BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006991
(622 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A1R|A Chain A, Crystal Structure Of Parn Nuclease Domain
pdb|2A1R|B Chain B, Crystal Structure Of Parn Nuclease Domain
pdb|2A1S|A Chain A, Crystal Structure Of Native Parn Nuclease Domain
pdb|2A1S|B Chain B, Crystal Structure Of Native Parn Nuclease Domain
pdb|2A1S|C Chain C, Crystal Structure Of Native Parn Nuclease Domain
pdb|2A1S|D Chain D, Crystal Structure Of Native Parn Nuclease Domain
Length = 430
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 98/384 (25%), Positives = 176/384 (45%), Gaps = 35/384 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN +GI YL++ +E ++ + + ++++ + ALS V
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYD-----EKRSQANGAGALSY------------VS 163
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 266
+ C + + + + + + + Q ++ ++ C+ Q +L+ + L
Sbjct: 164 PNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTL----SW 219
Query: 267 LVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISA 323
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I+
Sbjct: 220 KYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIAN 279
Query: 324 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMT 383
S K ++ HN L D +F PLP +++EF FP+++D L+ P K +
Sbjct: 280 SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQPFKDII 338
Query: 384 NISATIAYLKNRF----FAPIEME 403
N + ++A L+ R F P ++E
Sbjct: 339 N-NTSLAELEKRLKETPFNPPKVE 361
>pdb|3D45|A Chain A, Crystal Structure Of Mouse Parn In Complex With M7gpppg
pdb|3D45|B Chain B, Crystal Structure Of Mouse Parn In Complex With M7gpppg
Length = 507
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 99/386 (25%), Positives = 177/386 (45%), Gaps = 46/386 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSP--WHRVSTFDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P S FDTPE Y K K +
Sbjct: 4 EIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHS 63
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK + +NF++FP+ P F CQ+S + +A +G
Sbjct: 64 MDFLLFQFGLCAFKYDHTDSKHVTKSFNFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQG 122
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTV--FIERVRSR 204
FDFN GI YL++ +E ++ + + + + + +++ + FI++V +
Sbjct: 123 FDFNKVFCSGIPYLNQEEERQLREQFDEKRSQANGAGALAKCPVTIPEDQKKFIDQVIEK 182
Query: 205 VKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFS 264
++ + L E+ + S+ +D C+ Q +L+ + L
Sbjct: 183 IEDF-----------------------LQSEE---KRSLELDPCTGFQRKLIYQTL---- 212
Query: 265 DVLVPLIIPAKGGGT-QAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLI 321
P I + T + R ++ S ++++ +RE + + EQ + GF VI I
Sbjct: 213 SWKYPKGIHVETLETDKKERHIVISKVDEEERKRREQEKYTKEQEELNDAVGFSRVIHAI 272
Query: 322 SASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKK 381
+ S K +V HN L D +F PLP ++NEF FP+++D L+ P K
Sbjct: 273 ANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTK-LMASTQPFKD 331
Query: 382 MTNISATIAYLKNRF----FAPIEME 403
+ N + ++A L+ R F P ++E
Sbjct: 332 IIN-NTSLAELEKRLKETPFDPPKVE 356
>pdb|1N8N|A Chain A, Crystal Structure Of The Au3+ Complex Of Apha Class B
Acid PhosphatasePHOSPHOTRANSFERASE FROM E. COLI AT 1.69
A RESOLUTION
pdb|1N9K|A Chain A, Crystal Structure Of The Bromide Adduct Of Apha Class B
Acid PhosphatasePHOSPHOTRANSFERASE FROM E. COLI AT 2.2
A RESOLUTION
pdb|1N9K|B Chain B, Crystal Structure Of The Bromide Adduct Of Apha Class B
Acid PhosphatasePHOSPHOTRANSFERASE FROM E. COLI AT 2.2
A RESOLUTION
pdb|1RMQ|A Chain A, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE With Osmiate Mimicking
The Catalytic Intermediate
pdb|1RMQ|B Chain B, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE With Osmiate Mimicking
The Catalytic Intermediate
pdb|1RMT|A Chain A, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE Complexed With Adenosine.
pdb|1RMT|B Chain B, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE Complexed With Adenosine.
pdb|1RMT|C Chain C, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE Complexed With Adenosine.
pdb|1RMT|D Chain D, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE Complexed With Adenosine.
pdb|1RMY|A Chain A, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE Ternary Complex With
Deoxycytosine And Phosphate Bound To The Catalytic
Metal
pdb|1RMY|B Chain B, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE Ternary Complex With
Deoxycytosine And Phosphate Bound To The Catalytic
Metal
pdb|2G1A|A Chain A, Crystal Structure Of The Complex Between Apha Class B
Acid PhosphatasePHOSPHOTRANSFERASE
pdb|2G1A|B Chain B, Crystal Structure Of The Complex Between Apha Class B
Acid PhosphatasePHOSPHOTRANSFERASE
pdb|3CZ4|A Chain A, Native Apha Class B Acid PhosphatasePHOSPHOTRANSFERASE
From E. Coli
Length = 212
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 15/81 (18%)
Query: 7 PSPLRIRSFCTKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVS--LQNTGSF 64
PSPL + + +Q P HW S+++I+N ++ +AV + +T F
Sbjct: 3 PSPLNPGTNVARLAEQAPIHW-----------VSVAQIENSLAGRPPMAVGFDIDDTVLF 51
Query: 65 SSP--WHRVSTFDTPETAYLK 83
SSP W TF YLK
Sbjct: 52 SSPGFWRGKKTFSPESEDYLK 72
>pdb|2B82|A Chain A, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE Ternary Complex With
Adenosine And Phosphate Bound To The Catalytic Metal At
1.2 A Resolution
pdb|2B82|B Chain B, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE Ternary Complex With
Adenosine And Phosphate Bound To The Catalytic Metal At
1.2 A Resolution
pdb|2B8J|A Chain A, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE Ternary Complex With
Adenosine And Phosphate At 2 A Resolution
pdb|2B8J|B Chain B, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE Ternary Complex With
Adenosine And Phosphate At 2 A Resolution
pdb|2HF7|A Chain A, Transition State Analogue Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE (ALUMINIUM FLUORIDE
COMPLEX)
pdb|2HF7|B Chain B, Transition State Analogue Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE (ALUMINIUM FLUORIDE
COMPLEX)
Length = 211
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 15/81 (18%)
Query: 7 PSPLRIRSFCTKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVS--LQNTGSF 64
PSPL + + +Q P HW S+++I+N ++ +AV + +T F
Sbjct: 2 PSPLNPGTNVARLAEQAPIHW-----------VSVAQIENSLAGRPPMAVGFDIDDTVLF 50
Query: 65 SSP--WHRVSTFDTPETAYLK 83
SSP W TF YLK
Sbjct: 51 SSPGFWRGKKTFSPESEDYLK 71
>pdb|2HEG|A Chain A, Phospho-Aspartyl Intermediate Analogue Of Apha Class B
Acid PhosphatasePHOSPHOTRANSFERASE
pdb|2HEG|B Chain B, Phospho-Aspartyl Intermediate Analogue Of Apha Class B
Acid PhosphatasePHOSPHOTRANSFERASE
Length = 211
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 15/81 (18%)
Query: 7 PSPLRIRSFCTKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVS--LQNTGSF 64
PSPL + + +Q P HW S+++I+N ++ +AV + +T F
Sbjct: 2 PSPLNPGTNVARLAEQAPIHW-----------VSVAQIENSLAGRPPMAVGFXIDDTVLF 50
Query: 65 SSP--WHRVSTFDTPETAYLK 83
SSP W TF YLK
Sbjct: 51 SSPGFWRGKKTFSPESEDYLK 71
>pdb|3CXB|A Chain A, Crystal Structure Of Sifa And Skip
pdb|3HW2|A Chain A, Crystal Structure Of The Sifa-skip(ph) Complex
Length = 336
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 398 APIEMEIPNQANENEG-KIHGHNVVKICQLFGKLCSILKITPDAIESSDDFLASAINRYA 456
A I + I +Q ENE +I + C++ G L ++K PD ++S A RY+
Sbjct: 94 ATIILRIMDQNEENELLRITQNTDTFSCEVMGNLYFLMKDRPDILKSHPQMTAMIKRRYS 153
Query: 457 NIF-YSLPGS 465
I Y LP +
Sbjct: 154 EIVDYPLPST 163
>pdb|3MR1|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|C Chain C, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|D Chain D, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
Length = 252
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 316 EVIDLISASQKPLVAHNSLNDF--TFIHSKFLAPLPPNMNEFICSLRLAFPQVI 367
E +D I+ KP V NSLND FI S P P N F S+ + V+
Sbjct: 26 ETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNYKGFPKSICTSINHVV 79
>pdb|3MX6|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
pdb|3MX6|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
Length = 262
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 316 EVIDLISASQKPLVAHNSLNDF--TFIHSKFLAPLPPNMNEFICSLRLAFPQVI 367
E +D I+ KP V NSLND FI S P P N F S+ + V+
Sbjct: 26 ETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNYKGFPKSICTSINHVV 79
>pdb|2VFH|A Chain A, Crystal Structure Of The F96w Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase Complexed With 3-
Phosphoglycerate
pdb|2VFH|B Chain B, Crystal Structure Of The F96w Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase Complexed With 3-
Phosphoglycerate
Length = 248
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 205 VKHWKNAC----TDSDI--KTEAALVTSLRKIVLGGEQFGSRP-SMTIDVCSERQVQLVL 257
+ HW+ TD D+ K +A+L +L+ +V GE R + TI+V + +QV+ +
Sbjct: 93 IGHWERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVIT-KQVKAFV 151
Query: 258 KMLEDFSDVLV 268
++++F +V++
Sbjct: 152 DLIDNFDNVIL 162
>pdb|1VGA|A Chain A, Structures Of Unligated And Inhibitor Complexes Of W168f
Mutant Of Triosephosphate Isomerase From Plasmodium
Falciparum
pdb|1VGA|B Chain B, Structures Of Unligated And Inhibitor Complexes Of W168f
Mutant Of Triosephosphate Isomerase From Plasmodium
Falciparum
pdb|1VGA|C Chain C, Structures Of Unligated And Inhibitor Complexes Of W168f
Mutant Of Triosephosphate Isomerase From Plasmodium
Falciparum
pdb|1VGA|D Chain D, Structures Of Unligated And Inhibitor Complexes Of W168f
Mutant Of Triosephosphate Isomerase From Plasmodium
Falciparum
pdb|1WOA|A Chain A, Structure Of The Loop6 Hinge Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase, W168f, Complexed
With Glycerol-2-Phosphate
pdb|1WOA|B Chain B, Structure Of The Loop6 Hinge Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase, W168f, Complexed
With Glycerol-2-Phosphate
pdb|1WOA|C Chain C, Structure Of The Loop6 Hinge Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase, W168f, Complexed
With Glycerol-2-Phosphate
pdb|1WOA|D Chain D, Structure Of The Loop6 Hinge Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase, W168f, Complexed
With Glycerol-2-Phosphate
pdb|1WOB|A Chain A, Structure Of A Loop6 Hinge Mutant Of Plasmodium Falciparum
Triosephosphate Isomerase, W168f, Complexed To Sulfate
pdb|1WOB|B Chain B, Structure Of A Loop6 Hinge Mutant Of Plasmodium Falciparum
Triosephosphate Isomerase, W168f, Complexed To Sulfate
pdb|1WOB|C Chain C, Structure Of A Loop6 Hinge Mutant Of Plasmodium Falciparum
Triosephosphate Isomerase, W168f, Complexed To Sulfate
pdb|1WOB|D Chain D, Structure Of A Loop6 Hinge Mutant Of Plasmodium Falciparum
Triosephosphate Isomerase, W168f, Complexed To Sulfate
Length = 248
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 213 TDSDI--KTEAALVTSLRKIVLGGEQFGSRP-SMTIDVCSERQVQLVLKMLEDFSDVLV- 268
TD D+ K +A+L +L+ +V GE R + TI+V + +QV+ + ++++F +V++
Sbjct: 105 TDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVIT-KQVKAFVDLIDNFDNVILV 163
Query: 269 --PLIIPAKG 276
PL G
Sbjct: 164 YEPLFAIGTG 173
>pdb|3PSW|A Chain A, Structure Of E97q Mutant Of Tim From Plasmodium Falciparum
pdb|3PSW|B Chain B, Structure Of E97q Mutant Of Tim From Plasmodium Falciparum
Length = 248
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 213 TDSDI--KTEAALVTSLRKIVLGGEQFGSRP-SMTIDVCSERQVQLVLKMLEDFSDVLV 268
TD D+ K +A+L +L+ +V GE R + TI+V + +QV+ + ++++F +V++
Sbjct: 105 TDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVIT-KQVKAFVDLIDNFDNVIL 162
>pdb|3PWA|A Chain A, Structure Of C126a Mutant Of Plasmodium Falciparum
Triosephosphate Isomerase
pdb|3PWA|B Chain B, Structure Of C126a Mutant Of Plasmodium Falciparum
Triosephosphate Isomerase
Length = 248
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 213 TDSDI--KTEAALVTSLRKIVLGGEQFGSRP-SMTIDVCSERQVQLVLKMLEDFSDVLV 268
TD D+ K +A+L +L+ +V GE R + TI+V + +QV+ + ++++F +V++
Sbjct: 105 TDEDVREKLQASLKNNLKAVVAFGESLEQREQNKTIEVIT-KQVKAFVDLIDNFDNVIL 162
>pdb|2VFF|A Chain A, Crystal Structure Of The F96h Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase
pdb|2VFF|B Chain B, Crystal Structure Of The F96h Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase
pdb|2VFG|A Chain A, Crystal Structure Of The F96h Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase With 3-
Phosphoglycerate Bound At The Dimer Interface
pdb|2VFG|B Chain B, Crystal Structure Of The F96h Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase With 3-
Phosphoglycerate Bound At The Dimer Interface
pdb|2VFG|C Chain C, Crystal Structure Of The F96h Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase With 3-
Phosphoglycerate Bound At The Dimer Interface
pdb|2VFG|D Chain D, Crystal Structure Of The F96h Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase With 3-
Phosphoglycerate Bound At The Dimer Interface
Length = 248
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 213 TDSDI--KTEAALVTSLRKIVLGGEQFGSRP-SMTIDVCSERQVQLVLKMLEDFSDVLV 268
TD D+ K +A+L +L+ +V GE R + TI+V + +QV+ + ++++F +V++
Sbjct: 105 TDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVIT-KQVKAFVDLIDNFDNVIL 162
>pdb|1YDV|A Chain A, Triosephosphate Isomerase (Tim)
pdb|1YDV|B Chain B, Triosephosphate Isomerase (Tim)
pdb|1M7O|A Chain A, Plasmodium Falciparum Triosephosphate Isomerase (Pftim)
Compled To Substrate Analog 3-Phosphoglycerate (3pg)
pdb|1M7O|B Chain B, Plasmodium Falciparum Triosephosphate Isomerase (Pftim)
Compled To Substrate Analog 3-Phosphoglycerate (3pg)
pdb|1M7P|A Chain A, Plasmodium Falciparum Triosephosphate Isomerase (Pftim)
Compled To Substrate Analog Glycerol-3-Phosphate (G3p).
pdb|1M7P|B Chain B, Plasmodium Falciparum Triosephosphate Isomerase (Pftim)
Compled To Substrate Analog Glycerol-3-Phosphate (G3p).
pdb|1LYX|A Chain A, Plasmodium Falciparum Triosephosphate Isomerase (Pftim)-
Phosphoglycolate Complex
pdb|1LZO|A Chain A, Plasmodium Falciparum Triosephosphate Isomerase-
Phosphoglycolate Complex
pdb|1LZO|B Chain B, Plasmodium Falciparum Triosephosphate Isomerase-
Phosphoglycolate Complex
pdb|1LZO|C Chain C, Plasmodium Falciparum Triosephosphate Isomerase-
Phosphoglycolate Complex
pdb|1LZO|D Chain D, Plasmodium Falciparum Triosephosphate Isomerase-
Phosphoglycolate Complex
pdb|1O5X|A Chain A, Plasmodium Falciparum Tim Complexed To 2-Phosphoglycerate
pdb|1O5X|B Chain B, Plasmodium Falciparum Tim Complexed To 2-Phosphoglycerate
pdb|2VFI|A Chain A, Crystal Structure Of The Plasmodium Falciparum
Triosephosphate Isomerase In The Loop Closed State With
3- Phosphoglycerate Bound At The Active Site And
Interface
pdb|2VFI|B Chain B, Crystal Structure Of The Plasmodium Falciparum
Triosephosphate Isomerase In The Loop Closed State With
3- Phosphoglycerate Bound At The Active Site And
Interface
Length = 248
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 213 TDSDI--KTEAALVTSLRKIVLGGEQFGSRP-SMTIDVCSERQVQLVLKMLEDFSDVLV 268
TD D+ K +A+L +L+ +V GE R + TI+V + +QV+ + ++++F +V++
Sbjct: 105 TDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVIT-KQVKAFVDLIDNFDNVIL 162
>pdb|2VFD|A Chain A, Crystal Structure Of The F96s Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase
pdb|2VFD|B Chain B, Crystal Structure Of The F96s Mutant Of Plasmodium
Falciparum Triosephosphate Isomerase
pdb|2VFE|A Chain A, Crystal Structure Of F96s Mutant Of Plasmodium Falciparum
Triosephosphate Isomerase With 3-Phosphoglycerate Bound
At The Dimer Interface
pdb|2VFE|B Chain B, Crystal Structure Of F96s Mutant Of Plasmodium Falciparum
Triosephosphate Isomerase With 3-Phosphoglycerate Bound
At The Dimer Interface
Length = 248
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 213 TDSDI--KTEAALVTSLRKIVLGGEQFGSRP-SMTIDVCSERQVQLVLKMLEDFSDVLV 268
TD D+ K +A+L +L+ +V GE R + TI+V + +QV+ + ++++F +V++
Sbjct: 105 TDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVIT-KQVKAFVDLIDNFDNVIL 162
>pdb|3PSV|A Chain A, Structure Of E97d Mutant Of Tim From Plasmodium Falciparum
pdb|3PSV|B Chain B, Structure Of E97d Mutant Of Tim From Plasmodium Falciparum
Length = 248
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 213 TDSDI--KTEAALVTSLRKIVLGGEQFGSRP-SMTIDVCSERQVQLVLKMLEDFSDVLV 268
TD D+ K +A+L +L+ +V GE R + TI+V + +QV+ + ++++F +V++
Sbjct: 105 TDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVIT-KQVKAFVDLIDNFDNVIL 162
>pdb|1ZB7|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type G Light
Chain
Length = 455
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 490 VFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSK 549
+ ++G +S +M+ H +E F RM+ R C P N F NV +K
Sbjct: 158 LIIFGPGPVLSDNFTDSMIMNGHSPISEGFGARMMIRFC-------PSCLNVFNNVQENK 210
Query: 550 AVS 552
S
Sbjct: 211 DTS 213
>pdb|3PVF|A Chain A, Structure Of C126s Mutant Of Plasmodium Falciparum
Triosephosphate Isomerase Complexed With Pga
pdb|3PY2|A Chain A, Structure Of C126s Mutant Of Plasmodium Falciparum
Triosephosphate Isomerase
pdb|3PY2|B Chain B, Structure Of C126s Mutant Of Plasmodium Falciparum
Triosephosphate Isomerase
Length = 248
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 213 TDSDI--KTEAALVTSLRKIVLGGEQFGSRP-SMTIDVCSERQVQLVLKMLEDFSDVLV 268
TD D+ K +A+L +L+ +V GE R + TI+V + +QV+ + ++++F +V++
Sbjct: 105 TDEDVREKLQASLKNNLKAVVSFGESLEQREQNKTIEVIT-KQVKAFVDLIDNFDNVIL 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,370,433
Number of Sequences: 62578
Number of extensions: 685357
Number of successful extensions: 1676
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1666
Number of HSP's gapped (non-prelim): 21
length of query: 622
length of database: 14,973,337
effective HSP length: 105
effective length of query: 517
effective length of database: 8,402,647
effective search space: 4344168499
effective search space used: 4344168499
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)