199 RPLPESYDQFKLNIHNLFPVLIDTKNVTRDI 229
>gi|145503682|ref|XP_001437815.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124404972|emb|CAK70418.1| unnamed protein product [Paramecium tetraurelia]
Length = 516
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 83/349 (23%), Positives = 149/349 (42%), Gaps = 40/349 (11%)
Query: 36 NFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDT-PETAYLKAKFAAERFQIL 94
NF + I + I DF+ L+ TG + TF+ P YLKA+ + ++ I+
Sbjct: 7 NFEQHKQTIMDQIKHCDFLGFDLELTG-IKGDYQ--DTFEELPFERYLKARKVSMKYNII 63
Query: 95 QFAICPFKLQASKVIAYPYNFHLFPRD-ELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCI 153
QF + F AYPY F+LFP+D + +G+ Q + ++ G D+N I
Sbjct: 64 QFGLSIFIKSQKGYQAYPYTFYLFPQDLDDFVGL-------QVGAIFFNSEHGMDWNRWI 116
Query: 154 YDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACT 213
G+ Y++ AQ ++ + K T F E++ VK
Sbjct: 117 NKGLGYINRAQYQKLQ---------EDYNKDFQQLDQEELKTQF-EKILDDVKA------ 160
Query: 214 DSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIP 273
+D KT L+ L K ++ TI+ + Q +++ LE + ++ +
Sbjct: 161 -ADKKTIQDLIDKLEKFNKSDDK-----QTTIETTNGYQRKVIYTYLEAYQKNMIGESLL 214
Query: 274 AKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNS 333
G + + + + KD E Q F+ ++ + GF ++ + I S+K LV HN
Sbjct: 215 K---GEMKITKLTNAEKQAKD---DERQKFKADRFQTKTGFYQIWECILNSKKYLVGHNC 268
Query: 334 LNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM 382
D F +S F+ P + EF + +P + D Y+++ P++K+
Sbjct: 269 FADVMFCYSHFVQCPPISWEEFKEDIARNWPPIYDTKYIIQSAQPLEKI 317
>gi|118349638|ref|XP_001008100.1| CAF1 family ribonuclease containing protein [Tetrahymena
thermophila]
gi|89289867|gb|EAR87855.1| CAF1 family ribonuclease containing protein [Tetrahymena
thermophila SB210]
Length = 578
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/370 (23%), Positives = 161/370 (43%), Gaps = 42/370 (11%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
I + NF ++ +I I S DFI+ + +G + + ++ +D+ E Y K K + +
Sbjct: 3 IDRNNFKDNYQKIIQLIQSCDFISFDCEFSGLATERFSKIRKYDSDEDIYQKLKHTVQNY 62
Query: 92 QILQFAICPF---KLQASKVIAYPYNFHLFP-----RDELKMGMPSYSFTCQTSYLTAMA 143
+LQ +C + K+Q K IAYPYN +L P + +K + Q MA
Sbjct: 63 HLLQIGLCIYTFCKVQ-KKYIAYPYNIYLNPVYTTSSESIKKQI------IQLECFNFMA 115
Query: 144 KEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRS 203
G DFN G+SY+ AQ+ K+ + +H ALS A +E++
Sbjct: 116 VNGLDFNKLYSSGLSYIKLAQKE--KILENSKYQQNHGI------ALSKASRDALEQIVK 167
Query: 204 RVKHW---KNACTDSDIKTEAALVTS--LRKIVLGGEQFGSRPSMTIDVCSERQVQLVLK 258
+++ + N D I+ ++ + + L+K + G+ S ++ +D + QL+++
Sbjct: 168 QIQEYDQDNNNTKDVTIECKSQYLCTKILKKQI--GQAIYSCQNVNVDK-GQTNTQLIIR 224
Query: 259 -----MLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRG 313
+ F + I + + + D D D+ + E + + G
Sbjct: 225 KKKPTQNQYFKNKQAQDIDDDENNNNNGTEEIKQNGDGD-DVSNPSHSSSEID----LLG 279
Query: 314 FREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLL 373
F +++ I S++P++ H D + + F+ LP EF+ + FP VID L
Sbjct: 280 FSLIVEAIVNSKRPIIGHYMGYDLFYFYDHFIDVLPNTFVEFVEKVNKYFPYVIDTKVLA 339
Query: 374 KDI-GPVKKM 382
+ + VKK+
Sbjct: 340 RKLQNKVKKL 349
>gi|328776032|ref|XP_392167.3| PREDICTED: poly(A)-specific ribonuclease PARN-like [Apis mellifera]
Length = 897
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 75/144 (52%), Gaps = 5/144 (3%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T +NF E L E+ + ++ F+ + + TG S P V FDTP Y K + +
Sbjct: 2 EVTSSNFQEVLVELDEILKNATFLCIDGEFTGLNSGPDGGV--FDTPAQYYAKLRTGSMD 59
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F ++QF + F + K YNF++FPR +M P F CQTS ++ +A +GFD
Sbjct: 60 FLLIQFGLSVFTFNKEMQKYNQRSYNFYVFPRPLNRMA-PDCRFMCQTSSISFLASQGFD 118
Query: 149 FNTCIYDGISYLSEAQESTVKVRM 172
FN GI YL+ +E + R+
Sbjct: 119 FNKLFKLGIPYLTTNEEEKLMKRL 142
>gi|157869668|ref|XP_001683385.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68126450|emb|CAJ04256.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 598
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 89/382 (23%), Positives = 155/382 (40%), Gaps = 35/382 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
Q+ + NF + + + DF A+ + TG TF ET Y + AA R
Sbjct: 2 QVRRDNFPAVFPHFQELLRTCDFYAIDEEMTGIGVPEVTETITFAPSET-YHSKRLAASR 60
Query: 91 FQILQFAICPFK---------------LQASKVIAYPYNFHLFPR--DELKMGMPSYSFT 133
+ I+Q +C F+ L + AYP+NF LFP+ D+ +
Sbjct: 61 YSIIQVGVCLFRRIPVSSGAAAAGFGTLAPPRYAAYPFNFLLFPQFADDYTAEERAGDVV 120
Query: 134 CQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVA 193
S L + + G DF +YDG+++ ++E+ ++ R+ A +++++ P + A
Sbjct: 121 VSPSALAFLRRHGMDFQRWVYDGMAFCDASREAALRARLAA--AAASQSETTAVPVFTDA 178
Query: 194 DTVFIERVRS-------RVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTID 246
+ ++E R RV+ A T + +A V+ L + + G + +
Sbjct: 179 ERAWLEEARQTAQALVRRVEAAWAAATAEARRKKAGRVSFLASVAVEGGK-----EAVLP 233
Query: 247 VCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFE 306
V + R + L++ + + G V + S +E R Q E
Sbjct: 234 VQASRAAREQLELELALECPQLSVRSRRTGSSGYVVTLTVLSPEEVSKNAWRAAQK-ERR 292
Query: 307 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 366
Q GFR V + S+KP V HN D+ F+ S LP + ++ R FP +
Sbjct: 293 QLLDTVGFRLVFTELVKSRKPCVGHNCFADWLFLMSAMDGALPEQLPQWKARTRELFPCI 352
Query: 367 IDVNYLL--KDIGPVKKMTNIS 386
D YL +D+ P + +IS
Sbjct: 353 WDTRYLASRRDLFPSGRFGSIS 374
>gi|407929029|gb|EKG21868.1| Ribonuclease CAF1 [Macrophomina phaseolina MS6]
Length = 667
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 97/406 (23%), Positives = 160/406 (39%), Gaps = 82/406 (20%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++ KT F L EI IS + F++ L+ +G + R T T E YL K AA+R
Sbjct: 2 EVDKTAFWGRLLEILQAISEAHFVSFDLELSGIPTK--ERSGTKMTLEERYLDIKAAADR 59
Query: 91 FQILQFAICPFK--LQASKVIAYPYNFHLFPRDELKMGMPS-YSFTCQTSYLTAMAKEGF 147
+QILQ + + L PYNF+L P E ++ + +SF Q+ + GF
Sbjct: 60 YQILQIGLTCVQEDLDTESYTVRPYNFNLNPLLEERLDIERIWSF--QSGAAEFLLSHGF 117
Query: 148 DFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTV----FIERVRS 203
+ + G+ YLS A+ K +A +S+ + D V F+ +VR
Sbjct: 118 QMDLPMTTGVPYLSRAEAQKAK-----ELAYARWDRSNIADVQLREDEVQSLEFVRKVRV 172
Query: 204 RVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDF 263
+ W+N T + ++ G+ G +P I + +LV +++
Sbjct: 173 VIDEWRN--------TGKPYLN-----IVCGDPTGDQPR--IPELGNFEKRLVHQLVRAE 217
Query: 264 SDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISA 323
LV + P Q V V + +K +L+ + ++ Q +R GFR +I+ +
Sbjct: 218 YPELVSVPKP------QYVSIVHYDEEREKSILRGKKRSLR-GQIERQTGFRWIIEALCG 270
Query: 324 SQ---------------------------------------KP-LVAHNSLNDFTFIHSK 343
Q +P LV HN D +++
Sbjct: 271 GQLEIDAESFARDVHTGAVKSADMFDLKARFSRAQLALQRRRPALVGHNLFTDIIYLYRT 330
Query: 344 FLAPLPPNMNEFICSLRLAFPQVIDVNYLLK----DIGPVKKMTNI 385
F+ PLPP + EF + FP V+D Y+ DI P + I
Sbjct: 331 FIGPLPPTLEEFRVLIHQHFPLVVDTKYMATHNCGDINPKSSLEEI 376
>gi|312375716|gb|EFR23028.1| hypothetical protein AND_13786 [Anopheles darlingi]
Length = 330
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/342 (21%), Positives = 147/342 (42%), Gaps = 35/342 (10%)
Query: 36 NFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQ 95
+F E L EI+ I + F A+ + TG S + FDTPE Y K A ++ I+Q
Sbjct: 10 DFAEQLPEIRKAIREASFFAIDCEFTGLASDRL--IFPFDTPEEVYQKTVEANTQYIIVQ 67
Query: 96 FAICPFKLQ------------ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMA 143
F +C F+++ ++ YNF+ +P+ ++ F+CQ L +A
Sbjct: 68 FGLCAFRVEPVADGDDESAATEPRLTYKCYNFYCYPKGR------THIFSCQGESLRFLA 121
Query: 144 KEGFDFNTCIYDGISYLSEAQESTVKVRMGN-PMAVDHATKSSSSPALSVADTVFIERVR 202
GFDFN +G+S+ +EA+ ++ + A ++++ A+T + V
Sbjct: 122 DHGFDFNKLFREGLSFATEAEAERLRSDLKERQANRAAALQAAADGTADDAETTDVNMVP 181
Query: 203 SRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLED 262
+H + ++ K EA L + +++++ C+ Q +L+ +M+E
Sbjct: 182 VPAEHQEQ-IDETAAKIEAFLKSDDKELIVNN-------------CNGFQRKLIYQMIEH 227
Query: 263 FSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLIS 322
+ + ++ + E+ ++++ E E + + G V+ +S
Sbjct: 228 KYQQRISTSTITLENNHKCIKVERKRTAEEDQAIEQKRVAQENEDLQTMIGLSVVLQELS 287
Query: 323 ASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP 364
++K ++ HN D + +F PLP + EF + FP
Sbjct: 288 KARKLVIGHNIFLDLLYTIRQFFKPLPTDFKEFKKLTKEIFP 329
>gi|350427143|ref|XP_003494666.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Bombus
impatiens]
Length = 821
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 72/144 (50%), Gaps = 5/144 (3%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T NF E L E+ I S+ F+A+ + TG S P FDTP Y + +
Sbjct: 2 EVTSLNFQEVLVELDEVIKSATFLAIDGEFTGLNSGP--DAGAFDTPAQYYANLRSGSMD 59
Query: 91 FQILQFAIC--PFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F ++QF + F Q K YNF++FPR L P F CQTS ++ +A + FD
Sbjct: 60 FLLIQFGLSVFTFNTQTQKYNQRSYNFYVFPR-PLNRTAPDLRFMCQTSSMSFLASQEFD 118
Query: 149 FNTCIYDGISYLSEAQESTVKVRM 172
FN GI YL+ ++E + R+
Sbjct: 119 FNKLFKLGIPYLTASEEEKLIKRL 142
>gi|380013456|ref|XP_003690772.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Apis florea]
Length = 515
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 92/189 (48%), Gaps = 13/189 (6%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T +NF E L E+ + ++ F+ + + TG S P FDTP Y K + +
Sbjct: 2 EVTSSNFQEVLVELDEILKNATFLCIDGEFTGLNSGP--DAGVFDTPAQYYAKLRTGSMD 59
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F ++QF + F + K YNF++FPR L P F CQTS ++ +A +GFD
Sbjct: 60 FLLIQFGLSVFTFNKEIQKYNQRSYNFYVFPR-PLNRTAPDCRFMCQTSSISFLASQGFD 118
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAV-DHATKSSSSPALSVADTVF--IERVRSRV 205
FN GI YL+ +E + R+ + D AT+ L ++D IE + SR+
Sbjct: 119 FNKLFKLGIPYLTVNEEEKLMKRLEEKQKIRDEATE-----ILPISDVERPQIEEICSRI 173
Query: 206 KHWKNACTD 214
+ + T+
Sbjct: 174 DEFVTSETE 182
>gi|431904573|gb|ELK09955.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Pteropus alecto]
Length = 446
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 116/271 (42%), Gaps = 43/271 (15%)
Query: 107 KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQES 166
+ +A+ NF LFP G+ F+ Q S + + + GFD+N + +GI Y++E QE
Sbjct: 45 RYVAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQEK 101
Query: 167 TVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEAALVTS 226
+K N + + +SS D I+ V + V W + + D T +
Sbjct: 102 KIK---QNILTGNWKVRSS-------LDKDQIKVVINEVTRWLDLAEEGDWMTLPGIA-- 149
Query: 227 LRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVPLIIPAKGGGTQAVRAV 285
G + F +VQLVL+ L D VL + K Q R
Sbjct: 150 ------GFQAF--------------EVQLVLRQALPDIWTVLRDQGVIVKKVSKQH-RWY 188
Query: 286 LTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFL 345
L ++ D++ +E RGF ++ +QKPLV HN + D +H KF
Sbjct: 189 LENTSCDRESCWKEKILLS------ARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFF 242
Query: 346 APLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
PLP + ++F ++ FP +ID + KDI
Sbjct: 243 RPLPESYDQFKLNIHNLFPVLIDTKNVTKDI 273
>gi|72392633|ref|XP_847117.1| ribonuclease [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|62176010|gb|AAX70132.1| ribonuclease, putative [Trypanosoma brucei]
gi|70803147|gb|AAZ13051.1| ribonuclease, putative [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 586
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 89/385 (23%), Positives = 154/385 (40%), Gaps = 46/385 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
Q+T+ N L + + + DF A + TG + P S DTP+ Y + AA R
Sbjct: 2 QVTRDNLPTVLPKFVQLLKTCDFYAFDEEMTG-INVPELPESVTDTPQETYNAKRAAASR 60
Query: 91 FQILQFAICPFKLQA-------SKVIAYPYNFHLFPR---DELKMGMPSYSFTCQTSYLT 140
+ I+Q IC F + + +A P+NF +FP D +G S L
Sbjct: 61 YNIIQVGICLFHKNSENGPSTPASYVARPFNFVIFPNHEDDSPSLGRGD-DVVLNPSSLA 119
Query: 141 AMAKEGFDFNTCIYDGISYLSEAQE----------------STVKVRMGNPMAVDHATKS 184
+ + +F + +Y G+ Y A+E + + R + +++ T+
Sbjct: 120 FLRRHDMNFQSWVYRGMGYCDAAREVVLRQNHEEKYHPNLNDSTEQRRRHAQSMELLTQE 179
Query: 185 SSS---PALSVADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRP 241
S A++ A ++ ER R+ V+ + C + L ++ GG + +P
Sbjct: 180 ERSWFDGAVAAAQSL-CERARAAVERAQAQCAEKGSPGAIELDAAMDLQRSGGREVVIQP 238
Query: 242 SMTIDV--CSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRE 299
+ C +R + + F D+ L G VL ++ + +L++E
Sbjct: 239 QRNKNARECLQRHIA------QHFQDI--SLTFRRSGSTYHGTFKVLFPGEQAR-ILEKE 289
Query: 300 LQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSL 359
E E + GFR V + S KP V HN L D F+ + LP + EF +
Sbjct: 290 CALRERELVDML-GFRLVFKALVESSKPCVGHNCLADVLFLLASLDGELPAALPEFKHRV 348
Query: 360 RLAFPQVIDVNYLL--KDIGPVKKM 382
FP+V D Y+ +D+ P +
Sbjct: 349 VQLFPKVFDTKYIASRQDLFPAGRF 373
>gi|157118661|ref|XP_001659202.1| poly(a)-specific ribonuclease (deadenylation nuclease) [Aedes
aegypti]
gi|108883264|gb|EAT47489.1| AAEL001426-PA [Aedes aegypti]
Length = 582
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 74/144 (51%), Gaps = 10/144 (6%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
+IT NF E L I+ I + F A+ + TG S V FDTPE YLK +
Sbjct: 2 EITTKNFIEQLPTIRQTIREASFFAIDGEFTGLTSD--RNVLPFDTPEEVYLKTIDNSAD 59
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F I+Q +C F++ ++ +V +NF+ +P+ + + F+CQ + +A+ GFD
Sbjct: 60 FVIIQLGLCAFRVDPESGQVSYKCFNFYCYPKGRMHI------FSCQGESMRFLAENGFD 113
Query: 149 FNTCIYDGISYLSEAQESTVKVRM 172
FN +G+SY EA E ++ +
Sbjct: 114 FNKLFREGLSYCGEADEDRLRTEL 137
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%)
Query: 304 EFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAF 363
E E +R+ G V+ +S ++K ++ HN L D FI +F PLP EF +R F
Sbjct: 253 ENEDLERMVGLSLVLQELSRARKLIIGHNMLLDLLFIIRQFFRPLPHCYQEFKKIVRELF 312
Query: 364 PQVIDVNYL 372
P ++D YL
Sbjct: 313 PLILDTKYL 321
>gi|432111779|gb|ELK34824.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Myotis davidii]
Length = 494
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 113/275 (41%), Gaps = 44/275 (16%)
Query: 104 QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEA 163
Q + IA+ NF LFP G+ F+ Q S + + + GFD+N + GI Y++E
Sbjct: 42 QQIRYIAHSCNFFLFP---TTFGILDSEFSFQASSVQFLNQYGFDYNKFLKHGIPYMNEE 98
Query: 164 QESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEAAL 223
QE +K H + + S D ++ V V W + + D T +
Sbjct: 99 QEKQIK----------HNILTGNWRVRSSLDKDQMKAVIDEVTRWLHLAEEGDWMTLPGI 148
Query: 224 VTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVPLIIPAKGGGTQAV 282
G + F +VQLVL+ L D VL + K Q
Sbjct: 149 A--------GFQAF--------------EVQLVLRQALPDIWTVLRDQAVIVKKVSRQH- 185
Query: 283 RAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVID-LISASQKPLVAHNSLNDFTFIH 341
R L ++ D++ +E RGF L+ A ++PLV HN L D +H
Sbjct: 186 RWYLQNTSSDRESCWKEKILLS------ARGFSVFFQMLVKAQKQPLVGHNMLMDLLHLH 239
Query: 342 SKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
KF PLP N ++F ++ FP ++D + KDI
Sbjct: 240 EKFFRPLPENYHQFKSNIHSLFPVLLDTKNVTKDI 274
>gi|148664946|gb|EDK97362.1| poly(A)-specific ribonuclease (deadenylation nuclease), isoform
CRA_a [Mus musculus]
Length = 563
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 147/324 (45%), Gaps = 44/324 (13%)
Query: 91 FQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F + QF +C FK SK + +NF++FP+ P F CQ+S + +A +GFD
Sbjct: 3 FLLFQFGLCAFKYDHTDSKHVTKSFNFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQGFD 61
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTV--FIERVRSRVK 206
FN GI YL++ +E ++ + + + + + +++ + FI++V +++
Sbjct: 62 FNKVFCSGIPYLNQEEERQLREQFDEKRSQANGAGALAKCPVTIPEDQKKFIDQVIEKIE 121
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 266
+ L E+ + S+ +D C+ Q +L+ + L
Sbjct: 122 DF-----------------------LQSEE---KRSLELDPCTGFQRKLIYQTLS----W 151
Query: 267 LVPLIIPAKGGGT-QAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISA 323
P I + T + R ++ S ++++ +RE + + EQ + GF VI I+
Sbjct: 152 KYPKGIHVETLETDKKERHIVISKVDEEERKRREQEKYTKEQEELNDAVGFSRVIHAIAN 211
Query: 324 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMT 383
S K +V HN L D +F PLP ++NEF FP+++D L+ P K +
Sbjct: 212 SGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTK-LMASTQPFKDII 270
Query: 384 NISATIAYLKNRF----FAPIEME 403
N + ++A L+ R F P ++E
Sbjct: 271 N-NTSLAELEKRLKETPFDPPKVE 293
>gi|71894805|ref|NP_001025800.1| poly(A)-specific ribonuclease PARN [Gallus gallus]
gi|53133784|emb|CAG32221.1| hypothetical protein RCJMB04_20e14 [Gallus gallus]
Length = 574
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 143/327 (43%), Gaps = 43/327 (13%)
Query: 91 FQILQFAICPFKLQAS--KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F + QF +C FK + K I +NF++FP+ P F CQ+S + +A +GFD
Sbjct: 3 FLLFQFGLCTFKYDHTEEKYIMKSFNFYIFPKP-FNRSSPDVKFVCQSSSIDFLANQGFD 61
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSS--SPALSVADTVFIERVRSRVK 206
FN +GI YL++ +E ++ + + + S S SP + V E + +
Sbjct: 62 FNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGSLSYISPNATKCPVVIPEDQKKIID 121
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQF---GSRPSMTIDVCSERQVQLVLKMLEDF 263
KIV E+F S+ ++ C+ Q +L+ + L
Sbjct: 122 ----------------------KIVEQIEEFLKNEENESLELEPCTGFQRKLIYQTL--- 156
Query: 264 SDVLVPLIIPAKG-GGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDL 320
P I + + R ++ S ++++ +RE Q EQ + GF V+
Sbjct: 157 -SWKYPKGIHVETLESDKKERYIVISKVDEEERKRREQQKQAKEQEELNDAVGFSRVVHA 215
Query: 321 ISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVK 380
I+ S K ++ HN L D +F PLP +++EF FP+++D L+ P K
Sbjct: 216 IANSGKLVIGHNMLLDVMHTIHQFYCPLPDDLSEFKEVTSCVFPRLLDTK-LMASTQPFK 274
Query: 381 KMTNISATIAYLKNRF----FAPIEME 403
+ N + ++A L+ R F+P ++E
Sbjct: 275 DIIN-NTSLAELEKRLKEVPFSPPKVE 300
>gi|261330312|emb|CBH13296.1| ribonuclease, putative [Trypanosoma brucei gambiense DAL972]
Length = 586
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 89/385 (23%), Positives = 153/385 (39%), Gaps = 46/385 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
Q+T+ N L + + + DF A + TG + P S DTP+ Y + AA R
Sbjct: 2 QVTRDNLPTVLPKFVQLLKTCDFYAFDEEMTG-INVPELPESVTDTPQETYNAKRAAASR 60
Query: 91 FQILQFAICPFKLQA-------SKVIAYPYNFHLFPR---DELKMGMPSYSFTCQTSYLT 140
+ I+Q IC F + + +A P+NF +FP D +G S L
Sbjct: 61 YNIIQVGICLFHKNSENGPSTPASYVARPFNFVIFPNHEDDSPSLGRGD-DVVLNPSSLA 119
Query: 141 AMAKEGFDFNTCIYDGISYLSEAQE----------------STVKVRMGNPMAVDHATKS 184
+ + +F + +Y G+ Y A+E + + R + +++ T+
Sbjct: 120 FLRRHDMNFQSWVYRGMGYCDAAREVVLRQNHEEKYHPNLNDSTEQRRRHAQSMELLTQE 179
Query: 185 SSS---PALSVADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRP 241
S A++ A ++ ER R+ V+ + C + L ++ GG +P
Sbjct: 180 ERSWFDGAVAAAQSL-CERARAAVERAQAQCAEKGRPGAIELDAAMDLQRSGGRDVVIQP 238
Query: 242 SMTIDV--CSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRE 299
+ C +R + + F D+ L G VL ++ + +L++E
Sbjct: 239 QRNKNARECLQRHIA------QHFQDI--SLTFRRSGSTYHGTFKVLFPGEQAR-ILEKE 289
Query: 300 LQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSL 359
E E + GFR V + S KP V HN L D F+ + LP + EF +
Sbjct: 290 SALRERELVDML-GFRLVFKALVESSKPCVGHNCLADVLFLLASLDGELPAALPEFKHRV 348
Query: 360 RLAFPQVIDVNYLL--KDIGPVKKM 382
FP+V D Y+ +D+ P +
Sbjct: 349 VQLFPKVFDTKYIASRQDLFPAGRF 373
>gi|78484343|dbj|BAE47488.1| polyA specific ribonuclease [Arabidopsis thaliana]
Length = 131
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 28 PIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFA 87
P+K +T++NF +L+++++ + ++DF+A+ L+ TG S+PW FD + YLK K +
Sbjct: 37 PLKHVTRSNFETTLNDLRSLVKAADFVAIDLEMTGVTSAPWRDSLEFDRYDVRYLKVKDS 96
Query: 88 AERFQILQFAICPFKL--QASKVIAYP 112
AE+F ++QF +CPF+ + ++YP
Sbjct: 97 AEKFAVVQFGVCPFRWDSRTQSFVSYP 123
>gi|391342764|ref|XP_003745685.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Metaseiulus
occidentalis]
Length = 747
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 82/353 (23%), Positives = 142/353 (40%), Gaps = 18/353 (5%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTG-SFSSPWHRVSTFDTPETAYLKAKFA 87
I +TK+NFN+ +I+ I F A+ + TG P H DT Y K +
Sbjct: 117 IMDVTKSNFNDLKPQIEEAIEKCSFAAIDCEFTGLVLPEPLH---PLDTVAQRYQKLRVG 173
Query: 88 AERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGF 147
+ ++QF + + K F++F + + ++ F Q S L+ + GF
Sbjct: 174 ISEYLVVQFGLSLWTFDEEKQAYNVKTFNIFTYPDQRQ---AFRFRNQASCLSFLVDHGF 230
Query: 148 DFNTCIYDGISYLSEAQ----ESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRS 203
D N C+ +G+ +L A+ + +K R +A + + P + + + S
Sbjct: 231 DLNRCVREGVPFLRPAELDDYQERIKRRHIRELASLFEQEQAGRPVKGFNTSA--DALNS 288
Query: 204 RVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLE-D 262
+ D ++ V L + G + + S+ + C++ V + +E
Sbjct: 289 SLTSDNFLDMDPAVRIYLEGVMPLVSKWMSG-KMPDQDSVLLPACNDFIRMTVYRQIEKK 347
Query: 263 FSDVLVPL-IIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTF--EFEQNKRVRGFREVID 319
F D + + A G Q + S D +R Q E E + G V+
Sbjct: 348 FPDDKFQMEAVRADNGADQRGSKHIKISRSDMSPHQRMSQRHRDEMEALRDSFGVGSVLK 407
Query: 320 LISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
+ SQKP+V HNSL D + +F+APLP + EF R FP + D +
Sbjct: 408 TLVTSQKPVVGHNSLRDILHVIHQFVAPLPEDFGEFQLLCRELFPVLFDTKQM 460
>gi|451850236|gb|EMD63538.1| hypothetical protein COCSADRAFT_143653 [Cochliobolus sativus
ND90Pr]
Length = 620
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 88/379 (23%), Positives = 145/379 (38%), Gaps = 84/379 (22%)
Query: 47 HISSSDFIAVSLQNTGSFS----SPWHRVSTFDTPETAYLKAKFAAERFQILQFAI--CP 100
+I+ +DF++ L+ +G S P F T E Y + K A+R+QILQ I
Sbjct: 18 NIAEADFVSFDLELSGIPSRIQDKPPRGPGRF-TMEERYAETKMGADRYQILQVGITCAR 76
Query: 101 FKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYL 160
F A+K + PYN + P + ++ Q+ T + K GFD +G+ YL
Sbjct: 77 FDYIANKYVLRPYNIDISPLLDERIDF-EREIRFQSGACTFLLKNGFDLGLPFANGVQYL 135
Query: 161 SEAQESTVKVRMGNPMAVDHATKSSSSPAL-----SVADTVFIERVRSRVKHWKNACTDS 215
S + K MA D K + P L V F+ RVR + WK +
Sbjct: 136 SRQEADKAKQ-----MACDRLEKKNPVPDLQLKEGDVESLDFMRRVREAINKWKTTTSSG 190
Query: 216 -DIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLE-DFSDVLVPLIIP 273
DI T L RP I V + + +LV +++ +F D++
Sbjct: 191 LDITTHTGL--------------PERPK--IPVITRFEKRLVHQLVRAEFPDLVT----- 229
Query: 274 AKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFR------------------ 315
G ++ VR + + + ++R ++ E R GFR
Sbjct: 230 --MGRSECVRIIQLDPVREAENMQR-MKNRVDESILRQTGFRWIFEALVKGGNLSRTDLL 286
Query: 316 ----------------------EVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMN 353
+ ++ + Q LV HN D +++ F+ LP +N
Sbjct: 287 YVARTTGMAPTADTDDTRTRFDKAMERLKTKQPVLVGHNMFTDIVYLYRTFVGELPDTLN 346
Query: 354 EFICSLRLAFPQVIDVNYL 372
+F ++ FP++ID YL
Sbjct: 347 DFQDAIHELFPKIIDTKYL 365
>gi|428182900|gb|EKX51759.1| hypothetical protein GUITHDRAFT_102366 [Guillardia theta CCMP2712]
Length = 654
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/349 (24%), Positives = 137/349 (39%), Gaps = 41/349 (11%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
I ++ F + S+I++ + S +F + L+ T + + E Y+K + A
Sbjct: 112 IDRSMFPQVASQIESMLPSCEFYTLDLEMTSL--QTYDEFQWMEDLEDRYMKMREVASSN 169
Query: 92 QILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
I+ +C F + +IA PY F +FP P + T + + + DF
Sbjct: 170 SIISVGLCIFHKDEKNGGLIARPYTFFVFPSSRSSS-SPRVTLDVNTIHEFHIGQCQLDF 228
Query: 150 NTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSV--ADTVFIERVRSRVKH 207
N YDGI Y E V+ + V+ + S P D V + R+ +
Sbjct: 229 NRWFYDGIPYTDALGEVYVRYDVMRQFGVEKSEFRQSRPVAITREGDLVLLNRLMDGLDA 288
Query: 208 WKNACTDSDIKTEAALVTSLRKIVLGGEQFGSR----PSMTIDVCSERQVQLVLKMLEDF 263
W N GEQ G+ PS + Q Q+ +K +
Sbjct: 289 WMNGV---------------------GEQAGNEEYMFPSANSFIRLALQQQVAMKYPK-- 325
Query: 264 SDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISA 323
L++ + + L S D+ KR + R+ GFR + +++S+
Sbjct: 326 ------LVVMTRKEPCNPLVMRLVCSRGDESWRKRTTEKAHQILQSRL-GFRHIFNVLSS 378
Query: 324 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
S+KP+V HN L D F+ S F LP + EF + +FPQV D YL
Sbjct: 379 SKKPMVVHNGLYDLMFLISHFECRLPNTLMEFKSIVHRSFPQVYDTKYL 427
>gi|384245538|gb|EIE19031.1| CAF1-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 600
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 122/300 (40%), Gaps = 50/300 (16%)
Query: 87 AAERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYS--FTCQTSYLTAMAK 144
A+ F + QF + F + K A +NF+LFP L M +P F CQ L +A
Sbjct: 27 GAQNFLVSQFGVSFFCWEGGKYEAQTFNFYLFP---LPM-LPGQDKRFLCQAGSLEFLAG 82
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSR 204
+GFDFN +Y+GI ++ A + ++ +S+ T +E V S
Sbjct: 83 QGFDFNKFVYEGIPFMRVADRDRRLAGL---------SREPCRSEISIHKTEDVEFVSSL 133
Query: 205 VKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLE--D 262
V+ V+S K G + ++ + Q + + LE
Sbjct: 134 VQQ----------------VSSWLK--------GREKELMLEEVNGYQRAIQYQQLEKPQ 169
Query: 263 FSDVLVPLIIPAKGGGTQAVRAV-LTSSD----EDKDLLKRELQTFEFEQNKRVRGFREV 317
F P G Q RA+ LT + E +L K+E EFE+ + GF V
Sbjct: 170 FGAAQPPGFYFESAAGPQGRRAIRLTRTTAAEVEAFNLRKKEA---EFEKVRAAAGFCAV 226
Query: 318 IDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVI-DVNYLLKDI 376
++ + S KP V HN D TF PLPP+ F ++ FP + D YL+K +
Sbjct: 227 LERLRDSGKPAVGHNCAFDLTFTLEHLAQPLPPDWTAFKRLVQSWFPGGLWDTKYLVKQL 286
>gi|340716096|ref|XP_003396538.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Bombus
terrestris]
Length = 809
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T NF E L E+ I + F+A+ + TG S P FDTP Y K + +
Sbjct: 2 EVTSLNFQEVLVELDEVIKNGTFLAIDGEFTGLNSGP--DAGAFDTPAQYYAKLRSGSMD 59
Query: 91 FQILQFAIC--PFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F ++QF + F Q K YNF++FPR L F CQTS ++ +A FD
Sbjct: 60 FLLIQFGLSVFTFNTQTQKYNQRSYNFYVFPR-PLNRTATDLRFMCQTSCMSFLASREFD 118
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATK 183
FN GI YL+ ++E + R+ + T+
Sbjct: 119 FNKLFKLGIPYLTASEEEKLIKRLEEKQKIRDETE 153
>gi|14388565|dbj|BAB60801.1| hypothetical protein [Macaca fascicularis]
Length = 300
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 90/189 (47%), Gaps = 20/189 (10%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F ESL ++ + +DF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 8 FEESLPLLQELVQEADFVGLDIEFTGLRSNLSGP-QQISLFDLPSEWYLKTRQSVQQFTI 66
Query: 94 LQFAICPFKL---QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F +A+K IA+ NF LFP G+ F+ Q S + + + GF++N
Sbjct: 67 CQIGLSVFSAIEGEANKYIAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFNYN 123
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ +GI Y++E QE ++ H + + S D I+ V +V W +
Sbjct: 124 KFLKNGIPYMNEEQEKKIR----------HDILTGNWRVRSSPDKDQIKAVIGKVTRWLD 173
Query: 211 ACTDSDIKT 219
+ D T
Sbjct: 174 LAKEGDWMT 182
>gi|395860984|ref|XP_003802777.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Otolemur
garnettii]
Length = 573
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 134/311 (43%), Gaps = 33/311 (10%)
Query: 91 FQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F + QF +C FK SK I +NF++FP+ + P F CQ+S + +A +GFD
Sbjct: 3 FLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRFS-PDVKFVCQSSSIDFLASQGFD 61
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN ++GI YL++ +E ++ + + A + SP S E + +
Sbjct: 62 FNKVFHNGIPYLNQEEERQLREQYDEKRS--QANGAYVSPNASKCRLTIPEDQKKFIDQ- 118
Query: 209 KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLV 268
+V + ++ E ++ ++ C+ Q +L+ + L
Sbjct: 119 --------------VVEKIEDLLQSEE----NKNLDLEPCTGFQRKLIYQTL----SWKY 156
Query: 269 PLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR---GFREVIDLISASQ 325
P I + T+ + S D++ KR Q ++ + + GF VI I+ S
Sbjct: 157 PKGIHVETLETEKKEQYIAISKVDEEERKRREQEKHAKEQEELNDAVGFSRVIHAIANSG 216
Query: 326 KPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNI 385
K ++ HN L D +F PLP ++ +F FP+++D L+ P K + N
Sbjct: 217 KLVIGHNMLLDVMHTVHQFYYPLPADLTDFKKMTTCVFPRLLDTK-LMASTQPFKDIIN- 274
Query: 386 SATIAYLKNRF 396
+ ++A L+ R
Sbjct: 275 NTSLAELEKRL 285
>gi|344252660|gb|EGW08764.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Cricetulus griseus]
Length = 364
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 87/350 (24%), Positives = 138/350 (39%), Gaps = 94/350 (26%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTG--SFSSPWHRVSTFDTPETAYLKAKFAAE 89
+ F ESLS +++ I +DF+++ +Q TG S SS ++S FD P Y+K + +A
Sbjct: 3 VDADQFAESLSFLRDIIYEADFVSLDIQVTGLHSNSSQPQQISLFDLPSEWYMKTRQSAS 62
Query: 90 RFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
Q L + GFD+
Sbjct: 63 SVQFLN------------------------------------------------QYGFDY 74
Query: 150 NTCIYDGISYLSEAQESTVK--VRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKH 207
N + +GI Y++E QE ++ + GN + SS D I+ V +V
Sbjct: 75 NKFLKNGIPYMNEEQEKKLRESILRGN-------WRVGSS-----LDKDQIKVVIDKVTR 122
Query: 208 WKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDV 266
W + + D ++ L G I +VQ+VL+ L D V
Sbjct: 123 WLDLAEEGD------------RMTLPG----------IAGFQAYEVQMVLRQALPDIWTV 160
Query: 267 LVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQK 326
L + K +Q R L + D +++ + E RGF I+++ +QK
Sbjct: 161 LKDEGVVVKKV-SQPHRWYLENDSCD------QIRCWRQEILLSARGFSGFIEMLVRAQK 213
Query: 327 PLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
PL+ HN D +H KF PLP + +EF ++ FP VID + KDI
Sbjct: 214 PLIGHNMTMDLLHLHEKFFKPLPESYDEFKQNIHSLFPVVIDTKNVSKDI 263
>gi|148670094|gb|EDL02041.1| mCG121400, isoform CRA_b [Mus musculus]
Length = 207
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 92/189 (48%), Gaps = 20/189 (10%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F +SL ++ ++ +DF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 2 FEQSLPLLQELVAGADFVGLDIEFTGLRSNLSRP-QQISLFDLPSEWYLKTRQSVQQFTI 60
Query: 94 LQFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F + +++K +A+ NF LFP G+ F+ Q S + + + GFD+N
Sbjct: 61 CQIGLSMFSSIEGESNKYVAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFDYN 117
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ +GI Y++E QE +K H+ + S D I+ V +V W +
Sbjct: 118 KFLKNGIPYMNEEQEKKIK----------HSILRGNWRVRSSLDKDQIKVVIDKVTQWLD 167
Query: 211 ACTDSDIKT 219
+ D T
Sbjct: 168 LAEEGDQMT 176
>gi|148670093|gb|EDL02040.1| mCG121400, isoform CRA_a [Mus musculus]
Length = 280
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 92/189 (48%), Gaps = 20/189 (10%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F +SL ++ ++ +DF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 8 FEQSLPLLQELVAGADFVGLDIEFTGLRSNLSRP-QQISLFDLPSEWYLKTRQSVQQFTI 66
Query: 94 LQFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F + +++K +A+ NF LFP G+ F+ Q S + + + GFD+N
Sbjct: 67 CQIGLSMFSSIEGESNKYVAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFDYN 123
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ +GI Y++E QE +K H+ + S D I+ V +V W +
Sbjct: 124 KFLKNGIPYMNEEQEKKIK----------HSILRGNWRVRSSLDKDQIKVVIDKVTQWLD 173
Query: 211 ACTDSDIKT 219
+ D T
Sbjct: 174 LAEEGDQMT 182
>gi|149027455|gb|EDL83045.1| rCG44902 [Rattus norvegicus]
Length = 273
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 92/189 (48%), Gaps = 20/189 (10%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F +SL ++ ++ +DF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 8 FEQSLPFLQELVAGADFVGLDIEFTGLRSNLSRP-QQISLFDLPSEWYLKTRQSVQQFTI 66
Query: 94 LQFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F + +++K +A+ NF LFP G+ F+ Q S + + + GFD+N
Sbjct: 67 CQIGLSMFSSVEGESNKYVAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFDYN 123
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ +GI Y++E QE +K H+ + S D I+ V +V W +
Sbjct: 124 KFLKNGIPYMNEEQEKKIK----------HSILRGNWRVRSSLDKDQIKVVIDKVTQWLD 173
Query: 211 ACTDSDIKT 219
+ D T
Sbjct: 174 LAEEGDQMT 182
>gi|115385711|ref|XP_001209402.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114187849|gb|EAU29549.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 582
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 87/378 (23%), Positives = 156/378 (41%), Gaps = 38/378 (10%)
Query: 23 NPHHW--PIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETA 80
+P W P+ TKT F L I +S+ F+++ + +G +P R T +
Sbjct: 38 HPTIWIHPMDITTKT-FASYLPHILRDLSTCAFVSLDFEFSGIAIAPPGRSGGSTTLQER 96
Query: 81 YLKAKFAAERFQILQ--FAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSY 138
YL+ K AAE++ I+Q I + YNF+L P + ++ + S QT
Sbjct: 97 YLETKAAAEKYNIVQVGLTIAQEDPHTATYTLRAYNFYLSPAIDRRLDL-SRDLCFQTGA 155
Query: 139 LTAMAKEGFDFNTCIYDGISYLSEAQESTV----KVRMGNPMAVDHATKSSSSPALSVAD 194
+ + F ++ +G+ YLS +E+ V + R P+ + K + +++
Sbjct: 156 VEFLLDCSFSLDSLYKNGVPYLSREEEAQVWTISQARENRPVRTELDVKDTDYESIA--- 212
Query: 195 TVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQ 254
F++ VR + W A DS + L +F +T++ + V
Sbjct: 213 --FLDAVRQLIDEWL-ASGDSKRPRASYLNIPPPSNPATASRFSKAMPLTLNKFHKSLVH 269
Query: 255 LVLKMLEDFSDVLVPLI----------IPAKGGGTQAVRAVLTS--SDEDKDLLKRELQT 302
+++++E + +I I A+ G V A++ SD L L++
Sbjct: 270 RLIEIIEYDEEREKAVIEQRLKRTKERILAQRGFRWIVEALVGGDLSDLHARLFTDRLES 329
Query: 303 FEFEQNKRVRGFREVIDLISA--------SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNE 354
+ R+ G + +D SA S+ LV HN D +++ FL PLP + E
Sbjct: 330 LSAQYGGRMPG--QTVDEFSAHLLQRLKDSRPVLVGHNLFTDLIYLYRNFLGPLPETVAE 387
Query: 355 FICSLRLAFPQVIDVNYL 372
F + FP V+D Y+
Sbjct: 388 FQRKVHELFPTVVDTKYM 405
>gi|169619537|ref|XP_001803181.1| hypothetical protein SNOG_12967 [Phaeosphaeria nodorum SN15]
gi|111058647|gb|EAT79767.1| hypothetical protein SNOG_12967 [Phaeosphaeria nodorum SN15]
Length = 606
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/371 (22%), Positives = 140/371 (37%), Gaps = 73/371 (19%)
Query: 47 HISSSDFIAVSLQNTGSFS----SPWHRVSTFDTPETAYLKAKFAAERFQILQFAI--CP 100
HIS +DF++ L+ +G S P F T E Y +AK A R+QILQ I
Sbjct: 18 HISEADFVSFDLELSGIPSRLPNKPRSGAGRF-TLEERYAEAKEGANRYQILQVGITCAR 76
Query: 101 FKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYL 160
F A+K + PYN ++ P ++ + Q+ +T + GFD G+ YL
Sbjct: 77 FDYIANKYVLRPYNINISPLISERVDF-EREISLQSGAITFLLGCGFDMAKPFTHGVEYL 135
Query: 161 SEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTE 220
S + +K + + + V F+ RVR + WK ++S
Sbjct: 136 SRQEAEQIKQATADRLENKNPPADMQLKDTDVDSLDFMRRVREAIIKWKAGTSES----- 190
Query: 221 AALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQ 280
A+ T G + I S + +LV +++ LV + G ++
Sbjct: 191 LAITT----------HTGLKEQPAIPTISRFEKRLVHQLVRAEYPELVSM------GRSE 234
Query: 281 AVRAV----LTSSDEDKDLLKRELQTFEFEQNKRVRGFREV------------------- 317
VR + L +D + R +++ EQ R GFR V
Sbjct: 235 CVRIINFDPLREADNN-----RRIKSRVKEQVNRQSGFRWVFEALAQGNLDHAEPLYVAG 289
Query: 318 ----------------IDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRL 361
++ + Q LV HN D +++ F+ LP + F ++
Sbjct: 290 NITADSHNVRDRYDRAVERLRTRQPVLVGHNMFTDIVYLYRTFVGELPDTLQGFRDAIHK 349
Query: 362 AFPQVIDVNYL 372
FP+++D YL
Sbjct: 350 EFPKIVDTKYL 360
>gi|403373024|gb|EJY86423.1| hypothetical protein OXYTRI_13677 [Oxytricha trifallax]
Length = 681
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 85/413 (20%), Positives = 170/413 (41%), Gaps = 59/413 (14%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
IT+ NF + L I ++ +DFIA+ + +G + + DT Y K K + +F
Sbjct: 3 ITRYNFRQQLPGILKNLQEADFIAIDFEFSGLLQNQQNANQASDTIAQRYWKNKESVRKF 62
Query: 92 QILQFAICPFKL---QASKVIAYPYNFHLFP---RDE----------LKMGMP---SYSF 132
+Q IC FK + +PYN ++ P RDE L G+ ++F
Sbjct: 63 MPIQMGICAFKYTHDSKKTLTCFPYNLNIMPSSLRDEKTVLSEGDGSLGTGVQVSNQHNF 122
Query: 133 TCQTSYLTAMAKEGFDFNTCIYDGISYLS--EAQESTVKVRMGNPMAVDHATKSSSSPAL 190
+ + + + +DFN Y+ + YLS + Q+ +++ + S
Sbjct: 123 YVEQTAYQFLQQYKYDFNKLFYESVGYLSYQDYQQYLDDIKLKQYQLALEEQQFDSPECT 182
Query: 191 SVADTVFIER---VRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSM---- 243
+ +++ F+ + + + ++D + E L + K L + P M
Sbjct: 183 TYSNSHFLNLQTCLETVGRLIPKEDLETDPRNELKLDITFAKFQLFHSLLRNIPKMFPKD 242
Query: 244 TID---VCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVL--TSSDEDKDLLKR 298
+D + ++Q + +K+ ++L I P Q + +L +++E +++ +
Sbjct: 243 KLDYELIVDDQQGDMYIKVKVTTDEILRKSIKPF-TSNQQEFKEILEIITNEEKYEIILK 301
Query: 299 ELQTFEFEQNKRVRGFREVID-----------------LISASQKPLVAHNSLNDFTFIH 341
Q F+ E +V ++V D I+A QKPL+ N + D ++
Sbjct: 302 NPQDFQIESLDKV--VQKVFDSIKSVAENSLGASIIPLFIAALQKPLIFQNGMLDLLHLY 359
Query: 342 SKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM------TNISAT 388
KF LP ++ EF ++ + +P + D L+ + ++ N+SAT
Sbjct: 360 DKFYQSLPDDILEFRSNVSVLYPHIYDNKTLMNNFSDIEATMRNNNGMNLSAT 412
>gi|384488069|gb|EIE80249.1| hypothetical protein RO3G_04954 [Rhizopus delemar RA 99-880]
Length = 747
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 13/173 (7%)
Query: 40 SLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAIC 99
+LS ++ I D IA+ + +G P + + + Y++ K A ERF ++QF +C
Sbjct: 209 ALSIVEEAIKECDVIAIDTELSG-LHRPLNNKRLYSL-QDRYIEYKEATERFIVIQFGLC 266
Query: 100 PFKLQAS--KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGI 157
FK AS + IA P+NF++FP + F Q + K+ FDFN +Y GI
Sbjct: 267 TFKWDASSGRYIAKPFNFYIFPTSTTGTVQANRIFMTQAQAFDFLVKQSFDFNKWVYQGI 326
Query: 158 SYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADT--VFIERVRSRVKHW 208
YL++ +E + + MA D P + V + F++ + +++ W
Sbjct: 327 PYLTKQEEKVYREQGEKRMADDM-------PNIPVDEKEFEFMKAAKQKIEQW 372
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%)
Query: 309 KRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVID 368
++ GFR+VID+IS S+K +V HN L D + +F+ PLP + EF FP +ID
Sbjct: 441 RQAVGFRKVIDMISESKKMVVGHNMLLDICHVIGQFVQPLPDTLAEFKVLTHKLFPNLID 500
Query: 369 VNYL 372
Y+
Sbjct: 501 TKYM 504
>gi|307105317|gb|EFN53567.1| hypothetical protein CHLNCDRAFT_136728 [Chlorella variabilis]
Length = 557
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 122/318 (38%), Gaps = 59/318 (18%)
Query: 69 HRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMP 128
R S D E Y + ++ F I QF + F + A YNFHLFPR +
Sbjct: 9 QRGSYLDDMEDRYREMLASSRAFVINQFGLSAFVWEDGAYRARTYNFHLFPRPSEGI--- 65
Query: 129 SYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSP 188
F CQ S + +A GFDFN IYDGI Y+ V +R +VD + S
Sbjct: 66 DKRFVCQASSIDFLASCGFDFNKSIYDGIGYM------PVALRDARLASVDRPPRERSEV 119
Query: 189 ALSVA-DTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIV----LGGEQFG-SRPS 242
+ A D F++ + V W D++ V S ++++ L QFG + P
Sbjct: 120 LVRKAEDVAFVKDTVASVAEW---LQGEDLELVLPAVNSYQRLLQYQELRRPQFGVADPP 176
Query: 243 MTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQT 302
V +E L++ T+A E +
Sbjct: 177 GFYRVAAEEGNGFQLRL-------------------TRAAPG--------------EAEA 203
Query: 303 FEFEQ-NKRVR------GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEF 355
+E EQ KRV GF V++ + S KP V HN D ++ + LP + E+
Sbjct: 204 WEAEQRQKRVEAIHTAAGFAAVMEAMRDSGKPAVGHNLAFDLSYSLHSYAQELPGSWAEY 263
Query: 356 ICSLRLAFP-QVIDVNYL 372
+ FP V D +L
Sbjct: 264 KQLVGRWFPGGVYDTKFL 281
>gi|242005773|ref|XP_002423735.1| poly A-specific ribonuclease PARN, putative [Pediculus humanus
corporis]
gi|212506937|gb|EEB10997.1| poly A-specific ribonuclease PARN, putative [Pediculus humanus
corporis]
Length = 550
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 8/145 (5%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTG-SFSSPWHRVSTFDTPETAYLKAKFAAE 89
++T+ NF+E LS + + + + F+A+ + TG + + +D + YLK + AE
Sbjct: 2 EVTRKNFDEVLSTLPDVFNKAQFLAIDTEFTGLKVEGANNNNNYYDEFDDLYLKNRLKAE 61
Query: 90 RFQILQFAICPF--KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGF 147
F +QF I F ++ K +NF+++P +FTCQ+ + +AK GF
Sbjct: 62 TFMAIQFGIVAFFYDEKSKKYTHQGFNFYIYPSTH-----SDVNFTCQSKSIEFLAKNGF 116
Query: 148 DFNTCIYDGISYLSEAQESTVKVRM 172
DFNT GI YL E++ + + R+
Sbjct: 117 DFNTLFLHGIPYLKESEMAKLLDRL 141
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 313 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
GF VI L+ S+K ++ H L D F +FL+PLP + +EF L FP++ID Y+
Sbjct: 252 GFTRVIKLMIDSKKLIIGHYLLLDILFTIKQFLSPLPNSYSEFKELLHFLFPKIIDTKYM 311
>gi|332023541|gb|EGI63777.1| Poly(A)-specific ribonuclease PARN [Acromyrmex echinatior]
Length = 611
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 76/334 (22%), Positives = 138/334 (41%), Gaps = 36/334 (10%)
Query: 38 NESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFA 97
++ LSE+ + I + F+++ + TG P FDTP Y K + + F ++QF
Sbjct: 49 HDVLSELDSVIKDATFLSIDGEFTGLIVGP--DGGQFDTPAQYYSKIRAGSMNFLLMQFG 106
Query: 98 ICPFKLQAS--KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYD 155
+ F + K YNF++FP+ + + F CQ+S L +A + FDFN
Sbjct: 107 LSVFTYNSDTHKYSQRSYNFYVFPK-PINRQVTDTRFMCQSSSLIFLANKDFDFNKLFKH 165
Query: 156 GISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDS 215
GI YL+ + E + R+ + + + ++ D IE + SR++++ +D+
Sbjct: 166 GIPYLTASDEEKLVKRLEEKRKI---KEENYVIPITDTDKPQIEEICSRIENF--LASDA 220
Query: 216 DIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAK 275
T +R++V + + ++ E Q +L +
Sbjct: 221 KELTIDHCNGFMRRLVHQEARIRWPNKIIVENKMENGWQCLL----------------VR 264
Query: 276 GGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLN 335
GT+ + ++K+ L + K G ++ I S+K +V HN L
Sbjct: 265 RAGTKEEEEERENQKQEKEKL----------EVKEAVGLSNLMKKIVESEKIIVGHNMLL 314
Query: 336 DFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDV 369
D I +F LP + EF L FP ++D
Sbjct: 315 DLCHIVHQFFTSLPKDYLEFKTLLHGLFPNLLDT 348
>gi|345329209|ref|XP_001509823.2| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Ornithorhynchus
anatinus]
Length = 735
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 125/305 (40%), Gaps = 60/305 (19%)
Query: 74 FDTPETAYLKAKFAAERFQILQFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSY 130
FD+P Y K + F Q + F + ++K A+ YNF LFP G+
Sbjct: 47 FDSPAEWYAKTRPDIRLFTACQIGLSVFAGGEGNSNKYEAHSYNFFLFP---TTFGILDS 103
Query: 131 SFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPAL 190
+ Q S + + + GFD+N + +G+ YL+E QE ++ A S +
Sbjct: 104 QISFQASSIEFLNRYGFDYNKFLKNGVPYLNEEQEERIQ----------QALLSGNWKVR 153
Query: 191 SVADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSE 250
D ++ V V W D D T LR + G + F
Sbjct: 154 RTVDRDQLKAVIGEVTRWLALAQDGDRMT-------LRGVT-GFQVF------------- 192
Query: 251 RQVQLVLKM-LEDF------SDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTF 303
+QLVL+ L D +++V + ++ R L +S +D + L +
Sbjct: 193 -NIQLVLRQALPDVWTFPKDREIVVQKV-------SREHRWCLENSPQDPCRKESILLS- 243
Query: 304 EFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAF 363
RGF + +++ ++KPLV HN L D F+H KF PLP + +F ++ F
Sbjct: 244 -------ARGFSVLFRMLAEARKPLVGHNMLMDLLFLHEKFYRPLPESYEQFKQNVHGLF 296
Query: 364 PQVID 368
P ++D
Sbjct: 297 PVLVD 301
>gi|425777876|gb|EKV16031.1| CAF1 family ribonuclease, putative [Penicillium digitatum Pd1]
gi|425780003|gb|EKV18026.1| CAF1 family ribonuclease, putative [Penicillium digitatum PHI26]
Length = 553
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 104/404 (25%), Positives = 166/404 (41%), Gaps = 64/404 (15%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
+T F + L I N IS+S F+AV + +G P S T + Y++AK AAER+
Sbjct: 3 VTAVTFPDCLPSILNDISTSCFVAVDFELSGVVFKPNTPQSRPQTVQERYVEAKAAAERY 62
Query: 92 QILQFAI--CPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
QILQ + C + + PYN +L P + +M + + +T + + + F
Sbjct: 63 QILQVGLTTCHEDKENATYTLKPYNINLSPIAQHEMDV-NRDWTFGSRSMEFLLANHFSI 121
Query: 150 NTCIYDGISYLSEAQESTVKVRMGNPMAVDHAT-KSSSSPALSVADTV--------FIER 200
+ G+ YLS E +A+ AT K S A+ VAD F+E
Sbjct: 122 DHMCTFGVRYLSREDEK---------LAIRRATEKYHSRNAVQVADIKKDDHESLEFLEA 172
Query: 201 VRSRV----------KHWKNACTDSDIK-TEAALVTSLRKI-------VLGGE--QFGSR 240
VR RV + W N S ++ ++ T L + ++ E SR
Sbjct: 173 VRVRVNEWLEQGEKRREWLNIPPPSSMQLIPGSIPTGLSNMQKWLVHHLISDEYPNLTSR 232
Query: 241 PSMTI------DVCSER---QVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDE 291
+ T D C+E+ + +L +KM + I A GG+ +D
Sbjct: 233 GASTFVQIEFRDPCNEQYTFETKLKVKMKRVRKQIGFRWIAEALVGGSLEE----LETDA 288
Query: 292 DKDLLK-RELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPP 350
L+K E TF +Q +V + + ++ LV HN D F + FL PLP
Sbjct: 289 FHPLMKIIEQPTFGVQQLS-----DKVKNRLQENRPVLVGHNMFCDLLFFYRCFLGPLPN 343
Query: 351 NMNEFICSLRLAFPQVIDVNYL-LKDIG---PVKKMTNISATIA 390
+ EF + FP + D Y+ D G P+ + ++ T+A
Sbjct: 344 TLVEFQTVIHDLFPMLADTKYMATHDCGSLNPMSSLEELNTTLA 387
>gi|344249632|gb|EGW05736.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Cricetulus griseus]
Length = 433
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 77/138 (55%), Gaps = 8/138 (5%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG--SFSSPWHRVSTFDTPETAYLKAKFAAERFQIL 94
F E+LS + + I +DF+ + ++ TG S SS ++S FD P Y+K + + ++F I
Sbjct: 8 FAETLSFLHDIIDEADFVGLDIEFTGLRSNSSRPQQISLFDLPSEWYMKTRQSVQQFTIC 67
Query: 95 QFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNT 151
Q + F + +++K +A+ NF LFP G+ F+ Q S + + + GFD+N
Sbjct: 68 QIGLSVFSSIEGESNKYVAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFDYNK 124
Query: 152 CIYDGISYLSEAQESTVK 169
+ +GI Y++E QE ++
Sbjct: 125 FLKNGIPYMNEEQEKKIR 142
>gi|19112846|ref|NP_596054.1| CAF1 family ribonuclease (predicted) [Schizosaccharomyces pombe
972h-]
gi|74676190|sp|O94386.1|YGS9_SCHPO RecName: Full=Uncharacterized protein C29A10.09c
gi|4007797|emb|CAA22437.1| CAF1 family ribonuclease (predicted) [Schizosaccharomyces pombe]
Length = 427
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 76/345 (22%), Positives = 146/345 (42%), Gaps = 29/345 (8%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
+I NF E+L E++ H+ S+ ++++ + +G ++ +T + Y + ++ R
Sbjct: 2 EIHGKNFLETLKELEKHVDSAHYVSIDCEFSGLLRD--FNLNNKNTLQDRYELLRKSSIR 59
Query: 91 FQILQFAICPFKLQAS-KVIAYPYNFHLFP--RDELKMGMPSYSFTCQTSYLTAMAKEGF 147
+ ILQ I LQ + K P N ++ P +DEL + F + S + + ++GF
Sbjct: 60 YTILQIGITFIYLQNNGKSSCIPVNINVSPLVKDELHLKR---DFCSEASSIKFLIQQGF 116
Query: 148 DFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKH 207
DFN + +G+ YLS +E + ++ + +T +S L D + R+++K+
Sbjct: 117 DFNKQLTEGVPYLSRIEERNLIDKVN-----ERSTDDLTSSILDACDEEILVDARNQIKN 171
Query: 208 WKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVL 267
W ++ + TS R I + T+ +R V K +E+
Sbjct: 172 WLSSELSHSTSKYLNITTSNRFIRKAIQSLVKIEFPTLKSYPKRTFLQVRKAIEN----- 226
Query: 268 VPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKP 327
TQ + + S+ +D+ +L K+ G R + D I +K
Sbjct: 227 ---------STTQC--SATSKSELKEDIASDQLILNNLNLIKQNVGLRHLWDYILKKKKS 275
Query: 328 LVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
+V HN + D ++ S F +P + EF +F + D L
Sbjct: 276 VVCHNGMADLVYLFSLFEGKVPETILEFSELCLSSFKSIYDTKLL 320
>gi|189207410|ref|XP_001940039.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976132|gb|EDU42758.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 634
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 88/394 (22%), Positives = 141/394 (35%), Gaps = 84/394 (21%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAA 88
+ +F L + +IS +DF++ L+ +G R S T E Y + K A
Sbjct: 3 VDAASFPHHLLGLMVNISEADFVSFDLELSGIPSRIQDKPARGSGRLTLEERYAETKMGA 62
Query: 89 ERFQILQFAI--CPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
+R+QILQ I F A K + PYN + P + ++ QT T + G
Sbjct: 63 DRYQILQVGITCARFDYIADKYVLRPYNISISPLLDERLDF-EREVRFQTGACTFLLNNG 121
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPAL-----SVADTVFIERV 201
FD G+ YLS + K MA D + P L V F+ R+
Sbjct: 122 FDLGAPFAKGVQYLSREEAERAKQ-----MAWDRLDNKNPIPDLQLKEEDVESLDFMRRI 176
Query: 202 RSRVKHWKNA-CTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQV--QLVLK 258
R +K WK + D+ T L +P+M + E+++ QLV
Sbjct: 177 REAIKTWKTSKALHLDVTTHTGL--------------PDKPAMPVITRFEKRLVHQLVRA 222
Query: 259 MLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREV- 317
+ + G ++ VR V + D ++R ++ E R GFR V
Sbjct: 223 EFPELVTI----------GRSECVRIVDLDPVREADNMRR-IKNRVRESIVRQTGFRWVF 271
Query: 318 ---------------------------------------IDLISASQKPLVAHNSLNDFT 338
++ + Q LV HN D
Sbjct: 272 EALVKGGAVDRADLLYVARTTGMPMTADMYAIRDRYDRAVERLKTKQPVLVGHNMFTDIV 331
Query: 339 FIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
+++ F+ LP + F ++ FP++ID YL
Sbjct: 332 YLYRTFVGQLPDTLQGFQDAIHGLFPKIIDTKYL 365
>gi|170066704|ref|XP_001868194.1| poly(A)-specific ribonuclease [Culex quinquefasciatus]
gi|167862920|gb|EDS26303.1| poly(A)-specific ribonuclease [Culex quinquefasciatus]
Length = 539
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 117/281 (41%), Gaps = 33/281 (11%)
Query: 99 CPFKLQ-ASKVIAYP-YNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDG 156
C F++ S ++Y YNF+ FP+ + + F CQ + +A GFDFN +G
Sbjct: 36 CRFRVDPESGAVSYKCYNFYCFPKGRVHV------FACQGESMRFLADHGFDFNKLFREG 89
Query: 157 ISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSD 216
+SY EA E M +D + A A+ V T+
Sbjct: 90 LSYCGEADEER--------MRMDLKERQEQRAAALEAEEGEEANGNDAVNMVPVPATEEK 141
Query: 217 IKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLE-----DFSDVLVPLI 271
+ E + + L E+ TI C+ Q +LV +M+E S V L
Sbjct: 142 LMAE---IEERIGVFLASEE----KDFTITNCNGFQRKLVYQMIEAKFRKQISTSSVELE 194
Query: 272 IPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAH 331
KG + R + ++D+ L + ++ + V G V+ +S ++K +V H
Sbjct: 195 NKHKGILVERKR----TKEQDRKLEQEKVAQENVDLESAV-GLSLVLQELSKTRKLIVGH 249
Query: 332 NSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
N L D F+ +F PLP N +F ++R FP ++D YL
Sbjct: 250 NMLLDLMFVIRQFFRPLPYNFQDFKKTVRELFPLLLDTKYL 290
>gi|428184515|gb|EKX53370.1| hypothetical protein GUITHDRAFT_101074 [Guillardia theta CCMP2712]
Length = 479
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 132/311 (42%), Gaps = 54/311 (17%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLK-AKFAAE- 89
+T NF E L EIK I DF+A+ + TG +P V T + K A AE
Sbjct: 3 VTTENFEEVLREIKPLIDECDFLAIDCEFTGLDEAPATAVGTLQSVGAGMTKYAGMTAEE 62
Query: 90 ----RFQILQ------FAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTS 137
R++ ++ IC F A K IA PYNF+ FPR E K G+ F CQ
Sbjct: 63 ELQSRYEKIKASTTFLVGICVFTWNAQKRSFIATPYNFYTFPR-EFK-GL-DRRFLCQAK 119
Query: 138 YLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVF 197
++ ++ DFN I GISYL++ +E V+ +S +T F
Sbjct: 120 CMSFLSSNCMDFNKLIKSGISYLNKQEEEFVR------------------RGISSKETEF 161
Query: 198 IERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVL 257
+ +R+ + + T S + S R++++ + S T D C +++
Sbjct: 162 VATIRATIAEFLADETRSILMLPQC--DSYRRMLIHRDL-----SETFDDCFKKE----- 209
Query: 258 KMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREV 317
++ V + K + ++ T+ + + + Q E +Q + GFR V
Sbjct: 210 -------NITVEREVSIKLHKNERTSSLGTTKAKIMESISSLAQKVEEKQIQAAVGFRHV 262
Query: 318 IDLISASQKPL 328
ID ISAS+K L
Sbjct: 263 IDHISASKKGL 273
>gi|212529996|ref|XP_002145155.1| CAF1 family ribonuclease, putative [Talaromyces marneffei ATCC
18224]
gi|212529998|ref|XP_002145156.1| CAF1 family ribonuclease, putative [Talaromyces marneffei ATCC
18224]
gi|210074553|gb|EEA28640.1| CAF1 family ribonuclease, putative [Talaromyces marneffei ATCC
18224]
gi|210074554|gb|EEA28641.1| CAF1 family ribonuclease, putative [Talaromyces marneffei ATCC
18224]
Length = 561
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 92/399 (23%), Positives = 152/399 (38%), Gaps = 61/399 (15%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
+T + I IS F+A+ + +G P ++ S T + Y + K AA +
Sbjct: 9 VTGQTWTYHFPHILQDISECTFVALDFEFSGI---PTYQGSRRQTLQERYAEVKEAAGTY 65
Query: 92 QILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
QILQ + K A PYN HL P + + + +F +S + + K GFD
Sbjct: 66 QILQVGLAIVKEDAIAGTYTVKPYNIHLSPLIDSTLRI-DRTFGFSSSAVQFLLKSGFDL 124
Query: 150 NTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVAD---TVFIERVRSRVK 206
N +G+ YLS +E V + T +++ LS D F+ VR ++
Sbjct: 125 NAPFQEGVHYLSTKEEKKVLEDAHQHNSGRSETGTTAQMVLSKRDRESVAFLADVRKDIE 184
Query: 207 HWKNACTDS----DIKTEAALVTSLRKIVLGGEQFGSR----------PSMTIDVC---- 248
W + ++ + A + R +F R PS+T C
Sbjct: 185 AWLSVGEGRREYLNVPSRDATSRNGRPATTSLNRFQKRLVHQLVETEYPSLTSIGCPDYI 244
Query: 249 ------SERQVQLVLKMLEDFSDVLVPL-----IIPAKGGGT------QAVRAVLTSSDE 291
ER+ ++ + L L+ L +I A GG QA ++ +E
Sbjct: 245 RIVKYDKEREDRIRREKLNRVEKRLLELRGFRWVIEALTGGDLSQLTPQAFHPLVGVVEE 304
Query: 292 DKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPN 351
++D +T + ++K R PLV HN D ++ F LP
Sbjct: 305 EEDAAAYWKRTIDALKSKNGR-------------IPLVGHNLFMDVVYLWQCFYGYLPDQ 351
Query: 352 MNEFICSLRLAFPQVIDVNYLLK----DIGPVKKMTNIS 386
+ EF L FP +ID Y+ D+ PV + +I+
Sbjct: 352 VEEFARLLHEKFPMLIDTKYIFTHDCGDMNPVASLDDIA 390
>gi|302835828|ref|XP_002949475.1| hypothetical protein VOLCADRAFT_120753 [Volvox carteri f.
nagariensis]
gi|300265302|gb|EFJ49494.1| hypothetical protein VOLCADRAFT_120753 [Volvox carteri f.
nagariensis]
Length = 570
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 13/184 (7%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
+ + NF + L +++ I + F+A+ + TG F D E Y + +A+ F
Sbjct: 49 VNRHNFKDVLPIMRSAIHEATFVAIDAEFTGLFPEGVSE-DPLDDYEERYKRLLASADNF 107
Query: 92 QILQFAICPFKLQASKVIAY-------PYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
I QF + FK A+ A +N ++FPR + K G F CQ+S L +A+
Sbjct: 108 AICQFGLSAFKWHAAPGAARGGYWEAKTFNAYIFPRPDDKTGW-DKRFLCQSSSLAYLAE 166
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSR 204
+GFDFN I DGI ++ A + + ++ P A+ +E R+R
Sbjct: 167 QGFDFNKMIRDGIGFIPLAARDAKLRSLREELDKTQRSREVRGP----AEEALVEATRAR 222
Query: 205 VKHW 208
W
Sbjct: 223 ALSW 226
Score = 42.7 bits (99), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 313 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP 364
GF +V+D++ + +PLV HN+ D + S+F LP N + L+ AFP
Sbjct: 380 GFSQVLDVLRDAGRPLVGHNASLDLAYTLSQFNGVLPRNWRAYKALLQRAFP 431
>gi|396479569|ref|XP_003840786.1| similar to CAF1 family ribonuclease [Leptosphaeria maculans JN3]
gi|312217359|emb|CBX97307.1| similar to CAF1 family ribonuclease [Leptosphaeria maculans JN3]
Length = 630
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 80/374 (21%), Positives = 150/374 (40%), Gaps = 44/374 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFS----SPWHRVSTFDTPETAYLKAKF 86
++ +F L+ + HIS +DF+A L+ +G S P + T E Y + K
Sbjct: 2 EVDAESFPHHLTGLFIHISEADFVAFDLELSGIPSRLPDKPARGRGRY-TLEERYAETKH 60
Query: 87 AAERFQILQFAI--CPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
A+R+QILQ + F A+K + PYN ++ P + ++ Q+ + +
Sbjct: 61 GADRYQILQVGLTCARFDYIANKYVLRPYNINICPLLDERLDF-EREIRFQSGACSFLLS 119
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSV----ADTV-FIE 199
GF+ G+ YLS + + + MA D K + + + D++ F+
Sbjct: 120 HGFNLGAPFASGVQYLSRQEAARARQ-----MAWDRIEKKNPVEDMQLKEEHVDSLDFVR 174
Query: 200 RVRSRVKHWKNACTDS-DIKTEAAL--------VTSLRKIV---LGGEQFGSRPSM---- 243
RVR + WK +D ++ T L ++ K + L +F + S+
Sbjct: 175 RVREAITQWKTTNSDCLEVTTHTGLPKAPHVQAISRFEKRLVHQLVRAEFPDQVSIGRHD 234
Query: 244 ---TIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDK--DLLKR 298
ID ER+ V +M + ++ + G A++ D D+ L
Sbjct: 235 CIRIIDHDVEREADNVRRMKSRVKEQII-----RQTGFRWIFEALVKGGDIDRAEPLYLS 289
Query: 299 ELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICS 358
+ + + + ++ + Q LV HN D +++ F+ LP + F
Sbjct: 290 RTSSLTADVSGLKDRYDRAVERLKTRQPVLVGHNMFTDIVYLYRTFVGELPDTLQGFREV 349
Query: 359 LRLAFPQVIDVNYL 372
+ FP+++D YL
Sbjct: 350 IHELFPKIVDTKYL 363
>gi|325185583|emb|CCA20066.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 656
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 93/384 (24%), Positives = 158/384 (41%), Gaps = 59/384 (15%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+++IT+ +F L I+ I++S FIA+ + G S P R DT E Y A
Sbjct: 7 VQEITQKDFLSQLLVIQKAITNSAFIAIDTE-FGGISFPGERAKWMDTIEERYQLHAKTA 65
Query: 89 ERFQILQFAICPF---------KLQASKVIAYPYNFHLFPRDEL--------------KM 125
+ ++QF + F + +K F +F R E K+
Sbjct: 66 RTYPLMQFGLSCFIPCYTENETPKRFTKYQVLTMQFPIFARYEKASHSVSTTKRSKNGKV 125
Query: 126 GMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSS 185
P +F Q + + + GFDFN I +GISY+S + + VK+ +G VD T S
Sbjct: 126 VSPDRNFMLQAMCIQYIHEHGFDFNDWIENGISYISSS--AMVKL-LGENDVVD--TPQS 180
Query: 186 SSPALSVADTVFIERVRSR-VKHWKNACTDSDIKTEAAL--------VTSLRKIVL---- 232
+ AL F++++ + +K + T + + V+ ++ +
Sbjct: 181 ALVALDRHTEAFLDKMDALIIKLREQLATKEQVDPSESESESDEEQKVSEIKTFLKNPMD 240
Query: 233 ---GGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAK---GGGTQA----- 281
G E +G +T + R L + + + D ++ L + G + A
Sbjct: 241 DSGGIEAYGMVACLTPPLGWYRSRLLTHHIEKTYGDTVLLLECVSDNETGKSSHASRFKE 300
Query: 282 --VRAVLTSSDEDKDLLKRELQTFEFE----QNKRVRGFREVIDLISASQKPLVAHNSLN 335
+R +LT+S++ K + Q+ E + N GF ++D I S P+V HN L
Sbjct: 301 IRLRIILTTSNKVKIRVVSAHQSIENDLIEAHNLERIGFTTIMDWILESNTPIVGHNLLL 360
Query: 336 DFTFIHSKFLAPLPPNMNEFICSL 359
D + + KF PLP EF SL
Sbjct: 361 DLLYCYEKFYQPLPNTCAEFSASL 384
>gi|354468613|ref|XP_003496747.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 3 [Cricetulus
griseus]
Length = 590
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 85/382 (22%), Positives = 155/382 (40%), Gaps = 81/382 (21%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSP--WHRVSTFDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P S FDTPE Y K+
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKSS--- 58
Query: 89 ERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
P F CQ+S + +A +GFD
Sbjct: 59 ---------------------------------------PDVKFVCQSSSIDFLASQGFD 79
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN GI YL++ +E ++ + + ++++ + AL+ E R +
Sbjct: 80 FNKVFCSGIPYLNQEEERHLREQFD-----EKRSQANGAGALAKCPVTIPEDQRKFIDQ- 133
Query: 209 KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLV 268
++ + + E + S+ ++ C+ Q +L+ + L
Sbjct: 134 --------------VIEKIENFLQNKE----KKSLDLEPCTGFQRKLIYQTL----SWKF 171
Query: 269 PLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISASQ 325
P I + T+ R ++ S ++++ +RE + + EQ + GF VI I+ S+
Sbjct: 172 PKGIHVETLETEKKERHIVISKVDEEERKRREQEKYAKEQEELNDAVGFSRVIHAIANSR 231
Query: 326 KPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNI 385
K +V HN L D +F PLP ++NEF FP+++D L+ P K + N
Sbjct: 232 KLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMTICVFPRLLDTK-LMASTQPFKDIIN- 289
Query: 386 SATIAYLKNRF----FAPIEME 403
+ ++A L+ R F P ++E
Sbjct: 290 NTSLAELEKRLKETPFDPPKVE 311
>gi|345802287|ref|XP_003434899.1| PREDICTED: poly(A)-specific ribonuclease PARN [Canis lupus
familiaris]
Length = 592
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 86/382 (22%), Positives = 152/382 (39%), Gaps = 77/382 (20%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE
Sbjct: 2 EIIRSNFKSNLHKVYEAIKEADFFAIDGEFSGISDGPSVTALTNGFDTPE---------- 51
Query: 89 ERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
ER P F CQ+S + +A +GFD
Sbjct: 52 ER-----------------------------------SSPDVKFVCQSSSIDFLASQGFD 76
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN +GI YL+ +E ++ + + +S+ + ALS V
Sbjct: 77 FNKVFRNGIPYLNHEEERQLREQYD-----EKRLQSNGAGALSY------------VSPN 119
Query: 209 KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLV 268
+ C + + + + + + + Q ++ ++ C+ Q +L+ + L
Sbjct: 120 TSKCPVTIPEDQKKFIDQVVEKIENLLQSEESKNLDLEPCTGFQRKLIYQTL----SWKY 175
Query: 269 PLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISASQ 325
P I T+ R ++ S ++++ +RE Q EQ + GF VI I+ S
Sbjct: 176 PKGIHVDTLETEKKERYIVISKVDEEERKRREQQKLAKEQEELNDAVGFSRVIHAIANSG 235
Query: 326 KPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNI 385
K ++ HN L D +F PLP ++NEF FP+++D L+ P K + N
Sbjct: 236 KLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMASTQPFKDIIN- 293
Query: 386 SATIAYLKNRF----FAPIEME 403
+ ++A L+ R F P ++E
Sbjct: 294 NTSLAELEKRLKETPFNPPKVE 315
>gi|194382480|dbj|BAG64410.1| unnamed protein product [Homo sapiens]
Length = 207
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 18/141 (12%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F + QF +C FK Y Y P F CQ+S + +A +GFD
Sbjct: 62 MDFLLFQFGLCTFK--------YDYT--------DSKSSPDVKFVCQSSSIDFLASQGFD 105
Query: 149 FNTCIYDGISYLSEAQESTVK 169
FN +GI YL++ +E ++
Sbjct: 106 FNKVFRNGIPYLNQEEERQLR 126
>gi|344292090|ref|XP_003417761.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Loxodonta
africana]
Length = 592
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 84/384 (21%), Positives = 149/384 (38%), Gaps = 81/384 (21%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPE---------- 51
Query: 89 ERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
+ P F CQ+S + +A +GFD
Sbjct: 52 -----------------------------------ERSSPDVKFVCQSSSIDFLASQGFD 76
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSS--SPALSVADTVFIERVRSRVK 206
FN +GI YL++ +E ++ + + + S SP S + E + +
Sbjct: 77 FNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGAGALSYVSPNTSKCPVMVPEEQKKFID 136
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 266
+V + ++ E ++ ++ C+ Q +L+ + L
Sbjct: 137 Q---------------VVEKIEDLLQSDEN----KNLDLEPCTGFQRKLIYQTL----SW 173
Query: 267 LVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTF--EFEQNKRVRGFREVIDLISA 323
P I + T+ R ++ S ++++ +RE Q E E GF VI I+
Sbjct: 174 KYPKGIHIETLETEKKERYIVISKVDEEERKRREQQKHAKELEGLNDAVGFSRVIHAIAN 233
Query: 324 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMT 383
S K ++ HN L D +F PLP ++NEF FP+++D L+ P K +
Sbjct: 234 SGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMASTQPFKDII 292
Query: 384 NISATIAYLKNRF----FAPIEME 403
N + ++A L+ R F P ++E
Sbjct: 293 N-NTSLAELEKRLKETPFNPPKVE 315
>gi|327300148|ref|XP_003234767.1| hypothetical protein TERG_05358 [Trichophyton rubrum CBS 118892]
gi|326463661|gb|EGD89114.1| hypothetical protein TERG_05358 [Trichophyton rubrum CBS 118892]
Length = 560
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 109/453 (24%), Positives = 190/453 (41%), Gaps = 52/453 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETA----YLKAKF 86
++T+ NF+ L + I F+A+ + +G F+ S + + + Y + K
Sbjct: 2 EVTRNNFSRLLPRMLQDIGDCSFVALDFEFSGIFNQKLRPASAYVDGDLSLQKRYEEVKQ 61
Query: 87 AAERFQILQFAICPFKLQASKVIAY---PYNFHLFPRDELKMGMPSYSFTCQTSYLTAMA 143
AAE +QILQ + ++ S+ Y PYN L P + ++G+ ++ Q+S L +
Sbjct: 62 AAEEYQILQVGLT-LVVEDSQNDTYSLRPYNIPLSPILDPRLGV-ERKWSFQSSALAFLM 119
Query: 144 KEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHA--TKSSSSPALSVADTV----- 196
GF + DG+ Y+S +E A+D A K SS +L DT+
Sbjct: 120 SHGFRVESIFTDGVPYISMKEEQD---------AMDRARKDKDKSSRSLINFDTLAPDHA 170
Query: 197 -FIERVRSRVKHW--KNACTDSDIKT-EAALVTSLRKIVLGGEQFGSRPSMTIDVCSER- 251
FI +VR ++ W K A ++ + + A +T+ K+ L + + R I V SE
Sbjct: 171 QFIRQVRHSIREWIEKPAPKEAYLNIPKPAGMTAAYKLPLELDNYQKRLVHQI-VQSEYP 229
Query: 252 -----------QVQLVLKMLED-FSDVLVPLI---IPAKGGGTQAVRAVLTS--SDEDKD 294
Q+ KM E+ F + I + G + + A++ S S D
Sbjct: 230 GYVSIGKKSFIQILPYDKMRENVFLQKKLQRTRCNIAGQKGFSWVIEAMMGSELSKLDLR 289
Query: 295 LLKRELQTFEFEQNKRVRGFREVIDLISASQKP-LVAHNSLNDFTFIHSKFLAPLPPNMN 353
LL R F + ++ E + S P LV HN D + F+ LP +
Sbjct: 290 LLWRPDGIFTAAEGSKLTKESEALREKLRSGPPVLVGHNLFTDLVNFYKCFIGDLPSRVE 349
Query: 354 EFICSLRLAFPQVIDVNYLLKDIGPVKKMTN-ISATIAYLKNRFFAPIEMEIPNQANENE 412
+F ++ FP VID Y+ G ++ ++ +S + L +R E + +
Sbjct: 350 DFQQTINELFPLVIDTKYMATIGGVLRDASSALSTLMENLGSRAVPKFETHPDHSSYTVS 409
Query: 413 GKIH--GHNVVKICQLFGKLCSILKITPDAIES 443
+H G++ + Q+F KL L T + E+
Sbjct: 410 TPVHEAGYDSLMTAQIFLKLAVKLYETSSSREA 442
>gi|339715201|ref|NP_001229921.1| poly(A)-specific ribonuclease PARN isoform 3 [Homo sapiens]
gi|194377130|dbj|BAG63126.1| unnamed protein product [Homo sapiens]
Length = 593
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 82/382 (21%), Positives = 154/382 (40%), Gaps = 77/382 (20%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPE---------- 51
Query: 89 ERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
+ P F CQ+S + +A +GFD
Sbjct: 52 -----------------------------------ERSSPDVKFVCQSSSIDFLASQGFD 76
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN +GI YL++ +E ++ + + ++++ + ALS V
Sbjct: 77 FNKVFRNGIPYLNQEEERQLREQYD-----EKRSQANGAGALSY------------VSPN 119
Query: 209 KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLV 268
+ C + + + + + + + Q ++ ++ C+ Q +L+ + L
Sbjct: 120 TSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTL----SWKY 175
Query: 269 PLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISASQ 325
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I+ S
Sbjct: 176 PKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSG 235
Query: 326 KPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNI 385
K ++ HN L D +F PLP +++EF FP+++D L+ P K + N
Sbjct: 236 KLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQPFKDIIN- 293
Query: 386 SATIAYLKNRF----FAPIEME 403
+ ++A L+ R F P ++E
Sbjct: 294 NTSLAELEKRLKETPFNPPKVE 315
>gi|332845320|ref|XP_003315023.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Pan
troglodytes]
gi|397525569|ref|XP_003832734.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 3 [Pan
paniscus]
Length = 593
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 82/382 (21%), Positives = 154/382 (40%), Gaps = 77/382 (20%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPE---------- 51
Query: 89 ERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
+ P F CQ+S + +A +GFD
Sbjct: 52 -----------------------------------ERSSPDVKFVCQSSSIDFLASQGFD 76
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN +GI YL++ +E ++ + + ++++ + ALS V
Sbjct: 77 FNKVFRNGIPYLNQEEERQLREQYD-----EKRSQANGAGALSY------------VSPN 119
Query: 209 KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLV 268
+ C + + + + + + + Q ++ ++ C+ Q +L+ + L
Sbjct: 120 TSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTL----SWKY 175
Query: 269 PLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISASQ 325
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I+ S
Sbjct: 176 PKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSG 235
Query: 326 KPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNI 385
K ++ HN L D +F PLP +++EF FP+++D L+ P K + N
Sbjct: 236 KLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQPFKDIIN- 293
Query: 386 SATIAYLKNRF----FAPIEME 403
+ ++A L+ R F P ++E
Sbjct: 294 NTSLAELEKRLKETPFNPPKVE 315
>gi|384490758|gb|EIE81980.1| hypothetical protein RO3G_06685 [Rhizopus delemar RA 99-880]
Length = 622
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/326 (22%), Positives = 130/326 (39%), Gaps = 43/326 (13%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++ K++F + L IK + +DFI+V + TG + P ++ D Y K K +
Sbjct: 2 EVLKSDFEKILPVIKEALLEADFISVDAEFTG-LTPPNIQMFQTDDLTQRYNKIKSCVQE 60
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F I+Q+ +C FK + IA P+NF++F D + FT S L + FD
Sbjct: 61 FTIIQYGVCAFKRDKETGDFIAKPFNFYIFGNDSTDI-HSRRVFTSTASSLAFLRSNKFD 119
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN I +GI + + +E + ++ T S +L+ F++ R+ + W
Sbjct: 120 FNKLIDEGIPFYNFTEEGSFNSTQSGTSMLNRRTYIKES-SLTTNGKNFLDNARTAIATW 178
Query: 209 KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLV 268
T+ +P + + S +L+ + + + + V
Sbjct: 179 LQGNTE-------------------------KP-LVVQTNSHFYKKLITQEVLEKHNGYV 212
Query: 269 PLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPL 328
+ P Q VR L + E + E + + FR VI+ I ++ P+
Sbjct: 213 Q-VAPRDSKHVQLVR-----------LKEEEKRQREAKVSSPTLNFRAVIEAIKDAKCPV 260
Query: 329 VAHNSLNDFTFIHSKFLAPLPPNMNE 354
VAHN D +F LP + E
Sbjct: 261 VAHNGALDIFHTVDQFWQYLPETIEE 286
>gi|326480283|gb|EGE04293.1| CAF1 family ribonuclease [Trichophyton equinum CBS 127.97]
Length = 585
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 95/394 (24%), Positives = 167/394 (42%), Gaps = 45/394 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETA----YLKAKF 86
++T+ NF+ L + I F+A+ + +G F+ S + + + Y + K
Sbjct: 2 EVTRNNFSRLLPRMLQDIGDCSFVALDFEFSGIFNQKLRPASAYVDGDLSLQKRYEEVKQ 61
Query: 87 AAERFQILQFAICPFKLQASKVIAY---PYNFHLFPRDELKMGMPSYSFTCQTSYLTAMA 143
AAE +QILQ + ++ + Y PYN L P + ++G+ ++ Q+S L +
Sbjct: 62 AAEEYQILQVGLT-LVVEDDQNDTYSLRPYNIPLSPILDPRLGV-ERKWSFQSSALAFLK 119
Query: 144 KEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTV------F 197
GF + DG+ Y+S +E + M H K S +L DT+ F
Sbjct: 120 SHGFRVESIFTDGVPYISMKEEQ-------DAMDRAHTDKDKLSRSLINFDTLAPDHAQF 172
Query: 198 IERVRSRVKHW--KNACTDSDIKT-EAALVTSLRKIVLGGEQFGSRPSMTIDVCSER--- 251
I++VR ++ W K A D+ + + A +T+ K+ L + + R I V SE
Sbjct: 173 IQQVRHSIREWIEKPAPKDTYLNIPKPAGMTAAYKLPLELDNYQKRLVHQI-VQSEYPGY 231
Query: 252 ---------QVQLVLKMLED-FSDVLVPLI---IPAKGGGTQAVRAVLTS--SDEDKDLL 296
Q+ KM E+ F + I ++ G + + A++ S S D LL
Sbjct: 232 VSIGKKSFIQILPYDKMRENVFLQKKLQRTRCNIASQKGFSWVIEALMGSELSKLDLRLL 291
Query: 297 KRELQTFEFEQNKRVRGFREVIDLISASQKP-LVAHNSLNDFTFIHSKFLAPLPPNMNEF 355
R F + ++ E + S P LV HN D + F+ LP + +F
Sbjct: 292 WRPDGMFTAAEGSKLTKECEALREKLRSGPPVLVGHNLFTDLVNFYKCFIGDLPSRVEDF 351
Query: 356 ICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATI 389
++ FP VID Y+ G ++ ++ +T+
Sbjct: 352 QQAINELFPLVIDTKYMATTGGVLRDASSALSTL 385
>gi|326473493|gb|EGD97502.1| CAF1 family ribonuclease [Trichophyton tonsurans CBS 112818]
Length = 585
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 95/394 (24%), Positives = 167/394 (42%), Gaps = 45/394 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETA----YLKAKF 86
++T+ NF+ L + I F+A+ + +G F+ S + + + Y + K
Sbjct: 2 EVTRNNFSRLLPRMLQDIGDCSFVALDFEFSGIFNQKLRPASAYVDGDLSLQKRYEEVKQ 61
Query: 87 AAERFQILQFAICPFKLQASKVIAY---PYNFHLFPRDELKMGMPSYSFTCQTSYLTAMA 143
AAE +QILQ + ++ + Y PYN L P + ++G+ ++ Q+S L +
Sbjct: 62 AAEEYQILQVGLT-LVVEDDQNDTYSLRPYNIPLSPILDPRLGV-ERKWSFQSSALAFLK 119
Query: 144 KEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTV------F 197
GF + DG+ Y+S +E + M H K S +L DT+ F
Sbjct: 120 SHGFRVESIFTDGVPYISMKEEQ-------DAMDRAHTDKDKLSRSLINFDTLAPDHAQF 172
Query: 198 IERVRSRVKHW--KNACTDSDIKT-EAALVTSLRKIVLGGEQFGSRPSMTIDVCSER--- 251
I++VR ++ W K A D+ + + A +T+ K+ L + + R I V SE
Sbjct: 173 IQQVRHSIREWIEKPAPKDTYLNIPKPAGMTAAYKLPLELDNYQKRLVHQI-VQSEYPGY 231
Query: 252 ---------QVQLVLKMLED-FSDVLVPLI---IPAKGGGTQAVRAVLTS--SDEDKDLL 296
Q+ KM E+ F + I ++ G + + A++ S S D LL
Sbjct: 232 VSIGKKSFIQILPYDKMRENVFLQKKLQRTRCNIASQKGFSWVIEALMGSELSKLDLRLL 291
Query: 297 KRELQTFEFEQNKRVRGFREVIDLISASQKP-LVAHNSLNDFTFIHSKFLAPLPPNMNEF 355
R F + ++ E + S P LV HN D + F+ LP + +F
Sbjct: 292 WRPDGMFTAAEGSKLTKECEALREKLRSGPPVLVGHNLFTDLVNFYKCFIGDLPSRVEDF 351
Query: 356 ICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATI 389
++ FP VID Y+ G ++ ++ +T+
Sbjct: 352 QQAINELFPLVIDTKYMATTGGVLRDASSALSTL 385
>gi|351703955|gb|EHB06874.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Heterocephalus glaber]
Length = 466
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 89/188 (47%), Gaps = 18/188 (9%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTGSFS--SPWHRVSTFDTPETAYLKAKFAAERFQIL 94
F +SL ++ + +DF+ + ++ TG S S ++S FD P YLK + + ++F I
Sbjct: 8 FEQSLPLLQKLLREADFVGLDIEFTGLRSNLSGLQQISLFDLPSDWYLKTRQSIQQFTIC 67
Query: 95 QFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNT 151
Q + F + +++ IA+ NF LFP G+ F+ Q S + + + GF++N
Sbjct: 68 QIGLSVFSSIEGESNMYIAHSCNFFLFPT---TFGILDTEFSFQASSVQFLNQYGFNYNK 124
Query: 152 CIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNA 211
+ GI Y++E QE +K H+ + + S D I+ V + V W +
Sbjct: 125 FLKKGIPYMNEEQEKKIK----------HSILTGNWKVRSSLDKDQIKVVINEVTRWLDL 174
Query: 212 CTDSDIKT 219
+ D T
Sbjct: 175 AEEGDQMT 182
>gi|332240355|ref|XP_003269353.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 3 [Nomascus
leucogenys]
Length = 593
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 82/382 (21%), Positives = 153/382 (40%), Gaps = 77/382 (20%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPE---------- 51
Query: 89 ERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
+ P F CQ+S + +A +GFD
Sbjct: 52 -----------------------------------ERSSPDVKFVCQSSSIDFLASQGFD 76
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN +GI YL++ +E ++ + + ++++ + ALS V
Sbjct: 77 FNKVFRNGIPYLNQEEERQLREQYD-----EKRSQANGAGALSY------------VSPN 119
Query: 209 KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLV 268
+ C + + + + + + Q ++ ++ C+ Q +L+ + L
Sbjct: 120 TSKCPVPIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTL----SWKY 175
Query: 269 PLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISASQ 325
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I+ S
Sbjct: 176 PKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSG 235
Query: 326 KPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNI 385
K ++ HN L D +F PLP +++EF FP+++D L+ P K + N
Sbjct: 236 KLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQPFKDIIN- 293
Query: 386 SATIAYLKNRF----FAPIEME 403
+ ++A L+ R F P ++E
Sbjct: 294 NTSLAELEKRLKETPFNPPKVE 315
>gi|303275732|ref|XP_003057160.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461512|gb|EEH58805.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 285
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 75 DTPETAYLKAKFAAERFQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYS- 131
DTPE + K F +LQ+ +C F ++ + A P+NF LFP +P S
Sbjct: 112 DTPEERFRKVHACVRAFAVLQYGVCTFHFDPRSRRWTARPFNFWLFPDHR---ALPDASA 168
Query: 132 FTCQTSYLTAMAKEGFDFNTCIYDGISYL 160
F CQ S L+ +A GFDFN CI +G+ Y+
Sbjct: 169 FGCQASSLSFLANNGFDFNKCIREGVPYV 197
>gi|348584112|ref|XP_003477816.1| PREDICTED: poly(A)-specific ribonuclease PARN-like isoform 2 [Cavia
porcellus]
Length = 591
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 84/382 (21%), Positives = 154/382 (40%), Gaps = 77/382 (20%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I + NF +L ++ I +DF A+ + +G P T FDTPE
Sbjct: 2 EIIRNNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPE---------- 51
Query: 89 ERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
ER P F CQ+S + +A +GFD
Sbjct: 52 ER-----------------------------------SSPDVKFVCQSSSIDFLASQGFD 76
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN +GI YL++ +E ++ + + ++++ + AL+ V
Sbjct: 77 FNKVFRNGIPYLNQEEERQLREQYD-----EKRSQANGAGALAY------------VSPN 119
Query: 209 KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLV 268
+ C + + + + + + + Q + ++ ++ C+ Q +L+ + L
Sbjct: 120 TSKCPVTIPEDQKKFIDQVVEKIEDLLQSEANKTLDLEPCTGFQRKLIYQTL----SWKY 175
Query: 269 PLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISASQ 325
P I + T+ R ++ S +++ +RE Q EQ + GF VI I+ S
Sbjct: 176 PKGIHIETLETEKKERYIVISKVNEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSG 235
Query: 326 KPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNI 385
K +V HN L D +F PLP ++ EF FP+++D L+ P K + N
Sbjct: 236 KLVVGHNMLLDVMHTIHQFYCPLPVDLKEFKEMTTCVFPRLLDTK-LMASTQPFKDIIN- 293
Query: 386 SATIAYLKNRF----FAPIEME 403
+ ++A L+ R F+P ++E
Sbjct: 294 NTSLAELEKRLKETPFSPPKVE 315
>gi|195999750|ref|XP_002109743.1| hypothetical protein TRIADDRAFT_52927 [Trichoplax adhaerens]
gi|190587867|gb|EDV27909.1| hypothetical protein TRIADDRAFT_52927 [Trichoplax adhaerens]
Length = 511
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 74/144 (51%), Gaps = 3/144 (2%)
Query: 35 TNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQIL 94
+ NE++ +K+ I+ + F+A+ + TG S F++P Y K + F ++
Sbjct: 21 VDLNEAIDILKSIINKAAFVALDGEFTGINSDESRAFDMFESPAQRYKKISKIVQNFLMI 80
Query: 95 QFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTC 152
Q +C F K A+P++F++FP+D+ G F+CQ S + +++ F+FN
Sbjct: 81 QCGLCVFVPNEDKKSFTAFPFSFYIFPQDD-NSGPNKNGFSCQISSIKFLSQHKFNFNKV 139
Query: 153 IYDGISYLSEAQESTVKVRMGNPM 176
DG+ YL+ E+ ++++ M
Sbjct: 140 FNDGMPYLNSIVEAECRMKIEEKM 163
>gi|320165859|gb|EFW42758.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
Length = 813
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 3/140 (2%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
+ ++NF L +K I+ DF+A+ + TG S + FDT Y K + +A +F
Sbjct: 3 VDRSNFASVLPLVKQAIAKCDFVAIDAEFTGLHSERAAASNHFDTLAERYAKVRRSASQF 62
Query: 92 QILQFAICPFKLQASKVI--AYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
+LQ+ +C F+ + A P+NF++F R + P F Q S + + FDF
Sbjct: 63 GVLQYGVCAFRWLPERHTYEAQPFNFYVFQRPATRES-PDAQFLSQASSIEFLIDNHFDF 121
Query: 150 NTCIYDGISYLSEAQESTVK 169
GI++++ +E ++
Sbjct: 122 TRSFKTGITFINRTEEVALQ 141
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 25/194 (12%)
Query: 239 SRPSMTIDVCSERQVQLVLKMLEDFSDVLVPL---------IIPAKGG--------GTQA 281
+ P++ + VC+ +LV + E P+ PA G GT
Sbjct: 237 AEPTLLLPVCTSYMRRLVYQAFEQVVPPKYPVGFLVESIDPTDPAPPGHKAMTITRGTAE 296
Query: 282 VRAVLTSSDEDKDLL-KRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFI 340
+A + L ++E++ E + GFR VID IS +K +V HN L D
Sbjct: 297 EKAQRQEARTQAQLAAQQEIKALADEMMHQAIGFRHVIDCISEHKKLVVGHNMLLDLAHT 356
Query: 341 HSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLL--KDIG---PVKKMTNISATIAYLKNR 395
KF+ LP +++F FP V D +L ++G + ++ T+ Y +
Sbjct: 357 FDKFIGDLPEQLDDFKNQFAQVFPYVADTKHLASSSELGGRFESTALADLVRTLLYESDS 416
Query: 396 FFAPIEMEIPNQAN 409
API +E+P++ N
Sbjct: 417 --APINVELPDEFN 428
>gi|443682487|gb|ELT87068.1| hypothetical protein CAPTEDRAFT_222843 [Capitella teleta]
Length = 590
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 87/361 (24%), Positives = 133/361 (36%), Gaps = 88/361 (24%)
Query: 36 NFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQ 95
NFNE L I+ I +DF+A+ + TG P S FD+ Y K + A + F Q
Sbjct: 58 NFNEFLPLIEKSIFEADFVAIDCEFTG-LHLPGEGPSLFDSGADRYAKLRRAVQAFMPSQ 116
Query: 96 FAICPF-----KLQASKVI----------------------AYPYNFHLFPRDELKMGMP 128
I F L +K A+ YNF +FP L G
Sbjct: 117 IGISAFVRDKNSLYYAKYCVDLSVSLAYFSPHISPFLARYEAHTYNFFIFP---LSFGPI 173
Query: 129 SYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSP 188
F+CQ +Y+GIS L+E QE T+ + S
Sbjct: 174 DVQFSCQF----------------VYEGISVLNEEQEKTLSKHL--------RENELFSG 209
Query: 189 ALSVADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVC 248
+ D ++ V +V +W N E F + P
Sbjct: 210 LIRDVDESSLQSVCLQVTNWLNQSPKES------------------EFFFTIPP------ 245
Query: 249 SERQVQLVLKML-EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQ 307
E +++K L + FS++ I A+ G R ++DE + + Q E +
Sbjct: 246 -ELPEYIIIKELRQRFSNIW----ITAEKGKILVQR---VTTDERIKMEEDSKQAEEKKI 297
Query: 308 NKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVI 367
K++ GF +V + S+KPL+ HN D F++ K PLP + + L FP +
Sbjct: 298 TKKMLGFTQVFRSLIKSKKPLIGHNCFTDLLFLYEKCYQPLPESYLTYKAKLHTLFPIIY 357
Query: 368 D 368
D
Sbjct: 358 D 358
>gi|406865319|gb|EKD18361.1| CAF1 family ribonuclease [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 578
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 82/371 (22%), Positives = 147/371 (39%), Gaps = 35/371 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWH----RVSTFDTP--ETAYLKA 84
+I + +F L I HI+++ F+ L+ +G + P H R P + Y +
Sbjct: 2 EIDQAHFRPQLLSILQHIANASFVTFDLEMSGISTRPKHSTGNRTHDVGKPSLQAQYDEM 61
Query: 85 KFAAERFQILQFAICPFKLQASK--VIAYPYNFHLFP--RDELKMGMPSYSFTCQTSYLT 140
+ AAE FQ+LQ I + K +A P+NF+L P D + + + FT S
Sbjct: 62 RSAAETFQVLQVGITCVEEDRDKEFYLARPFNFNLTPLSADGVDLRL-DRQFTFSASACD 120
Query: 141 AMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPAL-----SVADT 195
+ + FDF +G+ YLS +E + A+K+++ P + VA
Sbjct: 121 FLNRNRFDFGKIFSEGVPYLSRDEEEERREEYAQ-----RASKNAAIPDIVIGLEDVATL 175
Query: 196 VFIERVRSRVKHW----KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSER 251
F R + W K +I +A + + ++ ++ P++ + ++
Sbjct: 176 EFSRTTRKAIAAWAKDEKAEYAFCNIGNDAGPMNAFQRRIVHQIVRNEFPALRVFARNDG 235
Query: 252 QVQLVLKM---LEDFSDVLVPLIIPAKGGGTQAVRAVLTS------SDEDKDLLKRELQT 302
V K+ E+ A G + +R + + S D + + +
Sbjct: 236 HFMQVEKLDVEREESFQRRQATRFNASIGKQKGLRWIFEALAGGDLSGIDPEWFRDKSSP 295
Query: 303 FEFEQNKRVRGFREVIDLISASQKPL-VAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRL 361
KRV+ + + +PL V HN D F+ F+ LP N+ F +
Sbjct: 296 NSESDWKRVQSELATVTTTLRTHRPLIVGHNLFADLAFLFRTFVGHLPVNVKHFQEDIHA 355
Query: 362 AFPQVIDVNYL 372
FP+VID Y+
Sbjct: 356 LFPRVIDTKYV 366
>gi|317147888|ref|XP_001822359.2| CAF1 family ribonuclease [Aspergillus oryzae RIB40]
Length = 561
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 98/474 (20%), Positives = 190/474 (40%), Gaps = 92/474 (19%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAA 88
IT F+ L I + ++S F+++ + +G S + P + ST + Y + K +A
Sbjct: 3 ITPKTFHFFLPRILDELASCSFVSIDFEFSGIACSSNGPNSKASTL---QDRYTEVKESA 59
Query: 89 ERFQILQFA--ICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
++++I+Q IC ++ I PYN +L P + ++ + Q+ + + +
Sbjct: 60 DKYRIVQIGLTICHEDTESGTYILKPYNLYLNPIIDRRLEV-GRDMCFQSGVVEFLLENK 118
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADT-----VFIERV 201
F N+ DG+ YLS +E+ R A + ++S + V +T F+ V
Sbjct: 119 FCLNSLYSDGVHYLSREEETIAIAR-----AAERYGRTSVRKVIDVKETEHDSLAFLGAV 173
Query: 202 RSRVKHWKNACTDSDIKTEAAL-VTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKML 260
R V W A ++ EA L + R+ +P + V + Q +LV +++
Sbjct: 174 RYLVDGWL-ALGEA---REAYLNIPPPRRYTA-----SPKPKIMPSVLNNFQKRLVHQLI 224
Query: 261 EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDL 320
E LV + PA ++ + D +K + ++ + K++ GFR +++
Sbjct: 225 EVEYPSLVTISRPA------FIQVIDYDEDREKAIQEQRMARARERVWKQI-GFRWIVEA 277
Query: 321 ISA---------------------------------------SQKP-LVAHNSLNDFTFI 340
+S + +P LV HN D ++
Sbjct: 278 LSGGDLSHLDPFCFGSIMNSSTVVEPQVSLHGFSEKLQQRLRTHRPVLVGHNLFTDVVYL 337
Query: 341 HSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLK----DIGPVKKMTNISATIAYLKNRF 396
+ F PLP + EF + FP ++D Y+ I P ++ I+ + ++K
Sbjct: 338 YRCFFGPLPDKLEEFQAIVHHMFPILMDTKYMATHDCGSITPKSSLSEINDNLLHIKTPK 397
Query: 397 FAPIEMEIPNQANENEGKIH---GHNVVKICQLFGKLCSILK-----ITPDAIE 442
+ E + N +I G++ + Q+F KL + L+ PD +E
Sbjct: 398 ISVHE----QHSKYNSQRIDHEAGYDSLLTAQIFIKLSAQLRDGGISKLPDPVE 447
>gi|328717201|ref|XP_001944100.2| PREDICTED: poly(A)-specific ribonuclease PARN-like [Acyrthosiphon
pisum]
Length = 534
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/354 (19%), Positives = 139/354 (39%), Gaps = 41/354 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
+IT NF L I++ I FI++ ++ + F + S FDT E Y K
Sbjct: 3 EITCENFYSELPVIESAIKECAFISLDMEFSKLFDNISKPFSLFDTTEERYNKLHQKVSD 62
Query: 91 FQILQF--AICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
+QF AI + + Y+F+ +P+ K QTS + + K FD
Sbjct: 63 ITCIQFGMAIYVYDDKIKTFKTSTYSFYTYPQTFYK---SDSVVNFQTSCVEFLCKHNFD 119
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN + + YL++ +E +K M + D K++
Sbjct: 120 FNKLFHSRVPYLTDEEELKIKSEMLDEFFFD--------------------------KYF 153
Query: 209 KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLK--MLEDFSDV 266
+ I+ E V + +G + + I+ C+E ++++ +L+ +
Sbjct: 154 ETNIKFRSIEEELMKVLKIVSEWYDTANYGEQTFLEINGCNEPAYTILMQYYLLKKLKYI 213
Query: 267 LVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKREL-QTFEFEQNKRVRGFREVIDLISASQ 325
L+ + ++ + ++L + + + + ++ G + ++ LIS +
Sbjct: 214 LI-------DESQLGLNITKIEANTNSEILNKTIHENLKLNLLNKMMGIKYLMKLISKLK 266
Query: 326 KPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPV 379
KP++ HN D + ++F PLP N +F + F + D L K++ +
Sbjct: 267 KPIIGHNCALDILILSNQFFTPLPENFKDFQNFVFNNFGPIYDTKLLCKEVKRI 320
>gi|255088137|ref|XP_002505991.1| ribonuclease [Micromonas sp. RCC299]
gi|226521262|gb|ACO67249.1| ribonuclease [Micromonas sp. RCC299]
Length = 832
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 129/344 (37%), Gaps = 49/344 (14%)
Query: 31 QITKTNFNESLSEIKNHISSS--DFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+T+ NF E+LS ++ I F + + TG +SP DTPE + K
Sbjct: 2 DVTRDNFEEALSALQEAIDDPLFAFWSFDCEFTGLNASPTTGHDLLDTPEERFAKVHACV 61
Query: 89 ERFQILQF--AICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F +LQ AI F + P+NF P + G+ F+ Q + L + G
Sbjct: 62 RAFTVLQVGVAIFSFDPHTRRWTCRPFNFWTIPDAKAGRGV----FSAQVASLQFLVDCG 117
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FD N C+ GI ++ A+ S R SS D F+ + +V
Sbjct: 118 FDLNKCVARGIPFVPAAERSRAAAREARLAQRPPIIPSSDR------DKAFVANLLIKVA 171
Query: 207 HW-----------KNACTDSDIKTEA--ALVTSLRKIVLGGEQFGSRPSMTIDVCSERQV 253
W + D D+ + + +L +L G+ PS +
Sbjct: 172 EWLSRSDDDGDGDGDGARDEDLCLDPTNGFLRALTYQILEGD-----PSRFGGNKARDDP 226
Query: 254 QLVLKMLEDFSDVLVPLIIPAKGGGTQAV--RAVLTSSDEDKDLLKRELQTFEFEQNKRV 311
+ DF+D P I+ ++ + RA ++D KD +K
Sbjct: 227 GFIASTSCDFADGR-PRIVLSRASREEVATHRAAKEAADRKKDQMK-------------- 271
Query: 312 RGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEF 355
GF V+ + A +P V HN+L D ++ KFLA L + F
Sbjct: 272 EGFGLVLAKLGACGRPCVGHNALFDCVYVVDKFLAELDGSFEGF 315
>gi|378729834|gb|EHY56293.1| poly(A)-specific ribonuclease [Exophiala dermatitidis NIH/UT8656]
Length = 667
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 5/184 (2%)
Query: 28 PIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFA 87
P IT F +I +I+ S F+A L+ +G S T + Y + A
Sbjct: 37 PRMNITGAEFEGEAIKIIQNIADSRFVAFDLEFSGVAGRRPAGGSGKLTLQDYYQDLRAA 96
Query: 88 AERFQILQ--FAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKE 145
A+ +QILQ + Q + +A PYNF L P K + ++ + ++ + +
Sbjct: 97 AQIYQILQVGLTVVAEDTQKGQYVARPYNFDLSPLPATKEQVFRRVWSYNSGAVSFLIRN 156
Query: 146 GFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRV 205
GF+ + I G+ YLS +E V+ ++ + D A + L D+ +E +R +
Sbjct: 157 GFNIDRPILQGVQYLSRQEEEQVRKKL---LEDDQARANIPDMILKEDDSPLVEHIRQSI 213
Query: 206 KHWK 209
K W+
Sbjct: 214 KDWQ 217
>gi|156033193|ref|XP_001585433.1| hypothetical protein SS1G_13672 [Sclerotinia sclerotiorum 1980]
gi|154699075|gb|EDN98813.1| hypothetical protein SS1G_13672 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 588
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 91/376 (24%), Positives = 148/376 (39%), Gaps = 45/376 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWH----RVSTFDTP--ETAYLKA 84
++ K N+ L I IS++ F++ L+ +G + P H R P + Y +
Sbjct: 2 EVDKDNWKRLLLPILKDISNATFVSFDLEMSGITTRPKHSNQERTHDVGKPSLQQQYEEV 61
Query: 85 KFAAERFQILQFAICPFKLQASKVIAYPYNFHLFP---RDELKMGMPSYSFTCQTSYLTA 141
K AAE FQ+LQ I + + +A PYN +L P D + ++ F+ S
Sbjct: 62 KDAAETFQVLQIGITCVE-EDHYYLAKPYNINLSPLLIYDRVFDLDRNFCFSSSASNF-- 118
Query: 142 MAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERV 201
+ GFD G+ YLSE +E+ + R + + + S V F R
Sbjct: 119 LQSNGFDIGAVFTKGVPYLSEQEEAEARERYDQRIERNASIPSIIFDPSDVGTLEFYRRA 178
Query: 202 RSRVKHW------KNACTDSDIKTEAALVTSLRKIV--LGGEQF----------GSRPSM 243
RS + W K A + D + L R++V L +F GS +
Sbjct: 179 RSTITEWIEAKEPKMASVNVD-NPKGPLNGFQRRLVHQLVRSEFPQYRCFARLEGSFMQV 237
Query: 244 TIDVCSERQVQLVLKMLEDFSDVLVP-----LIIPAKGGG--TQAVRAVLTSSDEDKDLL 296
+ + +R+ + ++ L+ F+ + I A GG T L + DE+
Sbjct: 238 EM-IDHDREAKKTIEQLKTFNQRIAQQSGARFIFEALCGGDLTGIDPMWLYTDDENTQPN 296
Query: 297 KRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFI 356
+ F Q VI + Q +V HN D F++ F+ LP + +F
Sbjct: 297 HHSSRPFLESQ------LAAVIKTLKKKQHVIVGHNLFTDLCFLYKTFIGTLPAGVGDFQ 350
Query: 357 CSLRLAFPQVIDVNYL 372
+ FP VID YL
Sbjct: 351 SQIHSLFPFVIDTKYL 366
>gi|403340574|gb|EJY69575.1| Poly(A)-specific ribonuclease PARN [Oxytricha trifallax]
Length = 927
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 19/178 (10%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAA 88
IT+ NF E L I++ I+S+DFIA + +G F H +DT E Y K
Sbjct: 3 ITRENFIELLPLIRHSINSADFIAYDTEFSGLSIGFDDKGHE---YDTVEDRYQKLVHNC 59
Query: 89 ERFQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
R Q +C F+ + K + P+NF++FP L + Q S + +
Sbjct: 60 SRMNTFQVGLCTFRWIPEKMKYVCRPFNFYVFPDSSL---FEDINIQFQASNIKFLTDNH 116
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVD--------HATKSSSSPALSVADTV 196
FDFN GISY ++ V R N ++ + H SS + +++ + V
Sbjct: 117 FDFNKLFTQGISYQRLSKRDEVYRRAMNRVSEEKQHNRFYTHLGDSSQAQLIAIMEQV 174
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 286 LTSSDEDKDLLKRELQT-FEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKF 344
LT ++ K L ++E + F +E GF V++ + ++KP++ HN + D +++++F
Sbjct: 327 LTEEEKAKLLKQKEFERLFTYEM-----GFSLVVEDLMKAKKPIIGHNMIYDICYLYNQF 381
Query: 345 LAPLPPNMNEFICSLRLAFPQVIDVNYL 372
+ LP ++FI FP + D L
Sbjct: 382 IDKLPNEYSDFIKIWNEQFPYIYDTKVL 409
>gi|403332061|gb|EJY65020.1| Poly A-specific ribonuclease PARN, putative [Oxytricha trifallax]
Length = 560
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%)
Query: 306 EQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQ 365
EQ + + GF +I L+ QKP+++HN + D F++ KF+ PLP N+++F L PQ
Sbjct: 142 EQQEDLLGFSRIIKLLGDLQKPIISHNGVMDMMFLYEKFIGPLPENVDDFKAKLNGLLPQ 201
Query: 366 VIDVNYLL 373
+ D +++
Sbjct: 202 IFDTKHMI 209
>gi|451993381|gb|EMD85855.1| hypothetical protein COCHEDRAFT_1187827 [Cochliobolus
heterostrophus C5]
gi|452000264|gb|EMD92725.1| hypothetical protein COCHEDRAFT_1172140 [Cochliobolus
heterostrophus C5]
Length = 620
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 80/189 (42%), Gaps = 19/189 (10%)
Query: 47 HISSSDFIAVSLQNTGSFS----SPWHRVSTFDTPETAYLKAKFAAERFQILQFAI--CP 100
+I+ +DF++ L+ +G S P F T E Y + K A+R+QILQ I
Sbjct: 18 NIAEADFVSFDLELSGIPSRIQDKPPRGPGRF-TMEERYAETKMGADRYQILQVGITCAR 76
Query: 101 FKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYL 160
F A K + PYN + P + ++ Q+ T + K GFD +G+ YL
Sbjct: 77 FDYIADKYVLRPYNIDISPLFDERIDF-EREIRFQSGACTFLLKNGFDLGLPFANGVQYL 135
Query: 161 SEAQESTVKVRMGNPMAVDHATKSSSSPAL-----SVADTVFIERVRSRVKHWKNACTDS 215
S ++ K R MA D K + P L V F+ RVR + WK +
Sbjct: 136 S--RQEAEKARQ---MACDRLEKKNPVPDLHLKEGDVESLDFMRRVREAINKWKTTTSSG 190
Query: 216 -DIKTEAAL 223
DI T L
Sbjct: 191 LDITTHTGL 199
Score = 42.7 bits (99), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 314 FREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
F ++ + Q LV HN D +++ F+ LP +++F + FP++ID YL
Sbjct: 307 FDRAMERLKTRQPVLVGHNMFTDIVYLYRTFVGELPDTLDDFQDVIHELFPKIIDTKYL 365
>gi|395860986|ref|XP_003802778.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Otolemur
garnettii]
Length = 588
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 80/371 (21%), Positives = 143/371 (38%), Gaps = 77/371 (20%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPE---------- 51
Query: 89 ERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
ERF P F CQ+S + +A +GFD
Sbjct: 52 ERFS-----------------------------------PDVKFVCQSSSIDFLASQGFD 76
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN ++GI YL++ +E ++ + + A + SP S E + +
Sbjct: 77 FNKVFHNGIPYLNQEEERQLREQYDEKRS--QANGAYVSPNASKCRLTIPEDQKKFIDQ- 133
Query: 209 KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLV 268
+V + ++ E ++ ++ C+ Q +L+ + L
Sbjct: 134 --------------VVEKIEDLLQSEE----NKNLDLEPCTGFQRKLIYQTL----SWKY 171
Query: 269 PLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR---GFREVIDLISASQ 325
P I + T+ + S D++ KR Q ++ + + GF VI I+ S
Sbjct: 172 PKGIHVETLETEKKEQYIAISKVDEEERKRREQEKHAKEQEELNDAVGFSRVIHAIANSG 231
Query: 326 KPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNI 385
K ++ HN L D +F PLP ++ +F FP+++D L+ P K + N
Sbjct: 232 KLVIGHNMLLDVMHTVHQFYYPLPADLTDFKKMTTCVFPRLLDTK-LMASTQPFKDIIN- 289
Query: 386 SATIAYLKNRF 396
+ ++A L+ R
Sbjct: 290 NTSLAELEKRL 300
>gi|410960341|ref|XP_003986750.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Felis catus]
Length = 681
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 16/154 (10%)
Query: 69 HRVSTFDTPETAYLKAKFAAERFQILQFAICPF---KLQASKVIAYPYNFHLFPRDELKM 125
++S FD P YLK + + ++F I Q + F + +++K +A+ NF LFP
Sbjct: 34 QQISLFDLPSEWYLKTRQSVQQFTICQIGLSVFSSIEGESNKYVAHSCNFFLFPT---TF 90
Query: 126 GMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSS 185
G+ F+ Q S + + + GFD+N + +GI Y++E QE +K H +
Sbjct: 91 GVLDSEFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQEKKIK----------HNILTG 140
Query: 186 SSPALSVADTVFIERVRSRVKHWKNACTDSDIKT 219
+ S D I+ V V W + + D T
Sbjct: 141 NWKVRSSLDKDQIKVVIDEVTRWLDLAEEGDWMT 174
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 311 VRGFREVIDLISASQK--PLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVID 368
+R + +D + A ++ PLV HN + D +H KF PLP + ++F ++ FP +ID
Sbjct: 394 MRALVQAVDALPAKRRSVPLVGHNMMTDLLHLHEKFFRPLPESYDQFKLNIHNLFPVLID 453
Query: 369 VNYLLKDI 376
+ KDI
Sbjct: 454 TKNVTKDI 461
>gi|403330912|gb|EJY64371.1| Putative poly [Oxytricha trifallax]
Length = 1969
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 92/205 (44%), Gaps = 15/205 (7%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
+IT NF +L I+ I + +FI++ + +G S + ++T E YLK K+ +
Sbjct: 2 EITSANFEANLPLIQESIETCEFISIDTEFSGLSISMDDKPHNYETVEERYLKTKYIVTK 61
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F Q IC F Q + P++F++FP+ +++ + Q+S + + K FD
Sbjct: 62 FLAFQIGICTFHWNQQEKRYYCRPFSFYVFPKSKIQ----DSTVLIQSSAINFLTKNHFD 117
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSS----PALSVADTVFIERVRSR 204
FN +S+ ++ ++ + A ++ SS LS +T +E++
Sbjct: 118 FNKLFSKPLSFCQLSRIDEIE-----NLCKQKANRTLSSSRFISQLSEPNTKRLEQILEE 172
Query: 205 VKHWKNACTDSDIKTEAALVTSLRK 229
+ W S +K + SLRK
Sbjct: 173 IDEWVYDSNSSQLKHYSIDSLSLRK 197
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 313 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
GF VI + S+KP+V HN + D FI+++F LP + +F +L FP+ D L
Sbjct: 363 GFTRVIGTMVKSKKPIVGHNLMFDICFIYNQFCGDLPDSFKDFYTLWKLFFPETYDTKVL 422
>gi|297283531|ref|XP_002808334.1| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
PARN-like [Macaca mulatta]
Length = 596
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 81/385 (21%), Positives = 153/385 (39%), Gaps = 80/385 (20%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPE---------- 51
Query: 89 ERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
+ P F CQ+S + +A +GFD
Sbjct: 52 -----------------------------------ERSSPDVKFVCQSSSIDFLASQGFD 76
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN +GI YL++ +E ++ + + ++++ + ALS V
Sbjct: 77 FNKVFRNGIPYLNQEEERQLREQYD-----EKRSQANGAGALSY------------VSPN 119
Query: 209 KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLV 268
+ C + + + + + + + Q ++ ++ C+ Q +L+ + L
Sbjct: 120 TSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTL----SWKY 175
Query: 269 PLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISASQ 325
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I+ S
Sbjct: 176 PKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSG 235
Query: 326 KPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVI---DVNYLLKDIGPVKKM 382
K ++ HN L D +F PLP +++EF FP+ D++++ K +
Sbjct: 236 KLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRXAFFEDLSFIXKSQLGTDII 295
Query: 383 TNISATIAYLKNRF----FAPIEME 403
N S +A L+ R F+P ++E
Sbjct: 296 NNTS--LAELEKRLKEIPFSPPKVE 318
>gi|330914662|ref|XP_003296730.1| hypothetical protein PTT_06908 [Pyrenophora teres f. teres 0-1]
gi|311331005|gb|EFQ95186.1| hypothetical protein PTT_06908 [Pyrenophora teres f. teres 0-1]
Length = 632
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 80/203 (39%), Gaps = 17/203 (8%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAA 88
I +F L + +IS +DF++ L+ +G R T E Y + K A
Sbjct: 3 IDAASFPHHLLGLFVNISEADFVSFDLELSGIPSRIQDKPARGPGRLTLEERYAETKMGA 62
Query: 89 ERFQILQFAI--CPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
+R+QILQ I F A K + PYN + P + ++ QT T + G
Sbjct: 63 DRYQILQVGITCARFDYIADKYVLRPYNITISPLLDERLDF-EREVRFQTGACTFLLNNG 121
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPAL-----SVADTVFIERV 201
FD G+ YLS + K MA D + P L V F+ R+
Sbjct: 122 FDLGAPFAKGVQYLSREEAERAKQ-----MAWDRLENKNPIPDLQLKKEDVESLDFMRRI 176
Query: 202 RSRVKHWKNACTDS-DIKTEAAL 223
R +K WK + S D+ T L
Sbjct: 177 REAIKTWKTGSSSSLDVTTHTGL 199
Score = 42.7 bits (99), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 314 FREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
+ ++ + Q LV HN D +++ F+ LP + F ++ FP++ID YL
Sbjct: 307 YDRAVERLKTKQPVLVGHNMFTDIVYLYRTFVGQLPDTLQGFQATIHDLFPKIIDTKYL 365
>gi|302497187|ref|XP_003010594.1| CAF1 family ribonuclease, putative [Arthroderma benhamiae CBS
112371]
gi|291174137|gb|EFE29954.1| CAF1 family ribonuclease, putative [Arthroderma benhamiae CBS
112371]
Length = 573
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 90/393 (22%), Positives = 159/393 (40%), Gaps = 59/393 (15%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETA----YLKAKF 86
++T+ NF+ L + I F+A+ + +G F+ ST+ + + Y + K
Sbjct: 2 EVTRNNFSRLLPRMLQDIGDCSFVALDFEFSGIFNQKLRPASTYVDGDLSLQKRYEEVKQ 61
Query: 87 AAERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMA--- 143
AAE +QILQ + + YP+ +T +S+ A+A
Sbjct: 62 AAEEYQILQVGLTLVVEDSQNGWRYPF------------------YTLASSFSLALAFLM 103
Query: 144 KEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTV------F 197
GF + DG+ Y+S +E + M H K S +L +T+ F
Sbjct: 104 SHGFRVESIFTDGVPYISMKEEQ-------DAMDRAHKDKDKLSRSLINLNTLAPGHAQF 156
Query: 198 IERVRSRVKHW--KNACTDSDIKT-EAALVTSLRKIVLGGEQFGSR----------PS-M 243
I +VR ++ W K A D+ + + A +T+ K+ L + + R P +
Sbjct: 157 IRQVRHSIREWIEKPAPKDAYLNIPKPAGMTAAYKLPLELDNYQKRLVHQIVQSEYPGYV 216
Query: 244 TIDVCSERQVQLVLKMLED-FSDVLVPLI---IPAKGGGTQAVRAVLTS--SDEDKDLLK 297
+I S Q+ KM E+ F + I ++ G + + A++ S S D LL
Sbjct: 217 SIGKKSFIQILPYDKMRENVFLQKKLQRTRCNIASQKGFSWVIEALMGSDLSKLDLRLLW 276
Query: 298 RELQTFEFEQNKRVRGFREVIDLISASQKP-LVAHNSLNDFTFIHSKFLAPLPPNMNEFI 356
R F + ++ E + S P LV HN D + F+ LP + +F
Sbjct: 277 RPDGMFTAAEGSKLTKESEALREKLRSGPPVLVGHNLFTDLVNFYKCFIGDLPSRVEDFQ 336
Query: 357 CSLRLAFPQVIDVNYLLKDIGPVKKMTNISATI 389
++ FP VID Y+ G ++ ++ +T+
Sbjct: 337 QAINELFPLVIDTKYMATTGGVLRDASSALSTL 369
>gi|156085621|ref|XP_001610220.1| CAF1 family ribonuclease containing protein [Babesia bovis]
gi|154797472|gb|EDO06652.1| CAF1 family ribonuclease containing protein [Babesia bovis]
Length = 551
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 83/396 (20%), Positives = 144/396 (36%), Gaps = 68/396 (17%)
Query: 33 TKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAY--LKAKFAAER 90
++ ++ + + E + I SDF+A+ ++ TG + Y L + A
Sbjct: 7 SRLSWRDHVDEARRAIRESDFVALDVEYTG-----------LHLKDDRYVGLDKCYEAHA 55
Query: 91 FQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
QF C L A++ + + + P + + F TS L + FDF+
Sbjct: 56 SGAKQFIPCQVGLTAARYMGDNL-WSIHPMSVYTLPSSNKFFKVSTSTLQFLKDNNFDFH 114
Query: 151 TCIYDGISYLSEAQESTVKVRM-GNPMAVDHATKSS-----------SSPALSVADTVFI 198
+ I+ G+ +L+ ++ES +K + +DH + + +L D +
Sbjct: 115 SWIHHGVEHLTPSEESDLKFAIEQRKKELDHMLQQAPPDTAVKGVDFDLSSLGADDRLMA 174
Query: 199 ERVRSRVKHWKNACTDS--DIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLV 256
ER R++ W + T + +I+ E+A L ++ G+QF S + ER + +
Sbjct: 175 ERTIERIQTWISDGTSAPLEIEMESAFQRLLMHTII-GQQFPQVYSHSARRGDERVICVY 233
Query: 257 LKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFE--FEQNKRVRGF 314
+E L K +L T E E+ G
Sbjct: 234 KSQIE---------------------------------LYKEQLSTLETDIERINEQIGV 260
Query: 315 REVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLK 374
R + D I + K LV HN D ++ F LP + EF S F D Y
Sbjct: 261 RVLFDEIVNNGKILVGHNCFYDILHVYQTFYGELPEGVEEFRKSWTERFRNTFDTKY--- 317
Query: 375 DIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQANE 410
IG + A L+ F E N+A +
Sbjct: 318 -IGEFHESVAAPQHSATLRGLFDHMCSTESANKAGQ 352
>gi|403222320|dbj|BAM40452.1| uncharacterized protein TOT_020000708 [Theileria orientalis strain
Shintoku]
Length = 625
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 79/364 (21%), Positives = 135/364 (37%), Gaps = 59/364 (16%)
Query: 25 HHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKA 84
H++ +K N++ I I SDF+A+ ++ TG + F E Y
Sbjct: 75 HNFTTNVTSKLNWDNHCQLIVELIKESDFVALDVEYTGLHI----KDERFIGVEKCYESH 130
Query: 85 KFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
A++F Q + + + P + P D +F+ S L +
Sbjct: 131 VSGAKKFIPCQIGLTMARFEGGTWKVTPTSIFTIPSD-------GNTFSVNMSTLNFLKD 183
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRMGNPMA-VDHATKSSS-------------SPAL 190
FDFN+ I GI +L +E K + + +A +D T+ + +
Sbjct: 184 NNFDFNSWIRHGICHLKPKEEEERKSLILSKLAHIDELTRGINKEDEEFKVNEYDLTNIQ 243
Query: 191 SVADTVFIERVRSRVKHWKNACTDS--DIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVC 248
+ D +E V RV+ W + + + E+A + L V+ + P++ + C
Sbjct: 244 DLEDRKTVEEVVKRVEGWLFSQDKKPLEFEVESAFLRLLIHSVISIK----FPNIYSNSC 299
Query: 249 SERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQN 308
+ +LV ++ R +L S D+ L EL E
Sbjct: 300 KKDDRKLVRVY--------------------KSQRELLES---DRATLLSELSEIE---- 332
Query: 309 KRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVID 368
R G R + D IS+ +K LV HN D ++ F LP + F FP+V D
Sbjct: 333 -REVGLRTLFDTISSHKKILVGHNCFYDILHVYQTFYGDLPDTVESFKAEWLKVFPKVFD 391
Query: 369 VNYL 372
Y+
Sbjct: 392 TKYI 395
>gi|340055314|emb|CCC49627.1| putative ribonuclease, fragment, partial [Trypanosoma vivax Y486]
Length = 166
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
Q+T+ NF + + + DF A+ + TG + S DTPE Y + AA R
Sbjct: 2 QVTRDNFPAVFPKFVELLQTCDFYAIDEEMTG-INVADKPESITDTPEETYRAKREAASR 60
Query: 91 FQILQFAICPF---------KLQASKVIAYPYNFHLFPRDELKM---GMPSYSFTCQTSY 138
+ I+Q IC F + + A P+NF LFP M G+ S S
Sbjct: 61 YSIIQVGICLFHKDDDTNCGSAKKASYTARPFNFILFPTHVEGMTNTGL-SQDVVLSASS 119
Query: 139 LTAMAKEGFDFNTCIYDGISYLSEAQESTVK 169
L + + G DF + +Y G++Y + A E+ ++
Sbjct: 120 LAFLRRHGMDFQSWVYRGLAYCNAAGETVLR 150
>gi|401421012|ref|XP_003874995.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322491231|emb|CBZ26497.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 510
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 73/348 (20%), Positives = 133/348 (38%), Gaps = 70/348 (20%)
Query: 35 TNFNE--SLSEIKNHISSSDFIAVSLQNTG--------SFSSPWHRVSTFDTPETAYLKA 84
T FN+ +L + + +F A+ + TG SF +P PET Y
Sbjct: 4 TRFNQLVALPDFAREVERCEFCAIDQEMTGVDVTGVSTSFGAP---------PETVYHAK 54
Query: 85 KFAAERFQILQFAICPF-KLQASKVIAYPYNFHLF-PRDELKMGMPSYSFTCQTSYLTAM 142
+ A E + Q I F K + + PYNF+L +L++ + SF +
Sbjct: 55 RAAVEAYNAFQMGIALFTKTENNTYEVRPYNFYLLNGSGDLRLNLSVVSF---------L 105
Query: 143 AKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVR 202
A +F + G+ + +E +E+T + ++ P DH + + ++ D
Sbjct: 106 AANHLNFQAWLTSGLPFCNEQEEATYEEKLITPF-TDHTEQQMADSLINAID-------- 156
Query: 203 SRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLED 262
W + G E ID+ R++Q LE
Sbjct: 157 ----EW---------------------MPTGSEALLKELPCVIDLA--RRLQ---SFLER 186
Query: 263 FSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR-GFREVIDLI 321
D + + K Q ++ L D ++ + ++E + + E+++ GFR+ ++
Sbjct: 187 RYDSRITVNYDGKPYLGQKMKFTLKKLDTNEWISEKEKRRLQCERDRAQHLGFRQFWKIL 246
Query: 322 SASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDV 369
S+KP+V HN + D F+ PL + EF L+ P + D
Sbjct: 247 VQSRKPIVGHNFMQDVMFMVHMHETPLSQDYLEFKKVLQRTLPSIYDT 294
>gi|296816132|ref|XP_002848403.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
gi|238841428|gb|EEQ31090.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
Length = 545
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 100/451 (22%), Positives = 177/451 (39%), Gaps = 91/451 (20%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETA----YLKAKF 86
++TK NF + L +I I F+A+ + +G F+ S++ + + Y + K
Sbjct: 2 EVTKRNFTQLLPQILQAIGDCSFVALDFEFSGIFNQKLRPASSYADGDLSLQKRYEEVKQ 61
Query: 87 AAERFQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
AAE +QILQ I + + PYN L P + ++ + ++ Q S
Sbjct: 62 AAEEYQILQVGITLVTEDSENGTYLLRPYNIPLSPLLDPRLEV-ERKWSFQNS------- 113
Query: 145 EGFDFNTCIYDGISYLS--EAQESTVKVRMGN----PMAVDHATKSSSSPALSVADTVFI 198
DG+ Y+S E +++ V+VR N P+ +D L+ F+
Sbjct: 114 ----------DGVPYISRKEEEDAMVRVRQHNSAISPINLD---------TLAADQAEFL 154
Query: 199 ERVRSRVKHW--KNACTDSDIKT-EAALVTSLRKIVLGGEQFGSR----------PSMT- 244
+VR VK W K+ D + + A +T K+ L + + R P
Sbjct: 155 RQVRQDVKEWIEKDGPKDGYLNIPKPAGMTDAHKLPLELDNYQKRLVHQIINSEYPGYVS 214
Query: 245 ---------IDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTS--SDEDK 293
I +ER+ ++ K L+ +V I ++ G + + A+ + D
Sbjct: 215 VGKKSFVQIIPYDAERENKVTEKKLQ-----IVRANITSQKGLSWVIEALTGGELARLDL 269
Query: 294 DLLKRELQTFEFEQN----KRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLP 349
LL R F + KR RE + A LV HN D + F+ LP
Sbjct: 270 RLLWRPDGMFTAAEGSMLTKRSEALREK---LRAGPPVLVGHNLFTDLVNFYKCFIGDLP 326
Query: 350 PNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQAN 409
+ +F ++ FP V+D Y+ G ++ + + ++ L A E+PN
Sbjct: 327 GRVEDFQQAIHELFPVVVDTKYMATHGGVLR---DAFSALSKLNETLGA---REVPNFET 380
Query: 410 ENEGKIH---------GHNVVKICQLFGKLC 431
++E + G++ + Q+F KL
Sbjct: 381 DSEHSAYIANAPQHEAGYDSLITAQVFLKLA 411
>gi|344240241|gb|EGV96344.1| Poly(A)-specific ribonuclease PARN [Cricetulus griseus]
Length = 367
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 91 FQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +GFD
Sbjct: 3 FLLFQFGLCAFKYDHTDSKYITKSFNFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQGFD 61
Query: 149 FNTCIYDGISYLSEAQESTVK 169
FN GI YL++ +E ++
Sbjct: 62 FNKVFCSGIPYLNQEEERHLR 82
>gi|315042243|ref|XP_003170498.1| hypothetical protein MGYG_07743 [Arthroderma gypseum CBS 118893]
gi|311345532|gb|EFR04735.1| hypothetical protein MGYG_07743 [Arthroderma gypseum CBS 118893]
Length = 563
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 20/189 (10%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETA----YLKAKF 86
++T+ NF L + I F+A+ + +G F+ S + + + Y + K
Sbjct: 2 EVTRNNFARLLPRMLQDIGDCSFVALDFEFSGIFNQKTRPASAYADGDLSLQKRYEEVKQ 61
Query: 87 AAERFQILQFAICPFKLQASKVIAY---PYNFHLFPRDELKMGMPSYSFTCQTSYLTAMA 143
AAE +QILQ + ++ S+ Y PYN L P + K+ + ++ Q+S + +
Sbjct: 62 AAEEYQILQVGLT-LVVEDSENGNYSLRPYNIPLSPVLDPKLEV-ERKWSFQSSAVAFLM 119
Query: 144 KEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSP----ALSVADTVFIE 199
GF + DG+ Y+S +E + M H KSS SP L+ FI
Sbjct: 120 SHGFRVESIFTDGVPYISMKEEQ-------DAMDRAHQDKSSISPINFDTLAADQAEFIR 172
Query: 200 RVRSRVKHW 208
+VR +K W
Sbjct: 173 QVRHDIKEW 181
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 63/151 (41%), Gaps = 9/151 (5%)
Query: 328 LVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISA 387
LV HN D + F+ LP + +F S+ FP VID YL G +++ ++ +
Sbjct: 322 LVGHNLFTDLVNFYKCFIGDLPRRVEDFQQSINELFPLVIDTKYLATAGGVLREASSALS 381
Query: 388 TIAY-LKNRFFAPIEMEIPNQANENEGKIH--GHNVVKICQLFGKLCSILKITPDAIESS 444
T+ L R E + A IH G++ + Q+F KL L T SS
Sbjct: 382 TLCENLGAREVPKFETHPDHSAYTVSTPIHEAGYDSLMTAQIFLKLAVQLYET----SSS 437
Query: 445 DDFLASAINRYAN--IFYSLPGSSQEPTNEE 473
+ L + NR A L EP+ E+
Sbjct: 438 REALLNRANRDAAEVDLMDLSTEPDEPSEEQ 468
>gi|344239263|gb|EGV95366.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Cricetulus griseus]
Length = 171
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 74/143 (51%), Gaps = 15/143 (10%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG--SFSSPWHRVSTFDTPETAYLKAKFAAERFQIL 94
F E+LS + + I+ +DF+++ +Q TG S SS ++S FD P Y+K + + ++F I
Sbjct: 8 FAETLSFLHDIINEADFVSLDIQFTGLCSNSSRPQQISLFDLPSEWYMKTRQSVQQFTIC 67
Query: 95 QFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNT 151
+ + F + +++K +A+ NF LFP G+ F+ Q S + + N
Sbjct: 68 RIGLSVFSSIEGESNKYVAHSCNFFLFPT---TFGILDSEFSFQASSVQFL-------NK 117
Query: 152 CIYDGISYLSEAQESTVKVRMGN 174
+GI Y++E QE + GN
Sbjct: 118 FFKNGIPYMNEEQEIKESILRGN 140
>gi|241565990|ref|XP_002402057.1| conserved hypothetical protein [Ixodes scapularis]
gi|215499948|gb|EEC09442.1| conserved hypothetical protein [Ixodes scapularis]
Length = 514
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 5/137 (3%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+ ++T +NF++ L EI+ I+ + F+AV + TG P S FD+ + Y K +
Sbjct: 1 MTEVTLSNFDDLLPEIEAAIAGAAFVAVDTEFTGLVREPAAAPSLFDSADARYQKLRQTV 60
Query: 89 ERFQILQFAICPFKLQASKVI--AYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
+ + Q +C F S+ + A Y +L PR G F+ Q S + + + G
Sbjct: 61 SSYIVCQLGLCTFTSVPSENLYKASAYTIYLCPR---SFGSTDPQFSVQASSIEFLCRNG 117
Query: 147 FDFNTCIYDGISYLSEA 163
FDFN C Y+G+ Y A
Sbjct: 118 FDFNKCFYEGLPYADRA 134
>gi|357504869|ref|XP_003622723.1| CCP [Medicago truncatula]
gi|355497738|gb|AES78941.1| CCP [Medicago truncatula]
Length = 124
Score = 57.8 bits (138), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 43/68 (63%)
Query: 555 LREMVSDGLKAAGYETYQRVCSSGLWESALADALDKTLASHNCLSEAAYETKQSEIYLSN 614
L+E+ SDGL+ GYETY+ +C GLWE LA++L+KTL +E E K + ++
Sbjct: 57 LKELASDGLRVTGYETYRTMCRLGLWEVDLAESLEKTLECSLNDTEIHSERKPDIQWCND 116
Query: 615 ELINLAEL 622
+INL +L
Sbjct: 117 NVINLDDL 124
>gi|389603471|ref|XP_001569280.2| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505865|emb|CAM44421.2| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 510
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 74/349 (21%), Positives = 132/349 (37%), Gaps = 70/349 (20%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTG--------SFSSPWHRVSTFDTPETAYLK 83
IT+ N +L + + +F A+ + TG F +P PE Y
Sbjct: 3 ITRFNQIVALPDFAREVERCEFCAIDQEMTGVDVPGIPTQFGAP---------PEAVYHA 53
Query: 84 AKFAAERFQILQFAICPFKLQASKVI-AYPYNFHLF-PRDELKMGMPSYSFTCQTSYLTA 141
+ A E + Q I F+ + V PYNF+L +L++ +P+ SF
Sbjct: 54 KRIAVETYNAFQIGIALFRKTENNVYEVRPYNFYLLNDSGDLRLALPAVSF--------- 104
Query: 142 MAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERV 201
+A +F + G+ + + +E +D+ + + T+F + V
Sbjct: 105 LAANHMNFQMWLTAGLPFCNAQEE------------LDYEKQIT---------TLFTDEV 143
Query: 202 RSRVKHWKNACTDSDIKTEAA-LVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKML 260
+ + D I T +A LV L CS Q + L
Sbjct: 144 EHEISNDLVKAIDEWIPTASAPLVKELS-------------------CSLNLAQRLQAFL 184
Query: 261 EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK-RVRGFREVID 319
D + + K Q ++ LT + + + ++E + E+++ R GFR+
Sbjct: 185 SHRYDSRIVINYDGKPYLAQKIKFTLTKLSKAEWISEKEKRRLRCERDRARQLGFRQFWK 244
Query: 320 LISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVID 368
++ S+KP+V HN + D F+ PLP + EF L+ P + D
Sbjct: 245 ILLKSRKPIVGHNFMQDIMFMIHMHETPLPVDYLEFKKLLQRTLPTIYD 293
>gi|154290929|ref|XP_001546053.1| hypothetical protein BC1G_15528 [Botryotinia fuckeliana B05.10]
Length = 406
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 80/192 (41%), Gaps = 13/192 (6%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWH----RVSTFDTP--ETAYLKA 84
++ K N+ L I I+++ F++ L+ +G + P H R P + Y +
Sbjct: 2 EVHKENWQRLLLPILKDIANATFVSFDLEMSGITTRPKHTSQERTHDIGKPSLQQQYEEV 61
Query: 85 KFAAERFQILQFAICPFKLQASK--VIAYPYNFHLFP---RDELKMGMPSYSFTCQTSYL 139
K AAE FQ+LQ I + K +A PYN +L P D + +SF+ +S
Sbjct: 62 KEAAETFQVLQLGITCVEEDREKEYYLAKPYNINLSPLLLYDRVFDLDRKFSFS--SSAT 119
Query: 140 TAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIE 199
+ GFD G+ YLSE +E + R + + A S V F
Sbjct: 120 NFLQSNGFDIGAVFTMGVPYLSEQEEVEARERYDQRIERNAAIPSIVFDPSDVGTLEFYR 179
Query: 200 RVRSRVKHWKNA 211
R RS + W A
Sbjct: 180 RARSSITEWIEA 191
Score = 42.0 bits (97), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 316 EVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
+VI + Q +V HN D F++ F+ LP + +F + FP VID YL
Sbjct: 323 KVIKKLKEKQHVIVGHNLFTDLCFLYKTFIGDLPAGVGDFQSQIHSLFPFVIDTKYL 379
>gi|281200346|gb|EFA74567.1| hypothetical protein PPL_00067 [Polysphondylium pallidum PN500]
Length = 525
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 315 REVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
R +IDL+S Q+PLV HN D F+ F+ LP +N FI L FP++ D +L
Sbjct: 232 RRIIDLLSKHQQPLVIHNGFYDLLFLFQSFIDDLPDQLNVFIAKLTKVFPKIYDTKFL 289
>gi|350631915|gb|EHA20284.1| hypothetical protein ASPNIDRAFT_121560 [Aspergillus niger ATCC
1015]
Length = 559
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 90/412 (21%), Positives = 164/412 (39%), Gaps = 74/412 (17%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
I+ F L + + ++S F+++ + +G + T + Y + K +A+++
Sbjct: 3 ISAQTFFYHLPRVLDDLASCCFVSIDFEFSGIAKGLGPSAKSRSTLQERYEEVKNSADQY 62
Query: 92 QILQ--FAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
QILQ IC + + PYN +L P + K+ + + + Q+S + + + F
Sbjct: 63 QILQVGLTICHEDPETATYTLKPYNLYLSPIIDRKLDL-DRNCSFQSSAVEFLLENKFSM 121
Query: 150 NTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVAD-----TVFIERVRSR 204
+G++YLS +ES + R+ M + T + SS L V D F++ VR
Sbjct: 122 EDLYKNGVTYLSRDEESRIMARV---MQRNERTTARSS--LDVGDHEYESLAFLKDVRRL 176
Query: 205 VKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFS 264
V W E L + + G SM D+ + Q +LV +++E
Sbjct: 177 VDEWLALGK----AREDYLNIPPPRPITGPAPSNHPKSMPTDL-NRFQKRLVHQLIE--- 228
Query: 265 DVLVP-LIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREV---- 317
V P L+ ++ G Q + DE ++ R+ Q ++ Q + + GFR +
Sbjct: 229 -VEYPSLVTVSRPGFIQII-----DYDEQREKAVRD-QRVKWVQERIWKQTGFRWIAEAL 281
Query: 318 -------------IDLISASQ---------------------KP-LVAHNSLNDFTFIHS 342
I+L+S+S+ +P LV HN D +
Sbjct: 282 AGGDLTNLEPFCFINLMSSSKENPQSSLQDFSRGVKQRLQKNRPVLVGHNLFTDLIYFCR 341
Query: 343 KFLAPLPPNMNEFICSLRLAFPQVIDVNYLLK----DIGPVKKMTNISATIA 390
F PLP + +F FP ++D Y+ I P + I+ ++A
Sbjct: 342 CFFGPLPDRVEDFQAMAHEMFPVLMDTKYMATHNCGSINPRSSLQEINDSLA 393
>gi|403366643|gb|EJY83125.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Oxytricha trifallax]
Length = 554
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 17/111 (15%)
Query: 274 AKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR-------GFREVIDLISASQK 326
AK G +V + SD+D FE + N+ V GF +V++ + ++K
Sbjct: 191 AKKNGKSSVNSKYQMSDKD----------FEMQNNQEVIDITEYEIGFSKVVEEMINAKK 240
Query: 327 PLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIG 377
PLV HN + D F++ +F+ LP + EFI + FP + D + +++G
Sbjct: 241 PLVGHNMMLDIMFLYQQFIDDLPLTLREFIVKFQEKFPAIYDTKAISQNMG 291
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 6/132 (4%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
+IT NF E I I S +FIA + +GS + FD+ + Y K + A ++
Sbjct: 2 EITVENFEEKFDLIAKSIRSCEFIAFDTEFSGSKIGYEDKPHEFDSLDDKYRKNRSAVQK 61
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F Q I F K I P+NF ++PR L+ + + + + FD
Sbjct: 62 FLAFQVGITTFMWSNMKKKYIGRPFNFLVYPRHILQERYHH----ANSDTIDFLKRYSFD 117
Query: 149 FNTCIYDGISYL 160
FN G++ L
Sbjct: 118 FNKVFRYGLTTL 129
>gi|300120079|emb|CBK19633.2| unnamed protein product [Blastocystis hominis]
Length = 567
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 134/343 (39%), Gaps = 39/343 (11%)
Query: 22 QNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAY 81
Q P + IT NF E L + I S+FIA L+ +G+ P+ R DT ET Y
Sbjct: 2 QTPKIEEVIDITVNNFEECLPYVLETIRKSEFIAFDLEFSGTDYKPYFRCVYADTFETRY 61
Query: 82 LKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFT-CQTSY-- 138
K + AE + ++ IC F K + Y+ R + + ++S +TSY
Sbjct: 62 AKYRVDAENYYPIELGICCFYWDDEK---HWYSSVFALRIVSYVALSTFSSAPMRTSYAS 118
Query: 139 -LTAMAKEGFDFNTCIYDGISYLSEAQESTV--KVRMGNPM--AVDHATKSSSSPALSVA 193
L + F F +GI L ++ E + +RM D + S P
Sbjct: 119 TLDFLRNNHFKFGRLFSEGIPTLRKSDEEKILEHLRMSQDRYDYKDDKERESMEPIFEQI 178
Query: 194 DTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQV 253
++ +I+ + + N TD + TE+ L+ L + + S R
Sbjct: 179 NS-WIQAMNRDAQLSPN--TDHSLATESLLLPPLN---------SHKRKLLYQEVSNRYP 226
Query: 254 QLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRG 313
L LK L P P+ G + R +T + + E E Q+ G
Sbjct: 227 TLSLKEL--------PEDNPS-TGKIKRTRIFVTKQPSE----RIEPAVPEVCQHA---G 270
Query: 314 FREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFI 356
R V++ I S+KPLV ++ D ++ LP + EF+
Sbjct: 271 VRRVVEAILESKKPLVGFQTMGDVMYMLGGIYKELPRTLPEFL 313
>gi|317038388|ref|XP_001402264.2| CAF1 family ribonuclease [Aspergillus niger CBS 513.88]
Length = 559
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 90/412 (21%), Positives = 164/412 (39%), Gaps = 74/412 (17%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
I+ F L + + ++S F+++ + +G + T + Y + K +A+++
Sbjct: 3 ISAQTFFYHLPRVLDDLASCCFVSIDFEFSGIAKGLGPSAKSRSTLQERYEEVKNSADQY 62
Query: 92 QILQ--FAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
QILQ IC + + PYN +L P + K+ + + + Q+S + + + F
Sbjct: 63 QILQVGLTICHEDPETATYTLKPYNLYLSPIIDRKLDL-DRNCSFQSSAVEFLLENKFSM 121
Query: 150 NTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVAD-----TVFIERVRSR 204
+G++YLS +ES + R+ M + T + SS L V D F++ VR
Sbjct: 122 EDLYKNGVTYLSRDEESRIMARV---MQRNERTTARSS--LDVGDHEYESLAFLKDVRRL 176
Query: 205 VKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFS 264
V W E L + + G SM D+ + Q +LV +++E
Sbjct: 177 VDEWLALGK----AREDYLNIPPPRPITGPAPSNHPKSMPTDL-NRFQKRLVHQLIE--- 228
Query: 265 DVLVP-LIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREV---- 317
V P L+ ++ G Q + DE ++ R+ Q ++ Q + + GFR +
Sbjct: 229 -VEYPSLVTVSRPGFIQII-----DYDEQREKAVRD-QRVKWVQERIWKQTGFRWIAEAL 281
Query: 318 -------------IDLISASQ---------------------KP-LVAHNSLNDFTFIHS 342
I+L+S+S+ +P LV HN D +
Sbjct: 282 AGGDLTNLEPFCFINLMSSSKENPQSSLQDFSRGVKQRLQKNRPVLVGHNLFTDLIYFCR 341
Query: 343 KFLAPLPPNMNEFICSLRLAFPQVIDVNYLLK----DIGPVKKMTNISATIA 390
F PLP + +F FP ++D Y+ I P + I+ ++A
Sbjct: 342 CFFGPLPDRVEDFQAMAHEMFPVLMDTKYMATHNCGSINPRSSLQEINDSLA 393
>gi|134074883|emb|CAK38993.1| unnamed protein product [Aspergillus niger]
Length = 480
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 90/412 (21%), Positives = 164/412 (39%), Gaps = 74/412 (17%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
I+ F L + + ++S F+++ + +G + T + Y + K +A+++
Sbjct: 3 ISAQTFFYHLPRVLDDLASCCFVSIDFEFSGIAKGLGPSAKSRSTLQERYEEVKNSADQY 62
Query: 92 QILQ--FAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
QILQ IC + + PYN +L P + K+ + + + Q+S + + + F
Sbjct: 63 QILQVGLTICHEDPETATYTLKPYNLYLSPIIDRKLDL-DRNCSFQSSAVEFLLENKFSM 121
Query: 150 NTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVAD-----TVFIERVRSR 204
+G++YLS +ES + R+ M + T + SS L V D F++ VR
Sbjct: 122 EDLYKNGVTYLSRDEESRIMARV---MQRNERTTARSS--LDVGDHEYESLAFLKDVRRL 176
Query: 205 VKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFS 264
V W E L + + G SM D+ + Q +LV +++E
Sbjct: 177 VDEWLALGK----AREDYLNIPPPRPITGPAPSNHPKSMPTDL-NRFQKRLVHQLIE--- 228
Query: 265 DVLVP-LIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREV---- 317
V P L+ ++ G Q + DE ++ R+ Q ++ Q + + GFR +
Sbjct: 229 -VEYPSLVTVSRPGFIQII-----DYDEQREKAVRD-QRVKWVQERIWKQTGFRWIAEAL 281
Query: 318 -------------IDLISASQ---------------------KP-LVAHNSLNDFTFIHS 342
I+L+S+S+ +P LV HN D +
Sbjct: 282 AGGDLTNLEPFCFINLMSSSKENPQSSLQDFSRGVKQRLQKNRPVLVGHNLFTDLIYFCR 341
Query: 343 KFLAPLPPNMNEFICSLRLAFPQVIDVNYLLK----DIGPVKKMTNISATIA 390
F PLP + +F FP ++D Y+ I P + I+ ++A
Sbjct: 342 CFFGPLPDRVEDFQAMAHEMFPVLMDTKYMATHNCGSINPRSSLQEINDSLA 393
>gi|157877855|ref|XP_001687225.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68130300|emb|CAJ09612.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 510
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 69/345 (20%), Positives = 138/345 (40%), Gaps = 64/345 (18%)
Query: 35 TNFNE--SLSEIKNHISSSDFIAVSLQNTG----SFSSPWHRVSTFDTPETAYLKAKFAA 88
T FN+ +L++ + +F A+ + TG S+P+ PE Y + A
Sbjct: 4 TRFNQLVALADFAREVERCEFCAIDQEMTGVDVTGVSAPFGA-----PPEAVYHAKRAAV 58
Query: 89 ERFQILQFAICPF-KLQASKVIAYPYNFHLF-PRDELKMGMPSYSFTCQTSYLTAMAKEG 146
E + Q I F K + + PYNF+L +L++ + SF +A
Sbjct: 59 EVYNAFQMGIALFTKTENNTYEVRPYNFYLLNDSGDLRLNLSVVSF---------LAANH 109
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
F T + G+ + + +E+ + ++ + DHA + ++ + D
Sbjct: 110 LSFQTWLTSGLRFCNAKEEAAYEEKL-KTLFTDHAEQQIANALIEAVD------------ 156
Query: 207 HWKNACTDSDIKTEAALVTSLRKI-VLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 265
W + +K ++ R++ ++ SR +T+D +
Sbjct: 157 EWMPTGSGPLVKELPCMIDLARRLQSFLDHRYDSR--ITVDYDGK--------------- 199
Query: 266 VLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR-GFREVIDLISAS 324
P G Q ++ LT D ++ + ++E + + E+++ + GFR+ ++ S
Sbjct: 200 -------PYLG---QKIKFTLTRLDANEWISEKEKKRLQCERDRAEQLGFRQFWKILLQS 249
Query: 325 QKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDV 369
+KP+V HN + D F+ AP+ + EF L+ P + D
Sbjct: 250 RKPIVGHNFMQDIMFMVHMHEAPISHDYVEFKKVLQRTLPTIYDT 294
>gi|237837885|ref|XP_002368240.1| poly(A)-specific ribonuclease, putative [Toxoplasma gondii ME49]
gi|211965904|gb|EEB01100.1| poly(A)-specific ribonuclease, putative [Toxoplasma gondii ME49]
gi|221508992|gb|EEE34561.1| CAF1 ribonuclease family protein [Toxoplasma gondii VEG]
Length = 1022
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/378 (20%), Positives = 159/378 (42%), Gaps = 41/378 (10%)
Query: 41 LSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICP 100
L ++ ++ ++F+A+ ++ TG + F + Y A+ F +Q +C
Sbjct: 322 LEALREVLAKAEFVALDVELTGLHM----KNEKFLGVDRCYEAHCEGAKNFLPVQLGLCA 377
Query: 101 FKLQAS----KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDG 156
+ ++ K I P + ++FPRD + F T L + + GFDFN + G
Sbjct: 378 ARRASAAEPHKWILTPASVYMFPRD-------ARLFQASTGTLMFLRENGFDFNKWLDQG 430
Query: 157 ISYLSEAQE----STVKVRMGN-PMAVDHATKSSSSPALS---VADTVFIER----VRSR 204
I +L +E ++VR+ + + H ++S++ S +D V +E +R
Sbjct: 431 IPFLRAQEEKEKRQALQVRIDDLEHLIKHRSRSATLRGASYNQTSDNVLVENHIFYASAR 490
Query: 205 V------KHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPS-MTIDVCSERQVQLVL 257
V K +++ KTE + + + + S P + + V S Q L+
Sbjct: 491 VAYETPEKSQESSSLLDTSKTEDRELAASARAAIHAWLASSSPEPLHLPVESPLQRLLLH 550
Query: 258 KMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREV 317
++ L L + G + V A+ S +E + R L+ + + + +RG R++
Sbjct: 551 SLVAAEFPSLYSLSVKV---GDRRVLAIYQSEEEVYEEQLRGLRE-DIHRVEELRGVRQL 606
Query: 318 IDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKD-- 375
+D +S + +V HN DF I A LP +++EF + FP D + +
Sbjct: 607 LDDVSDQKLLVVGHNCFYDFLHIFQTLYADLPQSVSEFKTTWTQLFPATFDTKLIAESHD 666
Query: 376 -IGPVKKMTNISATIAYL 392
+ P++ + +++
Sbjct: 667 ALAPLQSPATLQGLCSFM 684
>gi|121717008|ref|XP_001275977.1| CAF1 family ribonuclease, putative [Aspergillus clavatus NRRL 1]
gi|119404134|gb|EAW14551.1| CAF1 family ribonuclease, putative [Aspergillus clavatus NRRL 1]
Length = 578
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 90/453 (19%), Positives = 180/453 (39%), Gaps = 70/453 (15%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
+T +F L I + +++ F+++ + +G ++ S T + Y + K +AE++
Sbjct: 3 VTAQSFAYHLPRILDELATCCFVSMDFEFSGIATASSAPSSGSQTLQERYEEVKRSAEKY 62
Query: 92 QILQ--FAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
QILQ IC + PYN L P + ++ + + Q+ + + + F
Sbjct: 63 QILQVGLTICHEDTGKATYTLKPYNICLSPIIDKRLEL-ERDWMMQSGAVEFLLENKFSM 121
Query: 150 NTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADT-----VFIERVRSR 204
+ +G+ YLS +E + A++ + ++ + V +T F++ R
Sbjct: 122 DAVFKNGVCYLSREEEELAMAK-----AIERRDRVATHTLIDVKETELESLAFLQAARRL 176
Query: 205 VKHWKNACTDSDI------KTEAALVTSLRKIVLGGEQFGSR----------PSMT---- 244
V W T D T + S + + +F R PS+
Sbjct: 177 VDDWLAIRTTRDSYLNIPPPTRIGHLQSSKSLPSTLNRFQKRLVHQLIEVEYPSLVTISN 236
Query: 245 ------IDVCSERQVQLVLKMLEDFSDVL-----VPLIIPAKGGG------TQAVRAVLT 287
ID ER+ L + L + + I A GG T +++
Sbjct: 237 PGFIQIIDYDEERERSLREQRLNRVQERIWKQTGFRWIAEALAGGDLSNLDTSFFIGIMS 296
Query: 288 SSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAP 347
+S K + L+ F + +R++ R P++ HN +D + + F P
Sbjct: 297 NSAAVKPIYS--LREFSEKLRERLQEHR-----------PVLGHNIFSDLIYFYRCFFGP 343
Query: 348 LPPNMNEFICSLRLAFPQVIDVNYL-LKDIGPVKKMTNISATIAYLKNRFFAPIEMEIPN 406
LP + +F ++ FP ++D Y+ + G + +++ L R A ++EI +
Sbjct: 344 LPDKVEDFQSTMHELFPVLMDTKYMATHNCGSINPRSSLPEINDSLSKR--ATPKIEIHS 401
Query: 407 QANE-NEGKIH---GHNVVKICQLFGKLCSILK 435
Q ++ N KI G++ + Q+F +L + L+
Sbjct: 402 QYSKYNTRKIEHEAGYDSLLSAQIFIRLSAQLR 434
>gi|71649930|ref|XP_813674.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70878580|gb|EAN91823.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 517
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/344 (20%), Positives = 124/344 (36%), Gaps = 62/344 (18%)
Query: 41 LSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICP 100
+ +N + DF AV + TG R PE Y + +R+ QF I
Sbjct: 12 FEDFQNSLEKCDFYAVDQEMTGVDFDGQQRSRFMSLPEL-YEACRGVVKRYIAFQFGITL 70
Query: 101 F-KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISY 159
F +L++ PYNF+L F T + + DF + G+ Y
Sbjct: 71 FTRLKSGGYEVKPYNFYLLKE--------HCDFGVNTDAIRFLVAHKLDFQKWLAFGVHY 122
Query: 160 LSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKT 219
++ +E ++ NP ++ K VF V + +K W D K
Sbjct: 123 CNKEEEGRFTMKKENPSCLELKEK-----------IVF--HVVNEIKKWY---LDPYKKE 166
Query: 220 EAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAK---- 275
E L SL+ ++ G + ++ + E+ + + L+ E +P+ +
Sbjct: 167 EEIL--SLKTVMTKGIE-----ALVMSTLKEQDIYVNLEYDEISKLYELPVELTVHRVDR 219
Query: 276 -----GGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVA 330
GG AV + S++ GFR++ ++ +KP++
Sbjct: 220 NKLDLEGGKTAVNSAGVFSEK--------------------LGFRQIWKCLTKCKKPIIG 259
Query: 331 HNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLK 374
HN D F+ APLP +F + FP + D L K
Sbjct: 260 HNFWLDIMFMLHMHEAPLPARYEDFKKQVHELFPCIYDTKTLSK 303
>gi|307203543|gb|EFN82576.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Harpegnathos saltator]
Length = 355
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/331 (20%), Positives = 133/331 (40%), Gaps = 57/331 (17%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+ +T NF E ++++ + ++ FIA+ + +G + S FD+ E Y K +
Sbjct: 1 MNDVTNNNFKEIYPQLEHTLKNATFIAIDSEFSG-IKDENIKTSLFDSIEERYDKNRNII 59
Query: 89 ERFQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYS--FTCQTSYLTAMAK 144
+ I+QF I F+ ++ A +NF + P+ +PS + S + +A+
Sbjct: 60 RPYIIVQFGITAFQRIHDENQYNAEIFNFFILPK-----SIPSKNRQVLWDVSSMEFLAE 114
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSR 204
FDFN + I Y+ E ++ ++ ++ + + + +S + ++ +
Sbjct: 115 HEFDFNKLAHHSIPYIDEQEKEILQQQIQQNTLIYNIKQ-----VISFTEEDTLKNTINE 169
Query: 205 VKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFS 264
V W T+ D + T S P++ + E +
Sbjct: 170 VAKW--LATNIDETNSFKIKT-------------SSPNLQYLMHKELRKHF--------- 205
Query: 265 DVLVPLIIPAKGGGTQAVRAV------LTSSDEDKDLLKRELQTFEFEQNKRVRGFREVI 318
P I G + V V + S +ED L L+++ GF +V
Sbjct: 206 ----PNIWTLSGNESVTVIKVEPNTREILSEEEDLILENALLESY--------MGFSKVF 253
Query: 319 DLISASQKPLVAHNSLNDFTFIHSKFLAPLP 349
+L+ +KP++ HN L D F++ +F PLP
Sbjct: 254 NLLVTLKKPIIGHNVLLDLMFMYQQFYKPLP 284
>gi|268556560|ref|XP_002636269.1| Hypothetical protein CBG08556 [Caenorhabditis briggsae]
Length = 564
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/345 (20%), Positives = 134/345 (38%), Gaps = 26/345 (7%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
I +NF E +++ + SDF+++ + G ++ +S DT E Y + ++
Sbjct: 4 IKDSNFLELAPQLRKTLLQSDFVSIDFEFLGLDTTA---ISLHDTAEKRYEILRANVIKY 60
Query: 92 QILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNT 151
+ Q + FK +++K Y + + P + + G S + + L + + FD N
Sbjct: 61 RPCQLGLSFFKQKSNK--GYKADSYSIPLCQ-RFGASDTSISVNS--LRFLLENNFDLNQ 115
Query: 152 CIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNA 211
I DG+ + + A+ + + A+ + +K + V + RVK
Sbjct: 116 VITDGVEFCTRAEIKKFEEALSKGTALSYISKDKQMKVEQLK--VMLHEKCFRVKAEMIT 173
Query: 212 CTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLI 271
T + + L+ + K V M +CS + + F +L L
Sbjct: 174 HTTEEPSQDCRLIINSDKPV--------SLKMPAGLCSVETYIAIHDITNSFPHLLFSLN 225
Query: 272 IPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAH 331
K + +T ++ K R ++FE G +++ +K +V H
Sbjct: 226 EKDKSLDVTMLPETMTETENKKQTRMRCTESFE--------GISAILEAAMMMRKVIVGH 277
Query: 332 NSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
NSL D +++ F + LP F FP+VID L + I
Sbjct: 278 NSLLDAMYMYHYFFSSLPLKYRNFKREFNSLFPKVIDTKILAQVI 322
>gi|401408295|ref|XP_003883596.1| hypothetical protein NCLIV_033510 [Neospora caninum Liverpool]
gi|325118013|emb|CBZ53564.1| hypothetical protein NCLIV_033510 [Neospora caninum Liverpool]
Length = 751
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/315 (21%), Positives = 125/315 (39%), Gaps = 33/315 (10%)
Query: 107 KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQE- 165
K I P + +L PR+ F T L + + GFDFN + G+ +L +E
Sbjct: 129 KWILTPASLYLLPRE-------GRLFQASTGTLMFLRENGFDFNQWLDQGVPFLRAQEEK 181
Query: 166 ---STVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEAA 222
++VR+ + ++H K S A R ++ D+ +
Sbjct: 182 EKRQALQVRIDD---LEHLIKHRSRGATM------------RDAQESSSLLDTTNAEDRD 226
Query: 223 LVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAV 282
L S R + +R + + V S Q L+ ++ L L + G + V
Sbjct: 227 LAASARASIQAWLASSTREPLHLPVESPLQRLLLHSLVASEFPSLYSLSVKL---GDRRV 283
Query: 283 RAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHS 342
A+ S +E + R L+ + ++ + +RG R+++D IS + ++ HN DF I
Sbjct: 284 LAIYQSEEEVYEEQLRGLRE-DIQKVEELRGVRQLLDDISDHKLLVIGHNCFYDFLHIFQ 342
Query: 343 KFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKD---IGPVKKMTNISATIAYLKNRFFAP 399
A LP +++EF + FP D + + + P++ + +++ A
Sbjct: 343 TLYADLPQSVSEFKTAWTQLFPSTFDTKLIAESHDVLAPLQPPATLQGLCSFMGALAAAT 402
Query: 400 IEMEIPNQANENEGK 414
E + E EG+
Sbjct: 403 QEPLSQAERGEREGR 417
>gi|71663249|ref|XP_818620.1| ribonuclease [Trypanosoma cruzi strain CL Brener]
gi|70883881|gb|EAN96769.1| ribonuclease, putative [Trypanosoma cruzi]
Length = 517
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 74/345 (21%), Positives = 128/345 (37%), Gaps = 46/345 (13%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
I K++ + +N + DF AV + TG R PE Y + +R+
Sbjct: 3 IDKSSLFFIFEDFQNSLEKCDFYAVDQEMTGVDFDGQQRSRFMSLPE-LYEACRGVVKRY 61
Query: 92 QILQFAICPF-KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
QF I F +L++ + PYNF+L F T + + DF
Sbjct: 62 IAFQFGITLFTRLKSGGYVVKPYNFYLLKE--------HCDFGVNTDAIKFLVAHKLDFQ 113
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ G+ Y ++ +E + NP ++ K VF V + +K W
Sbjct: 114 KWLAFGVHYCNKEEEGRFTTKKENPSYLELEEK-----------IVF--HVVNEIKKWY- 159
Query: 211 ACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPL 270
D K E L SL+ ++ G + + I E+ + + L ++ ++
Sbjct: 160 --LDPYKKEEEIL--SLKTVMTKGIE-----AFVISTLKEQDIYVNL----EYDEISKLY 206
Query: 271 IIPAKGGGTQAVRAVLTSSDEDK-DLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLV 329
+P V+ + D +K DL + GFR++ ++ +KP++
Sbjct: 207 ELP--------VQLTVHRVDRNKLDLEGEKTAVNSASVFSEKLGFRQIWKCLTKCKKPII 258
Query: 330 AHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLK 374
HN D F+ APLP +F + FP + D L K
Sbjct: 259 GHNFWLDIMFMLHMHEAPLPTMYEDFKKQVHELFPCIYDTKTLSK 303
>gi|429327871|gb|AFZ79631.1| hypothetical protein BEWA_024800 [Babesia equi]
Length = 582
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 77/349 (22%), Positives = 134/349 (38%), Gaps = 42/349 (12%)
Query: 33 TKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQ 92
+K + E + I I ++DFIA ++ TG V + Y A++F
Sbjct: 30 SKLTWEEHRNIIIEAIKNADFIAFDMEYTGLHLKDDRYVGI----DKCYEAHSAGAKQFI 85
Query: 93 ILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTC 152
Q + KL+ P + + FP D + F TS ++ + FDFN+
Sbjct: 86 PCQIGLTMAKLENGVWNITPTSIYTFPSD-------NTVFKVNTSTISFLKDNNFDFNSW 138
Query: 153 IYDGISYLSEAQES----TVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
I +G+ +L +E ++ R+ + +KS++ SV F
Sbjct: 139 IRNGVLHLKPHEEQEKKKVIEERLKELQQMLEMSKSNTKSKPSVKPVKF----------- 187
Query: 209 KNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLV 268
N T D ++ + KI E S +++ E Q +L +
Sbjct: 188 -NMSTIPDENDRNTAISVMNKI---EEWIDSDDIKPLEIPMESAFQRLL--MHTIIGQQY 241
Query: 269 PLIIP--AKGGGTQAV---RAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISA 323
P I + G +A+ ++ +E LK E+ + + E G R ++D ISA
Sbjct: 242 PQIFSHSTRRGNDKALCIYKSEYELYNEQILQLKSEMASVDEEV-----GLRLLLDAISA 296
Query: 324 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
++K +V HN D I+ F LP ++ EF + P D Y+
Sbjct: 297 NKKIIVGHNCFYDILHIYQTFYKDLPESVQEFKDAWISKHPHTFDTKYI 345
>gi|221488487|gb|EEE26701.1| CAF1 ribonuclease family protein [Toxoplasma gondii GT1]
Length = 1022
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 77/378 (20%), Positives = 157/378 (41%), Gaps = 41/378 (10%)
Query: 41 LSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICP 100
L ++ ++ ++F+A+ ++ TG + F + Y A+ F +Q +C
Sbjct: 322 LEALREVLAKAEFVALDVELTGLHM----KNEKFLGVDRCYEAHCEGAKNFLPVQLGLCA 377
Query: 101 FKLQAS----KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDG 156
+ ++ K I P + ++FPRD + F T L + + GFDFN + G
Sbjct: 378 ARRASAAEPHKWILTPASVYMFPRD-------ARLFQASTGTLMFLRENGFDFNKWLDQG 430
Query: 157 ISYLSEAQE----STVKVRMGN-PMAVDHATKSSSSPALS---------VADTVFIERVR 202
I +L +E ++VR+ + + H ++S++ S V + +F R
Sbjct: 431 IPFLRAQEEKEKRQALQVRIDDLEHLIKHRSRSATLRGASYNQTSYNVLVENHIFYASAR 490
Query: 203 SRVKHWKNACTDSDI----KTEAALVTSLRKIVLGGEQFGSRPS-MTIDVCSERQVQLVL 257
+ + + S + KTE + + + + S P + + V S Q L+
Sbjct: 491 VAYETPEKSQESSSLLDTSKTEDRELAASARAAIHAWLASSSPEPLHLPVESPLQRLLLH 550
Query: 258 KMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREV 317
++ L L + G + V A+ S +E + R L+ + + + +RG R++
Sbjct: 551 SLVAAEFPSLYSLSVKV---GDRRVLAIYQSEEEVYEEQLRGLRE-DIHRVEELRGVRQL 606
Query: 318 IDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKD-- 375
+D +S + +V HN DF I A LP +++EF + FP D + +
Sbjct: 607 LDDVSDQKLLVVGHNCFYDFLHIFQTLYADLPQSVSEFKTTWTQLFPATFDTKLIAESHD 666
Query: 376 -IGPVKKMTNISATIAYL 392
+ P++ + +++
Sbjct: 667 ALAPLQSPATLQGLCSFM 684
>gi|398025226|ref|XP_003865774.1| hypothetical protein, conserved [Leishmania donovani]
gi|322504011|emb|CBZ39098.1| hypothetical protein, conserved [Leishmania donovani]
Length = 510
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 71/345 (20%), Positives = 131/345 (37%), Gaps = 60/345 (17%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTG----SFSSPWHRVSTFDTPETAYLKAKFA 87
IT+ N +L + + +F A+ + TG S+P+ PE Y + A
Sbjct: 3 ITRFNQLVALPDFAREVERCEFCAIDQEMTGVDVTGVSAPFGA-----PPEAVYHAKRAA 57
Query: 88 AERFQILQFAICPF-KLQASKVIAYPYNFHLF-PRDELKMGMPSYSFTCQTSYLTAMAKE 145
+ Q I F K + + PYNF+L +L++ + SF +A
Sbjct: 58 VVVYNAFQMGIALFTKTENNTYEVRPYNFYLLNDSGDLRLNLSVVSF---------LAAN 108
Query: 146 GFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRV 205
+F T + G+ + +E +E+ + ++ P DHA + +AD + +
Sbjct: 109 HLNFQTWLTSGLPFCNEQEEAAYEEKLQMPF-TDHAEQQ-------IADALI-----EAI 155
Query: 206 KHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 265
W A G E ID+ Q L + D
Sbjct: 156 DEWMPA---------------------GNEPLVRELPCVIDLARRLQSFLYRRY-----D 189
Query: 266 VLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR-GFREVIDLISAS 324
+ + K Q ++ LT D ++ + ++E + + E+++ + GFR ++ S
Sbjct: 190 SRIAVNYDGKPYLGQKIKFTLTKLDTNEWISEKEKRRLQCERDRGQQLGFRLFWKILVQS 249
Query: 325 QKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDV 369
+KP+V HN + D F+ P+ + EF L+ P + D
Sbjct: 250 RKPIVGHNFMQDVMFMIHMHETPISQDYLEFKKVLQRTLPSIYDT 294
>gi|146102538|ref|XP_001469360.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134073730|emb|CAM72467.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 510
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 71/345 (20%), Positives = 131/345 (37%), Gaps = 60/345 (17%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTG----SFSSPWHRVSTFDTPETAYLKAKFA 87
IT+ N +L + + +F A+ + TG S+P+ PE Y + A
Sbjct: 3 ITRFNQLVALPDFAREVERCEFCAIDQEMTGVDVTGVSAPFGA-----PPEAVYHAKRAA 57
Query: 88 AERFQILQFAICPF-KLQASKVIAYPYNFHLF-PRDELKMGMPSYSFTCQTSYLTAMAKE 145
+ Q I F K + + PYNF+L +L++ + SF +A
Sbjct: 58 VVVYNAFQMGIALFTKTENNTYEVRPYNFYLLNDSGDLRLNLSVVSF---------LAAN 108
Query: 146 GFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRV 205
+F T + G+ + +E +E+ + ++ P DHA + +AD + +
Sbjct: 109 HLNFQTWLTSGLPFCNEQEEAAYEEKLHMPF-TDHAEQQ-------IADALI-----EAI 155
Query: 206 KHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 265
W A G E ID+ Q L + D
Sbjct: 156 DEWMPA---------------------GNEPLVRELPCVIDLARRLQSFLYRRY-----D 189
Query: 266 VLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR-GFREVIDLISAS 324
+ + K Q ++ LT D ++ + ++E + + E+++ + GFR ++ S
Sbjct: 190 SRIAVNYDGKPYLGQNIKFTLTKLDTNEWISEKEKRRLQCERDRGQQLGFRLFWKILVQS 249
Query: 325 QKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDV 369
+KP+V HN + D F+ P+ + EF L+ P + D
Sbjct: 250 RKPIVGHNFMQDVMFMIHMHETPISQDYLEFKKVLQRTLPSIYDT 294
>gi|308504273|ref|XP_003114320.1| hypothetical protein CRE_27458 [Caenorhabditis remanei]
gi|308261705|gb|EFP05658.1| hypothetical protein CRE_27458 [Caenorhabditis remanei]
Length = 565
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 78/350 (22%), Positives = 134/350 (38%), Gaps = 36/350 (10%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
I +NF E +I+ + SDFIA+ + G SS +S DT E Y + ++
Sbjct: 4 IKDSNFLELAPKIRKTLLHSDFIAIDFEFLGLDSSA---ISLHDTAEARYRILRENVVKY 60
Query: 92 QILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNT 151
+ Q + FK + + Y + + P L S L + FD N
Sbjct: 61 RPCQLGLSFFK--QTDNLGYKADSYSIP---LLQRFGDVDTKVSFSSLRFLLNNKFDLNQ 115
Query: 152 CIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNA 211
I DG+ + A+ ++ + A + +K + + + R ++ N+
Sbjct: 116 VITDGVEFCRRAEIRKFEIALRKGTATSYISKDIQLQIELLKVMLHEKCYRVELEKITNS 175
Query: 212 CT----DSDIKTEAALVTSLRKIVLGGEQFGS-RPSMTIDVCSERQVQLVLKMLEDFSDV 266
D ++K SL+ V G F S M I + Q V K S +
Sbjct: 176 TIEPMQDPNLKVAHNKPVSLK--VPSG--FSSVEICMVIHELTNAFPQFVFKFNSQNSTL 231
Query: 267 LVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQK 326
V ++ P K +T ++ R ++FE G +++ +K
Sbjct: 232 NVAML-PEK----------MTETENKNQTRLRCSESFE--------GISAILEAAMMMRK 272
Query: 327 PLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
+V HNSL D +++ F APLP N N F FP++ID + + +
Sbjct: 273 VIVGHNSLLDAMYLYHYFFAPLPQNYNAFKRQFHGLFPKIIDTKLIAQSL 322
>gi|350581696|ref|XP_003124631.3| PREDICTED: poly(A)-specific ribonuclease PARN-like, partial [Sus
scrofa]
Length = 523
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 6/118 (5%)
Query: 290 DEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLP 349
+E++ +++ Q E E+ K GF VI I+ S K ++ HN L D +F PLP
Sbjct: 131 EEERKRREQQKQAKEQEELKDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLP 190
Query: 350 PNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRF----FAPIEME 403
++NEF FP+++D L+ P K + N + ++A L+ R F P ++E
Sbjct: 191 ADLNEFKEMTTCVFPRLLDTK-LMASTQPFKDIIN-NTSLAELEKRLKETPFNPPKVE 246
>gi|358374410|dbj|GAA91002.1| CAF1 family ribonuclease [Aspergillus kawachii IFO 4308]
Length = 869
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 90/412 (21%), Positives = 163/412 (39%), Gaps = 74/412 (17%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
I+ F L + + ++S F+++ + +G + T + Y + K +A+++
Sbjct: 3 ISAQTFFYHLPRVLDDLASCCFVSIDFEFSGIAKGLGPSPKSRSTLQERYEEVKNSADQY 62
Query: 92 QILQ--FAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
QILQ IC + PYN +L P + K+ + + + Q+S + + + F
Sbjct: 63 QILQVGLTICHEDPETETYTLKPYNLYLSPIIDRKLDL-DRNCSFQSSAVEFLLENKFSM 121
Query: 150 NTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVAD-----TVFIERVRSR 204
+G++YLS +ES + R+ M + T + SS L VAD F++ R
Sbjct: 122 EDLYKNGVTYLSRDEESRIMARV---MQRNERTTARSS--LDVADHEHESIAFLKDARRL 176
Query: 205 VKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFS 264
V W E L + + G SM D+ + Q +LV +++E
Sbjct: 177 VDDWLALGK----ARENHLNIPPPRPINGPAPPNHPKSMPTDL-NRFQKRLVHQLIE--- 228
Query: 265 DVLVP-LIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREV---- 317
V P L+ ++ G Q + DE ++ R+ Q ++ Q + + GFR +
Sbjct: 229 -VEYPNLVTVSRPGFIQII-----DYDEQREKAVRD-QRVKWVQERIWKQTGFRWIAEAL 281
Query: 318 -------------IDLISASQ---------------------KP-LVAHNSLNDFTFIHS 342
I+L+S+S+ +P LV HN D +
Sbjct: 282 AGGDLTNLEPFCFINLMSSSKENPQSSLQDFSRRVKQRLQKNRPILVGHNLFTDLIYFCR 341
Query: 343 KFLAPLPPNMNEFICSLRLAFPQVIDVNYLLK----DIGPVKKMTNISATIA 390
F PLP + +F FP ++D Y+ I P + I+ ++A
Sbjct: 342 CFFGPLPDRVEDFQAMAHKMFPVLMDTKYMATHNCGSINPRSSLQEINDSLA 393
>gi|426254331|ref|XP_004020832.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Ovis
aries]
Length = 463
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 283 RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISASQKPLVAHNSLNDFTFI 340
R ++ S ++++ +RE Q EQ + GF VI I+ S K ++ HN L D
Sbjct: 62 RYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHT 121
Query: 341 HSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRF---- 396
+F PLP ++NEF FP+++D L+ P K + N + ++A L+ R
Sbjct: 122 VHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMASTQPFKDIIN-NTSLAELEKRLKETP 179
Query: 397 FAPIEME 403
F P ++E
Sbjct: 180 FNPPKVE 186
>gi|403274049|ref|XP_003928802.1| PREDICTED: poly(A)-specific ribonuclease PARN [Saimiri boliviensis
boliviensis]
Length = 464
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 283 RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISASQKPLVAHNSLNDFTFI 340
R ++ S ++++ +RE Q EQ + GF VI I+ S K ++ HN L D
Sbjct: 62 RYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHT 121
Query: 341 HSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRF---- 396
+F PLP ++NEF FP+++D L+ P K + N + ++A L+ R
Sbjct: 122 VHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMASTQPFKDIIN-NTSLAELEKRLKETP 179
Query: 397 FAPIEME 403
F P ++E
Sbjct: 180 FNPPKVE 186
>gi|84994634|ref|XP_952039.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65302200|emb|CAI74307.1| hypothetical protein, conserved [Theileria annulata]
Length = 623
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 83/346 (23%), Positives = 134/346 (38%), Gaps = 60/346 (17%)
Query: 48 ISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASK 107
I SDF+A+ ++ TG + E+ L AK +F C L +K
Sbjct: 105 IERSDFVALDVEYTGLHVKDERFIGVDKCYESHSLGAK---------KFIPCQIGLTMAK 155
Query: 108 VIAYPYNFHLFPRDELKMGMPSY--------SFTCQTSYLTAMAKEGFDFNTCIYDGISY 159
+ D K+ S SF+ S L + FDFN+ I DGI++
Sbjct: 156 ----------YENDLWKLTTTSLFTIPSEGKSFSVNMSTLNFLKDNNFDFNSWIRDGITH 205
Query: 160 LS---EAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSD 216
L+ E + ++ V + + ++ S S+ +E R+ N T+ D
Sbjct: 206 LTPKEEEERKSLIVSKLHQIQLNLKNLSDSN----------VESTRNT----SNVNTEYD 251
Query: 217 IKTEAALVTSLRKIVLGGEQFGSRPSMTIDV-CSERQVQLVLKMLEDFSDVLVPLIIPAK 275
+ + L R++V EQ R + I V E + L ++ F +L+ +I K
Sbjct: 252 VSSIKDLED--RRVV---EQMIERINEWILVEGDEGRAPLEFEVESAFLRLLMHSVISIK 306
Query: 276 -------GGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQ--NKRVRGFREVIDLISASQK 326
VR V+ + + L + E + NK+V G R + D IS + K
Sbjct: 307 YPNLYSNSSQRNGVRYVMVYKTQMELLEEERKLLEEELEAINKQV-GLRTLFDKISKNNK 365
Query: 327 PLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
LV HN D I+ F LP N+ +F FP + D Y+
Sbjct: 366 ILVGHNCFYDILHIYQTFYGDLPENVEDFKKKWVQVFPTIFDTKYI 411
>gi|407410179|gb|EKF32714.1| ribonuclease, putative [Trypanosoma cruzi marinkellei]
Length = 487
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 116/297 (39%), Gaps = 43/297 (14%)
Query: 81 YLKAKFAAERFQILQFAICPF-KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYL 139
Y + +R+ QF I F +L A PYNF+L F T +
Sbjct: 21 YEACRGVVKRYMAFQFGITLFTRLNAGGYEVKPYNFYLLKE--------HCDFAVNTDAI 72
Query: 140 TAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIE 199
+A DF T + G+ Y ++ +E ++ N +D K VF
Sbjct: 73 KFLAAHKLDFQTWLASGVHYCNKEEEGRFTMKKENYSYLDLEEK-----------IVF-- 119
Query: 200 RVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM 259
+ +++K W D K E L SL+ ++ G + ++ + E+ + + L
Sbjct: 120 HIVNKIKEWY---LDPCKKEEEIL--SLKTVMTKGIE-----ALVFSILKEQDIYVNL-- 167
Query: 260 LEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVID 319
++ D+ +P + VR V + D + K + + K GFR++
Sbjct: 168 --EYDDISKLYELPVE----ITVRRV-NRNKFDVEGKKTGMNSASAFSEKL--GFRQIWK 218
Query: 320 LISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
++ +KP++ HN D F+ APLP +F + FP + D L K++
Sbjct: 219 CLTKCKKPIIGHNFWLDIMFMFHMHEAPLPARYEDFKKQVHELFPCIYDTKTLSKNM 275
>gi|443698080|gb|ELT98249.1| hypothetical protein CAPTEDRAFT_110937 [Capitella teleta]
Length = 121
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 21/115 (18%)
Query: 36 NFNESLSEIKNHISSSDFIAVSLQNTG-------------SFSSPWHRVSTFDTPETAYL 82
+F ESL I I + F+++ + TG F S W DTPE Y
Sbjct: 12 DFKESLPLISQAIQDASFVSIDCEMTGDSLLTSLLCLIQSGFESHW-----MDTPEDRYN 66
Query: 83 KAKFAAERFQILQFAICPF--KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQ 135
K + A F ++QF +C F K + + + +NF++FPR + FTCQ
Sbjct: 67 KLRQGAMPFNVIQFGLCTFNKKEDSKQYSVHAFNFYIFPR-PVNSDATDVRFTCQ 120
>gi|229593727|ref|XP_001026894.2| CAF1 family ribonuclease containing protein [Tetrahymena
thermophila]
gi|225567345|gb|EAS06649.2| CAF1 family ribonuclease containing protein [Tetrahymena
thermophila SB210]
Length = 1272
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 85/180 (47%), Gaps = 11/180 (6%)
Query: 31 QITKTNFNESLSEIKNHISS--SDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
Q+TK NF +S + ++S ++FI+ + TG ++ + S D P Y K A
Sbjct: 2 QVTKQNFEQSFQIFSDLVNSPKTEFISYDFEMTGIRTT--EKESYNDMPFERYEKCAQVA 59
Query: 89 ERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSY--SFTCQTSYLTAMAKEG 146
++ ++Q + F + SK AYP+N ++ R K+ SY ++ + A+ G
Sbjct: 60 RKYALIQAGLTVFHKEDSKYTAYPFNAYVIRR---KIENTSYKPEVVLESGAIKFNAEHG 116
Query: 147 FDFNTCIYDGISYLSEAQESTV--KVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSR 204
DF+ I + ++++ Q + + +V N ++ K+ +S S+ T F E V R
Sbjct: 117 CDFDQWIKNSVTHIDREQYANLLKEVEQKNDLSQAERNKAINSIHQSLGFTKFFELVGKR 176
>gi|89273974|emb|CAJ81781.1| Novel protein similar to poly(A)-specific ribonuclease
(deadenylation nuclease) [Xenopus (Silurana) tropicalis]
Length = 424
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 290 DEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLP 349
+E++ ++++ Q E E+ GF +I IS+S K +V HN L D +F LP
Sbjct: 37 EEERKRMEQQKQAKEREELDDAVGFSRIIQAISSSGKLVVGHNMLLDIMHTIHQFFCQLP 96
Query: 350 PNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRF 396
+NEF FP+V+D L+ P K++ + ++A L+ R
Sbjct: 97 DELNEFKEVTNCVFPRVLDTK-LMASTNPFKEII-YNTSLAELEKRL 141
>gi|302855310|ref|XP_002959151.1| hypothetical protein VOLCADRAFT_108501 [Volvox carteri f.
nagariensis]
gi|300255470|gb|EFJ39774.1| hypothetical protein VOLCADRAFT_108501 [Volvox carteri f.
nagariensis]
Length = 987
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 28 PIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFA 87
P +T+ NF L ++ +++S DF A + TG F + D + Y + A
Sbjct: 260 PAVDVTRHNFEVMLPMVRRYLASCDFFAFDCEMTGLFLD-GQTENYLDDMQDRYTRTAAA 318
Query: 88 AERFQILQFAICPFKLQA-------SKVIAYPYNFHLFPR-DELKMGMPSYSFTCQTSYL 139
A+ F I QF + F+ Q ++ +A +NF+LFPR E S F C L
Sbjct: 319 AQSFIITQFGLSCFRRQPEPGPGGEARYLAATFNFYLFPRPPEGAAFGSSRRFLCDAGSL 378
Query: 140 TAMAKE 145
+ +A +
Sbjct: 379 SFLASQ 384
>gi|440639009|gb|ELR08928.1| hypothetical protein GMDG_03595 [Geomyces destructans 20631-21]
Length = 576
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 19/194 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTG----SFSSPWHRVSTFDTP--ETAYLKA 84
++ + +F L I IS++ F+ V ++ +G S SP R + P + Y
Sbjct: 2 EVDQQHFWHELLPILKAISTASFVTVDVEMSGISTKSRYSPSGRFNETGKPSLQQQYEDT 61
Query: 85 KFAAERFQILQFAICPFK--LQASKVIAYPYNFHLFPRDELKMGMPSY-SFTCQTSYLTA 141
K AAER+Q+LQ + + + A PYNF++ P E + Y T +S +
Sbjct: 62 KEAAERYQVLQIGLTCVEEDWKNGVYTARPYNFNINPLLEDGDKLAIYRDITLSSSSMHF 121
Query: 142 MAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSV--ADTV--- 196
+ K FD GISY+S +++ + ++ ++S+ P + + D V
Sbjct: 122 LRKNCFDIGAVFTKGISYISRKEQTQARQAF-----LERQNRNSTIPDIKIGPGDQVTLD 176
Query: 197 FIERVRSRVKHWKN 210
F R ++ W +
Sbjct: 177 FYRNARRQLLEWTD 190
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 321 ISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLL--KDIGP 378
++A + LV HN D F++ F+ LPP + EF + FP VID Y+ +
Sbjct: 320 LAAKSRVLVGHNLFTDLIFLYHTFIGILPPTVTEFQEKIHALFPMVIDTKYMATRDKLID 379
Query: 379 VKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIH--GHNVVKICQLFGKLCSILKI 436
++ +++ +K++ I + ++ +N ++H G++ Q+F KL + L +
Sbjct: 380 ARQSSSLQDLHQDVKSQHIPEICLPEEFRSYQNRHQLHEAGYDSYLTAQIFLKLAAKLDV 439
>gi|194389110|dbj|BAG61572.1| unnamed protein product [Homo sapiens]
Length = 464
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 283 RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISASQKPLVAHNSLNDFTFI 340
R ++ S ++++ +RE Q EQ + GF VI I+ S K ++ HN L D
Sbjct: 62 RYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHT 121
Query: 341 HSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRF---- 396
+F PLP +++EF FP+++D L+ P K + N + ++A L+ R
Sbjct: 122 VHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQPFKDIIN-NTSLAELEKRLKETP 179
Query: 397 FAPIEME 403
F P ++E
Sbjct: 180 FNPPKVE 186
>gi|115534690|ref|NP_506169.2| Protein K10C8.1 [Caenorhabditis elegans]
gi|83764264|emb|CAA98954.2| Protein K10C8.1 [Caenorhabditis elegans]
Length = 566
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 70/357 (19%), Positives = 140/357 (39%), Gaps = 57/357 (15%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
+T +NF ++ ++ + DF+A+ + G S +S DT E+ Y + ++
Sbjct: 4 VTDSNFLDAAGTLRKGLLYCDFVAIDFEFLGLDVSA---ISLHDTVESRYQILRDNVIKY 60
Query: 92 QILQFAICPFKLQASKVI-AYPYNFHLFPR---DELKMGMPSYSFTCQTSYLTAMAKEGF 147
+ Q + FK ++++ A Y+ LF R ++ + +PS F + K F
Sbjct: 61 RPCQLGLTLFKQKSNRAYKADTYSVPLFQRFGDNDTSISLPSMRF---------LVKNKF 111
Query: 148 DFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKH 207
+ N DG+ + + + K + A + V+S+++
Sbjct: 112 NLNQVFMDGVEFCTRKE----------------FKKFERALLAGTAASYLSREVKSQIEL 155
Query: 208 WKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVL 267
K + ++ + +T P I + + + L+M + S V
Sbjct: 156 LKVMVHEKCYQSTSYHIT----------HRTDEPMQKIPLKMKPNSSVSLRMPRNLSSVE 205
Query: 268 VPLIIPAKGGGTQAVRAVLTSSDEDK----------DLLKRE--LQTFEFEQNKRVRGFR 315
+II T+A L + DE + D LK + L+ ++ V+G
Sbjct: 206 KYMIIYEL---TKAFPQFLFTCDEKQQNLHVKNISDDYLKEKDNLERARARCSESVKGVS 262
Query: 316 EVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
++ ++ + K +V HNSL D +++ F + LP N F FP+++D L
Sbjct: 263 AILQVVHMTGKLVVGHNSLLDAMYMYHYFFSHLPANYQMFKDKFNALFPRIMDTKLL 319
>gi|324507288|gb|ADY43094.1| Poly(A)-specific ribonuclease PARN [Ascaris suum]
Length = 616
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 12/143 (8%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFS-SPWHRVSTFDTPETAYLKAKFAAER 90
+T NF + L +I N + ++ F+A L+ G +R S FD+P Y K + + +
Sbjct: 3 VTDDNFAQQLPQILNTVQNASFVAFDLEFLGFHGDDEANRPSLFDSPVERYRKQRLSVLK 62
Query: 91 FQILQFAICPFKL----QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F +Q+ + F + KV YN +LF R + +SF+ + + + +
Sbjct: 63 FPPVQWGLALFTAIDDGRHYKVDV--YNIYLFKR---TINRRVFSFSIPS--IAFLGEHD 115
Query: 147 FDFNTCIYDGISYLSEAQESTVK 169
FDFN I G++Y + + ST++
Sbjct: 116 FDFNKAINKGVTYANLDEISTIR 138
Score = 38.5 bits (88), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 311 VRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVN 370
+ G +++ I ++ P+V HN L D +I+ F A LP + ++ +L FP +ID
Sbjct: 276 IAGASQILYAIIDARLPVVGHNCLFDLLYIYQYFFADLPEDYAKWKKALNTIFPVIIDTR 335
Query: 371 YLLKD 375
L ++
Sbjct: 336 ILAEE 340
>gi|154276184|ref|XP_001538937.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150414010|gb|EDN09375.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 421
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 82/401 (20%), Positives = 142/401 (35%), Gaps = 95/401 (23%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTG-----SFSSP----WHRVSTFDTPETAYL 82
+TK +F++ L + N ++ S F+A+ L+ +G S SP W T + Y
Sbjct: 3 VTKQSFSQHLPRLLNDLAESTFVALDLEFSGIVARQSGPSPGSDLWGEKQTL---QERYE 59
Query: 83 KAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAM 142
+ K+AAE +Q+LQ + F R++ + G S Q + L +
Sbjct: 60 EVKYAAETYQVLQIGLT------------------FAREDTETGQ---SDRVQLTKLWGL 98
Query: 143 A-----------KEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALS 191
K GF +G+ YLS +E ++ + +
Sbjct: 99 KDDGRIKAVFLMKNGFRMEAPFVEGLPYLSRLEEKQAMAKLAESEHSITKIMDVNPKDMD 158
Query: 192 VADTVFIERVRSRVKHWKNACTDSD----IKTEAALVTSLRKIVLGGEQFGSRPSMTIDV 247
F+ +VR + W N D + I L + LG +F +++
Sbjct: 159 PESQAFLTQVRRLIDAWINETGDKEDYLNIPEPCPLENGNTESPLGSWRF------SLNS 212
Query: 248 CSERQVQLVLKM----LEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQT- 302
+R V ++++ L IIP +++R D+ + L +R +Q
Sbjct: 213 YQKRLVHQLVRVEYPSLVSIGRQTFVQIIPYDKQREESIRV-----DKSRALRERVIQKT 267
Query: 303 -FEFEQNKRVRGFREVID--------------------LISAS----------QKPLVAH 331
F + V G +D L+S S Q LV H
Sbjct: 268 GFRWVVEGMVGGGLSAMDPRVFLSCISNPAPVNTSTSALLSYSDDLQLKLKSRQPVLVGH 327
Query: 332 NSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
N D + F+ LP + +F ++ FP VID Y+
Sbjct: 328 NLFTDLINFYKCFIGDLPDRIEDFKNAIHALFPLVIDTKYM 368
>gi|349605143|gb|AEQ00478.1| Poly(A)-specific ribonuclease PARN-like protein, partial [Equus
caballus]
Length = 376
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 313 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
GF VI I+ S K ++ HN L D +F PLP ++NEF FP+++D L
Sbjct: 8 GFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTK-L 66
Query: 373 LKDIGPVKKMTNISATIAYLKNRF----FAPIEME 403
+ P K + N + ++A L+ R F P ++E
Sbjct: 67 MASTQPFKDIIN-NTSLAELEKRLKETPFNPPKVE 100
>gi|301108964|ref|XP_002903563.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262097287|gb|EEY55339.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 456
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 292 DKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPN 351
D+ L E++ E+N + GF V+D+I A++KP+V HN L D + KF PLP
Sbjct: 87 DEQLADDEIR----ERNLSLIGFTAVLDVIVAARKPIVGHNMLLDLMQCYEKFHGPLPGR 142
Query: 352 MNEF 355
+EF
Sbjct: 143 CSEF 146
>gi|330840342|ref|XP_003292176.1| hypothetical protein DICPUDRAFT_156861 [Dictyostelium purpureum]
gi|325077597|gb|EGC31299.1| hypothetical protein DICPUDRAFT_156861 [Dictyostelium purpureum]
Length = 526
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 320 LISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
+I+ Q P++ HN + D FI +A LP +N+FI L FP++ D Y+
Sbjct: 254 IIAKYQLPVIIHNGIFDLLFIFQSLIADLPDKLNDFIVKLVTVFPKIYDTKYI 306
>gi|444727164|gb|ELW67669.1| Poly(A)-specific ribonuclease PARN [Tupaia chinensis]
Length = 642
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 109 IAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTV 168
I +NF++FP+ P F CQ+S + +A +GFDFN +GI YL++ +E +
Sbjct: 46 ITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQL 104
Query: 169 K 169
+
Sbjct: 105 R 105
>gi|148664947|gb|EDK97363.1| poly(A)-specific ribonuclease (deadenylation nuclease), isoform
CRA_b [Mus musculus]
Length = 426
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 302 TFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRL 361
T E E+ GF VI I+ S K +V HN L D +F PLP ++NEF
Sbjct: 67 TKEQEELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAIC 126
Query: 362 AFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRF----FAPIEME 403
FP+++D L+ P K + N + ++A L+ R F P ++E
Sbjct: 127 VFPRLLDTK-LMASTQPFKDIIN-NTSLAELEKRLKETPFDPPKVE 170
>gi|342184465|emb|CCC93947.1| putative ribonuclease [Trypanosoma congolense IL3000]
Length = 510
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 82/403 (20%), Positives = 143/403 (35%), Gaps = 68/403 (16%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++K N +E ++ ++ + DF A+ + TG ++ T Y ++ R
Sbjct: 2 DVSKFNCSEIFNDFRDSMEKCDFFALDQEMTGVNHLERPQLKTM-CLNDLYAISREVVSR 60
Query: 91 FQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
+ Q + FK K YNF L + F TS L + G +F
Sbjct: 61 YVAFQLGVSIFKRVGDKYEVRAYNFFLLKDNG--------DFAVDTSALKFLLNNGMNFQ 112
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ G+ Y G P H K+ ALS+AD + S VKH +
Sbjct: 113 KWLTTGMPY--------GDTNGGAP----HRGKTPC--ALSLADIL----SNSLVKHIRK 154
Query: 211 ACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPL 270
DS + + L +LR I+ + +T+ ++ + ++ + S
Sbjct: 155 WYNDSPVCNDDCL--TLRAII-----YEEVEQLTLSKLRNERIYIAMEYDKSLS------ 201
Query: 271 IIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFE---FEQNKRVRGFREVIDLISASQKP 327
++T + LK E E + GF+ + +KP
Sbjct: 202 ---------MGTSVLVTVRRMEPGALKEETTRLEDPTASETGMAEGFQPFWKCLIKYKKP 252
Query: 328 LVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISA 387
LV HN D F+ PLP + + + + FP + D L + + VK+ S
Sbjct: 253 LVGHNFWLDIMFLVQMHAGPLPDDYDAYKKLVNYHFPVIYDTKTLGRQL--VKRSPLESF 310
Query: 388 TIAYLKNR-------------FFAPIEMEIPN-QANENEGKIH 416
+ L +R F +P E + N + +E K+H
Sbjct: 311 CLKDLYDRAIALNKSLPKPLEFISPPEFNLYNTEVDECSCKVH 353
>gi|187607044|ref|NP_001120127.1| target of EGR1, member 1 (nuclear) [Xenopus (Silurana) tropicalis]
gi|166796163|gb|AAI59038.1| LOC100145153 protein [Xenopus (Silurana) tropicalis]
Length = 513
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 311 VRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVI-DV 369
V+G R + + ++KPL+ HN L D F++ F A LP N+ FI L FP I D
Sbjct: 142 VKGIRTLFLELLRARKPLILHNGLIDLAFLYQCFYAQLPDNLGSFIADLSEMFPAGIYDT 201
Query: 370 NYL 372
Y+
Sbjct: 202 KYV 204
>gi|345305348|ref|XP_001505796.2| PREDICTED: poly(A)-specific ribonuclease PARN-like [Ornithorhynchus
anatinus]
Length = 392
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 313 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
GF VI I+ S K ++ HN L D +F PLP ++NEF FP+++D L
Sbjct: 25 GFSRVIHAIANSGKLVIGHNMLLDVMHTIHQFYCPLPEDLNEFKEVTACVFPRLLDTK-L 83
Query: 373 LKDIGPVKKMTNISATIAYLKNRFFA 398
+ P K++ N + ++A L+ R A
Sbjct: 84 MASTQPFKEIIN-NTSLAELEKRLKA 108
>gi|255956365|ref|XP_002568935.1| Pc21g19440 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590646|emb|CAP96841.1| Pc21g19440 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 542
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 31/186 (16%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
+T NF E L + N IS+S F+++ + +G P S T + Y++AK AAER+
Sbjct: 3 VTAVNFPECLPFMLNDISTSCFVSIDFELSGVVFKPGTPQSRPQTVQERYVEAKAAAERY 62
Query: 92 QILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNT 151
QILQ + V + + + RD +T + + + F +
Sbjct: 63 QILQVGLTTCHEDKENVTQHEMDVN---RD----------WTFGSRSMEFLLANHFSIDH 109
Query: 152 CIYDGISYLSEAQESTVKVRMGNPMAVDHAT-KSSSSPALSVADTV--------FIERVR 202
G+ YLS +E +A+ AT K S + VAD F+E VR
Sbjct: 110 MCTFGVRYLSREEEK---------LAIKRATEKCLSRHPVQVADIKKDDHESLEFLEAVR 160
Query: 203 SRVKHW 208
+ W
Sbjct: 161 VSINEW 166
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 316 EVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL-LK 374
+V + + S+ LV HN D F + FL PLP + EF + FP + D Y+
Sbjct: 296 KVKNRLKESRPVLVGHNMFCDLLFFYRCFLGPLPDTLAEFQTVIHDLFPVLADTKYMATH 355
Query: 375 DIG---PVKKMTNISATIAYLKN 394
D G P+ + ++ T+A +++
Sbjct: 356 DCGSLNPMSSLEELNTTLAGIES 378
>gi|432956699|ref|XP_004085743.1| PREDICTED: poly(A)-specific ribonuclease PARN-like, partial
[Oryzias latipes]
Length = 542
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 283 RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISASQKPLVAHNSLNDFTFI 340
R + S ++++ +RE Q E EQ + GF VI IS S K +V HN L D
Sbjct: 109 RFIQVSKVDEEERKRREQQKLEREQEELNDAVGFSRVIHAISKSGKLVVGHNMLLDVMHT 168
Query: 341 HSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTN 384
+F LP ++ +F FP+++D L+ P K++ N
Sbjct: 169 IHQFYCSLPEDLQDFKEVTMCVFPRLLDTK-LMASTQPFKELIN 211
>gi|66820356|ref|XP_643803.1| hypothetical protein DDB_G0275089 [Dictyostelium discoideum AX4]
gi|60471871|gb|EAL69825.1| hypothetical protein DDB_G0275089 [Dictyostelium discoideum AX4]
Length = 559
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 311 VRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVN 370
+R + ++D+++ +Q P V HN + D FI + LP +N+FI + FP++ D
Sbjct: 262 LRRSKLLLDILTKAQLPSVIHNGIFDLLFIFQSLIGDLPDKLNDFISKILSVFPKIYDTK 321
Query: 371 YL 372
Y+
Sbjct: 322 YI 323
>gi|260810923|ref|XP_002600172.1| hypothetical protein BRAFLDRAFT_66680 [Branchiostoma floridae]
gi|229285458|gb|EEN56184.1| hypothetical protein BRAFLDRAFT_66680 [Branchiostoma floridae]
Length = 441
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 90/240 (37%), Gaps = 53/240 (22%)
Query: 142 MAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERV 201
+ FDFN +Y+G+ YL + QE ++ + + +S P + ++
Sbjct: 58 LCDHNFDFNEFVYEGVPYLDQDQEKHLRKHL----------EQTSWPTAGGSQQDQVQLC 107
Query: 202 RSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLE 261
S V W + D+++ + G +F L+ + L
Sbjct: 108 CSTVSQWLSNGGDTELNIPSPK---------GPSRF-----------------LIHRALR 141
Query: 262 DFSDVLVPLIIPAKGGGTQ-AVRAV----LTSSDEDKDLLKRELQTFEFEQNKRVRGFRE 316
P + +Q AVR V +E DL R L + GF
Sbjct: 142 ----TRFPEVWTYDAANSQLAVRKVSEEKRKEEEEKDDLADRALDY--------MLGFSH 189
Query: 317 VIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
V ++ ++KP+V HN L D ++ K PLP ++F + + FP + D ++ ++
Sbjct: 190 VFRTLTQTRKPVVGHNMLMDLMLLYGKMYKPLPEKYDQFKRDIHVLFPCIYDTKHIAAEL 249
>gi|349806239|gb|AEQ18592.1| putative protein polyA-specific ribonuclease (deadenylation
nuclease) [Hymenochirus curtipes]
Length = 188
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 313 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
GF +I IS S K +V HN L D +F LP ++NEF FP+V+D L
Sbjct: 19 GFSRIIQAISTSGKLVVGHNMLLDVMHTIHQFFCQLPDDLNEFKEVTNCVFPRVLDTK-L 77
Query: 373 LKDIGPVKKM---TNISATIAYLKNRFFAP 399
+ P K++ T+++ LK+ F P
Sbjct: 78 MASTNPFKEIIYNTSLAELEKRLKDSPFKP 107
>gi|270013255|gb|EFA09703.1| hypothetical protein TcasGA2_TC011836 [Tribolium castaneum]
Length = 535
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 76/191 (39%), Gaps = 15/191 (7%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++TK NF + L EIK + + FI++ L+ + FD + Y K +
Sbjct: 3 EVTKNNFKQKLPEIKRSLEKAKFISIDLEFSALQPVEHQAPRLFDDNKERYAKLRLNLLN 62
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
+Q I F + + + F + P G +F Q S L+ + FD
Sbjct: 63 VIPVQVGITAFHFDNKTNDYFGEVFTFWVAPA---CFGDTDKAFYFQASTLSFLTMYKFD 119
Query: 149 FNTCIYDGISYLS--EAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FN Y G+ +L+ +A++ +K++ G+ + + + AL V +
Sbjct: 120 FNKFAYSGVPFLNSKDARDLRLKLKSGDLVGENCTLRHELDEALKAHTPV--------IS 171
Query: 207 HWKNACTDSDI 217
W N+C D
Sbjct: 172 KWYNSCKIGDF 182
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 313 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVID---V 369
GF+ V D ++A +KP+V HN L D + + F LP + ++ FP + D +
Sbjct: 251 GFKHVFDTLTALKKPIVGHNVLQDLMIMINNFENALPESYLQYKALAHQLFPTIFDTKTI 310
Query: 370 NYLLKDIGPVKKM---TNISATIAYLK 393
Y L+ P +K+ T++SA Y +
Sbjct: 311 YYELRATIPREKLPDDTSLSALFDYFR 337
>gi|348669379|gb|EGZ09202.1| hypothetical protein PHYSODRAFT_525456 [Phytophthora sojae]
Length = 465
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 292 DKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPN 351
D+ L E++ E+N + GF V+D I A++KP+V HN L D + KF PLP
Sbjct: 87 DQQLADDEMR----ERNLSLIGFTAVLDAIVAARKPIVGHNMLLDLMQCYEKFHGPLPAR 142
Query: 352 MNEF 355
EF
Sbjct: 143 CAEF 146
>gi|242761628|ref|XP_002340217.1| CAF1 family ribonuclease, putative [Talaromyces stipitatus ATCC
10500]
gi|218723413|gb|EED22830.1| CAF1 family ribonuclease, putative [Talaromyces stipitatus ATCC
10500]
Length = 536
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 84/384 (21%), Positives = 141/384 (36%), Gaps = 57/384 (14%)
Query: 41 LSEIKNHISSSDFIAVSLQNTGSFSSPWHRV-STFDTPETAYLKAKFAAERFQILQFAIC 99
L I IS F+A+ + +G P H+ S + + Y + K AA+ +QILQ +
Sbjct: 17 LPGILRDISECAFVALDFEFSGI---PSHQAGSRPQSLQERYAEVKEAAKTYQILQVGLT 73
Query: 100 PFK----LQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYD 155
K + K P+N L P + + + +F ++ + +AK GF+ +
Sbjct: 74 IVKEDVLREKGKYTVKPFNIPLSPWIDPSLHV-DRTFGLSSNAIHFLAKIGFNLGETCEN 132
Query: 156 GISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVAD---TVFIERVRSRVKHWKNAC 212
G+ YLS+ + + T + LS D F+ +R ++ W NA
Sbjct: 133 GVPYLSKKEVDEILDEARRFHGSRWQTAKRAQIILSDDDIESAAFLAGIRKDIEEWLNAD 192
Query: 213 TDS-DIKTEAAL----VTSLRKIVLGGEQFGSRPSMT-------IDVCSERQVQLVLKML 260
D D AL T K ++ PS+T I + + + K
Sbjct: 193 WDKPDYLHVPALNGHAFTRFEKRLIHQLVETEYPSLTSIRSGESIKIVKYDEAKEHKKYE 252
Query: 261 EDFSDVLVPLI--------IPAKGGG------TQAVRAVLTSSDEDKDLLKRELQTFEFE 306
S V LI I A GG +Q ++ D + K ++ T
Sbjct: 253 GKMSRVQQRLIDHRGFAWVIEALAGGDLSQMTSQMFEPLVIGEGPDAEYHKTQIITKLKA 312
Query: 307 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 366
+N ++ +V HN D T++ F LP + +F L FP +
Sbjct: 313 RNGQI---------------AIVGHNLFMDVTYLWQCFYGDLPDRVEDFAQLLHEKFPML 357
Query: 367 IDVNYLLK----DIGPVKKMTNIS 386
ID Y+ D+ P + I+
Sbjct: 358 IDTKYIFTHDCGDMNPAATLEKIA 381
>gi|389630114|ref|XP_003712710.1| hypothetical protein MGG_05172 [Magnaporthe oryzae 70-15]
gi|351645042|gb|EHA52903.1| hypothetical protein MGG_05172 [Magnaporthe oryzae 70-15]
Length = 426
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 326 KPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
+ +V HNSL D FI++ F+ LP ++ +F +R FP+ +D Y+
Sbjct: 326 RVIVGHNSLFDLCFIYNSFIGTLPTSLQQFKIDIRAMFPRYVDTKYM 372
>gi|74137718|dbj|BAE24048.1| unnamed protein product [Mus musculus]
Length = 189
Score = 45.8 bits (107), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 13/116 (11%)
Query: 104 QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEA 163
+++K +A+ NF LFP G+ F+ Q S + + + GFD+N + +GI Y++E
Sbjct: 8 ESNKYVAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEE 64
Query: 164 QESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKT 219
QE +K H+ + S D I+ V +V W + + D T
Sbjct: 65 QEKKIK----------HSILRGNWRVRSSLDKDQIKVVIDKVTQWLDLAEEGDQMT 110
>gi|440469932|gb|ELQ39023.1| hypothetical protein OOU_Y34scaffold00516g58 [Magnaporthe oryzae
Y34]
gi|440483021|gb|ELQ63464.1| hypothetical protein OOW_P131scaffold00982g62 [Magnaporthe oryzae
P131]
Length = 582
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 328 LVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
+V HNSL D FI++ F+ LP ++ +F +R FP+ +D Y+
Sbjct: 343 IVGHNSLFDLCFIYNSFIGTLPTSLQQFKIDIRAMFPRYVDTKYM 387
>gi|405977745|gb|EKC42179.1| Target of EGR1 protein 1 [Crassostrea gigas]
Length = 319
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 314 FREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP-QVIDVNYL 372
R ++ S+KP+V HN+L D +++ F A LPP M+ FI L F V D Y+
Sbjct: 172 LRSFFTVLVKSRKPVVFHNALTDLVYLYQNFYASLPPTMSSFIADLTEIFEGGVYDTKYI 231
>gi|71031200|ref|XP_765242.1| hypothetical protein [Theileria parva strain Muguga]
gi|68352198|gb|EAN32959.1| hypothetical protein, conserved [Theileria parva]
Length = 624
Score = 45.8 bits (107), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 20/119 (16%)
Query: 308 NKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVI 367
NK++ G R + D +S + K LV HN D I+ F LP N+ +F FP +
Sbjct: 349 NKQI-GLRTLFDTVSKNNKILVGHNCFYDILHIYQTFYGDLPENVEDFKKKWVQVFPTIF 407
Query: 368 DVNYLLKDIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQL 426
D Y+ + T T+ L N F +PNQ +G N VKI L
Sbjct: 408 DTKYISEYYHQFTPHT----TLKSLYNSF-------LPNQ--------NGFNRVKISSL 447
>gi|91090816|ref|XP_971302.1| PREDICTED: similar to Poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Tribolium castaneum]
Length = 510
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 313 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVID---V 369
GF+ V D ++A +KP+V HN L D + + F LP + ++ FP + D +
Sbjct: 255 GFKHVFDTLTALKKPIVGHNVLQDLMIMINNFENALPESYLQYKALAHQLFPTIFDTKTI 314
Query: 370 NYLLKDIGPVKKM---TNISATIAYLKN 394
Y L+ P +K+ T++SA Y +
Sbjct: 315 YYELRATIPREKLPDDTSLSALFDYFRG 342
>gi|452823525|gb|EME30535.1| nucleotidyltransferase [Galdieria sulphuraria]
Length = 1412
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 317 VIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKD 375
++ I+ S+ PLV + L D ++ F APLP ++ F+ L L P+V D+ L++D
Sbjct: 267 LLRYIAESRVPLVVFDGLVDLMALYHAFHAPLPKRLDSFLVQLSLLLPRVYDIRCLIED 325
>gi|407408061|gb|EKF31630.1| ribonuclease, putative [Trypanosoma cruzi marinkellei]
Length = 649
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 306 EQNKRVRGFREVIDLISAS---QKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLA 362
E++ R G R + L++A+ +K LV HN L+D F+++ LP + EF S+R
Sbjct: 374 EKDARYFGTRLLEALVTATRCWKKILVIHNGLSDLAFLYAAMHQQLPKTLGEFKRSIRDM 433
Query: 363 FPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFF 397
FP D + + + NI A LK +F
Sbjct: 434 FPFFFDT----RTLTCAPSLQNIGMLTATLKKTYF 464
>gi|346472889|gb|AEO36289.1| hypothetical protein [Amblyomma maculatum]
Length = 450
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 306 EQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP- 364
+ ++ R++ L+ +KP+V HN D F++ F LPP + F+ L FP
Sbjct: 143 QSEEKAHSLRKLFSLLVVHRKPIVFHNGFMDTVFLYHSFYLALPPTLQTFLADLNELFPS 202
Query: 365 QVIDVNYL 372
+V D ++
Sbjct: 203 RVYDTKFI 210
>gi|407860775|gb|EKG07489.1| ribonuclease, putative [Trypanosoma cruzi]
Length = 633
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 306 EQNKRVRGFREVIDLISAS---QKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLA 362
E+N R G R + L++A+ +K LV HN L+D F+ + P P + EF ++R
Sbjct: 358 EKNPRYFGTRLLETLVTATRCWKKILVIHNGLSDLAFLCAAMHQPPPETLGEFKRTIREM 417
Query: 363 FPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFF 397
FP D + + + NI A LK +F
Sbjct: 418 FPFFFDT----RTLTCAPSLQNIGILTATLKKTYF 448
>gi|449017212|dbj|BAM80614.1| hypothetical protein CYME_CMK272C [Cyanidioschyzon merolae strain
10D]
Length = 1647
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%)
Query: 316 EVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
++ +++ S PLV + L + ++ F APLPP+++ FI +L + P+V+DV +
Sbjct: 385 QLFRMLAESGVPLVFFDGLFEIMSMYEAFYAPLPPDLDAFIATLGIVTPRVVDVRCM 441
>gi|367049582|ref|XP_003655170.1| hypothetical protein THITE_155482 [Thielavia terrestris NRRL 8126]
gi|347002434|gb|AEO68834.1| hypothetical protein THITE_155482 [Thielavia terrestris NRRL 8126]
Length = 513
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 19/147 (12%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTF--DTPETAYLKAKFAAE 89
I ++NF ++L + IS S+++A+ L+ TG H V T +T TAY A AA
Sbjct: 3 INRSNFWQTLPTVLEAISLSEYVAIDLEMTGVSG---HAVDTAPENTEITAYQLAAEAAR 59
Query: 90 RFQILQFAIC--PFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFT------CQTSY--L 139
FQ+LQF + + + + + + FHL P + PS + SY
Sbjct: 60 TFQVLQFGMTCLSYDDEQNGYQSKTFTFHLTP----EFAPPSTALAKLIDRKVVLSYRSF 115
Query: 140 TAMAKEGFDFNTCIYDGISYLSEAQES 166
+ + F F G+ YLS + +
Sbjct: 116 LFLKENNFSFEKAFSQGVPYLSRPESA 142
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 309 KRVRGFREVIDL------ISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLA 362
+R R R +DL I + +V HN D FI FL PLP ++ F +
Sbjct: 301 RRSRIARLHVDLRLYEGRIKQRRPVIVGHNPFLDLCFIQETFLRPLPDDVAAFRRDMGEF 360
Query: 363 FPQVIDVNYLLKDIG 377
FP+V+D YL +G
Sbjct: 361 FPRVVDTKYLSSQLG 375
>gi|294934752|ref|XP_002781223.1| hypothetical protein Pmar_PMAR019548 [Perkinsus marinus ATCC 50983]
gi|239891558|gb|EER13018.1| hypothetical protein Pmar_PMAR019548 [Perkinsus marinus ATCC 50983]
Length = 672
Score = 43.1 bits (100), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 29/164 (17%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
+T+ N+ + + I DF+ + + TG S R D AY A F
Sbjct: 30 VTRHNWEKLRPVLLQEIEKCDFLTIDFELTGLLLSQEDRHIGLDKVYDAYCSG---ARHF 86
Query: 92 QILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMP----------------------- 128
LQ +C P++ +++P+ + P
Sbjct: 87 MPLQMGLCAVTRHDRGWRLAPFSVYMWPQRSATVNRPAVLQATANGSSSSASTSTGHGGD 146
Query: 129 ---SYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVK 169
S +F + + +++ GFD N CI +G+ +L QE K
Sbjct: 147 SPDSDAFMVSVTAMNFLSEAGFDLNECIKNGVGWLRPEQERAKK 190
>gi|327270964|ref|XP_003220258.1| PREDICTED: target of EGR1 protein 1-like [Anolis carolinensis]
Length = 538
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 307 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 366
+++ VR F ++LI A +KPL+ HN L D F++ F A LP N+ F L FP
Sbjct: 141 ESQTVRTF--FLELIRA-RKPLILHNGLIDLVFLYQCFYAQLPDNLGTFTGDLSEMFPAG 197
Query: 367 I-DVNY 371
I D Y
Sbjct: 198 IYDTKY 203
>gi|347840116|emb|CCD54688.1| hypothetical protein [Botryotinia fuckeliana]
Length = 354
Score = 42.7 bits (99), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 316 EVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
+VI + Q +V HN D F++ F+ LP + +F + FP VID YL
Sbjct: 65 KVIKKLKEKQHVIVGHNLFTDLCFLYKTFIGDLPAGVGDFQSQIHSLFPFVIDTKYL 121
>gi|449017190|dbj|BAM80592.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 622
Score = 42.4 bits (98), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 317 VIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
V+ ++ S KP++ HN L D + + F APLPP++ EF L P +L +
Sbjct: 233 VLSVLLGSGKPVIFHNGLYDLLLMFAAFEAPLPPSVEEFRTQLATRCPGYFFDTRVLGEF 292
Query: 377 GPVKKMTNISATIAYLKNRF 396
P ++ + A + Y+ ++
Sbjct: 293 VPA-RLRDCPAYLEYVFRKY 311
>gi|348669380|gb|EGZ09203.1| hypothetical protein PHYSODRAFT_423896 [Phytophthora sojae]
Length = 243
Score = 42.4 bits (98), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 79/201 (39%), Gaps = 25/201 (12%)
Query: 40 SLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAIC 99
+L ++ +S S F+A+ + G R S D+ + + + + +A +F ++QF +
Sbjct: 23 ALGRLQRVVSRSAFVAIDTEMGGVSCHDTPRPSVMDSIDERFAQYRESARQFPLVQFGLS 82
Query: 100 PFKLQASKVI--AYPYNFHLFPRDELKM-------------------GMPSYSFTCQTSY 138
F A + Y F LFP K+ P F Q
Sbjct: 83 VFLWDADARVFRVETYQFPLFPVFHEKVFGHGSSSNAANGSAGAGASACPDRRFLVQAKC 142
Query: 139 LTAMAKEGFDFNTCIYDGISYLS--EAQESTVKVRMGNPMAVDHATK-SSSSPALSVADT 195
L + GFD N I GI +LS E Q+ K + + K PAL +T
Sbjct: 143 LQYIRAHGFDLNAWIDRGIGHLSHHEQQQEPCKSALERSARPEILRKFDPQQPALITDET 202
Query: 196 -VFIERVRSRVKHWKNACTDS 215
F++++ +++K A D+
Sbjct: 203 QAFLDQLAAKLKQRLAAFDDA 223
>gi|18605651|gb|AAH23109.1| Target of EGR1, member 1 (nuclear) [Mus musculus]
Length = 511
Score = 42.4 bits (98), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 307 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 366
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 367 I-DVNY 371
I D Y
Sbjct: 226 IYDTKY 231
>gi|118094556|ref|XP_422434.2| PREDICTED: target of EGR1 protein 1 [Gallus gallus]
Length = 534
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 307 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 366
Q++ VR F ++LI A +KPL+ HN L D F++ F A LP ++ F L FP
Sbjct: 141 QSQSVRTF--FLELIRA-KKPLILHNGLIDLVFLYQCFYAHLPDSLGTFTSDLSEMFPAG 197
Query: 367 I-DVNY 371
I D Y
Sbjct: 198 IYDTKY 203
>gi|344239262|gb|EGV95365.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Cricetulus griseus]
Length = 74
Score = 42.4 bits (98), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 320 LISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 376
++ +QK LV HN + D + KF PLP + +EF ++ FP +ID + +DI
Sbjct: 1 MLVRAQKSLVGHNMMMDLLHLLEKFFKPLPESYDEFKQNIHSLFPVIIDTKNVTEDI 57
>gi|116207778|ref|XP_001229698.1| hypothetical protein CHGG_03182 [Chaetomium globosum CBS 148.51]
gi|88183779|gb|EAQ91247.1| hypothetical protein CHGG_03182 [Chaetomium globosum CBS 148.51]
Length = 406
Score = 42.4 bits (98), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 321 ISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIG--P 378
+ A + L+ HN D F+H FL PLP + F + FP++ID +L +G P
Sbjct: 177 LRAHRPILIGHNPFLDLCFLHETFLQPLPADALAFRRATHRFFPRIIDTKHLACQLGWKP 236
Query: 379 VKKMTNISATI 389
+ + + A +
Sbjct: 237 SRNLAQLYADL 247
>gi|432915315|ref|XP_004079174.1| PREDICTED: target of EGR1 protein 1-like [Oryzias latipes]
Length = 539
Score = 42.4 bits (98), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 12/108 (11%)
Query: 324 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVI-DVNYLLKDIGPVKKM 382
++KPLV HN L D F++ F A LP + F L FP I D Y+ +
Sbjct: 157 ARKPLVLHNGLIDMAFLYQSFYAHLPERLATFTADLSDMFPAGIYDTKYITE-------- 208
Query: 383 TNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKL 430
+ T +YL+ +A + ++ N + G H + CQ G +
Sbjct: 209 FELRLTASYLE---YAYKKCKLDNSRGVSSGAPGPHLHIGFCQYAGHM 253
>gi|21311839|ref|NP_080930.1| target of EGR1 protein 1 [Mus musculus]
gi|81904848|sp|Q9D2E2.1|TOE1_MOUSE RecName: Full=Target of EGR1 protein 1
gi|12860185|dbj|BAB31871.1| unnamed protein product [Mus musculus]
gi|26338213|dbj|BAC32792.1| unnamed protein product [Mus musculus]
gi|26350157|dbj|BAC38718.1| unnamed protein product [Mus musculus]
gi|148698640|gb|EDL30587.1| target of EGR1, member 1 (nuclear), isoform CRA_d [Mus musculus]
Length = 511
Score = 42.4 bits (98), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 307 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 366
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 367 I-DVNY 371
I D Y
Sbjct: 226 IYDTKY 231
>gi|157821287|ref|NP_001100150.1| target of EGR1 protein 1 [Rattus norvegicus]
gi|149035569|gb|EDL90250.1| target of EGR1, member 1 (nuclear) (predicted), isoform CRA_c
[Rattus norvegicus]
Length = 393
Score = 42.0 bits (97), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 307 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 366
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 367 I-DVNY 371
I D Y
Sbjct: 226 IYDTKY 231
>gi|260818111|ref|XP_002603928.1| hypothetical protein BRAFLDRAFT_287482 [Branchiostoma floridae]
gi|229289252|gb|EEN59939.1| hypothetical protein BRAFLDRAFT_287482 [Branchiostoma floridae]
Length = 463
Score = 42.0 bits (97), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 315 REVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVI 367
R++ + S+ PL+ HN L D F++ F LPP + F+ L FP I
Sbjct: 150 RQLFSELVCSRVPLILHNGLVDLVFLYQSFYTELPPTLGSFLADLSEMFPAGI 202
>gi|328870381|gb|EGG18755.1| hypothetical protein DFA_02494 [Dictyostelium fasciculatum]
Length = 515
Score = 42.0 bits (97), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 316 EVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNY-LLK 374
++I ++ LV HN L D FI+ F+ LP + FI + FP++ +NY LK
Sbjct: 288 KIISSLTKYSPTLVVHNGLFDLLFIYQSFIGDLPEQLASFISQFLITFPKIERINYKRLK 347
Query: 375 D 375
D
Sbjct: 348 D 348
>gi|83771094|dbj|BAE61226.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391871094|gb|EIT80260.1| hypothetical protein Ao3042_03277 [Aspergillus oryzae 3.042]
Length = 205
Score = 42.0 bits (97), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 306 EQNKRVRGFREVIDLISASQKP-LVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP 364
E + GF E + + +P LV HN D +++ F PLP + EF + FP
Sbjct: 95 EPQVSLHGFSEKLQQRLRTHRPVLVGHNLFTDVVYLYRCFFGPLPDKLEEFQAIVHHMFP 154
Query: 365 QVIDVNYLLK----DIGPVKKMTNISATIAYLKN 394
++D Y+ I P ++ I+ + ++K
Sbjct: 155 ILMDTKYMATHDCGSITPKSSLSEINDNLLHIKT 188
>gi|149035571|gb|EDL90252.1| target of EGR1, member 1 (nuclear) (predicted), isoform CRA_e
[Rattus norvegicus]
Length = 504
Score = 42.0 bits (97), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 307 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 366
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 367 I-DVNY 371
I D Y
Sbjct: 226 IYDTKY 231
>gi|375493522|ref|NP_001243611.1| target of EGR1 protein 1 [Danio rerio]
Length = 483
Score = 42.0 bits (97), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 17/155 (10%)
Query: 318 IDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVI-DVNYLLKDI 376
++L+ A+ KPLV HN L D F++ F A LP + F L FP I D Y +
Sbjct: 151 VELLRAN-KPLVLHNGLIDLVFLYQCFYAHLPDRLGTFTADLSQMFPSGIYDTKYATE-- 207
Query: 377 GPVKKMTNISATIAYLKNRFFAPIEMEIPN-QANENEGKIHGHNV-VKICQLFGKLCSIL 434
+ T +YL+ +A + ++ N +A E EG G N+ V+ C+ G + + +
Sbjct: 208 ------YELRFTASYLE---YAYKKCKLENSKAIEAEGS--GSNLFVEFCKYTGNMETYI 256
Query: 435 KITPDAIESSDDFLASAINRYANIFYSLPGSSQEP 469
P S D A I + + P SQ P
Sbjct: 257 DYRPCLDSQSQDDGALNICVQFSAYGWCPNGSQCP 291
>gi|260818115|ref|XP_002603930.1| hypothetical protein BRAFLDRAFT_146106 [Branchiostoma floridae]
gi|229289254|gb|EEN59941.1| hypothetical protein BRAFLDRAFT_146106 [Branchiostoma floridae]
Length = 454
Score = 42.0 bits (97), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 315 REVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVI 367
R++ + S+ PL+ HN L D F++ F LPP + F+ L FP I
Sbjct: 146 RQLFSELVCSRVPLILHNGLVDLVFLYQSFYTELPPTLGSFLADLSEMFPAGI 198
>gi|149035570|gb|EDL90251.1| target of EGR1, member 1 (nuclear) (predicted), isoform CRA_d
[Rattus norvegicus]
Length = 359
Score = 42.0 bits (97), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 307 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 366
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 367 I-DVNY 371
I D Y
Sbjct: 226 IYDTKY 231
>gi|219125272|ref|XP_002182908.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405702|gb|EEC45644.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 663
Score = 42.0 bits (97), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKA-KFAAER 90
+TK NF E +++ H+ ++ FIA+ + TG R + P Y K+ ER
Sbjct: 4 VTKENFIEQTNDLLQHLPTAAFIAIDEEMTGITVPGTPRPAKEQPPSALYASTLKYVPER 63
Query: 91 FQILQFAICPFKL-----QASKVIAYPYNFHLFP 119
+ I+Q + F + + A YNF++FP
Sbjct: 64 YSIIQLGVVLFHATSEPGEVHEWQARRYNFYVFP 97
>gi|149035568|gb|EDL90249.1| target of EGR1, member 1 (nuclear) (predicted), isoform CRA_b
[Rattus norvegicus]
Length = 489
Score = 42.0 bits (97), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 307 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 366
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 154 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 210
Query: 367 I-DVNY 371
I D Y
Sbjct: 211 IYDTKY 216
>gi|149035572|gb|EDL90253.1| target of EGR1, member 1 (nuclear) (predicted), isoform CRA_f
[Rattus norvegicus]
Length = 296
Score = 42.0 bits (97), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 307 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQ- 365
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 366 VIDVNY 371
+ D Y
Sbjct: 226 IYDTKY 231
>gi|321474146|gb|EFX85112.1| hypothetical protein DAPPUDRAFT_194080 [Daphnia pulex]
Length = 232
Score = 42.0 bits (97), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 309 KRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVI 367
K R++ ++ +++ PLV HN L D F++ A LP ++ F+ L + FP I
Sbjct: 149 KATWDLRDLFAVVISAKVPLVLHNGLVDLVFLYQNLYADLPTKLSSFLADLEVMFPNGI 207
>gi|149035567|gb|EDL90248.1| target of EGR1, member 1 (nuclear) (predicted), isoform CRA_a
[Rattus norvegicus]
gi|149035574|gb|EDL90255.1| target of EGR1, member 1 (nuclear) (predicted), isoform CRA_a
[Rattus norvegicus]
Length = 377
Score = 42.0 bits (97), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 307 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 366
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 42 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 98
Query: 367 I-DVNY 371
I D Y
Sbjct: 99 IYDTKY 104
>gi|296207798|ref|XP_002750797.1| PREDICTED: target of EGR1 protein 1 [Callithrix jacchus]
Length = 511
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 307 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 366
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 367 I-DVNY 371
I D Y
Sbjct: 226 IYDTKY 231
>gi|149035573|gb|EDL90254.1| target of EGR1, member 1 (nuclear) (predicted), isoform CRA_g
[Rattus norvegicus]
Length = 293
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 307 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQ- 365
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 366 VIDVNY 371
+ D Y
Sbjct: 226 IYDTKY 231
>gi|348537505|ref|XP_003456234.1| PREDICTED: target of EGR1 protein 1-like [Oreochromis niloticus]
Length = 530
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 324 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVI-DVNYLLKDIGPVKKM 382
++KPLV HN L D F++ F A LP + F L FP I D Y+ +
Sbjct: 157 ARKPLVLHNGLIDMAFLYQSFYAHLPERLATFTADLSEMFPAGIYDTKYVTE-------- 208
Query: 383 TNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKL 430
+ + +YL+ +A + ++ N + G H ++ CQ G +
Sbjct: 209 FELRLSASYLE---YAYKKCKLDNGRSVGSGTTGPHVHIEFCQYAGHM 253
>gi|427796785|gb|JAA63844.1| Putative caf1 family ribonuclease, partial [Rhipicephalus
pulchellus]
Length = 435
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 310 RVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP-QVID 368
+ R++ ++ +KP+V HN D F++ + LPP++ F+ L FP ++ D
Sbjct: 142 KAHSLRKLFSMLIVHKKPIVVHNGFMDAVFLYHSLYSALPPSLPTFLADLNDLFPGRIYD 201
Query: 369 VNYL 372
Y+
Sbjct: 202 TKYI 205
>gi|149035576|gb|EDL90257.1| target of EGR1, member 1 (nuclear) (predicted), isoform CRA_i
[Rattus norvegicus]
Length = 166
Score = 41.6 bits (96), Expect = 1.1, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 307 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQ- 365
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 42 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 98
Query: 366 VIDVNY 371
+ D Y
Sbjct: 99 IYDTKY 104
>gi|148698638|gb|EDL30585.1| target of EGR1, member 1 (nuclear), isoform CRA_b [Mus musculus]
Length = 410
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 307 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQ- 365
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 366 VIDVNY 371
+ D Y
Sbjct: 226 IYDTKY 231
>gi|291229794|ref|XP_002734856.1| PREDICTED: TOE1 homolog [Saccoglossus kowalevskii]
Length = 544
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 311 VRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP-QVIDV 369
V FRE+ I ++KPL+ HN D F++ F + LP +M F+ L F + D
Sbjct: 145 VHQFRELFSEIIKAEKPLIFHNGFLDLVFLYQCFYSELPSSMATFLADLSEIFSGGLFDT 204
Query: 370 NYL 372
Y+
Sbjct: 205 KYI 207
>gi|320586948|gb|EFW99611.1| caf1 family ribonuclease [Grosmannia clavigera kw1407]
Length = 361
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%)
Query: 321 ISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVK 380
+ Q LV HN L D F++ F LP N+++F + FP+++D L+ G
Sbjct: 235 LKQRQPVLVGHNMLVDLCFLYRTFFETLPENLSDFSHKIHELFPRIVDTKNLVARGGHDM 294
Query: 381 KMTNISATIAYLKNRFFAPI 400
N ++ N+ P+
Sbjct: 295 HTVNNLQQLSTEANKLRKPV 314
>gi|238502431|ref|XP_002382449.1| hypothetical protein AFLA_002480 [Aspergillus flavus NRRL3357]
gi|220691259|gb|EED47607.1| hypothetical protein AFLA_002480 [Aspergillus flavus NRRL3357]
Length = 375
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 13/132 (9%)
Query: 324 SQKP-LVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLK----DIGP 378
+ +P LV HN D +++ F PLP + EF + FP ++D Y+ I P
Sbjct: 130 THRPVLVGHNLFTDVVYLYRCFFGPLPDKLEEFQAIVHHMFPILMDTKYMATHDCGSITP 189
Query: 379 VKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIH---GHNVVKICQLFGKLCSILK 435
++ I+ + ++K + + N +I G++ + Q+F KL + L+
Sbjct: 190 KSSLSEINDNLLHIKTPKISAENASPYIHSKYNSQRIDHEAGYDSLLTAQIFIKLSAQLR 249
Query: 436 -----ITPDAIE 442
PD +E
Sbjct: 250 DGGISKLPDPVE 261
>gi|198434423|ref|XP_002129875.1| PREDICTED: similar to target of EGR1, member 1 (nuclear)
(predicted) [Ciona intestinalis]
Length = 446
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 314 FREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQ-VIDVNYL 372
F E+I L +KPLV HN L D F+++ A LP +N F+ + FP + D Y+
Sbjct: 146 FAEIIKL----RKPLVLHNGLVDLVFLYNSLYAELPGTLNSFMADVCEIFPAGIYDCKYI 201
>gi|148698639|gb|EDL30586.1| target of EGR1, member 1 (nuclear), isoform CRA_c [Mus musculus]
Length = 329
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 307 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQ- 365
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 366 VIDVNY 371
+ D Y
Sbjct: 226 IYDTKY 231
>gi|426215406|ref|XP_004001963.1| PREDICTED: target of EGR1 protein 1 isoform 3 [Ovis aries]
Length = 510
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 307 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 366
Q + VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QRQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 367 I-DVNY 371
I D Y
Sbjct: 226 IYDTKY 231
>gi|115497764|ref|NP_001069062.1| target of EGR1 protein 1 [Bos taurus]
gi|121957141|sp|Q17QN2.1|TOE1_BOVIN RecName: Full=Target of EGR1 protein 1
gi|109658265|gb|AAI18262.1| Target of EGR1, member 1 (nuclear) [Bos taurus]
gi|296488884|tpg|DAA30997.1| TPA: target of EGR1 protein 1 [Bos taurus]
gi|440907295|gb|ELR57455.1| Target of EGR1 protein 1 [Bos grunniens mutus]
Length = 524
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 307 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 366
Q + VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QRQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 367 I-DVNY 371
I D Y
Sbjct: 226 IYDTKY 231
>gi|426215404|ref|XP_004001962.1| PREDICTED: target of EGR1 protein 1 isoform 2 [Ovis aries]
Length = 524
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 307 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 366
Q + VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QRQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 367 I-DVNY 371
I D Y
Sbjct: 226 IYDTKY 231
>gi|71404979|ref|XP_805146.1| ribonuclease [Trypanosoma cruzi strain CL Brener]
gi|70868440|gb|EAN83295.1| ribonuclease, putative [Trypanosoma cruzi]
Length = 633
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 306 EQNKRVRGFREVIDLISAS---QKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLA 362
E++ R G R + L++A+ +K LV HN L+D F+ + P P + EF ++R
Sbjct: 358 EKDPRYFGTRLLEALVTATRCWKKILVIHNGLSDLAFLCAAMHQPPPETLGEFKRTIREM 417
Query: 363 FPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFF 397
FP D + + + NI A LK +F
Sbjct: 418 FPFFFDT----RTLTCAPSLQNIGILTATLKKTYF 448
>gi|426215408|ref|XP_004001964.1| PREDICTED: target of EGR1 protein 1 isoform 4 [Ovis aries]
Length = 524
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 307 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 366
Q + VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QRQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 367 I-DVNY 371
I D Y
Sbjct: 226 IYDTKY 231
>gi|149035577|gb|EDL90258.1| target of EGR1, member 1 (nuclear) (predicted), isoform CRA_j
[Rattus norvegicus]
Length = 431
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 307 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 366
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 96 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 152
Query: 367 I-DVNY 371
I D Y
Sbjct: 153 IYDTKY 158
>gi|426215402|ref|XP_004001961.1| PREDICTED: target of EGR1 protein 1 isoform 1 [Ovis aries]
Length = 510
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 307 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 366
Q + VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QRQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 367 I-DVNY 371
I D Y
Sbjct: 226 IYDTKY 231
>gi|149035575|gb|EDL90256.1| target of EGR1, member 1 (nuclear) (predicted), isoform CRA_h
[Rattus norvegicus]
Length = 169
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 307 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQ- 365
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 42 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 98
Query: 366 VIDVNY 371
+ D Y
Sbjct: 99 IYDTKY 104
>gi|426215410|ref|XP_004001965.1| PREDICTED: target of EGR1 protein 1 isoform 5 [Ovis aries]
Length = 430
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 307 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 366
Q + VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 89 QRQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 145
Query: 367 I-DVNY 371
I D Y
Sbjct: 146 IYDTKY 151
>gi|47216610|emb|CAG10908.1| unnamed protein product [Tetraodon nigroviridis]
Length = 477
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 17/153 (11%)
Query: 324 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVI-DVNYLLKDIGPVKKM 382
++KPLV HN L D F++ F A LP + F L FP I D Y +
Sbjct: 157 AKKPLVLHNGLIDMVFLYQSFYAHLPERLATFTADLSQMFPAGIYDTKYACE-------- 208
Query: 383 TNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSIL--KITPDA 440
+ +YL+ + ++E A + H H ++ CQ + + + ++ P+A
Sbjct: 209 FELRLAASYLEYA-YKKCKLETSRSAALGQDTPHVH--IEFCQYAAHMSNYVDYRVCPEA 265
Query: 441 IESSDDFLASAINRYANIFYSLPGSSQEPTNEE 473
++ + +A+ R + F P Q P + +
Sbjct: 266 SPAAGE---TALCRQFSAFGWCPNGGQCPLSHD 295
>gi|167525212|ref|XP_001746941.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774721|gb|EDQ88348.1| predicted protein [Monosiga brevicollis MX1]
Length = 977
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 315 REVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
R V + + S P+V HN L D F++ A LP ++ F+ F +VID Y+
Sbjct: 717 RRVFEALIQSTAPIVTHNGLLDLCFLYQHLWADLPATLDVFVADCSQLFGRVIDTKYV 774
>gi|390349856|ref|XP_791390.2| PREDICTED: target of EGR1 protein 1-like [Strongylocentrotus
purpuratus]
Length = 549
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 314 FREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP-QVIDVNYL 372
R + + I AS+KPL HN L D F++ LPP+ +FI L + +ID Y+
Sbjct: 160 LRLLFNNILASKKPLTLHNGLVDLVFLYQNLYTDLPPSSAQFIADLYEMYSGGIIDTKYV 219
>gi|12855863|dbj|BAB30482.1| unnamed protein product [Mus musculus]
Length = 329
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 307 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQ- 365
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QSQSVRTL--FLELIWA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 366 VIDVNY 371
+ D Y
Sbjct: 226 IYDTKY 231
>gi|387015694|gb|AFJ49966.1| Target of EGR1 protein 1-like [Crotalus adamanteus]
Length = 537
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 307 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP 364
Q++ +R F +++I A +KP++ HN L D F++ F A LP N+ F L FP
Sbjct: 141 QSQSIRTF--FLEIIRA-RKPIILHNGLIDLVFLYQCFYAHLPDNLGTFTADLSEMFP 195
>gi|351696836|gb|EHA99754.1| Target of EGR1 protein 1 [Heterocephalus glaber]
Length = 511
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 318 IDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVI-DVNY 371
++LI A Q+PLV HN L D F++ F A LP ++ F L FP I D Y
Sbjct: 179 LELIRA-QRPLVLHNGLIDLVFLYQNFYAHLPDSLGTFTADLCEMFPAGIYDTKY 232
>gi|213404606|ref|XP_002173075.1| CAF1 family ribonuclease [Schizosaccharomyces japonicus yFS275]
gi|212001122|gb|EEB06782.1| CAF1 family ribonuclease [Schizosaccharomyces japonicus yFS275]
Length = 411
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 81/192 (42%), Gaps = 32/192 (16%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTG--SFSSPWHRVSTFDTPETAYLKAKFAAE 89
I NF E ++ + +D++A + +G S D + + +A+
Sbjct: 3 INANNFKEQFPLLQKCLDEADYVAFDCEFSGLDRTKGESRDGSAADAGDEIMNRLCSSAQ 62
Query: 90 RFQILQFAICPFKLQASKVIA--YPYNFHLFPR--DELKMGMPSYSFTCQTSYLTA--MA 143
F ++Q +C +L +K+ A P+ + P D L+ + CQ T +
Sbjct: 63 TFSVIQLGLCCIRLLPNKLQAECIPFTIDISPALPDCLRC-----TRRCQYDAQTIDFLL 117
Query: 144 KEGFDFNTCIYDGISYLSEAQESTVKVR-------MGNPMAVDHATKSSSSPALSVADTV 196
GFDF + +G+ Y++E +E+ ++ + +G PM +D ++S A+ VA
Sbjct: 118 NHGFDFTNHLANGVRYVTEMEETFIRSQVDAMNKAIGQPMTLDE----TASQAVRVA--- 170
Query: 197 FIERVRSRVKHW 208
R ++ W
Sbjct: 171 -----RKNIQAW 177
>gi|429861252|gb|ELA35948.1| caf1 family ribonuclease [Colletotrichum gloeosporioides Nara gc5]
Length = 619
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 327 PLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
P+V HN D FI+ F LP + EF ++ FP +ID +
Sbjct: 397 PIVGHNQFFDLLFIYQTFFDDLPASCGEFFANIYELFPHIIDTKLM 442
>gi|224006131|ref|XP_002292026.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972545|gb|EED90877.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 848
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 21 QQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSP-----WHRVSTFD 75
Q+ H + +TK+NF L + +H+ ++ +IA+ + TG P + R+S +
Sbjct: 68 QRLTHQHIMVNVTKSNFLPQLQDFLHHLPTATYIAIDEEMTGIQLPPPPGETYRRLSKVE 127
Query: 76 TPETAYLKA-KFAAERFQILQFAICPF 101
P YL + K ER+ ILQ + F
Sbjct: 128 LPGERYLNSLKGVPERYSILQVGVALF 154
>gi|118362492|ref|XP_001014473.1| CAF1 family ribonuclease containing protein [Tetrahymena
thermophila]
gi|89296240|gb|EAR94228.1| CAF1 family ribonuclease containing protein [Tetrahymena
thermophila SB210]
Length = 419
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 313 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVID 368
FR +ID I + P++ HN D ++ KFL LP EF + FP + D
Sbjct: 121 NFRSIIDEIINLKIPIIVHNGFIDILHLYDKFLYNLPEGSQEFKKEINKHFPVIFD 176
>gi|213511206|ref|NP_001133570.1| target of EGR1 protein 1 [Salmo salar]
gi|209154534|gb|ACI33499.1| Target of EGR1 protein 1 [Salmo salar]
Length = 528
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 318 IDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVI-DVNY 371
++L+ A +KPLV HN L D F++ F A LP + F L FP I D Y
Sbjct: 151 VELLRA-RKPLVLHNGLIDMVFLYQCFYAHLPDKLGTFTADLSQMFPAGIYDTKY 204
>gi|380479005|emb|CCF43280.1| hypothetical protein CH063_03036 [Colletotrichum higginsianum]
Length = 632
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 31/59 (52%)
Query: 314 FREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
+ + D + S+ +V HN D F+++ F+ LP +++F+ + FP ++D +
Sbjct: 407 LKTIEDQLKRSRPVIVGHNQFMDLLFLYNTFVDDLPATLDDFLAKIHELFPYILDTKLM 465
>gi|429329996|gb|AEM05832.2| polyprotein [Rosavirus M-7]
Length = 2470
Score = 38.9 bits (89), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 14/123 (11%)
Query: 7 PSPLRIRSFCTKTVQQNPHHWPIKQITKTNFNESL--------------SEIKNHISSSD 52
P+ LR RS T HH+ + K ++L + +++H+ SSD
Sbjct: 116 PAGLRFRSIATTEWNTTDHHFSPIPLLKVKLPQALLADSGPDPSNLFHPTAVRHHLMSSD 175
Query: 53 FIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYP 112
F N F+S V P T A + E F Q++ P +++ +P
Sbjct: 176 FAVTVTVNANPFASGCLLVVALPNPPTVSPDADVSLELFTTSQYSSTPGAYTRAQLTLFP 235
Query: 113 YNF 115
+ F
Sbjct: 236 HQF 238
>gi|83282387|ref|XP_729748.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23488425|gb|EAA21313.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 771
Score = 38.9 bits (89), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 292 DKDLLKRELQTFEFEQNK--RVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLP 349
+KD +++ + E K G R + D I S K L+ HN D I+ F LP
Sbjct: 407 EKDSYNEQIKALQMEIEKINETIGVRLLFDEIIKSNKILIGHNCFYDILHIYQTFYHELP 466
Query: 350 PNMNEFICSLRLAFPQVIDVNYL 372
+++ F FP +D Y+
Sbjct: 467 DSIHAFKRKWTELFPYTVDTKYM 489
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,082,777,988
Number of Sequences: 23463169
Number of extensions: 359202753
Number of successful extensions: 949471
Number of sequences better than 100.0: 426
Number of HSP's better than 100.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 105
Number of HSP's that attempted gapping in prelim test: 948094
Number of HSP's gapped (non-prelim): 812
length of query: 622
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 473
effective length of database: 8,863,183,186
effective search space: 4192285646978
effective search space used: 4192285646978
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 80 (35.4 bits)