Query 006991
Match_columns 622
No_of_seqs 202 out of 507
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 14:19:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006991.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006991hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d45_A Poly(A)-specific ribonu 100.0 5E-103 2E-107 870.8 29.4 480 29-550 2-497 (507)
2 2a1r_A Poly(A)-specific ribonu 100.0 3.2E-90 1.1E-94 753.8 24.7 406 30-465 1-426 (430)
3 4gmj_B CCR4-NOT transcription 100.0 1.6E-47 5.5E-52 394.7 16.9 249 26-461 9-261 (285)
4 2p51_A SPCC18.06C protein; DED 100.0 1.2E-44 4.2E-49 376.7 25.0 250 23-461 17-271 (333)
5 2d5r_A CCR4-NOT transcription 100.0 6.7E-45 2.3E-49 368.9 22.3 231 28-435 1-236 (252)
6 1uoc_A POP2; hydrolase, DEDD n 100.0 4E-44 1.4E-48 368.8 22.5 253 26-461 13-284 (289)
7 1whv_A Poly(A)-specific ribonu 99.5 2.5E-14 8.6E-19 123.3 4.6 70 475-550 4-73 (100)
8 3ctr_A Poly(A)-specific ribonu 99.2 6.1E-12 2.1E-16 108.8 5.3 68 484-557 3-72 (101)
9 1ug8_A Poly(A)-specific ribonu 98.7 2.1E-08 7.2E-13 84.8 6.1 73 191-289 6-78 (87)
10 2gui_A DNA polymerase III epsi 96.6 0.0093 3.2E-07 57.0 10.1 97 313-432 81-183 (194)
11 1wlj_A Interferon stimulated g 96.5 0.0075 2.6E-07 57.8 8.8 87 324-437 82-172 (189)
12 2p1j_A POLIII, DNA polymerase 96.2 0.022 7.4E-07 54.3 10.2 93 313-433 78-175 (186)
13 1w0h_A 3'-5' exonuclease ERI1; 96.0 0.012 4E-07 56.6 7.0 85 326-434 106-195 (204)
14 1zbh_A 3'-5' exonuclease ERI1; 95.8 0.023 8E-07 58.5 8.8 85 326-434 174-263 (299)
15 3mxm_B Three prime repair exon 95.6 0.012 4.3E-07 58.7 5.6 84 326-434 119-215 (242)
16 3v9w_A Ribonuclease T; DEDD nu 95.3 0.058 2E-06 53.2 9.4 87 324-436 133-223 (235)
17 2f96_A Ribonuclease T; RNAse, 95.1 0.059 2E-06 52.7 8.6 86 324-435 125-214 (224)
18 3u3y_B Three prime repair exon 94.6 0.054 1.9E-06 56.4 7.2 94 316-434 107-215 (314)
19 1zbu_A ERI-1 homolog, 3'-5' ex 94.3 0.084 2.9E-06 55.7 8.1 106 305-434 194-313 (349)
20 2xri_A ERI1 exoribonuclease 3; 94.2 0.1 3.6E-06 51.1 8.0 85 325-433 117-213 (224)
21 1y97_A Three prime repair exon 93.9 0.11 3.7E-06 51.2 7.4 84 325-434 113-210 (238)
22 3cg7_A CRN-4, cell death-relat 92.8 0.08 2.8E-06 54.8 4.6 99 311-433 92-208 (308)
23 2igi_A Oligoribonuclease; RNAs 92.1 0.64 2.2E-05 43.5 9.7 74 325-434 100-177 (180)
24 2diu_A KIAA0430 protein; struc 91.6 0.28 9.4E-06 42.2 5.7 63 485-550 7-70 (96)
25 2gbz_A Oligoribonuclease; ORN, 90.3 1.6 5.3E-05 41.6 10.5 73 327-434 106-181 (194)
26 2dnp_A RNA-binding protein 14; 89.3 0.67 2.3E-05 37.9 6.1 61 484-549 6-66 (90)
27 1x4c_A Splicing factor, argini 89.2 0.92 3.2E-05 38.6 7.1 63 484-550 12-74 (108)
28 2f96_A Ribonuclease T; RNAse, 89.0 0.61 2.1E-05 45.4 6.6 54 44-120 22-77 (224)
29 3v9w_A Ribonuclease T; DEDD nu 88.1 0.46 1.6E-05 46.6 5.0 58 40-120 26-85 (235)
30 1x5s_A Cold-inducible RNA-bind 86.8 1.3 4.3E-05 37.1 6.4 62 484-549 9-77 (102)
31 1nu4_A U1A RNA binding domain; 86.2 1.1 3.8E-05 37.0 5.6 63 487-549 8-74 (97)
32 2fc8_A NCL protein; structure 86.1 1.1 3.7E-05 37.5 5.6 59 484-549 12-77 (102)
33 2dgx_A KIAA0430 protein; RRM d 85.6 1.5 5.2E-05 36.4 6.2 63 487-549 9-75 (96)
34 2fc9_A NCL protein; structure 84.8 1.2 4.1E-05 37.2 5.2 63 480-549 8-76 (101)
35 2cq0_A Eukaryotic translation 84.5 1.8 6E-05 36.3 6.1 63 483-549 11-80 (103)
36 2cpi_A CCR4-NOT transcription 84.3 2 6.8E-05 36.7 6.5 64 485-549 13-86 (111)
37 2cqc_A Arginine/serine-rich sp 84.1 2.2 7.7E-05 34.8 6.6 63 483-549 11-80 (95)
38 2dgt_A RNA-binding protein 30; 84.0 2.1 7.2E-05 35.0 6.3 61 484-549 7-67 (92)
39 2dgo_A Cytotoxic granule-assoc 83.9 2.5 8.6E-05 36.1 7.0 62 484-549 12-80 (115)
40 2dnm_A SRP46 splicing factor; 83.9 3.7 0.00013 34.2 8.0 62 485-550 11-79 (103)
41 2cq3_A RNA-binding protein 9; 83.8 3.2 0.00011 34.6 7.6 62 484-549 12-78 (103)
42 1x5u_A Splicing factor 3B subu 83.7 1.9 6.3E-05 36.2 6.0 63 483-549 11-80 (105)
43 2a3j_A U1 small nuclear ribonu 83.5 2.3 7.8E-05 37.9 6.7 64 487-550 29-96 (127)
44 3beg_B Splicing factor, argini 82.6 1.9 6.6E-05 37.2 5.8 61 486-550 15-75 (115)
45 2p1j_A POLIII, DNA polymerase 81.8 1.6 5.6E-05 41.1 5.4 48 47-120 8-55 (186)
46 2dgp_A Bruno-like 4, RNA bindi 81.8 2.1 7.3E-05 35.9 5.7 61 485-549 11-78 (106)
47 2ytc_A PRE-mRNA-splicing facto 81.2 2.8 9.6E-05 33.5 6.0 57 486-546 11-68 (85)
48 1wex_A Hypothetical protein (r 81.2 4.2 0.00014 34.7 7.4 59 487-549 15-74 (104)
49 2dnz_A Probable RNA-binding pr 81.0 3.7 0.00013 33.5 6.7 60 486-549 4-70 (95)
50 2igi_A Oligoribonuclease; RNAs 81.0 1.8 6E-05 40.4 5.2 47 50-120 4-50 (180)
51 2e5h_A Zinc finger CCHC-type a 80.9 3.1 0.00011 33.9 6.2 61 485-549 14-81 (94)
52 2dhg_A TRNA selenocysteine ass 80.9 3.3 0.00011 34.5 6.5 62 485-549 7-74 (104)
53 2dgu_A Heterogeneous nuclear r 80.8 3 0.0001 34.9 6.2 58 487-549 11-68 (103)
54 3bs9_A Nucleolysin TIA-1 isofo 80.6 3.2 0.00011 33.2 6.1 59 487-549 6-71 (87)
55 2dnh_A Bruno-like 5, RNA bindi 80.6 5.1 0.00017 33.4 7.6 61 486-550 14-80 (105)
56 2dnq_A RNA-binding protein 4B; 80.0 3.8 0.00013 33.2 6.5 58 487-549 8-65 (90)
57 2d9p_A Polyadenylate-binding p 79.6 4 0.00014 33.9 6.6 60 486-549 14-78 (103)
58 2dgv_A HnRNP M, heterogeneous 79.4 4.1 0.00014 33.0 6.5 60 486-549 7-71 (92)
59 2ywk_A Putative RNA-binding pr 79.1 5.6 0.00019 32.4 7.3 60 486-549 15-80 (95)
60 2div_A TRNA selenocysteine ass 79.1 3.4 0.00011 34.1 5.9 59 487-549 9-75 (99)
61 2cqi_A Nucleolysin TIAR; RNA r 79.0 5.1 0.00018 33.3 7.1 60 486-549 14-78 (103)
62 1wf1_A RNA-binding protein RAL 78.8 10 0.00036 31.8 9.1 58 487-549 27-85 (110)
63 2kxn_B Transformer-2 protein h 78.3 3.4 0.00012 36.5 6.0 62 484-549 43-111 (129)
64 2do4_A Squamous cell carcinoma 78.1 5 0.00017 33.2 6.7 60 486-549 16-81 (100)
65 2cpz_A CUG triplet repeat RNA- 77.9 4.5 0.00015 34.5 6.5 60 486-549 24-90 (115)
66 2khc_A Testis-specific RNP-typ 77.9 4.9 0.00017 34.3 6.8 60 485-548 38-104 (118)
67 2cpj_A Non-POU domain-containi 77.8 5.4 0.00018 33.0 6.8 60 486-549 14-74 (99)
68 2cq1_A PTB-like protein L; RRM 77.7 5.9 0.0002 33.6 7.1 58 487-548 15-73 (101)
69 2qxf_A Exodeoxyribonuclease I; 77.6 2.8 9.7E-05 45.9 6.3 96 316-433 87-200 (482)
70 2cpx_A Hypothetical protein FL 77.4 4.3 0.00015 34.4 6.2 64 486-549 24-90 (115)
71 2do0_A HnRNP M, heterogeneous 77.3 5.5 0.00019 33.7 6.9 60 486-549 14-79 (114)
72 3s7r_A Heterogeneous nuclear r 77.1 6.7 0.00023 31.4 7.0 55 486-544 10-71 (87)
73 2jrs_A RNA-binding protein 39; 76.9 7.6 0.00026 33.0 7.7 60 486-549 25-91 (108)
74 2cph_A RNA binding motif prote 76.9 4.6 0.00016 33.7 6.2 57 486-546 14-78 (107)
75 1why_A Hypothetical protein ri 76.4 5.1 0.00017 33.0 6.2 60 487-550 17-77 (97)
76 2e44_A Insulin-like growth fac 76.4 4.7 0.00016 33.0 6.0 61 485-549 13-77 (96)
77 3ucg_A Polyadenylate-binding p 76.0 5.3 0.00018 32.0 6.2 57 487-548 6-69 (89)
78 1x4e_A RNA binding motif, sing 76.0 5.2 0.00018 31.9 6.0 59 487-549 5-70 (85)
79 3mdf_A Peptidyl-prolyl CIS-tra 75.8 5.5 0.00019 31.6 6.1 60 486-549 6-72 (85)
80 2cqg_A TDP-43, TAR DNA-binding 75.7 6.8 0.00023 32.5 6.9 56 485-544 13-75 (103)
81 1fjc_A Nucleolin RBD2, protein 75.5 2.6 8.8E-05 34.6 4.1 57 486-549 15-76 (96)
82 2la4_A Nuclear and cytoplasmic 75.5 5.5 0.00019 33.0 6.3 60 486-549 26-86 (101)
83 2jvo_A Nucleolar protein 3; nu 75.1 4.9 0.00017 34.3 5.9 59 486-549 30-88 (108)
84 3lqv_A PRE-mRNA branch site pr 75.0 7.3 0.00025 33.0 7.1 60 486-549 7-70 (115)
85 2cqd_A RNA-binding region cont 74.8 4.5 0.00015 34.5 5.7 58 486-547 16-80 (116)
86 3tr8_A Oligoribonuclease; tran 74.7 4.6 0.00016 38.5 6.2 70 324-429 103-176 (186)
87 2la6_A RNA-binding protein FUS 74.7 6.3 0.00022 32.5 6.4 63 483-549 9-86 (99)
88 3r27_A HnRNP L, heterogeneous 74.4 7.9 0.00027 33.1 7.0 59 487-549 21-80 (100)
89 1whw_A Hypothetical protein ri 74.2 4.8 0.00016 33.2 5.5 59 487-549 8-73 (99)
90 2kt5_A RNA and export factor-b 74.2 6.6 0.00022 33.9 6.6 63 483-549 31-99 (124)
91 4a8x_A RNA-binding protein wit 74.1 5.5 0.00019 31.8 5.7 59 487-549 4-70 (88)
92 1sjq_A Polypyrimidine tract-bi 74.1 5.8 0.0002 34.3 6.1 58 487-548 16-74 (105)
93 3ulh_A THO complex subunit 4; 73.8 5.6 0.00019 33.3 5.9 62 484-549 26-93 (107)
94 2xnq_A Nuclear polyadenylated 73.3 8 0.00027 32.1 6.7 59 486-549 21-80 (97)
95 1oo0_B CG8781-PA, drosophila Y 73.3 6.2 0.00021 33.2 6.1 60 486-549 25-91 (110)
96 3pgw_A U1-A; protein-RNA compl 73.2 5.4 0.00019 39.3 6.6 63 487-549 9-75 (282)
97 1u6f_A Tcubp1, RNA-binding pro 72.9 6.8 0.00023 34.5 6.5 60 486-549 41-107 (139)
98 1h2v_Z 20 kDa nuclear CAP bind 72.8 7.5 0.00026 35.0 6.9 60 486-549 38-104 (156)
99 2ad9_A Polypyrimidine tract-bi 72.6 7.3 0.00025 34.3 6.5 58 487-548 31-89 (119)
100 2hzc_A Splicing factor U2AF 65 72.5 5 0.00017 32.1 5.1 62 487-549 6-75 (87)
101 3ex7_B RNA-binding protein 8A; 72.2 5.9 0.0002 34.2 5.8 60 487-550 22-88 (126)
102 2qxf_A Exodeoxyribonuclease I; 72.1 3.9 0.00013 44.8 5.6 49 48-120 6-54 (482)
103 3md1_A Nuclear and cytoplasmic 71.6 7 0.00024 30.8 5.7 56 490-549 4-66 (83)
104 3tr8_A Oligoribonuclease; tran 71.5 4.1 0.00014 38.8 5.0 46 49-118 7-52 (186)
105 2dgs_A DAZ-associated protein 71.5 10 0.00035 31.1 7.0 58 486-548 9-73 (99)
106 1x4a_A Splicing factor, argini 71.3 9.4 0.00032 32.0 6.8 60 486-549 21-84 (109)
107 1owx_A Lupus LA protein, SS-B, 71.0 5 0.00017 35.7 5.1 55 487-548 18-78 (121)
108 1p27_B RNA-binding protein 8A; 70.9 11 0.00038 31.3 7.1 59 487-549 23-88 (106)
109 1uaw_A Mouse-musashi-1; RNP-ty 70.9 5.5 0.00019 31.0 4.9 54 490-547 3-63 (77)
110 2gbz_A Oligoribonuclease; ORN, 70.9 2.8 9.6E-05 39.8 3.7 47 49-120 7-54 (194)
111 2gui_A DNA polymerase III epsi 70.7 3.3 0.00011 38.9 4.1 50 51-120 9-58 (194)
112 1w0h_A 3'-5' exonuclease ERI1; 70.7 4.8 0.00017 38.0 5.3 49 52-120 11-59 (204)
113 1x4g_A Nucleolysin TIAR; struc 70.5 7.8 0.00027 32.6 6.1 60 486-549 24-84 (109)
114 2g4b_A Splicing factor U2AF 65 70.5 14 0.00046 33.1 8.1 63 483-549 90-159 (172)
115 2fy1_A RNA-binding motif prote 70.5 6.4 0.00022 33.9 5.6 59 487-549 7-71 (116)
116 2err_A Ataxin-2-binding protei 70.5 8.8 0.0003 32.5 6.5 61 485-549 27-92 (109)
117 2dh8_A DAZ-associated protein 70.2 12 0.00041 31.1 7.2 56 486-545 15-77 (105)
118 2lea_A Serine/arginine-rich sp 70.1 4.4 0.00015 36.1 4.6 61 485-549 45-112 (135)
119 2cpd_A Apobec-1 stimulating pr 70.0 11 0.00039 30.9 6.9 62 486-550 14-75 (99)
120 2dng_A Eukaryotic translation 70.0 7.7 0.00026 32.2 5.9 58 485-548 13-77 (103)
121 2lxi_A RNA-binding protein 10; 69.9 1.9 6.6E-05 35.6 2.0 55 488-546 2-64 (91)
122 2cqb_A Peptidyl-prolyl CIS-tra 69.8 5.1 0.00017 33.2 4.7 60 486-549 11-77 (102)
123 2hvz_A Splicing factor, argini 69.6 7 0.00024 32.3 5.5 57 490-550 3-61 (101)
124 4fxv_A ELAV-like protein 1; RN 69.4 7.5 0.00026 32.6 5.7 57 489-549 21-84 (99)
125 2ku7_A MLL1 PHD3-CYP33 RRM chi 69.1 9.5 0.00032 33.3 6.6 61 484-548 60-127 (140)
126 2cq4_A RNA binding motif prote 68.9 9.8 0.00034 32.2 6.4 58 487-549 25-89 (114)
127 1x4h_A RNA-binding protein 28; 68.6 8.8 0.0003 32.2 6.0 57 487-547 15-78 (111)
128 2xri_A ERI1 exoribonuclease 3; 68.3 5.6 0.00019 38.6 5.3 47 52-120 32-78 (224)
129 2ek1_A RNA-binding protein 12; 68.1 7.3 0.00025 31.7 5.3 60 486-549 14-80 (95)
130 1x5o_A RNA binding motif, sing 67.1 12 0.00041 31.6 6.6 60 487-550 25-90 (114)
131 2x1f_A MRNA 3'-END-processing 66.9 8.9 0.0003 31.4 5.6 58 488-549 3-67 (96)
132 3u3y_B Three prime repair exon 66.3 5.4 0.00019 41.3 4.9 73 52-161 13-101 (314)
133 2cqh_A IGF-II mRNA-binding pro 66.2 5.3 0.00018 32.6 4.0 58 487-548 8-66 (93)
134 1fxl_A Paraneoplastic encephal 65.9 11 0.00037 33.3 6.4 58 488-549 3-67 (167)
135 1x4d_A Matrin 3; structural ge 65.7 12 0.0004 32.0 6.2 58 487-548 15-74 (102)
136 4f25_A Polyadenylate-binding p 65.6 10 0.00036 32.3 6.0 57 489-549 7-68 (115)
137 1b7f_A Protein (SXL-lethal pro 65.4 13 0.00043 33.1 6.8 61 485-549 87-154 (168)
138 1wi8_A EIF-4B, eukaryotic tran 65.0 9.6 0.00033 31.7 5.5 58 486-549 14-79 (104)
139 1x4f_A Matrin 3; structural ge 64.7 15 0.00052 31.9 6.9 59 486-548 24-84 (112)
140 1x5t_A Splicing factor 3B subu 64.7 6.9 0.00023 31.9 4.4 59 487-549 5-71 (96)
141 2cqp_A RNA-binding protein 12; 63.9 13 0.00044 30.4 6.0 63 485-549 13-80 (98)
142 3s8s_A Histone-lysine N-methyl 63.9 12 0.00041 32.0 6.0 60 487-550 6-72 (110)
143 2e5j_A Methenyltetrahydrofolat 63.7 18 0.00061 29.6 6.9 61 486-549 18-79 (97)
144 2kfn_A Klenow fragment of DNA 63.4 11 0.00038 42.3 7.1 102 317-436 82-195 (605)
145 3p5t_L Cleavage and polyadenyl 63.3 6.9 0.00024 31.8 4.1 56 490-549 4-68 (90)
146 1rk8_A CG8781-PA, CG8781-PA pr 62.9 14 0.00046 33.8 6.5 59 487-549 72-137 (165)
147 2dgw_A Probable RNA-binding pr 62.5 14 0.00048 29.7 5.9 58 485-548 8-71 (91)
148 3md3_A Nuclear and cytoplasmic 62.3 13 0.00045 32.8 6.2 57 489-549 2-64 (166)
149 2kn4_A Immunoglobulin G-bindin 62.3 12 0.00042 33.5 6.0 60 486-549 69-135 (158)
150 1whx_A Hypothetical protein ri 62.2 7.8 0.00027 33.1 4.4 59 487-549 10-69 (111)
151 2dis_A Unnamed protein product 61.9 8.6 0.00029 32.2 4.6 57 487-547 8-73 (109)
152 2yh0_A Splicing factor U2AF 65 61.6 27 0.00092 31.9 8.5 61 485-549 112-179 (198)
153 2kvi_A Nuclear polyadenylated 60.6 14 0.00049 30.2 5.7 58 487-549 10-68 (96)
154 2f3j_A RNA and export factor b 60.6 12 0.0004 35.0 5.7 62 484-549 85-152 (177)
155 2i2y_A Fusion protein consists 60.5 19 0.00065 32.0 7.0 60 486-549 72-133 (150)
156 1fxl_A Paraneoplastic encephal 60.4 17 0.00059 32.0 6.7 62 485-550 86-154 (167)
157 1p1t_A Cleavage stimulation fa 60.3 10 0.00035 31.3 4.8 59 487-549 8-73 (104)
158 1s79_A Lupus LA protein; RRM, 60.2 15 0.00051 31.0 5.8 54 487-544 11-70 (103)
159 2cpf_A RNA binding motif prote 60.0 12 0.00042 30.5 5.2 59 487-549 5-73 (98)
160 2adc_A Polypyrimidine tract-bi 59.7 13 0.00046 35.5 6.2 60 486-549 33-95 (229)
161 2nlw_A Eukaryotic translation 59.5 26 0.00088 29.2 7.2 61 486-550 14-85 (105)
162 1zbh_A 3'-5' exonuclease ERI1; 59.4 12 0.0004 38.1 5.9 50 51-120 78-127 (299)
163 2cpe_A RNA-binding protein EWS 59.3 14 0.00048 31.1 5.6 64 486-549 14-88 (113)
164 2e5g_A U6 snRNA-specific termi 59.2 16 0.00054 29.7 5.7 57 486-548 7-66 (94)
165 1wlj_A Interferon stimulated g 58.9 5.6 0.00019 37.4 3.2 43 50-120 4-46 (189)
166 1wez_A HnRNP H', FTP-3, hetero 58.5 17 0.00058 30.5 5.9 57 482-543 10-72 (102)
167 2ki2_A SS-DNA binding protein 58.1 12 0.00041 30.0 4.7 56 489-549 3-65 (90)
168 2jwn_A Embryonic polyadenylate 58.0 12 0.00041 32.1 4.9 57 487-548 36-99 (124)
169 2j76_E EIF-4B, EIF4B, eukaryot 57.9 8.1 0.00028 32.1 3.7 59 485-549 17-83 (100)
170 3md3_A Nuclear and cytoplasmic 57.9 21 0.00073 31.3 6.8 60 486-549 86-152 (166)
171 3mxm_B Three prime repair exon 57.7 16 0.00055 35.9 6.4 73 52-161 13-101 (242)
172 1fje_B Nucleolin RBD12, protei 57.7 14 0.00046 33.3 5.5 58 485-549 97-159 (175)
173 3nmr_A Cugbp ELAV-like family 57.6 22 0.00077 31.6 7.0 61 486-550 94-160 (175)
174 2xs2_A Deleted in azoospermia- 57.1 24 0.00083 28.9 6.6 54 487-544 9-68 (102)
175 2krb_A Eukaryotic translation 56.4 13 0.00044 29.4 4.5 58 488-549 2-70 (81)
176 3cg7_A CRN-4, cell death-relat 56.1 11 0.00037 38.7 5.0 49 52-120 20-69 (308)
177 2rs2_A Musashi-1, RNA-binding 54.2 14 0.00047 31.3 4.6 57 486-546 24-87 (109)
178 2jvr_A Nucleolar protein 3; RN 54.2 13 0.00046 32.0 4.6 61 485-549 26-90 (111)
179 3pgw_A U1-A; protein-RNA compl 53.8 22 0.00076 34.8 6.8 60 486-549 206-267 (282)
180 1iqt_A AUF1, heterogeneous nuc 53.7 9.7 0.00033 29.4 3.3 51 490-544 2-59 (75)
181 2g4b_A Splicing factor U2AF 65 53.7 14 0.00048 33.0 4.9 61 487-548 4-72 (172)
182 1b7f_A Protein (SXL-lethal pro 52.5 15 0.00053 32.5 4.9 59 487-549 3-68 (168)
183 1fje_B Nucleolin RBD12, protei 52.4 20 0.00067 32.2 5.7 63 485-548 11-75 (175)
184 2cq2_A Hypothetical protein LO 51.9 22 0.00074 31.1 5.5 59 488-550 26-87 (114)
185 2qfj_A FBP-interacting repress 51.6 22 0.00076 33.0 6.1 58 488-549 29-93 (216)
186 3n9u_C Cleavage and polyadenyl 51.2 22 0.00075 32.4 5.8 59 487-549 55-122 (156)
187 2lkz_A RNA-binding protein 5; 51.2 17 0.0006 30.2 4.7 58 487-548 9-75 (95)
188 2mss_A Protein (musashi1); RNA 51.0 12 0.0004 28.9 3.4 51 490-544 2-59 (75)
189 1l3k_A Heterogeneous nuclear r 50.6 25 0.00086 32.0 6.2 57 485-545 11-74 (196)
190 3q2s_C Cleavage and polyadenyl 50.5 25 0.00085 34.1 6.4 59 487-549 68-135 (229)
191 2yh0_A Splicing factor U2AF 65 49.8 19 0.00066 32.9 5.2 60 488-548 5-72 (198)
192 1wel_A RNA-binding protein 12; 49.7 30 0.001 29.7 6.2 56 485-544 23-85 (124)
193 1x4b_A Heterogeneous nuclear r 49.6 21 0.00072 30.1 5.1 56 486-545 26-88 (116)
194 2cpy_A RNA-binding protein 12; 49.2 15 0.00053 31.1 4.1 58 483-544 11-75 (114)
195 3nmr_A Cugbp ELAV-like family 48.3 22 0.00075 31.6 5.3 58 488-549 4-70 (175)
196 1fj7_A Nucleolin RBD1, protein 47.9 37 0.0013 27.7 6.3 62 487-549 17-80 (101)
197 3sde_A Paraspeckle component 1 47.6 28 0.00097 34.0 6.4 61 485-549 20-81 (261)
198 2qfj_A FBP-interacting repress 47.5 30 0.001 32.0 6.3 59 487-549 125-190 (216)
199 3ns6_A Eukaryotic translation 46.7 14 0.00049 30.6 3.4 60 487-550 6-78 (100)
200 3pgw_S U1-70K; protein-RNA com 45.6 21 0.00073 38.3 5.4 59 487-549 102-167 (437)
201 1wg5_A Heterogeneous nuclear r 45.5 34 0.0012 28.4 5.7 58 484-545 12-76 (104)
202 1qm9_A Polypyrimidine tract-bi 45.3 30 0.001 31.8 5.9 59 487-549 120-181 (198)
203 2adc_A Polypyrimidine tract-bi 45.2 32 0.0011 32.8 6.2 59 487-549 151-212 (229)
204 3egn_A RNA-binding protein 40; 45.1 52 0.0018 28.8 7.2 64 487-550 45-116 (143)
205 1zbu_A ERI-1 homolog, 3'-5' ex 44.7 15 0.0005 38.5 3.8 50 51-120 128-177 (349)
206 2dnl_A Cytoplasmic polyadenyla 43.8 16 0.00054 31.1 3.3 55 487-546 8-72 (114)
207 1whr_A Hypothetical KIAA1002 p 43.7 31 0.0011 30.7 5.3 44 194-263 29-72 (124)
208 2dit_A HIV TAT specific factor 43.6 45 0.0015 28.1 6.2 67 483-549 11-87 (112)
209 3tyt_A Heterogeneous nuclear r 43.4 26 0.00088 33.3 5.1 60 487-550 123-189 (205)
210 2e5i_A Heterogeneous nuclear r 43.2 50 0.0017 29.1 6.6 61 487-551 23-87 (124)
211 1y97_A Three prime repair exon 42.8 12 0.00041 36.2 2.7 47 51-120 10-69 (238)
212 1x5p_A Negative elongation fac 42.5 59 0.002 26.3 6.7 57 487-549 15-72 (97)
213 1qm9_A Polypyrimidine tract-bi 41.7 27 0.00091 32.2 4.8 60 487-550 3-65 (198)
214 2lmi_A GRSF-1, G-rich sequence 41.5 22 0.00077 29.7 3.9 56 485-544 9-73 (107)
215 2voo_A Lupus LA protein; RNA-b 40.3 29 0.00099 32.7 4.9 55 487-545 109-169 (193)
216 3d2w_A TAR DNA-binding protein 39.6 29 0.00098 28.2 4.2 52 485-540 9-62 (89)
217 2hgm_A HNRPF protein, heteroge 38.9 68 0.0023 28.2 6.8 57 483-544 38-102 (126)
218 1wf0_A TDP-43, TAR DNA-binding 38.5 23 0.0008 28.2 3.4 50 487-540 5-56 (88)
219 1yt3_A Ribonuclease D, RNAse D 38.4 64 0.0022 33.6 7.7 102 315-436 64-172 (375)
220 4f02_A Polyadenylate-binding p 38.3 50 0.0017 31.0 6.3 57 488-548 16-79 (213)
221 3tyt_A Heterogeneous nuclear r 37.8 43 0.0015 31.7 5.7 60 487-550 4-66 (205)
222 1wg1_A KIAA1579 protein, homol 37.0 27 0.00091 28.0 3.5 58 487-549 5-63 (88)
223 3u1l_A PRE-mRNA-splicing facto 36.8 55 0.0019 32.3 6.4 64 487-550 134-203 (240)
224 2e6m_A Werner syndrome ATP-dep 35.9 76 0.0026 29.7 7.1 101 319-435 90-196 (208)
225 2cjk_A Nuclear polyadenylated 35.3 44 0.0015 29.4 5.1 54 488-545 4-64 (167)
226 1sjr_A Polypyrimidine tract-bi 35.1 48 0.0016 30.9 5.3 59 488-550 47-108 (164)
227 2ghp_A U4/U6 snRNA-associated 34.5 39 0.0013 33.2 5.0 59 486-549 209-276 (292)
228 2cpm_A Sperm-associated antige 34.1 1E+02 0.0035 26.0 6.8 28 241-270 30-57 (94)
229 1vk0_A Hypothetical protein; h 34.0 38 0.0013 32.5 4.7 103 315-432 98-205 (206)
230 3smz_A Protein raver-1, ribonu 33.0 76 0.0026 30.9 6.9 59 487-549 95-160 (284)
231 2db1_A Heterogeneous nuclear r 32.6 50 0.0017 28.2 4.8 55 486-544 16-79 (118)
232 2dnn_A RNA-binding protein 12; 31.8 42 0.0014 28.6 4.1 53 486-543 15-73 (109)
233 1l3k_A Heterogeneous nuclear r 30.7 70 0.0024 28.9 5.8 54 487-544 104-164 (196)
234 4f02_A Polyadenylate-binding p 29.7 64 0.0022 30.2 5.4 59 487-549 103-166 (213)
235 2hgl_A HNRPF protein, heteroge 28.8 49 0.0017 29.4 4.2 56 485-544 42-106 (136)
236 2cjk_A Nuclear polyadenylated 27.8 52 0.0018 28.9 4.2 55 486-544 86-147 (167)
237 3saf_A Exosome component 10; e 27.7 1.5E+02 0.0052 31.6 8.5 99 318-436 175-279 (428)
238 3smz_A Protein raver-1, ribonu 27.2 83 0.0028 30.6 6.0 60 486-549 183-249 (284)
239 2bz2_A Negative elongation fac 25.1 1E+02 0.0035 26.4 5.5 58 486-549 38-96 (121)
240 4dfk_A DNA polymerase I, therm 25.0 83 0.0028 34.8 5.9 72 326-434 57-128 (540)
241 2m2b_A RNA-binding protein 10; 25.0 78 0.0027 27.3 4.7 58 487-549 23-89 (131)
242 2ghp_A U4/U6 snRNA-associated 24.9 88 0.003 30.5 5.6 55 486-544 40-99 (292)
243 2dha_A FLJ20171 protein; RRM d 24.8 55 0.0019 28.5 3.7 58 487-544 23-86 (123)
244 2lcw_A RNA-binding protein FUS 29.8 16 0.00056 30.9 0.0 59 487-549 7-80 (116)
245 3sde_A Paraspeckle component 1 23.6 1.1E+02 0.0037 29.7 6.0 58 487-548 96-159 (261)
246 1vd2_A Protein kinase C, IOTA 23.4 75 0.0025 26.6 4.0 57 490-546 17-74 (89)
247 3v4m_A Splicing factor U2AF 65 23.3 64 0.0022 27.2 3.7 48 502-549 26-82 (105)
248 3ue2_A Poly(U)-binding-splicin 22.2 68 0.0023 27.8 3.7 53 496-549 31-94 (118)
249 3zzy_A Polypyrimidine tract-bi 21.8 1.2E+02 0.0042 26.9 5.4 58 489-550 30-90 (130)
250 3s6e_A RNA-binding protein 39; 21.0 1.6E+02 0.0055 25.2 5.9 48 502-549 28-78 (114)
251 2dnr_A Synaptojanin-1; RRM dom 21.0 1.1E+02 0.0037 25.7 4.5 45 498-543 22-66 (91)
No 1
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=100.00 E-value=5.2e-103 Score=870.78 Aligned_cols=480 Identities=22% Similarity=0.330 Sum_probs=332.7
Q ss_pred eEEcCcccHHHHHHHHHHhhcCCCeEEEecCCCCccCCCCCC--CCCCCCHHHHHHHHHhhhhcccceeEEeeeeecCC-
Q 006991 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHR--VSTFDTPETAYLKAKFAAERFQILQFAICPFKLQA- 105 (622)
Q Consensus 29 i~dVt~~NF~~~l~~i~~~I~~a~FVAiD~EftGi~~~~~~~--~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~- 105 (622)
|||||++||+++|+.|+++|++|+|||||+|||||...+... .+.++|+++||+++|.+|+.|+|||+|||+|++++
T Consensus 2 ~m~V~~~Nf~~~l~~i~~~i~~~~fvaiD~Ef~Gi~~~~~~~~~~~~~~t~~~~Y~~~r~~v~~~~iiQlGlt~f~~~~~ 81 (507)
T 3d45_A 2 PMEIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHSMDFLLFQFGLCAFKYDHT 81 (507)
T ss_dssp CEEECHHHHHHHHHHHHHHHHHCSEEEEEEEESCSCC--------CBSCCHHHHHHHHHHHHTTBCEEEEEEEEEEECSS
T ss_pred CeEEeHHhHHHHHHHHHHHHhcCCEEEEeeeccCcCCCCCccccccccCCHHHHHHHHHHHHHhcccceEEEEEEecCCC
Confidence 699999999999999999999999999999999997543211 24589999999999999999999999999999987
Q ss_pred -CceeeEeeEEeecCccccccCCCCCceeechhHHHHHHHcCCCcchhhhcccccCCHHHHHHHHHHhCCCccccccc--
Q 006991 106 -SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHAT-- 182 (622)
Q Consensus 106 -~~y~~~~fNF~lfp~~~~~~~~~d~~f~~q~sSl~FL~~~gFDFnk~~~~GI~YLs~~eE~~~r~~~~~~~~~~~~~-- 182 (622)
.+|.+||||||+||+.. +.+.+|++|+||++||+||++||||||+|+++|||||+++||+.+++++.+++...+..
T Consensus 82 ~~~~~~~~fNf~~fp~~~-~~~~~d~~~~~~~~Si~fL~~~GfDFnk~~~~GI~yl~~~ee~~~~~~~~~~~~~~~~~~~ 160 (507)
T 3d45_A 82 DSKHVTKSFNFYVFPKPF-SRSSPDVKFVCQSSSIDFLASQGFDFNKVFCSGIPYLNQEEERQLREQFDEKRSQANGAGA 160 (507)
T ss_dssp SSCEEEEEEEEEBCCCCC-SSSSCCCEEEEEHHHHHHHHTTTCCHHHHHTTCBCBCCHHHHHHHHHHSCC----------
T ss_pred CCceeEEeEEEEecCccc-cccCcccceeecHHHHHHHHHcCCChhhHHhcCCCCCChHHHHHHHHHHHhhhhhhhcccc
Confidence 68999999999999852 23467899999999999999999999999999999999999999999998765543210
Q ss_pred cCCCCCCCCcccHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHhcCcccCCCCCccccccchHHHHHHHHHHHh
Q 006991 183 KSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLED 262 (622)
Q Consensus 183 ~~~~~~~~~~~d~~fi~~v~~~I~eWl~~~~~~~~~~~~~l~~~l~~~~~~~e~~~~~p~l~l~~~~~~q~~Lv~q~l~~ 262 (622)
....+..++.++++|+++++++|++|+++..+ +.+++++||++||+||||+|++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~I~~wl~~~~~--------------------------~~l~i~~~n~~~r~Lv~q~l~~ 214 (507)
T 3d45_A 161 LAKCPVTIPEDQKKFIDQVIEKIEDFLQSEEK--------------------------RSLELDPCTGFQRKLIYQTLSW 214 (507)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCcccCCHHHHHHHHHHHHHHHHHHhcCCC--------------------------CccccCCCcHHHHHHHHHHHHH
Confidence 01111125678899999999999999976321 1367889999999999999999
Q ss_pred ccCCcceeeeccCCCCceEEEEEEccChHHHHHHHHHhhHHHHhhhhccccHHHHHHHHHhCCCCEEechhHHHHHHHHH
Q 006991 263 FSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHS 342 (622)
Q Consensus 263 ~~~~l~~~~v~~k~g~~~~vrvi~~~~~eek~~l~~e~~~~e~e~~~~~~GFr~Vi~~L~~skKpIVGHN~llDL~~iy~ 342 (622)
+||+++.+......+....+.| .+.+++++..++++.+..+++.+.+++|||+||++|++++|||||||||+||||||+
T Consensus 215 ~fp~~v~~~~~~~~~~~~~i~v-~~~~~e~~~~~~~~~~~~~~~~~~~~~Gfr~v~~~L~~~~kpiVgHN~l~Dl~~l~~ 293 (507)
T 3d45_A 215 KYPKGIHVETLETDKKERHIVI-SKVDEEERKRREQEKYTKEQEELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHTIH 293 (507)
T ss_dssp --------------------------------------CCSTHHHHHHHSBTHHHHHHHHHHCCEEEESSCHHHHHHHHH
T ss_pred hCCCceEeeeccCCCcceeEEE-EeCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCeEEEechHHHHHHHHH
Confidence 9999875432111222233433 344455555566666666678899999999999999999999999999999999999
Q ss_pred hccCCCCCCHHHHHHHHHccCCCccchhhHHhhhC--cccccCchHHHHHHHHhcCCCCceeecCCCC-C----CCCccc
Q 006991 343 KFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIG--PVKKMTNISATIAYLKNRFFAPIEMEIPNQA-N----ENEGKI 415 (622)
Q Consensus 343 ~F~gpLP~t~~EFk~~i~~lFP~I~DTKyLa~~~~--~~~~~~~L~~~~~~l~~~~~~~p~ve~~~~~-~----~~~~h~ 415 (622)
+|+||||++++|||+.+|++||.|||||||++..+ .+...++|+++++.|.+.++.+|+|+++... + .+..|+
T Consensus 294 ~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~~L~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~He 373 (507)
T 3d45_A 294 QFYCPLPADLNEFKEMAICVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFDPPKVESAEGFPSYDTASEQLHE 373 (507)
T ss_dssp HHTCSCCSSHHHHHHHHHHHCSCEEEHHHHTTSTTHHHHCCCCCHHHHHHHTTSTTCCCCCEEECTTSCCCC----CCCC
T ss_pred HhcCCCCCCHHHHHHHHHHhCCceeEhHhhhhcCccccccCCCCHHHHHHHHhccCCCCCeEEecccccccccCCCCccc
Confidence 99999999999999999999999999999997632 2224789999999999888889999887542 2 356799
Q ss_pred chhhHHHHHHHHHHHHHHhcc---CCCCCCCCcHHHHhhhhhhhccccCCCCCCCCCCCccccCCCCCCCCCCcCCEEEE
Q 006991 416 HGHNVVKICQLFGKLCSILKI---TPDAIESSDDFLASAINRYANIFYSLPGSSQEPTNEEIRGWTNDKRKVSCEDVVFL 492 (622)
Q Consensus 416 AGyDA~mTg~vF~~l~~~l~~---~~~~~~s~~~~~~~~l~~~~N~l~~~~~~~~~~~d~~~~~l~g~~~~~~~~~vv~i 492 (622)
|||||||||+||++||++||. ..+... ...+.+|++|+|+|++ ++ +.|++|+||+|+|+.++|++|++
T Consensus 374 AGyDA~mTg~~F~kl~~~l~~~~~~~~~~~---~~~~~~l~~~~N~l~l--~~---~~d~~~i~l~g~d~~~~R~~vl~- 444 (507)
T 3d45_A 374 AGYDAYITGLCFISMANYLGSLLSPPKMCV---SARSKLIEPFFNKLFL--MR---VMDIPYLNLEGPDLQPKRDHVLH- 444 (507)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC------------CCSCSSSGGGTTEECC--CS---BSSCCSEESSSCCCCCCGGGEEE-
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCccccc---ccchhHHHhhheeeee--ec---cCCCceeeCCCCCCCCCcCcEEE-
Confidence 999999999999999999985 111100 1235689999999999 55 57899999999999999999666
Q ss_pred eccccccchhHHHHhhhhhhhccccceEEEEecCceEEEEecCCCchhHHHHHhhhcc
Q 006991 493 WGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKA 550 (622)
Q Consensus 493 ~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t~a~V~~~~~~~~~~~l~~~~~~~ 550 (622)
|+||++|+..+|.++++ .|| .++|+|||+|||||+|+++++|+++|++++++.
T Consensus 445 v~f~~~~~~~~i~~~fs----~fg-~v~V~widdt~a~V~~~~~~~a~~~l~~~~~~~ 497 (507)
T 3d45_A 445 VTFPKEWKTSDLYQLFS----AFG-NIQISWIDDTSAFVSLSQPEQVQIAVNTSKYAE 497 (507)
T ss_dssp EECCTTCCHHHHHHHGG----GGC-CCEEEECSSSEEEEECSCHHHHHHHHHHHTTCS
T ss_pred EeCCCCCCHHHHHHHHH----hcC-CEEEEEEcCCeEEEEECCHHHHHHHHHHHHhCC
Confidence 89999999999888775 566 389999999999999999999999999998764
No 2
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=100.00 E-value=3.2e-90 Score=753.75 Aligned_cols=406 Identities=22% Similarity=0.350 Sum_probs=260.8
Q ss_pred EEcCcccHHHHHHHHHHhhcCCCeEEEecCCCCccCCCCCC--CCCCCCHHHHHHHHHhhhhcccceeEEeeeeecCC--
Q 006991 30 KQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHR--VSTFDTPETAYLKAKFAAERFQILQFAICPFKLQA-- 105 (622)
Q Consensus 30 ~dVt~~NF~~~l~~i~~~I~~a~FVAiD~EftGi~~~~~~~--~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~-- 105 (622)
|||||+||++.|+.|+++|++|+|||||+||||+...++.+ .+.++|+++||+++|.+|+.|+|||+|||+|++++
T Consensus 1 M~V~r~nf~~~l~~i~~~i~~~~fVAiD~Ef~Gi~~~~~~~~~~~~~~s~e~~Y~~lr~nv~~~~iiQlGlt~f~~~~~~ 80 (430)
T 2a1r_A 1 MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTD 80 (430)
T ss_dssp CEECHHHHHHHHHHHHHHHHHCSEEEEEEEESCSCSSSCC-----CCCCHHHHHHHHHHHTTTBCEEEEEEEEEEEETTT
T ss_pred CceeHHHHHHHHHHHHHHHhcCCEEEEeeeeccccCCCccccccccCCCHHHHHHHHHHHHhhcceeeEEEEEEeecCCC
Confidence 79999999999999999999999999999999997654322 25789999999999999999999999999999987
Q ss_pred CceeeEeeEEeecCccccccCCCCCceeechhHHHHHHHcCCCcchhhhcccccCCHHHHHHHHHHhCCCccccccccC-
Q 006991 106 SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKS- 184 (622)
Q Consensus 106 ~~y~~~~fNF~lfp~~~~~~~~~d~~f~~q~sSl~FL~~~gFDFnk~~~~GI~YLs~~eE~~~r~~~~~~~~~~~~~~~- 184 (622)
.+|.+||||||+||+. .+...++++|+||++||+||++||||||+|+++||||++++||+.+|+++.++....+....
T Consensus 81 ~~~~~~~fNF~~FP~~-~~~~~~~~~~~~~~~Si~fL~~~GfDFnk~~~~GI~y~~~~ee~~~r~~~~~~~~~~~~~~~~ 159 (430)
T 2a1r_A 81 SKYITKSFNFYVFPKP-FNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGAL 159 (430)
T ss_dssp TEEEEEEEEEEBCCCC-SSSSSCCCEEEEEHHHHHHHHHTTCCHHHHHTTCBCBCCHHHHHHTC----------------
T ss_pred CceeEEEEEEEecccc-ccccccchhhhccHHHHHHHHHcCCChhhHhhcCcCccCHHHHHHHHHHHHhhhhhhcccccc
Confidence 5799999999999985 22345678999999999999999999999999999999999999999888766543211000
Q ss_pred ------C--CCCCCCcccHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHhcCcccCCCCCccccccchHHHHHH
Q 006991 185 ------S--SSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLV 256 (622)
Q Consensus 185 ------~--~~~~~~~~d~~fi~~v~~~I~eWl~~~~~~~~~~~~~l~~~l~~~~~~~e~~~~~p~l~l~~~~~~q~~Lv 256 (622)
. .+...+.++++|+++++++|++|+++.. .+.+++++|+++|++||
T Consensus 160 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~l~~~~--------------------------~~~l~l~~~~~~qr~Lv 213 (430)
T 2a1r_A 160 SYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEE--------------------------NKNLDLEPCTGFQRKLI 213 (430)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCccccccccCCcHHHHHHHHHHHHHHHHHHcCCC--------------------------CCccccCCCcHHHHHHH
Confidence 0 0012345668999999999999987522 12578899999999999
Q ss_pred HHHHHhccCCcceeeeccCCCCceEEEEEEccChHHHHHHHHHhhHHHHhhhhccccHHHHHHHHHhCCCCEEechhHHH
Q 006991 257 LKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLND 336 (622)
Q Consensus 257 ~q~l~~~~~~l~~~~v~~k~g~~~~vrvi~~~~~eek~~l~~e~~~~e~e~~~~~~GFr~Vi~~L~~skKpIVGHN~llD 336 (622)
||+++++||+++.+..-...+....++|...++ +++..++++..+.+++.+.+++|||+||++|++++|||||||||+|
T Consensus 214 ~q~l~~~fp~~~~~~~~~~~~~~~~v~v~k~~~-e~~~~~e~~~~~~~~~~l~~~~Gfr~V~~~L~~s~KpiVGHN~llD 292 (430)
T 2a1r_A 214 YQTLSWKYPKGIHVETLETEKKERYIVISKVDE-EERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLD 292 (430)
T ss_dssp --------------------------------------------CTTHHHHHHTTSBTHHHHHHHHHHCCEEEESSCHHH
T ss_pred HHHHHHhCCCceeeeeeeecCCceEEEEEeCCH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCceEechhHHH
Confidence 999999999976432111122223455555433 3333333333344567789999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHccCCCccchhhHHhhhC--cccccCchHHHHHHHHhcCCCCceeecCCC-CC----
Q 006991 337 FTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIG--PVKKMTNISATIAYLKNRFFAPIEMEIPNQ-AN---- 409 (622)
Q Consensus 337 L~~iy~~F~gpLP~t~~EFk~~i~~lFP~I~DTKyLa~~~~--~~~~~~~L~~~~~~l~~~~~~~p~ve~~~~-~~---- 409 (622)
|||||++|+||||++|+|||+.+|++||.|||||||++..+ .+...++|+++++.+++.++.+|+|+++.. .+
T Consensus 293 l~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~sL~~l~~~l~~~~~~~p~i~~~~~~~~y~~~ 372 (430)
T 2a1r_A 293 VMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTA 372 (430)
T ss_dssp HHHHHHHHTCCCCSSHHHHHHHHHHHCSSEEEHHHHHTSTTTTTTCSCCSHHHHHHHTTSTTCCCCCEEECTTCCCC---
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHCCceeehHHhhhccchhhccCCCCHHHHHHHHHhCCCCCCeeecCCCccccccC
Confidence 99999999999999999999999999999999999997642 223468999999999998899999998743 22
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHhccCCCCCCCCcHHHHhhhhhhhccccCCCCC
Q 006991 410 ENEGKIHGHNVVKICQLFGKLCSILKITPDAIESSDDFLASAINRYANIFYSLPGS 465 (622)
Q Consensus 410 ~~~~h~AGyDA~mTg~vF~~l~~~l~~~~~~~~s~~~~~~~~l~~~~N~l~~~~~~ 465 (622)
.+..|||||||||||+||++||++||..-........+.+++|+||+|||++ ||
T Consensus 373 ~~~~HeAGyDa~mTG~vFi~l~~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~--~r 426 (430)
T 2a1r_A 373 SEQLHEAGYDAYITGLCFISMANYLGSFLSPPKIHVSARSKLIEPFFNKLFL--MR 426 (430)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHGGGSSSCCSCCCSSCTTSGGGSSCCC-----
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHhhccCCCcccccchhHHHHHhhhhhhe--ee
Confidence 3566999999999999999999999883211111233467899999999999 77
No 3
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-47 Score=394.71 Aligned_cols=249 Identities=18% Similarity=0.276 Sum_probs=200.1
Q ss_pred ccceEEcCcccHHHHHHHHHHhhcCCCeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhhcccceeEEeeeeecCC
Q 006991 26 HWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQA 105 (622)
Q Consensus 26 ~~~i~dVt~~NF~~~l~~i~~~I~~a~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~ 105 (622)
...|+|||++||+++++.|+++|++|+||||||||||+..++ .....+++++||+++|.||+.+.|||+|||+|++++
T Consensus 9 ~~~IreVw~~Nl~ee~~~I~~~i~~~~fVAiDtEFpGvv~rp--~~~~~~t~d~~Y~~lr~nvd~l~iIQlGLt~f~~~g 86 (285)
T 4gmj_B 9 SQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARP--IGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQG 86 (285)
T ss_dssp -CCEEEECHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCC--TTCCTTSTTHHHHHHHHHHTTSCCCEEEEEEECTTS
T ss_pred CCeEEEechhHHHHHHHHHHHHHhcCCEEEEEEEecCccCCC--CCccCCCHHHHHHHHHHHHHhhcceeEEEEeeccCC
Confidence 447999999999999999999999999999999999997643 356778999999999999999999999999999987
Q ss_pred ---CceeeEeeEEeecCccccccCCCCCceeechhHHHHHHHcCCCcchhhhcccccCCHHHHHHHHHHhCCCccccccc
Q 006991 106 ---SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHAT 182 (622)
Q Consensus 106 ---~~y~~~~fNF~lfp~~~~~~~~~d~~f~~q~sSl~FL~~~gFDFnk~~~~GI~YLs~~eE~~~r~~~~~~~~~~~~~ 182 (622)
..|.+|+|||++++. +++|+++||+||++|||||||++++||+|....|
T Consensus 87 ~~p~~~~~wqFNF~f~~~----------~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~f~e------------------ 138 (285)
T 4gmj_B 87 EYPPGTSTWQFNFKFNLT----------EDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAE------------------ 138 (285)
T ss_dssp CCCSSCCEEEEEBCCCTT----------TSCCCHHHHHHHHHHTCCHHHHHHHCBCHHHHHH------------------
T ss_pred CcCCCeeEEEEEEEeccc----------cccccHHHHHHHHHcCCCHHHHHHcCCCHHHHHH------------------
Confidence 468999999996654 3579999999999999999999999999832110
Q ss_pred cCCCCCCCCcccHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHhcCcccCCCCCccccccchHHHHHHHHHHHh
Q 006991 183 KSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLED 262 (622)
Q Consensus 183 ~~~~~~~~~~~d~~fi~~v~~~I~eWl~~~~~~~~~~~~~l~~~l~~~~~~~e~~~~~p~l~l~~~~~~q~~Lv~q~l~~ 262 (622)
- +.
T Consensus 139 -----------------l----------------------l~-------------------------------------- 141 (285)
T 4gmj_B 139 -----------------L----------------------LM-------------------------------------- 141 (285)
T ss_dssp -----------------H----------------------HH--------------------------------------
T ss_pred -----------------H----------------------HH--------------------------------------
Confidence 0 00
Q ss_pred ccCCcceeeeccCCCCceEEEEEEccChHHHHHHHHHhhHHHHhhhhccccHHHHHHHHHhCCCCEEechhHHHHHHHHH
Q 006991 263 FSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHS 342 (622)
Q Consensus 263 ~~~~l~~~~v~~k~g~~~~vrvi~~~~~eek~~l~~e~~~~e~e~~~~~~GFr~Vi~~L~~skKpIVGHN~llDL~~iy~ 342 (622)
..|. .+....++|+.|++ +|+.|+++
T Consensus 142 ------------~sgl-----------------------------------------vl~~~v~WvtfH~~-yDf~yL~k 167 (285)
T 4gmj_B 142 ------------TSGV-----------------------------------------VLCEGVKWLSFHSG-YDFGYLIK 167 (285)
T ss_dssp ------------TSSS-----------------------------------------SSCTTCEEEESSCH-HHHHHHHH
T ss_pred ------------HhHH-----------------------------------------HhcCCCceEEecch-hhHHHHHH
Confidence 0000 01113356888888 69999999
Q ss_pred hcc-CCCCCCHHHHHHHHHccCCCccchhhHHhhhCcccccCchHHHHHHHHhcCCCCceeecCCCCCCCCcccchhhHH
Q 006991 343 KFL-APLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVV 421 (622)
Q Consensus 343 ~F~-gpLP~t~~EFk~~i~~lFP~I~DTKyLa~~~~~~~~~~~L~~~~~~l~~~~~~~p~ve~~~~~~~~~~h~AGyDA~ 421 (622)
.+. ++||++++||+..++.+||.||||||||.....++ .+|..+-+.|. .+ ..+..|+||+|||
T Consensus 168 ~lt~~~LP~~~~eF~~~l~~~FP~vYD~K~l~~~~~~l~--ggL~~lA~~L~----v~---------r~g~~HqAGsDSl 232 (285)
T 4gmj_B 168 ILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLK--GGLQEVAEQLE----LE---------RIGPQHQAGSDSL 232 (285)
T ss_dssp HHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGSTTCC--SCHHHHHHHTT----CC---------CCSCTTSHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHHCchhhhHHHHHHhccccC--ChHHHHHHhCC----CC---------CCCCCCcchhHHH
Confidence 998 78999999999999999999999999998765543 35666555552 11 1246799999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCcHHHHhhhhhhhccccC
Q 006991 422 KICQLFGKLCSILKITPDAIESSDDFLASAINRYANIFYS 461 (622)
Q Consensus 422 mTg~vF~~l~~~l~~~~~~~~s~~~~~~~~l~~~~N~l~~ 461 (622)
+||.||.+|...+..+.-. ...|.|.||-
T Consensus 233 lT~~~F~kl~~~~f~~~~~-----------~~~~~g~l~G 261 (285)
T 4gmj_B 233 LTGMAFFKMREMFFEDHID-----------DAKYCGHLYG 261 (285)
T ss_dssp HHHHHHHHHHHHHHTTCCC-----------HHHHTTCCTT
T ss_pred HHHHHHHHHHHHHhcCCcc-----------hHHhCCEEec
Confidence 9999999999988542211 2578999986
No 4
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=100.00 E-value=1.2e-44 Score=376.70 Aligned_cols=250 Identities=17% Similarity=0.293 Sum_probs=196.8
Q ss_pred CCCccceEEcCcccHHHHHHHHHHhhcCCCeEEEecCCCCccCCCCCCCCCCC-CHHHHHHHHHhhhhcccceeEEeeee
Q 006991 23 NPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFD-TPETAYLKAKFAAERFQILQFAICPF 101 (622)
Q Consensus 23 ~~~~~~i~dVt~~NF~~~l~~i~~~I~~a~FVAiD~EftGi~~~~~~~~~~~d-t~eerY~~~k~~a~~f~iiQ~Gl~~f 101 (622)
+...+.|+|||++||+++++.|+++|++|+|||||+||||+..+ +.+.++ ++++||+++|.||+.+.|||+|||+|
T Consensus 17 ~~~~~~IreVw~~Nleee~~~Ir~~i~~~~fVAmDtEFpGvv~r---p~g~f~~~~e~~Yq~lR~NVd~l~iIQlGLt~f 93 (333)
T 2p51_A 17 SSQISPIRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVAR---PLGVFKSSDDYHYQTLRANVDSLKIIQIGLALS 93 (333)
T ss_dssp -CCSCSEEEECTTTHHHHHHHHHHHTTTSCEEEEEEECCCCCCC---CCSCCSSSHHHHHHHHHHHHHHSCCCEEEEEEE
T ss_pred CCCCcEEEEehHhHHHHHHHHHHHHHhhCCEEEEeeeccccccc---cccccCCCHHHHHHHHHHhhhhccceEEEEEEE
Confidence 35567999999999999999999999999999999999999754 333455 58999999999999999999999999
Q ss_pred ecCCC---ceeeEeeEEeecCccccccCCCCCceeechhHHHHHHHcCCCcchhhhcccccCCHHHHHHHHHHhCCCccc
Q 006991 102 KLQAS---KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAV 178 (622)
Q Consensus 102 ~~~~~---~y~~~~fNF~lfp~~~~~~~~~d~~f~~q~sSl~FL~~~gFDFnk~~~~GI~YLs~~eE~~~r~~~~~~~~~ 178 (622)
+.+++ .|.+|+|||+ |+. .+++|+++||+||+++||||||+.++||||..-.|. +
T Consensus 94 d~~G~~p~~~~twqFNF~-F~~---------~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~el------L------ 151 (333)
T 2p51_A 94 DEEGNAPVEACTWQFNFT-FNL---------QDDMYAPESIELLTKSGIDFKKHQEVGIEPADFAEL------L------ 151 (333)
T ss_dssp CTTSCCCTTCSEEEEEBC-CCT---------TTSCCCHHHHHHHHHTTCCHHHHHHHCBCHHHHHHH------H------
T ss_pred ccCCCCCCCceeEEEEEE-ECC---------cccccCHHHHHHHHHcCCChhHHHHcCCCHHHHHHH------H------
Confidence 99874 4899999999 775 347999999999999999999999999999621100 0
Q ss_pred cccccCCCCCCCCcccHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHhcCcccCCCCCccccccchHHHHHHHH
Q 006991 179 DHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLK 258 (622)
Q Consensus 179 ~~~~~~~~~~~~~~~d~~fi~~v~~~I~eWl~~~~~~~~~~~~~l~~~l~~~~~~~e~~~~~p~l~l~~~~~~q~~Lv~q 258 (622)
. .+ .+.
T Consensus 152 -----------------------~-------~S------------------------------GLv-------------- 157 (333)
T 2p51_A 152 -----------------------I-------GS------------------------------GLV-------------- 157 (333)
T ss_dssp -----------------------H-------TT------------------------------TSS--------------
T ss_pred -----------------------H-------hc------------------------------Ccc--------------
Confidence 0 00 000
Q ss_pred HHHhccCCcceeeeccCCCCceEEEEEEccChHHHHHHHHHhhHHHHhhhhccccHHHHHHHHHhCCCCEEechhHHHHH
Q 006991 259 MLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFT 338 (622)
Q Consensus 259 ~l~~~~~~l~~~~v~~k~g~~~~vrvi~~~~~eek~~l~~e~~~~e~e~~~~~~GFr~Vi~~L~~skKpIVGHN~llDL~ 338 (622)
. .. ...-|.+++..|+.
T Consensus 158 -------------l-~~-------------------------------------------------~V~Witfhg~YDfg 174 (333)
T 2p51_A 158 -------------L-QE-------------------------------------------------EVTWITFHSGYDFA 174 (333)
T ss_dssp -------------S-CT-------------------------------------------------TCEEEESSCHHHHH
T ss_pred -------------c-CC-------------------------------------------------CceEEEeccchhHH
Confidence 0 00 01111245789999
Q ss_pred HHHHhcc-CCCCCCHHHHHHHHHccCCCccchhhHHhhhCcccccCchHHHHHHHHhcCCCCceeecCCCCCCCCcccch
Q 006991 339 FIHSKFL-APLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHG 417 (622)
Q Consensus 339 ~iy~~F~-gpLP~t~~EFk~~i~~lFP~I~DTKyLa~~~~~~~~~~~L~~~~~~l~~~~~~~p~ve~~~~~~~~~~h~AG 417 (622)
|+++.+. .|||++++||++.++.+||.||||||||.....++ .+|..+.+.|. + ...+..|+||
T Consensus 175 yLlK~Lt~~~LP~~~~eF~~~l~~~FP~iYD~K~l~~~~~~l~--ggL~~lA~~L~--------v-----~Rig~~HqAG 239 (333)
T 2p51_A 175 YLLKAMTQIPLPAEYEEFYKILCIYFPKNYDIKYIMKSVLNNS--KGLQDIADDLQ--------I-----HRIGPQHQAG 239 (333)
T ss_dssp HHHHHHHCSCCCSSHHHHHHHHHHHSSSEEEHHHHHTTTTCCC--CCHHHHHHHTT--------C-----CCCSCTTSHH
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHCcchhhHHHHHHHhcccc--CCHHHHHHHcC--------C-----CccCcchhhh
Confidence 9999987 69999999999999999999999999998865443 46777766663 1 1236789999
Q ss_pred hhHHHHHHHHHHHHHHhccCCCCCCCCcHHHHhhhhhhhccccC
Q 006991 418 HNVVKICQLFGKLCSILKITPDAIESSDDFLASAINRYANIFYS 461 (622)
Q Consensus 418 yDA~mTg~vF~~l~~~l~~~~~~~~s~~~~~~~~l~~~~N~l~~ 461 (622)
+|||+||.+|.||++.+-... ..+.|.|.||.
T Consensus 240 sDSlLT~~~F~kl~~~~f~~~------------~~~~~~g~l~G 271 (333)
T 2p51_A 240 SDALLTARIFFEIRSRYFDGS------------IDSRMLNQLYG 271 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS------------CCGGGTTCCTT
T ss_pred hHHHHHHHHHHHHHHHhcCCC------------chhhhCCEEec
Confidence 999999999999999773221 11577787775
No 5
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=100.00 E-value=6.7e-45 Score=368.89 Aligned_cols=231 Identities=19% Similarity=0.310 Sum_probs=187.6
Q ss_pred ceEEcCcccHHHHHHHHHHhhcCCCeEEEecCCCCccCCCCCCCCCCC-CHHHHHHHHHhhhhcccceeEEeeeeecCCC
Q 006991 28 PIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFD-TPETAYLKAKFAAERFQILQFAICPFKLQAS 106 (622)
Q Consensus 28 ~i~dVt~~NF~~~l~~i~~~I~~a~FVAiD~EftGi~~~~~~~~~~~d-t~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~~ 106 (622)
.|+|||++||+++++.|+++|++|+||||||||||+..+ +.+.++ ++++||+++|.||+.+.|||+|||+|+.+++
T Consensus 1 ~i~eVw~~Nl~~e~~~I~~~i~~~~fvAmDtEFpGvv~r---p~g~f~~~~~~~Y~~lr~nVd~l~iIQlGlt~~~~~g~ 77 (252)
T 2d5r_A 1 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVAR---PIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGE 77 (252)
T ss_dssp CEEEECGGGHHHHHHHHHHHHHHCCEEEEEEECCCCCCC---CCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEECTTSC
T ss_pred CeEEehhhhHHHHHHHHHHHHhhCCEEEEEeeecceecc---cCCCCCCCHHHHHHHHHHhhhhcceeEEEEEEEccCCC
Confidence 489999999999999999999999999999999999753 333444 7999999999999999999999999998873
Q ss_pred ---ceeeEeeEEeecCccccccCCCCCceeechhHHHHHHHcCCCcchhhhcccccCCHHHHHHHHHHhCCCcccccccc
Q 006991 107 ---KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATK 183 (622)
Q Consensus 107 ---~y~~~~fNF~lfp~~~~~~~~~d~~f~~q~sSl~FL~~~gFDFnk~~~~GI~YLs~~eE~~~r~~~~~~~~~~~~~~ 183 (622)
.|.+|+|||+ |+.. +++|+++||+||+++||||||+.++||||..-.|.
T Consensus 78 ~p~~~~~wqFNF~-F~~~---------~d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~F~el------------------ 129 (252)
T 2d5r_A 78 YPPGTSTWQFNFK-FNLT---------EDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAEL------------------ 129 (252)
T ss_dssp CCSSCCEEEEEBC-CCTT---------TSCCCHHHHHHHHHHTCCHHHHHHHCBCHHHHHHH------------------
T ss_pred CCCCceeEEEEEE-ECCc---------ccccCHHHHHHHHHcCCChhHHHhcCCCHHHHHHH------------------
Confidence 5789999999 8752 46899999999999999999999999999521100
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHhcCcccCCCCCccccccchHHHHHHHHHHHhc
Q 006991 184 SSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDF 263 (622)
Q Consensus 184 ~~~~~~~~~~d~~fi~~v~~~I~eWl~~~~~~~~~~~~~l~~~l~~~~~~~e~~~~~p~l~l~~~~~~q~~Lv~q~l~~~ 263 (622)
+.. + .+
T Consensus 130 ---------------------------------------l~~--------s-------gl-------------------- 135 (252)
T 2d5r_A 130 ---------------------------------------LMT--------S-------GV-------------------- 135 (252)
T ss_dssp ---------------------------------------HHT--------T-------TS--------------------
T ss_pred ---------------------------------------HHh--------c-------Cc--------------------
Confidence 000 0 00
Q ss_pred cCCcceeeeccCCCCceEEEEEEccChHHHHHHHHHhhHHHHhhhhccccHHHHHHHHHhCCCCEEechhHHHHHHHHHh
Q 006991 264 SDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSK 343 (622)
Q Consensus 264 ~~~l~~~~v~~k~g~~~~vrvi~~~~~eek~~l~~e~~~~e~e~~~~~~GFr~Vi~~L~~skKpIVGHN~llDL~~iy~~ 343 (622)
+ . . .+..-|.|++..|+.|+++.
T Consensus 136 ----v---l-~-------------------------------------------------~~v~Witfhg~yDf~yL~k~ 158 (252)
T 2d5r_A 136 ----V---L-C-------------------------------------------------EGVKWLSFHSGYDFGYLIKI 158 (252)
T ss_dssp ----S---S-S-------------------------------------------------SSCEEEESSCHHHHHHHHHH
T ss_pred ----c---c-C-------------------------------------------------CCceEEEecCcchHHHHHHH
Confidence 0 0 0 00122336789999999999
Q ss_pred cc-CCCCCCHHHHHHHHHccCCCccchhhHHhhhCcccccCchHHHHHHHHhcCCCCceeecCCCCCCCCcccchhhHHH
Q 006991 344 FL-APLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVK 422 (622)
Q Consensus 344 F~-gpLP~t~~EFk~~i~~lFP~I~DTKyLa~~~~~~~~~~~L~~~~~~l~~~~~~~p~ve~~~~~~~~~~h~AGyDA~m 422 (622)
+. .|||+++++|++.++.+||.||||||||.....++ .+|..+.+.|.- ...+..|+||+||++
T Consensus 159 L~~~~LP~~~~~F~~~l~~~FP~iyD~K~l~~~~~~l~--~gL~~la~~L~v-------------~r~g~~HqAGsDsll 223 (252)
T 2d5r_A 159 LTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLK--GGLQEVAEQLEL-------------ERIGPQHQAGSDSLL 223 (252)
T ss_dssp HHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGCTTCC--SSHHHHHHHHTC-------------CCCSSTTSHHHHHHH
T ss_pred hcCCCCCCCHHHHHHHHHHHCcchhhHHHHHHHhcccC--CCHHHHHHHcCC-------------CccCcccchhhhHHH
Confidence 98 69999999999999999999999999998865442 467777777631 113568999999999
Q ss_pred HHHHHHHHHHHhc
Q 006991 423 ICQLFGKLCSILK 435 (622)
Q Consensus 423 Tg~vF~~l~~~l~ 435 (622)
||.+|.||++.+-
T Consensus 224 T~~~F~km~~~~f 236 (252)
T 2d5r_A 224 TGMAFFKMREMFF 236 (252)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999873
No 6
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=100.00 E-value=4e-44 Score=368.81 Aligned_cols=253 Identities=15% Similarity=0.258 Sum_probs=190.5
Q ss_pred ccceEEcCcccHHHHHHHHHHhhcCCCeEEEecCCCCccCCCCCCCCCCCC-HHHHHHHHHhhhhcccceeEEeeeeecC
Q 006991 26 HWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDT-PETAYLKAKFAAERFQILQFAICPFKLQ 104 (622)
Q Consensus 26 ~~~i~dVt~~NF~~~l~~i~~~I~~a~FVAiD~EftGi~~~~~~~~~~~dt-~eerY~~~k~~a~~f~iiQ~Gl~~f~~~ 104 (622)
.+.|+|||++||+++++.|+++|++|+||||||||||+..++ ...+++ +++||+++|.||+.+.|||+|||+|+++
T Consensus 13 ~~~i~eVw~~Nl~~e~~~I~~~i~~~~fVAmDtEFpGvv~rp---~g~f~~~~d~~Yq~lr~nVd~l~iIQlGLt~~~~~ 89 (289)
T 1uoc_A 13 YLFVRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARP---IGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDAN 89 (289)
T ss_dssp GGCCEEECTTTHHHHHHHHHHHTTTSCEEEEEEEEEC-------------CHHHHHHHHHHHHHTTCEEEEEEEEEECTT
T ss_pred CcEEEEehhhhHHHHHHHHHHHHhhCCEEEEEeeecceeccC---CcccCCCHHHHHHHHHHhhhhccceEEEEEEEccC
Confidence 579999999999999999999999999999999999997543 334554 7899999999999999999999999998
Q ss_pred CC----ceeeEeeEEeecCccccccCCCCCceeechhHHHHHHHcCCCcchhhhcccccCCHHHHHHHHHHhCCCccccc
Q 006991 105 AS----KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDH 180 (622)
Q Consensus 105 ~~----~y~~~~fNF~lfp~~~~~~~~~d~~f~~q~sSl~FL~~~gFDFnk~~~~GI~YLs~~eE~~~r~~~~~~~~~~~ 180 (622)
++ +|.+|+|||+ |+. .+++|+++||+||+++||||||++++||||..-.|. +
T Consensus 90 g~~p~~~~~~wqFNF~-F~~---------~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~el------l-------- 145 (289)
T 1uoc_A 90 GNKPDNGPSTWQFNFE-FDP---------KKEIMSTESLELLRKSGINFEKHENLGIDVFEFSQL------L-------- 145 (289)
T ss_dssp CCCCSSSCSEEEEEBC-CCT---------TCCCCCHHHHHHHHHTTCCHHHHHHHCBCHHHHHHH------H--------
T ss_pred CCcCCCCcceEEEEEE-ECC---------ccccccHHHHHHHHHcCCChhHHHHcCCCHHHHHHH------H--------
Confidence 74 4899999999 875 247899999999999999999999999999521100 0
Q ss_pred cccCCCCCCCCcccHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHhcCcccCCCCCccccccchHHHHHHHHHH
Q 006991 181 ATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKML 260 (622)
Q Consensus 181 ~~~~~~~~~~~~~d~~fi~~v~~~I~eWl~~~~~~~~~~~~~l~~~l~~~~~~~e~~~~~p~l~l~~~~~~q~~Lv~q~l 260 (622)
+. + .+
T Consensus 146 -------------------------------------------~~--------s-------gL----------------- 150 (289)
T 1uoc_A 146 -------------------------------------------MD--------S-------GL----------------- 150 (289)
T ss_dssp -------------------------------------------HT--------S-------SC-----------------
T ss_pred -------------------------------------------Hh--------c-------CC-----------------
Confidence 00 0 00
Q ss_pred HhccCCcceeeeccCCCCceEEEEEEccChHHHHHHHHHhhHHHHhhhhccccHHHHHHHHHhCCCCEEechhHHHHHHH
Q 006991 261 EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFI 340 (622)
Q Consensus 261 ~~~~~~l~~~~v~~k~g~~~~vrvi~~~~~eek~~l~~e~~~~e~e~~~~~~GFr~Vi~~L~~skKpIVGHN~llDL~~i 340 (622)
+ . . . ...-|.+++..|+.|+
T Consensus 151 -------v---l-~-~------------------------------------------------~v~Witfhg~yDfgyL 170 (289)
T 1uoc_A 151 -------M---M-D-D------------------------------------------------SVTWITYHAAYDLGFL 170 (289)
T ss_dssp -------S---S-C-T------------------------------------------------TSEEEESSTTHHHHHH
T ss_pred -------c---c-C-C------------------------------------------------CceEEEccCcchHHHH
Confidence 0 0 0 0 0111224589999999
Q ss_pred HHhcc-CCCCCCHHHHHHHHHccCCCccchhhHHhhhCcccc-------------cCchHHHHHHHHhcCCCCceeecCC
Q 006991 341 HSKFL-APLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKK-------------MTNISATIAYLKNRFFAPIEMEIPN 406 (622)
Q Consensus 341 y~~F~-gpLP~t~~EFk~~i~~lFP~I~DTKyLa~~~~~~~~-------------~~~L~~~~~~l~~~~~~~p~ve~~~ 406 (622)
++.+. .|||+++++|+..++.+||.||||||||.....+.. ..+|..+.+.|. .
T Consensus 171 ~k~Lt~~~LP~~~~~F~~~l~~~FP~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA~~L~----v-------- 238 (289)
T 1uoc_A 171 INILMNDSMPNNKEDFEWWVHQYMPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELG----L-------- 238 (289)
T ss_dssp HHHHTTSCCCSSHHHHHHHHHHHCSSEEEHHHHHHHHTTTCC-------------CCSHHHHHHHTT----C--------
T ss_pred HHHhccccCCcCHHHHHHHHHHhCccceeHHHHHHHHHhccCcccccccccccccCCCHHHHHHHcC----C--------
Confidence 99998 699999999999999999999999999987544332 235666666552 1
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHHHhccCCCCCCCCcHHHHhhhhhhhccccC
Q 006991 407 QANENEGKIHGHNVVKICQLFGKLCSILKITPDAIESSDDFLASAINRYANIFYS 461 (622)
Q Consensus 407 ~~~~~~~h~AGyDA~mTg~vF~~l~~~l~~~~~~~~s~~~~~~~~l~~~~N~l~~ 461 (622)
...+..|+||+||++||.+|.||.+.+-..+.... ..++|.|.||.
T Consensus 239 -~r~g~~HqAGsDSllT~~~F~kl~~~~~~~~~~~~--------~~~~~~g~l~G 284 (289)
T 1uoc_A 239 -PRFSIFTTTGGQSLLMLLSFCQLSKLSMHKFPNGT--------DFAKYQGVIYG 284 (289)
T ss_dssp -CCCGGGGSHHHHHHHHHHHHHHHHHHTTTBCTTSC--------BGGGGTTCSSC
T ss_pred -CccCcccccHHHHHHHHHHHHHHHHHHhhhhcCCC--------ChHHhCCEEeC
Confidence 12345799999999999999999997732211100 13588888885
No 7
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=99.46 E-value=2.5e-14 Score=123.28 Aligned_cols=70 Identities=13% Similarity=0.204 Sum_probs=60.5
Q ss_pred cCCCCCCCCCCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCceEEEEecCCCchhHHHHHhhhcc
Q 006991 475 RGWTNDKRKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKA 550 (622)
Q Consensus 475 ~~l~g~~~~~~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t~a~V~~~~~~~~~~~l~~~~~~~ 550 (622)
.||.|+|+.++|+||+++ +||++||+.||.+.++ .|+. ++|+|||||+|||+|++++.|..+|..++++.
T Consensus 4 ~~l~g~d~~p~r~HVf~l-~FP~ewKt~DI~~lFs----~fgg-v~I~WidDTsAlvvf~~~~~a~~al~~i~k~~ 73 (100)
T 1whv_A 4 GSSGGPDLQPKRDHVLHV-TFPKEWKTSDLYQLFS----AFGN-IQISWIDDTSAFVSLSQPEQVQIAVNTSKYAE 73 (100)
T ss_dssp SCCCCSCCCCCCCSEEEE-ECCTTCCHHHHHHHHT----TTCS-CCCEEEETTEEEEECSCHHHHHHHHHHHHHCC
T ss_pred cccCCCCCCCCCCeEEEE-eCChhhhhHHHHHHhh----ccCC-EEEEEEcCCeEEEEecCHHHHHHHHHhcccCC
Confidence 489999999999999997 9999999999765333 4442 79999999999999999999999999887654
No 8
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=99.23 E-value=6.1e-12 Score=108.81 Aligned_cols=68 Identities=15% Similarity=0.259 Sum_probs=53.1
Q ss_pred CCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCceEEEEecCCCchhHHHHHhhhcc--ccccchh
Q 006991 484 VSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKA--VSGPLRE 557 (622)
Q Consensus 484 ~~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t~a~V~~~~~~~~~~~l~~~~~~~--~~~~l~~ 557 (622)
.+|+||+++ +||++||+.||.+.+ ..||. ++|+|||||+|||+|++++.|..+|..++++. .+.++.+
T Consensus 3 ~~R~HV~~l-~FP~ewKt~Di~~lF----s~fgg-v~I~WidDTsAlvvf~~~~~a~~al~~i~~~~~y~i~ty~e 72 (101)
T 3ctr_A 3 LGSDHVLHV-TFPKEWKTSDLYQLF----SAFGN-IQISWIDDTSAFVSLSQPEQVKIAVNTSKYAESYRIQTYAE 72 (101)
T ss_dssp SEEEEEEEE-ECCTTCCHHHHHHHT----TTSEE-EEEEEEETTEEEEEEEEECHHHHHHHHHTTCSSCCCCCHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHH----hccCC-EEEEEEcCCeEEEEecCHHHHHHHHHhcccCCceEEEEhHH
Confidence 468888886 999999999976432 23442 69999999999999999999999999876654 3444433
No 9
>1ug8_A Poly(A)-specific ribonuclease; R3H domain, poly(A)-specific 3'-exoribonuclease, PARN, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.68.7.1
Probab=98.68 E-value=2.1e-08 Score=84.79 Aligned_cols=73 Identities=14% Similarity=0.153 Sum_probs=53.4
Q ss_pred CcccHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHhcCcccCCCCCccccccchHHHHHHHHHHHhccCCccee
Q 006991 191 SVADTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPL 270 (622)
Q Consensus 191 ~~~d~~fi~~v~~~I~eWl~~~~~~~~~~~~~l~~~l~~~~~~~e~~~~~p~l~l~~~~~~q~~Lv~q~l~~~~~~l~~~ 270 (622)
+++++.|++.++++|.+|+++..+ ..|++++||+|||+||||++++.||+...+
T Consensus 6 p~e~k~~id~i~~kIe~FL~s~~~--------------------------~~l~l~pCN~f~RkLIYQ~~~~kfp~~i~v 59 (87)
T 1ug8_A 6 SGDQKKFIDQVIEKIEDFLQSEEK--------------------------RSLELDPCTGFQRKLIYQTLSWKYPKGIHV 59 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSC--------------------------CEEECCCCCSHHHHHHHHHHHHHSSSSEEE
T ss_pred ChHHHHHHHHHHHHHHHHHhCCCC--------------------------CceecCCchHHHHHHHHHHHHHhcCCceEE
Confidence 456789999999999999987432 147899999999999999999999998643
Q ss_pred eeccCCCCceEEEEEEccC
Q 006991 271 IIPAKGGGTQAVRAVLTSS 289 (622)
Q Consensus 271 ~v~~k~g~~~~vrvi~~~~ 289 (622)
..-...+....+.+...++
T Consensus 60 et~~~e~~~~~ivv~~~~~ 78 (87)
T 1ug8_A 60 ETLETDKKERHIVISKVDE 78 (87)
T ss_dssp EEECCSSSCSEEEEEECCT
T ss_pred EEEecCCceEEEEEEecCH
Confidence 3212222334455555444
No 10
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=96.58 E-value=0.0093 Score=57.05 Aligned_cols=97 Identities=22% Similarity=0.258 Sum_probs=62.0
Q ss_pred cHHHHHHHHHh--CCCCEEechhHHHHHHHHHhcc--C-CCCCCHHHHHHHHHccCCCccchhhHHhhhCcccccCchHH
Q 006991 313 GFREVIDLISA--SQKPLVAHNSLNDFTFIHSKFL--A-PLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISA 387 (622)
Q Consensus 313 GFr~Vi~~L~~--skKpIVGHN~llDL~~iy~~F~--g-pLP~t~~EFk~~i~~lFP~I~DTKyLa~~~~~~~~~~~L~~ 387 (622)
-|..|++.+.+ .+.++||||.=.|+-+|.+.|- | ++|. +. .+..++||-.++....|-. ..+|..
T Consensus 81 ~~~~v~~~~~~~l~~~~lv~hn~~fD~~~L~~~~~~~g~~~p~-~~--------~~~~~iDt~~l~~~~~p~~-~~~L~~ 150 (194)
T 2gui_A 81 TFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPK-TN--------TFCKVTDSLAVARKMFPGK-RNSLDA 150 (194)
T ss_dssp CHHHHHHHHHHHHTTSEEEETTHHHHHHHHHHHHHHTCSCCCC-GG--------GTSEEEEHHHHHHHHSTTS-CCSHHH
T ss_pred CHHHHHHHHHHHHCCCeEEEEchHHhHHHHHHHHHHcCCCCcc-cc--------ccCceeeHHHHHHHHcCCC-CCCHHH
Confidence 44444444433 4679999999999998887652 2 3331 10 0235889987777655422 236777
Q ss_pred HHHHHHhcCCCCceeecCCCCCCC-CcccchhhHHHHHHHHHHHHH
Q 006991 388 TIAYLKNRFFAPIEMEIPNQANEN-EGKIHGHNVVKICQLFGKLCS 432 (622)
Q Consensus 388 ~~~~l~~~~~~~p~ve~~~~~~~~-~~h~AGyDA~mTg~vF~~l~~ 432 (622)
+.+.+. + +. .+ ..|.|-.||..|+.||.+|..
T Consensus 151 l~~~~g--------i--~~---~~~~~H~Al~Da~~ta~l~~~l~~ 183 (194)
T 2gui_A 151 LCARYE--------I--DN---SKRTLHGALLDAQILAEVYLAMTG 183 (194)
T ss_dssp HHHHTT--------C--CC---TTCSSCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHcC--------c--CC---CCCCCCChHHHHHHHHHHHHHHHh
Confidence 666541 1 11 12 479999999999999988864
No 11
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=96.50 E-value=0.0075 Score=57.77 Aligned_cols=87 Identities=13% Similarity=0.028 Sum_probs=54.8
Q ss_pred CCCCEEechhHHHHHHHHHhccCCCCCCHHHHHHHHHccCCCccchhhHHh--h--hCcccccCchHHHHHHHHhcCCCC
Q 006991 324 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLK--D--IGPVKKMTNISATIAYLKNRFFAP 399 (622)
Q Consensus 324 skKpIVGHN~llDL~~iy~~F~gpLP~t~~EFk~~i~~lFP~I~DTKyLa~--~--~~~~~~~~~L~~~~~~l~~~~~~~ 399 (622)
.+.++||||.-.|+-+|-.. +|. ..++||..+.. . .-|-.+..+|..+.+.+-.
T Consensus 82 ~~~~lV~hn~~fD~~~L~~~----~~~-------------~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lg----- 139 (189)
T 1wlj_A 82 KGKLVVGHDLKHDFQALKED----MSG-------------YTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLH----- 139 (189)
T ss_dssp TTSEEEESSHHHHHHHTTCC----CTT-------------CEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTC-----
T ss_pred CCCEEEECCcHHHHHHHHHh----CCC-------------CceechHhhhhhhhcccCCCCCCccHHHHHHHHcC-----
Confidence 37899999999999877543 221 13889976532 1 1121235567777775211
Q ss_pred ceeecCCCCCCCCcccchhhHHHHHHHHHHHHHHhccC
Q 006991 400 IEMEIPNQANENEGKIHGHNVVKICQLFGKLCSILKIT 437 (622)
Q Consensus 400 p~ve~~~~~~~~~~h~AGyDA~mTg~vF~~l~~~l~~~ 437 (622)
+ +.+. .+..|.|-.||..|+.+|.+|...+...
T Consensus 140 --i--~~~~-~~~~H~Al~Da~ata~l~~~l~~~~~~~ 172 (189)
T 1wlj_A 140 --K--SIQN-SLLGHSSVEDARATMELYQISQRIRARR 172 (189)
T ss_dssp --C--CCSC-CTTCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --C--CCCC-CCCCcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1111 1237999999999999999999877543
No 12
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=96.21 E-value=0.022 Score=54.30 Aligned_cols=93 Identities=16% Similarity=0.115 Sum_probs=60.8
Q ss_pred cHHHHHHHHHh--CCCCEEechhHHHHHHHHHhcc--C-CCCCCHHHHHHHHHccCCCccchhhHHhhhCcccccCchHH
Q 006991 313 GFREVIDLISA--SQKPLVAHNSLNDFTFIHSKFL--A-PLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISA 387 (622)
Q Consensus 313 GFr~Vi~~L~~--skKpIVGHN~llDL~~iy~~F~--g-pLP~t~~EFk~~i~~lFP~I~DTKyLa~~~~~~~~~~~L~~ 387 (622)
-|..|++.+.+ .+.+|||||.=.|+-+|-..|- | +.| -..++||..++..... .+..+|..
T Consensus 78 ~~~~v~~~~~~~l~~~~lv~hn~~fD~~~L~~~~~~~g~~~~-------------~~~~iDt~~l~~~~~~-~~~~~L~~ 143 (186)
T 2p1j_A 78 SIEEVLPEFLGFLEDSIIVAHNANFDYRFLRLWIKKVMGLDW-------------ERPYIDTLALAKSLLK-LRSYSLDS 143 (186)
T ss_dssp BHHHHHHHHHHHSSSCEEEETTHHHHHHHHHHHHHHHHCCCC-------------CCCEEEHHHHHHHHTC-CSCCSHHH
T ss_pred CHHHHHHHHHHHHCCCEEEEECcHHHHHHHHHHHHHcCCCCC-------------CCCEEeHHHHHHHHhh-cCCCCHHH
Confidence 44444444433 3679999999999999876542 1 122 1247899887766542 13446777
Q ss_pred HHHHHHhcCCCCceeecCCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 006991 388 TIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSI 433 (622)
Q Consensus 388 ~~~~l~~~~~~~p~ve~~~~~~~~~~h~AGyDA~mTg~vF~~l~~~ 433 (622)
+.+.+. + +. ...|.|..||..|+.+|.+|...
T Consensus 144 l~~~~g--------i--~~----~~~H~Al~Da~~t~~l~~~l~~~ 175 (186)
T 2p1j_A 144 VVEKLG--------L--GP----FRHHRALDDARVTAQVFLRFVEM 175 (186)
T ss_dssp HHHHTT--------C--CS----TTCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcC--------C--CC----CCCcCHHHHHHHHHHHHHHHHHH
Confidence 666541 1 11 13699999999999999988664
No 13
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=95.95 E-value=0.012 Score=56.65 Aligned_cols=85 Identities=13% Similarity=0.135 Sum_probs=57.0
Q ss_pred CCEEechhHHHHH-HHHHhcc---CCCCCCHHHHHHHHHccCCCccchhhHHhhhCcc-cccCchHHHHHHHHhcCCCCc
Q 006991 326 KPLVAHNSLNDFT-FIHSKFL---APLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPV-KKMTNISATIAYLKNRFFAPI 400 (622)
Q Consensus 326 KpIVGHN~llDL~-~iy~~F~---gpLP~t~~EFk~~i~~lFP~I~DTKyLa~~~~~~-~~~~~L~~~~~~l~~~~~~~p 400 (622)
.++||||.=.|+- +|-..|- -++|. .+..++||+.++....+. ....+|..+.+.+.
T Consensus 106 ~~lv~hn~~fD~~~~L~~~~~~~~~~~p~-----------~~~~~~dt~~l~~~~~~~~~~~~~L~~l~~~~g------- 167 (204)
T 1w0h_A 106 KYSLLTDGSWDMSKFLNIQCQLSRLKYPP-----------FAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLG------- 167 (204)
T ss_dssp CEEEEESSTTTTHHHHHHHHHHHTCCCCG-----------GGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHTT-------
T ss_pred cEEEEEECcchHHHHHHHHHHHhCCCCcc-----------cccceEEHHHHHHHHhCCCCccchHHHHHHHcC-------
Confidence 4599999999995 8765542 23332 123689999888765332 12346777776551
Q ss_pred eeecCCCCCCCCcccchhhHHHHHHHHHHHHHHh
Q 006991 401 EMEIPNQANENEGKIHGHNVVKICQLFGKLCSIL 434 (622)
Q Consensus 401 ~ve~~~~~~~~~~h~AGyDA~mTg~vF~~l~~~l 434 (622)
+ + ..+..|.|-.||..|+.||.+|....
T Consensus 168 -i--~---~~~~~H~Al~Da~~ta~l~~~l~~~~ 195 (204)
T 1w0h_A 168 -M--D---YDGRPHCGLDDSKNIARIAVRMLQDG 195 (204)
T ss_dssp -C--C---CCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred -C--C---CCCCccCcHHHHHHHHHHHHHHHHCC
Confidence 1 1 11347999999999999999998753
No 14
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=95.76 E-value=0.023 Score=58.47 Aligned_cols=85 Identities=13% Similarity=0.124 Sum_probs=58.3
Q ss_pred CCEEechhHHHHH-HHHHhc--cC-CCCCCHHHHHHHHHccCCCccchhhHHhhhCccc-ccCchHHHHHHHHhcCCCCc
Q 006991 326 KPLVAHNSLNDFT-FIHSKF--LA-PLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVK-KMTNISATIAYLKNRFFAPI 400 (622)
Q Consensus 326 KpIVGHN~llDL~-~iy~~F--~g-pLP~t~~EFk~~i~~lFP~I~DTKyLa~~~~~~~-~~~~L~~~~~~l~~~~~~~p 400 (622)
+++||||.=+|+- +|-..| +| ++|. ++..++||+.+.....+.+ ...+|..+.+.+.
T Consensus 174 ~~lVahn~~fD~~~fL~~~~~~~g~~~p~-----------~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~g------- 235 (299)
T 1zbh_A 174 KYSLLTDGSWDMSKFLNIQCQLSRLKYPP-----------FAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLG------- 235 (299)
T ss_dssp CEEEEESSSHHHHTHHHHHHHHTTBCCCG-----------GGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHTT-------
T ss_pred cEEEEEeCHHHHHHHHHHHHHHcCCCCCc-----------ccchHHHHHHHHHHHhCCCCCCccHHHHHHHcC-------
Confidence 7999999999999 887655 22 4442 1235889988776542222 1356777776551
Q ss_pred eeecCCCCCCCCcccchhhHHHHHHHHHHHHHHh
Q 006991 401 EMEIPNQANENEGKIHGHNVVKICQLFGKLCSIL 434 (622)
Q Consensus 401 ~ve~~~~~~~~~~h~AGyDA~mTg~vF~~l~~~l 434 (622)
+ + ..+..|.|-.||..|+.||.+|....
T Consensus 236 -i--~---~~g~~H~Al~DA~ata~l~~~l~~~~ 263 (299)
T 1zbh_A 236 -M--D---YDGRPNCGLDDSKNIARIAVRMLQDG 263 (299)
T ss_dssp -C--C---CCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred -C--C---CCCCCCChHHHHHHHHHHHHHHHHhC
Confidence 1 1 11346999999999999999998765
No 15
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=95.56 E-value=0.012 Score=58.70 Aligned_cols=84 Identities=19% Similarity=0.194 Sum_probs=54.8
Q ss_pred CCEEechh-HHHHHHHHHhc--cC-CCCCCHHHHHHHHHccCC-CccchhhHHhhhC--------cccccCchHHHHHHH
Q 006991 326 KPLVAHNS-LNDFTFIHSKF--LA-PLPPNMNEFICSLRLAFP-QVIDVNYLLKDIG--------PVKKMTNISATIAYL 392 (622)
Q Consensus 326 KpIVGHN~-llDL~~iy~~F--~g-pLP~t~~EFk~~i~~lFP-~I~DTKyLa~~~~--------~~~~~~~L~~~~~~l 392 (622)
.++||||. -+|+-+|.+.| +| ++| .-+ .++||-.++..+. +-.+.-+|..+.+.+
T Consensus 119 ~~lVaHNav~FD~~fL~~~~~r~g~~~~------------~~~~~~iDtl~l~r~l~~~~~p~~~~~~~~~~L~~l~~~~ 186 (242)
T 3mxm_B 119 CCLVAHNGDRYDFPLLQTELARLSTPSP------------LDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRL 186 (242)
T ss_dssp EEEEETTTTTTHHHHHHHHHHTSSSCCT------------TTTCEEEEHHHHHHHHHHHHCC------CCCSHHHHHHHH
T ss_pred CEEEEcCChHhhHHHHHHHHHHcCCCCC------------ccCCeEeehHHHHHHHHhhcCccccCCCCCcCHHHHHHHH
Confidence 67999996 89999998776 33 222 011 3678877666432 112345788877652
Q ss_pred HhcCCCCceeecCCCCCCCCcccchhhHHHHHHHHHHHHHHh
Q 006991 393 KNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSIL 434 (622)
Q Consensus 393 ~~~~~~~p~ve~~~~~~~~~~h~AGyDA~mTg~vF~~l~~~l 434 (622)
-. ++. ...|.|-.||.+|+.||.+++..+
T Consensus 187 ~g---------i~~----~~~H~Al~Da~ata~l~~~~~~~~ 215 (242)
T 3mxm_B 187 YW---------QAP----TDSHTAEGDDLTLLSICQWKPQAL 215 (242)
T ss_dssp HS---------SCC----SSTTSHHHHHHHHHHHHTSSHHHH
T ss_pred hC---------CCC----CCCcChHHHHHHHHHHHHHHHHHH
Confidence 11 111 136999999999999999887754
No 16
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=95.30 E-value=0.058 Score=53.17 Aligned_cols=87 Identities=18% Similarity=0.127 Sum_probs=59.4
Q ss_pred CCCCEEechhHHHHHHHHHhc--cCCCCCCHHHHHHHHHccCC--CccchhhHHhhhCcccccCchHHHHHHHHhcCCCC
Q 006991 324 SQKPLVAHNSLNDFTFIHSKF--LAPLPPNMNEFICSLRLAFP--QVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAP 399 (622)
Q Consensus 324 skKpIVGHN~llDL~~iy~~F--~gpLP~t~~EFk~~i~~lFP--~I~DTKyLa~~~~~~~~~~~L~~~~~~l~~~~~~~ 399 (622)
.+.++||||.=.|+-+|...| +| ++. .-|+ .++||..++....| ..+|..+.+.+.
T Consensus 133 ~~~~lVahN~~fD~~~L~~~~~~~g-~~~----------~p~~~~~~~Dt~~la~~~~p---~~~L~~l~~~~g------ 192 (235)
T 3v9w_A 133 NRAIMVAHNANFDHSFMMAAAERAS-LKR----------NPFHPFATFDTAALAGLALG---QTVLSKACQTAG------ 192 (235)
T ss_dssp CEEEEEETTTHHHHHHHHHHHHHTT-CCC----------CCEEEEEEEEHHHHHHHHHS---CCSHHHHHHHHT------
T ss_pred CCcEEEEeChHHHHHHHHHHHHHcC-CCC----------CCCCCCcEEEhHHHHHHHhC---CCCHHHHHHHcC------
Confidence 468999999999999987654 12 210 0021 47899888876544 236777766652
Q ss_pred ceeecCCCCCCCCcccchhhHHHHHHHHHHHHHHhcc
Q 006991 400 IEMEIPNQANENEGKIHGHNVVKICQLFGKLCSILKI 436 (622)
Q Consensus 400 p~ve~~~~~~~~~~h~AGyDA~mTg~vF~~l~~~l~~ 436 (622)
+ +.. ....|.|..||.+|+.+|.+|...+..
T Consensus 193 --i--~~~--~~~~H~Al~DA~~ta~l~~~l~~~l~~ 223 (235)
T 3v9w_A 193 --M--DFD--STQAHSALYDTERTAVLFCEIVNRWKR 223 (235)
T ss_dssp --C--CCC--TTTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --C--CCC--CCCCcChHHHHHHHHHHHHHHHHHHHh
Confidence 1 110 124799999999999999999998743
No 17
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=95.07 E-value=0.059 Score=52.73 Aligned_cols=86 Identities=22% Similarity=0.229 Sum_probs=57.4
Q ss_pred CCCCEEechhHHHHHHHHHhcc--CCCCCCHHHHHHHHHccC-C-CccchhhHHhhhCcccccCchHHHHHHHHhcCCCC
Q 006991 324 SQKPLVAHNSLNDFTFIHSKFL--APLPPNMNEFICSLRLAF-P-QVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAP 399 (622)
Q Consensus 324 skKpIVGHN~llDL~~iy~~F~--gpLP~t~~EFk~~i~~lF-P-~I~DTKyLa~~~~~~~~~~~L~~~~~~l~~~~~~~ 399 (622)
.+.++||||.=.|+-+|.+.|- | ++. .-| + .++||..++....| ..+|..+.+.+.
T Consensus 125 ~~~~lV~hn~~FD~~fL~~~~~~~g-~~~----------~p~~~~~~iDt~~l~~~~~~---~~~L~~l~~~~g------ 184 (224)
T 2f96_A 125 KRAILVGHNSSFDLGFLNAAVARTG-IKR----------NPFHPFSSFDTATLAGLAYG---QTVLAKACQAAG------ 184 (224)
T ss_dssp SEEEEEETTHHHHHHHHHHHHHHHT-CCC----------CCEEEEEEEEHHHHHHHHHS---CCSHHHHHHHTT------
T ss_pred CCCEEEEeChhhhHHHHHHHHHHcC-CCc----------CCccccceeeHHHHHHHHcC---CCCHHHHHHHcC------
Confidence 4679999999999998876552 2 110 002 2 48899888776433 235666665541
Q ss_pred ceeecCCCCCCCCcccchhhHHHHHHHHHHHHHHhc
Q 006991 400 IEMEIPNQANENEGKIHGHNVVKICQLFGKLCSILK 435 (622)
Q Consensus 400 p~ve~~~~~~~~~~h~AGyDA~mTg~vF~~l~~~l~ 435 (622)
++ . .....|.|..||..|+.+|.+|...+.
T Consensus 185 --i~--~--~~~~~H~Al~Da~~ta~l~~~l~~~~~ 214 (224)
T 2f96_A 185 --ME--F--DNREAHSARYDTEKTAELFCGIVNRWK 214 (224)
T ss_dssp --CC--C--CTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred --CC--c--CCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 11 0 012479999999999999999988763
No 18
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=94.59 E-value=0.054 Score=56.35 Aligned_cols=94 Identities=19% Similarity=0.231 Sum_probs=57.7
Q ss_pred HHHHHHHhC--CCCEEech-hHHHHHHHHHhc--cC-CCCCCHHHHHHHHHccCC-CccchhhHHhhh----Ccc----c
Q 006991 316 EVIDLISAS--QKPLVAHN-SLNDFTFIHSKF--LA-PLPPNMNEFICSLRLAFP-QVIDVNYLLKDI----GPV----K 380 (622)
Q Consensus 316 ~Vi~~L~~s--kKpIVGHN-~llDL~~iy~~F--~g-pLP~t~~EFk~~i~~lFP-~I~DTKyLa~~~----~~~----~ 380 (622)
.+.+.|... ..++|||| .-+|+-||-+.| +| ++|. .+ ..+||--++..+ .|- .
T Consensus 107 ~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~------------~~~~~iDTL~l~r~L~r~~~P~~~~~~ 174 (314)
T 3u3y_B 107 LLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPL------------DGTFCVDSIAALKALEQASSPSGNGSR 174 (314)
T ss_dssp HHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTT------------TTCEEEEHHHHHHHHHTTC-------C
T ss_pred HHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCC------------CCceEEeHHHHHHHHHHHhCccccccC
Confidence 344444442 36899999 789999998766 23 2220 01 256775544322 111 1
Q ss_pred ccCchHHHHHHHHhcCCCCceeecCCCCCCCCcccchhhHHHHHHHHHHHHHHh
Q 006991 381 KMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSIL 434 (622)
Q Consensus 381 ~~~~L~~~~~~l~~~~~~~p~ve~~~~~~~~~~h~AGyDA~mTg~vF~~l~~~l 434 (622)
+.-+|+.+.+.+-. + +. ...|.|-.||.+|+.||.+++..+
T Consensus 175 ~~~~L~~L~~~l~g-------i--~~----~~aHrAl~DA~ata~lf~~l~~~~ 215 (314)
T 3u3y_B 175 KSYSLGSIYTRLYW-------Q--AP----TDSHTAEGHVLTLLSICQWKPQAL 215 (314)
T ss_dssp CCCSHHHHHHHHHS-------S--CC----SCSSSHHHHHHHHHHHHHSSHHHH
T ss_pred CCCCHHHHHHHhcC-------C--CC----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34578888876311 1 11 237999999999999999988755
No 19
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=94.32 E-value=0.084 Score=55.69 Aligned_cols=106 Identities=14% Similarity=0.161 Sum_probs=69.4
Q ss_pred HhhhhccccHHHHHHHH----HhC-----CCCEEechhHHHHH-HHHHhc--cC-CCCCCHHHHHHHHHccCCCccchhh
Q 006991 305 FEQNKRVRGFREVIDLI----SAS-----QKPLVAHNSLNDFT-FIHSKF--LA-PLPPNMNEFICSLRLAFPQVIDVNY 371 (622)
Q Consensus 305 ~e~~~~~~GFr~Vi~~L----~~s-----kKpIVGHN~llDL~-~iy~~F--~g-pLP~t~~EFk~~i~~lFP~I~DTKy 371 (622)
.+.+..+.-|..|++.+ .+. ++++||||.=+|+- +|...| +| ++|. ++-.++||+.
T Consensus 194 ~e~v~~ap~~~eVl~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~-----------~~~~~iDt~~ 262 (349)
T 1zbu_A 194 QDQVDRADTFPQVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPP-----------FAKKWINIRK 262 (349)
T ss_dssp HHHHHTSEEHHHHHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCG-----------GGSEEEEHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCcc-----------ccchHHHHHH
Confidence 34455666777777654 333 16999999999999 887654 22 3442 1224789988
Q ss_pred HHhhhCcccc-cCchHHHHHHHHhcCCCCceeecCCCCCCCCcccchhhHHHHHHHHHHHHHHh
Q 006991 372 LLKDIGPVKK-MTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSIL 434 (622)
Q Consensus 372 La~~~~~~~~-~~~L~~~~~~l~~~~~~~p~ve~~~~~~~~~~h~AGyDA~mTg~vF~~l~~~l 434 (622)
++....+.+. ..+|..+.+.+. + + ..+..|.|-.||..|+.||.+|....
T Consensus 263 l~~~~~~~~~~~~~L~~l~~~~g--------i--~---~~g~~HrAl~DA~ata~ll~~ll~~~ 313 (349)
T 1zbu_A 263 SYGNFYKVPRSQTKLTIMLEKLG--------M--D---YDGRPHCGLDDSKNIARIAVRMLQDG 313 (349)
T ss_dssp HHHHHHTCCGGGGSHHHHHHHTT--------C--C---CCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCCCCCHHHHHHHcC--------C--C---CCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 7765422221 246777776551 1 1 11246999999999999999998765
No 20
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=94.19 E-value=0.1 Score=51.11 Aligned_cols=85 Identities=13% Similarity=0.073 Sum_probs=50.4
Q ss_pred CCCEEechh--------HHHHHHHH-Hhc--cC-CCCCCHHHHHHHHHccCCCccchhhHHhhhCcccccCchHHHHHHH
Q 006991 325 QKPLVAHNS--------LNDFTFIH-SKF--LA-PLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYL 392 (622)
Q Consensus 325 kKpIVGHN~--------llDL~~iy-~~F--~g-pLP~t~~EFk~~i~~lFP~I~DTKyLa~~~~~~~~~~~L~~~~~~l 392 (622)
+.++||||. =.|+-+|. ..+ .| ++|. .|-..+|++..........+..+|..+.+.+
T Consensus 117 ~~~lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~-----------~~~~~iD~~~~~~~~~~~~p~~~L~~l~~~~ 185 (224)
T 2xri_A 117 KEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVAD-----------YFKQWINLKKAYSFAMGCWPKNGLLDMNKGL 185 (224)
T ss_dssp HTTTTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCG-----------GGSCEEEHHHHHHHHHTSCCTTTHHHHHHHT
T ss_pred hcccccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcc-----------cccceEeHHHHHHHHhccCCCCCHHHHHHHc
Confidence 458999999 89998744 222 22 3332 1235778543222111111124566666654
Q ss_pred HhcCCCCceeecCCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 006991 393 KNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSI 433 (622)
Q Consensus 393 ~~~~~~~p~ve~~~~~~~~~~h~AGyDA~mTg~vF~~l~~~ 433 (622)
. + +. .+..|.|-.||..|+.||.+|...
T Consensus 186 g--------i--~~---~~~~H~Al~DA~~ta~l~~~l~~~ 213 (224)
T 2xri_A 186 S--------L--QH---IGRPHSGIDDCKNIANIMKTLAYR 213 (224)
T ss_dssp T--------C--CC---CSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred C--------C--CC---CCCCcChHHHHHHHHHHHHHHHHc
Confidence 1 1 11 135799999999999999999863
No 21
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=93.86 E-value=0.11 Score=51.15 Aligned_cols=84 Identities=17% Similarity=0.219 Sum_probs=53.2
Q ss_pred CCCEEechh-HHHHHHHHHhcc--C-CCCCCHHHHHHHHHccCCCccchhhHHhhhC---------cccccCchHHHHHH
Q 006991 325 QKPLVAHNS-LNDFTFIHSKFL--A-PLPPNMNEFICSLRLAFPQVIDVNYLLKDIG---------PVKKMTNISATIAY 391 (622)
Q Consensus 325 kKpIVGHN~-llDL~~iy~~F~--g-pLP~t~~EFk~~i~~lFP~I~DTKyLa~~~~---------~~~~~~~L~~~~~~ 391 (622)
+.++||||. =+|+-+|-+.|- | ++|.. -.++||-.|+.... |-.+..+|..+.+.
T Consensus 113 ~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~------------~~~iDt~~l~~~~~~~~~p~~~~p~~~~~~L~~l~~~ 180 (238)
T 1y97_A 113 PICLVAHNGFDYDFPLLCAELRRLGARLPRD------------TVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHR 180 (238)
T ss_dssp SEEEEETTTTTTHHHHHHHHHHHHTCCCCTT------------CEEEEHHHHHHHHHHHC----------CCSHHHHHHH
T ss_pred CCEEEecCchhhhHHHHHHHHHHcCCCCCCC------------CEEEEHHHHHHHHHhccCccccCCCCCCCCHHHHHHH
Confidence 378999999 899999886552 2 22210 13789977776553 22234567777773
Q ss_pred -HHhcCCCCceeecCCCCCCCCcccchhhHHHHHHHHHHHHHHh
Q 006991 392 -LKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSIL 434 (622)
Q Consensus 392 -l~~~~~~~p~ve~~~~~~~~~~h~AGyDA~mTg~vF~~l~~~l 434 (622)
+. + + ....|.|-.||.+|+.+|.+|...+
T Consensus 181 ~~g--------i--~----~~~~H~Al~Da~~ta~l~~~l~~~~ 210 (238)
T 1y97_A 181 YFR--------A--E----PSAAHSAEGDVHTLLLIFLHRAAEL 210 (238)
T ss_dssp HHS--------S--C----CC---CHHHHHHHHHHHHHHTHHHH
T ss_pred HhC--------C--C----CccCccHHHHHHHHHHHHHHHHHHH
Confidence 42 1 1 1236999999999999999987644
No 22
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=92.76 E-value=0.08 Score=54.77 Aligned_cols=99 Identities=14% Similarity=0.206 Sum_probs=59.8
Q ss_pred cccHHHHHHHHHh--CCCCEEechh------HHHH-HHHHHhc--cC-CCCCCHHHHHHHHHccCCCccchhhHHhhhCc
Q 006991 311 VRGFREVIDLISA--SQKPLVAHNS------LNDF-TFIHSKF--LA-PLPPNMNEFICSLRLAFPQVIDVNYLLKDIGP 378 (622)
Q Consensus 311 ~~GFr~Vi~~L~~--skKpIVGHN~------llDL-~~iy~~F--~g-pLP~t~~EFk~~i~~lFP~I~DTKyLa~~~~~ 378 (622)
+.-|..|++.+.+ .+.++||||. =+|+ .+|.+.| +| ++|. .|...+||+.++....+
T Consensus 92 ap~~~evl~~f~~~l~~~~lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~-----------~~~~~iDt~~l~~~~~~ 160 (308)
T 3cg7_A 92 ADTFDVVYEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPA-----------FFRQYINLYKIFTNEMD 160 (308)
T ss_dssp SCBHHHHHHHHHHHHHHHCCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCG-----------GGSEEEEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcCCcceEEeccCcccHHHHHHHHHHHcCCCCch-----------hhcceeeHHHHHHHHhc
Confidence 3445555544432 2345789998 7899 5776544 22 3332 22357899887765432
Q ss_pred ccc------cCchHHHHHHHHhcCCCCceeecCCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 006991 379 VKK------MTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSI 433 (622)
Q Consensus 379 ~~~------~~~L~~~~~~l~~~~~~~p~ve~~~~~~~~~~h~AGyDA~mTg~vF~~l~~~ 433 (622)
... ..+|..+.+.+. + + ..+..|.|-.||..|+.+|.+|...
T Consensus 161 ~~~~~~~~~~~~L~~l~~~~g--------i--~---~~~~~HrAl~DA~ata~l~~~l~~~ 208 (308)
T 3cg7_A 161 RMGPKELSATTNIGKMNEYYD--------L--P---TIGRAHDAMDDCLNIATILQRMINM 208 (308)
T ss_dssp HHCCCCCCCCSHHHHHHHHTT--------C--C---CCSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred cccccccccCcCHHHHHHHcC--------C--C---CCCCCcCHHHHHHHHHHHHHHHHHc
Confidence 211 245777766551 1 1 1134599999999999999998763
No 23
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=92.15 E-value=0.64 Score=43.46 Aligned_cols=74 Identities=14% Similarity=0.202 Sum_probs=46.7
Q ss_pred CCCEEechhHHHHHHHHHhccCCCCCCHHHHHHHHHccCC-Cccchhh---HHhhhCcccccCchHHHHHHHHhcCCCCc
Q 006991 325 QKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP-QVIDVNY---LLKDIGPVKKMTNISATIAYLKNRFFAPI 400 (622)
Q Consensus 325 kKpIVGHN~llDL~~iy~~F~gpLP~t~~EFk~~i~~lFP-~I~DTKy---La~~~~~~~~~~~L~~~~~~l~~~~~~~p 400 (622)
+.++||||.-+|+-+|...|- .+ ...|+ .++|+.. |+....| . + ..
T Consensus 100 ~~~lv~hn~~fD~~fL~~~~~--------~~----~~~~~~~~~d~~tl~~l~~~~~p--~---~-------~~------ 149 (180)
T 2igi_A 100 KSPICGNSIGQDRRFLFKYMP--------EL----EAYFHYRYLDVSTLKELARRWKP--E---I-------LD------ 149 (180)
T ss_dssp TSCEEESSHHHHHHHHHHHCH--------HH----HHHSCSCEEETHHHHHHHHHHCG--G---G-------GG------
T ss_pred CceEEecCHHHHHHHHHHHHH--------Hh----ccCCCcceeeHHHHHHHHHHhCh--H---h-------hh------
Confidence 369999999999999987652 11 12233 3788332 3433322 0 0 00
Q ss_pred eeecCCCCCCCCcccchhhHHHHHHHHHHHHHHh
Q 006991 401 EMEIPNQANENEGKIHGHNVVKICQLFGKLCSIL 434 (622)
Q Consensus 401 ~ve~~~~~~~~~~h~AGyDA~mTg~vF~~l~~~l 434 (622)
.++ ....|.|-.||..|+.+|.++...+
T Consensus 150 --~i~----~~~~H~Al~Da~ata~l~~~~~~~~ 177 (180)
T 2igi_A 150 --GFT----KQGTHQAMDDIRESVAELAYYREHF 177 (180)
T ss_dssp --GSC----CCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred --CCC----CcCCcCcHHHHHHHHHHHHHHHHHh
Confidence 011 1347999999999999999887755
No 24
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.62 E-value=0.28 Score=42.24 Aligned_cols=63 Identities=13% Similarity=0.248 Sum_probs=50.9
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccc-eEEEEecCceEEEEecCCCchhHHHHHhhhcc
Q 006991 485 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEA-FNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKA 550 (622)
Q Consensus 485 ~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~-~~V~~id~t~a~V~~~~~~~~~~~l~~~~~~~ 550 (622)
+....+|+-.-|..++..+|++.|. ++|+++ +.|.-|-...|||.|.+.+.|...++.++...
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~---~lF~~yGG~Vl~VtgG~AfV~F~~~esA~~A~~~l~G~~ 70 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLR---RLSDNCGGKVLSITGCSAILRFINQDSAERAQKRMENED 70 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHH---HHHHTTTCCEEECCTTCEEEEESSHHHHHHHHHHHTTCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHH---HHHHHcCCeeEEEecCEEEEEECCHHHHHHHHHHhcCCc
Confidence 3455588889999999999998776 477777 36666666889999999999999998887765
No 25
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=90.32 E-value=1.6 Score=41.59 Aligned_cols=73 Identities=12% Similarity=0.222 Sum_probs=45.9
Q ss_pred CEEechhHHHHHHHHHhccCCCCCCHHHHHHHHHccCCCccchhhHH---hhhCcccccCchHHHHHHHHhcCCCCceee
Q 006991 327 PLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLL---KDIGPVKKMTNISATIAYLKNRFFAPIEME 403 (622)
Q Consensus 327 pIVGHN~llDL~~iy~~F~gpLP~t~~EFk~~i~~lFP~I~DTKyLa---~~~~~~~~~~~L~~~~~~l~~~~~~~p~ve 403 (622)
|+||||.-+|+-||-+.|- .+. ..+....+||..|. ....| + +.. .+
T Consensus 106 ~lvghn~~FD~~fL~~~~~--------~~~---~~~~~~~~d~~~l~~l~~~~~p--~----------~~~------~i- 155 (194)
T 2gbz_A 106 PMCGNSICQDRRFLHRQMS--------RLE---RYFHYRNLDVSTIKELARRWAP--A----------VAS------GF- 155 (194)
T ss_dssp CEEESSHHHHHHHHHHHCH--------HHH---HHSCSCEEEHHHHHHHHHHHCG--G----------GGT------TC-
T ss_pred eEEecCHHHhHHHHHHHHH--------Hhc---ccCCCccccHHHHHHHHHHhCH--H----------HHh------CC-
Confidence 5999999999999987651 111 12233477886432 22111 0 110 01
Q ss_pred cCCCCCCCCcccchhhHHHHHHHHHHHHHHh
Q 006991 404 IPNQANENEGKIHGHNVVKICQLFGKLCSIL 434 (622)
Q Consensus 404 ~~~~~~~~~~h~AGyDA~mTg~vF~~l~~~l 434 (622)
.....|.|-.||..|+.+|..+...+
T Consensus 156 -----~~~~~H~Al~Da~ata~ll~~~~~~~ 181 (194)
T 2gbz_A 156 -----AKSSAHTALSDVRDSIDELRHYRQFM 181 (194)
T ss_dssp -----CCCSCCSHHHHHHHHHHHHHHHHTTS
T ss_pred -----CCCCCcccHHHHHHHHHHHHHHHHHh
Confidence 11346999999999999998888765
No 26
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.28 E-value=0.67 Score=37.95 Aligned_cols=61 Identities=13% Similarity=0.136 Sum_probs=45.3
Q ss_pred CCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCceEEEEecCCCchhHHHHHhhhc
Q 006991 484 VSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 484 ~~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
+.....||+-+.|..++..+|++.+++ ||+..+|..+.+ .+||.|.+.+.|...+..++..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~----~G~v~~~~~~~~-~afV~f~~~~~a~~A~~~l~g~ 66 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFER----RGRVIECDVVKD-YAFVHMEKEADAKAAIAQLNGK 66 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHH----HSCEEEEEECSS-CEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHc----CCCEEEEEEECC-EEEEEECCHHHHHHHHHHhCCC
Confidence 344567888899999998888776553 444346666644 9999999999999888876553
No 27
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.21 E-value=0.92 Score=38.65 Aligned_cols=63 Identities=13% Similarity=0.068 Sum_probs=48.2
Q ss_pred CCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCceEEEEecCCCchhHHHHHhhhcc
Q 006991 484 VSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKA 550 (622)
Q Consensus 484 ~~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t~a~V~~~~~~~~~~~l~~~~~~~ 550 (622)
.....-|||-+.|..++..+|++.++ -|++..+|..+-+..|||.|.+.+.|...+..++...
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~----~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~ 74 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMR----EAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTK 74 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHG----GGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH----hcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCC
Confidence 34567888899999999888776554 3444457777777899999999999998888776543
No 28
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=89.05 E-value=0.61 Score=45.37 Aligned_cols=54 Identities=15% Similarity=0.148 Sum_probs=40.9
Q ss_pred HHHhhcCCCeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhhcccceeEEeeeeecC--CCceeeEeeEEeecCc
Q 006991 44 IKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPR 120 (622)
Q Consensus 44 i~~~I~~a~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~--~~~y~~~~fNF~lfp~ 120 (622)
+.+.+.+..||+||+|.||+.+. .-.|+|+|+..+..+ +.-.....|+.++-|.
T Consensus 22 ~~~~~~~~~~vviD~ETTGl~~~-----------------------~~~IieIg~v~~~~~~~g~i~~~~~f~~lV~P~ 77 (224)
T 2f96_A 22 MARRFRGYLPVVVDVETGGFNSA-----------------------TDALLEIAATTVGMDEKGFLFPEHTYFFRIEPF 77 (224)
T ss_dssp HHHHTTTEEEEEEEEEESSSCTT-----------------------TBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCC
T ss_pred hhccccCCcEEEEEeeCCCCCCC-----------------------CCeeEEEEEEEEEEcCCCcccccceEEEEECCC
Confidence 46677888999999999998321 235999999998853 3323578899999884
No 29
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=88.11 E-value=0.46 Score=46.58 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=42.0
Q ss_pred HHHHHHHhhcCCCeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhhcccceeEEeeeeecC--CCceeeEeeEEee
Q 006991 40 SLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQ--ASKVIAYPYNFHL 117 (622)
Q Consensus 40 ~l~~i~~~I~~a~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~--~~~y~~~~fNF~l 117 (622)
.+..+...+.+..||+||+|.||+.+. .-.|+|+|+..+..+ +.-.....|+.++
T Consensus 26 ~~~~l~~~l~~~~~vviD~ETTGl~~~-----------------------~~~IieIgav~~~~~~~g~i~~~~~f~~~v 82 (235)
T 3v9w_A 26 QLTGLCDRFRGFYPVVIDVETAGFNAK-----------------------TDALLEIAAITLKMDEQGWLMPDTTLHFHV 82 (235)
T ss_dssp ---CHHHHTTTEEEEEEEEEESSSCTT-----------------------TBCEEEEEEEEEEECTTSCEEEEEEEEEEB
T ss_pred cccCchhcccCCcEEEEEEeCCCCCCC-----------------------CCeEEEEEEEEEEEcCCCcccccceEEEEE
Confidence 445566788999999999999999321 235999999988753 3323578899998
Q ss_pred cCc
Q 006991 118 FPR 120 (622)
Q Consensus 118 fp~ 120 (622)
-|.
T Consensus 83 ~P~ 85 (235)
T 3v9w_A 83 EPF 85 (235)
T ss_dssp CCC
T ss_pred CCC
Confidence 884
No 30
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.79 E-value=1.3 Score=37.05 Aligned_cols=62 Identities=19% Similarity=0.224 Sum_probs=46.5
Q ss_pred CCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc-------eEEEEecCCCchhHHHHHhhhc
Q 006991 484 VSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 484 ~~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
......|||-+.|..++..+|++.+++ |++...|..+-+. .|||.|.+.+.|...+..++..
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~----~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 77 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSK----YGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK 77 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHH----HSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh----cCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 345678888999999998888876654 4443467776542 7999999999999888776654
No 31
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=86.20 E-value=1.1 Score=36.98 Aligned_cols=63 Identities=17% Similarity=0.300 Sum_probs=46.6
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEec----CceEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD----RSCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id----~t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
...+|+-+.|..++..+|++.|..++.-||+..+|.... ...|||.|.+.+.|...+..++..
T Consensus 8 ~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 74 (97)
T 1nu4_A 8 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGF 74 (97)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCC
Confidence 467888899999999999977666555555533555442 347999999999999888877654
No 32
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.13 E-value=1.1 Score=37.49 Aligned_cols=59 Identities=20% Similarity=0.296 Sum_probs=43.5
Q ss_pred CCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc-------eEEEEecCCCchhHHHHHhhhc
Q 006991 484 VSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 484 ~~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
+.....|||-+.|..++..+|++ +|+.++.|..+-+. .|||.|.+.+.|...+..++..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~-------~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 77 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKE-------SFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG 77 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHH-------TSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCCccCHHHHHH-------HhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC
Confidence 33456677789999998888665 45555566666442 6999999999999888877654
No 33
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.59 E-value=1.5 Score=36.41 Aligned_cols=63 Identities=16% Similarity=0.072 Sum_probs=47.3
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEec----CceEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD----RSCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id----~t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
..-+||-+.|..++..+|++.|..++.-||+..+|..+- ...|||.|.+.+.|...+..++..
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~ 75 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRY 75 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCC
Confidence 456888899999999999866666555666545666663 346999999999999888877654
No 34
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.81 E-value=1.2 Score=37.20 Aligned_cols=63 Identities=14% Similarity=0.151 Sum_probs=45.6
Q ss_pred CCCCCCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC------ceEEEEecCCCchhHHHHHhhhc
Q 006991 480 DKRKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 480 ~~~~~~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
..+.......|||-+.|..++..+|++ +|++++.|..+.+ ..|||.|.+.+.|...+..++..
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~-------~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 76 (101)
T 2fc9_A 8 NSTWSGESKTLVLSNLSYSATEETLQE-------VFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKR 76 (101)
T ss_dssp CCCCSCCCSEEEEESCCTTCCHHHHHH-------HCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSE
T ss_pred CccCCCCCCEEEEeCCCCCCCHHHHHH-------HHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCC
Confidence 333444567888899999999888665 4555556655544 36999999999999888766553
No 35
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.46 E-value=1.8 Score=36.27 Aligned_cols=63 Identities=8% Similarity=0.097 Sum_probs=44.9
Q ss_pred CCCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc-------eEEEEecCCCchhHHHHHhhhc
Q 006991 483 KVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 483 ~~~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
.......|||-+.|..++..+|++.++ -|++..+|..+-+. .|||.|.+.+.|...+..++..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 80 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFR----PFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGF 80 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTST----TTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH----hCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCC
Confidence 344567788899999998888765443 34443466666542 6999999999999888766543
No 36
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=84.28 E-value=2 Score=36.75 Aligned_cols=64 Identities=14% Similarity=0.184 Sum_probs=44.7
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc----------eEEEEecCCCchhHHHHHhhhc
Q 006991 485 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS----------CAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 485 ~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t----------~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
...+.|||-+.|..++..+|+. +..++.-||+-.+|...-+. .|||.|.+.+.|...+..++..
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~-~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~ 86 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLK-RPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNV 86 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHH-STTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTE
T ss_pred cCCCEEEEECCCCCCCHHHHHH-HHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCC
Confidence 3467888899999988888762 12233344443466665442 7999999999999888877654
No 37
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.07 E-value=2.2 Score=34.81 Aligned_cols=63 Identities=14% Similarity=0.144 Sum_probs=45.1
Q ss_pred CCCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 006991 483 KVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 483 ~~~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
.+.....|||-+.|..++..+|++.+++ |++..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~----~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 80 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSK----YGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM 80 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHT----TSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHh----cCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 3445677888999999998888776553 444346665532 26999999999999888776543
No 38
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.02 E-value=2.1 Score=35.04 Aligned_cols=61 Identities=7% Similarity=0.071 Sum_probs=45.5
Q ss_pred CCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCceEEEEecCCCchhHHHHHhhhc
Q 006991 484 VSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 484 ~~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
+.....+||-+.|..++..+|++.++ -||+..+|..+-+ .|||.|.+.+.|...+..++..
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~----~~G~v~~v~~~~~-~afV~f~~~~~a~~A~~~l~g~ 67 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFE----EYGPVIECDIVKD-YAFVHMERAEDAVEAIRGLDNT 67 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHH----TTSCCCEEEECSS-EEEEEESCHHHHHHHHHHHTTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEECC-EEEEEECCHHHHHHHHHHhCCC
Confidence 33456788889999999888876555 3454346666644 9999999999999888777654
No 39
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=83.90 E-value=2.5 Score=36.05 Aligned_cols=62 Identities=18% Similarity=0.158 Sum_probs=45.6
Q ss_pred CCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 006991 484 VSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 484 ~~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
......|||-+.|..++..+|++.++ -||...+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 80 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFA----PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 80 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHG----GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 34566788899999999888877655 3444346666654 26999999999999888766543
No 40
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.86 E-value=3.7 Score=34.19 Aligned_cols=62 Identities=13% Similarity=0.109 Sum_probs=45.4
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhcc
Q 006991 485 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSKA 550 (622)
Q Consensus 485 ~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~~ 550 (622)
.....|||-+.|..++..+|++.++ -|++..+|..+-+ ..|||.|.+.+.|...+..++...
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 79 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFE----KYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAE 79 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHT----TTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHH----hcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCE
Confidence 3457888899999999888776554 3444346666533 369999999999998888776543
No 41
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.84 E-value=3.2 Score=34.59 Aligned_cols=62 Identities=13% Similarity=0.210 Sum_probs=45.4
Q ss_pred CCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-----ceEEEEecCCCchhHHHHHhhhc
Q 006991 484 VSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-----SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 484 ~~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-----t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
......|||-+.|..++..+|++.++ -|++..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~----~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 78 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFG----QFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGT 78 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGG----GTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 34567888899999999888776554 3444346666644 36999999999999888766543
No 42
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.66 E-value=1.9 Score=36.18 Aligned_cols=63 Identities=16% Similarity=0.209 Sum_probs=46.1
Q ss_pred CCCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc-------eEEEEecCCCchhHHHHHhhhc
Q 006991 483 KVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 483 ~~~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
.......|||-+.|..++..+|++.++ -|++..+|..+-+. .|||.|.+.+.|...+..++..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 80 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFL----QAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMI 80 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHH----TTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCC
Confidence 334567888899999999888776555 34443466666553 7999999999998887766543
No 43
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=83.49 E-value=2.3 Score=37.91 Aligned_cols=64 Identities=13% Similarity=0.198 Sum_probs=47.3
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEec----CceEEEEecCCCchhHHHHHhhhcc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD----RSCAIVVFGKPGLSNTFKNVMNSKA 550 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id----~t~a~V~~~~~~~~~~~l~~~~~~~ 550 (622)
...+||-+.|..++..+|+..|..++.-||+-.+|.... ...|||.|.+.+.|...+..++...
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~ 96 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYP 96 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCE
Confidence 457888889999998999888776666666544554322 2369999999999998888776543
No 44
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=82.63 E-value=1.9 Score=37.20 Aligned_cols=61 Identities=13% Similarity=0.082 Sum_probs=46.0
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCceEEEEecCCCchhHHHHHhhhcc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKA 550 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t~a~V~~~~~~~~~~~l~~~~~~~ 550 (622)
...-|||-+.|..++..+|++.++ -|++..+|..+-+..+||.|.+.+.|...+..++...
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~----~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~ 75 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMR----EAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTK 75 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHG----GGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCB
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 457788889999999888776544 4444357777777899999999999998888776644
No 45
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=81.84 E-value=1.6 Score=41.06 Aligned_cols=48 Identities=15% Similarity=0.296 Sum_probs=31.7
Q ss_pred hhcCCCeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhhcccceeEEeeeeecCCCceeeEeeEEeecCc
Q 006991 47 HISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPR 120 (622)
Q Consensus 47 ~I~~a~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~~~y~~~~fNF~lfp~ 120 (622)
.+.+..||+||+|.||+.+. .=.|+|+|...+. ++ . ....|+.++-|.
T Consensus 8 ~l~~~~~v~iD~ETTGl~~~-----------------------~~~IieIg~v~~~-~g-~-i~~~f~~lv~P~ 55 (186)
T 2p1j_A 8 TFGDATFVVLDFETTGLDPQ-----------------------VDEIIEIGAVKIQ-GG-Q-IVDEYHTLIKPS 55 (186)
T ss_dssp -----CEEEEEEEESCSCTT-----------------------TCCEEEEEEEEEE-TT-E-EEEEEEEECBCS
T ss_pred cCcCCCEEEEEEECCCCCCC-----------------------CCeEEEEEEEEEE-CC-E-EEEEEEEEECcC
Confidence 35678999999999998321 1149999998875 22 2 346788888885
No 46
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=81.83 E-value=2.1 Score=35.86 Aligned_cols=61 Identities=10% Similarity=0.273 Sum_probs=45.5
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 006991 485 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 485 ~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
.....|||-+.|..++..+|++.+++ ||+..+|..+-+ ..|||.|.+.+.|...+.+++..
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~----~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 78 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEE----FGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQ 78 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHH----HSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh----cCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCC
Confidence 34567888899999998888876654 444346666653 36999999999999888877654
No 47
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.25 E-value=2.8 Score=33.50 Aligned_cols=57 Identities=18% Similarity=0.331 Sum_probs=42.2
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEec-CceEEEEecCCCchhHHHHHh
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD-RSCAIVVFGKPGLSNTFKNVM 546 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id-~t~a~V~~~~~~~~~~~l~~~ 546 (622)
....+|+-+.|..++..+|++.++ -||+-.+|..+- ...|||.|.+.+.|...+..+
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~----~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFY----QFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 68 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHH----TTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTT
T ss_pred CccEEEEcCCCCCCCHHHHHHHHH----hCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHh
Confidence 456778889999999888876554 344434565554 457999999999998877755
No 48
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=81.20 E-value=4.2 Score=34.74 Aligned_cols=59 Identities=20% Similarity=0.226 Sum_probs=43.2
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEec-CceEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD-RSCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id-~t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
..+||+-+.|..++-.+|++.++ -||+..+|..+. ...|||.|.+.+.|...+..++..
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~----~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~ 74 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALE----KFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADV 74 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHT----TTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH----hCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccC
Confidence 46899899999988888765433 444434665553 467999999999999888876543
No 49
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.03 E-value=3.7 Score=33.54 Aligned_cols=60 Identities=12% Similarity=0.247 Sum_probs=44.6
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc-------eEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....|||-+.|..++..+|++.++ -|++..+|..+-+. .|||.|.+.+.|...+..++..
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~----~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 70 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFE----PFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGF 70 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHT----TTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHH----hcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCC
Confidence 356788889999999888776554 34443466666542 7999999999999888877654
No 50
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=80.99 E-value=1.8 Score=40.40 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=32.8
Q ss_pred CCCeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhhcccceeEEeeeeecCCCceeeEeeEEeecCc
Q 006991 50 SSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPR 120 (622)
Q Consensus 50 ~a~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~~~y~~~~fNF~lfp~ 120 (622)
+..||+||+|.||+.+. .-.|+|+|...++.++ .-....|+.++-|.
T Consensus 4 ~~~~v~iD~ETTGl~~~-----------------------~~~IieIg~v~~~~~~-~~~~~~~~~lv~P~ 50 (180)
T 2igi_A 4 ENNLIWIDLEMTGLDPE-----------------------RDRIIEIATLVTDANL-NILAEGPTIAVHQS 50 (180)
T ss_dssp GGCEEEEEEEESSSCTT-----------------------TCCEEEEEEEEECTTC-CEEEEEEEEECCCC
T ss_pred CCcEEEEEeeCCCCCCC-----------------------CCceEEEEEEEEcCCC-cEecCCcceEECCC
Confidence 34799999999998321 1259999998665332 23344589988885
No 51
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.92 E-value=3.1 Score=33.93 Aligned_cols=61 Identities=11% Similarity=0.271 Sum_probs=44.1
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 006991 485 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 485 ~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
.....|||-+.|..++..+|++.++ -|++..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~----~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 81 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFS----KYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNK 81 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTT----TTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHH----hcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCC
Confidence 3456788899999999888776554 3444346666543 26999999999999888766543
No 52
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.91 E-value=3.3 Score=34.51 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=44.7
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC------ceEEEEecCCCchhHHHHHhhhc
Q 006991 485 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 485 ~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
.....|||-+.|..++..+|++.+++ .|+...+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~---~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 74 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVK---VYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGA 74 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHH---HCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHH---hCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCC
Confidence 34567888899999998888776553 1554446665543 36999999999999888766543
No 53
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=80.82 E-value=3 Score=34.93 Aligned_cols=58 Identities=19% Similarity=0.315 Sum_probs=43.6
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCceEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
...|||-+.|..++..+|++.+++ |++..+|..+ ...|||.|.+.+.|...+..++..
T Consensus 11 ~~~l~V~nl~~~~t~~~l~~~F~~----~G~i~~v~~~-~~~afV~f~~~~~a~~A~~~l~g~ 68 (103)
T 2dgu_A 11 VKVLFVRNLANTVTEEILEKAFSQ----FGKLERVKKL-KDYAFIHFDERDGAVKAMEEMNGK 68 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHH----HSCEEEEEEC-SSCEEEEESSHHHHHHHHHHHTTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh----cCCEEEEEEE-CCEEEEEeCCHHHHHHHHHHHCCC
Confidence 467888899999998888775553 4443455554 558999999999999888877654
No 54
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=80.61 E-value=3.2 Score=33.22 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=43.7
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
...||+-+.|..++..+|++.+++ ||+..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~----~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 71 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAP----FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 71 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGG----GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHh----cCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 456788899999998888776553 444346666654 26999999999999888766543
No 55
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=80.59 E-value=5.1 Score=33.38 Aligned_cols=61 Identities=13% Similarity=0.189 Sum_probs=45.2
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC------ceEEEEecCCCchhHHHHHhhhcc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR------SCAIVVFGKPGLSNTFKNVMNSKA 550 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~------t~a~V~~~~~~~~~~~l~~~~~~~ 550 (622)
....|||-+.|..++..+|++.++ -||+...|..+.+ ..|||.|.+.+.|...+.+++...
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 80 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQ----PFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQ 80 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHT----TTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCc
Confidence 357788889999999888776554 3444346666654 469999999999998888776543
No 56
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.00 E-value=3.8 Score=33.24 Aligned_cols=58 Identities=3% Similarity=0.163 Sum_probs=43.5
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCceEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
..-+|+-+.|..++..+|++.++ -|++..+|... ...|||.|.+.+.|...+..++..
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~~~-~g~afV~f~~~~~A~~A~~~l~g~ 65 (90)
T 2dnq_A 8 MVKLFIGNLPREATEQEIRSLFE----QYGKVLECDII-KNYGFVHIEDKTAAEDAIRNLHHY 65 (90)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHH----TSSCEEEEEEE-TTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHH----hCCCEEEEEEE-CCEEEEEECCHHHHHHHHHHhcCC
Confidence 45677789999999888776554 34443466555 778999999999999888766543
No 57
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.59 E-value=4 Score=33.95 Aligned_cols=60 Identities=13% Similarity=0.224 Sum_probs=43.8
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-----ceEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-----SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-----t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....|||-+.|..++..+|++.++ -|++..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 78 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFS----PFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGR 78 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTT----TTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----hcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCC
Confidence 456678889999999888776544 3444346666644 36999999999999888876654
No 58
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=79.38 E-value=4.1 Score=32.99 Aligned_cols=60 Identities=15% Similarity=0.267 Sum_probs=43.6
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-----ceEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-----SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-----t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....|||-+.|..++..+|++.+++ |++..+|....+ ..+||.|.+.+.|...+..++..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~----~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~ 71 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNE----CGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGM 71 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHT----TSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh----cCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 3567888899999998888776553 444345555543 36999999999999888776554
No 59
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=79.14 E-value=5.6 Score=32.39 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=44.3
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC------ceEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....||+-+.|..++..+|++.++ -|++..+|...-+ ..|||.|.+.+.|...+..++..
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 80 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFL----QAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGI 80 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHG----GGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHH----hcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCC
Confidence 456788889999999888776554 3444346666544 36999999999999888776654
No 60
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.13 E-value=3.4 Score=34.13 Aligned_cols=59 Identities=10% Similarity=0.262 Sum_probs=43.7
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccce-EEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAF-NVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~-~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
..-+|+-+.|..++..+|++.+++ |++.. +|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~----~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 75 (99)
T 2div_A 9 AASLWMGDLEPYMDENFISRAFAT----MGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGK 75 (99)
T ss_dssp SSEEEECSCCTTCCHHHHHHHHHH----TTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTS
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHH----hCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCC
Confidence 466788889999998888876654 45444 6666644 26999999999999887766543
No 61
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.98 E-value=5.1 Score=33.30 Aligned_cols=60 Identities=8% Similarity=0.176 Sum_probs=44.9
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-----ceEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-----SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-----t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....|||-+.|..++..+|++.++ -|++..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 78 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFS----QIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGR 78 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHH----HHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHH----hcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 457788899999999888877555 3444346666653 47999999999999888877654
No 62
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=78.79 E-value=10 Score=31.85 Aligned_cols=58 Identities=9% Similarity=0.174 Sum_probs=43.5
Q ss_pred CCEEEEeccccc-cchhHHHHhhhhhhhccccceEEEEecCceEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRER-ISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~-~~~~~i~~~l~~~~~~F~~~~~V~~id~t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
..-+||-+.|.. ++..+|++.++ -|++..+|.. ....|||.|.+.+.|...+..++..
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~----~~G~v~~v~i-~~g~afV~f~~~~~A~~A~~~l~g~ 85 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFS----KYGRVAGCSV-HKGYAFVQYSNERHARAAVLGENGR 85 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHG----GGSCCSEEEE-ETTEEEEECSSSHHHHHHHHHHTTC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHH----hCCCeEEEEE-eCCEEEEEECCHHHHHHHHHHcCCC
Confidence 467888889998 89888776554 3444335544 6778999999999999888777654
No 63
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=78.28 E-value=3.4 Score=36.54 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=45.2
Q ss_pred CCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 006991 484 VSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 484 ~~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
+.....|||-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~----~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~ 111 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFS----KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM 111 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHT----TTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 33456778889999999888776554 3444346766633 26999999999999888876553
No 64
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.14 E-value=5 Score=33.19 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=43.4
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC------ceEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....|||-+.|..++..+|++.++ -|++..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 81 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICK----AHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGM 81 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHT----TTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----hCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCC
Confidence 356688889999999888776554 3444345665543 36999999999999888766553
No 65
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=77.92 E-value=4.5 Score=34.48 Aligned_cols=60 Identities=13% Similarity=0.212 Sum_probs=43.8
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc-------eEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....|||-+.|..++..+|++.++ -|++..+|..+-+. .|||.|.+.+.|...+..++..
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 90 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFM----PFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGF 90 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHG----GGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCC
Confidence 345778889999999888776555 34443466665443 6999999999999888776553
No 66
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=77.88 E-value=4.9 Score=34.35 Aligned_cols=60 Identities=13% Similarity=0.239 Sum_probs=43.2
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhh
Q 006991 485 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNS 548 (622)
Q Consensus 485 ~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~ 548 (622)
.....|||-+.|..++..+|++.++ -||+..+|..+-+ ..+||.|.+.+.+...+..++.
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 104 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFL----PFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNG 104 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTT----TSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH----hcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCC
Confidence 3456788899999999888776544 3444346666533 2699999999999988776644
No 67
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=77.85 E-value=5.4 Score=32.96 Aligned_cols=60 Identities=10% Similarity=0.193 Sum_probs=44.0
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEec-CceEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD-RSCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id-~t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....+||-+.|..++..+|++.+++ |++..+|...- ...|||.|.+.+.|...+..++..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~----~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~ 74 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEK----YGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNM 74 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTST----TCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhh----cCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 4567888899999998887765543 44434565554 457999999999999888777654
No 68
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.65 E-value=5.9 Score=33.64 Aligned_cols=58 Identities=12% Similarity=0.139 Sum_probs=42.3
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-ceEEEEecCCCchhHHHHHhhh
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-SCAIVVFGKPGLSNTFKNVMNS 548 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-t~a~V~~~~~~~~~~~l~~~~~ 548 (622)
..++|+-+.|..++-.+|++.+ .-||...+|..+.+ ..|||.|.+.+.|...+..++.
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F----~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~ 73 (101)
T 2cq1_A 15 SRVLHIRKLPGEVTETEVIALG----LPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 73 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHTT----TTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHH----HhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhcc
Confidence 4688888999988888876533 34444346655544 5799999999999988776653
No 69
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=77.58 E-value=2.8 Score=45.92 Aligned_cols=96 Identities=8% Similarity=-0.010 Sum_probs=54.0
Q ss_pred HHHHHHHhCCCCEEech-hHHHHHHHHHhcc----CCCCCCHHHHHHHHHccCCCccchhhHHhhhCcc-----------
Q 006991 316 EVIDLISASQKPLVAHN-SLNDFTFIHSKFL----APLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPV----------- 379 (622)
Q Consensus 316 ~Vi~~L~~skKpIVGHN-~llDL~~iy~~F~----gpLP~t~~EFk~~i~~lFP~I~DTKyLa~~~~~~----------- 379 (622)
.+.+.+.+.+.++|||| .=+|+-++-..|. .|+|..+. . .-..+||--++....++
T Consensus 87 ~f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~-------~-~~~~iDtl~l~r~~~~~~~~~~~wP~~~ 158 (482)
T 2qxf_A 87 RIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ-------H-DNSRWDLLDVMRACYALRPEGINWPEND 158 (482)
T ss_dssp HHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTG-------G-GCEEEEHHHHHHHHHHHCCTTSCCCBCT
T ss_pred HHHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccc-------c-CCceeeHHHHHHHHHHhCcccccCcccc
Confidence 34444443578999999 7899988766553 23331110 0 01256876555433211
Q ss_pred --cccCchHHHHHHHHhcCCCCceeecCCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 006991 380 --KKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSI 433 (622)
Q Consensus 380 --~~~~~L~~~~~~l~~~~~~~p~ve~~~~~~~~~~h~AGyDA~mTg~vF~~l~~~ 433 (622)
.+..+|..+...+. ++ ....|.|-.||+.|+.+|.+|...
T Consensus 159 ~~~~s~kL~~L~~~~G--------i~------~~~aHrAL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 159 DGLPSFRLEHLTKANG--------IE------HSNAHDAMADVYATIAMAKLVKTR 200 (482)
T ss_dssp TSSBCCCHHHHHHHTT--------CC------CC---CTTHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHcC--------CC------CCCCCCHHHHHHHHHHHHHHHHHh
Confidence 12335666655441 11 124699999999999999988753
No 70
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.41 E-value=4.3 Score=34.45 Aligned_cols=64 Identities=16% Similarity=0.221 Sum_probs=46.5
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc---eEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS---CAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t---~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....|||-+.|..++..+|++.+++++.+-.....+.+.... .|||.|.+.+.|...+..++..
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 90 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGY 90 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 356888899999999999887766555442222456665433 6999999999999888776554
No 71
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.32 E-value=5.5 Score=33.69 Aligned_cols=60 Identities=12% Similarity=0.169 Sum_probs=43.6
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC------ceEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....|||-+.|..++..+|++.++ -|++..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~----~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 79 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFS----MAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQ 79 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHT----TTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 356788889999999888776554 3444345665543 36999999999999888777654
No 72
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=77.13 E-value=6.7 Score=31.40 Aligned_cols=55 Identities=15% Similarity=0.204 Sum_probs=40.3
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHH
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKN 544 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~ 544 (622)
...-||+-+.|..++..+|++.++ -||+-..|.++-+ ..+||.|.+.+.|...+.
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 71 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFT----KFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD 71 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHT----TTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----hCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH
Confidence 456788899999999888776554 3444346666533 269999999998887664
No 73
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=76.88 E-value=7.6 Score=32.96 Aligned_cols=60 Identities=8% Similarity=0.208 Sum_probs=43.7
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....+||-+.|..++..+|++.++ -||+-.+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 25 ~~~~l~V~nLp~~~te~~l~~~F~----~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~ 91 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITEDMLRGIFE----PFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF 91 (108)
T ss_dssp SCEEEEEECCCSSCCHHHHHHHHT----TTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 356788889999999888876554 3444346666533 26999999999999888766553
No 74
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=76.86 E-value=4.6 Score=33.71 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=43.8
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC--------ceEEEEecCCCchhHHHHHh
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR--------SCAIVVFGKPGLSNTFKNVM 546 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~--------t~a~V~~~~~~~~~~~l~~~ 546 (622)
....|||-+.|..++..+|++.++ -||+...|..+-+ ..|||.|.+.+.|...+..+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 78 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFS----TFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 78 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHH----TTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHH----ccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHh
Confidence 456788889999999888776554 3454346766655 37999999999999888877
No 75
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=76.41 E-value=5.1 Score=32.99 Aligned_cols=60 Identities=13% Similarity=0.130 Sum_probs=43.7
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-ceEEEEecCCCchhHHHHHhhhcc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-SCAIVVFGKPGLSNTFKNVMNSKA 550 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-t~a~V~~~~~~~~~~~l~~~~~~~ 550 (622)
...|||-+.|..++..+|++.++ -|++..+|....+ ..|||.|.+.+.|...+..++...
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~----~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 77 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFD----RFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFP 77 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHH----TTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH----hcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCE
Confidence 45677789999999888776554 3444346665543 479999999999998888776543
No 76
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.39 E-value=4.7 Score=32.98 Aligned_cols=61 Identities=8% Similarity=0.078 Sum_probs=43.0
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEE--EecCce--EEEEecCCCchhHHHHHhhhc
Q 006991 485 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVR--MVDRSC--AIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 485 ~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~--~id~t~--a~V~~~~~~~~~~~l~~~~~~ 549 (622)
.....||+-+.|..++..+|++.++ -||+..+|. ..|... +||.|.+.+.|...+..++..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~----~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~ 77 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLV----QYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGF 77 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHH----HHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHH----hcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 3456788899999999888776554 344434563 333333 999999999999888766654
No 77
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=76.01 E-value=5.3 Score=32.02 Aligned_cols=57 Identities=11% Similarity=0.086 Sum_probs=40.6
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc-------eEEEEecCCCchhHHHHHhhh
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMNS 548 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~~ 548 (622)
...+|+-+.|..++..+|++.++ -||+-.+|..+-+. .|||.|.+.+.|...+ .++.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g 69 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFH----GCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDE 69 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHG----GGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH----hCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCC
Confidence 35678889999998888776554 34443466666442 6999999998888766 4443
No 78
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.95 E-value=5.2 Score=31.90 Aligned_cols=59 Identities=10% Similarity=0.240 Sum_probs=42.3
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
...+|+-+.|..++..+|++.++ -||+..+|..+-+ ..+||.|.+.+.|...+..++..
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~----~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 70 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLVKLCQ----PYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS 70 (85)
T ss_dssp CCEEEEESCCTTCCHHHHHTTST----TTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCC
Confidence 45788889999998888665433 3444345655543 26999999999999888877654
No 79
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=75.81 E-value=5.5 Score=31.63 Aligned_cols=60 Identities=18% Similarity=0.295 Sum_probs=43.0
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEec-------CceEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD-------RSCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id-------~t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....+|+-+.|..++..+|++.+++ ||+-.+|..+- ...|||.|.+.+.|...+..++..
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~----~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 72 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIP----FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES 72 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGG----GSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhc----cCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCC
Confidence 4677888999999998887765543 44433555432 336999999999999888766554
No 80
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.70 E-value=6.8 Score=32.53 Aligned_cols=56 Identities=14% Similarity=0.161 Sum_probs=40.4
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc-------eEEEEecCCCchhHHHH
Q 006991 485 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS-------CAIVVFGKPGLSNTFKN 544 (622)
Q Consensus 485 ~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t-------~a~V~~~~~~~~~~~l~ 544 (622)
.....|||-+.|..++..+|++.++ -|++...|..+-+. .|||.|.+.+.|...+.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 75 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFS----TFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS 75 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHG----GGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHH----hcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH
Confidence 3456688889999999888776554 34443466665542 69999999988887665
No 81
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=75.50 E-value=2.6 Score=34.63 Aligned_cols=57 Identities=18% Similarity=0.252 Sum_probs=41.2
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc-----eEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS-----CAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t-----~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....+|+-+.|..++..+|++ +|++++.|..++.+ .|||.|.+.+.|...+..++..
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~-------~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 76 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKE-------VFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGA 76 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHH-------HHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHH-------HHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 456788889999998888665 44555555444222 5999999999999887766543
No 82
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=75.49 E-value=5.5 Score=32.96 Aligned_cols=60 Identities=7% Similarity=0.164 Sum_probs=44.1
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEe-cCceEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMV-DRSCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~i-d~t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....+|+-+.|..++..+|++.+++ ||.-.+|... +...|||.|.+.+.|...+..++..
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~----~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 86 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQN----FGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANF 86 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHT----TSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHh----CCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 3567888899999998888775553 4443466665 4557999999999999887766543
No 83
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=75.05 E-value=4.9 Score=34.27 Aligned_cols=59 Identities=15% Similarity=0.249 Sum_probs=45.2
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCceEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....+||-+.|..++..+|++.+++ ||+..+|..+ ...|||.|.+.+.|...+..++..
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~~~F~~----~G~i~~v~i~-kg~afV~f~~~~~A~~Ai~~l~g~ 88 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELNEIFGP----FGPMKEVKIL-NGFAFVEFEEAESAAKAIEEVHGK 88 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHHHHHTT----TSCCCEEEEE-TTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHh----cCCEEEEEEE-CCEEEEEECCHHHHHHHHHHcCCC
Confidence 4677888899999998887765553 4443466666 788999999999999888776654
No 84
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=75.03 E-value=7.3 Score=33.01 Aligned_cols=60 Identities=10% Similarity=0.186 Sum_probs=43.5
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC----ceEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR----SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~----t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
..+.+||-+.|..++..+|++.++ -||+-.+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~----~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 70 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFG----KYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGF 70 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHH----TTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCC
Confidence 356788899999999888776554 3444345655432 36999999999998887766554
No 85
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.83 E-value=4.5 Score=34.53 Aligned_cols=58 Identities=10% Similarity=0.143 Sum_probs=42.7
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc-------eEEEEecCCCchhHHHHHhh
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMN 547 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~ 547 (622)
....|||-+.|..++..+|++.++ -|++..+|..+-+. .|||.|.+.+.|...+..++
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~ 80 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFE----GFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN 80 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHH----TTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----hCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCC
Confidence 456788889999999888776554 34443477776552 79999999988887766544
No 86
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=74.67 E-value=4.6 Score=38.46 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=44.6
Q ss_pred CCCCEEechhHHHHHHHHHhccCCCCCCHHHHHHHHHccCC-Cccc--hhh-HHhhhCcccccCchHHHHHHHHhcCCCC
Q 006991 324 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP-QVID--VNY-LLKDIGPVKKMTNISATIAYLKNRFFAP 399 (622)
Q Consensus 324 skKpIVGHN~llDL~~iy~~F~gpLP~t~~EFk~~i~~lFP-~I~D--TKy-La~~~~~~~~~~~L~~~~~~l~~~~~~~ 399 (622)
.+.|+||||.=+|+-||-+.| | + +...|+ .++| |=. |+....| .+.+ .
T Consensus 103 ~~~~lvghn~~FD~~FL~~~~----~-------~-~~~~~~~~~iDvsTl~elar~~~P--------~~~~--------~ 154 (186)
T 3tr8_A 103 GKSPLCGNSVCQDRRFLSRYM----P-------R-LNQFFHYRHLDVTTLKILAQRWAP--------QIAA--------A 154 (186)
T ss_dssp TCSCEEESSTHHHHHHHHHHC----H-------H-HHHHSCSCEEEHHHHHHHHHHHCH--------HHHT--------T
T ss_pred CCcEEEEEcHHHhHHHHHHHH----H-------H-cCCCCCCcEEeHHHHHHHHHHHCc--------cccc--------c
Confidence 567999999999999999763 1 1 223344 5889 743 7766543 1110 0
Q ss_pred ceeecCCCCCCCCcccchhhHHHHHHHHHH
Q 006991 400 IEMEIPNQANENEGKIHGHNVVKICQLFGK 429 (622)
Q Consensus 400 p~ve~~~~~~~~~~h~AGyDA~mTg~vF~~ 429 (622)
+ .....|.|=-||.-|...+-.
T Consensus 155 --~------~~~~~HrAl~Da~ati~~l~~ 176 (186)
T 3tr8_A 155 --H------IKESQHLALQDIRDSIEELRY 176 (186)
T ss_dssp --S------CCCCCSCHHHHHHHHHHHHHH
T ss_pred --C------CCCCCcChHHHHHHHHHHHHH
Confidence 0 123478899999988776543
No 87
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=74.67 E-value=6.3 Score=32.53 Aligned_cols=63 Identities=14% Similarity=0.242 Sum_probs=44.8
Q ss_pred CCCcCCEEEEeccccccchhHHHHhhhhhhhccccceE--------EEEecC-------ceEEEEecCCCchhHHHHHhh
Q 006991 483 KVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFN--------VRMVDR-------SCAIVVFGKPGLSNTFKNVMN 547 (622)
Q Consensus 483 ~~~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~--------V~~id~-------t~a~V~~~~~~~~~~~l~~~~ 547 (622)
++.....+||-+.|..++..+|++.+++++.+ .. |..+-+ ..|||.|.+.+.|...+..++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i----~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGII----KTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCB----CEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCE----eeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 34457889989999999988887765543332 23 544433 269999999999998887765
Q ss_pred hc
Q 006991 548 SK 549 (622)
Q Consensus 548 ~~ 549 (622)
..
T Consensus 85 g~ 86 (99)
T 2la6_A 85 GK 86 (99)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 88
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=74.38 E-value=7.9 Score=33.14 Aligned_cols=59 Identities=20% Similarity=0.173 Sum_probs=44.2
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEe-cCceEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMV-DRSCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~i-d~t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
..++|+-+.|..++-.+|++.++ -||+..+|.-+ +...|||.|.+.+.|...+..++..
T Consensus 21 s~~l~V~NLp~~~te~~L~~lF~----~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~ 80 (100)
T 3r27_A 21 SPVVHIRGLIDGVVEADLVEALQ----EFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADN 80 (100)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHG----GGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHh----ccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCC
Confidence 46899899999988888765443 45554466655 4567999999999999888877654
No 89
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=74.17 E-value=4.8 Score=33.16 Aligned_cols=59 Identities=12% Similarity=0.123 Sum_probs=43.4
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
...|||-+.|..++..+|++.++ -|++..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 73 (99)
T 1whw_A 8 SGRLFVRNLSYTSSEEDLEKLFS----AYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQ 73 (99)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHH----TTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH----hcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCC
Confidence 56788889999999888776554 3444346666544 36999999999999888766553
No 90
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=74.17 E-value=6.6 Score=33.94 Aligned_cols=63 Identities=10% Similarity=0.033 Sum_probs=46.7
Q ss_pred CCCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC------ceEEEEecCCCchhHHHHHhhhc
Q 006991 483 KVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 483 ~~~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
.+.....|||-+.|..++..+|++.+++ ||+..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~----~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 99 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAE----FGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGV 99 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHT----TSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh----cCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCC
Confidence 3445678888999999998888876553 444346666643 37999999999999888766553
No 91
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=74.10 E-value=5.5 Score=31.79 Aligned_cols=59 Identities=12% Similarity=0.204 Sum_probs=42.4
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEe--------cCceEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMV--------DRSCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~i--------d~t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
..-+|+-+.|..++..+|++.+++ ||+-.+|..+ ....|||.|.+.+.|...+..++..
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~----~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 70 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFST----YGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGG 70 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHT----TSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh----CCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCC
Confidence 466888999999998887765543 4443345443 3346999999999999888766554
No 92
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.05 E-value=5.8 Score=34.26 Aligned_cols=58 Identities=17% Similarity=0.249 Sum_probs=43.6
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEec-CceEEEEecCCCchhHHHHHhhh
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD-RSCAIVVFGKPGLSNTFKNVMNS 548 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id-~t~a~V~~~~~~~~~~~l~~~~~ 548 (622)
...+||-+.|..++-.+|++.++ -||+..+|..+- ...|||.|.+.+.|...+..++.
T Consensus 16 ~~~LfV~nLp~~vte~dL~~lF~----~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~ 74 (105)
T 1sjq_A 16 SRVIHIRKLPIDVTEGEVISLGL----PFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 74 (105)
T ss_dssp CCEEEECSCCTTSCHHHHHHHHH----HHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH----hcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcc
Confidence 57788899999998888776443 455545666664 46799999999999988876643
No 93
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=73.79 E-value=5.6 Score=33.26 Aligned_cols=62 Identities=11% Similarity=0.058 Sum_probs=45.1
Q ss_pred CCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC------ceEEEEecCCCchhHHHHHhhhc
Q 006991 484 VSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 484 ~~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
......|||-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 93 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFA----EFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGV 93 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHH----TTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 34567788899999999888776554 3444346666533 26999999999998888766553
No 94
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=73.27 E-value=8 Score=32.07 Aligned_cols=59 Identities=8% Similarity=0.205 Sum_probs=42.6
Q ss_pred cCCEEEEecccc-ccchhHHHHhhhhhhhccccceEEEEecCceEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRE-RISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~-~~~~~~i~~~l~~~~~~F~~~~~V~~id~t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....+||-+.|. .++-.+|++.++ -||...+|.. ....|||.|.+.+.|...+..++..
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~----~~G~v~~v~i-~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFS----PYGHIMQINI-KNAFGFIQFDNPQSVRDAIEXESQE 80 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHG----GGSCEEEEEE-CSSEEEEEESSHHHHHHHHHHHTTS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHH----hcCCEEEEEE-eCCEEEEEECCHHHHHHHHHHcCCC
Confidence 456788889996 899888776554 3444234443 4778999999999999888766543
No 95
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=73.25 E-value=6.2 Score=33.19 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=44.1
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....|||-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 91 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFC----DYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA 91 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHG----GGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----hcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCC
Confidence 346788889999999888776554 3444346776543 47999999999999887766553
No 96
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=73.18 E-value=5.4 Score=39.34 Aligned_cols=63 Identities=17% Similarity=0.288 Sum_probs=48.2
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEec----CceEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD----RSCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id----~t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
...|||-+.|..++..+|++.|..++.-||...+|.... ...+||.|.+.+.|...+..++..
T Consensus 9 ~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 75 (282)
T 3pgw_A 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGF 75 (282)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCC
Confidence 567888899999999999987776666666544665543 236999999999999888777553
No 97
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=72.91 E-value=6.8 Score=34.46 Aligned_cols=60 Identities=10% Similarity=0.094 Sum_probs=43.8
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....|||-+.|..++..+|++.++. ||+..+|..+-+ ..|||.|.+.+.|...+.+++..
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~~~F~~----~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 107 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLRQLFER----YGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGF 107 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHH----HSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh----cCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 4567888899999998888776553 444346666532 25999999999999888776553
No 98
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=72.82 E-value=7.5 Score=35.01 Aligned_cols=60 Identities=5% Similarity=-0.013 Sum_probs=44.7
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....|||-+.|..++..+|++.++ -|++...|.++-+ ..|||.|.+.+.|...+..++..
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 104 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFS----KSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGT 104 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHG----GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 457888899999999888776554 3444346666543 26999999999999888877654
No 99
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.57 E-value=7.3 Score=34.35 Aligned_cols=58 Identities=17% Similarity=0.249 Sum_probs=43.6
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEec-CceEEEEecCCCchhHHHHHhhh
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD-RSCAIVVFGKPGLSNTFKNVMNS 548 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id-~t~a~V~~~~~~~~~~~l~~~~~ 548 (622)
..+|||-+.|..++-.+|++.++ -||...+|..+. ...|||.|.+.+.|...+..++.
T Consensus 31 s~~LfVgNLp~~vte~dL~~lF~----~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~ 89 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVISLGL----PFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 89 (119)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHT----TTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH----hcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhcc
Confidence 46789899999988888775443 455545677664 46799999999999988877654
No 100
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=72.48 E-value=5 Score=32.06 Aligned_cols=62 Identities=6% Similarity=0.122 Sum_probs=43.4
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccc-------cceEEEEec-CceEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFA-------EAFNVRMVD-RSCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~-------~~~~V~~id-~t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
..-+|+-+.|..++..+|++.+++++...+ +..+|.... ...|||.|.+.+.|...+ .++..
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCC
Confidence 456787889999999998887776532224 323555443 457999999999988776 55543
No 101
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=72.23 E-value=5.9 Score=34.24 Aligned_cols=60 Identities=12% Similarity=0.176 Sum_probs=44.2
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhcc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSKA 550 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~~ 550 (622)
...|||-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..++...
T Consensus 22 ~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 88 (126)
T 3ex7_B 22 GWILFVTGVHEEATEEDIHDKFA----EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQD 88 (126)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHH----TTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCe
Confidence 45788899999999888776554 3444346666533 379999999999998888776543
No 102
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=72.08 E-value=3.9 Score=44.84 Aligned_cols=49 Identities=22% Similarity=0.190 Sum_probs=35.3
Q ss_pred hcCCCeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhhcccceeEEeeeeecCCCceeeEeeEEeecCc
Q 006991 48 ISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPR 120 (622)
Q Consensus 48 I~~a~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~~~y~~~~fNF~lfp~ 120 (622)
+.+..||++|+|.||+.+. .-.|+|+|...++.++. -...+|+.++-|.
T Consensus 6 ~~~~~~vv~DlETTGl~p~-----------------------~d~IIEIgaV~vd~~g~-ii~~~f~~lVkP~ 54 (482)
T 2qxf_A 6 KQQSTFLFHDYETFGTHPA-----------------------LDRPAQFAAIRTDSEFN-VIGEPEVFYCKPA 54 (482)
T ss_dssp -CCCEEEEEEEEESSSCTT-----------------------TSCEEEEEEEEECTTSC-BCSCCEEEEBCCC
T ss_pred CCCCCEEEEEEECCCCCCC-----------------------CCeEEEEEEEEEECCCe-EEeeeeEEEECCC
Confidence 4567899999999999321 13699999998765443 2334599998885
No 103
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=71.55 E-value=7 Score=30.82 Aligned_cols=56 Identities=13% Similarity=0.212 Sum_probs=40.7
Q ss_pred EEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 006991 490 VFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 490 v~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
+|+-+.|..++..+|++.++ -||+-.+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 4 l~V~nlp~~~t~~~l~~~f~----~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~ 66 (83)
T 3md1_A 4 LFVGDLNVNVDDETLRNAFK----DFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ 66 (83)
T ss_dssp EEEECCCTTCCHHHHHHHHT----TSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred EEEeCCCCCCCHHHHHHHHH----hcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCC
Confidence 66788999999888876554 3444346666533 35999999999999888766554
No 104
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=71.54 E-value=4.1 Score=38.82 Aligned_cols=46 Identities=22% Similarity=0.222 Sum_probs=30.1
Q ss_pred cCCCeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhhcccceeEEeeeeecCCCceeeEeeEEeec
Q 006991 49 SSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLF 118 (622)
Q Consensus 49 ~~a~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~~~y~~~~fNF~lf 118 (622)
.+..||++|+|.||+.+. .=.|+|+|....+. +.......+.+++-
T Consensus 7 ~~~~~v~~D~ETTGL~p~-----------------------~d~IiEIgaV~~d~-~~~i~~~~~~~~i~ 52 (186)
T 3tr8_A 7 SDDNLIWLDLEMTGLDPE-----------------------RDRIIEIATIVTNS-HLDILAEGPAFAIH 52 (186)
T ss_dssp CTTCEEEEEEEESSSCTT-----------------------TCCEEEEEEEEECT-TCCEEEECCCEECC
T ss_pred CCCcEEEEEEECCCCCCC-----------------------CCceEEEEEEEEcC-CeEEeeeeEEEEEe
Confidence 456899999999999432 23599999884322 12333455666664
No 105
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.49 E-value=10 Score=31.10 Aligned_cols=58 Identities=16% Similarity=0.226 Sum_probs=42.6
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhh
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNS 548 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~ 548 (622)
....|||-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+. ++.
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~ 73 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFK----KFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHF 73 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHS----SSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCC
Confidence 457788889999999888776554 3444346776643 369999999999988776 543
No 106
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.35 E-value=9.4 Score=32.03 Aligned_cols=60 Identities=10% Similarity=0.165 Sum_probs=42.7
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-c---eEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-S---CAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-t---~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....|||-+.|..++..+|++.+++ |++..+|....+ . .|||.|.+.+.|...+..++..
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~----~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 84 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYK----YGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 84 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGG----GSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh----cCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCC
Confidence 4567888899999988887765543 444334444332 2 6999999999999888777654
No 107
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.01 E-value=5 Score=35.73 Aligned_cols=55 Identities=11% Similarity=0.073 Sum_probs=39.0
Q ss_pred CCEEEEeccccc-cchhHHHHhhhhhhhccccceEEEEe----cCceEEEEecC-CCchhHHHHHhhh
Q 006991 487 EDVVFLWGFRER-ISAGILKNMLQGSHEVFAEAFNVRMV----DRSCAIVVFGK-PGLSNTFKNVMNS 548 (622)
Q Consensus 487 ~~vv~i~~f~~~-~~~~~i~~~l~~~~~~F~~~~~V~~i----d~t~a~V~~~~-~~~~~~~l~~~~~ 548 (622)
--+|++-+-+.. .+..+|++ +|+++++|.|| |++.+||-|.+ .+.|..++.+++.
T Consensus 18 G~il~v~~l~~~~~sredLke-------~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~ 78 (121)
T 1owx_A 18 GCLLKFSGDLDDQTCREDLHI-------LFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANN 78 (121)
T ss_dssp CCEEEEEESCCSSCCHHHHHH-------HTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTT
T ss_pred CeEEEEecCCCCcCCHHHHHH-------HHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhc
Confidence 345565556666 77667554 66666677777 67789999999 5788888887644
No 108
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=70.91 E-value=11 Score=31.30 Aligned_cols=59 Identities=12% Similarity=0.180 Sum_probs=43.0
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
...|||-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 23 ~~~l~V~nlp~~~t~~~l~~~f~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 88 (106)
T 1p27_B 23 GWILFVTGVHEEATEEDIHDKFA----EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ 88 (106)
T ss_dssp BEEEEEECCCTTCCHHHHHHHHG----GGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHh----ccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCC
Confidence 45688899999999888776554 3444346666533 35999999999999888766554
No 109
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=70.90 E-value=5.5 Score=30.97 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=39.3
Q ss_pred EEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhh
Q 006991 490 VFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMN 547 (622)
Q Consensus 490 v~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~ 547 (622)
+|+-+.|..++..+|++.+++ ||+-.+|..+-+ ..|||.|.+.+.|...+..++
T Consensus 3 l~v~nlp~~~t~~~l~~~F~~----~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 3 MFIGGLSWQTTQEGLREYFGQ----FGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp EEEESCCSSCCSHHHHHHHTT----TSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred EEEeCCCCCCCHHHHHHHHHh----cCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC
Confidence 566788988888888776554 444345665543 279999999999998877555
No 110
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=70.89 E-value=2.8 Score=39.78 Aligned_cols=47 Identities=21% Similarity=0.186 Sum_probs=31.8
Q ss_pred cCCCeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhhcccceeEEeeeeecCCCc-eeeEeeEEeecCc
Q 006991 49 SSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASK-VIAYPYNFHLFPR 120 (622)
Q Consensus 49 ~~a~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~~~-y~~~~fNF~lfp~ 120 (622)
....||+||+|.||+.+. .-.|+|+|.... ++.. .....|+.++-|.
T Consensus 7 ~~~~~vviD~ETTGl~p~-----------------------~d~IieIgav~~--~~~~~~~~~~~~~~v~p~ 54 (194)
T 2gbz_A 7 GNDRLIWIDLEMTGLDTD-----------------------RDSIIEIATIVT--DAQLNVLAEGPELAIAHS 54 (194)
T ss_dssp -CCEEEEEEEEESCSCTT-----------------------TCCEEEEEEEEE--ETTCCEEEECCCEECCCC
T ss_pred CCCCEEEEEeECCCCCCC-----------------------CCccEEEEEEEE--cCCcceeccCceEEEeCC
Confidence 456899999999999421 125999997763 3432 3445688887764
No 111
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=70.75 E-value=3.3 Score=38.95 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=33.6
Q ss_pred CCeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhhcccceeEEeeeeecCCCceeeEeeEEeecCc
Q 006991 51 SDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPR 120 (622)
Q Consensus 51 a~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~~~y~~~~fNF~lfp~ 120 (622)
..||+||+|.||+.+. .+ | -..-.|+|+|...+. ++......|+.++-|.
T Consensus 9 ~~~vviD~ETTGl~~~--~~----------~------~~~~~Iieig~v~~~--~~~~~~~~f~~lv~P~ 58 (194)
T 2gui_A 9 TRQIVLDTETTGMNQI--GA----------H------YEGHKIIEIGAVEVV--NRRLTGNNFHVYLKPD 58 (194)
T ss_dssp CEEEEEEEEESCCCSS--SS----------T------TTTCCEEEEEEEEEE--TTEECSCCEEEECCCS
T ss_pred CCEEEEEeeCCCCCCc--cc----------C------CCCCEEEEEEEEEEE--CCeEeccEEEEEECcC
Confidence 5799999999999431 00 1 013469999998886 3333335688888875
No 112
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=70.71 E-value=4.8 Score=38.00 Aligned_cols=49 Identities=12% Similarity=0.226 Sum_probs=34.4
Q ss_pred CeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhhcccceeEEeeeeecCCCceeeEeeEEeecCc
Q 006991 52 DFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPR 120 (622)
Q Consensus 52 ~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~~~y~~~~fNF~lfp~ 120 (622)
.||+||+|.||+.+.. ....-.|+|+|...++..++. ....|+.++-|.
T Consensus 11 ~~vviD~ETTGl~~~~-------------------~~~~~~Iieigav~~~~~~g~-i~~~f~~lv~P~ 59 (204)
T 1w0h_A 11 YICIIDFEATCEEGNP-------------------PEFVHEIIEFPVVLLNTHTLE-IEDTFQQYVRPE 59 (204)
T ss_dssp EEEECCCEECCCTTCC-------------------TTSCCCEEEEEEEEEETTTCS-EEEEEEEEBCCS
T ss_pred EEEEEEEecCCcCCCC-------------------CCCCCcEEEEEEEEEECCCCE-EeeeeeeEECCC
Confidence 5899999999984310 012346999999988753333 246789998885
No 113
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.53 E-value=7.8 Score=32.62 Aligned_cols=60 Identities=12% Similarity=0.246 Sum_probs=45.0
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEec-CceEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD-RSCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id-~t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....|||-+.|..++..+|++.++ -||+..+|..+- ...|||.|.+.+.|...+..++..
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~----~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~ 84 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFS----PFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT 84 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHH----HHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCC
Confidence 456788899999999888877555 344434666654 567999999999999888776553
No 114
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=70.50 E-value=14 Score=33.10 Aligned_cols=63 Identities=13% Similarity=0.219 Sum_probs=45.0
Q ss_pred CCCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 006991 483 KVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 483 ~~~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
++.....+++-+.|..++..+|++.+++ ||+-.+|..+-+ ..+||.|.+.+.|...+..++..
T Consensus 90 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~----~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 159 (172)
T 2g4b_A 90 PLPGAHKLFIGGLPNYLNDDQVKELLTS----FGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGM 159 (172)
T ss_dssp CCTTTTCEEEECCCTTCCHHHHHHHHHT----TSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTC
T ss_pred CCCCCCEEEEEcCCCcCCHHHHHHHHHh----cCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCC
Confidence 3344677888999999998887765543 444345555544 25999999999999888876553
No 115
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=70.48 E-value=6.4 Score=33.91 Aligned_cols=59 Identities=19% Similarity=0.316 Sum_probs=44.3
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC------ceEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
..-|||-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~ 71 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLKAVFG----KHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGK 71 (116)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHH----TSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH----hcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 45788889999999888776554 4454447777665 37999999999999888766553
No 116
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.45 E-value=8.8 Score=32.49 Aligned_cols=61 Identities=13% Similarity=0.212 Sum_probs=44.3
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-----ceEEEEecCCCchhHHHHHhhhc
Q 006991 485 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-----SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 485 ~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-----t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
.....||+-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~----~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~ 92 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFG----QFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGT 92 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGG----GTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHH----hcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCC
Confidence 3456788889999999888776554 3444346666533 47999999999999888766553
No 117
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.22 E-value=12 Score=31.08 Aligned_cols=56 Identities=14% Similarity=0.232 Sum_probs=41.7
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHH
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNV 545 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~ 545 (622)
....|||-+.|..++..+|++.++ -|++..+|..+-+ ..|||.|.+.+.|...+..
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~----~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFS----QYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 77 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHH----TTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh
Confidence 356688788999999888876554 3454446666655 2699999999999987775
No 118
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=70.12 E-value=4.4 Score=36.10 Aligned_cols=61 Identities=13% Similarity=0.126 Sum_probs=44.0
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc-------eEEEEecCCCchhHHHHHhhhc
Q 006991 485 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 485 ~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
.....|||-+.|..++..+|++.++ -||+..+|..+-+. .|||.|.+.+.|...+..++..
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~----~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~ 112 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFE----KYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA 112 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHG----GGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH----hcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 3455688889999998888776555 34443477766543 6999999999888777665543
No 119
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.03 E-value=11 Score=30.91 Aligned_cols=62 Identities=13% Similarity=0.163 Sum_probs=44.0
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCceEEEEecCCCchhHHHHHhhhcc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKA 550 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t~a~V~~~~~~~~~~~l~~~~~~~ 550 (622)
....+||-+.|..++..+|++.+++++. +....|. +-...|||.|.+.+.|...+..++...
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~--g~v~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~ 75 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKP--GAVERVK-KIRDYAFVHFSNREDAVEAMKALNGKV 75 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTST--TCEEEEE-ECSSEEEEEESSHHHHHHHHHHHSSEE
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCC--cceEEEE-EeCCeEEEEeCCHHHHHHHHHHhCCCE
Confidence 4567888899999998888876654311 3323444 335689999999999998888776543
No 120
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=70.01 E-value=7.7 Score=32.23 Aligned_cols=58 Identities=10% Similarity=0.118 Sum_probs=41.5
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc-------eEEEEecCCCchhHHHHHhhh
Q 006991 485 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMNS 548 (622)
Q Consensus 485 ~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~~ 548 (622)
.....|||-+.|..++..+|++.+++ |+ ..+|..+-+. .|||.|.+.+.|...+ .++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~----~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g 77 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKD----LS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDG 77 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTT----SC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTT
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHh----CC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCC
Confidence 34677888899999998887765543 33 2466666442 6999999998888776 5544
No 121
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=69.92 E-value=1.9 Score=35.58 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=40.1
Q ss_pred CEEEEeccccccchhHHHHhhhhhhhccc-cceEEEEecC-------ceEEEEecCCCchhHHHHHh
Q 006991 488 DVVFLWGFRERISAGILKNMLQGSHEVFA-EAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVM 546 (622)
Q Consensus 488 ~vv~i~~f~~~~~~~~i~~~l~~~~~~F~-~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~ 546 (622)
|+|||-+.|..++-.+|++.+++ || +-.+|..+-+ ..|||.|.+.+.|...+.++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~----~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~ 64 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQS----HGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEAN 64 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHH----HTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHH----hCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhc
Confidence 68899999999999998876654 34 2235555432 24999999999888777654
No 122
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.84 E-value=5.1 Score=33.19 Aligned_cols=60 Identities=17% Similarity=0.267 Sum_probs=43.4
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....|||-+.|..++..+|++.+++ |++..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~----~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 77 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIP----FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES 77 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTT----TSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhc----cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 4567888899999998887765553 444345665433 36999999999999888776543
No 123
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=69.56 E-value=7 Score=32.29 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=42.1
Q ss_pred EEEeccccccchhHHHHhhhhhhhccccceEEEEec--CceEEEEecCCCchhHHHHHhhhcc
Q 006991 490 VFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD--RSCAIVVFGKPGLSNTFKNVMNSKA 550 (622)
Q Consensus 490 v~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id--~t~a~V~~~~~~~~~~~l~~~~~~~ 550 (622)
+|+-+.|..++..+|++.+++ ||+..+|..+. ...|||.|.+.+.|...+..++...
T Consensus 3 l~V~nLp~~~t~~~l~~~F~~----~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 61 (101)
T 2hvz_A 3 VYVGNLGTGAGKGELERAFSY----YGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKV 61 (101)
T ss_dssp EEEECCCSSCSHHHHHHHHHH----HCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSC
T ss_pred EEEeCCCCCCCHHHHHHHHHh----cCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCe
Confidence 667788888888888776553 44434676664 4679999999999998888776543
No 124
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=69.43 E-value=7.5 Score=32.55 Aligned_cols=57 Identities=9% Similarity=0.157 Sum_probs=40.8
Q ss_pred EEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc-------eEEEEecCCCchhHHHHHhhhc
Q 006991 489 VVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 489 vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
-+||-+.|..++-.+|++.++ -||+-.+|..+-+. .|||.|.+.+.|...+..++..
T Consensus 21 ~lfV~nLp~~~te~~L~~~F~----~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~ 84 (99)
T 4fxv_A 21 NLIVNYLPQNMTQDELRSLFS----SIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGL 84 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHHH----TTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEEeCCCCCCCHHHHHHHHH----hcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCC
Confidence 478888999999888776544 34443466655321 5999999999999887766543
No 125
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=69.08 E-value=9.5 Score=33.29 Aligned_cols=61 Identities=16% Similarity=0.270 Sum_probs=44.1
Q ss_pred CCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhh
Q 006991 484 VSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNS 548 (622)
Q Consensus 484 ~~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~ 548 (622)
......|||-+.|..++..+|++.++ -||+...|..+-+ ..|||.|.+.+.|...+..++.
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 127 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFI----PFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE 127 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHG----GGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHH----hcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 34567888899999999888776554 3444346665433 3599999999999888776654
No 126
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.89 E-value=9.8 Score=32.19 Aligned_cols=58 Identities=17% Similarity=0.205 Sum_probs=42.3
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
...|||-+.|..++..+|++.++ -||...+|..+-+ ..|||.|.+.+.|...+ .++..
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~ 89 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFS----AVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQ 89 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHT----TTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH----hCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCC
Confidence 45788899999999888776554 3444346666522 26999999999999887 66544
No 127
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=68.63 E-value=8.8 Score=32.15 Aligned_cols=57 Identities=21% Similarity=0.277 Sum_probs=42.7
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEec-------CceEEEEecCCCchhHHHHHhh
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD-------RSCAIVVFGKPGLSNTFKNVMN 547 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id-------~t~a~V~~~~~~~~~~~l~~~~ 547 (622)
...|||-+.|..++..+|++.++ -|++..+|..+- ...|||.|.+.+.|...+..++
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 15 GKTVFIRNLSFDSEEEALGEVLQ----QFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHH----TTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCCHHHHHHHHH----hcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhc
Confidence 45688889999999888776554 344434666652 2369999999999998888776
No 128
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=68.30 E-value=5.6 Score=38.56 Aligned_cols=47 Identities=15% Similarity=0.272 Sum_probs=33.3
Q ss_pred CeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhhcccceeEEeeeeecCCCceeeEeeEEeecCc
Q 006991 52 DFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPR 120 (622)
Q Consensus 52 ~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~~~y~~~~fNF~lfp~ 120 (622)
.||+||+|.||+.+. . ..-.|||+|...++..... ....|+.++-|.
T Consensus 32 ~~vviD~ETTGl~~~--~-------------------d~~~IieIgav~v~~~~~~-i~~~f~~lV~P~ 78 (224)
T 2xri_A 32 YFLVLDFEATCDKPQ--I-------------------HPQEIIEFPILKLNGRTME-IESTFHMYVQPV 78 (224)
T ss_dssp EEEEECCEECCCC-C--C-------------------SSCCEEEEEEEEEETTTCC-EEEEEEEECCCS
T ss_pred eEEEEEEEcCCCCCC--C-------------------CCcceEEEEEEEEecCCcE-EeeeeeeEECCC
Confidence 699999999998421 0 1136999999988754222 356799998885
No 129
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=68.07 E-value=7.3 Score=31.65 Aligned_cols=60 Identities=12% Similarity=0.091 Sum_probs=41.0
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccc--eEEEEecC-----ceEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEA--FNVRMVDR-----SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~--~~V~~id~-----t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....|||-+.|..++..+|++.+++ |++. ..+..-.+ ..|||.|.+.+.|...+..++..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~----~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 80 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYG----YQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR 80 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTT----SCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh----cCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCC
Confidence 3578888999999998888765543 3332 12222222 24999999999999888766554
No 130
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.08 E-value=12 Score=31.57 Aligned_cols=60 Identities=13% Similarity=0.229 Sum_probs=43.6
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC------ceEEEEecCCCchhHHHHHhhhcc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR------SCAIVVFGKPGLSNTFKNVMNSKA 550 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~------t~a~V~~~~~~~~~~~l~~~~~~~ 550 (622)
..-|||-+.|..++..+|++.++ -|+...+|..+-+ ..+||.|.+.+.|...+..++...
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 90 (114)
T 1x5o_A 25 PTNLYISNLPLSMDEQELENMLK----PFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKF 90 (114)
T ss_dssp TTEEEEESCCTTCCHHHHHHTTT----TTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH----hcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 45688889999999888776444 3444346666544 359999999999998888776543
No 131
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=66.92 E-value=8.9 Score=31.39 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=42.5
Q ss_pred CEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 006991 488 DVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 488 ~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
..|||-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 3 ~~l~V~nLp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 67 (96)
T 2x1f_A 3 RVVYLGSIPYDQTEEQILDLCS----NVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGY 67 (96)
T ss_dssp SEEEEESCCTTCCHHHHHHHHH----TTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCCHHHHHHHHH----hcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 4677788999998888776555 3444346666543 36999999999999888776553
No 132
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=66.30 E-value=5.4 Score=41.26 Aligned_cols=73 Identities=15% Similarity=0.215 Sum_probs=47.5
Q ss_pred CeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhhcccceeEEeeeeecCCC----------------ceeeEeeEE
Q 006991 52 DFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQAS----------------KVIAYPYNF 115 (622)
Q Consensus 52 ~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~~----------------~y~~~~fNF 115 (622)
.||+||+|.||+.+ .+=.|+|+|+..++.+.. .-....|+.
T Consensus 13 tfVv~DlETTGL~~-----------------------~~d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~ 69 (314)
T 3u3y_B 13 TLIFLDLEATGLPS-----------------------SRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSL 69 (314)
T ss_dssp EEEEEEEEESSCGG-----------------------GCCCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEE
T ss_pred CEEEEEEECCCCCC-----------------------CCCeEEEEEEEEEECCccccccccccccccccccceeeeeEEE
Confidence 59999999999942 123599999998875420 013567888
Q ss_pred eecCccccccCCCCCceeechhHHHHHHHcCCCcchhhhcccccCC
Q 006991 116 HLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLS 161 (622)
Q Consensus 116 ~lfp~~~~~~~~~d~~f~~q~sSl~FL~~~gFDFnk~~~~GI~YLs 161 (622)
++-|.. . +.+.+. .-||+.=..+...|+|-+.
T Consensus 70 lI~P~~---------~--I~~~a~---~IhGIT~e~l~~aG~P~f~ 101 (314)
T 3u3y_B 70 CIAPGK---------A--CSPGAS---EITGLSKAELEVQGRQRFD 101 (314)
T ss_dssp ECBCSS---------C--CCHHHH---HHHSCCHHHHHHTTCCBSC
T ss_pred EECCCC---------C--CCHHHH---HhcCCCHHHHHhCCCCCcH
Confidence 887741 2 233333 3477777777666766553
No 133
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.19 E-value=5.3 Score=32.55 Aligned_cols=58 Identities=7% Similarity=0.104 Sum_probs=43.0
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhcccc-ceEEEEecCceEEEEecCCCchhHHHHHhhh
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAE-AFNVRMVDRSCAIVVFGKPGLSNTFKNVMNS 548 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~-~~~V~~id~t~a~V~~~~~~~~~~~l~~~~~ 548 (622)
..-+|+-+.|..++..+|++.+++ |+. ...+.......|||.|.+.+.|...+..++.
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~F~~----~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 66 (93)
T 2cqh_A 8 MNKLYIGNLSPAVTADDLRQLFGD----RKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSG 66 (93)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHH----TTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHH----cCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccC
Confidence 345777889999998888876654 443 2233445677899999999999988887765
No 134
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=65.88 E-value=11 Score=33.35 Aligned_cols=58 Identities=10% Similarity=0.167 Sum_probs=43.3
Q ss_pred CEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 006991 488 DVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 488 ~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
..+|+-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 3 ~~l~v~nlp~~~~~~~l~~~f~----~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~ 67 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQEEFRSLFG----SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGL 67 (167)
T ss_dssp SEEEEESCCTTCCHHHHHHHHH----TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred ceEEEcCCCCCCCHHHHHHHHH----hcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCC
Confidence 5678889999999888776554 3444346666554 36999999999999888877553
No 135
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=65.73 E-value=12 Score=31.97 Aligned_cols=58 Identities=14% Similarity=0.124 Sum_probs=42.4
Q ss_pred CCEEEEecccc-ccchhHHHHhhhhhhhccccceEEEEecC-ceEEEEecCCCchhHHHHHhhh
Q 006991 487 EDVVFLWGFRE-RISAGILKNMLQGSHEVFAEAFNVRMVDR-SCAIVVFGKPGLSNTFKNVMNS 548 (622)
Q Consensus 487 ~~vv~i~~f~~-~~~~~~i~~~l~~~~~~F~~~~~V~~id~-t~a~V~~~~~~~~~~~l~~~~~ 548 (622)
...|||-+.|. .++-.+|++ ++.-||+..+|.-+-+ ..|||.|.+.+.|...+..++.
T Consensus 15 ~~~l~V~nLp~~~~te~dL~~----lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~ 74 (102)
T 1x4d_A 15 RRVVHIMDFQRGKNLRYQLLQ----LVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTT 74 (102)
T ss_dssp CCEEEEESCCCSSSHHHHHHT----TTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCcCCHHHHHH----HHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcC
Confidence 56888888998 888777664 3334554346665543 5699999999999988887764
No 136
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=65.58 E-value=10 Score=32.34 Aligned_cols=57 Identities=16% Similarity=0.257 Sum_probs=40.8
Q ss_pred EEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-----ceEEEEecCCCchhHHHHHhhhc
Q 006991 489 VVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-----SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 489 vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-----t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
-|||-+.|..++-.+|++.++ -||+-.+|..+-+ ..+||.|.+.+.|...+..++..
T Consensus 7 ~lfV~nLp~~~te~~L~~~F~----~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~ 68 (115)
T 4f25_A 7 NIFIKNLDKSIDNKALYDTFS----AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGM 68 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHG----GGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCCCHHHHHHHHh----ccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCC
Confidence 377789999999888776554 3444345555433 25999999999999888876554
No 137
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=65.38 E-value=13 Score=33.07 Aligned_cols=61 Identities=10% Similarity=0.191 Sum_probs=43.1
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 006991 485 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 485 ~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
.....+++-+.|..++..+|++.++ -||+-..|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~----~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 154 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFG----KYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNV 154 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHT----SSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhh----cCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCC
Confidence 3467788899999999888776544 3443234444433 26999999999999888877654
No 138
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.98 E-value=9.6 Score=31.67 Aligned_cols=58 Identities=12% Similarity=0.094 Sum_probs=41.0
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC--------ceEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR--------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~--------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....|||-+.|..++..+|++.++ -|+ ..+|..+-+ ..|||.|.+.+.|...+ .++..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~----~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~ 79 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFR----GLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE 79 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTT----TSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHH----HCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCC
Confidence 356788888999999888776554 334 235555532 26999999999998877 66543
No 139
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=64.72 E-value=15 Score=31.89 Aligned_cols=59 Identities=12% Similarity=0.095 Sum_probs=43.1
Q ss_pred cCCEEEEeccccc-cchhHHHHhhhhhhhccccceEEEEec-CceEEEEecCCCchhHHHHHhhh
Q 006991 486 CEDVVFLWGFRER-ISAGILKNMLQGSHEVFAEAFNVRMVD-RSCAIVVFGKPGLSNTFKNVMNS 548 (622)
Q Consensus 486 ~~~vv~i~~f~~~-~~~~~i~~~l~~~~~~F~~~~~V~~id-~t~a~V~~~~~~~~~~~l~~~~~ 548 (622)
...+|||-+.|.. ++-.+|++. +.-||+..+|..+. ...|||.|.+.+.|...+..++.
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~l----F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~ 84 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKL----AEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLK 84 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTT----TTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCccCCHHHHHHH----HHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhcc
Confidence 3678998899986 888886643 33455434666654 35699999999999988887754
No 140
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.72 E-value=6.9 Score=31.90 Aligned_cols=59 Identities=15% Similarity=0.300 Sum_probs=42.3
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEE-EEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNV-RMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V-~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
...|||-+.|..++..+|++.+++ |++..+| ..+-+ ..|||.|.+.+.|...+..++..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~----~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 71 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSA----FGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQ 71 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHT----TSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh----cCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCC
Confidence 467888899999998887765543 4443355 44443 37999999999999887766543
No 141
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=63.88 E-value=13 Score=30.36 Aligned_cols=63 Identities=10% Similarity=0.061 Sum_probs=41.5
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-----ceEEEEecCCCchhHHHHHhhhc
Q 006991 485 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-----SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 485 ~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-----t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
.....||+-+.|..++..+|++.+++++.+-. +.+..-.. ..|||.|.+.+.|...+..++..
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~--~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 80 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPG--SVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR 80 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTT--TCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccc--eEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 35677888999999998887765543322110 12222222 35999999999999888766543
No 142
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=63.85 E-value=12 Score=31.98 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=41.7
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-c------eEEEEecCCCchhHHHHHhhhcc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-S------CAIVVFGKPGLSNTFKNVMNSKA 550 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-t------~a~V~~~~~~~~~~~l~~~~~~~ 550 (622)
..-|||-+.|..++-.+|++.++ -||+-.+|..+-+ . .+||.|.+.+.|...+..++...
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~----~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~ 72 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCR----KYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTS 72 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHT----TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CcEEEEECCCCCCCHHHHHHHHH----hcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34677789999888888776443 3444345554422 2 49999999999998888776543
No 143
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.67 E-value=18 Score=29.60 Aligned_cols=61 Identities=11% Similarity=0.114 Sum_probs=42.8
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEe-cCceEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMV-DRSCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~i-d~t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....|||-+.|..++..+|++.+++++.+ . ..+.+= ....|||.|.+.+.|...+..++..
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v--~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 79 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSV--P-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGL 79 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCC--C-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCE--E-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCC
Confidence 45678888999999999988766654443 1 223221 1346999999999999888776654
No 144
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=63.40 E-value=11 Score=42.30 Aligned_cols=102 Identities=15% Similarity=0.099 Sum_probs=62.7
Q ss_pred HHHHHHhCCCCEEechhHHHHHHHHHhccCCCCCCHHHHHHHHHccCCC-ccchhhHHhhhCcccccCchHHHHHHHHhc
Q 006991 317 VIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQ-VIDVNYLLKDIGPVKKMTNISATIAYLKNR 395 (622)
Q Consensus 317 Vi~~L~~skKpIVGHN~llDL~~iy~~F~gpLP~t~~EFk~~i~~lFP~-I~DTKyLa~~~~~~~~~~~L~~~~~~l~~~ 395 (622)
+.+.|.+...+.||||.=.|+.++.+ +|- + ++. ++||..++.-+.|-....+|..+.+.+-..
T Consensus 82 L~~~L~d~~i~kV~hnak~D~~~L~~--~Gi-~-------------l~~~~~DT~laayLL~p~~~~~~L~~La~~~Lg~ 145 (605)
T 2kfn_A 82 LKPLLEDEKALKVGQNLKYDRGILAN--YGI-E-------------LRGIAFDTMLESYILNSVAGRHDMDSLAERWLKH 145 (605)
T ss_dssp HHHHHTCTTSCEEESSHHHHHHHHHT--TTC-C-------------CCCEEEEHHHHHHHHCTTSSCCSHHHHHHHHSCC
T ss_pred HHHHHcCCCCeEEEECcHHHHHHHHH--CCC-C-------------CCCccccHHHHHHHhCCCCCCCCHHHHHHHhcCC
Confidence 34445566789999999999999886 231 1 233 799998777777644445677766654111
Q ss_pred CCCCcee-ecCCCC----CCC------CcccchhhHHHHHHHHHHHHHHhcc
Q 006991 396 FFAPIEM-EIPNQA----NEN------EGKIHGHNVVKICQLFGKLCSILKI 436 (622)
Q Consensus 396 ~~~~p~v-e~~~~~----~~~------~~h~AGyDA~mTg~vF~~l~~~l~~ 436 (622)
. .+.. ++.+.+ ... ..|-|+.||..|..+|-+|...|..
T Consensus 146 ~--~i~~~~~~gKg~~~~~~~~~~le~~~~yAa~Da~~~~~L~~~L~~~L~~ 195 (605)
T 2kfn_A 146 K--TITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 195 (605)
T ss_dssp C--CCCHHHHHCSSTTCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred C--cccHHHHhCCCcccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 0000 001111 000 1144899999999999999887743
No 145
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=63.31 E-value=6.9 Score=31.77 Aligned_cols=56 Identities=9% Similarity=0.261 Sum_probs=39.2
Q ss_pred EEEeccccccchhHHHHhhhhhhhccc--cceEEEEecCc-------eEEEEecCCCchhHHHHHhhhc
Q 006991 490 VFLWGFRERISAGILKNMLQGSHEVFA--EAFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 490 v~i~~f~~~~~~~~i~~~l~~~~~~F~--~~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
+|+-+.|..++..+|++.++ -|| ...+|..+-+. .+||.|.+.+.|...+..++..
T Consensus 4 l~V~nL~~~~t~~~l~~~F~----~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~ 68 (90)
T 3p5t_L 4 LYIGNLTWWTTDEDLTEAVH----SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR 68 (90)
T ss_dssp CEEESCCTTCCHHHHHHHHH----TTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGS
T ss_pred EEEeCCCCCCCHHHHHHHHH----HhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCC
Confidence 56678888888888887655 445 33466655442 5999999999999888777654
No 146
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=62.86 E-value=14 Score=33.75 Aligned_cols=59 Identities=14% Similarity=0.176 Sum_probs=44.1
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
...|||-+.|..++..+|++.++ -||+...|.++-+ ..|||.|.+.+.|...+..++..
T Consensus 72 ~~~l~V~nLp~~~t~~~L~~~F~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 137 (165)
T 1rk8_A 72 GWILFVTSIHEEAQEDEIQEKFC----DYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA 137 (165)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHG----GGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhh----cCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCC
Confidence 45788889999999888776554 3444346776644 46999999999999888776554
No 147
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.50 E-value=14 Score=29.72 Aligned_cols=58 Identities=16% Similarity=0.131 Sum_probs=41.8
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-c-----eEEEEecCCCchhHHHHHhhh
Q 006991 485 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-S-----CAIVVFGKPGLSNTFKNVMNS 548 (622)
Q Consensus 485 ~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-t-----~a~V~~~~~~~~~~~l~~~~~ 548 (622)
.....+|+-+.|..++..+|++.++++ .-.+|..+-+ + .|||.|.+.+.|...+. ++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-----~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g 71 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-----KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNR 71 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-----CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCS
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-----CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCC
Confidence 456788889999999998988766542 2235555432 2 59999999999888777 544
No 148
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=62.26 E-value=13 Score=32.76 Aligned_cols=57 Identities=23% Similarity=0.311 Sum_probs=42.2
Q ss_pred EEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc------eEEEEecCCCchhHHHHHhhhc
Q 006991 489 VVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS------CAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 489 vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t------~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
.||+-+.|..++..+|++.++ -||+-.+|..+-+. .|||.|.+.+.|...+..++..
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~----~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~ 64 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQ----VGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGK 64 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHG----GGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEECCCCCcCCHHHHHHHHH----hcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCC
Confidence 477889999999888776554 34443466665332 5999999999999888777654
No 149
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=62.26 E-value=12 Score=33.47 Aligned_cols=60 Identities=13% Similarity=0.127 Sum_probs=44.6
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc-------eEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....+||-+.|..++-.+|++.++ -||+..+|..+-+. .+||.|.+.+.|...+..++..
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~----~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 135 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFE----KYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA 135 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHH----HHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 467888899999999888776554 34443466666542 6999999999999888776554
No 150
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=62.25 E-value=7.8 Score=33.07 Aligned_cols=59 Identities=15% Similarity=0.089 Sum_probs=42.6
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEe-cCceEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMV-DRSCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~i-d~t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
.+.+||-+.|..++..+|++.++ -||+...|... +...|||.|.+.+.|...+..++..
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~----~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~ 69 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFS----RFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYS 69 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHH----TTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH----hcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCC
Confidence 56788888999888888776544 34443355444 3456999999999999888877654
No 151
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.92 E-value=8.6 Score=32.17 Aligned_cols=57 Identities=12% Similarity=0.156 Sum_probs=42.0
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhcccc-ceEEEEe--------cCceEEEEecCCCchhHHHHHhh
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAE-AFNVRMV--------DRSCAIVVFGKPGLSNTFKNVMN 547 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~-~~~V~~i--------d~t~a~V~~~~~~~~~~~l~~~~ 547 (622)
..-|||-+.|..++..+|++.++ -|++ ..+|.++ ....|||.|.+.+.|...+..++
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~----~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 73 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIA----KVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLM 73 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHH----HHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTT
T ss_pred CCEEEEeCCCCcCCHHHHHHHHH----HhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhh
Confidence 45677788999999888887665 3444 3577776 12369999999999987777653
No 152
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=61.63 E-value=27 Score=31.86 Aligned_cols=61 Identities=13% Similarity=0.224 Sum_probs=44.8
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 006991 485 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 485 ~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
.....+++-+.|..++..+|++.++ -||+..+|..+-+ ..+||.|.+.+.|...+..++..
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~----~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 179 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLT----SFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGM 179 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHH----TBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH----HcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCC
Confidence 3467888899999999888776554 3444346665544 25999999999999888876554
No 153
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=60.60 E-value=14 Score=30.22 Aligned_cols=58 Identities=9% Similarity=0.212 Sum_probs=42.3
Q ss_pred CCEEEEecccc-ccchhHHHHhhhhhhhccccceEEEEecCceEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRE-RISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~-~~~~~~i~~~l~~~~~~F~~~~~V~~id~t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
...+||-+.|. .++..+|++.++ -||+..+|.. ....|||.|.+.+.|...+..++..
T Consensus 10 ~~~l~V~nlp~~~~t~~~l~~~F~----~~G~v~~v~i-~~g~afV~f~~~~~A~~A~~~l~g~ 68 (96)
T 2kvi_A 10 KSRLFIGNLPLKNVSKEDLFRIFS----PYGHIMQINI-KNAFGFIQFDNPQSVRDAIECESQE 68 (96)
T ss_dssp CEEEEEESSTTSCCCHHHHHHHHT----TTCCCCEEEE-ETTEEEEEESCHHHHHHHHHHHTCS
T ss_pred CCEEEEeCCCcccCCHHHHHHHHH----hcCCEEEEEE-eCCEEEEEECCHHHHHHHHHHcCCC
Confidence 55678788996 888888776544 3444335544 3778999999999999888876554
No 154
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=60.60 E-value=12 Score=34.97 Aligned_cols=62 Identities=10% Similarity=0.039 Sum_probs=45.7
Q ss_pred CCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC------ceEEEEecCCCchhHHHHHhhhc
Q 006991 484 VSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 484 ~~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
+.....|||-+.|..++..+|++.+++ ||+...|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~----~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~ 152 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAE----FGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGV 152 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHH----TSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh----cCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCC
Confidence 344678888999999999888876654 444346766643 35999999999998887766553
No 155
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=60.48 E-value=19 Score=32.02 Aligned_cols=60 Identities=12% Similarity=0.137 Sum_probs=44.4
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC--ceEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR--SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~--t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....+|+-+.|..++-.+|++.++ -||+..+|..+-+ ..+||.|.+.+.|...+..++..
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~----~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~ 133 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFG----YYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGR 133 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHH----HHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----hhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCC
Confidence 456788888999998888776554 3444346666644 57999999999999888776554
No 156
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=60.40 E-value=17 Score=31.98 Aligned_cols=62 Identities=10% Similarity=0.214 Sum_probs=43.2
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhcc
Q 006991 485 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSKA 550 (622)
Q Consensus 485 ~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~~ 550 (622)
.....+++-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..++...
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~----~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 154 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFS----QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 154 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHG----GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHH----hcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCc
Confidence 3456788899999999888776554 3444334544422 359999999999998888776543
No 157
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.34 E-value=10 Score=31.29 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=42.3
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
...+||-+.|..++..+|++.+++ ||+-..|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~----~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 73 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSE----VGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 73 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHT----TSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSB
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHh----cCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 456777899999998888776553 444345555432 36999999999999887766543
No 158
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.19 E-value=15 Score=31.02 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=39.7
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC------ceEEEEecCCCchhHHHH
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR------SCAIVVFGKPGLSNTFKN 544 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~------t~a~V~~~~~~~~~~~l~ 544 (622)
..-||+-+.|..++..+|++.++ -||+-.+|..+-+ ..+||.|.+.+.|...+.
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~----~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~ 70 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLE----DKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE 70 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHH----TSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT
T ss_pred CCEEEEECCCCCCCHHHHHHHHh----hcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH
Confidence 45688889999999888776554 4555456766643 469999999988886655
No 159
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=60.00 E-value=12 Score=30.50 Aligned_cols=59 Identities=10% Similarity=0.159 Sum_probs=41.6
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEec----------CceEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD----------RSCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id----------~t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
...|||-+.|..++..+|++.+++ |++...|..+- ...|||.|.+.+.|...+..++..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~----~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~ 73 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSK----VGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGH 73 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHT----TSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh----cCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 456777899999998888776553 44433444442 136999999999998887766554
No 160
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=59.72 E-value=13 Score=35.52 Aligned_cols=60 Identities=13% Similarity=0.225 Sum_probs=45.2
Q ss_pred cCCEEEEecccc-ccchhHHHHhhhhhhhccccceEEEEecC--ceEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRE-RISAGILKNMLQGSHEVFAEAFNVRMVDR--SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~-~~~~~~i~~~l~~~~~~F~~~~~V~~id~--t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....|||-+.|. .++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~----~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~ 95 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFG----VYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGH 95 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHH----HHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHH----hCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 456888899998 899888776554 4454346766644 45999999999999888877654
No 161
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=59.47 E-value=26 Score=29.22 Aligned_cols=61 Identities=7% Similarity=0.064 Sum_probs=40.3
Q ss_pred cCCEEEEecccccc------chhHHHHhhhhhhhccccceEEEEecC-----ceEEEEecCCCchhHHHHHhhhcc
Q 006991 486 CEDVVFLWGFRERI------SAGILKNMLQGSHEVFAEAFNVRMVDR-----SCAIVVFGKPGLSNTFKNVMNSKA 550 (622)
Q Consensus 486 ~~~vv~i~~f~~~~------~~~~i~~~l~~~~~~F~~~~~V~~id~-----t~a~V~~~~~~~~~~~l~~~~~~~ 550 (622)
..+.||+-+.|..+ +..+|++ ++.-||+-.+|....+ ..|||.|.+.+.|...+..++...
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~----~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~ 85 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHK----IFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYK 85 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHH----HHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHH----HHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcc
Confidence 35678888898766 3344443 3334554346655532 369999999999998888766543
No 162
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=59.45 E-value=12 Score=38.08 Aligned_cols=50 Identities=12% Similarity=0.224 Sum_probs=35.3
Q ss_pred CCeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhhcccceeEEeeeeecCCCceeeEeeEEeecCc
Q 006991 51 SDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPR 120 (622)
Q Consensus 51 a~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~~~y~~~~fNF~lfp~ 120 (622)
-.||+||+|.||+.... ....-.|||+|...++..... ....|+.++-|.
T Consensus 78 ~~~vviD~ETTGl~~~~-------------------~~~~~~IIeIgaV~v~~~~g~-i~~~f~~lV~P~ 127 (299)
T 1zbh_A 78 DYICIIDFEATCEEGNP-------------------PEFVHEIIEFPVVLLNTHTLE-IEDTFQQYVRPE 127 (299)
T ss_dssp SEEEEECCEECCCTTCC-------------------TTCCCCEEEEEEEEEETTTCC-EEEEEEEEBCCS
T ss_pred ceEEEEEeecccCCCCC-------------------CCCCCceEEEEEEEEECCCCe-EeeeeeeeecCC
Confidence 46899999999994210 113446999999998754322 356789998885
No 163
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.30 E-value=14 Score=31.07 Aligned_cols=64 Identities=11% Similarity=0.175 Sum_probs=43.0
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccc----eEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEA----FNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~----~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....|||-+.|..++..+|++.+++++.+-+.. -.|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 456788889999999888877655433321100 02444433 26999999999999888877654
No 164
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.16 E-value=16 Score=29.73 Aligned_cols=57 Identities=23% Similarity=0.370 Sum_probs=40.2
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-c--eEEEEecCCCchhHHHHHhhh
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-S--CAIVVFGKPGLSNTFKNVMNS 548 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-t--~a~V~~~~~~~~~~~l~~~~~ 548 (622)
...-||+-+.|..++..+|++.++ -||+..+| ..|. + .+||.|.+.+.|...+. ++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~----~~G~v~~v-~~~~~~g~~afV~f~~~~~a~~ai~-l~g 66 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFL----AFGPVASV-VMDKDKGVFAIVEMGDVGAREAVLS-QSQ 66 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGG----GTSCEEEE-EECSSSCCEEEEEESSHHHHHHHHT-CSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHH----hcCCeEEE-EEcCCCCcEEEEEECCHHHHHHHHh-cCC
Confidence 345788889999999888776544 34443466 5554 3 79999999988887766 543
No 165
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=58.95 E-value=5.6 Score=37.44 Aligned_cols=43 Identities=12% Similarity=0.256 Sum_probs=27.9
Q ss_pred CCCeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhhcccceeEEeeeeecCCCceeeEeeEEeecCc
Q 006991 50 SSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPR 120 (622)
Q Consensus 50 ~a~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~~~y~~~~fNF~lfp~ 120 (622)
...||+||+|+||+.+. ..-.|+|+|+. ..++... |+.++-|.
T Consensus 4 ~~~~vviD~ETTGl~~~----------------------~~~~iiei~~v--~~~g~~i----~~~lV~P~ 46 (189)
T 1wlj_A 4 SREVVAMDCEMVGLGPH----------------------RESGLARCSLV--NVHGAVL----YDKFIRPE 46 (189)
T ss_dssp --CEEEEEEEEEEETTT----------------------TEEEEEEEEEE--CTTCCEE----EEEEEECS
T ss_pred CCeEEEEEeECcCcCCC----------------------CCceEEEEEEE--eCCCCEE----EeeEecCC
Confidence 45899999999999421 02347899985 3344321 77888775
No 166
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=58.52 E-value=17 Score=30.46 Aligned_cols=57 Identities=14% Similarity=0.108 Sum_probs=40.2
Q ss_pred CCCCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEe-cCc-----eEEEEecCCCchhHHH
Q 006991 482 RKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMV-DRS-----CAIVVFGKPGLSNTFK 543 (622)
Q Consensus 482 ~~~~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~i-d~t-----~a~V~~~~~~~~~~~l 543 (622)
..+.....||+-+.|..++..||++.+++ |+. ++|..+ |.+ .|||.|.+.+.|+..+
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~----~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al 72 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSP----LNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAM 72 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCS----CCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHH----cCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHH
Confidence 34456778998999999888887764443 332 355554 333 5999999999888776
No 167
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=58.14 E-value=12 Score=30.02 Aligned_cols=56 Identities=11% Similarity=0.252 Sum_probs=38.5
Q ss_pred EEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 006991 489 VVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 489 vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
-+|+-+.|..++..+|++.++ -||+-.+|..+-+ ..|||.|.+.+ |...+..++..
T Consensus 3 ~l~V~nLp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~ 65 (90)
T 2ki2_A 3 NIYVGNLVYSATSEQVKELFS----QFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNT 65 (90)
T ss_dssp EEEEEEECTTSSHHHHTTTHH----HHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSS
T ss_pred EEEECCCCCCCCHHHHHHHHH----hcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCC
Confidence 366778898888888766544 3444346666533 26999999999 88777765543
No 168
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=57.97 E-value=12 Score=32.12 Aligned_cols=57 Identities=11% Similarity=0.109 Sum_probs=41.2
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhh
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNS 548 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~ 548 (622)
...|||-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+ .++.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g 99 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFS----SCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDE 99 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHH----TTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH----hcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCC
Confidence 46788899999999888876555 3444346666543 26999999999888776 4443
No 169
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=57.95 E-value=8.1 Score=32.07 Aligned_cols=59 Identities=14% Similarity=0.104 Sum_probs=40.7
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc--------eEEEEecCCCchhHHHHHhhhc
Q 006991 485 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS--------CAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 485 ~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t--------~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....-+|+-+.|..++..+|++.++ -|| ..+|..+-+. .|||.|.+.+.|...+ .++..
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~----~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~ 83 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFR----GLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE 83 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSC----SSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH----hcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCC
Confidence 3567788888999998888776544 344 3466665442 6999999999988877 55543
No 170
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=57.93 E-value=21 Score=31.34 Aligned_cols=60 Identities=12% Similarity=0.143 Sum_probs=42.6
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....+++-+.|..++..+|++.++ -||.-.+|..+-+ ..+||.|.+.+.|...+..++..
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~----~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 152 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFK----DFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ 152 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHT----TSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCceEEECCCCCCCCHHHHHHHHh----ccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Confidence 355788889999999888776554 3444345555432 25999999999999888766553
No 171
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=57.68 E-value=16 Score=35.85 Aligned_cols=73 Identities=15% Similarity=0.229 Sum_probs=45.5
Q ss_pred CeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhhcccceeEEeeeeecCC--C--------------ceeeEeeEE
Q 006991 52 DFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQA--S--------------KVIAYPYNF 115 (622)
Q Consensus 52 ~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~--~--------------~y~~~~fNF 115 (622)
+||+||+|.||+.+ .+=.|+|+|+..++... . .-....|+.
T Consensus 13 ~~vv~D~ETTGl~~-----------------------~~d~IiEIgav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 69 (242)
T 3mxm_B 13 TLIFLDLEATGLPS-----------------------SRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSL 69 (242)
T ss_dssp EEEEEEEEESSCGG-----------------------GCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEE
T ss_pred eEEEEEeecCCCCC-----------------------CCCeeEEEEEEEecCCcccccccccccccccccccchhheeEE
Confidence 59999999999942 12469999998886542 0 024567888
Q ss_pred eecCccccccCCCCCceeechhHHHHHHHcCCCcchhhhcccccCC
Q 006991 116 HLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLS 161 (622)
Q Consensus 116 ~lfp~~~~~~~~~d~~f~~q~sSl~FL~~~gFDFnk~~~~GI~YLs 161 (622)
++-|.. . +.+.+. .-||+.=..+...|+|-+.
T Consensus 70 li~P~~---------~--i~~~~~---~i~GIt~~~l~~~g~p~~~ 101 (242)
T 3mxm_B 70 CIAPGK---------A--CSPGAS---EITGLSKAELEVQGRQRFD 101 (242)
T ss_dssp ECCCSS---------C--CCHHHH---HHHCCCHHHHHHTTCCCSC
T ss_pred EECCCC---------C--CCHHHH---HhcCCCHHHHHhcCCCchh
Confidence 887742 1 223332 3566666555555554433
No 172
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=57.66 E-value=14 Score=33.35 Aligned_cols=58 Identities=17% Similarity=0.246 Sum_probs=43.5
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-----ceEEEEecCCCchhHHHHHhhhc
Q 006991 485 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-----SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 485 ~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-----t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
.....+++-+.|..++..+|++ +|++++.|..++. ..+||.|.+.+.|...+..++..
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~-------~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 159 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKE-------VFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGA 159 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHH-------HCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEE
T ss_pred ccCCEEEEeCCCCCCCHHHHHH-------HHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCC
Confidence 3467788889999888877664 5566667777633 35999999999999888876553
No 173
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=57.64 E-value=22 Score=31.56 Aligned_cols=61 Identities=16% Similarity=0.321 Sum_probs=44.0
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC------ceEEEEecCCCchhHHHHHhhhcc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR------SCAIVVFGKPGLSNTFKNVMNSKA 550 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~------t~a~V~~~~~~~~~~~l~~~~~~~ 550 (622)
....+++-+.|..++..+|++.++ -||+-.+|..+-+ ..+||.|.+.+.|...+.+++...
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~----~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFS----SFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQ 160 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHG----GGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSC
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHH----hCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCc
Confidence 456788889999999888776554 3444335555543 149999999999998888776543
No 174
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=57.09 E-value=24 Score=28.93 Aligned_cols=54 Identities=13% Similarity=0.258 Sum_probs=39.5
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC------ceEEEEecCCCchhHHHH
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR------SCAIVVFGKPGLSNTFKN 544 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~------t~a~V~~~~~~~~~~~l~ 544 (622)
..-+|+-+.|..++..+|++.++ -||+-.+|..+-+ ..|||.|.+.+.|...+.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFA----RYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHG----GGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH----hCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh
Confidence 45688889999999888776554 3444346665543 469999999999986655
No 175
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=56.38 E-value=13 Score=29.40 Aligned_cols=58 Identities=7% Similarity=0.060 Sum_probs=37.0
Q ss_pred CEEEEecccccc------chhHHHHhhhhhhhccccceEEEEecC-----ceEEEEecCCCchhHHHHHhhhc
Q 006991 488 DVVFLWGFRERI------SAGILKNMLQGSHEVFAEAFNVRMVDR-----SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 488 ~vv~i~~f~~~~------~~~~i~~~l~~~~~~F~~~~~V~~id~-----t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
+.+|+-+.|..+ +..+|++ ++.-||+-.+|....+ ..|||.|.+.+.|...+..++..
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~----~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~ 70 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHK----IFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGY 70 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHH----HHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHH----HHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCc
Confidence 457777888766 2344443 3334554346665542 46999999999888777765543
No 176
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=56.12 E-value=11 Score=38.66 Aligned_cols=49 Identities=20% Similarity=0.460 Sum_probs=33.8
Q ss_pred CeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhhcccceeEEeeeeecCCCce-eeEeeEEeecCc
Q 006991 52 DFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKV-IAYPYNFHLFPR 120 (622)
Q Consensus 52 ~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~~~y-~~~~fNF~lfp~ 120 (622)
.||+||+|.||+.+. . | | ...|||+|...++..++.- ....|+.++-|.
T Consensus 20 ~~vviD~ETTGl~~~--~-----d-----~--------~~eIIEIgaV~vd~~~g~i~~~~~f~~lV~P~ 69 (308)
T 3cg7_A 20 TLLILDFETTSDAAN--Q-----D-----Y--------PCEVIQFAIVAYDVPNDKIREDISFNKYVKPV 69 (308)
T ss_dssp EEEEEEEEECCBTTB--C-----S-----C--------CCCEEEEEEEEEETTTTEEEEEEEEEEECBCS
T ss_pred eEEEEEeecCCCCCC--C-----C-----C--------CCCeEEEEEEEEEcCCCEEeeccceeeEECCC
Confidence 589999999999421 0 1 1 2469999999987533332 223789888885
No 177
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=54.17 E-value=14 Score=31.32 Aligned_cols=57 Identities=12% Similarity=0.116 Sum_probs=40.2
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHh
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVM 546 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~ 546 (622)
...-|||-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..+
T Consensus 24 ~~~~lfV~nLp~~~te~~L~~~F~----~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~ 87 (109)
T 2rs2_A 24 SGCKMFIGGLSWQTTQEGLREYFG----QFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 87 (109)
T ss_dssp --CCEEEESCCTTCCHHHHHHHHT----TTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----ccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC
Confidence 345677789999999888776554 3444346766644 26999999998888776643
No 178
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=54.17 E-value=13 Score=32.01 Aligned_cols=61 Identities=11% Similarity=-0.001 Sum_probs=42.3
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccc-cceEEEEec---CceEEEEecCCCchhHHHHHhhhc
Q 006991 485 SCEDVVFLWGFRERISAGILKNMLQGSHEVFA-EAFNVRMVD---RSCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 485 ~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~-~~~~V~~id---~t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....-|||-+.|..++..+|++.+++ || ....|.... ...+||.|.+.+.|+..+..++..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~----~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~ 90 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARE----NSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNI 90 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHH----HTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHH----hCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCC
Confidence 34667888899998888888876554 34 222343331 345999999999999887766553
No 179
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=53.77 E-value=22 Score=34.80 Aligned_cols=60 Identities=18% Similarity=0.259 Sum_probs=45.4
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc--eEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS--CAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t--~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
..+.+||-+.|..++..+|++.++ -||...+|..+.+. .+||.|.+.+.|...+.+++..
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~----~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 267 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFN----QFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGF 267 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHH----hcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCc
Confidence 356788899999988888776544 45554577777665 6999999999999888876553
No 180
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=53.72 E-value=9.7 Score=29.38 Aligned_cols=51 Identities=12% Similarity=0.287 Sum_probs=36.1
Q ss_pred EEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHH
Q 006991 490 VFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKN 544 (622)
Q Consensus 490 v~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~ 544 (622)
+|+-+.|..++..+|++.+++ ||+-.+|.+.-+ ..|||.|.+.+.|...+.
T Consensus 2 l~v~nLp~~~t~~~l~~~F~~----~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~ 59 (75)
T 1iqt_A 2 IFVGGLSPDTPEEKIREYFGG----FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 59 (75)
T ss_dssp EEESCCCSSCCHHHHHHHHHH----HSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT
T ss_pred EEEeCCCCCCCHHHHHHHHHh----cCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH
Confidence 466778888888888876654 444346665432 369999999988887655
No 181
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=53.69 E-value=14 Score=32.98 Aligned_cols=61 Identities=8% Similarity=0.156 Sum_probs=44.8
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccc-------cceEEEEe-cCceEEEEecCCCchhHHHHHhhh
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFA-------EAFNVRMV-DRSCAIVVFGKPGLSNTFKNVMNS 548 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~-------~~~~V~~i-d~t~a~V~~~~~~~~~~~l~~~~~ 548 (622)
..-||+-+.|..++..+|++.+++++.+.+ +..++.-. +...|||.|.+.+.|...+ .++.
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~ 72 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDG 72 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTT
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCC
Confidence 346777889999999999998887765555 32344333 4557999999999998777 5544
No 182
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=52.48 E-value=15 Score=32.49 Aligned_cols=59 Identities=14% Similarity=0.122 Sum_probs=42.9
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
...|++-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~ 68 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFR----AIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGI 68 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHH----TTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHH----hcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCC
Confidence 35678889999999888777554 3444345655533 26999999999999888876553
No 183
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=52.44 E-value=20 Score=32.23 Aligned_cols=63 Identities=16% Similarity=0.067 Sum_probs=47.2
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccce-EEE-EecCceEEEEecCCCchhHHHHHhhh
Q 006991 485 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAF-NVR-MVDRSCAIVVFGKPGLSNTFKNVMNS 548 (622)
Q Consensus 485 ~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~-~V~-~id~t~a~V~~~~~~~~~~~l~~~~~ 548 (622)
.....|||-+.|..++..+|++.+++++.+.+..+ +.. -.....|||.|.+.+.|...+ +++.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g 75 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTG 75 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGG
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCC
Confidence 34677888899999999999999998888777222 222 223457999999999999888 4554
No 184
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=51.85 E-value=22 Score=31.11 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=40.2
Q ss_pred CEEEE--eccccccchhHHHHhhhhhhhccccceEEEEe-cCceEEEEecCCCchhHHHHHhhhcc
Q 006991 488 DVVFL--WGFRERISAGILKNMLQGSHEVFAEAFNVRMV-DRSCAIVVFGKPGLSNTFKNVMNSKA 550 (622)
Q Consensus 488 ~vv~i--~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~i-d~t~a~V~~~~~~~~~~~l~~~~~~~ 550 (622)
..+|+ -+.+..++-.+|++.++ -||.-.+|... +...+||.|.+.+.|...+.+++...
T Consensus 26 ~~L~V~Ng~L~~~~te~~L~~~F~----~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~ 87 (114)
T 2cq2_A 26 QSLVVANGGLGNGVSRNQLLPVLE----KCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKE 87 (114)
T ss_dssp SEEEEETCTGGGTCCHHHHHHHHH----HHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCE
T ss_pred CEEEEECCCCCCCCCHHHHHHHHH----hcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 45777 55787778777765444 34432344433 34569999999999998888887653
No 185
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=51.58 E-value=22 Score=32.96 Aligned_cols=58 Identities=16% Similarity=0.200 Sum_probs=42.7
Q ss_pred CEEEEeccccccchhHHHHhhhhhhhccccceEEEEec-------CceEEEEecCCCchhHHHHHhhhc
Q 006991 488 DVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD-------RSCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 488 ~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id-------~t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
..|||-+.|..++..+|++.++ -||+..+|..+- ...|||.|.+.+.|...+..++..
T Consensus 29 ~~l~V~nLp~~~t~~~l~~~f~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~ 93 (216)
T 2qfj_A 29 SRVYVGSIYYELGEDTIRQAFA----PFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSV 93 (216)
T ss_dssp TEEEEECCCTTCCHHHHHHHHG----GGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSC
T ss_pred CEEEEECCCCCCCHHHHHHHHH----hCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCC
Confidence 4688899999999888776554 344434666653 346999999999999888866543
No 186
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=51.23 E-value=22 Score=32.41 Aligned_cols=59 Identities=12% Similarity=0.229 Sum_probs=43.6
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccc--cceEEEEecCc-------eEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFA--EAFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~--~~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
..-|||-+.|..++-.+|++.++ -|| ...+|..+-|. .+||.|.+.+.|...+..++..
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~----~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~ 122 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIR----SIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGK 122 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHH----HTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH----HHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 46788899999998888887655 455 43577776441 5999999999998887766543
No 187
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=51.18 E-value=17 Score=30.22 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=42.0
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhcccc--ceEEEEecCc-------eEEEEecCCCchhHHHHHhhh
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAE--AFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMNS 548 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~--~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~~ 548 (622)
=+-+||=+.|..++..+|++.++ -||+ ..+|+.+-|. .+||.|.+.+.|...+.+++.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~----~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng 75 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALS----PYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQS 75 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHST----TTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHS
T ss_pred cCEEEEeCCCCcCCHHHHHHHHH----hhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcC
Confidence 35577788999888888776544 3443 1367665431 599999999999999988865
No 188
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=50.99 E-value=12 Score=28.95 Aligned_cols=51 Identities=12% Similarity=0.235 Sum_probs=35.7
Q ss_pred EEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHH
Q 006991 490 VFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKN 544 (622)
Q Consensus 490 v~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~ 544 (622)
+|+-+.|..++..+|++.+++ ||+-.+|...-+ ..|||.|.+.+.|...+.
T Consensus 2 l~v~nlp~~~t~~~l~~~F~~----~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFEQ----FGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHHT----TSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS
T ss_pred EEEecCCCCCCHHHHHHHHHh----cCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 456788888888888776553 444346665543 269999999988876554
No 189
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=50.60 E-value=25 Score=32.01 Aligned_cols=57 Identities=9% Similarity=0.132 Sum_probs=41.4
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHH
Q 006991 485 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNV 545 (622)
Q Consensus 485 ~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~ 545 (622)
.....|||-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 74 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFE----QWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHG----GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH----hCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc
Confidence 3456788889999999888776554 4444346666543 2699999999888877764
No 190
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=50.48 E-value=25 Score=34.15 Aligned_cols=59 Identities=8% Similarity=0.229 Sum_probs=42.8
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccc--cceEEEEecCc-------eEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFA--EAFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~--~~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
..-|||-+.|..++-.+|++.++ -|+ ...+|..+-+. .+||.|.+.+.|...+..++..
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~----~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~ 135 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVH----SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR 135 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHH----TTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTS
T ss_pred ccEEEEeCCCCCCCHHHHHHHHH----HHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 44678889999998888887655 455 43567666542 5999999999998877766543
No 191
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=49.76 E-value=19 Score=32.89 Aligned_cols=60 Identities=8% Similarity=0.159 Sum_probs=43.8
Q ss_pred CEEEEeccccccchhHHHHhhhhhhhccc-------cceEEEEe-cCceEEEEecCCCchhHHHHHhhh
Q 006991 488 DVVFLWGFRERISAGILKNMLQGSHEVFA-------EAFNVRMV-DRSCAIVVFGKPGLSNTFKNVMNS 548 (622)
Q Consensus 488 ~vv~i~~f~~~~~~~~i~~~l~~~~~~F~-------~~~~V~~i-d~t~a~V~~~~~~~~~~~l~~~~~ 548 (622)
.-||+-+.|..++..+|++.+++++.+.+ +..++..- +...|||.|.+.+.|...+ .++.
T Consensus 5 ~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g 72 (198)
T 2yh0_A 5 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDG 72 (198)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTT
T ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcC
Confidence 45777899999999999988887765555 32344432 3457999999999999877 5544
No 192
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.74 E-value=30 Score=29.67 Aligned_cols=56 Identities=9% Similarity=0.032 Sum_probs=37.4
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceE-EEEec-Cc-----eEEEEecCCCchhHHHH
Q 006991 485 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFN-VRMVD-RS-----CAIVVFGKPGLSNTFKN 544 (622)
Q Consensus 485 ~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~-V~~id-~t-----~a~V~~~~~~~~~~~l~ 544 (622)
.....|||-+.|..++..+|++.++. |+...+ +...+ .+ .|||.|.+.+.|...+.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~----~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~ 85 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKK----LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC 85 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCS----SCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh----cCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH
Confidence 34578888899999988887764443 333212 22332 22 59999999988887666
No 193
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.61 E-value=21 Score=30.14 Aligned_cols=56 Identities=11% Similarity=0.138 Sum_probs=41.0
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHH
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNV 545 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~ 545 (622)
....|||-+.|..++..+|++.++ -|++..+|..+-+ ..|||.|.+.+.|...+..
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYE----QWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHT----SSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----hcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh
Confidence 446788899999999888776554 4454446766654 2799999999888866654
No 194
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.22 E-value=15 Score=31.14 Aligned_cols=58 Identities=14% Similarity=0.063 Sum_probs=39.3
Q ss_pred CCCcCCEEEEeccccccchhHHHHhhhhhhhccccc-eEEEEec------CceEEEEecCCCchhHHHH
Q 006991 483 KVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEA-FNVRMVD------RSCAIVVFGKPGLSNTFKN 544 (622)
Q Consensus 483 ~~~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~-~~V~~id------~t~a~V~~~~~~~~~~~l~ 544 (622)
.+.....|||-+.|..++..+|++.+++ |+.. ..|..+- ...|||.|.+.+.|...+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~----~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~ 75 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEG----IPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSER 75 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTT----SCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGG
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHh----CCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHH
Confidence 3445677898999999998887765443 3332 2355542 2359999999988876544
No 195
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=48.26 E-value=22 Score=31.63 Aligned_cols=58 Identities=12% Similarity=0.269 Sum_probs=42.1
Q ss_pred CEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC---------ceEEEEecCCCchhHHHHHhhhc
Q 006991 488 DVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR---------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 488 ~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~---------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
.-||+-+.|..++-.+|++.++ -||+-.+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 4 ~~l~V~nLp~~~te~~l~~~F~----~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~ 70 (175)
T 3nmr_A 4 IKMFVGQVPRTWSEKDLRELFE----QYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNM 70 (175)
T ss_dssp EEEEEESCCTTCCHHHHHHHHH----TTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTT
T ss_pred eEEEEeCCCCCCCHHHHHHHHH----hCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCc
Confidence 3577789999999888776554 3454345555422 35999999999999888877653
No 196
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=47.94 E-value=37 Score=27.68 Aligned_cols=62 Identities=15% Similarity=0.040 Sum_probs=43.2
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccce-EE-EEecCceEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAF-NV-RMVDRSCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~-~V-~~id~t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
..-|||-+.|..++..+|++.+++++.+-+... +. .--....|||.|.+.+.|...+. ++..
T Consensus 17 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~ 80 (101)
T 1fj7_A 17 PFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGL 80 (101)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCc
Confidence 457888889999999999988877666544111 11 01123469999999999998886 6554
No 197
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=47.62 E-value=28 Score=33.95 Aligned_cols=61 Identities=15% Similarity=0.229 Sum_probs=44.9
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEe-cCceEEEEecCCCchhHHHHHhhhc
Q 006991 485 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMV-DRSCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 485 ~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~i-d~t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
.....|||-+.|..++-.+|++.++ -||+..+|... +...|||.|.+.+.|...+..++..
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~----~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~ 81 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFE----RYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGT 81 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTG----GGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHH----hcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCc
Confidence 3456788889999999888776554 34443466655 4556999999999999888877553
No 198
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=47.53 E-value=30 Score=32.01 Aligned_cols=59 Identities=12% Similarity=0.200 Sum_probs=42.5
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
.+.+|+-+.|..++..+|++.++ -||...+|..+-+ ..+||.|.+.+.|...+..++..
T Consensus 125 ~~~l~v~nlp~~~t~~~l~~~f~----~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~ 190 (216)
T 2qfj_A 125 FNRIYVASVHQDLSDDDIKSVFE----AFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLF 190 (216)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHT----TSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CcEEEEeCCCCcCCHHHHHHHHh----ccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCC
Confidence 46788889999998888776544 3444345655543 26999999999999888877553
No 199
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=46.70 E-value=14 Score=30.63 Aligned_cols=60 Identities=12% Similarity=0.164 Sum_probs=39.9
Q ss_pred CCEEEEecccc------ccchhHHHHhhhhhhhccccceEEEEe-cC------ceEEEEecCCCchhHHHHHhhhcc
Q 006991 487 EDVVFLWGFRE------RISAGILKNMLQGSHEVFAEAFNVRMV-DR------SCAIVVFGKPGLSNTFKNVMNSKA 550 (622)
Q Consensus 487 ~~vv~i~~f~~------~~~~~~i~~~l~~~~~~F~~~~~V~~i-d~------t~a~V~~~~~~~~~~~l~~~~~~~ 550 (622)
++.|||-+.|. .++..+|++.+ .-||+-.+|..+ |. ..+||.|.+++.|...+..++...
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F----~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~ 78 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLF----SKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKR 78 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHH----HTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCB
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHH----HhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcc
Confidence 56788888888 66655655433 344443355544 22 259999999999998888776543
No 200
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=45.65 E-value=21 Score=38.30 Aligned_cols=59 Identities=12% Similarity=0.147 Sum_probs=43.2
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
...|||-+.|..++..+|++.++ -||+...|..+-+ ..|||.|.+.+.|...+.+++..
T Consensus 102 ~~~lfV~nL~~~~te~~L~~~F~----~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 167 (437)
T 3pgw_S 102 FKTLFVARVNYDTTESKLRREFE----VYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK 167 (437)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH----HcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC
Confidence 45788899999998888776554 3554446655533 36999999999999888877653
No 201
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.49 E-value=34 Score=28.41 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=37.9
Q ss_pred CCcCCEEEEeccccccchhHHHHhhhhhhhccccceE-EEEe-cC-----ceEEEEecCCCchhHHHHH
Q 006991 484 VSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFN-VRMV-DR-----SCAIVVFGKPGLSNTFKNV 545 (622)
Q Consensus 484 ~~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~-V~~i-d~-----t~a~V~~~~~~~~~~~l~~ 545 (622)
......||+-+.|..++..+|++.+++ |+...+ |..+ |. ..|||.|.+.+.|...+..
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~----~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~ 76 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSG----LEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK 76 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTT----CCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh----cCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh
Confidence 345678898899999888887654332 222123 4333 22 2599999999888866553
No 202
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=45.26 E-value=30 Score=31.75 Aligned_cols=59 Identities=14% Similarity=0.132 Sum_probs=44.1
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccc-cceEEEEe--cCceEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFA-EAFNVRMV--DRSCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~-~~~~V~~i--d~t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
.+.+++-+.|..++..+|++.+++ || .-.+|..+ +...+||.|.+.+.|...+..++..
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~----~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~ 181 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSS----NGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNH 181 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHH----TTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSS
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHH----cCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCC
Confidence 577888899999988888776653 45 33356654 4456999999999999888877654
No 203
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=45.15 E-value=32 Score=32.78 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=44.2
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccc-cceEEEEe--cCceEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFA-EAFNVRMV--DRSCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~-~~~~V~~i--d~t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
...+++-+.|..++..+|++.++ -|| .-.+|..+ +...+||.|.+.+.|...+..++..
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~----~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 212 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFS----SNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNH 212 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHH----TTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCccCCHHHHHHHHH----HcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCC
Confidence 57788889999998888776554 445 33466664 5567999999999999888877654
No 204
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=45.07 E-value=52 Score=28.78 Aligned_cols=64 Identities=11% Similarity=0.177 Sum_probs=43.1
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhcccc---c-eEEEEec----CceEEEEecCCCchhHHHHHhhhcc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAE---A-FNVRMVD----RSCAIVVFGKPGLSNTFKNVMNSKA 550 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~---~-~~V~~id----~t~a~V~~~~~~~~~~~l~~~~~~~ 550 (622)
...|||-+.|..++..+|++.+++++.+-.- . .+|.... ...|||.|.+.+.|...+..++...
T Consensus 45 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~ 116 (143)
T 3egn_A 45 NCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYV 116 (143)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCE
Confidence 4678889999999998888766544433211 0 1343332 2269999999999998888776543
No 205
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=44.69 E-value=15 Score=38.48 Aligned_cols=50 Identities=12% Similarity=0.204 Sum_probs=35.0
Q ss_pred CCeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhhcccceeEEeeeeecCCCceeeEeeEEeecCc
Q 006991 51 SDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPR 120 (622)
Q Consensus 51 a~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~~~y~~~~fNF~lfp~ 120 (622)
-.||+||+|.||+.... ....-.|||+|+..++.... -....|+.++-|.
T Consensus 128 ~~~vviD~ETTGl~~~~-------------------~~~~deIIEIgaV~vd~~~g-~i~~~f~~lVkP~ 177 (349)
T 1zbu_A 128 DYICIIDFEATCEEGNP-------------------PEFVHEIIEFPVVLLNTHTL-EIEDTFQQYVRPE 177 (349)
T ss_dssp SEEEECCCEECCCTTCC-------------------TTCCCCEEECCEEEEETTTT-EEEEEECCBEECS
T ss_pred CeEEEEEEecCCCCCcC-------------------CCCCCeEEEEEEEEEECCCc-eEeEEEEEEECCC
Confidence 47899999999993210 12345699999999875322 2456788888885
No 206
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.82 E-value=16 Score=31.09 Aligned_cols=55 Identities=15% Similarity=0.254 Sum_probs=39.3
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC----------ceEEEEecCCCchhHHHHHh
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR----------SCAIVVFGKPGLSNTFKNVM 546 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~----------t~a~V~~~~~~~~~~~l~~~ 546 (622)
..-||+-+.|..++..+|++.++ -||+ +.+.++-+ ..|||.|.+.+.|...+.++
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~----~~G~-i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFR----RFGP-LVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTT----TTCC-CCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCEEEEcCCCCCCCHHHHHHHHH----hcCC-EEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 45577788999999888776544 3343 23555532 36999999999999888776
No 207
>1whr_A Hypothetical KIAA1002 protein; R3H domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=43.70 E-value=31 Score=30.70 Aligned_cols=44 Identities=9% Similarity=0.165 Sum_probs=30.1
Q ss_pred cHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHhcCcccCCCCCccccccchHHHHHHHHHHHhc
Q 006991 194 DTVFIERVRSRVKHWKNACTDSDIKTEAALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDF 263 (622)
Q Consensus 194 d~~fi~~v~~~I~eWl~~~~~~~~~~~~~l~~~l~~~~~~~e~~~~~p~l~l~~~~~~q~~Lv~q~l~~~ 263 (622)
|+.|+.++-..|.+|+++.. .+.+.++++|+|||.|+|++...+
T Consensus 29 dR~~il~lE~~i~~Fi~d~~--------------------------~~~~ef~pmnSy~RllvHrvAe~y 72 (124)
T 1whr_A 29 DRMMLLKLEQEILEFINDNN--------------------------NQFKKFPQMTSYHRMLLHRVAAYF 72 (124)
T ss_dssp THHHHHHHHHHHHHHHHCSS--------------------------CCEEECCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCC--------------------------ccceECCCCCHHHHHHHHHHHHHh
Confidence 56666666667766666422 123667788999999999975543
No 208
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.55 E-value=45 Score=28.08 Aligned_cols=67 Identities=16% Similarity=0.259 Sum_probs=39.0
Q ss_pred CCCcCCEEEEecc--ccccc-----hhHHHHhhhhhhhccccceEEEEecC---ceEEEEecCCCchhHHHHHhhhc
Q 006991 483 KVSCEDVVFLWGF--RERIS-----AGILKNMLQGSHEVFAEAFNVRMVDR---SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 483 ~~~~~~vv~i~~f--~~~~~-----~~~i~~~l~~~~~~F~~~~~V~~id~---t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
.+....++++-.. |.++. ..++++.|..++.-||+-.+|...|. ..+||.|.+.+.|...+..++..
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 3344566665553 22221 12345555554444554346644444 46999999999999887766553
No 209
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=43.39 E-value=26 Score=33.31 Aligned_cols=60 Identities=7% Similarity=0.103 Sum_probs=44.2
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccc--eEEEEecC-----ceEEEEecCCCchhHHHHHhhhcc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEA--FNVRMVDR-----SCAIVVFGKPGLSNTFKNVMNSKA 550 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~--~~V~~id~-----t~a~V~~~~~~~~~~~l~~~~~~~ 550 (622)
.+.+|+.+.|..++-.+|++.++ -||.. ..|.-+.+ ..+||.|.+.+.|...+..++...
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~----~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~ 189 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICD----ELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQ 189 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHH----HHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCE
T ss_pred cceEEEeCCCCCCCHHHHHHHHH----hcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCC
Confidence 35688899999988888776544 44543 35665554 369999999999998888886643
No 210
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=43.17 E-value=50 Score=29.07 Aligned_cols=61 Identities=15% Similarity=0.148 Sum_probs=37.3
Q ss_pred CCEE--EEeccccccchhHHHHhhhhhhhccccceEEEEecCc--eEEEEecCCCchhHHHHHhhhccc
Q 006991 487 EDVV--FLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS--CAIVVFGKPGLSNTFKNVMNSKAV 551 (622)
Q Consensus 487 ~~vv--~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t--~a~V~~~~~~~~~~~l~~~~~~~~ 551 (622)
.+++ +|-+-|..++..+|++ ++.-||...+|.-++.+ .|||.|.+.+.|...+.+++...+
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~----~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i 87 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYT----VCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADI 87 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHH----HHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CcEEEEEEcCcCCCCCHHHHHH----HHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4444 3445566666665443 22333332345444544 499999999999988888877653
No 211
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=42.77 E-value=12 Score=36.21 Aligned_cols=47 Identities=15% Similarity=0.243 Sum_probs=33.0
Q ss_pred CCeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhhcccceeEEeeeeecCC-----C--------ceeeEeeEEee
Q 006991 51 SDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQA-----S--------KVIAYPYNFHL 117 (622)
Q Consensus 51 a~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~-----~--------~y~~~~fNF~l 117 (622)
..||+||+|.||+.+ ..-.|+|+|+..++... . .-....|+.++
T Consensus 10 ~~~v~iD~ETTGl~~-----------------------~~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~lv 66 (238)
T 1y97_A 10 ETFVFLDLEATGLPS-----------------------VEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCM 66 (238)
T ss_dssp SEEEEEEEEESSCGG-----------------------GCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEEC
T ss_pred CeEEEEEeeCCCcCC-----------------------CCCcEEEEEEEEecccccccccccccccccccccceeeEEEE
Confidence 579999999999831 12359999999887541 0 01235788888
Q ss_pred cCc
Q 006991 118 FPR 120 (622)
Q Consensus 118 fp~ 120 (622)
-|.
T Consensus 67 ~P~ 69 (238)
T 1y97_A 67 CPE 69 (238)
T ss_dssp CCS
T ss_pred CCC
Confidence 775
No 212
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.53 E-value=59 Score=26.30 Aligned_cols=57 Identities=18% Similarity=0.427 Sum_probs=37.3
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEe-cCceEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMV-DRSCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~i-d~t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
...|||-++ .++..+|++.++ -||+..+|... ....|||.|.+.+.|...+..++..
T Consensus 15 ~~~l~V~n~--~~t~~~l~~~F~----~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~ 72 (97)
T 1x5p_A 15 GNTLYVYGE--DMTPTLLRGAFS----PFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGT 72 (97)
T ss_dssp CSEEEEECS--SCCHHHHHHHHT----TTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTE
T ss_pred CCEEEEcCC--CCCHHHHHHHHh----hCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 456776664 567677665443 34443355443 2457999999999999888776554
No 213
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=41.65 E-value=27 Score=32.15 Aligned_cols=60 Identities=13% Similarity=0.233 Sum_probs=44.1
Q ss_pred CCEEEEecccc-ccchhHHHHhhhhhhhccccceEEEEecC--ceEEEEecCCCchhHHHHHhhhcc
Q 006991 487 EDVVFLWGFRE-RISAGILKNMLQGSHEVFAEAFNVRMVDR--SCAIVVFGKPGLSNTFKNVMNSKA 550 (622)
Q Consensus 487 ~~vv~i~~f~~-~~~~~~i~~~l~~~~~~F~~~~~V~~id~--t~a~V~~~~~~~~~~~l~~~~~~~ 550 (622)
...||+-+.|. .++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..++...
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~----~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~ 65 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFG----VYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHK 65 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHH----TTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHH----hcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCe
Confidence 35788889998 899888776554 3444346666544 469999999999998888776543
No 214
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=41.47 E-value=22 Score=29.71 Aligned_cols=56 Identities=5% Similarity=-0.079 Sum_probs=39.4
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhcccc---ceEEEEecC------ceEEEEecCCCchhHHHH
Q 006991 485 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAE---AFNVRMVDR------SCAIVVFGKPGLSNTFKN 544 (622)
Q Consensus 485 ~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~---~~~V~~id~------t~a~V~~~~~~~~~~~l~ 544 (622)
.....||+-+.|..++..+|++.+++ |+. ...|..+-+ ..|||.|.+.+.|...+.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~----~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~ 73 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSD----CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 73 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTT----SCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHh----cCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH
Confidence 45677888999999998888775543 333 224544432 269999999988887665
No 215
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=40.32 E-value=29 Score=32.66 Aligned_cols=55 Identities=20% Similarity=0.339 Sum_probs=38.6
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEec------CceEEEEecCCCchhHHHHH
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD------RSCAIVVFGKPGLSNTFKNV 545 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id------~t~a~V~~~~~~~~~~~l~~ 545 (622)
...||+-++|..++..+|++.++ -||+..+|...- ...|||.|.+.+.|..++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~----~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~ 169 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLE----DKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVET 169 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHT----TSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred cCEEEecCCCCcCCHHHHHHHHh----cCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHh
Confidence 35688899999888888776444 344433555552 24699999999988876653
No 216
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=39.57 E-value=29 Score=28.16 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=36.5
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC--ceEEEEecCCCchh
Q 006991 485 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR--SCAIVVFGKPGLSN 540 (622)
Q Consensus 485 ~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~--t~a~V~~~~~~~~~ 540 (622)
...+.+|+-+.|..++-.+|++.++ -||+-.+|.-+-+ ..+||.|.+.+.|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~----~~G~i~~v~i~~~srGfaFV~F~~~~~A~ 62 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFC----QYGEVVDVFIPKPFRAFAFVTFADDKVAQ 62 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHT----TTSCEEEEECCSSCCSEEEEEESCHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHh----ccCCEEEEEEeeCCCCEEEEEECCHHHHH
Confidence 3467888889999998888776544 3444345555533 46999999998887
No 217
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=38.86 E-value=68 Score=28.20 Aligned_cols=57 Identities=14% Similarity=0.164 Sum_probs=40.3
Q ss_pred CCCcCCEEEEeccccccchhHHHHhhhhhhhccccce--EEEEecC------ceEEEEecCCCchhHHHH
Q 006991 483 KVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAF--NVRMVDR------SCAIVVFGKPGLSNTFKN 544 (622)
Q Consensus 483 ~~~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~--~V~~id~------t~a~V~~~~~~~~~~~l~ 544 (622)
.+..+..||+-+.|..++-.+|++.+++ |+. . +|..+-+ ..+||.|.+.+.|...+.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~----~~i-~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~ 102 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSG----LEI-VPNGITLPVDPEGKITGEAFVQFASQELAEKALG 102 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTT----SCE-EEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhc----CCc-eeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH
Confidence 3446778999999999988887765443 211 3 5555532 359999999998887665
No 218
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.47 E-value=23 Score=28.23 Aligned_cols=50 Identities=14% Similarity=0.298 Sum_probs=36.4
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC--ceEEEEecCCCchh
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR--SCAIVVFGKPGLSN 540 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~--t~a~V~~~~~~~~~ 540 (622)
..-|||-+.|..++..+|++.++ -||+..+|..+.+ ..|||.|.+.+.|+
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~----~~G~i~~v~i~~~~~g~afV~f~~~~~a~ 56 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFS----QYGDVMDVFIPKPFRAFAFVTFADDQIAQ 56 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHST----TTSCCCEEECCSSCCSCCEEECSCHHHHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHH----HcCCeeEEEEecCCCCEEEEEECCHHHHH
Confidence 46688888999999888776443 3444346766644 46999999998886
No 219
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=38.43 E-value=64 Score=33.57 Aligned_cols=102 Identities=12% Similarity=0.119 Sum_probs=63.3
Q ss_pred HHHHHHHHhCCCCEEechhHHHHHHHHHhccCCCCCCHHHHHHHHHccCCCccchhhHHhhhCcccccCchHHHHHHHHh
Q 006991 315 REVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKN 394 (622)
Q Consensus 315 r~Vi~~L~~skKpIVGHN~llDL~~iy~~F~gpLP~t~~EFk~~i~~lFP~I~DTKyLa~~~~~~~~~~~L~~~~~~l~~ 394 (622)
..+.+.+.+.+.+.||||+=.|+..+++.| |-.| ..++||...+.-+++ ....+|..+.+....
T Consensus 64 ~~L~~ll~d~~i~Kv~h~~k~Dl~~L~~~~-Gi~~--------------~~~fDt~lAa~lL~~-~~~~~L~~L~~~~l~ 127 (375)
T 1yt3_A 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVF-GELP--------------QPLIDTQILAAFCGR-PMSWGFASMVEEYSG 127 (375)
T ss_dssp HHHHHHHHCTTSEEEESSCHHHHHHHHHHH-SSCC--------------SSEEEHHHHHHHTTC-CTTCCHHHHHHHHHC
T ss_pred HHHHHHHcCCCceEEEeeHHHHHHHHHHHc-CCCC--------------CcEEEcHHHHHHcCC-CCChhHHHHHHHHcC
Confidence 334455566677889999999999998643 3222 247999886666665 335677777765422
Q ss_pred cCCCCceeecCCC-C-CC-C----CcccchhhHHHHHHHHHHHHHHhcc
Q 006991 395 RFFAPIEMEIPNQ-A-NE-N----EGKIHGHNVVKICQLFGKLCSILKI 436 (622)
Q Consensus 395 ~~~~~p~ve~~~~-~-~~-~----~~h~AGyDA~mTg~vF~~l~~~l~~ 436 (622)
.... ..... + .. . ..+-|+.||+.+-.++-.|...|..
T Consensus 128 ~~l~----K~~~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~~ 172 (375)
T 1yt3_A 128 VTLD----KSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEA 172 (375)
T ss_dssp CCCC----CTTTTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CCCC----CCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1100 00000 0 00 0 1133789999999999999998844
No 220
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=38.32 E-value=50 Score=31.00 Aligned_cols=57 Identities=14% Similarity=0.251 Sum_probs=42.0
Q ss_pred CEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhh
Q 006991 488 DVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNS 548 (622)
Q Consensus 488 ~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~ 548 (622)
.-|||-+.|..++-.+|++.++ -||+-.+|..+-+ ..+||.|.+.+.|...+..++.
T Consensus 16 ~tlfVgnLp~~~te~~L~~~F~----~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~ 79 (213)
T 4f02_A 16 ASLYVGDLHPDVTEAMLYEKFS----PAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNF 79 (213)
T ss_dssp CEEEEESCCTTCCHHHHHHHHG----GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cEEEEeCCCCCCCHHHHHHHHH----hhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhh
Confidence 3578889999999888776544 3444356776633 2599999999999988877654
No 221
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=37.80 E-value=43 Score=31.73 Aligned_cols=60 Identities=12% Similarity=0.266 Sum_probs=42.6
Q ss_pred CCEEEEeccc-cccchhHHHHhhhhhhhccccceEEEEecC--ceEEEEecCCCchhHHHHHhhhcc
Q 006991 487 EDVVFLWGFR-ERISAGILKNMLQGSHEVFAEAFNVRMVDR--SCAIVVFGKPGLSNTFKNVMNSKA 550 (622)
Q Consensus 487 ~~vv~i~~f~-~~~~~~~i~~~l~~~~~~F~~~~~V~~id~--t~a~V~~~~~~~~~~~l~~~~~~~ 550 (622)
..++|+-+.| ..++..+|++.++ .||...+|.-+-+ ..+||.|.+.+.|...+..++...
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~----~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~ 66 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFC----LYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNF 66 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHT----TTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCEEEEeCCCcccCCHHHHHHHHH----hcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 3578888898 7888777665333 3444346655544 579999999999999888886543
No 222
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=36.97 E-value=27 Score=27.98 Aligned_cols=58 Identities=5% Similarity=0.110 Sum_probs=40.0
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEE-ecCceEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRM-VDRSCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~-id~t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
..-+|+-+.|..++..+|++.+++ | .-.+|.. -....|||.|.+.+.|...+..++..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~----~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~ 63 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKD----Y-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQY 63 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCS----S-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhh----C-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCC
Confidence 345777889999998888765543 2 2223433 22346999999999999888877553
No 223
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=36.84 E-value=55 Score=32.31 Aligned_cols=64 Identities=13% Similarity=0.284 Sum_probs=43.4
Q ss_pred CCEEEEecccccc-----chhHHHHhhhhhhhccccceEEEEe-cCceEEEEecCCCchhHHHHHhhhcc
Q 006991 487 EDVVFLWGFRERI-----SAGILKNMLQGSHEVFAEAFNVRMV-DRSCAIVVFGKPGLSNTFKNVMNSKA 550 (622)
Q Consensus 487 ~~vv~i~~f~~~~-----~~~~i~~~l~~~~~~F~~~~~V~~i-d~t~a~V~~~~~~~~~~~l~~~~~~~ 550 (622)
...+||-+.|..+ +.....+.|..++.-||+-.+|.-+ +..+|||.|.+.+.|+..+.+++...
T Consensus 134 ~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 134 NKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp CCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred CceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 4567777887765 2233455555545555554455555 45679999999999999888887765
No 224
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=35.92 E-value=76 Score=29.73 Aligned_cols=101 Identities=7% Similarity=0.026 Sum_probs=56.9
Q ss_pred HHHHhCCCCEEechhHHHHHHHHHhccCCCCCCHHHHHHHHHccCCCccc-hhhHHhhhCcccccCchHHHHHHHHh-cC
Q 006991 319 DLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVID-VNYLLKDIGPVKKMTNISATIAYLKN-RF 396 (622)
Q Consensus 319 ~~L~~skKpIVGHN~llDL~~iy~~F~gpLP~t~~EFk~~i~~lFP~I~D-TKyLa~~~~~~~~~~~L~~~~~~l~~-~~ 396 (622)
+.|...+.+.||||+=.|+..+.+.| |-- ...++| |...+.-++| ....+|..+.+..-. ..
T Consensus 90 ~lL~d~~i~Kv~~~~k~D~~~L~~~~-gi~--------------~~~~fDlt~lAayll~~-~~~~~L~~L~~~~l~~~~ 153 (208)
T 2e6m_A 90 MLLENKSIKKAGVGIEGDQWKLLRDF-DVK--------------LESFVELTDVANEKLKC-AETWSLNGLVKHVLGKQL 153 (208)
T ss_dssp HHHTCTTSEEEESSHHHHHHHHHHHH-CCC--------------CCSEEEHHHHHHHHTTC-CCCCCHHHHHHHHHSCBC
T ss_pred HHhcCCCceEEEEeeHHHHHHHHHHC-CCC--------------CCCEEEHHHHHHHHccC-CCChhHHHHHHHHcCCCc
Confidence 33445567889999999999887643 211 223899 7553333455 344577777665422 11
Q ss_pred CCCceeecCCCCCCC----CcccchhhHHHHHHHHHHHHHHhc
Q 006991 397 FAPIEMEIPNQANEN----EGKIHGHNVVKICQLFGKLCSILK 435 (622)
Q Consensus 397 ~~~p~ve~~~~~~~~----~~h~AGyDA~mTg~vF~~l~~~l~ 435 (622)
.+........=.... ..+-|+.||+.+-.++-.|...|.
T Consensus 154 ~K~k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~ 196 (208)
T 2e6m_A 154 LKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGD 196 (208)
T ss_dssp CCCHHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 111011111000111 123479999999999988887663
No 225
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=35.27 E-value=44 Score=29.39 Aligned_cols=54 Identities=11% Similarity=0.271 Sum_probs=39.2
Q ss_pred CEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHH
Q 006991 488 DVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNV 545 (622)
Q Consensus 488 ~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~ 545 (622)
..||+-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..
T Consensus 4 ~~l~v~nLp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 4 CKMFIGGLNWDTTEDNLREYFG----KYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp GEEEECSCCTTCCHHHHHHHHT----TTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS
T ss_pred cEEEEeCCCCCCCHHHHHHHHH----hCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc
Confidence 4677788999999888776544 3444346665544 3699999999999877764
No 226
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=35.10 E-value=48 Score=30.86 Aligned_cols=59 Identities=8% Similarity=0.209 Sum_probs=38.9
Q ss_pred CEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc---eEEEEecCCCchhHHHHHhhhcc
Q 006991 488 DVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS---CAIVVFGKPGLSNTFKNVMNSKA 550 (622)
Q Consensus 488 ~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t---~a~V~~~~~~~~~~~l~~~~~~~ 550 (622)
-.|+|-+.|..++..+|++.+ .-||...+|...++. .+||.|.+.+.|...+.+++...
T Consensus 47 l~l~VgNL~~~vted~L~~~F----s~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~ 108 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIF----SKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQN 108 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHH----HHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBC
T ss_pred EEEEEeCcCCCCCHHHHHHHH----HhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 335555667777777765433 344443355555443 59999999999998888776654
No 227
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=34.53 E-value=39 Score=33.19 Aligned_cols=59 Identities=14% Similarity=0.287 Sum_probs=41.8
Q ss_pred cCCEEEEeccccc-cchhHHHHhhhhhhhccccceEEEEecCc--------eEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRER-ISAGILKNMLQGSHEVFAEAFNVRMVDRS--------CAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~~-~~~~~i~~~l~~~~~~F~~~~~V~~id~t--------~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....+++.+.|.. ++..+|++.++ -||.-..|..+-+. .|||.|.+.+.|...+ +++..
T Consensus 209 ~~~~l~v~nlp~~~~t~~~l~~~F~----~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~ 276 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDENLLRESFE----GFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRS 276 (292)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHG----GGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTE
T ss_pred CCceEEEECCCcccCCHHHHHHHHh----ccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCC
Confidence 4577888999998 98888776544 34443456655443 3999999999888776 65543
No 228
>2cpm_A Sperm-associated antigen 7; R3H domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.15 E-value=1e+02 Score=25.98 Aligned_cols=28 Identities=7% Similarity=0.063 Sum_probs=22.4
Q ss_pred CCccccccchHHHHHHHHHHHhccCCccee
Q 006991 241 PSMTIDVCSERQVQLVLKMLEDFSDVLVPL 270 (622)
Q Consensus 241 p~l~l~~~~~~q~~Lv~q~l~~~~~~l~~~ 270 (622)
|.+.+++.++++|++||++++. .++.+.
T Consensus 30 ~~v~L~PM~~~eRriIH~~l~~--~gl~S~ 57 (94)
T 2cpm_A 30 IKKKFQPMNKIERSILHDVVEV--AGLTSF 57 (94)
T ss_dssp CEEECCCCCSSHHHHHHHHHHH--HTCEEE
T ss_pred CceEeCCCCHHHHHHHHHHHHH--CCCEEE
Confidence 3477889999999999999987 555544
No 229
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=34.00 E-value=38 Score=32.52 Aligned_cols=103 Identities=10% Similarity=0.110 Sum_probs=62.7
Q ss_pred HHHHHHHHhCCCCEEechhHHHHHHHHHhccCCCCCCHHHHHHHHHccCCCccchhhHHhhh-C-cccccCchHHHHHHH
Q 006991 315 REVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI-G-PVKKMTNISATIAYL 392 (622)
Q Consensus 315 r~Vi~~L~~skKpIVGHN~llDL~~iy~~F~gpLP~t~~EFk~~i~~lFP~I~DTKyLa~~~-~-~~~~~~~L~~~~~~l 392 (622)
+.+.+.|...+..-|||++=-|+-.+++.| |-.| ..++||..++... + +.....+|..+.+.+
T Consensus 98 ~~L~~lL~d~~i~Kvg~~~~~D~~~L~~~~-g~~~--------------~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~ 162 (206)
T 1vk0_A 98 KDLYRFFASKFVTFVGVQIEEDLDLLRENH-GLVI--------------RNAINVGKLAAEARGTLVLEFLGTRELAHRV 162 (206)
T ss_dssp HHHHHHHTCSSSEEEESSCHHHHHHHHHHH-CCCC--------------SSEEEHHHHHHHHHTCGGGGGCCHHHHHHHH
T ss_pred HHHHHHhcCCCceEEEeccHHHHHHHHHhc-CCCc--------------CCeeeHHHHHHHHcCCCCCCCccHHHHHHHH
Confidence 445666766777789999999999997654 4333 2499998777543 2 223455788888776
Q ss_pred HhcCCCCceeecCCCCC---CCCcccchhhHHHHHHHHHHHHH
Q 006991 393 KNRFFAPIEMEIPNQAN---ENEGKIHGHNVVKICQLFGKLCS 432 (622)
Q Consensus 393 ~~~~~~~p~ve~~~~~~---~~~~h~AGyDA~mTg~vF~~l~~ 432 (622)
-....++..+...+=.. ....+-|.-|||..-.+|-+|..
T Consensus 163 lg~~lK~k~~~~SdW~~pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 163 LWSDLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HCCCCHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCcCCCCCcccCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 54222111111000001 01124489999999999988863
No 230
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=33.03 E-value=76 Score=30.88 Aligned_cols=59 Identities=8% Similarity=0.122 Sum_probs=42.7
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc-------eEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
+..+++-+.|..++..+|++.++ -||+...|..+-+. .+||.|.+.+.|...+..++..
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~----~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~ 160 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVR----PFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGK 160 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHG----GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCEEEEcCCCCcCCHHHHHHHHH----hcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 46788889999999888776554 34443456555332 5999999999999888777553
No 231
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=32.60 E-value=50 Score=28.16 Aligned_cols=55 Identities=18% Similarity=0.041 Sum_probs=38.0
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhcccc---ceEEEEecC------ceEEEEecCCCchhHHHH
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAE---AFNVRMVDR------SCAIVVFGKPGLSNTFKN 544 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~---~~~V~~id~------t~a~V~~~~~~~~~~~l~ 544 (622)
....||+-+.|..++..+|++.+++ |+. ...|..+-+ ..|||.|.+.+.|...+.
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~----~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~ 79 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSD----CTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK 79 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTT----SCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHH----cCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh
Confidence 4567888899999998888776554 333 224444322 259999999988886655
No 232
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.79 E-value=42 Score=28.59 Aligned_cols=53 Identities=13% Similarity=0.108 Sum_probs=37.8
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC------ceEEEEecCCCchhHHH
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR------SCAIVVFGKPGLSNTFK 543 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~------t~a~V~~~~~~~~~~~l 543 (622)
....|++-+.|...+-.||++.++++ . -.+|..+-+ ..+||.|.+.+.|...+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~----v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al 73 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-R----VDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL 73 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-C----CCEEEECCCTTCCCCSEEEEECSSHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-C----eeEEEEEECCCCCCCeEEEEEECCHHHHHHHH
Confidence 34678888999998888887655432 1 136665522 25999999998888776
No 233
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=30.72 E-value=70 Score=28.87 Aligned_cols=54 Identities=13% Similarity=0.252 Sum_probs=38.2
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc-------eEEEEecCCCchhHHHH
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS-------CAIVVFGKPGLSNTFKN 544 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t-------~a~V~~~~~~~~~~~l~ 544 (622)
...+|+-+.|..++..+|++.++ -||....|..+-+. .|||.|.+.+.|...+.
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFE----QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHT----TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred cceEEEeCCCCCCCHHHHHHHHh----cCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH
Confidence 46788899999999888776544 34443355555331 49999999988886665
No 234
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=29.67 E-value=64 Score=30.24 Aligned_cols=59 Identities=17% Similarity=0.286 Sum_probs=40.0
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEe-c-C---ceEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMV-D-R---SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~i-d-~---t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
..-+||-+.|..++-.+|++.++ -||...+|..+ | . ..+||.|.+.+.|...+..++..
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~----~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~ 166 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFS----AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGM 166 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHG----GGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred cccceECCcccccHHHHHHHHHh----hcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCC
Confidence 34578888999998888776544 34443344433 2 1 24999999999998887766543
No 235
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=28.80 E-value=49 Score=29.42 Aligned_cols=56 Identities=21% Similarity=0.099 Sum_probs=39.0
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhcccc---ceEEEEecC------ceEEEEecCCCchhHHHH
Q 006991 485 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAE---AFNVRMVDR------SCAIVVFGKPGLSNTFKN 544 (622)
Q Consensus 485 ~~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~---~~~V~~id~------t~a~V~~~~~~~~~~~l~ 544 (622)
.....||+-+.|...+-.+|++.+++ |+. ..+|..+-+ ..+||.|.+.+.|+..+.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~----~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~ 106 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSD----CTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 106 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTT----CCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH----hCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh
Confidence 45678888899999888887765543 443 223444422 259999999988887666
No 236
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=27.75 E-value=52 Score=28.90 Aligned_cols=55 Identities=5% Similarity=0.190 Sum_probs=38.9
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHH
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKN 544 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~ 544 (622)
....+++-+.|..++..+|++.++ -||+-.+|..+-+ ..|||.|.+.+.|...+.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 147 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFS----QWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ 147 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHH----TTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH
T ss_pred CCCeEEECCCCCCCCHHHHHHHHH----hCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh
Confidence 345688889999999888776554 3444346665543 269999999988876654
No 237
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=27.70 E-value=1.5e+02 Score=31.60 Aligned_cols=99 Identities=7% Similarity=0.011 Sum_probs=60.7
Q ss_pred HHHHHhCCCCEEechhHHHHHHHHHhccCCCCCCHHHHHHHHHccCCCccchhhHHhhhCcccccCchHHHHHHHHhcCC
Q 006991 318 IDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFF 397 (622)
Q Consensus 318 i~~L~~skKpIVGHN~llDL~~iy~~F~gpLP~t~~EFk~~i~~lFP~I~DTKyLa~~~~~~~~~~~L~~~~~~l~~~~~ 397 (622)
.+.|.+...+-||||+=.|+-.+++.| |-.| ..++||...+.-+++ ...+|..+.+.......
T Consensus 175 ~~lL~dp~i~KV~H~~k~Dl~~L~~~~-Gi~~--------------~~~fDT~lAa~lL~~--~~~gL~~Lv~~~Lg~~l 237 (428)
T 3saf_A 175 NESLTDPAIVKVFHGADSDIEWLQKDF-GLYV--------------VNMFDTHQAARLLNL--GRHSLDHLLKLYCNVDS 237 (428)
T ss_dssp HHHHTCTTSEEEESSCHHHHHHHHHHH-CCCC--------------SSEEEHHHHHHHTTC--SCCSHHHHHHHHHCCCC
T ss_pred HHHHcCCCceEEEeehHHHHHHHHHHc-CCCc--------------CceeechhHHHHhCC--CCCCHHHHHHHHcCCCC
Confidence 344556677789999999998887544 3222 237899876655553 23578877766543211
Q ss_pred CCceeecCCCC-CC-----CCcccchhhHHHHHHHHHHHHHHhcc
Q 006991 398 APIEMEIPNQA-NE-----NEGKIHGHNVVKICQLFGKLCSILKI 436 (622)
Q Consensus 398 ~~p~ve~~~~~-~~-----~~~h~AGyDA~mTg~vF~~l~~~l~~ 436 (622)
.. .....+ +. ...+-|+-||+.+-.++-.|...|..
T Consensus 238 ~K---~~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~~ 279 (428)
T 3saf_A 238 NK---QYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWE 279 (428)
T ss_dssp CC---TTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred Cc---cccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 000000 00 01134899999999999999998843
No 238
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=27.23 E-value=83 Score=30.57 Aligned_cols=60 Identities=5% Similarity=0.043 Sum_probs=42.0
Q ss_pred cCCEEEEecccccc-chhHHHHhhhhhhhccccceEEEEecC------ceEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRERI-SAGILKNMLQGSHEVFAEAFNVRMVDR------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~~~-~~~~i~~~l~~~~~~F~~~~~V~~id~------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....+++-+.|..+ +..+|++.++ -||....|....+ ..+||.|.+.+.|...+..++..
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 249 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALS----AVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGL 249 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTC----SSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTC
T ss_pred CccEEEEecCCcccCCHHHHHHHhh----CCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Confidence 45678889999987 6677665433 4444346665543 35999999999999887766554
No 239
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=25.12 E-value=1e+02 Score=26.38 Aligned_cols=58 Identities=17% Similarity=0.403 Sum_probs=38.3
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEe-cCceEEEEecCCCchhHHHHHhhhc
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMV-DRSCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~i-d~t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
....|||-++ .++..+|++.++ -||+..+|... ....|||.|.+.+.|...+..++..
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~----~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~ 96 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFS----PFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGT 96 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHS----TTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHH----ccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 3456776664 467777666544 34443355554 3457999999999999888776554
No 240
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=25.02 E-value=83 Score=34.78 Aligned_cols=72 Identities=17% Similarity=0.049 Sum_probs=50.5
Q ss_pred CCEEechhHHHHHHHHHhccCCCCCCHHHHHHHHHccCCCccchhhHHhhhCcccccCchHHHHHHHHhcCCCCceeecC
Q 006991 326 KPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAPIEMEIP 405 (622)
Q Consensus 326 KpIVGHN~llDL~~iy~~F~gpLP~t~~EFk~~i~~lFP~I~DTKyLa~~~~~~~~~~~L~~~~~~l~~~~~~~p~ve~~ 405 (622)
.++||||.=.|+. . +|- -++.++||..++--+.|- ..+|..+.+.....
T Consensus 57 ~~kV~hn~K~Dl~---~--~Gi--------------~~~~~fDT~laAyLL~p~--~~~L~~La~~yl~~---------- 105 (540)
T 4dfk_A 57 RGLLAKDLSVLAL---R--EGL--------------GLPPGDDPMLLAYLLDPS--NTTPEGVARRYGGE---------- 105 (540)
T ss_dssp CSTTHHHHHHHHH---H--TTC--------------CCCBCCCHHHHHHHHCTT--CCCHHHHHHHHTSC----------
T ss_pred CCEEEeccHHHHH---H--cCC--------------CCCcceeHHHHHHHhCCC--CCCHHHHHHHHhhh----------
Confidence 8889999999997 1 121 123478998877666664 44666666554221
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHh
Q 006991 406 NQANENEGKIHGHNVVKICQLFGKLCSIL 434 (622)
Q Consensus 406 ~~~~~~~~h~AGyDA~mTg~vF~~l~~~l 434 (622)
-.|.|..||..|..+|-.|...|
T Consensus 106 ------~gk~a~~DA~~t~~L~~~L~~~L 128 (540)
T 4dfk_A 106 ------WTEEAGERAALSERLFANLWGRL 128 (540)
T ss_dssp ------CCSCHHHHHHHHHHHHHHHHHHT
T ss_pred ------hccchHHHHHHHHHHHHHHHHHH
Confidence 12457899999999999999888
No 241
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=24.98 E-value=78 Score=27.30 Aligned_cols=58 Identities=12% Similarity=0.224 Sum_probs=41.0
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceE--EEEecCc-------eEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFN--VRMVDRS-------CAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~--V~~id~t-------~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
.+-+||-+.|..++-.+|++.+++ ||.... |..+-+. .+||.|.+. .|...+..++..
T Consensus 23 ~~~lfV~nL~~~~te~~L~~~F~~----~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~ 89 (131)
T 2m2b_A 23 NDTIILRNLNPHSTMDSILGALAP----YAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQAL 89 (131)
T ss_dssp CCEEEECSCCTTCCSHHHHHHHGG----GCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHH----hCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCC
Confidence 456888899999998887765543 333222 5555443 599999999 888888877664
No 242
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=24.87 E-value=88 Score=30.55 Aligned_cols=55 Identities=9% Similarity=0.034 Sum_probs=40.0
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEec-----CceEEEEecCCCchhHHHH
Q 006991 486 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD-----RSCAIVVFGKPGLSNTFKN 544 (622)
Q Consensus 486 ~~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id-----~t~a~V~~~~~~~~~~~l~ 544 (622)
....|||-+.|..++..+|++.++ -||+..+|..+- ...|||.|.+.+.|...+.
T Consensus 40 ~~~~l~V~nLp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~ 99 (292)
T 2ghp_A 40 ELTTVLVKNLPKSYNQNKVYKYFK----HCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT 99 (292)
T ss_dssp --CEEEEEEECTTCCHHHHHHHHG----GGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH
Confidence 356788899999999888776544 345444666654 3569999999999988773
No 243
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.79 E-value=55 Score=28.55 Aligned_cols=58 Identities=12% Similarity=0.084 Sum_probs=37.9
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-c-----eEEEEecCCCchhHHHH
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-S-----CAIVVFGKPGLSNTFKN 544 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-t-----~a~V~~~~~~~~~~~l~ 544 (622)
...||+-+.|...+-.||++.+++++.+=+...+|..+.+ + .+||.|.+.+.|...+.
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~ 86 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALR 86 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH
Confidence 5688888999988888888755543322111124555532 2 49999999988776554
No 244
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=29.76 E-value=16 Score=30.91 Aligned_cols=59 Identities=14% Similarity=0.274 Sum_probs=38.0
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceE--------EEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFN--------VRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~--------V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
...|||-+.|..++..+|++.+++++.+ .+ |..+-+ ..|||.|.+.+.|...+..++..
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i----~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVADYFKQIGII----KTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 80 (116)
Confidence 3456777888888877766544432221 23 333322 25999999999999887766543
No 245
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=23.62 E-value=1.1e+02 Score=29.69 Aligned_cols=58 Identities=12% Similarity=0.118 Sum_probs=41.6
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEe-cC-----ceEEEEecCCCchhHHHHHhhh
Q 006991 487 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMV-DR-----SCAIVVFGKPGLSNTFKNVMNS 548 (622)
Q Consensus 487 ~~vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~i-d~-----t~a~V~~~~~~~~~~~l~~~~~ 548 (622)
...+++-+.|..++..+|++.++ -||+..+|..+ |+ ..+||.|.+.+.|...+..++.
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~ 159 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFS----QFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGD 159 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHG----GGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred CCcccccCCCCCCCHHHHHHHHH----hcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcC
Confidence 34688889999888888776544 44443355444 32 2599999999999999888854
No 246
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=23.38 E-value=75 Score=26.61 Aligned_cols=57 Identities=12% Similarity=0.061 Sum_probs=43.0
Q ss_pred EEEeccccccchhHHHHhhhhhhhccc-cceEEEEecCceEEEEecCCCchhHHHHHh
Q 006991 490 VFLWGFRERISAGILKNMLQGSHEVFA-EAFNVRMVDRSCAIVVFGKPGLSNTFKNVM 546 (622)
Q Consensus 490 v~i~~f~~~~~~~~i~~~l~~~~~~F~-~~~~V~~id~t~a~V~~~~~~~~~~~l~~~ 546 (622)
+.+..+|...+..++.+.+....++=. ..+.|+|+|+.--+|.+++.+.....+...
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~ 74 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLY 74 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHH
Confidence 445677888888899988886555321 228999999999999999987777666655
No 247
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=23.27 E-value=64 Score=27.15 Aligned_cols=48 Identities=4% Similarity=-0.031 Sum_probs=32.2
Q ss_pred hHHHHhhhhhhhccccceEEEEecC---------ceEEEEecCCCchhHHHHHhhhc
Q 006991 502 GILKNMLQGSHEVFAEAFNVRMVDR---------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 502 ~~i~~~l~~~~~~F~~~~~V~~id~---------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
.+|++.|...+.-||+-.+|.-..+ ..+||.|.+.+.|...+.+++..
T Consensus 26 ~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 26 EEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 3566666654444555345554432 36999999999999888877654
No 248
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=22.16 E-value=68 Score=27.77 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=32.5
Q ss_pred ccccchhHHHHhhhhhhhccccceEEEEecC-----------ceEEEEecCCCchhHHHHHhhhc
Q 006991 496 RERISAGILKNMLQGSHEVFAEAFNVRMVDR-----------SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 496 ~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-----------t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
|.+|. .||++.|...+.-||+-.+|.-..+ ..+||.|.+.+.|...+.+++..
T Consensus 31 ~~el~-ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr 94 (118)
T 3ue2_A 31 PKDID-DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR 94 (118)
T ss_dssp GGGCC-TTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred HHHHH-HHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCC
Confidence 34443 3466665544444444334443322 24999999999999888877654
No 249
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=21.76 E-value=1.2e+02 Score=26.85 Aligned_cols=58 Identities=9% Similarity=0.198 Sum_probs=36.6
Q ss_pred EEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc---eEEEEecCCCchhHHHHHhhhcc
Q 006991 489 VVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS---CAIVVFGKPGLSNTFKNVMNSKA 550 (622)
Q Consensus 489 vv~i~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t---~a~V~~~~~~~~~~~l~~~~~~~ 550 (622)
.|+|-.-+..++..+|++ ++.-||+..+|...++. .|||.|.+.+.|...+.+++...
T Consensus 30 ~I~V~NL~~~vte~~L~~----lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~ 90 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQ----IFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQN 90 (130)
T ss_dssp EEEEESCCSCCCHHHHHH----HHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred EEEECCCCCCCCHHHHHH----HHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCe
Confidence 344545556667666443 23334443356555543 39999999999998888877654
No 250
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=20.99 E-value=1.6e+02 Score=25.19 Aligned_cols=48 Identities=6% Similarity=0.012 Sum_probs=32.7
Q ss_pred hHHHHhhhhhhhccccceEEEEecC---ceEEEEecCCCchhHHHHHhhhc
Q 006991 502 GILKNMLQGSHEVFAEAFNVRMVDR---SCAIVVFGKPGLSNTFKNVMNSK 549 (622)
Q Consensus 502 ~~i~~~l~~~~~~F~~~~~V~~id~---t~a~V~~~~~~~~~~~l~~~~~~ 549 (622)
.+|++.|...+.-||+-.+|.-..+ ..+||.|.+.+.|...+.+++..
T Consensus 28 ~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~ 78 (114)
T 3s6e_A 28 TEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGR 78 (114)
T ss_dssp HHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 4677776654444554346654444 36999999999999888877654
No 251
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.97 E-value=1.1e+02 Score=25.75 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=27.2
Q ss_pred ccchhHHHHhhhhhhhccccceEEEEecCceEEEEecCCCchhHHH
Q 006991 498 RISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFK 543 (622)
Q Consensus 498 ~~~~~~i~~~l~~~~~~F~~~~~V~~id~t~a~V~~~~~~~~~~~l 543 (622)
+|-..++...|-+.+.-||..+.|+.+.++ +||.|.+.++|...+
T Consensus 22 ~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-~fVtF~d~~sAlaAi 66 (91)
T 2dnr_A 22 NFFDDALIDELLQQFASFGEVILIRFVEDK-MWVTFLEGSSALNVL 66 (91)
T ss_dssp CSCCHHHHHHHHHHHHTTCCEEEEEECSSS-EEEEESSHHHHHHGG
T ss_pred ccCCHHHHHHHHHHHHhCCCeEEEEEecCC-EEEEECChHHHHHHH
Confidence 444444444444433445544588888877 899999975554443
Done!