BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006991
(622 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W4C3|PARNL_ARATH Poly(A)-specific ribonuclease PARN-like OS=Arabidopsis thaliana
GN=At3g25430 PE=2 SV=1
Length = 618
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/613 (55%), Positives = 452/613 (73%), Gaps = 17/613 (2%)
Query: 17 TKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDT 76
TKT+ Q W +KQ+ K+NF+ +L EI+ I SSDFIA+SLQNTGS+++ WHRVS DT
Sbjct: 16 TKTLNQG--RWSVKQVKKSNFHVTLDEIRTSIDSSDFIALSLQNTGSYAAAWHRVSAIDT 73
Query: 77 PETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQT 136
P+T+YLKAK+AAER+QILQFA+CPF LQ SK+ +PYNFHLFPRDELK GMPSYSF+CQ
Sbjct: 74 PQTSYLKAKYAAERYQILQFALCPFSLQGSKLTVHPYNFHLFPRDELKCGMPSYSFSCQA 133
Query: 137 SYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTV 196
S LTAMA+EGFDFN CIY+GISYLS AQES K NP+ D T SSSPA +VADTV
Sbjct: 134 SRLTAMAREGFDFNICIYEGISYLSRAQESASKFLSENPILADSVT-VSSSPA-TVADTV 191
Query: 197 FIERVRSRVKHWKNACTDSDIKT-EAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQL 255
F+ R+RSRVK+W+ +C DS KT + LV+SLR++VLG EQ+GSR +TIDVCSERQVQL
Sbjct: 192 FVGRIRSRVKNWRQSCIDSGSKTGDDDLVSSLRRLVLGSEQYGSRLCLTIDVCSERQVQL 251
Query: 256 VLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFR 315
+L+ML +FSD +VPL++ +K GTQAVR V SS EDKDL KREL+ E E+N+RVRGFR
Sbjct: 252 ILEMLTEFSDDVVPLLVASKSRGTQAVRTVFMSSKEDKDLFKRELKDLEKEENRRVRGFR 311
Query: 316 EVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKD 375
EV+D IS+SQKP+V+ N L+DFT IH+KFL PLP N+++F SL AFP V+D++ +K+
Sbjct: 312 EVVDFISSSQKPVVSQNYLSDFTSIHAKFLGPLPSNVDDFSSSLSSAFPNVVDLSQFMKE 371
Query: 376 IGPVKKMTNISATIAYLKNRFFAPIEMEIPNQA---NENEG-KIHGHNVVKICQLFGKLC 431
I P+ ++N+ A ++ L NRFFAP+++E+ NQ +EG + HG N V I QLF KLC
Sbjct: 372 ISPLSNISNLPAAMSSL-NRFFAPVDVEVANQGCPVKLDEGHQSHGQNAVMISQLFAKLC 430
Query: 432 SILKITPDAIESSDDFLASAINRYANIFYSLPGSSQEPTNEEIRGWTNDKRKVSCEDVVF 491
+I K I+S++DF A A + +AN S+ S+ +E ++ W+ + R+VS E++VF
Sbjct: 431 TIQKSDLSTIQSNEDFQALASDEHAN---SVTSCSKNAGDENVKVWSKNSRRVSSENLVF 487
Query: 492 LWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTF-KNVMNSKA 550
+WG ++++A LKN+LQ SH VFA F+V+ +DRS AI+VF + G S TF V N +
Sbjct: 488 IWGLGKKMTAAKLKNVLQKSHPVFAREFDVKYIDRSSAILVFWESGPSETFLSAVNNEEQ 547
Query: 551 VSGPLREMVSDGLKAAGYETYQRVCSSGLWESALADALDKTLASHNCLSEAAYETKQSEI 610
+ G LREMV++GL+ AGYETY+R C G WE+ LA++LDK L S + ++ +TK SEI
Sbjct: 548 LDGSLREMVAEGLRGAGYETYKRACRLGFWEADLAESLDKALESSD--TDPDSDTKPSEI 605
Query: 611 YLSNEL-INLAEL 622
SNEL IN EL
Sbjct: 606 DWSNELAINFDEL 618
>sp|Q9LG26|PARN_ARATH Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana GN=PARN
PE=1 SV=2
Length = 689
Score = 231 bits (589), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 173/653 (26%), Positives = 321/653 (49%), Gaps = 75/653 (11%)
Query: 27 WPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKF 86
+P+K +T++NF +L+++++ + ++DF+A+ L+ TG S+PW FD + YLK K
Sbjct: 36 FPLKHVTRSNFETTLNDLRSLVKAADFVAIDLEMTGVTSAPWRDSLEFDRYDVRYLKVKD 95
Query: 87 AAERFQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
+AE+F ++QF +CPF+ + ++YP+NF +FPR EL P++ F CQT+ + +AK
Sbjct: 96 SAEKFAVVQFGVCPFRWDSRTQSFVSYPHNFFVFPRQELTFDPPAHEFLCQTTSMDFLAK 155
Query: 145 EGFDFNTCIYDGISYLS--EAQESTVKVRM-GNPMAVDHATKSSSSPALSVADTVFIERV 201
FDFNTCI++GISYLS E +E++ +++M +D + ++ + +AD +F R+
Sbjct: 156 YQFDFNTCIHEGISYLSRREEEEASKRLKMLHGEDGIDSSGETEELKLVRLADVLFAARM 215
Query: 202 RSRVKHWKNACTD-SDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKML 260
+ W++ + +E +++ + RP++++ + Q++++ +L
Sbjct: 216 EKLLNEWRSGLLHGGNASSEFPRISNGSNQSMETVFHHMRPALSLKGFTSHQLRVLNSVL 275
Query: 261 EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR-------- 312
LV + K ++ + V T SD DK+ L +E + ++ KR+
Sbjct: 276 RKHFGDLVYIHSNDKSSSSRDI-VVYTDSDSDKENLMKEAK----DERKRLAERKIQSAI 330
Query: 313 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
GFR+VIDL+++ +K +V HN D ++SKF+ PLP +F+ S+ FP ++D L
Sbjct: 331 GFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINSHFPYIVDTKIL 390
Query: 373 LKDIGPV--KKMTNIS-------------------ATIAYLKNRFFAPIEMEIPNQANEN 411
L ++ P+ ++M S ++ ++L+ R +E++ +N N
Sbjct: 391 L-NVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEIDNVRCSNWN 449
Query: 412 EGKIH--GHNVVKICQLFGKLCSILKITPDAIESSDDFLAS-AINRYANIFYSLPGSSQE 468
G H G++ +F + C+ L DDF + + +Y N Y L + +
Sbjct: 450 AGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDDFAQNEKLEKYINRLY-LSWTRGD 508
Query: 469 PTNEEIRGWTNDKRKVS---CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAF------ 519
+ D +VS E++V +W F ++ A +G E +AF
Sbjct: 509 IIDLRTGHSNADNWRVSKFKYENIVLIWNFPRKLKA-------RGIKECICKAFGSASVT 561
Query: 520 NVRMVDRSCAIVVFGKPGLSNTF---KNVMNSK----AVSGPLREMVSDG-LKAAGYETY 571
+V VD S V+F L F K + S +V PL +++ G AA YE Y
Sbjct: 562 SVYHVDDSAVFVLFKNSELVWDFLALKRQLESSDGPVSVLHPLSKILEGGNTGAADYEAY 621
Query: 572 QRVCSSGLWESALADALD------KTLASHNCLSEAAYETKQSEIYLSNELIN 618
+ +CSS + E +D + +T + C +E E + + +++LI+
Sbjct: 622 KEICSSHVSEVMFSDQAETVGVKSRTRPNAQCETETREENTVTVTHKASDLID 674
>sp|Q90ZA1|PARN_XENLA Poly(A)-specific ribonuclease PARN OS=Xenopus laevis GN=parn PE=1
SV=1
Length = 631
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 101/384 (26%), Positives = 178/384 (46%), Gaps = 54/384 (14%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST----FDTPETAYLKAKF 86
+IT++NF ++L ++ I +DF+A+ + +G P VST FDTPE Y K K
Sbjct: 2 EITRSNFKDTLPKVYKAIEEADFLAIDGEFSGISDGP--SVSTLTNGFDTPEERYTKLKK 59
Query: 87 AAERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
+ F + QF +C F +K + +NF++FP+ P F CQ+S + +A
Sbjct: 60 HSMEFLLFQFGLCTFNYDNTEAKYLMKSFNFYIFPK-PFNRNSPDKKFVCQSSSIDFLAN 118
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRMGNPMA-------VDHATKSSSSPALSVADTV- 196
+GFDFN +GI YL++ +E ++ + + + + + + +SS +S+ D
Sbjct: 119 QGFDFNKVFRNGIPYLNQEEERVLRDQYEDRRSQSNGASTMSYISPNSSKTPVSIPDEQK 178
Query: 197 -FIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQL 255
FI++V RV+ + L EQ SM ++ C+ Q +L
Sbjct: 179 GFIDKVVERVEDF-----------------------LKNEQ----KSMNVEPCTGYQRKL 211
Query: 256 VLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSS---DEDKDLLKRELQTFEFEQNKRVR 312
+ + L + P I + ++ + S +E++ ++++ Q E E+
Sbjct: 212 IYQTL----NWKYPRGIHVETVESEKKERYIVISKVDEEERKRMEQQKQAKEREELDDAV 267
Query: 313 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
GF +I IS+S K +V HN L D +F LP +NEF FP+V+D L
Sbjct: 268 GFSRIIQAISSSGKLVVGHNMLLDVMHTIHQFFCQLPDELNEFKEVTNCVFPRVLDTK-L 326
Query: 373 LKDIGPVKKMTNISATIAYLKNRF 396
+ P K++ + ++A L+ R
Sbjct: 327 MASTNPFKEII-YNTSLAELEKRL 349
>sp|P69341|PARN_BOVIN Poly(A)-specific ribonuclease PARN OS=Bos taurus GN=PARN PE=1 SV=2
Length = 638
Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 101/393 (25%), Positives = 179/393 (45%), Gaps = 53/393 (13%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPM-------AVDHATKSSSSPALSVAD--TVF 197
FDFN +GI YL++ +E ++ + A+ + + ++S +++ D F
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQSNGAGALSYTSPNTSKCPVTIPDDQKKF 180
Query: 198 IERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVL 257
I++V +++ +L E+ ++ ++ C+ Q +L+
Sbjct: 181 IDQVVEKIED-----------------------LLQSEE---NKNLDLEPCTGFQRKLIY 214
Query: 258 KMLEDFSDVLVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGF 314
+ L P I + T+ R ++ S ++++ +RE Q EQ + GF
Sbjct: 215 QTL----SWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGF 270
Query: 315 REVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLK 374
VI I+ S K ++ HN L D +F PLP ++NEF FP+++D L+
Sbjct: 271 SRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMA 329
Query: 375 DIGPVKKMTNISATIAYLKNRF----FAPIEME 403
P K + N + ++A L+ R F P ++E
Sbjct: 330 STQPFKDIIN-NTSLAELEKRLKETPFNPPKVE 361
>sp|O95453|PARN_HUMAN Poly(A)-specific ribonuclease PARN OS=Homo sapiens GN=PARN PE=1
SV=1
Length = 639
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 98/384 (25%), Positives = 176/384 (45%), Gaps = 35/384 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN +GI YL++ +E ++ + + ++++ + ALS V
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYD-----EKRSQANGAGALSY------------VS 163
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 266
+ C + + + + + + + Q ++ ++ C+ Q +L+ + L
Sbjct: 164 PNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTL----SW 219
Query: 267 LVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISA 323
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I+
Sbjct: 220 KYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIAN 279
Query: 324 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMT 383
S K ++ HN L D +F PLP +++EF FP+++D L+ P K +
Sbjct: 280 SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQPFKDII 338
Query: 384 NISATIAYLKNRF----FAPIEME 403
N + ++A L+ R F P ++E
Sbjct: 339 N-NTSLAELEKRLKETPFNPPKVE 361
>sp|Q5RC51|PARN_PONAB Poly(A)-specific ribonuclease PARN OS=Pongo abelii GN=PARN PE=2
SV=1
Length = 639
Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 98/384 (25%), Positives = 177/384 (46%), Gaps = 35/384 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKCNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSPPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN +GI YL++ +E ++ + + ++++ + ALS V
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYD-----EKRSQANGAGALSY------------VS 163
Query: 207 HWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 266
+ C + + + + + + + Q ++ ++ C+ Q +L+ + L
Sbjct: 164 PNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTL----SW 219
Query: 267 LVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISA 323
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I+
Sbjct: 220 KYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIAN 279
Query: 324 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMT 383
S K ++ HN L D +F PLP +++EF FP+++D L+ P K +
Sbjct: 280 SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQPFKDII 338
Query: 384 NISATIAYLKNRF----FAPIEME 403
N + ++A L+ R F+P ++E
Sbjct: 339 N-NTSLAELEKRLKETPFSPPKVE 361
>sp|Q8VDG3|PARN_MOUSE Poly(A)-specific ribonuclease PARN OS=Mus musculus GN=Parn PE=1
SV=1
Length = 624
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 99/386 (25%), Positives = 177/386 (45%), Gaps = 46/386 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSP--WHRVSTFDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P S FDTPE Y K K +
Sbjct: 2 EIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK + +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCAFKYDHTDSKHVTKSFNFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTV--FIERVRSR 204
FDFN GI YL++ +E ++ + + + + + +++ + FI++V +
Sbjct: 121 FDFNKVFCSGIPYLNQEEERQLREQFDEKRSQANGAGALAKCPVTIPEDQKKFIDQVIEK 180
Query: 205 VKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFS 264
++ + L E+ + S+ +D C+ Q +L+ + L
Sbjct: 181 IEDF-----------------------LQSEE---KRSLELDPCTGFQRKLIYQTLS--- 211
Query: 265 DVLVPLIIPAKGGGT-QAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLI 321
P I + T + R ++ S ++++ +RE + + EQ + GF VI I
Sbjct: 212 -WKYPKGIHVETLETDKKERHIVISKVDEEERKRREQEKYTKEQEELNDAVGFSRVIHAI 270
Query: 322 SASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKK 381
+ S K +V HN L D +F PLP ++NEF FP+++D L+ P K
Sbjct: 271 ANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTK-LMASTQPFKD 329
Query: 382 MTNISATIAYLKNRF----FAPIEME 403
+ N + ++A L+ R F P ++E
Sbjct: 330 IIN-NTSLAELEKRLKETPFDPPKVE 354
>sp|Q8NA58|PNDC1_HUMAN Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
OS=Homo sapiens GN=PNLDC1 PE=2 SV=2
Length = 520
Score = 95.9 bits (237), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 87/320 (27%), Positives = 140/320 (43%), Gaps = 51/320 (15%)
Query: 63 SFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKL---QASKVIAYPYNFHLFP 119
+ S P ++S FD P YLK + + ++F + Q + F +A+K IA+ NF+LFP
Sbjct: 26 NLSGP-QQISLFDLPSEWYLKTRQSVQQFTVCQIGLSVFSAIEGEANKYIAHSCNFYLFP 84
Query: 120 RDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVK--VRMGNPMA 177
G+ F+ Q S + + + GF++N + +GI Y++E QE ++ + GN
Sbjct: 85 T---TFGILDSEFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQEKKIRHDILTGN--- 138
Query: 178 VDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQF 237
+ SSP D I+ V V W + D T + G + F
Sbjct: 139 ----WRVRSSP-----DKDQIKVVIDEVTRWLELAKEGDWMTLPGIT--------GFQAF 181
Query: 238 GSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLL 296
+VQLVL+ L + VL + K Q R L ++ D++
Sbjct: 182 --------------EVQLVLRQALPNIWTVLKDEGVVVKKVSKQH-RWYLQNTSCDRESC 226
Query: 297 KRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFI 356
+E RGF ++ +QKPLV HN + D +H KF PLP + ++F
Sbjct: 227 WKENILLS------ARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFK 280
Query: 357 CSLRLAFPQVIDVNYLLKDI 376
++ FP +ID + KDI
Sbjct: 281 QNIHSLFPVLIDTKSVTKDI 300
>sp|Q5R6R6|PNDC1_PONAB Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
OS=Pongo abelii GN=PNLDC1 PE=2 SV=1
Length = 520
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 137/318 (43%), Gaps = 47/318 (14%)
Query: 63 SFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKL---QASKVIAYPYNFHLFP 119
+ S P ++S FD P YLK + + ++F I Q + F +A+K A+ NF+LFP
Sbjct: 26 NLSGP-QQISLFDLPSEWYLKTRQSVQQFTICQIGLSVFSAIEGEANKYTAHSCNFYLFP 84
Query: 120 RDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVD 179
G+ F+ Q S + + + GF++N + +GI Y++E QE ++
Sbjct: 85 T---TFGILDSEFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQEKKIR---------- 131
Query: 180 HATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGS 239
H + + S D I+ V V W + + D T + G + F
Sbjct: 132 HDILTGNWRVRSSPDKDQIKVVIDEVTRWLDLAKEGDWMTLPGIT--------GFQAF-- 181
Query: 240 RPSMTIDVCSERQVQLVLKM-LEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKR 298
+VQLVL+ L + VL + K Q R L ++ D++ +
Sbjct: 182 ------------EVQLVLRQALPNIWTVLKDEGVVVKKVSKQH-RWYLQNTSCDRESCWK 228
Query: 299 ELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICS 358
E RGF ++ +QKPLV HN + D +H KF PLP + ++F +
Sbjct: 229 ENILLS------ARGFSAFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQN 282
Query: 359 LRLAFPQVIDVNYLLKDI 376
+ FP +ID + KDI
Sbjct: 283 IHSLFPVLIDTKSVTKDI 300
>sp|Q7ZU92|PARN_DANRE Poly(A)-specific ribonuclease PARN OS=Danio rerio GN=parn PE=1 SV=2
Length = 660
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 5/143 (3%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
++T+ NF E L E+ N + +DFI++ + TG P T DTPE Y K + +
Sbjct: 2 EVTRQNFKEVLPEVCNAVQEADFISIDGEFTGISDGPSVSALTNGLDTPEERYTKLRKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C F+ S I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MNFLLFQFGVCTFRYDQNQSTYITKAFNFYIFPK-PFSRTSPDIKFICQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVK 169
FDFN GI YL++ +E ++
Sbjct: 121 FDFNKVFRSGIPYLNQEEECQLR 143
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 313 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
GF VI IS S K +V HN L D +F PLP +++F FP+++D L
Sbjct: 267 GFSRVIRAISKSGKLVVGHNMLLDVMHTIHQFCGPLPEELDDFKEVAMTVFPRLLDTK-L 325
Query: 373 LKDIGPVKKM---TNISATIAYLKNRFFAPIEMEIP 405
+ P K++ T+++ L+ + F P E P
Sbjct: 326 MASTQPFKEIIHNTSLAELHKQLRQKPFRPPTTECP 361
>sp|O94386|YGS9_SCHPO Uncharacterized protein C29A10.09c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC29A10.09c PE=3 SV=1
Length = 427
Score = 72.8 bits (177), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 76/345 (22%), Positives = 146/345 (42%), Gaps = 29/345 (8%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
+I NF E+L E++ H+ S+ ++++ + +G ++ +T + Y + ++ R
Sbjct: 2 EIHGKNFLETLKELEKHVDSAHYVSIDCEFSGLLRD--FNLNNKNTLQDRYELLRKSSIR 59
Query: 91 FQILQFAICPFKLQAS-KVIAYPYNFHLFP--RDELKMGMPSYSFTCQTSYLTAMAKEGF 147
+ ILQ I LQ + K P N ++ P +DEL + F + S + + ++GF
Sbjct: 60 YTILQIGITFIYLQNNGKSSCIPVNINVSPLVKDELHLKR---DFCSEASSIKFLIQQGF 116
Query: 148 DFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKH 207
DFN + +G+ YLS +E + ++ + +T +S L D + R+++K+
Sbjct: 117 DFNKQLTEGVPYLSRIEERNLIDKVN-----ERSTDDLTSSILDACDEEILVDARNQIKN 171
Query: 208 WKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVL 267
W ++ + TS R I + T+ +R V K +E+
Sbjct: 172 WLSSELSHSTSKYLNITTSNRFIRKAIQSLVKIEFPTLKSYPKRTFLQVRKAIEN----- 226
Query: 268 VPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKP 327
TQ + + S+ +D+ +L K+ G R + D I +K
Sbjct: 227 ---------STTQC--SATSKSELKEDIASDQLILNNLNLIKQNVGLRHLWDYILKKKKS 275
Query: 328 LVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 372
+V HN + D ++ S F +P + EF +F + D L
Sbjct: 276 VVCHNGMADLVYLFSLFEGKVPETILEFSELCLSSFKSIYDTKLL 320
>sp|Q9D2E2|TOE1_MOUSE Target of EGR1 protein 1 OS=Mus musculus GN=Toe1 PE=2 SV=1
Length = 511
Score = 42.4 bits (98), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 307 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 366
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 367 I-DVNY 371
I D Y
Sbjct: 226 IYDTKY 231
>sp|Q17QN2|TOE1_BOVIN Target of EGR1 protein 1 OS=Bos taurus GN=TOE1 PE=2 SV=1
Length = 524
Score = 41.6 bits (96), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 307 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 366
Q + VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QRQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 367 I-DVNY 371
I D Y
Sbjct: 226 IYDTKY 231
>sp|Q5RAR6|TOE1_PONAB Target of EGR1 protein 1 OS=Pongo abelii GN=TOE1 PE=2 SV=1
Length = 510
Score = 39.7 bits (91), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 307 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 366
Q++ VR ++LI A ++PLV HN L D F++ F A LP ++ F L FP
Sbjct: 169 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPESLGTFTADLCEMFPAG 225
Query: 367 I-DVNY 371
I D Y
Sbjct: 226 IYDTKY 231
>sp|Q96GM8|TOE1_HUMAN Target of EGR1 protein 1 OS=Homo sapiens GN=TOE1 PE=1 SV=1
Length = 510
Score = 39.3 bits (90), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 307 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 366
Q++ VR ++LI A ++PLV HN L D F++ F A LP ++ F L FP
Sbjct: 169 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPESLGTFTADLCEMFPAG 225
Query: 367 I-DVNY 371
I D Y
Sbjct: 226 IYDTKY 231
>sp|Q9BTE0|NAT9_HUMAN N-acetyltransferase 9 OS=Homo sapiens GN=NAT9 PE=2 SV=1
Length = 207
Score = 35.0 bits (79), Expect = 2.0, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 18/114 (15%)
Query: 230 IVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFS--DVLVPLIIPA---KGGGTQAVRA 284
IVL E++ ++P T + C V L L LED + ++ V + P+ KG GT+AV A
Sbjct: 68 IVLDAEKWQAQPGATEESCMVGDVNLFLTDLEDLTLGEIEVMIAEPSCRGKGLGTEAVLA 127
Query: 285 VLTSSDEDKDLLK-------------RELQTFEFEQNKRVRGFREVIDLISASQ 325
+L+ L K R Q FEQ F+EV ++ S+
Sbjct: 128 MLSYGVTTLGLTKFEAKIGQGNEPSIRMFQKLHFEQVATSSVFQEVTLRLTVSE 181
>sp|Q038V6|ADDB_LACC3 ATP-dependent helicase/deoxyribonuclease subunit B OS=Lactobacillus
casei (strain ATCC 334) GN=rexB PE=3 SV=1
Length = 1179
Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 549 KAVSGPLREMVSDGLKAAGYETYQRVCSSGLWESALADALDKTLA 593
KAV G R M+SD ++AAG +Q++ S W+ LA TLA
Sbjct: 715 KAVLGSQRAMLSDFVRAAGEAQHQKLPLSRSWQGVLASLKQTTLA 759
>sp|Q8D3D5|OPGH_WIGBR Glucans biosynthesis glucosyltransferase H OS=Wigglesworthia
glossinidia brevipalpis GN=mdoH PE=3 SV=1
Length = 826
Score = 33.9 bits (76), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 8/119 (6%)
Query: 372 LLKDIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLC 431
+++ I M + A R + P+ + E GHN + + F K C
Sbjct: 377 IIQSIPKASGMNTLYARYHQFSTRVYGPLFTAGMHFWQLGESHYWGHNAIIRIKPFIKYC 436
Query: 432 SILKITPDAIES----SDDFLASAINRYAN----IFYSLPGSSQEPTNEEIRGWTNDKR 482
+ + + I S S DF+ +A+ R A I Y +PGS +EP + D+R
Sbjct: 437 VLSPLPGNGIFSGSILSHDFVEAALMRRAGWSVWIAYDIPGSYEEPPPNLLDELKRDRR 495
>sp|Q9P940|TPIS_CANAL Triosephosphate isomerase OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=TPI1 PE=1 SV=3
Length = 248
Score = 33.9 bits (76), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 218 KTEAALVTSLRKIVLGGEQFGSRPS-MTIDVCSERQVQLVLKMLEDFSDVLV 268
KT+ AL T ++ I+ GE R +T+DVC+ RQ+ V K++ D+S+++V
Sbjct: 112 KTKFALDTGVKVILCIGETLEERKGGVTLDVCA-RQLDAVSKIVSDWSNIVV 162
>sp|Q8K4E0|ALMS1_MOUSE Alstrom syndrome protein 1 homolog OS=Mus musculus GN=Alms1 PE=1 SV=2
Length = 3251
Score = 33.1 bits (74), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 327 PLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAF-PQVIDVNYLLKDIG 377
PLV +ND +FI SK + + +C+ R +F +V + Y+ KDIG
Sbjct: 1445 PLVPFRDVNDVSFIRSKKVVCFKESSTTDVCTQRESFVEEVPHIEYVQKDIG 1496
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 216,882,678
Number of Sequences: 539616
Number of extensions: 8662823
Number of successful extensions: 21156
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 21094
Number of HSP's gapped (non-prelim): 36
length of query: 622
length of database: 191,569,459
effective HSP length: 124
effective length of query: 498
effective length of database: 124,657,075
effective search space: 62079223350
effective search space used: 62079223350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)