Query 006992
Match_columns 622
No_of_seqs 399 out of 1651
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 17:24:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006992.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006992hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.6 1.2E-15 2.6E-20 143.9 11.9 85 368-453 29-117 (144)
2 KOG0153 Predicted RNA-binding 99.6 7E-16 1.5E-20 161.0 10.5 78 369-449 224-302 (377)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 3.7E-14 8E-19 148.2 11.8 81 371-452 267-351 (352)
4 KOG0149 Predicted RNA-binding 99.5 1.5E-14 3.2E-19 144.9 7.3 79 369-449 8-90 (247)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 1.2E-13 2.6E-18 144.4 10.5 80 372-452 2-85 (352)
6 PF00076 RRM_1: RNA recognitio 99.5 1.8E-13 3.9E-18 109.7 7.9 67 376-443 1-70 (70)
7 TIGR01659 sex-lethal sex-letha 99.4 3.3E-13 7.1E-18 144.0 10.0 81 370-451 104-188 (346)
8 KOG0125 Ataxin 2-binding prote 99.4 2.8E-13 6.1E-18 140.9 8.0 83 369-452 92-176 (376)
9 PLN03120 nucleic acid binding 99.4 7.8E-13 1.7E-17 135.5 10.7 78 373-452 4-82 (260)
10 KOG0111 Cyclophilin-type pepti 99.4 1.9E-13 4.2E-18 135.9 4.0 83 371-454 8-94 (298)
11 TIGR01659 sex-lethal sex-letha 99.4 4.7E-12 1E-16 135.2 12.5 83 371-454 191-279 (346)
12 TIGR01628 PABP-1234 polyadenyl 99.3 3.4E-12 7.4E-17 142.8 10.5 87 371-458 283-372 (562)
13 TIGR01645 half-pint poly-U bin 99.3 4.6E-12 1E-16 143.3 11.1 78 371-449 105-186 (612)
14 PLN03213 repressor of silencin 99.3 3.4E-12 7.4E-17 138.1 8.9 77 372-449 9-87 (759)
15 TIGR01645 half-pint poly-U bin 99.3 6.2E-12 1.3E-16 142.3 10.6 80 371-451 202-285 (612)
16 KOG0107 Alternative splicing f 99.3 5.4E-12 1.2E-16 122.1 8.3 80 371-452 8-87 (195)
17 KOG0148 Apoptosis-promoting RN 99.3 7.3E-12 1.6E-16 127.9 9.5 84 368-454 159-242 (321)
18 smart00362 RRM_2 RNA recogniti 99.3 1.8E-11 3.9E-16 96.0 9.1 70 375-445 1-72 (72)
19 PLN03121 nucleic acid binding 99.3 1.3E-11 2.9E-16 125.1 10.3 77 372-450 4-81 (243)
20 PF14259 RRM_6: RNA recognitio 99.3 1.1E-11 2.4E-16 100.9 7.8 67 376-443 1-70 (70)
21 KOG0148 Apoptosis-promoting RN 99.3 5.4E-12 1.2E-16 128.8 6.9 79 372-451 61-143 (321)
22 KOG0144 RNA-binding protein CU 99.2 1.2E-11 2.6E-16 132.5 8.4 87 371-458 122-214 (510)
23 KOG0113 U1 small nuclear ribon 99.2 2.6E-11 5.7E-16 125.2 10.2 79 371-450 99-181 (335)
24 COG0724 RNA-binding proteins ( 99.2 3.2E-11 7E-16 115.6 9.7 76 373-449 115-194 (306)
25 TIGR01628 PABP-1234 polyadenyl 99.2 2.4E-11 5.1E-16 136.1 10.0 74 375-449 2-79 (562)
26 TIGR01622 SF-CC1 splicing fact 99.2 4.1E-11 8.8E-16 130.2 11.2 80 371-451 184-267 (457)
27 TIGR01642 U2AF_lg U2 snRNP aux 99.2 4.8E-11 1E-15 131.2 11.8 80 371-451 293-376 (509)
28 KOG4207 Predicted splicing fac 99.2 1.7E-11 3.8E-16 121.3 7.2 80 371-451 11-94 (256)
29 KOG0122 Translation initiation 99.2 4.9E-11 1.1E-15 120.5 9.4 79 372-451 188-270 (270)
30 smart00360 RRM RNA recognition 99.2 7.7E-11 1.7E-15 91.9 7.9 67 378-445 1-71 (71)
31 TIGR01622 SF-CC1 splicing fact 99.2 7.5E-11 1.6E-15 128.2 10.4 79 370-450 86-168 (457)
32 KOG0126 Predicted RNA-binding 99.2 1.3E-11 2.7E-16 120.3 3.8 79 372-451 34-116 (219)
33 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 8.6E-11 1.9E-15 130.0 10.9 79 371-451 273-352 (481)
34 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 7.5E-11 1.6E-15 130.5 10.4 76 373-451 2-79 (481)
35 TIGR01648 hnRNP-R-Q heterogene 99.2 6.6E-11 1.4E-15 133.6 9.6 77 371-448 56-136 (578)
36 TIGR01648 hnRNP-R-Q heterogene 99.2 9.1E-11 2E-15 132.5 10.6 78 371-453 231-310 (578)
37 cd00590 RRM RRM (RNA recogniti 99.1 3.2E-10 6.9E-15 89.3 9.3 71 375-446 1-74 (74)
38 KOG0131 Splicing factor 3b, su 99.1 8E-11 1.7E-15 114.7 6.4 78 371-449 7-88 (203)
39 PF13893 RRM_5: RNA recognitio 99.1 2.7E-10 5.8E-15 89.8 7.7 56 391-447 1-56 (56)
40 KOG4205 RNA-binding protein mu 99.1 1.1E-10 2.4E-15 122.9 6.7 109 341-455 63-181 (311)
41 KOG0124 Polypyrimidine tract-b 99.1 2E-10 4.4E-15 121.0 7.1 75 374-449 114-192 (544)
42 KOG0108 mRNA cleavage and poly 99.0 5.1E-10 1.1E-14 122.6 9.0 80 374-454 19-102 (435)
43 KOG4205 RNA-binding protein mu 99.0 1.5E-10 3.3E-15 121.9 4.3 81 372-454 5-89 (311)
44 KOG0147 Transcriptional coacti 99.0 4.5E-10 9.8E-15 123.5 7.6 78 376-454 281-362 (549)
45 KOG0121 Nuclear cap-binding pr 99.0 5.9E-10 1.3E-14 103.6 6.5 77 371-448 34-114 (153)
46 smart00361 RRM_1 RNA recogniti 99.0 1.6E-09 3.4E-14 89.8 7.5 57 388-444 2-69 (70)
47 KOG0117 Heterogeneous nuclear 99.0 1.5E-09 3.3E-14 117.0 8.9 79 369-448 79-162 (506)
48 KOG0117 Heterogeneous nuclear 99.0 1.3E-09 2.8E-14 117.6 8.2 81 370-455 256-336 (506)
49 KOG0109 RNA-binding protein LA 98.9 1.8E-09 3.9E-14 111.6 6.9 76 374-454 3-78 (346)
50 KOG0145 RNA-binding protein EL 98.9 3.4E-09 7.4E-14 108.1 8.8 77 373-450 278-358 (360)
51 KOG0114 Predicted RNA-binding 98.9 4.9E-09 1.1E-13 94.5 8.3 80 371-451 16-96 (124)
52 TIGR01642 U2AF_lg U2 snRNP aux 98.9 4.1E-09 9E-14 116.0 9.3 78 368-449 170-259 (509)
53 KOG0127 Nucleolar protein fibr 98.9 3.4E-09 7.4E-14 116.5 8.3 82 373-455 117-201 (678)
54 KOG0105 Alternative splicing f 98.9 3.2E-09 6.9E-14 104.0 6.9 80 371-451 4-84 (241)
55 KOG0132 RNA polymerase II C-te 98.9 4E-09 8.7E-14 119.6 8.2 85 367-454 415-499 (894)
56 KOG0144 RNA-binding protein CU 98.8 4.1E-09 8.9E-14 113.4 7.0 84 370-454 31-121 (510)
57 KOG0127 Nucleolar protein fibr 98.8 1.9E-08 4.2E-13 110.8 12.3 82 373-455 292-383 (678)
58 KOG0145 RNA-binding protein EL 98.8 9.3E-09 2E-13 105.0 8.6 82 369-451 37-122 (360)
59 KOG0131 Splicing factor 3b, su 98.8 7.5E-09 1.6E-13 101.1 6.0 108 341-454 68-181 (203)
60 KOG0123 Polyadenylate-binding 98.8 1.3E-08 2.8E-13 110.0 7.4 77 376-454 79-157 (369)
61 KOG0130 RNA-binding protein RB 98.7 1.5E-08 3.3E-13 95.0 5.8 78 374-452 73-154 (170)
62 KOG0146 RNA-binding protein ET 98.7 2.6E-08 5.5E-13 102.2 7.5 84 371-455 17-106 (371)
63 KOG4212 RNA-binding protein hn 98.7 3.7E-08 8.1E-13 106.2 7.9 80 368-448 39-122 (608)
64 KOG4206 Spliceosomal protein s 98.6 7.6E-08 1.6E-12 96.7 7.7 82 373-455 9-95 (221)
65 KOG0146 RNA-binding protein ET 98.6 3.7E-08 8E-13 101.0 4.7 82 371-453 283-368 (371)
66 KOG0415 Predicted peptidyl pro 98.6 1.4E-07 3.1E-12 99.7 8.4 82 368-450 234-319 (479)
67 KOG0109 RNA-binding protein LA 98.5 1.1E-07 2.5E-12 98.4 5.7 83 370-457 75-157 (346)
68 KOG4661 Hsp27-ERE-TATA-binding 98.4 3.9E-07 8.4E-12 100.9 6.6 77 372-449 404-484 (940)
69 KOG0124 Polypyrimidine tract-b 98.4 3.6E-07 7.8E-12 97.0 6.1 79 370-449 207-289 (544)
70 KOG0123 Polyadenylate-binding 98.4 4.6E-07 1E-11 98.0 7.1 89 370-459 164-255 (369)
71 KOG0110 RNA-binding protein (R 98.4 8E-07 1.7E-11 100.7 8.1 75 374-449 516-597 (725)
72 KOG0151 Predicted splicing reg 98.3 8E-07 1.7E-11 100.6 7.6 82 367-449 168-256 (877)
73 KOG0110 RNA-binding protein (R 98.3 3.4E-07 7.4E-12 103.6 4.6 80 372-452 612-695 (725)
74 KOG4208 Nucleolar RNA-binding 98.3 1.1E-06 2.3E-11 87.7 7.1 78 372-450 48-130 (214)
75 KOG0226 RNA-binding proteins [ 98.3 6.6E-07 1.4E-11 91.5 4.7 89 370-459 187-279 (290)
76 KOG4212 RNA-binding protein hn 98.3 1.6E-06 3.5E-11 93.9 7.1 78 367-447 530-608 (608)
77 KOG0116 RasGAP SH3 binding pro 98.2 2E-06 4.3E-11 94.3 7.1 75 373-449 288-366 (419)
78 KOG4454 RNA binding protein (R 98.2 7.3E-07 1.6E-11 89.6 3.1 82 368-451 4-88 (267)
79 KOG0106 Alternative splicing f 98.2 1.6E-06 3.5E-11 87.4 4.4 71 374-449 2-72 (216)
80 KOG0533 RRM motif-containing p 98.0 1.3E-05 2.9E-10 82.3 8.4 80 369-449 79-161 (243)
81 KOG4209 Splicing factor RNPS1, 97.9 1.1E-05 2.4E-10 82.4 5.7 78 371-450 99-180 (231)
82 KOG2135 Proteins containing th 97.8 2.3E-05 4.9E-10 85.9 4.6 83 366-451 365-447 (526)
83 KOG4660 Protein Mei2, essentia 97.7 1.8E-05 4E-10 88.0 3.7 74 368-443 70-143 (549)
84 KOG0147 Transcriptional coacti 97.7 1.2E-05 2.6E-10 89.3 2.2 77 370-448 176-256 (549)
85 KOG1548 Transcription elongati 97.5 0.00019 4.2E-09 76.4 7.5 77 371-448 132-219 (382)
86 KOG1457 RNA binding protein (c 97.5 0.00035 7.5E-09 70.9 8.2 83 371-454 32-122 (284)
87 PF00642 zf-CCCH: Zinc finger 97.4 3.5E-05 7.6E-10 53.5 -0.2 23 231-253 3-26 (27)
88 KOG1190 Polypyrimidine tract-b 97.3 0.00058 1.3E-08 74.1 8.0 76 373-449 297-372 (492)
89 KOG4211 Splicing factor hnRNP- 97.1 0.0016 3.5E-08 72.2 8.7 79 371-452 8-88 (510)
90 PF04059 RRM_2: RNA recognitio 97.1 0.0022 4.7E-08 57.7 7.7 78 374-452 2-89 (97)
91 KOG0106 Alternative splicing f 97.0 0.00042 9.1E-09 70.3 3.1 70 371-445 97-166 (216)
92 KOG4210 Nuclear localization s 97.0 0.0004 8.7E-09 73.1 2.7 80 372-453 183-267 (285)
93 smart00356 ZnF_C3H1 zinc finge 96.9 0.00043 9.3E-09 47.0 1.5 22 232-253 5-26 (27)
94 PF14605 Nup35_RRM_2: Nup53/35 96.9 0.002 4.3E-08 51.5 5.4 52 374-429 2-53 (53)
95 COG5175 MOT2 Transcriptional r 96.8 0.0022 4.8E-08 68.3 6.5 80 370-449 111-202 (480)
96 PF11608 Limkain-b1: Limkain b 96.7 0.0044 9.5E-08 54.6 6.6 72 374-452 3-79 (90)
97 KOG1548 Transcription elongati 96.7 0.0088 1.9E-07 64.1 9.8 85 368-452 260-354 (382)
98 PF08777 RRM_3: RNA binding mo 96.6 0.0021 4.6E-08 58.2 4.2 56 375-433 3-58 (105)
99 KOG0120 Splicing factor U2AF, 96.6 0.0017 3.8E-08 72.8 4.1 83 371-454 287-373 (500)
100 KOG0129 Predicted RNA-binding 96.3 0.0083 1.8E-07 67.0 7.0 75 371-450 257-341 (520)
101 KOG0120 Splicing factor U2AF, 96.2 0.01 2.2E-07 66.9 7.3 61 389-449 424-491 (500)
102 KOG4307 RNA binding protein RB 96.1 0.0083 1.8E-07 69.0 5.9 80 371-451 432-515 (944)
103 PF05172 Nup35_RRM: Nup53/35/4 96.1 0.024 5.2E-07 51.3 7.7 70 374-448 7-90 (100)
104 PF14608 zf-CCCH_2: Zinc finge 96.0 0.0036 7.9E-08 40.3 1.4 18 233-252 1-18 (19)
105 KOG4211 Splicing factor hnRNP- 95.8 0.026 5.6E-07 63.0 8.0 76 371-448 101-180 (510)
106 PF00658 PABP: Poly-adenylate 95.8 0.0089 1.9E-07 51.0 3.5 50 8-60 22-71 (72)
107 KOG4206 Spliceosomal protein s 95.7 0.038 8.3E-07 56.3 8.1 77 370-448 143-220 (221)
108 KOG1995 Conserved Zn-finger pr 95.6 0.013 2.8E-07 63.1 4.5 82 370-452 63-156 (351)
109 KOG0129 Predicted RNA-binding 95.5 0.035 7.5E-07 62.3 7.5 79 368-448 365-452 (520)
110 KOG1855 Predicted RNA-binding 95.4 0.0089 1.9E-07 65.6 2.6 62 371-433 229-307 (484)
111 KOG1457 RNA binding protein (c 95.3 0.017 3.7E-07 59.0 4.0 69 368-437 205-273 (284)
112 KOG2185 Predicted RNA-processi 95.3 0.0067 1.5E-07 66.1 1.0 26 230-255 139-164 (486)
113 KOG1456 Heterogeneous nuclear 95.3 0.11 2.5E-06 56.4 10.2 79 370-449 284-362 (494)
114 KOG3152 TBP-binding protein, a 95.0 0.013 2.9E-07 60.7 2.2 69 372-441 73-157 (278)
115 KOG2314 Translation initiation 95.0 0.028 6.1E-07 63.6 4.8 74 373-448 58-142 (698)
116 smart00517 PolyA C-terminal do 94.9 0.017 3.8E-07 48.3 2.2 51 8-61 11-61 (64)
117 PF08952 DUF1866: Domain of un 94.5 0.17 3.7E-06 48.8 8.1 73 371-449 25-106 (146)
118 KOG2202 U2 snRNP splicing fact 94.0 0.025 5.4E-07 58.7 1.6 59 389-447 83-145 (260)
119 KOG1677 CCCH-type Zn-finger pr 93.9 0.024 5.3E-07 60.0 1.4 29 227-255 173-202 (332)
120 KOG4849 mRNA cleavage factor I 93.6 0.058 1.3E-06 58.1 3.5 75 373-448 80-160 (498)
121 KOG1996 mRNA splicing factor [ 92.6 0.25 5.5E-06 52.4 6.3 63 388-450 300-367 (378)
122 KOG4307 RNA binding protein RB 92.3 0.46 1E-05 55.3 8.3 75 371-446 865-943 (944)
123 KOG1190 Polypyrimidine tract-b 92.2 0.29 6.2E-06 54.0 6.4 77 371-448 412-489 (492)
124 PF10309 DUF2414: Protein of u 92.2 0.64 1.4E-05 38.8 6.9 55 373-432 5-62 (62)
125 PF04847 Calcipressin: Calcipr 90.9 0.71 1.5E-05 46.1 7.1 63 387-451 8-72 (184)
126 KOG0112 Large RNA-binding prot 90.8 0.26 5.6E-06 58.6 4.5 83 370-455 452-536 (975)
127 KOG4676 Splicing factor, argin 90.5 0.45 9.8E-06 52.2 5.7 76 375-452 9-91 (479)
128 KOG0128 RNA-binding protein SA 90.5 0.042 9.2E-07 64.6 -2.2 67 371-438 665-735 (881)
129 KOG1039 Predicted E3 ubiquitin 89.5 0.13 2.9E-06 55.7 0.8 23 232-254 9-31 (344)
130 KOG1456 Heterogeneous nuclear 89.3 1 2.2E-05 49.3 7.1 77 373-450 120-199 (494)
131 KOG0128 RNA-binding protein SA 89.2 0.18 4E-06 59.5 1.7 76 372-448 735-813 (881)
132 KOG2068 MOT2 transcription fac 89.1 0.15 3.2E-06 54.8 0.7 83 371-453 75-166 (327)
133 KOG2891 Surface glycoprotein [ 89.0 0.42 9.2E-06 50.5 4.0 36 372-408 148-195 (445)
134 KOG2416 Acinus (induces apopto 88.3 0.53 1.2E-05 54.0 4.4 81 366-449 437-521 (718)
135 KOG2193 IGF-II mRNA-binding pr 87.6 1.4 3.1E-05 48.9 7.0 78 374-454 2-80 (584)
136 KOG4285 Mitotic phosphoprotein 87.4 1.1 2.3E-05 48.0 5.8 61 387-450 209-270 (350)
137 KOG0105 Alternative splicing f 87.1 1.8 3.9E-05 43.7 6.8 73 371-447 113-187 (241)
138 KOG0112 Large RNA-binding prot 86.9 0.15 3.3E-06 60.5 -0.8 81 368-449 367-450 (975)
139 KOG0115 RNA-binding protein p5 85.8 0.66 1.4E-05 48.5 3.2 74 374-448 32-112 (275)
140 KOG1365 RNA-binding protein Fu 85.6 1.2 2.7E-05 48.9 5.2 67 376-444 164-237 (508)
141 KOG1365 RNA-binding protein Fu 82.7 1.4 3.1E-05 48.4 4.2 75 373-448 280-360 (508)
142 PF15023 DUF4523: Protein of u 81.1 7 0.00015 38.1 7.7 74 370-448 83-160 (166)
143 KOG2494 C3H1-type Zn-finger pr 78.1 0.76 1.6E-05 49.5 0.3 23 230-252 36-59 (331)
144 PF08675 RNA_bind: RNA binding 76.9 9.1 0.0002 34.1 6.5 56 372-433 8-63 (87)
145 COG5084 YTH1 Cleavage and poly 74.6 1.5 3.3E-05 46.6 1.4 24 232-255 135-159 (285)
146 KOG4210 Nuclear localization s 71.2 2.4 5.2E-05 45.0 1.9 80 371-451 86-169 (285)
147 KOG1595 CCCH-type Zn-finger pr 68.5 2.4 5.3E-05 48.3 1.4 26 228-253 233-258 (528)
148 KOG1040 Polyadenylation factor 67.9 3.2 7E-05 45.0 2.1 26 228-253 74-99 (325)
149 KOG1040 Polyadenylation factor 67.2 2.1 4.5E-05 46.4 0.5 28 228-255 131-158 (325)
150 PF10650 zf-C3H1: Putative zin 66.9 3.1 6.7E-05 28.4 1.1 19 233-252 2-21 (23)
151 PF03880 DbpA: DbpA RNA bindin 66.7 5.6 0.00012 33.6 2.9 59 384-447 11-74 (74)
152 KOG1763 Uncharacterized conser 63.6 2.7 5.9E-05 44.8 0.5 21 233-253 94-114 (343)
153 PF07576 BRAP2: BRCA1-associat 63.3 41 0.00089 31.1 8.1 67 372-439 12-81 (110)
154 KOG2253 U1 snRNP complex, subu 62.0 5 0.00011 46.9 2.2 73 369-447 36-108 (668)
155 PF03467 Smg4_UPF3: Smg-4/UPF3 60.9 9.3 0.0002 37.8 3.7 67 372-439 6-82 (176)
156 KOG2591 c-Mpl binding protein, 57.8 16 0.00035 42.2 5.3 66 374-443 176-245 (684)
157 KOG1492 C3H1-type Zn-finger pr 57.1 4.5 9.7E-05 41.7 0.7 21 233-253 208-229 (377)
158 KOG4454 RNA binding protein (R 56.0 2.7 5.8E-05 43.4 -1.1 72 372-444 79-157 (267)
159 KOG4574 RNA-binding protein (c 55.3 8.3 0.00018 46.3 2.6 77 371-450 296-374 (1007)
160 KOG0804 Cytoplasmic Zn-finger 42.5 58 0.0013 37.0 6.4 68 371-439 72-142 (493)
161 COG5063 CTH1 CCCH-type Zn-fing 38.4 15 0.00032 39.7 1.1 29 227-255 270-299 (351)
162 KOG2494 C3H1-type Zn-finger pr 37.2 15 0.00033 39.9 1.0 23 230-253 70-92 (331)
163 COG5084 YTH1 Cleavage and poly 36.0 18 0.00039 38.8 1.3 26 230-255 103-128 (285)
164 KOG2318 Uncharacterized conser 34.4 1E+02 0.0022 36.2 6.9 73 371-444 172-300 (650)
165 KOG4410 5-formyltetrahydrofola 33.8 1.5E+02 0.0032 32.2 7.5 55 366-422 323-377 (396)
166 KOG1492 C3H1-type Zn-finger pr 32.4 16 0.00036 37.7 0.3 21 232-253 262-282 (377)
167 KOG4660 Protein Mei2, essentia 32.0 60 0.0013 37.6 4.6 79 373-452 388-475 (549)
168 KOG4676 Splicing factor, argin 28.2 15 0.00033 40.8 -0.8 64 373-438 151-214 (479)
169 COG5152 Uncharacterized conser 27.7 24 0.00051 36.2 0.5 21 233-253 143-164 (259)
170 PF15513 DUF4651: Domain of un 27.4 78 0.0017 26.8 3.4 18 389-406 9-26 (62)
171 KOG1677 CCCH-type Zn-finger pr 26.6 28 0.00061 37.0 0.9 28 228-255 129-158 (332)
172 KOG4019 Calcineurin-mediated s 24.1 65 0.0014 32.7 2.8 78 373-452 10-92 (193)
173 KOG2202 U2 snRNP splicing fact 23.5 37 0.0008 35.9 1.0 24 229-252 150-173 (260)
174 COG5252 Uncharacterized conser 22.4 32 0.0007 36.1 0.3 22 233-254 87-108 (299)
175 PF11767 SET_assoc: Histone ly 22.2 4.9E+02 0.011 22.1 7.3 55 385-444 11-65 (66)
176 COG0724 RNA-binding proteins ( 22.1 89 0.0019 29.8 3.3 40 369-409 221-260 (306)
177 PF12186 AcylCoA_dehyd_C: Acyl 21.2 34 0.00073 32.1 0.2 15 23-37 64-78 (114)
178 KOG4791 Uncharacterized conser 20.6 34 0.00073 39.1 0.0 20 233-252 120-139 (667)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.64 E-value=1.2e-15 Score=143.92 Aligned_cols=85 Identities=15% Similarity=0.274 Sum_probs=78.1
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~ 443 (622)
......++|||++| ++++||++|+++|++||+|.+|+|+.| ++||||||+|.+.++|+.|++.||++.|+|++|+
T Consensus 29 ~~~~~~~~lfVgnL-~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~ 107 (144)
T PLN03134 29 SLRLMSTKLFIGGL-SWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIR 107 (144)
T ss_pred cccCCCCEEEEeCC-CCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 44456789999999 999999999999999999999999986 6899999999999999999999999999999999
Q ss_pred EEeCccCCCC
Q 006992 444 VKPYKEKGKV 453 (622)
Q Consensus 444 Vk~Ak~K~k~ 453 (622)
|.++.++...
T Consensus 108 V~~a~~~~~~ 117 (144)
T PLN03134 108 VNPANDRPSA 117 (144)
T ss_pred EEeCCcCCCC
Confidence 9999876654
No 2
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=7e-16 Score=161.00 Aligned_cols=78 Identities=22% Similarity=0.332 Sum_probs=72.0
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhC-CCceEcCeEEEEEeC
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKG-NPHFVCDARVLVKPY 447 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~m-ng~~I~GR~I~Vk~A 447 (622)
.+...++||||+| ...++|.+|+++|.+||+|+.|+|.. .++||||+|.+.++|+.|.++. |...|+|.+|.|.|.
T Consensus 224 eD~~I~tLyIg~l-~d~v~e~dIrdhFyqyGeirsi~~~~--~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 224 EDTSIKTLYIGGL-NDEVLEQDIRDHFYQYGEIRSIRILP--RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred cccceeEEEeccc-ccchhHHHHHHHHhhcCCeeeEEeec--ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 3467899999999 77999999999999999999999998 7889999999999999988875 778889999999999
Q ss_pred cc
Q 006992 448 KE 449 (622)
Q Consensus 448 k~ 449 (622)
.+
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 88
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.53 E-value=3.7e-14 Score=148.24 Aligned_cols=81 Identities=20% Similarity=0.204 Sum_probs=75.9
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
...++|||+|| ++++++++|+++|++||.|++|+|++| ++||||||+|.+.++|.+|+..|||..|+||+|.|.+
T Consensus 267 ~~~~~lfV~NL-~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~ 345 (352)
T TIGR01661 267 GAGYCIFVYNL-SPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSF 345 (352)
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34457999999 999999999999999999999999987 5899999999999999999999999999999999999
Q ss_pred CccCCC
Q 006992 447 YKEKGK 452 (622)
Q Consensus 447 Ak~K~k 452 (622)
+..|.+
T Consensus 346 ~~~~~~ 351 (352)
T TIGR01661 346 KTNKAY 351 (352)
T ss_pred ccCCCC
Confidence 988865
No 4
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=1.5e-14 Score=144.95 Aligned_cols=79 Identities=14% Similarity=0.198 Sum_probs=72.9
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
.+-..+|||||+| .|+++.+.|++||++||+|+++.|+.| |+||||||||+|.++|.+|++. ....|+||+..|
T Consensus 8 ~DT~~TKifVggL-~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNc 85 (247)
T KOG0149|consen 8 GDTTFTKIFVGGL-AWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANC 85 (247)
T ss_pred CCceEEEEEEcCc-ccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCccccccccc
Confidence 3456789999999 999999999999999999999999997 7999999999999999999999 667899999999
Q ss_pred EeCcc
Q 006992 445 KPYKE 449 (622)
Q Consensus 445 k~Ak~ 449 (622)
+.|.-
T Consensus 86 nlA~l 90 (247)
T KOG0149|consen 86 NLASL 90 (247)
T ss_pred chhhh
Confidence 98754
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.48 E-value=1.2e-13 Score=144.44 Aligned_cols=80 Identities=16% Similarity=0.326 Sum_probs=74.9
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 372 ~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
...+|||++| +.++||++|+++|++||+|.+|+|++| ++||||||+|.+.++|++||+.||+..|.|++|.|.++
T Consensus 2 ~~~~l~V~nL-p~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a 80 (352)
T TIGR01661 2 SKTNLIVNYL-PQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYA 80 (352)
T ss_pred CCcEEEEeCC-CCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEee
Confidence 3679999999 999999999999999999999999986 58899999999999999999999999999999999999
Q ss_pred ccCCC
Q 006992 448 KEKGK 452 (622)
Q Consensus 448 k~K~k 452 (622)
+++..
T Consensus 81 ~~~~~ 85 (352)
T TIGR01661 81 RPSSD 85 (352)
T ss_pred ccccc
Confidence 87653
No 6
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.46 E-value=1.8e-13 Score=109.65 Aligned_cols=67 Identities=18% Similarity=0.397 Sum_probs=63.9
Q ss_pred EEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 006992 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (622)
Q Consensus 376 IYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~ 443 (622)
|||+|| +.++|+++|+++|++||.|..|.|+.+ +.+|||||+|.++++|++|++.++++.++|+.|+
T Consensus 1 l~v~nl-p~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNL-PPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESE-TTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCC-CCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999 999999999999999999999999884 6889999999999999999999999999999885
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.43 E-value=3.3e-13 Score=144.00 Aligned_cols=81 Identities=17% Similarity=0.263 Sum_probs=75.5
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
....++|||++| ++++||++|+++|++||+|++|+|+.| ++||||||+|.++++|++|++.|++..|.+++|+|.
T Consensus 104 ~~~~~~LfVgnL-p~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 104 NNSGTNLIVNYL-PQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 356789999999 999999999999999999999999986 689999999999999999999999999999999999
Q ss_pred eCccCC
Q 006992 446 PYKEKG 451 (622)
Q Consensus 446 ~Ak~K~ 451 (622)
++++..
T Consensus 183 ~a~p~~ 188 (346)
T TIGR01659 183 YARPGG 188 (346)
T ss_pred cccccc
Confidence 987643
No 8
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=2.8e-13 Score=140.89 Aligned_cols=83 Identities=22% Similarity=0.326 Sum_probs=77.1
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D--ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
.....++|||.|| ++.+.|-||+..|++||+|.||+|+.. -+||||||||++.++|++|-+++++..|.||+|.|..
T Consensus 92 s~~~pkRLhVSNI-PFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 92 SKDTPKRLHVSNI-PFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCCceeEeecC-CccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 3456789999999 999999999999999999999999996 4899999999999999999999999999999999999
Q ss_pred CccCCC
Q 006992 447 YKEKGK 452 (622)
Q Consensus 447 Ak~K~k 452 (622)
|..+--
T Consensus 171 ATarV~ 176 (376)
T KOG0125|consen 171 ATARVH 176 (376)
T ss_pred cchhhc
Confidence 987643
No 9
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.41 E-value=7.8e-13 Score=135.54 Aligned_cols=78 Identities=19% Similarity=0.326 Sum_probs=72.2
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccC-CCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCccCC
Q 006992 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQ-KRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKG 451 (622)
Q Consensus 373 ~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~Dk-sRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~K~ 451 (622)
.++|||+|| ++.+||++|+++|+.||+|++|+|+.|+ .+|||||+|.++++|+.|+. |++..|.|+.|.|.++..-.
T Consensus 4 ~rtVfVgNL-s~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 4 VRTVKVSNV-SLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCCC
Confidence 689999999 9999999999999999999999999984 78999999999999999996 79999999999999987544
Q ss_pred C
Q 006992 452 K 452 (622)
Q Consensus 452 k 452 (622)
.
T Consensus 82 ~ 82 (260)
T PLN03120 82 L 82 (260)
T ss_pred C
Confidence 3
No 10
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.9e-13 Score=135.90 Aligned_cols=83 Identities=22% Similarity=0.317 Sum_probs=77.7
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
...|+||||+| ..++||.-|...|-.||.|.+|.||.| ++||||||+|...|+|.+|+..||..+|.||.|+|..
T Consensus 8 ~~KrtlYVGGl-adeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 8 NQKRTLYVGGL-ADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred ccceeEEeccc-hHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 46799999999 779999999999999999999999997 8999999999999999999999999999999999999
Q ss_pred CccCCCCc
Q 006992 447 YKEKGKVP 454 (622)
Q Consensus 447 Ak~K~k~~ 454 (622)
|+|.+-..
T Consensus 87 AkP~kike 94 (298)
T KOG0111|consen 87 AKPEKIKE 94 (298)
T ss_pred cCCccccC
Confidence 99866543
No 11
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.35 E-value=4.7e-12 Score=135.21 Aligned_cols=83 Identities=20% Similarity=0.269 Sum_probs=75.2
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcC--eEEEE
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCD--ARVLV 444 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~G--R~I~V 444 (622)
...++|||++| ++.+||++|+++|++||+|++|+|+.| ++||||||+|.+.++|++||+.||++.+.| +.|.|
T Consensus 191 ~~~~~lfV~nL-p~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V 269 (346)
T TIGR01659 191 IKDTNLYVTNL-PRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTV 269 (346)
T ss_pred cccceeEEeCC-CCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEE
Confidence 35678999999 999999999999999999999999986 578999999999999999999999999976 78999
Q ss_pred EeCccCCCCc
Q 006992 445 KPYKEKGKVP 454 (622)
Q Consensus 445 k~Ak~K~k~~ 454 (622)
++++++.+..
T Consensus 270 ~~a~~~~~~~ 279 (346)
T TIGR01659 270 RLAEEHGKAK 279 (346)
T ss_pred EECCcccccc
Confidence 9998766543
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.33 E-value=3.4e-12 Score=142.75 Aligned_cols=87 Identities=20% Similarity=0.329 Sum_probs=79.2
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
....+|||+|| ++++|+++|+++|++||+|++|+|+.| ++||||||+|.+.++|.+|+..||+..|+|++|.|.+|
T Consensus 283 ~~~~~l~V~nl-~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNL-DDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCC-CCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 45678999999 999999999999999999999999986 68999999999999999999999999999999999999
Q ss_pred ccCCCCchHHH
Q 006992 448 KEKGKVPDKYR 458 (622)
Q Consensus 448 k~K~k~~~~~r 458 (622)
..+..+...+.
T Consensus 362 ~~k~~~~~~~~ 372 (562)
T TIGR01628 362 QRKEQRRAHLQ 372 (562)
T ss_pred cCcHHHHHHHH
Confidence 98776654443
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.33 E-value=4.6e-12 Score=143.31 Aligned_cols=78 Identities=18% Similarity=0.425 Sum_probs=72.6
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
...++||||+| +++++|++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.||++.|.||+|+|.+
T Consensus 105 ~~~~rLfVGnL-p~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 105 AIMCRVYVGSI-SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred cCCCEEEEcCC-CCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 34679999999 999999999999999999999999986 6899999999999999999999999999999999986
Q ss_pred Ccc
Q 006992 447 YKE 449 (622)
Q Consensus 447 Ak~ 449 (622)
...
T Consensus 184 p~~ 186 (612)
T TIGR01645 184 PSN 186 (612)
T ss_pred ccc
Confidence 543
No 14
>PLN03213 repressor of silencing 3; Provisional
Probab=99.32 E-value=3.4e-12 Score=138.14 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=72.7
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCH--HHHHHHHHhCCCceEcCeEEEEEeCcc
Q 006992 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYP--ETVKIILAKGNPHFVCDARVLVKPYKE 449 (622)
Q Consensus 372 ~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~--e~A~~Al~~mng~~I~GR~I~Vk~Ak~ 449 (622)
...+|||||| .+.+|+++|+..|++||.|.+|.|++...||||||+|... .++.+|++.||+..+.||.|+|..|++
T Consensus 9 ~gMRIYVGNL-SydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 9 GGVRLHVGGL-GESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred cceEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 3578999999 9999999999999999999999999887899999999987 789999999999999999999999975
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.31 E-value=6.2e-12 Score=142.31 Aligned_cols=80 Identities=14% Similarity=0.231 Sum_probs=74.7
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
...++|||+|| +.++++++|+++|+.||+|++|+|++| ++||||||+|.+.++|.+|++.||+..|+|+.|+|.+
T Consensus 202 ~~~~rLfVgnL-p~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~k 280 (612)
T TIGR01645 202 KKFNRIYVASV-HPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 280 (612)
T ss_pred cccceEEeecC-CCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEe
Confidence 34579999999 999999999999999999999999986 5899999999999999999999999999999999999
Q ss_pred CccCC
Q 006992 447 YKEKG 451 (622)
Q Consensus 447 Ak~K~ 451 (622)
+..+.
T Consensus 281 Ai~pP 285 (612)
T TIGR01645 281 CVTPP 285 (612)
T ss_pred cCCCc
Confidence 88654
No 16
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=5.4e-12 Score=122.09 Aligned_cols=80 Identities=20% Similarity=0.356 Sum_probs=73.8
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCccC
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~K 450 (622)
...++|||||| +..+++.+|+..|+.||+|.+|.|-. ...|||||+|+++.+|+.|+..|++..|+|.+|.|.....+
T Consensus 8 ~~~~kVYVGnL-~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 8 NGNTKVYVGNL-GSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCCceEEeccC-CCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 34789999999 99999999999999999999999977 57899999999999999999999999999999999988765
Q ss_pred CC
Q 006992 451 GK 452 (622)
Q Consensus 451 ~k 452 (622)
..
T Consensus 86 ~r 87 (195)
T KOG0107|consen 86 PR 87 (195)
T ss_pred cc
Confidence 44
No 17
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=7.3e-12 Score=127.86 Aligned_cols=84 Identities=23% Similarity=0.263 Sum_probs=77.1
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
...+.+++||||+| ..-+||++||+.|+.||+|.+|||-+ -+||+||.|++.|.|..||..||+.+|.|..|+|.|-
T Consensus 159 Qssp~NtsVY~G~I-~~~lte~~mr~~Fs~fG~I~EVRvFk--~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWG 235 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNI-ASGLTEDLMRQTFSPFGPIQEVRVFK--DQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWG 235 (321)
T ss_pred cCCCCCceEEeCCc-CccccHHHHHHhcccCCcceEEEEec--ccceEEEEecchhhHHHHHHHhcCceeCceEEEEecc
Confidence 44578999999999 66899999999999999999999998 6899999999999999999999999999999999998
Q ss_pred ccCCCCc
Q 006992 448 KEKGKVP 454 (622)
Q Consensus 448 k~K~k~~ 454 (622)
++.....
T Consensus 236 Ke~~~~~ 242 (321)
T KOG0148|consen 236 KEGDDGI 242 (321)
T ss_pred ccCCCCC
Confidence 8766544
No 18
>smart00362 RRM_2 RNA recognition motif.
Probab=99.28 E-value=1.8e-11 Score=95.99 Aligned_cols=70 Identities=24% Similarity=0.421 Sum_probs=65.1
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 375 tIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D--ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
+|||++| +..+++++|+++|.+||+|..+++..+ .++|+|||+|.+.++|+.|+..+++..+.|++|.|+
T Consensus 1 ~v~i~~l-~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNL-PPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCC-CCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999 989999999999999999999999885 367999999999999999999999999999999873
No 19
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.28 E-value=1.3e-11 Score=125.10 Aligned_cols=77 Identities=19% Similarity=0.239 Sum_probs=71.0
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCccC
Q 006992 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (622)
Q Consensus 372 ~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D-ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~K 450 (622)
.-.+|||+|| ++.+||++|+++|+.||+|.+|+|+.| +.+|||||+|.+++.|+.|+. |+|..|.+++|.|.++..-
T Consensus 4 ~g~TV~V~NL-S~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 4 GGYTAEVTNL-SPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQY 81 (243)
T ss_pred CceEEEEecC-CCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCccc
Confidence 4579999999 999999999999999999999999997 577999999999999999995 5999999999999988653
No 20
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.28 E-value=1.1e-11 Score=100.85 Aligned_cols=67 Identities=33% Similarity=0.482 Sum_probs=61.1
Q ss_pred EEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 006992 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (622)
Q Consensus 376 IYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~ 443 (622)
|||+|| ++.+++++|+++|+.||.|..|++..+ +.+|+|||+|.++++|++|+...++..|+|+.|+
T Consensus 1 v~i~nl-p~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNL-PPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESS-TTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999 999999999999999999999999986 3589999999999999999999988999999885
No 21
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=5.4e-12 Score=128.81 Aligned_cols=79 Identities=15% Similarity=0.279 Sum_probs=75.3
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 372 ~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
..-.+|||.| ...++.++||+.|.+||+|.+++|++| |+||||||.|-..++|+.||..|||++|.+|.|+-.||
T Consensus 61 ~hfhvfvgdl-s~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 61 QHFHVFVGDL-SPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred cceeEEehhc-chhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 3557999999 899999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ccCC
Q 006992 448 KEKG 451 (622)
Q Consensus 448 k~K~ 451 (622)
..|.
T Consensus 140 TRKp 143 (321)
T KOG0148|consen 140 TRKP 143 (321)
T ss_pred ccCc
Confidence 8776
No 22
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=1.2e-11 Score=132.49 Aligned_cols=87 Identities=21% Similarity=0.284 Sum_probs=77.4
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCce-E--cCeEEEE
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHF-V--CDARVLV 444 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~-I--~GR~I~V 444 (622)
...+|||||-| +..+||.+|+++|++||.|++|+|++| .+||||||+|.+.|.|..|++.||+.. + +..+|.|
T Consensus 122 ~~e~KLFvg~l-sK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGML-SKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhc-cccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 45889999999 999999999999999999999999997 799999999999999999999998743 3 5678999
Q ss_pred EeCccCCCCchHHH
Q 006992 445 KPYKEKGKVPDKYR 458 (622)
Q Consensus 445 k~Ak~K~k~~~~~r 458 (622)
+||.+++.+..+..
T Consensus 201 kFADtqkdk~~~~l 214 (510)
T KOG0144|consen 201 KFADTQKDKDGKRL 214 (510)
T ss_pred EecccCCCchHHHH
Confidence 99998877665443
No 23
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=2.6e-11 Score=125.18 Aligned_cols=79 Identities=14% Similarity=0.327 Sum_probs=74.0
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
...+||||+.| +++++|..|++.|+.||+|+.|+||.| ++||||||+|+++.+...|.+..++..|+|++|.|..
T Consensus 99 DPy~TLFv~RL-nydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 99 DPYKTLFVARL-NYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred Cccceeeeeec-cccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 56899999999 999999999999999999999999997 7999999999999999999999999999999999976
Q ss_pred CccC
Q 006992 447 YKEK 450 (622)
Q Consensus 447 Ak~K 450 (622)
-..+
T Consensus 178 ERgR 181 (335)
T KOG0113|consen 178 ERGR 181 (335)
T ss_pred cccc
Confidence 5543
No 24
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.23 E-value=3.2e-11 Score=115.63 Aligned_cols=76 Identities=22% Similarity=0.346 Sum_probs=72.6
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCc
Q 006992 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (622)
Q Consensus 373 ~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak 448 (622)
.++|||||| ++++|+++|+++|.+||.|..|+|+.| ++||||||+|.++++|..|+..+++..|.|++|.|.++.
T Consensus 115 ~~~l~v~nL-~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNL-PYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCC-CCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 699999999 999999999999999999999999886 689999999999999999999999999999999999976
Q ss_pred c
Q 006992 449 E 449 (622)
Q Consensus 449 ~ 449 (622)
.
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 4
No 25
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.23 E-value=2.4e-11 Score=136.05 Aligned_cols=74 Identities=20% Similarity=0.316 Sum_probs=70.2
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 006992 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (622)
Q Consensus 375 tIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~ 449 (622)
+||||+| +.++||++|+++|++||+|.+|+|++| +++|||||+|.+.++|++|++.+++..|.|+.|+|.|+..
T Consensus 2 sl~VgnL-p~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDL-DPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 6999999 999999999999999999999999986 5789999999999999999999999999999999998753
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.22 E-value=4.1e-11 Score=130.22 Aligned_cols=80 Identities=20% Similarity=0.328 Sum_probs=74.4
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
+..++|||+|| +..+||++|+++|++||.|..|+|+.+ +++|||||+|.+.++|.+|+..||+..|.|+.|.|.+
T Consensus 184 p~~~~l~v~nl-~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~ 262 (457)
T TIGR01622 184 PNFLKLYVGNL-HFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGY 262 (457)
T ss_pred CCCCEEEEcCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEE
Confidence 44789999999 899999999999999999999999975 5799999999999999999999999999999999999
Q ss_pred CccCC
Q 006992 447 YKEKG 451 (622)
Q Consensus 447 Ak~K~ 451 (622)
+....
T Consensus 263 a~~~~ 267 (457)
T TIGR01622 263 AQDST 267 (457)
T ss_pred ccCCC
Confidence 88443
No 27
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.22 E-value=4.8e-11 Score=131.23 Aligned_cols=80 Identities=13% Similarity=0.222 Sum_probs=74.4
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
...++|||+|| ++.+|+++|+++|++||.|..|.|+.+ +++|||||+|.+.++|..|++.||+..|.|+.|.|.+
T Consensus 293 ~~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 293 DSKDRIYIGNL-PLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 45689999999 999999999999999999999999886 5899999999999999999999999999999999999
Q ss_pred CccCC
Q 006992 447 YKEKG 451 (622)
Q Consensus 447 Ak~K~ 451 (622)
+....
T Consensus 372 a~~~~ 376 (509)
T TIGR01642 372 ACVGA 376 (509)
T ss_pred CccCC
Confidence 97543
No 28
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.22 E-value=1.7e-11 Score=121.28 Aligned_cols=80 Identities=21% Similarity=0.224 Sum_probs=74.6
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
....+|-|-|| .+.++.++|+..|++||.|-||.|+.| ++||||||.|.+..+|+.|+++|+|..|+|+.|.|..
T Consensus 11 ~gm~SLkVdNL-TyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 11 EGMTSLKVDNL-TYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred ccceeEEecce-eccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 45678999999 999999999999999999999999998 6999999999999999999999999999999999998
Q ss_pred CccCC
Q 006992 447 YKEKG 451 (622)
Q Consensus 447 Ak~K~ 451 (622)
|+-..
T Consensus 90 arygr 94 (256)
T KOG4207|consen 90 ARYGR 94 (256)
T ss_pred hhcCC
Confidence 87543
No 29
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=4.9e-11 Score=120.46 Aligned_cols=79 Identities=22% Similarity=0.259 Sum_probs=74.9
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 372 ~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
...+|-|.|| +.+++|++|+++|.+||.|..|.|..| .+||||||+|.+.++|.+||+.|||+-.+.-.|+|.|+
T Consensus 188 D~~tvRvtNL-sed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNL-SEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEecC-ccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 4678999999 999999999999999999999999997 69999999999999999999999999999999999999
Q ss_pred ccCC
Q 006992 448 KEKG 451 (622)
Q Consensus 448 k~K~ 451 (622)
+|+.
T Consensus 267 kP~~ 270 (270)
T KOG0122|consen 267 KPSN 270 (270)
T ss_pred CCCC
Confidence 9863
No 30
>smart00360 RRM RNA recognition motif.
Probab=99.18 E-value=7.7e-11 Score=91.89 Aligned_cols=67 Identities=24% Similarity=0.319 Sum_probs=61.7
Q ss_pred EcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 378 LTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 378 VGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
|++| +..+++++|+++|.+||.|..|+|..+ +++|||||+|.+.++|..|++.+++..+.|++|.|.
T Consensus 1 i~~l-~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNL-PPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCC-CcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5788 889999999999999999999999875 358999999999999999999999999999999873
No 31
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.18 E-value=7.5e-11 Score=128.16 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=72.3
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
....++|||+|| +..+|+++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++||. |++..|.|+.|.|.
T Consensus 86 ~~~~~~l~V~nl-p~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 86 ERDDRTVFVLQL-ALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred ccCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 356789999999 999999999999999999999999986 579999999999999999997 69999999999998
Q ss_pred eCccC
Q 006992 446 PYKEK 450 (622)
Q Consensus 446 ~Ak~K 450 (622)
+...+
T Consensus 164 ~~~~~ 168 (457)
T TIGR01622 164 SSQAE 168 (457)
T ss_pred ecchh
Confidence 76543
No 32
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=1.3e-11 Score=120.26 Aligned_cols=79 Identities=18% Similarity=0.234 Sum_probs=73.6
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 372 ~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
.+--|||||| ++++||.||--.|++||+|++|.+++| +++||||+.|++..+.-.|+..|||..|.||.|+|...
T Consensus 34 dsA~Iyiggl-~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGL-PYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCC-cccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 4567999999 999999999999999999999999998 79999999999999999999999999999999999877
Q ss_pred ccCC
Q 006992 448 KEKG 451 (622)
Q Consensus 448 k~K~ 451 (622)
..-.
T Consensus 113 ~~Yk 116 (219)
T KOG0126|consen 113 SNYK 116 (219)
T ss_pred cccc
Confidence 5533
No 33
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.17 E-value=8.6e-11 Score=130.02 Aligned_cols=79 Identities=16% Similarity=0.237 Sum_probs=72.8
Q ss_pred CCCceEEEcCCCCC-CCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 006992 371 PASRQIYLTFPADS-TFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (622)
Q Consensus 371 ~~~rtIYVGnL~~~-~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~ 449 (622)
+..++|||+|| ++ .+|+++|+++|++||.|.+|+|+.+ +||||||+|.+.++|+.|+..||++.|.|++|+|.+++.
T Consensus 273 ~~~~~l~v~nL-~~~~vt~~~L~~lF~~yG~V~~vki~~~-~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 273 GPGSVLMVSGL-HQEKVNCDRLFNLFCVYGNVERVKFMKN-KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCCEEEEeCC-CCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 46789999999 76 6999999999999999999999986 579999999999999999999999999999999999866
Q ss_pred CC
Q 006992 450 KG 451 (622)
Q Consensus 450 K~ 451 (622)
+.
T Consensus 351 ~~ 352 (481)
T TIGR01649 351 QN 352 (481)
T ss_pred cc
Confidence 53
No 34
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.17 E-value=7.5e-11 Score=130.48 Aligned_cols=76 Identities=16% Similarity=0.160 Sum_probs=70.8
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHh--CCCceEcCeEEEEEeCccC
Q 006992 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAK--GNPHFVCDARVLVKPYKEK 450 (622)
Q Consensus 373 ~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~--mng~~I~GR~I~Vk~Ak~K 450 (622)
+++|||++| ++++||++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++. +++..|.|+.|+|.++..+
T Consensus 2 s~vv~V~nL-p~~~te~~L~~~f~~fG~V~~v~i~~--~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 2 SPVVHVRNL-PQDVVEADLVEALIPFGPVSYVMMLP--GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred ccEEEEcCC-CCCCCHHHHHHHHHhcCCeeEEEEEC--CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 689999999 99999999999999999999999998 789999999999999999986 4789999999999999754
Q ss_pred C
Q 006992 451 G 451 (622)
Q Consensus 451 ~ 451 (622)
.
T Consensus 79 ~ 79 (481)
T TIGR01649 79 E 79 (481)
T ss_pred c
Confidence 3
No 35
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.17 E-value=6.6e-11 Score=133.60 Aligned_cols=77 Identities=19% Similarity=0.211 Sum_probs=70.3
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEc-CeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVC-DARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~-GR~I~Vk~ 446 (622)
...++|||++| +++++|++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++||+.||+..|. |+.|.|.+
T Consensus 56 ~~~~~lFVgnL-p~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKI-PRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCC-CCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 45689999999 999999999999999999999999987 79999999999999999999999999885 77777776
Q ss_pred Cc
Q 006992 447 YK 448 (622)
Q Consensus 447 Ak 448 (622)
+.
T Consensus 135 S~ 136 (578)
T TIGR01648 135 SV 136 (578)
T ss_pred cc
Confidence 64
No 36
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.17 E-value=9.1e-11 Score=132.47 Aligned_cols=78 Identities=23% Similarity=0.228 Sum_probs=72.0
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcc--CCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCc
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIY--GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqF--G~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak 448 (622)
...++|||+|| ++.+||++|+++|++| |+|++|+++ |+||||+|.+.++|++|++.||+..|+|+.|+|.+++
T Consensus 231 ~~~k~LfVgNL-~~~~tee~L~~~F~~f~~G~I~rV~~~----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 231 AKVKILYVRNL-MTTTTEEIIEKSFSEFKPGKVERVKKI----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred ccccEEEEeCC-CCCCCHHHHHHHHHhcCCCceEEEEee----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 34689999999 9999999999999999 999999876 4799999999999999999999999999999999998
Q ss_pred cCCCC
Q 006992 449 EKGKV 453 (622)
Q Consensus 449 ~K~k~ 453 (622)
++.+.
T Consensus 306 p~~~~ 310 (578)
T TIGR01648 306 PVDKK 310 (578)
T ss_pred CCCcc
Confidence 86554
No 37
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.13 E-value=3.2e-10 Score=89.32 Aligned_cols=71 Identities=25% Similarity=0.329 Sum_probs=66.1
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccC---CCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQ---KRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 375 tIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~Dk---sRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
+|||++| +..+++++|+++|..||.|..+.+..+. .+|+|||+|.+.+.|..|++.+++..+.|++|.|.+
T Consensus 1 ~i~i~~l-~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNL-PPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCC-CCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999 8899999999999999999999998863 589999999999999999999999999999999864
No 38
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.12 E-value=8e-11 Score=114.70 Aligned_cols=78 Identities=21% Similarity=0.276 Sum_probs=73.5
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
....||||||| +..++++.|+++|-+.|+|.+++|++| ..+|||||+|.++|+|+-|++-||...+.||+|+|..
T Consensus 7 nqd~tiyvgnl-d~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 7 NQDATLYVGNL-DEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred CCCceEEEecC-CHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 34679999999 999999999999999999999999997 5899999999999999999999999999999999998
Q ss_pred Ccc
Q 006992 447 YKE 449 (622)
Q Consensus 447 Ak~ 449 (622)
+..
T Consensus 86 as~ 88 (203)
T KOG0131|consen 86 ASA 88 (203)
T ss_pred ccc
Confidence 873
No 39
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.10 E-value=2.7e-10 Score=89.83 Aligned_cols=56 Identities=23% Similarity=0.304 Sum_probs=51.2
Q ss_pred HHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 391 VSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 391 Lre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
|+++|++||+|.+|.+...+ +++|||+|.+.++|+.|++.||+..++|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998843 599999999999999999999999999999999875
No 40
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.09 E-value=1.1e-10 Score=122.93 Aligned_cols=109 Identities=31% Similarity=0.416 Sum_probs=88.6
Q ss_pred HHhccccccc-Ccc-----cccccccccCCCCCCCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----C
Q 006992 341 LMLNEDMHKF-GRS-----RLERNDFSINGSAGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----Q 410 (622)
Q Consensus 341 ~mL~ed~~~f-Gr~-----R~eR~D~~~~g~~g~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----k 410 (622)
.+|....|++ |+. ...|.+. .........++||||+| +.+++|++++++|.+||.|.++.+++| +
T Consensus 63 ~vl~~~~h~~dgr~ve~k~av~r~~~----~~~~~~~~tkkiFvGG~-~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~ 137 (311)
T KOG4205|consen 63 AVLNARTHKLDGRSVEPKRAVSREDQ----TKVGRHLRTKKIFVGGL-PPDTTEEDFKDYFEQFGKVADVVIMYDKTTSR 137 (311)
T ss_pred eeecccccccCCccccceeccCcccc----cccccccceeEEEecCc-CCCCchHHHhhhhhccceeEeeEEeecccccc
Confidence 3667777877 653 2222221 11122235789999999 999999999999999999999999997 6
Q ss_pred CCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCccCCCCch
Q 006992 411 KRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGKVPD 455 (622)
Q Consensus 411 sRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~K~k~~~ 455 (622)
.||||||+|.+++++++++.. .-|.|+|+.|.|+.|.+|.....
T Consensus 138 ~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk~vevkrA~pk~~~~~ 181 (311)
T KOG4205|consen 138 PRGFGFVTFDSEDSVDKVTLQ-KFHDFNGKKVEVKRAIPKEVMQS 181 (311)
T ss_pred cccceeeEeccccccceeccc-ceeeecCceeeEeeccchhhccc
Confidence 899999999999999999988 89999999999999999887653
No 41
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=2e-10 Score=121.05 Aligned_cols=75 Identities=19% Similarity=0.451 Sum_probs=70.8
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 006992 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (622)
Q Consensus 374 rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~ 449 (622)
++||||.| .+.+.|+.||..|..||+|++|.+-+| ++||||||+|+-+|.|+.|++.||+..+.||.|+|.+-..
T Consensus 114 cRvYVGSI-sfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 114 CRVYVGSI-SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred Hheeeeee-EEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 57999999 999999999999999999999999887 8999999999999999999999999999999999985443
No 42
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.04 E-value=5.1e-10 Score=122.63 Aligned_cols=80 Identities=21% Similarity=0.269 Sum_probs=75.9
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 006992 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (622)
Q Consensus 374 rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~ 449 (622)
+.||||++ +++++|++|.++|+..|.|.++++++| +.|||||++|.+.++++.|++.+|+.++.||+|+|.|+..
T Consensus 19 ~~v~vgni-p~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNI-PYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCC-CCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 89999999 999999999999999999999999997 7999999999999999999999999999999999999877
Q ss_pred CCCCc
Q 006992 450 KGKVP 454 (622)
Q Consensus 450 K~k~~ 454 (622)
.....
T Consensus 98 ~~~~~ 102 (435)
T KOG0108|consen 98 RKNAE 102 (435)
T ss_pred cchhH
Confidence 66544
No 43
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.02 E-value=1.5e-10 Score=121.94 Aligned_cols=81 Identities=28% Similarity=0.394 Sum_probs=75.7
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 372 ~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
...+||||+| +|+++++.|++||++||+|.+|.|++| ++|||+||+|.+++.+.+++.. ..|.|+||.|.+++|
T Consensus 5 ~~~KlfiGgi-sw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGL-SWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCc-CccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceec
Confidence 6789999999 999999999999999999999999998 7999999999999999999988 789999999999999
Q ss_pred ccCCCCc
Q 006992 448 KEKGKVP 454 (622)
Q Consensus 448 k~K~k~~ 454 (622)
.++....
T Consensus 83 v~r~~~~ 89 (311)
T KOG4205|consen 83 VSREDQT 89 (311)
T ss_pred cCccccc
Confidence 9877543
No 44
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.02 E-value=4.5e-10 Score=123.49 Aligned_cols=78 Identities=21% Similarity=0.348 Sum_probs=73.4
Q ss_pred EEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCccCC
Q 006992 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKG 451 (622)
Q Consensus 376 IYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~K~ 451 (622)
+|||+| .+++||++|+.+|+.||.|+.|.++.| ++||||||+|.+.++|++|++.||+.+|-||.|+|.....+-
T Consensus 281 l~vgnL-HfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 281 LYVGNL-HFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred hhhccc-ccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 999999 999999999999999999999999887 799999999999999999999999999999999999887766
Q ss_pred CCc
Q 006992 452 KVP 454 (622)
Q Consensus 452 k~~ 454 (622)
+..
T Consensus 360 ~~~ 362 (549)
T KOG0147|consen 360 DTK 362 (549)
T ss_pred ccc
Confidence 544
No 45
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=5.9e-10 Score=103.61 Aligned_cols=77 Identities=16% Similarity=0.130 Sum_probs=70.7
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccC----CCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQ----KRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~Dk----sRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
.++.||||||| ++.++||.|.++|+++|+|..|-|-.|+ .-||+||+|-..++|+.|+.-+++..++.|.|.|.|
T Consensus 34 r~S~tvyVgNl-SfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 34 RKSCTVYVGNL-SFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred hhcceEEEeee-eeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 56889999999 9999999999999999999999776673 459999999999999999999999999999999987
Q ss_pred Cc
Q 006992 447 YK 448 (622)
Q Consensus 447 Ak 448 (622)
-.
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 53
No 46
>smart00361 RRM_1 RNA recognition motif.
Probab=98.97 E-value=1.6e-09 Score=89.84 Aligned_cols=57 Identities=25% Similarity=0.318 Sum_probs=51.4
Q ss_pred HHHHHHHhh----ccCCceeEE-eecc------CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 388 EEDVSNYFS----IYGPVQDVR-IPYQ------QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 388 EedLre~Fs----qFG~V~dVr-I~~D------ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
+++|+++|+ +||+|.+|. |+.+ ++||||||+|.+.++|.+|+..||+..+.||.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999999 999999995 5443 57999999999999999999999999999999986
No 47
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.96 E-value=1.5e-09 Score=117.01 Aligned_cols=79 Identities=16% Similarity=0.203 Sum_probs=72.4
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceE-cCeEEE
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFV-CDARVL 443 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I-~GR~I~ 443 (622)
..+.-+-||||.| +.++.|++|.-+|++-|+|-++|||.| .+||||||+|.+.+.|++|++.+|+++| .|+.|.
T Consensus 79 ~p~~G~EVfvGkI-PrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ig 157 (506)
T KOG0117|consen 79 PPPRGCEVFVGKI-PRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLG 157 (506)
T ss_pred CCCCCceEEecCC-CccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeE
Confidence 3456678999999 999999999999999999999999997 6999999999999999999999999988 488888
Q ss_pred EEeCc
Q 006992 444 VKPYK 448 (622)
Q Consensus 444 Vk~Ak 448 (622)
|+...
T Consensus 158 vc~Sv 162 (506)
T KOG0117|consen 158 VCVSV 162 (506)
T ss_pred EEEee
Confidence 87764
No 48
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.96 E-value=1.3e-09 Score=117.63 Aligned_cols=81 Identities=20% Similarity=0.262 Sum_probs=74.3
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~ 449 (622)
-.+.+-|||.|| ..++|||.|++.|++||.|+.|+.++| ||||.|.+.++|-+|++.||++.|+|..|.|..|++
T Consensus 256 ms~VKvLYVRNL-~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 256 MSKVKVLYVRNL-MESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred hhheeeeeeecc-chhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCceecCceEEEEecCC
Confidence 356788999999 999999999999999999999998865 999999999999999999999999999999999998
Q ss_pred CCCCch
Q 006992 450 KGKVPD 455 (622)
Q Consensus 450 K~k~~~ 455 (622)
..+...
T Consensus 331 ~~k~k~ 336 (506)
T KOG0117|consen 331 VDKKKK 336 (506)
T ss_pred hhhhcc
Confidence 765543
No 49
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.91 E-value=1.8e-09 Score=111.56 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=71.1
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCccCCCC
Q 006992 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGKV 453 (622)
Q Consensus 374 rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~K~k~ 453 (622)
-+|||||| +..+++.+|+.+|++||+|.+|.|++ .||||..++...++.|+..|++..|+|..|.|+.++.|.+.
T Consensus 3 ~KLFIGNL-p~~~~~~elr~lFe~ygkVlECDIvK----NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~ 77 (346)
T KOG0109|consen 3 VKLFIGNL-PREATEQELRSLFEQYGKVLECDIVK----NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKA 77 (346)
T ss_pred cchhccCC-CcccchHHHHHHHHhhCceEeeeeec----ccceEEeecccccHHHHhhcccceecceEEEEEeccccCCC
Confidence 47999999 99999999999999999999999986 69999999999999999999999999999999999888554
Q ss_pred c
Q 006992 454 P 454 (622)
Q Consensus 454 ~ 454 (622)
.
T Consensus 78 s 78 (346)
T KOG0109|consen 78 S 78 (346)
T ss_pred c
Confidence 4
No 50
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=3.4e-09 Score=108.14 Aligned_cols=77 Identities=21% Similarity=0.230 Sum_probs=72.2
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCc
Q 006992 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (622)
Q Consensus 373 ~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak 448 (622)
--.|||-|| ..+.+|..|+.+|++||.|..|+|++| ++||||||++.+.++|..|+..+||..+.+|.+.|.+..
T Consensus 278 g~ciFvYNL-spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 278 GWCIFVYNL-SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred eeEEEEEec-CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 457999999 889999999999999999999999998 899999999999999999999999999999999998765
Q ss_pred cC
Q 006992 449 EK 450 (622)
Q Consensus 449 ~K 450 (622)
.|
T Consensus 357 nk 358 (360)
T KOG0145|consen 357 NK 358 (360)
T ss_pred CC
Confidence 54
No 51
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.90 E-value=4.9e-09 Score=94.48 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=74.1
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D-ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~ 449 (622)
..++-|||.|| ++++|.++..++|++||.|..|||-.. .-||-|||.|++-.+|++|++.|+|..++++-+.|-++++
T Consensus 16 evnriLyirNL-p~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 16 EVNRILYIRNL-PFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhheeEEEecC-CccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 56788999999 999999999999999999999999665 5799999999999999999999999999999999999876
Q ss_pred CC
Q 006992 450 KG 451 (622)
Q Consensus 450 K~ 451 (622)
.+
T Consensus 95 ~~ 96 (124)
T KOG0114|consen 95 ED 96 (124)
T ss_pred HH
Confidence 44
No 52
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.89 E-value=4.1e-09 Score=116.01 Aligned_cols=78 Identities=18% Similarity=0.282 Sum_probs=66.4
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhcc------------CCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCc
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIY------------GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPH 435 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqF------------G~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~ 435 (622)
......++|||||| ++.+|+++|+++|.+| +.|.+|.+.. .+|||||+|.+.++|..|| +|++.
T Consensus 170 ~~~~~~r~lyVgnL-p~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~--~kg~afVeF~~~e~A~~Al-~l~g~ 245 (509)
T TIGR01642 170 QATRQARRLYVGGI-PPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK--EKNFAFLEFRTVEEATFAM-ALDSI 245 (509)
T ss_pred cCCccccEEEEeCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC--CCCEEEEEeCCHHHHhhhh-cCCCe
Confidence 34567799999999 9999999999999985 3555565555 7899999999999999999 48999
Q ss_pred eEcCeEEEEEeCcc
Q 006992 436 FVCDARVLVKPYKE 449 (622)
Q Consensus 436 ~I~GR~I~Vk~Ak~ 449 (622)
.|.|+.|+|.+...
T Consensus 246 ~~~g~~l~v~r~~~ 259 (509)
T TIGR01642 246 IYSNVFLKIRRPHD 259 (509)
T ss_pred EeeCceeEecCccc
Confidence 99999999976543
No 53
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=3.4e-09 Score=116.54 Aligned_cols=82 Identities=22% Similarity=0.229 Sum_probs=75.7
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 006992 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (622)
Q Consensus 373 ~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~ 449 (622)
.-+|.|.|| +|.+.+.+|+.+|+.||.|.+|.||+. +-.|||||+|.+..+|..|++.+|++.|+||.|-|.||.+
T Consensus 117 k~rLIIRNL-Pf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNL-PFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecC-CcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 557999999 999999999999999999999999983 5569999999999999999999999999999999999998
Q ss_pred CCCCch
Q 006992 450 KGKVPD 455 (622)
Q Consensus 450 K~k~~~ 455 (622)
|.....
T Consensus 196 Kd~ye~ 201 (678)
T KOG0127|consen 196 KDTYED 201 (678)
T ss_pred cccccc
Confidence 876544
No 54
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=3.2e-09 Score=103.98 Aligned_cols=80 Identities=20% Similarity=0.304 Sum_probs=71.9
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D-ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~ 449 (622)
...++|||||| +.++.|.+|.++|.+||.|.+|.+..- ..-.||||+|+++.+|+.||.--++..++|.+|+|.++..
T Consensus 4 r~~~~iyvGNL-P~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 4 RNSRRIYVGNL-PGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cccceEEecCC-CcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 56789999999 999999999999999999999987542 2457999999999999999999999999999999999876
Q ss_pred CC
Q 006992 450 KG 451 (622)
Q Consensus 450 K~ 451 (622)
-.
T Consensus 83 gr 84 (241)
T KOG0105|consen 83 GR 84 (241)
T ss_pred CC
Confidence 54
No 55
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.87 E-value=4e-09 Score=119.59 Aligned_cols=85 Identities=20% Similarity=0.251 Sum_probs=79.3
Q ss_pred CCCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 367 g~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
+...--+||||||+| +..++|.||+..|+.||+|++|.++. .||||||+.....+|.+|+.+|+.+.+.++.|+|.|
T Consensus 415 d~isV~SrTLwvG~i-~k~v~e~dL~~~feefGeiqSi~li~--~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 415 DHISVCSRTLWVGGI-PKNVTEQDLANLFEEFGEIQSIILIP--PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred cceeEeeeeeeeccc-cchhhHHHHHHHHHhcccceeEeecc--CCceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 344456799999999 99999999999999999999999998 999999999999999999999999999999999999
Q ss_pred CccCCCCc
Q 006992 447 YKEKGKVP 454 (622)
Q Consensus 447 Ak~K~k~~ 454 (622)
|..++-+.
T Consensus 492 a~g~G~ks 499 (894)
T KOG0132|consen 492 AVGKGPKS 499 (894)
T ss_pred eccCCcch
Confidence 99988766
No 56
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.84 E-value=4.1e-09 Score=113.40 Aligned_cols=84 Identities=15% Similarity=0.177 Sum_probs=73.0
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCce-Ec--CeEE
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHF-VC--DARV 442 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~-I~--GR~I 442 (622)
+...-|+|||.| +..++|.|||++|++||.|.+|.|++| .+|||+||+|.+.++|.+|+.+++..+ |- ...|
T Consensus 31 d~~~vKlfVgqI-prt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 31 DGSAVKLFVGQI-PRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CchhhhheeccC-CccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 355678999999 999999999999999999999999998 589999999999999999999986544 43 4678
Q ss_pred EEEeCccCCCCc
Q 006992 443 LVKPYKEKGKVP 454 (622)
Q Consensus 443 ~Vk~Ak~K~k~~ 454 (622)
.|++|..+.++.
T Consensus 110 qvk~Ad~E~er~ 121 (510)
T KOG0144|consen 110 QVKYADGERERI 121 (510)
T ss_pred eecccchhhhcc
Confidence 999997766653
No 57
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.84 E-value=1.9e-08 Score=110.76 Aligned_cols=82 Identities=15% Similarity=0.179 Sum_probs=74.3
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhC-----CC-ceEcCeEE
Q 006992 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKG-----NP-HFVCDARV 442 (622)
Q Consensus 373 ~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~m-----ng-~~I~GR~I 442 (622)
-++|||.|| ++++||++|.++|++||+|..+.|+.+ +++|.|||.|.+..+++.||... .+ ..|+||.|
T Consensus 292 ~~tVFvRNL-~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~L 370 (678)
T KOG0127|consen 292 GKTVFVRNL-PFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLL 370 (678)
T ss_pred cceEEEecC-CccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEE
Confidence 389999999 999999999999999999999999885 79999999999999999999875 23 78999999
Q ss_pred EEEeCccCCCCch
Q 006992 443 LVKPYKEKGKVPD 455 (622)
Q Consensus 443 ~Vk~Ak~K~k~~~ 455 (622)
.|..|..+....+
T Consensus 371 kv~~Av~RkeA~d 383 (678)
T KOG0127|consen 371 KVTLAVTRKEAAD 383 (678)
T ss_pred eeeeccchHHHHH
Confidence 9999998876553
No 58
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.83 E-value=9.3e-09 Score=105.02 Aligned_cols=82 Identities=12% Similarity=0.296 Sum_probs=76.1
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
.....+.|.|.-| +..+|+++||.+|+..|+|++|++++| ++-|||||.|.++++|++|+..+||-.+..+.|+|
T Consensus 37 t~~skTNLIvNYL-PQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKV 115 (360)
T KOG0145|consen 37 TDESKTNLIVNYL-PQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKV 115 (360)
T ss_pred cCcccceeeeeec-ccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEE
Confidence 3456677889999 999999999999999999999999998 68899999999999999999999999999999999
Q ss_pred EeCccCC
Q 006992 445 KPYKEKG 451 (622)
Q Consensus 445 k~Ak~K~ 451 (622)
.+|++..
T Consensus 116 SyARPSs 122 (360)
T KOG0145|consen 116 SYARPSS 122 (360)
T ss_pred EeccCCh
Confidence 9999854
No 59
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.79 E-value=7.5e-09 Score=101.13 Aligned_cols=108 Identities=16% Similarity=0.289 Sum_probs=85.5
Q ss_pred HHhcccccccCcc-cccccccccCCCCCCCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeE-Eeecc----CCCce
Q 006992 341 LMLNEDMHKFGRS-RLERNDFSINGSAGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDV-RIPYQ----QKRMF 414 (622)
Q Consensus 341 ~mL~ed~~~fGr~-R~eR~D~~~~g~~g~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dV-rI~~D----ksRGF 414 (622)
+-+.+-.+.|||+ |+.+.. ..+.......+|||||| +..++|..|.+.|+.||.|.+. +|++| .++||
T Consensus 68 ikiln~VkLYgrpIrv~kas-----~~~~nl~vganlfvgNL-d~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~ 141 (203)
T KOG0131|consen 68 IKILNMVKLYGRPIRVNKAS-----AHQKNLDVGANLFVGNL-DPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGF 141 (203)
T ss_pred HHHHHHHHhcCceeEEEecc-----ccccccccccccccccc-CcchhHHHHHHHHHhccccccCCcccccccCCCCCCC
Confidence 3334466677875 333322 12233455578999999 7799999999999999999864 55654 78999
Q ss_pred EEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCccCCCCc
Q 006992 415 GFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGKVP 454 (622)
Q Consensus 415 GFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~K~k~~ 454 (622)
|||.|.+.|.+.+|+..||++.+++|+|.|..+..+....
T Consensus 142 g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 142 GFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred eEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 9999999999999999999999999999999998776654
No 60
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=1.3e-08 Score=109.95 Aligned_cols=77 Identities=17% Similarity=0.347 Sum_probs=72.7
Q ss_pred EEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCccCCCC
Q 006992 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGKV 453 (622)
Q Consensus 376 IYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D--ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~K~k~ 453 (622)
|||.|| +..+|..+|.+.|+.||+|.+|+|+.| -+||| ||.|+++++|++|++.||+..+.|+.|.|..+..+..+
T Consensus 79 ~~i~nl-~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 79 VFIKNL-DESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred eeecCC-CcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 999999 999999999999999999999999997 48999 99999999999999999999999999999999877654
Q ss_pred c
Q 006992 454 P 454 (622)
Q Consensus 454 ~ 454 (622)
.
T Consensus 157 ~ 157 (369)
T KOG0123|consen 157 E 157 (369)
T ss_pred c
Confidence 4
No 61
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.72 E-value=1.5e-08 Score=95.05 Aligned_cols=78 Identities=18% Similarity=0.230 Sum_probs=72.2
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 006992 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (622)
Q Consensus 374 rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~ 449 (622)
--|||+++ ....||++|.+.|..||+|..|.+-.| -.||||.|+|.+.+.|++|++.||+..|.|..|.|.|+--
T Consensus 73 wIi~Vtgv-HeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 73 WIIFVTGV-HEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred EEEEEecc-CcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 35999999 889999999999999999999998877 3799999999999999999999999999999999999976
Q ss_pred CCC
Q 006992 450 KGK 452 (622)
Q Consensus 450 K~k 452 (622)
+..
T Consensus 152 ~gp 154 (170)
T KOG0130|consen 152 KGP 154 (170)
T ss_pred cCC
Confidence 554
No 62
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.71 E-value=2.6e-08 Score=102.16 Aligned_cols=84 Identities=13% Similarity=0.217 Sum_probs=72.5
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCce-Ec--CeEEEE
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHF-VC--DARVLV 444 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~-I~--GR~I~V 444 (622)
...||||||-| ...-.|+|++++|..||+|++|.+.++ .+||||||+|.+..+|+.||..+++.. +- ...+.|
T Consensus 17 ~~drklfvgml-~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 17 GDDRKLFVGML-NKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccchhhhhhhh-cccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 46899999999 889999999999999999999999884 799999999999999999999987643 33 356889
Q ss_pred EeCccCCCCch
Q 006992 445 KPYKEKGKVPD 455 (622)
Q Consensus 445 k~Ak~K~k~~~ 455 (622)
+++...+++..
T Consensus 96 K~ADTdkER~l 106 (371)
T KOG0146|consen 96 KFADTDKERTL 106 (371)
T ss_pred EeccchHHHHH
Confidence 99887766653
No 63
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.68 E-value=3.7e-08 Score=106.22 Aligned_cols=80 Identities=25% Similarity=0.304 Sum_probs=72.6
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhh-ccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFS-IYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~Fs-qFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~ 443 (622)
......|.+||+|| ++++...+|+++|. +.|+|+.|.+..| |.||||.|+|+++|.+++|++.||.+.+.||.|.
T Consensus 39 n~~~r~R~vfItNI-pyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~ 117 (608)
T KOG4212|consen 39 NVAARDRSVFITNI-PYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELV 117 (608)
T ss_pred CcccccceEEEecC-cchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEE
Confidence 33455667999999 99999999999997 5799999999998 8999999999999999999999999999999999
Q ss_pred EEeCc
Q 006992 444 VKPYK 448 (622)
Q Consensus 444 Vk~Ak 448 (622)
|+.-.
T Consensus 118 vKEd~ 122 (608)
T KOG4212|consen 118 VKEDH 122 (608)
T ss_pred EeccC
Confidence 98544
No 64
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.62 E-value=7.6e-08 Score=96.69 Aligned_cols=82 Identities=15% Similarity=0.226 Sum_probs=74.9
Q ss_pred CceEEEcCCCCCCCCHHHHHH----HhhccCCceeEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 373 SRQIYLTFPADSTFREEDVSN----YFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 373 ~rtIYVGnL~~~~~TEedLre----~FsqFG~V~dVrI~~D-ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
+.||||-|| ...+..++|++ +|++||+|.+|....- +.||=|||.|++.+.|-.|+.+|+|..+.|+.++|.+|
T Consensus 9 n~TlYInnL-nekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 9 NGTLYINNL-NEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred CceEeehhc-cccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 449999999 88999999998 9999999999987653 78999999999999999999999999999999999999
Q ss_pred ccCCCCch
Q 006992 448 KEKGKVPD 455 (622)
Q Consensus 448 k~K~k~~~ 455 (622)
+.+.....
T Consensus 88 ~s~sdii~ 95 (221)
T KOG4206|consen 88 KSDSDIIA 95 (221)
T ss_pred cCccchhh
Confidence 98876654
No 65
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.60 E-value=3.7e-08 Score=101.02 Aligned_cols=82 Identities=18% Similarity=0.354 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
+.-++|||-.| +.++++.+|...|-.||.|.+.+|..| ++|+||||.|+++.+|+.||..|||..|.-+|++|..
T Consensus 283 PeGCNlFIYHL-PQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 283 PEGCNLFIYHL-PQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCcceEEEEeC-chhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 45689999999 999999999999999999999999776 6999999999999999999999999999999999998
Q ss_pred CccCCCC
Q 006992 447 YKEKGKV 453 (622)
Q Consensus 447 Ak~K~k~ 453 (622)
.++|..+
T Consensus 362 KRPkdan 368 (371)
T KOG0146|consen 362 KRPKDAN 368 (371)
T ss_pred cCccccC
Confidence 8877654
No 66
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.4e-07 Score=99.72 Aligned_cols=82 Identities=17% Similarity=0.278 Sum_probs=74.1
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccC----CCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQ----KRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~Dk----sRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~ 443 (622)
...+...-|||.-| ...+|.+||.-+|+.||+|.+|.|++|+ +-.||||+|++.+++++|.=+|+...|+.|+|.
T Consensus 234 d~~PPeNVLFVCKL-NPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 234 DVKPPENVLFVCKL-NPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred ccCCCcceEEEEec-CCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 34466788999999 8889999999999999999999999983 567999999999999999999999999999999
Q ss_pred EEeCccC
Q 006992 444 VKPYKEK 450 (622)
Q Consensus 444 Vk~Ak~K 450 (622)
|.+.+.-
T Consensus 313 VDFSQSV 319 (479)
T KOG0415|consen 313 VDFSQSV 319 (479)
T ss_pred eehhhhh
Confidence 9887653
No 67
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.51 E-value=1.1e-07 Score=98.44 Aligned_cols=83 Identities=18% Similarity=0.201 Sum_probs=75.1
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~ 449 (622)
+..++||+|||| ...++..+|++.|.+||+|.+|.|++ +|+||.|+..++|..|+..|++.++.|+++.|.....
T Consensus 75 sk~stkl~vgNi-s~tctn~ElRa~fe~ygpviecdivk----dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 75 SKASTKLHVGNI-SPTCTNQELRAKFEKYGPVIECDIVK----DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred CCCccccccCCC-CccccCHHHhhhhcccCCceeeeeec----ceeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 457889999999 88999999999999999999999986 7999999999999999999999999999999999887
Q ss_pred CCCCchHH
Q 006992 450 KGKVPDKY 457 (622)
Q Consensus 450 K~k~~~~~ 457 (622)
+-....-|
T Consensus 150 rlrtapgm 157 (346)
T KOG0109|consen 150 RLRTAPGM 157 (346)
T ss_pred ccccCCCC
Confidence 66544333
No 68
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.40 E-value=3.9e-07 Score=100.87 Aligned_cols=77 Identities=23% Similarity=0.323 Sum_probs=71.3
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 372 ~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
..++|||.+| ...+...||+.+|++||+|+-.+|++. --|+|||||+.+.++|-++|+.|+..+|.||.|.|..+
T Consensus 404 ~gRNlWVSGL-SstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 404 LGRNLWVSGL-SSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred cccceeeecc-ccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 4578999999 888888999999999999999999986 36899999999999999999999999999999999998
Q ss_pred cc
Q 006992 448 KE 449 (622)
Q Consensus 448 k~ 449 (622)
+.
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 75
No 69
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.40 E-value=3.6e-07 Score=96.99 Aligned_cols=79 Identities=14% Similarity=0.242 Sum_probs=73.4
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
..+..+|||..+ ..+++|+||+..|+.||+|..|.+-++ .+||||||+|.+..+...|+..||-..+.|.-++|.
T Consensus 207 Ak~fnRiYVaSv-HpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVG 285 (544)
T KOG0124|consen 207 AKKFNRIYVASV-HPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVG 285 (544)
T ss_pred HHhhheEEeeec-CCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecc
Confidence 356789999999 889999999999999999999999876 699999999999999999999999999999999998
Q ss_pred eCcc
Q 006992 446 PYKE 449 (622)
Q Consensus 446 ~Ak~ 449 (622)
.+..
T Consensus 286 k~vT 289 (544)
T KOG0124|consen 286 KCVT 289 (544)
T ss_pred cccC
Confidence 8754
No 70
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=4.6e-07 Score=98.01 Aligned_cols=89 Identities=21% Similarity=0.391 Sum_probs=81.4
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
......+||.++ ..+++++.|.++|.+||+|..+.|+.+ +++|||||.|.++++|..|+..|++..+.+..+.|.+
T Consensus 164 ~~~~t~v~vk~~-~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~ 242 (369)
T KOG0123|consen 164 KKRFTNVYVKNL-EEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGR 242 (369)
T ss_pred hhhhhhhheecc-ccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecc
Confidence 356678999999 889999999999999999999999986 6899999999999999999999999999999999999
Q ss_pred CccCCCCchHHHH
Q 006992 447 YKEKGKVPDKYRK 459 (622)
Q Consensus 447 Ak~K~k~~~~~r~ 459 (622)
++.+.+.....++
T Consensus 243 aqkk~e~~~~l~~ 255 (369)
T KOG0123|consen 243 AQKKSEREAELKR 255 (369)
T ss_pred cccchhhHHHHhh
Confidence 9997777766664
No 71
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.36 E-value=8e-07 Score=100.72 Aligned_cols=75 Identities=21% Similarity=0.308 Sum_probs=69.1
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc-------CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-------QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 374 rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D-------ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
++|||.|| .+++|.++|..+|...|.|.+|.|..- .+.|||||+|.+.++|+.|+..|+|+.|+|+.|.|+.
T Consensus 516 t~lfvkNl-nf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 516 TKLFVKNL-NFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred hhhhhhcC-CcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 34999999 999999999999999999999999762 1449999999999999999999999999999999999
Q ss_pred Ccc
Q 006992 447 YKE 449 (622)
Q Consensus 447 Ak~ 449 (622)
+..
T Consensus 595 S~~ 597 (725)
T KOG0110|consen 595 SEN 597 (725)
T ss_pred ccC
Confidence 883
No 72
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.35 E-value=8e-07 Score=100.59 Aligned_cols=82 Identities=20% Similarity=0.298 Sum_probs=75.6
Q ss_pred CCCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc-------CCCceEEEEECCHHHHHHHHHhCCCceEcC
Q 006992 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-------QKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (622)
Q Consensus 367 g~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D-------ksRGFGFVtF~~~e~A~~Al~~mng~~I~G 439 (622)
...++.++.+||||| ...++|+.|-..|+.||+|..|+|++- +.+-||||.|-+..+|++|++.|++.++.+
T Consensus 168 DdgDP~TTNlyv~Nl-npsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~ 246 (877)
T KOG0151|consen 168 DDGDPQTTNLYVGNL-NPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME 246 (877)
T ss_pred CCCCCcccceeeecC-CccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee
Confidence 344688999999999 889999999999999999999999872 678999999999999999999999999999
Q ss_pred eEEEEEeCcc
Q 006992 440 ARVLVKPYKE 449 (622)
Q Consensus 440 R~I~Vk~Ak~ 449 (622)
+.+++.|.+.
T Consensus 247 ~e~K~gWgk~ 256 (877)
T KOG0151|consen 247 YEMKLGWGKA 256 (877)
T ss_pred eeeeeccccc
Confidence 9999999954
No 73
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.34 E-value=3.4e-07 Score=103.64 Aligned_cols=80 Identities=21% Similarity=0.380 Sum_probs=73.9
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 372 ~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
..++|.|.|| ++..+-.+|+++|..||.|.+|+|+.- -+||||||+|-++.+|.+|++.+....+.||++.+.||
T Consensus 612 ~~tKIlVRNi-pFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 612 KGTKILVRNI-PFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred ccceeeeecc-chHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 3568999999 999999999999999999999999872 47999999999999999999999999999999999999
Q ss_pred ccCCC
Q 006992 448 KEKGK 452 (622)
Q Consensus 448 k~K~k 452 (622)
....-
T Consensus 691 ~~d~~ 695 (725)
T KOG0110|consen 691 KSDNT 695 (725)
T ss_pred ccchH
Confidence 87655
No 74
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.33 E-value=1.1e-06 Score=87.66 Aligned_cols=78 Identities=21% Similarity=0.340 Sum_probs=69.8
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhcc-CCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 372 ASRQIYLTFPADSTFREEDVSNYFSIY-GPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 372 ~~rtIYVGnL~~~~~TEedLre~FsqF-G~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
...-+||+.+ +.-+.|..+..+|.+| |.|..+|+-+. .+||||||+|++++.|+-|.+.||+..+.|+.|.|..
T Consensus 48 ~~g~~~~~~~-p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 48 IEGVVYVDHI-PHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred Cccceeeccc-ccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 3456899999 8899999999999999 78888888664 6999999999999999999999999999999999988
Q ss_pred CccC
Q 006992 447 YKEK 450 (622)
Q Consensus 447 Ak~K 450 (622)
-.+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 7666
No 75
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.29 E-value=6.6e-07 Score=91.50 Aligned_cols=89 Identities=15% Similarity=0.241 Sum_probs=78.7
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
.....+||+|.| ..+++.+.|.+.|.+|-.-...++++| +++|||||.|.+.+++..|+.+|+|.+++.|.|+..
T Consensus 187 ~~~DfRIfcgdl-gNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 187 DEDDFRIFCGDL-GNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred ccccceeecccc-cccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 356678999999 889999999999999999999999987 799999999999999999999999999999999988
Q ss_pred eCccCCCCchHHHH
Q 006992 446 PYKEKGKVPDKYRK 459 (622)
Q Consensus 446 ~Ak~K~k~~~~~r~ 459 (622)
....|.++.+..++
T Consensus 266 kS~wkeRn~dvv~k 279 (290)
T KOG0226|consen 266 KSEWKERNLDVVKK 279 (290)
T ss_pred hhhHHhhhhHHHhH
Confidence 77776665554443
No 76
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.25 E-value=1.6e-06 Score=93.88 Aligned_cols=78 Identities=18% Similarity=0.075 Sum_probs=70.5
Q ss_pred CCCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 367 g~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D-ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
....++.++|||.|| ++++|.+.|++-|..||.|..+.|+.. ++|| .|.|.++++|++|+..|++..++||.|.|.
T Consensus 530 ~gaarKa~qIiirNl-P~dfTWqmlrDKfre~G~v~yadime~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~ 606 (608)
T KOG4212|consen 530 VGAARKACQIIIRNL-PFDFTWQMLRDKFREIGHVLYADIMENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVT 606 (608)
T ss_pred ccccccccEEEEecC-CccccHHHHHHHHHhccceehhhhhccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeee
Confidence 345578889999999 999999999999999999999999763 6776 999999999999999999999999999997
Q ss_pred eC
Q 006992 446 PY 447 (622)
Q Consensus 446 ~A 447 (622)
++
T Consensus 607 y~ 608 (608)
T KOG4212|consen 607 YF 608 (608)
T ss_pred eC
Confidence 63
No 77
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.22 E-value=2e-06 Score=94.32 Aligned_cols=75 Identities=17% Similarity=0.334 Sum_probs=67.0
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeec----cCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCc
Q 006992 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY----QQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (622)
Q Consensus 373 ~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~----DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak 448 (622)
..+|||++| +.++++.+|+++|.+||+|+..+|.. ++..+||||+|.+.++++.|+.+ +...|+++++.|+.-+
T Consensus 288 ~~~i~V~nl-P~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNL-PPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred ccceEeecC-CCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 345999999 99999999999999999999988865 34559999999999999999999 7999999999998665
Q ss_pred c
Q 006992 449 E 449 (622)
Q Consensus 449 ~ 449 (622)
.
T Consensus 366 ~ 366 (419)
T KOG0116|consen 366 P 366 (419)
T ss_pred c
Confidence 5
No 78
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.21 E-value=7.3e-07 Score=89.61 Aligned_cols=82 Identities=21% Similarity=0.203 Sum_probs=73.3
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
...+..+||||+++ ...++|+-|.++|-+-|+|.+|.|+.+ +.| ||||.|.++-.+..|++.||+..+.++.+.|
T Consensus 4 aaae~drtl~v~n~-~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~ 81 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNM-YSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR 81 (267)
T ss_pred CCcchhhHHHHHhh-hhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhc
Confidence 34467899999999 999999999999999999999999885 345 9999999999999999999999999999999
Q ss_pred EeCccCC
Q 006992 445 KPYKEKG 451 (622)
Q Consensus 445 k~Ak~K~ 451 (622)
++-....
T Consensus 82 ~~r~G~s 88 (267)
T KOG4454|consen 82 TLRCGNS 88 (267)
T ss_pred ccccCCC
Confidence 8765443
No 79
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.16 E-value=1.6e-06 Score=87.44 Aligned_cols=71 Identities=25% Similarity=0.448 Sum_probs=66.4
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 006992 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (622)
Q Consensus 374 rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~ 449 (622)
.++|||+| ++...+.+|.++|..||.|.+|.+.. |||||.|.+..+|+.|+..+++.+|+|.++.|.+++.
T Consensus 2 ~rv~vg~~-~~~~~~~d~E~~f~~yg~~~d~~mk~----gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRL-PYRARERDVERFFKGYGKIPDADMKN----GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred Cceeeccc-CCccchhHHHHHHhhccccccceeec----ccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 46899999 99999999999999999999998765 8999999999999999999999999999988888875
No 80
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.04 E-value=1.3e-05 Score=82.27 Aligned_cols=80 Identities=13% Similarity=0.138 Sum_probs=73.0
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
......+|+|.|| ++.++++||+++|.+||++..|-|-+| ++.|.|=|+|...++|..|++.+++.-++|+.+.+.
T Consensus 79 ~~~~~~~v~v~NL-~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNL-PYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecC-CcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 4456689999999 999999999999999999999999887 688999999999999999999999999999999887
Q ss_pred eCcc
Q 006992 446 PYKE 449 (622)
Q Consensus 446 ~Ak~ 449 (622)
....
T Consensus 158 ~i~~ 161 (243)
T KOG0533|consen 158 IISS 161 (243)
T ss_pred EecC
Confidence 6654
No 81
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.95 E-value=1.1e-05 Score=82.39 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=72.2
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
...+.+|||++ ++.+|-+++..+|..||.|..|.|++| +.|||+||.|.+.+.++.|+. |++..|.|+.+.|.+
T Consensus 99 ~d~~sv~v~nv-d~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 99 VDAPSVWVGNV-DFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred cCCceEEEecc-ccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 55788999999 999988889999999999999999987 478999999999999999999 899999999999998
Q ss_pred CccC
Q 006992 447 YKEK 450 (622)
Q Consensus 447 Ak~K 450 (622)
.+.+
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 8766
No 82
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=97.76 E-value=2.3e-05 Score=85.95 Aligned_cols=83 Identities=12% Similarity=0.130 Sum_probs=64.9
Q ss_pred CCCCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 366 AGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 366 ~g~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
.|-.....+.+-+.-.+..--|-++|..+|.+||+|.+|.|-+ +---|.|||.+..+|-.|... .+..|+||.|+|.
T Consensus 365 ~g~~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~--~~~~a~vTF~t~aeag~a~~s-~~avlnnr~iKl~ 441 (526)
T KOG2135|consen 365 PGHAVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY--SSLHAVVTFKTRAEAGEAYAS-HGAVLNNRFIKLF 441 (526)
T ss_pred CcchhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccC--chhhheeeeeccccccchhcc-ccceecCceeEEE
Confidence 3455555666655555223346789999999999999998876 334699999999999888777 8999999999999
Q ss_pred eCccCC
Q 006992 446 PYKEKG 451 (622)
Q Consensus 446 ~Ak~K~ 451 (622)
|..+..
T Consensus 442 whnps~ 447 (526)
T KOG2135|consen 442 WHNPSP 447 (526)
T ss_pred EecCCc
Confidence 987744
No 83
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.75 E-value=1.8e-05 Score=88.04 Aligned_cols=74 Identities=16% Similarity=0.199 Sum_probs=67.8
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~ 443 (622)
..+...++|+|-+| +..+++++|+++|+.||+|..|+.-. .++|..||+|-|-.+|++|++++++..|.|++|+
T Consensus 70 ~~~~~~~~L~v~nl-~~~Vsn~~L~~~f~~yGeir~ir~t~-~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNL-PRSVSNDTLLRIFGAYGEIREIRETP-NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cccCccceEEEEec-CCcCCHHHHHHHHHhhcchhhhhccc-ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34567899999999 99999999999999999999988744 3789999999999999999999999999999998
No 84
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.74 E-value=1.2e-05 Score=89.28 Aligned_cols=77 Identities=22% Similarity=0.340 Sum_probs=70.1
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
....||+|+-.| .-.+++.+|.++|+.+|+|.+|+|+.| ++||.|||+|.|.+.+..|+.. .|+-+.|..|.|.
T Consensus 176 ERd~Rtvf~~ql-a~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaL-sGqrllg~pv~vq 253 (549)
T KOG0147|consen 176 ERDQRTVFCMQL-ARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIAL-SGQRLLGVPVIVQ 253 (549)
T ss_pred HHhHHHHHHHHH-hhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhh-cCCcccCceeEec
Confidence 356789999999 789999999999999999999999998 6999999999999999999965 9999999999997
Q ss_pred eCc
Q 006992 446 PYK 448 (622)
Q Consensus 446 ~Ak 448 (622)
...
T Consensus 254 ~sE 256 (549)
T KOG0147|consen 254 LSE 256 (549)
T ss_pred ccH
Confidence 653
No 85
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.54 E-value=0.00019 Score=76.40 Aligned_cols=77 Identities=10% Similarity=0.153 Sum_probs=68.9
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCcee--------EEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcC
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQD--------VRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~d--------VrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~G 439 (622)
..++.|||.|| |.++|-+++.++|++||-|.. |++-.+ +-||=|.++|-..|+|+.|+..|++..|.|
T Consensus 132 ~~Nt~VYVsgL-P~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGL-PLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCC-CCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 45666999999 999999999999999998864 455444 689999999999999999999999999999
Q ss_pred eEEEEEeCc
Q 006992 440 ARVLVKPYK 448 (622)
Q Consensus 440 R~I~Vk~Ak 448 (622)
+.|+|.+|+
T Consensus 211 ~~~rVerAk 219 (382)
T KOG1548|consen 211 KKLRVERAK 219 (382)
T ss_pred cEEEEehhh
Confidence 999999996
No 86
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.49 E-value=0.00035 Score=70.95 Aligned_cols=83 Identities=13% Similarity=0.155 Sum_probs=70.1
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeec-cC----CCceEEEEECCHHHHHHHHHhCCCceEc---CeEE
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY-QQ----KRMFGFVTFVYPETVKIILAKGNPHFVC---DARV 442 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~-Dk----sRGFGFVtF~~~e~A~~Al~~mng~~I~---GR~I 442 (622)
...|||||.+| +.++...+|..+|..|---+.+-|-+ ++ .+-+|||+|.+...|..|+..+||..++ +..+
T Consensus 32 ~~VRTLFVSGL-P~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 32 GAVRTLFVSGL-PNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred cccceeeeccC-CcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 34799999999 99999999999999997666665533 22 4579999999999999999999999984 8889
Q ss_pred EEEeCccCCCCc
Q 006992 443 LVKPYKEKGKVP 454 (622)
Q Consensus 443 ~Vk~Ak~K~k~~ 454 (622)
++..|+...+..
T Consensus 111 hiElAKSNtK~k 122 (284)
T KOG1457|consen 111 HIELAKSNTKRK 122 (284)
T ss_pred EeeehhcCcccc
Confidence 999998766654
No 87
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.38 E-value=3.5e-05 Score=53.51 Aligned_cols=23 Identities=48% Similarity=1.128 Sum_probs=18.2
Q ss_pred ccccccccc-cccCCCCCCccCCC
Q 006992 231 WRPCLYFAR-GYCKNGSSCRFVHG 253 (622)
Q Consensus 231 ~kpC~YFak-G~CK~G~sCry~Hg 253 (622)
-++|.+|.+ |.|++|++|+|.|+
T Consensus 3 ~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 3 TKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp SSB-HHHHHTS--TTGGGSSSBSS
T ss_pred cccChhhccCCccCCCCCcCccCC
Confidence 479999998 99999999999995
No 88
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.32 E-value=0.00058 Score=74.14 Aligned_cols=76 Identities=14% Similarity=0.259 Sum_probs=70.7
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 006992 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (622)
Q Consensus 373 ~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~ 449 (622)
+..|-|.+|....+|++.|-.+|+-||.|.+|+|.+.+ +--|.|.|.+...|+.|++.++|+.+.|++|+|...+-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 77899999988899999999999999999999999854 47899999999999999999999999999999998864
No 89
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.11 E-value=0.0016 Score=72.19 Aligned_cols=79 Identities=16% Similarity=0.187 Sum_probs=68.6
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCc
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D--ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak 448 (622)
....-|=+.+| +|.+|++||.+||+-+ .|+++.+++. |..|=|||+|.++|++++|+++ +...+..|=|.|..+.
T Consensus 8 ~~~~~vr~rGL-Pwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 8 STAFEVRLRGL-PWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAG 84 (510)
T ss_pred CcceEEEecCC-CccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccC
Confidence 34556778999 9999999999999999 5888888874 7889999999999999999999 8999999999998876
Q ss_pred cCCC
Q 006992 449 EKGK 452 (622)
Q Consensus 449 ~K~k 452 (622)
.+.-
T Consensus 85 ~~e~ 88 (510)
T KOG4211|consen 85 GAEA 88 (510)
T ss_pred Cccc
Confidence 5443
No 90
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.07 E-value=0.0022 Score=57.69 Aligned_cols=78 Identities=13% Similarity=0.122 Sum_probs=64.6
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhcc--CCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEc----CeEEE
Q 006992 374 RQIYLTFPADSTFREEDVSNYFSIY--GPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVC----DARVL 443 (622)
Q Consensus 374 rtIYVGnL~~~~~TEedLre~FsqF--G~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~----GR~I~ 443 (622)
+||-|.|| |...|.++|.+++... |...-+.+|.| ...|||||.|.+++.|..-.+.++|+.+. .+.+.
T Consensus 2 TTvMirNI-Pn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNI-PNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecC-CCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 68999999 8899999999888763 67777788887 47899999999999999999999888774 56678
Q ss_pred EEeCccCCC
Q 006992 444 VKPYKEKGK 452 (622)
Q Consensus 444 Vk~Ak~K~k 452 (622)
|.+|+-.++
T Consensus 81 i~yAriQG~ 89 (97)
T PF04059_consen 81 ISYARIQGK 89 (97)
T ss_pred EehhHhhCH
Confidence 888765544
No 91
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.03 E-value=0.00042 Score=70.28 Aligned_cols=70 Identities=23% Similarity=0.237 Sum_probs=62.6
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
.+...+.|.++ ...+.+.+|.++|..||++..+.+ .++++||+|...++|..|++.+++..+.|+.|.+.
T Consensus 97 ~s~~r~~~~~~-~~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 97 RTHFRLIVRNL-SLRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred cccceeeeccc-hhhhhHHHHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 45677889999 888899999999999999965544 47899999999999999999999999999999993
No 92
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.99 E-value=0.0004 Score=73.10 Aligned_cols=80 Identities=19% Similarity=0.331 Sum_probs=72.1
Q ss_pred CCceEE-EcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 372 ASRQIY-LTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 372 ~~rtIY-VGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
...++| |+++ ++.+++++|+.+|..+|.|..|+++.+ .++|||||.|.+......++.. ..+.+.|+.+.+..
T Consensus 183 ~s~~~~~~~~~-~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 183 PSDTIFFVGEL-DFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred ccccceeeccc-ccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 355677 9999 999999999999999999999999885 6899999999999999999988 88999999999998
Q ss_pred CccCCCC
Q 006992 447 YKEKGKV 453 (622)
Q Consensus 447 Ak~K~k~ 453 (622)
..++.+.
T Consensus 261 ~~~~~~~ 267 (285)
T KOG4210|consen 261 DEPRPKS 267 (285)
T ss_pred CCCCccc
Confidence 8777655
No 93
>smart00356 ZnF_C3H1 zinc finger.
Probab=96.93 E-value=0.00043 Score=46.97 Aligned_cols=22 Identities=45% Similarity=1.216 Sum_probs=20.5
Q ss_pred cccccccccccCCCCCCccCCC
Q 006992 232 RPCLYFARGYCKNGSSCRFVHG 253 (622)
Q Consensus 232 kpC~YFakG~CK~G~sCry~Hg 253 (622)
.+|.+|.+|.|+.|.+|+|.|.
T Consensus 5 ~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 5 ELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CcCcCccCCCCCCCCCcCCCCc
Confidence 4899999999999999999994
No 94
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.91 E-value=0.002 Score=51.54 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=42.5
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHH
Q 006992 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIIL 429 (622)
Q Consensus 374 rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al 429 (622)
+.|-|.|. +.. ..+.+.++|.+||+|.++.+.. .+-+.+|+|.++.+|++||
T Consensus 2 ~wI~V~Gf-~~~-~~~~vl~~F~~fGeI~~~~~~~--~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGF-PPD-LAEEVLEHFASFGEIVDIYVPE--STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeE-Cch-HHHHHHHHHHhcCCEEEEEcCC--CCcEEEEEECCHHHHHhhC
Confidence 56778787 433 3466778999999999999884 5779999999999999985
No 95
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.82 E-value=0.0022 Score=68.35 Aligned_cols=80 Identities=13% Similarity=0.156 Sum_probs=62.1
Q ss_pred CCCCceEEEcCCCCCCCCHH---HH--HHHhhccCCceeEEeecc-----CCCc-e-EEEEECCHHHHHHHHHhCCCceE
Q 006992 370 NPASRQIYLTFPADSTFREE---DV--SNYFSIYGPVQDVRIPYQ-----QKRM-F-GFVTFVYPETVKIILAKGNPHFV 437 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEe---dL--re~FsqFG~V~dVrI~~D-----ksRG-F-GFVtF~~~e~A~~Al~~mng~~I 437 (622)
.-...-+||-+|.+....|+ -| .+||++||.|..|.|-+- ---+ + -||+|...|+|.++|.+.++..+
T Consensus 111 VvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 111 VVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred eeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 34566799999955555565 33 489999999999977542 1112 2 39999999999999999999999
Q ss_pred cCeEEEEEeCcc
Q 006992 438 CDARVLVKPYKE 449 (622)
Q Consensus 438 ~GR~I~Vk~Ak~ 449 (622)
+||.|+..+...
T Consensus 191 DGr~lkatYGTT 202 (480)
T COG5175 191 DGRVLKATYGTT 202 (480)
T ss_pred cCceEeeecCch
Confidence 999999877654
No 96
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.74 E-value=0.0044 Score=54.64 Aligned_cols=72 Identities=11% Similarity=0.051 Sum_probs=47.3
Q ss_pred ceEEEcCCCCCCCCHHH----HHHHhhcc-CCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCc
Q 006992 374 RQIYLTFPADSTFREED----VSNYFSIY-GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (622)
Q Consensus 374 rtIYVGnL~~~~~TEed----Lre~FsqF-G~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak 448 (622)
..|||.|| |.+.+... |+.++.-+ |.|..| ..+-|+|.|.+++.|++|.+.|++-.+.|++|.|.+..
T Consensus 3 s~L~V~NL-P~~~d~~~I~~RL~qLsdNCGGkVl~v------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNL-PTNKDPSSIKNRLRQLSDNCGGKVLSV------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES---TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecC-CCCCCHHHHHHHHHHHhhccCCEEEEE------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 46999999 87777654 45556566 588777 46899999999999999999999999999999999875
Q ss_pred cCCC
Q 006992 449 EKGK 452 (622)
Q Consensus 449 ~K~k 452 (622)
....
T Consensus 76 ~~r~ 79 (90)
T PF11608_consen 76 KNRE 79 (90)
T ss_dssp -S--
T ss_pred Cccc
Confidence 4443
No 97
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.69 E-value=0.0088 Score=64.14 Aligned_cols=85 Identities=15% Similarity=0.133 Sum_probs=68.6
Q ss_pred CCCCCCceEEEcCCCCC---CCC-------HHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceE
Q 006992 368 IVNPASRQIYLTFPADS---TFR-------EEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFV 437 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~---~~T-------EedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I 437 (622)
+.....++|.+.|+-.. ..+ .++|++--++||.|.+|.|---...|.+-|.|.+.++|+.++..|+|.++
T Consensus 260 sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~f 339 (382)
T KOG1548|consen 260 SKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWF 339 (382)
T ss_pred ccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeee
Confidence 45567889999998221 222 46777889999999999654335789999999999999999999999999
Q ss_pred cCeEEEEEeCccCCC
Q 006992 438 CDARVLVKPYKEKGK 452 (622)
Q Consensus 438 ~GR~I~Vk~Ak~K~k 452 (622)
+||.|....+-.+.+
T Consensus 340 dgRql~A~i~DG~t~ 354 (382)
T KOG1548|consen 340 DGRQLTASIWDGKTK 354 (382)
T ss_pred cceEEEEEEeCCcce
Confidence 999999988765554
No 98
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.64 E-value=0.0021 Score=58.22 Aligned_cols=56 Identities=25% Similarity=0.308 Sum_probs=37.4
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCC
Q 006992 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN 433 (622)
Q Consensus 375 tIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mn 433 (622)
-|+|.++ ...++.++|++.|++||+|..|.+.. .---|||.|.+++.|+.|++++.
T Consensus 3 il~~~g~-~~~~~re~iK~~f~~~g~V~yVD~~~--G~~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 3 ILKFSGL-GEPTSREDIKEAFSQFGEVAYVDFSR--GDTEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp EEEEEE---SS--HHHHHHHT-SS--EEEEE--T--T-SEEEEEESS---HHHHHHHHH
T ss_pred EEEEecC-CCCcCHHHHHHHHHhcCCcceEEecC--CCCEEEEEECCcchHHHHHHHHH
Confidence 3677778 77889999999999999999998877 45589999999999999998763
No 99
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.61 E-value=0.0017 Score=72.82 Aligned_cols=83 Identities=16% Similarity=0.272 Sum_probs=75.2
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
....+|||++| +..+++..++++...||++...+++.| -++||||.+|.++.....|++.+||..+.++++.|..
T Consensus 287 ~~~~ki~v~~l-p~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 287 DSPNKIFVGGL-PLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred cccchhhhccC-cCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 45678999999 999999999999999999999998876 6899999999999999999999999999999999998
Q ss_pred CccCCCCc
Q 006992 447 YKEKGKVP 454 (622)
Q Consensus 447 Ak~K~k~~ 454 (622)
|.......
T Consensus 366 A~~g~~~~ 373 (500)
T KOG0120|consen 366 AIVGASNA 373 (500)
T ss_pred hhccchhc
Confidence 87655443
No 100
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.30 E-value=0.0083 Score=67.03 Aligned_cols=75 Identities=17% Similarity=0.243 Sum_probs=57.2
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeec--c-----CCCc---eEEEEECCHHHHHHHHHhCCCceEcCe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY--Q-----QKRM---FGFVTFVYPETVKIILAKGNPHFVCDA 440 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~--D-----ksRG---FGFVtF~~~e~A~~Al~~mng~~I~GR 440 (622)
.-+++||||+| +++++|+.|...|.+||.|. |..+. . ..+| |.|+.|+++..++.-+.+. ..+..
T Consensus 257 ~~S~KVFvGGl-p~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC---~~~~~ 331 (520)
T KOG0129|consen 257 RYSRKVFVGGL-PWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC---SEGEG 331 (520)
T ss_pred ccccceeecCC-CccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH---hhccc
Confidence 56789999999 99999999999999999975 33442 1 3677 9999999999999888763 33555
Q ss_pred EEEEEeCccC
Q 006992 441 RVLVKPYKEK 450 (622)
Q Consensus 441 ~I~Vk~Ak~K 450 (622)
..+++...+.
T Consensus 332 ~~yf~vss~~ 341 (520)
T KOG0129|consen 332 NYYFKVSSPT 341 (520)
T ss_pred ceEEEEecCc
Confidence 5555444443
No 101
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.23 E-value=0.01 Score=66.86 Aligned_cols=61 Identities=25% Similarity=0.298 Sum_probs=54.1
Q ss_pred HHHHHHhhccCCceeEEeecc-------CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 006992 389 EDVSNYFSIYGPVQDVRIPYQ-------QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (622)
Q Consensus 389 edLre~FsqFG~V~dVrI~~D-------ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~ 449 (622)
|+|+.-+++||.|.+|.|+.+ -.-|.-||+|.+.+++++|.++|+|..+.||.|...++-+
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 667778889999999999875 3567789999999999999999999999999999888754
No 102
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.11 E-value=0.0083 Score=68.97 Aligned_cols=80 Identities=15% Similarity=0.114 Sum_probs=67.6
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCcee-EEee---ccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQD-VRIP---YQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~d-VrI~---~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
.....|||..| +..+++.++-++|..--.|++ |.|. .|+-++-|||.|..++++..|+.-...+++..|.|+|..
T Consensus 432 ~ag~~lyv~~l-P~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 432 GAGGALYVFQL-PVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CccceEEeccC-CccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 45668999999 999999999999999888888 6654 468899999999999988888877788999999999976
Q ss_pred CccCC
Q 006992 447 YKEKG 451 (622)
Q Consensus 447 Ak~K~ 451 (622)
..++.
T Consensus 511 i~~~~ 515 (944)
T KOG4307|consen 511 IADYA 515 (944)
T ss_pred hhhHH
Confidence 54433
No 103
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.09 E-value=0.024 Score=51.26 Aligned_cols=70 Identities=21% Similarity=0.225 Sum_probs=51.1
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhccCCceeEE-------------eeccCCCceEEEEECCHHHHHHHHHhCCCceEcCe
Q 006992 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVR-------------IPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDA 440 (622)
Q Consensus 374 rtIYVGnL~~~~~TEedLre~FsqFG~V~dVr-------------I~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR 440 (622)
+-|.|=+. +.. ....|-++|++||+|.+.. ++. ...+-.|+|+++.+|.+||.+ ||..|.|.
T Consensus 7 ~wVtVFGf-p~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~--~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~ 81 (100)
T PF05172_consen 7 TWVTVFGF-PPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPS--GGNWIHITYDNPLSAQRALQK-NGTIFSGS 81 (100)
T ss_dssp CEEEEE----GG-GHHHHHHHHHCCS-EECEEGGG----------E-C--CTTEEEEEESSHHHHHHHHTT-TTEEETTC
T ss_pred eEEEEEcc-CHH-HHHHHHHHHHhcceEEEeecccccccccccccCCC--CCCEEEEECCCHHHHHHHHHh-CCeEEcCc
Confidence 44666565 333 5677889999999999885 343 678999999999999999999 99999986
Q ss_pred E-EEEEeCc
Q 006992 441 R-VLVKPYK 448 (622)
Q Consensus 441 ~-I~Vk~Ak 448 (622)
- |-|++..
T Consensus 82 ~mvGV~~~~ 90 (100)
T PF05172_consen 82 LMVGVKPCD 90 (100)
T ss_dssp EEEEEEE-H
T ss_pred EEEEEEEcH
Confidence 4 4466653
No 104
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.99 E-value=0.0036 Score=40.32 Aligned_cols=18 Identities=44% Similarity=1.174 Sum_probs=16.7
Q ss_pred ccccccccccCCCCCCccCC
Q 006992 233 PCLYFARGYCKNGSSCRFVH 252 (622)
Q Consensus 233 pC~YFakG~CK~G~sCry~H 252 (622)
||+||.. |++|++|.|.|
T Consensus 1 ~Ck~~~~--C~~~~~C~f~H 18 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSH 18 (19)
T ss_pred CCcCcCC--CCCCCcCccCC
Confidence 6998877 99999999999
No 105
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=95.83 E-value=0.026 Score=62.96 Aligned_cols=76 Identities=20% Similarity=0.226 Sum_probs=63.6
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCcee-EEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQD-VRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~d-VrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
.....|=+.+| ++.+||+||.+||+--=.|.+ |-++.| ++-|=|||.|++.|.|+.|+.. +...|..|=|.|..
T Consensus 101 ~~d~vVRLRGL-Pfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 101 ANDGVVRLRGL-PFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFR 178 (510)
T ss_pred CCCceEEecCC-CccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeeh
Confidence 45667888999 999999999999998755555 334444 6778999999999999999999 88899999999976
Q ss_pred Cc
Q 006992 447 YK 448 (622)
Q Consensus 447 Ak 448 (622)
+.
T Consensus 179 Ss 180 (510)
T KOG4211|consen 179 SS 180 (510)
T ss_pred hH
Confidence 64
No 106
>PF00658 PABP: Poly-adenylate binding protein, unique domain; InterPro: IPR002004 The polyadenylate-binding protein (PABP) has a conserved C-terminal domain (PABC), which is also found in the hyperplastic discs protein (HYD) family of ubiquitin ligases that contain HECT domains (IPR000569 from INTERPRO) []. PABP recognises the 3' mRNA poly(A) tail and plays an essential role in eukaryotic translation initiation and mRNA stabilisation/degradation. PABC domains of PABP are peptide-binding domains that mediate PABP homo-oligomerisation and protein-protein interactions. In mammals, the PABC domain of PABP functions to recruit several different translation factors to the mRNA poly(A) tail [].; GO: 0003723 RNA binding; PDB: 3KUR_E 1JH4_A 2RQH_B 3KUI_A 3KUS_A 3KUJ_A 3KTR_A 2X04_A 3PTH_A 1JGN_A ....
Probab=95.81 E-value=0.0089 Score=51.01 Aligned_cols=50 Identities=28% Similarity=0.464 Sum_probs=40.2
Q ss_pred HHHHHhhhccCCCchhhhHhhhhcccCChhHHHHHhcCchHHHHHHHHHHHHH
Q 006992 8 RIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKE 60 (622)
Q Consensus 8 ~~v~~riq~l~pe~askI~g~ll~qd~~e~emirlA~gpd~ll~~~i~kak~~ 60 (622)
..+|.+|++++|++|.||-|+|| |....|++.|=-.| .+|+..|..|-.-
T Consensus 22 e~Ly~~V~~~~p~~A~KITGMLL--e~~~~ell~ll~~~-~~L~~kv~eA~~v 71 (72)
T PF00658_consen 22 ERLYPLVQAIYPELAGKITGMLL--EMDNSELLHLLEDP-ELLREKVQEAIEV 71 (72)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHT--TSCHHHHHHHHHTH-HHHHHHHHHHHHH
T ss_pred ccccHHHHHhCcchhHHHHHHHh--cCCHHHHHHHhCCH-HHHHHHHHHHHHh
Confidence 45799999999999999999998 46678888887776 5667777777543
No 107
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=95.71 E-value=0.038 Score=56.31 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=66.8
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEc-CeEEEEEeCc
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVC-DARVLVKPYK 448 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~-GR~I~Vk~Ak 448 (622)
.+.+..+|+.+| +..++.+.|..+|.+|.--..||++.. .++.|||+|.+...|..|...+.+..|. ...+.|..++
T Consensus 143 ~ppn~ilf~~ni-P~es~~e~l~~lf~qf~g~keir~i~~-~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 143 APPNNILFLTNI-PSESESEMLSDLFEQFPGFKEIRLIPP-RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred CCCceEEEEecC-CcchhHHHHHHHHhhCcccceeEeccC-CCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 467889999999 889999999999999999999998773 4689999999999999999998877775 7777777654
No 108
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.59 E-value=0.013 Score=63.06 Aligned_cols=82 Identities=13% Similarity=0.174 Sum_probs=71.4
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCcee--------EEeecc----CCCceEEEEECCHHHHHHHHHhCCCceE
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQD--------VRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFV 437 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~d--------VrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I 437 (622)
....-+|||-++ +..+++.+|.++|.++|.|.. |.|-+| +.||=|-|+|+++-.|+.|+.-.++..+
T Consensus 63 ~s~~~ti~v~g~-~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 63 KSDNETIFVWGC-PDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred ccccccceeecc-CccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 466779999999 889999999999999999864 233333 6899999999999999999999999999
Q ss_pred cCeEEEEEeCccCCC
Q 006992 438 CDARVLVKPYKEKGK 452 (622)
Q Consensus 438 ~GR~I~Vk~Ak~K~k 452 (622)
+|..|+|..|..+..
T Consensus 142 ~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 142 CGNTIKVSLAERRTG 156 (351)
T ss_pred cCCCchhhhhhhccC
Confidence 999999998887765
No 109
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.50 E-value=0.035 Score=62.26 Aligned_cols=79 Identities=20% Similarity=0.233 Sum_probs=65.0
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhh-ccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceE----c
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFS-IYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFV----C 438 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~Fs-qFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I----~ 438 (622)
......+|||||+| +.-+|.++|..+|. -||-|..|-|=.| -.||-|=|+|.+..+--+||.+ .-..| -
T Consensus 365 q~lDprrTVFVGgv-prpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa-rFvql~h~d~ 442 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGL-PRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA-RFVQLDHTDI 442 (520)
T ss_pred cccCccceEEecCC-CCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh-heEEEecccc
Confidence 34466799999999 99999999999999 7999999998877 3789999999999999999987 22222 2
Q ss_pred CeEEEEEeCc
Q 006992 439 DARVLVKPYK 448 (622)
Q Consensus 439 GR~I~Vk~Ak 448 (622)
.++|.|+++.
T Consensus 443 ~KRVEIkPYv 452 (520)
T KOG0129|consen 443 DKRVEIKPYV 452 (520)
T ss_pred ceeeeeccee
Confidence 4577777776
No 110
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.43 E-value=0.0089 Score=65.59 Aligned_cols=62 Identities=21% Similarity=0.200 Sum_probs=54.1
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeec------c-----------CCCceEEEEECCHHHHHHHHHhCC
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY------Q-----------QKRMFGFVTFVYPETVKIILAKGN 433 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~------D-----------ksRGFGFVtF~~~e~A~~Al~~mn 433 (622)
-..|+|.+-+| +.+-.-+.|.++|+.+|.|..|||.. | ..+-+|+|+|+..+.|.+|.+.|+
T Consensus 229 l~srtivaenL-P~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 229 LPSRTIVAENL-PLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cccceEEEecC-CcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 47899999999 77777799999999999999999965 2 136789999999999999999975
No 111
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=95.31 E-value=0.017 Score=59.01 Aligned_cols=69 Identities=12% Similarity=0.135 Sum_probs=53.7
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceE
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFV 437 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I 437 (622)
.......||||.|| ..++||++|+.+|+.|--...++|-.-..-..|||.|++-+.|-.|+..+.|..|
T Consensus 205 ~~~~acstlfianl-~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 205 SGARACSTLFIANL-GPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred ccchhhhhHhhhcc-CCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 34466779999999 9999999999999999877766665422334788888888888888887665554
No 112
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=95.26 E-value=0.0067 Score=66.12 Aligned_cols=26 Identities=42% Similarity=1.115 Sum_probs=24.3
Q ss_pred CccccccccccccCCCCCCccCCCCC
Q 006992 230 GWRPCLYFARGYCKNGSSCRFVHGGE 255 (622)
Q Consensus 230 ~~kpC~YFakG~CK~G~sCry~Hg~~ 255 (622)
..|||.||-.|-|+.|.+|||.||..
T Consensus 139 sMkpC~ffLeg~CRF~enCRfSHG~~ 164 (486)
T KOG2185|consen 139 SMKPCKFFLEGRCRFGENCRFSHGLD 164 (486)
T ss_pred hhccchHhhccccccCcccccccCcc
Confidence 58999999999999999999999854
No 113
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.26 E-value=0.11 Score=56.44 Aligned_cols=79 Identities=15% Similarity=0.109 Sum_probs=70.3
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~ 449 (622)
.....-+.|-+|....++-+.|-.+|-.||.|+.|+.|+- +-|-|.|+..+..++++|+..||+..+.|.+|.|+..+.
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT-k~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT-KPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec-ccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 3556678999996678888999999999999999999983 468999999999999999999999999999999998764
No 114
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=94.98 E-value=0.013 Score=60.67 Aligned_cols=69 Identities=20% Similarity=0.220 Sum_probs=58.7
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeec-c--------CCCc-------eEEEEECCHHHHHHHHHhCCCc
Q 006992 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY-Q--------QKRM-------FGFVTFVYPETVKIILAKGNPH 435 (622)
Q Consensus 372 ~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~-D--------ksRG-------FGFVtF~~~e~A~~Al~~mng~ 435 (622)
..--||+++| |..+....||++|++||+|-.|.+-. + +.+| =|+|+|.+...|..+...||+.
T Consensus 73 k~GVvylS~I-Pp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNI-PPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccC-CCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 4456999999 88999999999999999999998855 2 1111 1899999999999999999999
Q ss_pred eEcCeE
Q 006992 436 FVCDAR 441 (622)
Q Consensus 436 ~I~GR~ 441 (622)
.|.|++
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 999974
No 115
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.98 E-value=0.028 Score=63.55 Aligned_cols=74 Identities=14% Similarity=0.183 Sum_probs=59.2
Q ss_pred CceEEEcCCCCCCCCH-------HHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEc-CeE
Q 006992 373 SRQIYLTFPADSTFRE-------EDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVC-DAR 441 (622)
Q Consensus 373 ~rtIYVGnL~~~~~TE-------edLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~-GR~ 441 (622)
..-|+|-|+ + .+.+ .-|.++|+++|+|..+.+|.+ ..+||.|++|.+...|+.|++.+||+.|+ ..+
T Consensus 58 D~vVvv~g~-P-vV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 58 DSVVVVDGA-P-VVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred ceEEEECCC-c-ccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 346788887 3 3333 456789999999999999975 68999999999999999999999998886 566
Q ss_pred EEEEeCc
Q 006992 442 VLVKPYK 448 (622)
Q Consensus 442 I~Vk~Ak 448 (622)
..|...+
T Consensus 136 f~v~~f~ 142 (698)
T KOG2314|consen 136 FFVRLFK 142 (698)
T ss_pred EEeehhh
Confidence 6665443
No 116
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=94.88 E-value=0.017 Score=48.32 Aligned_cols=51 Identities=33% Similarity=0.521 Sum_probs=37.8
Q ss_pred HHHHHhhhccCCCchhhhHhhhhcccCChhHHHHHhcCchHHHHHHHHHHHHHh
Q 006992 8 RIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKEL 61 (622)
Q Consensus 8 ~~v~~riq~l~pe~askI~g~ll~qd~~e~emirlA~gpd~ll~~~i~kak~~L 61 (622)
.-+|.+|++++|++|.||-|+||= .+..|++.|=-.+ .+|.+-|..|-.-|
T Consensus 11 E~Lyp~V~~~~p~~A~KITGMLLE--md~~ell~lle~~-~~L~~kv~EA~~vl 61 (64)
T smart00517 11 ERLYPKVQALEPELAGKITGMLLE--MDNSELLHLLESP-ELLRSKVDEALEVL 61 (64)
T ss_pred HHHhHHHHhhCcccCCcCeeeeeC--CCHHHHHHHhcCH-HHHHHHHHHHHHHH
Confidence 347999999999999999999984 5557888875554 45555566654433
No 117
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.46 E-value=0.17 Score=48.81 Aligned_cols=73 Identities=19% Similarity=0.241 Sum_probs=54.1
Q ss_pred CCCceEEEcCCCC------CCCCH---HHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeE
Q 006992 371 PASRQIYLTFPAD------STFRE---EDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDAR 441 (622)
Q Consensus 371 ~~~rtIYVGnL~~------~~~TE---edLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~ 441 (622)
+..-||.|.-. . ..+.+ .+|-+.|.+||+|.=||++. +-=+|||.+-+.|-+|+.. ++..|+|+.
T Consensus 25 PpDaTVvVsv~-~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~----~~mwVTF~dg~sALaals~-dg~~v~g~~ 98 (146)
T PF08952_consen 25 PPDATVVVSVD-SPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG----DTMWVTFRDGQSALAALSL-DGIQVNGRT 98 (146)
T ss_dssp -TT-EEEEEEC-S-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET----TCEEEEESSCHHHHHHHHG-CCSEETTEE
T ss_pred CCCceEEEEec-CCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC----CeEEEEECccHHHHHHHcc-CCcEECCEE
Confidence 55667777666 3 23433 36778899999999999887 4689999999999999998 999999999
Q ss_pred EEEEeCcc
Q 006992 442 VLVKPYKE 449 (622)
Q Consensus 442 I~Vk~Ak~ 449 (622)
|.|+...+
T Consensus 99 l~i~LKtp 106 (146)
T PF08952_consen 99 LKIRLKTP 106 (146)
T ss_dssp EEEEE---
T ss_pred EEEEeCCc
Confidence 99987544
No 118
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.01 E-value=0.025 Score=58.67 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=50.3
Q ss_pred HHHHHHhh-ccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 389 EDVSNYFS-IYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 389 edLre~Fs-qFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
++|-..|+ +||+|+++.|-.+ .-+|=.+|.|..+|+|++|++.+|+-++.|++|.....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 55555666 9999999977553 67889999999999999999999999999999987654
No 119
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=93.94 E-value=0.024 Score=60.03 Aligned_cols=29 Identities=41% Similarity=0.894 Sum_probs=25.6
Q ss_pred CCCCccccccccc-cccCCCCCCccCCCCC
Q 006992 227 SGLGWRPCLYFAR-GYCKNGSSCRFVHGGE 255 (622)
Q Consensus 227 ~~~~~kpC~YFak-G~CK~G~sCry~Hg~~ 255 (622)
...+-|+|.+|.+ |+||.|..|+|.|+..
T Consensus 173 ~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~ 202 (332)
T KOG1677|consen 173 PKYKTKLCPKFQKTGLCKYGSRCRFIHGEP 202 (332)
T ss_pred CCCCCcCCCccccCCCCCCCCcCeecCCCc
Confidence 3567789999999 9999999999999754
No 120
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=93.61 E-value=0.058 Score=58.12 Aligned_cols=75 Identities=12% Similarity=0.070 Sum_probs=61.4
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhccC--CceeEEeec----cCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 373 SRQIYLTFPADSTFREEDVSNYFSIYG--PVQDVRIPY----QQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 373 ~rtIYVGnL~~~~~TEedLre~FsqFG--~V~dVrI~~----DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
.-.+||||| -|.+|++||.+....-| .+.++++.. +++||||.|...+...+++.++.+..+.|.|..-.|-.
T Consensus 80 k~~~YvGNL-~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 80 KYCCYVGNL-LWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred eEEEEecce-eEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 446899999 99999999999888777 344554443 37999999999999999999999999999998777765
Q ss_pred Cc
Q 006992 447 YK 448 (622)
Q Consensus 447 Ak 448 (622)
+.
T Consensus 159 ~N 160 (498)
T KOG4849|consen 159 YN 160 (498)
T ss_pred cc
Confidence 53
No 121
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.63 E-value=0.25 Score=52.42 Aligned_cols=63 Identities=21% Similarity=0.162 Sum_probs=52.4
Q ss_pred HHHHHHHhhccCCceeEEeecc-----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCccC
Q 006992 388 EEDVSNYFSIYGPVQDVRIPYQ-----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (622)
Q Consensus 388 EedLre~FsqFG~V~dVrI~~D-----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~K 450 (622)
|+++++..++||.|..|-|..+ .-----||+|...+.|-+|+-.|||.+|.||.|..+++...
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLE 367 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHH
Confidence 5778889999999999977543 11224799999999999999999999999999998887543
No 122
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=92.28 E-value=0.46 Score=55.30 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=64.3
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCce-eEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQ-DVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~-dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
+..+-|-|.|. +++++-+||-+||+-|-.+- +|+|-+. ..-|=+-|.|++.++|.+|...++++.|..|.|++..
T Consensus 865 pGp~V~~~~n~-Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 865 PGPRVLSCNNF-PFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCeEEEecCC-CccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 34457888999 99999999999999997775 5666552 5668899999999999999999999999999998863
No 123
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=92.23 E-value=0.29 Score=53.97 Aligned_cols=77 Identities=21% Similarity=0.210 Sum_probs=67.1
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCe-EEEEEeCc
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDA-RVLVKPYK 448 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR-~I~Vk~Ak 448 (622)
+.+.+|.+.++ +..++|++|++.|.+-|-+.+...-..+.|-+|.+.+.+.|+|-.|+-.|+.|.+.+. -++|.+.+
T Consensus 412 PpsatlHlsni-p~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 412 PPSATLHLSNI-PPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred CchhheeeccC-CcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 45568999999 8899999999999999988777666666778999999999999999999999999765 78888765
No 124
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=92.15 E-value=0.64 Score=38.84 Aligned_cols=55 Identities=18% Similarity=0.130 Sum_probs=44.9
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhcc---CCceeEEeeccCCCceEEEEECCHHHHHHHHHhC
Q 006992 373 SRQIYLTFPADSTFREEDVSNYFSIY---GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKG 432 (622)
Q Consensus 373 ~rtIYVGnL~~~~~TEedLre~FsqF---G~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~m 432 (622)
..+|+|.|+ .+++.++++.||..| .....|..+-|. -+=|.|.+.+.|.+||.+|
T Consensus 5 peavhirGv--d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGV--DELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcC--CCCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 457999999 579999999999999 234577777764 3678899999999999864
No 125
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.91 E-value=0.71 Score=46.09 Aligned_cols=63 Identities=16% Similarity=0.016 Sum_probs=48.1
Q ss_pred CHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCC--CceEcCeEEEEEeCccCC
Q 006992 387 REEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN--PHFVCDARVLVKPYKEKG 451 (622)
Q Consensus 387 TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mn--g~~I~GR~I~Vk~Ak~K~ 451 (622)
..+.|+++|..|+.+....+.. +-+=..|.|.+.++|.+|...++ +..+.|..++|.+++.-.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~--sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK--SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET--TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcC--CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 4688999999999999887776 55678999999999999999998 899999999999886544
No 126
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=90.81 E-value=0.26 Score=58.62 Aligned_cols=83 Identities=10% Similarity=0.150 Sum_probs=70.7
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcC--eEEEEEeC
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCD--ARVLVKPY 447 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~G--R~I~Vk~A 447 (622)
..-++.++||+| ...+....|...|..||.|..|.+-. .--|++|.|.+...++.|+..|-+..|.| +++.|.+|
T Consensus 452 st~ttr~~sggl-g~w~p~~~l~r~fd~fGpir~Idy~h--gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 452 STPTTRLQSGGL-GPWSPVSRLNREFDRFGPIRIIDYRH--GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred cccceeeccCCC-CCCChHHHHHHHhhccCcceeeeccc--CCcceeeecccCccchhhHHHHhcCcCCCCCcccccccc
Confidence 345678999999 66788899999999999999877544 66799999999999999999998888875 77999999
Q ss_pred ccCCCCch
Q 006992 448 KEKGKVPD 455 (622)
Q Consensus 448 k~K~k~~~ 455 (622)
.+-...+.
T Consensus 529 ~~~~~~Pq 536 (975)
T KOG0112|consen 529 SPPGATPQ 536 (975)
T ss_pred cCCCCChh
Confidence 88776653
No 127
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=90.49 E-value=0.45 Score=52.24 Aligned_cols=76 Identities=16% Similarity=0.283 Sum_probs=59.8
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhccCCceeEEeec--c-----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY--Q-----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 375 tIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~--D-----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
-|-|.|| ...+|.+.+..+|.-.|+|.+++|+. | -..-.+||.|.+...|..|-...| ..+-++-|.|.++
T Consensus 9 vIqvani-spsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtn-tvfvdraliv~p~ 86 (479)
T KOG4676|consen 9 VIQVANI-SPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTN-TVFVDRALIVRPY 86 (479)
T ss_pred eeeeccc-CchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhcc-ceeeeeeEEEEec
Confidence 8999999 88999999999999999999999865 2 233489999999999888766544 4555666777776
Q ss_pred ccCCC
Q 006992 448 KEKGK 452 (622)
Q Consensus 448 k~K~k 452 (622)
-....
T Consensus 87 ~~~~~ 91 (479)
T KOG4676|consen 87 GDEVI 91 (479)
T ss_pred CCCCC
Confidence 55443
No 128
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=90.47 E-value=0.042 Score=64.61 Aligned_cols=67 Identities=25% Similarity=0.338 Sum_probs=57.7
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeec----cCCCceEEEEECCHHHHHHHHHhCCCceEc
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY----QQKRMFGFVTFVYPETVKIILAKGNPHFVC 438 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~----DksRGFGFVtF~~~e~A~~Al~~mng~~I~ 438 (622)
....++||.+| +..+.+.+|...|+.+|.|..|+|.- ++-||+|+|.|..++.+.+||.....+.+.
T Consensus 665 R~~~~~fvsnl-~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 665 RDLIKIFVSNL-SPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHHhhc-chhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 45568999999 89999999999999999999988762 478999999999999999999985555544
No 129
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.55 E-value=0.13 Score=55.75 Aligned_cols=23 Identities=39% Similarity=0.912 Sum_probs=21.6
Q ss_pred cccccccccccCCCCCCccCCCC
Q 006992 232 RPCLYFARGYCKNGSSCRFVHGG 254 (622)
Q Consensus 232 kpC~YFakG~CK~G~sCry~Hg~ 254 (622)
.+|+||.+|+|+.|.-|||.|-.
T Consensus 9 tic~~~~~g~c~~g~~cr~~h~~ 31 (344)
T KOG1039|consen 9 TICKYYQKGNCKFGDLCRLSHSL 31 (344)
T ss_pred hhhhhcccccccccceeeeeccC
Confidence 79999999999999999999953
No 130
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=89.27 E-value=1 Score=49.35 Aligned_cols=77 Identities=13% Similarity=0.059 Sum_probs=60.9
Q ss_pred CceEEEcCCC-CCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcC--eEEEEEeCcc
Q 006992 373 SRQIYLTFPA-DSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCD--ARVLVKPYKE 449 (622)
Q Consensus 373 ~rtIYVGnL~-~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~G--R~I~Vk~Ak~ 449 (622)
++-|.++-|. -+.+|.+-|..+-...|+|..|.|.+ |.---|.|+|++-+.|++|.+.|||..|.. -.++|.+|++
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfk-kngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP 198 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFK-KNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKP 198 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEe-ccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCc
Confidence 3334444431 46899999999999999999998887 233359999999999999999999998853 4678888876
Q ss_pred C
Q 006992 450 K 450 (622)
Q Consensus 450 K 450 (622)
.
T Consensus 199 ~ 199 (494)
T KOG1456|consen 199 T 199 (494)
T ss_pred c
Confidence 4
No 131
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=89.24 E-value=0.18 Score=59.53 Aligned_cols=76 Identities=12% Similarity=0.006 Sum_probs=66.6
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCc
Q 006992 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (622)
Q Consensus 372 ~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak 448 (622)
...+++|.|+ ++..|.+.|+.+|+.+|.+++++++.. +.+|.|||.|.++.++..++..++...+.-+.+.|....
T Consensus 735 gK~~v~i~g~-pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsn 813 (881)
T KOG0128|consen 735 GKISVAISGP-PFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSN 813 (881)
T ss_pred hhhhhheeCC-CCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccC
Confidence 4668999999 999999999999999999999998773 789999999999999999999988887777766666543
No 132
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.10 E-value=0.15 Score=54.82 Aligned_cols=83 Identities=11% Similarity=0.051 Sum_probs=63.1
Q ss_pred CCCceEEEcCCCCCCCCHHHHH--HHhhccCCceeEEeeccC-------CCceEEEEECCHHHHHHHHHhCCCceEcCeE
Q 006992 371 PASRQIYLTFPADSTFREEDVS--NYFSIYGPVQDVRIPYQQ-------KRMFGFVTFVYPETVKIILAKGNPHFVCDAR 441 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLr--e~FsqFG~V~dVrI~~Dk-------sRGFGFVtF~~~e~A~~Al~~mng~~I~GR~ 441 (622)
-..+.+||-+|......|..|+ ++|.+||.|.+|.+-.+. .-.-++|||...|+|..||..-++..++|+.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 3446689999844445666665 699999999999886642 1123899999999999999999999999998
Q ss_pred EEEEeCccCCCC
Q 006992 442 VLVKPYKEKGKV 453 (622)
Q Consensus 442 I~Vk~Ak~K~k~ 453 (622)
++......+-..
T Consensus 155 lka~~gttkycs 166 (327)
T KOG2068|consen 155 LKASLGTTKYCS 166 (327)
T ss_pred hHHhhCCCcchh
Confidence 777666555443
No 133
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=89.02 E-value=0.42 Score=50.46 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=28.4
Q ss_pred CCceEEEcCCCCC------------CCCHHHHHHHhhccCCceeEEeec
Q 006992 372 ASRQIYLTFPADS------------TFREEDVSNYFSIYGPVQDVRIPY 408 (622)
Q Consensus 372 ~~rtIYVGnL~~~------------~~TEedLre~FsqFG~V~dVrI~~ 408 (622)
...|||+.+| +- --+|+.|+..|..||+|..|.||.
T Consensus 148 rpdti~la~i-p~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 148 RPDTIHLAGI-PCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCceeecCC-cceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 4457888887 42 135889999999999999999864
No 134
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=88.26 E-value=0.53 Score=53.98 Aligned_cols=81 Identities=7% Similarity=0.044 Sum_probs=66.6
Q ss_pred CCCCCCCCceEEEcCCCCCCCCHHHHHHHhh-ccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceE---cCeE
Q 006992 366 AGIVNPASRQIYLTFPADSTFREEDVSNYFS-IYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFV---CDAR 441 (622)
Q Consensus 366 ~g~~~~~~rtIYVGnL~~~~~TEedLre~Fs-qFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I---~GR~ 441 (622)
.......++-|||.|| -.-||...|+++.. ..|.|++..| |+-|--+||+|.+.++|.....+|++... +++.
T Consensus 437 SPsR~~~SnvlhI~nL-vRPFTlgQLkelL~rtgg~Vee~Wm--DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 437 SPSRKEPSNVLHIDNL-VRPFTLGQLKELLGRTGGNVEEFWM--DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCCCCccceEeeecc-cccchHHHHHHHHhhccCchHHHHH--HHhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 3456678889999999 88999999999999 6778888733 44667799999999999999999988776 6777
Q ss_pred EEEEeCcc
Q 006992 442 VLVKPYKE 449 (622)
Q Consensus 442 I~Vk~Ak~ 449 (622)
|.|.+...
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 77777653
No 135
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=87.57 E-value=1.4 Score=48.94 Aligned_cols=78 Identities=12% Similarity=0.027 Sum_probs=60.0
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCC-ceEcCeEEEEEeCccCCC
Q 006992 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNP-HFVCDARVLVKPYKEKGK 452 (622)
Q Consensus 374 rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng-~~I~GR~I~Vk~Ak~K~k 452 (622)
.++|+|+| ....+..||+.+|..----..=.++. .-||+||..-+..-|.+|++.+++ ..+.|+++.|....++..
T Consensus 2 nklyignL-~p~~~psdl~svfg~ak~~~~g~fl~--k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNL-SPQVTPSDLESVFGDAKIPGSGQFLV--KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred Cccccccc-CCCCChHHHHHHhccccCCCCcceee--ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 47899999 88999999999998651111111222 579999999999999999999875 567899999988776654
Q ss_pred Cc
Q 006992 453 VP 454 (622)
Q Consensus 453 ~~ 454 (622)
+.
T Consensus 79 rs 80 (584)
T KOG2193|consen 79 RS 80 (584)
T ss_pred Hh
Confidence 43
No 136
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=87.40 E-value=1.1 Score=47.98 Aligned_cols=61 Identities=23% Similarity=0.244 Sum_probs=49.9
Q ss_pred CHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeE-EEEEeCccC
Q 006992 387 REEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDAR-VLVKPYKEK 450 (622)
Q Consensus 387 TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~-I~Vk~Ak~K 450 (622)
.-.-|-.+|++||+|.++.... .-.+=.|.|.+.-+|++||.+ |+.+|+|.. |-|+++..|
T Consensus 209 ~~s~vL~~F~~cG~Vvkhv~~~--ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 209 QVSIVLNLFSRCGEVVKHVTPS--NGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred chhHHHHHHHhhCeeeeeecCC--CCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCH
Confidence 4556789999999999986653 667999999999999999999 999998864 456665544
No 137
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=87.14 E-value=1.8 Score=43.69 Aligned_cols=73 Identities=11% Similarity=0.066 Sum_probs=60.2
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceE--cCeEEEEEeC
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFV--CDARVLVKPY 447 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I--~GR~I~Vk~A 447 (622)
.+...|.|.+| +..-+.+||+++.-+-|.|.-..+.+ -|.|.|.|...|+.+-|+.+++.+.+ .|-..++...
T Consensus 113 rSe~RVvVsGL-p~SgSWQDLKDHmReaGdvCfadv~r---Dg~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~ 187 (241)
T KOG0105|consen 113 RSEYRVVVSGL-PPSGSWQDLKDHMREAGDVCFADVQR---DGVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVR 187 (241)
T ss_pred ccceeEEEecC-CCCCchHHHHHHHHhhCCeeeeeeec---ccceeeeeeehhhHHHHHHhhccccccCcCcEeeEEec
Confidence 44567999999 88999999999999999998887766 47999999999999999999876655 3555555443
No 138
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=86.91 E-value=0.15 Score=60.50 Aligned_cols=81 Identities=16% Similarity=0.212 Sum_probs=66.0
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
.....++|||+|+| +..+++.+|+..|..||.|.+|.|-.- .---||||.|.+-..+-.|.-.+.+..|..-.+++
T Consensus 367 DD~~atrTLf~Gnl-~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNL-DSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCc-ccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 44578899999999 999999999999999999999988442 23349999999999999998888777776556666
Q ss_pred EeCcc
Q 006992 445 KPYKE 449 (622)
Q Consensus 445 k~Ak~ 449 (622)
..-.+
T Consensus 446 glG~~ 450 (975)
T KOG0112|consen 446 GLGQP 450 (975)
T ss_pred ccccc
Confidence 55543
No 139
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=85.79 E-value=0.66 Score=48.51 Aligned_cols=74 Identities=14% Similarity=0.180 Sum_probs=60.5
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCC----CceEcCeEEEEEe
Q 006992 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGN----PHFVCDARVLVKP 446 (622)
Q Consensus 374 rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mn----g~~I~GR~I~Vk~ 446 (622)
.-|||.|| ...++.+.|...|+.||+|+...+..| +.-+=++|.|...-.|.+|+.... +....++.+.|.+
T Consensus 32 a~l~V~nl-~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNL-MQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEec-chhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 67999999 888999999999999999997766554 566789999999999999988763 3445677777766
Q ss_pred Cc
Q 006992 447 YK 448 (622)
Q Consensus 447 Ak 448 (622)
..
T Consensus 111 ~e 112 (275)
T KOG0115|consen 111 ME 112 (275)
T ss_pred hh
Confidence 54
No 140
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=85.56 E-value=1.2 Score=48.90 Aligned_cols=67 Identities=16% Similarity=0.137 Sum_probs=50.8
Q ss_pred EEEcCCCCCCCCHHHHHHHhhcc----CCceeEEeec---cCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 376 IYLTFPADSTFREEDVSNYFSIY----GPVQDVRIPY---QQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 376 IYVGnL~~~~~TEedLre~FsqF----G~V~dVrI~~---DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
|-..+| +++.|+.++.+||.+- |-++.|-.++ +|.-|=|||.|..+++|++||.+ +...|.-|=|.+
T Consensus 164 vRmRGL-Pfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 164 VRMRGL-PFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred EEecCC-CCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 445789 9999999999999742 2344554443 37789999999999999999998 766665554443
No 141
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=82.71 E-value=1.4 Score=48.40 Aligned_cols=75 Identities=12% Similarity=0.107 Sum_probs=62.7
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhccCCcee---EEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQD---VRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 373 ~rtIYVGnL~~~~~TEedLre~FsqFG~V~d---VrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
...|-+.+| ++..+.+||-.||..|-.-.+ |.|+.+ +.-|=|||.|.+.|.|..|..+.+.+...+|-|.|..
T Consensus 280 kdcvRLRGL-Py~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGL-PYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCC-ChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 567889999 999999999999999974332 566653 6779999999999999999998777777889888877
Q ss_pred Cc
Q 006992 447 YK 448 (622)
Q Consensus 447 Ak 448 (622)
+.
T Consensus 359 ~S 360 (508)
T KOG1365|consen 359 CS 360 (508)
T ss_pred cc
Confidence 64
No 142
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=81.07 E-value=7 Score=38.12 Aligned_cols=74 Identities=16% Similarity=0.199 Sum_probs=56.0
Q ss_pred CCCCceEEEcCCCCCCC-CHHHHH---HHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 370 NPASRQIYLTFPADSTF-REEDVS---NYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~-TEedLr---e~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
.+.-.||.|.-| ..++ ..+||+ ...+.||+|.+|.+. .|--|.|+|.|-.+|=.|+.+... ..-|..+.+.
T Consensus 83 epPMsTIVVRWl-kknm~~~edl~sV~~~Ls~fGpI~SVT~c---GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 83 EPPMSTIVVRWL-KKNMQPTEDLKSVIQRLSVFGPIQSVTLC---GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCCceeEEeehh-hhcCChHHHHHHHHHHHHhcCCcceeeec---CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 355678999887 4433 344454 567789999999765 477899999999999999999654 5677788887
Q ss_pred eCc
Q 006992 446 PYK 448 (622)
Q Consensus 446 ~Ak 448 (622)
|-+
T Consensus 158 Wqq 160 (166)
T PF15023_consen 158 WQQ 160 (166)
T ss_pred ccc
Confidence 744
No 143
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=78.11 E-value=0.76 Score=49.47 Aligned_cols=23 Identities=35% Similarity=0.847 Sum_probs=21.2
Q ss_pred CccccccccccccCCCCC-CccCC
Q 006992 230 GWRPCLYFARGYCKNGSS-CRFVH 252 (622)
Q Consensus 230 ~~kpC~YFakG~CK~G~s-Cry~H 252 (622)
..-+|.=|.||.|+||.. |||.|
T Consensus 36 ~~eVCReF~rn~C~R~d~~CkfaH 59 (331)
T KOG2494|consen 36 TLEVCREFLRNTCSRGDRECKFAH 59 (331)
T ss_pred HHHHHHHHHhccccCCCccccccC
Confidence 345899999999999999 99999
No 144
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=76.91 E-value=9.1 Score=34.13 Aligned_cols=56 Identities=20% Similarity=0.354 Sum_probs=41.2
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCC
Q 006992 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN 433 (622)
Q Consensus 372 ~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mn 433 (622)
...-.||+++ ......||.++|+.||.|.- ..+- -.-|||...+.+.|..|+..+.
T Consensus 8 RdHVFhltFP--keWK~~DI~qlFspfG~I~V-sWi~---dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLTFP--KEWKTSDIYQLFSPFGQIYV-SWIN---DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE----TT--HHHHHHHCCCCCCEEE-EEEC---TTEEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEeCc--hHhhhhhHHHHhccCCcEEE-EEEc---CCcEEEEeecHHHHHHHHHHhc
Confidence 3445778865 67889999999999999853 3333 3479999999999999988864
No 145
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=74.60 E-value=1.5 Score=46.61 Aligned_cols=24 Identities=38% Similarity=0.898 Sum_probs=21.6
Q ss_pred cccccc-cccccCCCCCCccCCCCC
Q 006992 232 RPCLYF-ARGYCKNGSSCRFVHGGE 255 (622)
Q Consensus 232 kpC~YF-akG~CK~G~sCry~Hg~~ 255 (622)
-||.|| .+|.|.+|+.|.|.|..+
T Consensus 135 ~~c~~Fs~~G~cs~g~~c~~~h~dp 159 (285)
T COG5084 135 PPCRSFSLKGSCSSGPSCGYSHIDP 159 (285)
T ss_pred CCcccccccceeccCCCCCccccCc
Confidence 489999 999999999999999743
No 146
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=71.17 E-value=2.4 Score=45.03 Aligned_cols=80 Identities=14% Similarity=0.055 Sum_probs=64.6
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeec----cCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY----QQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~----DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
....++|||.+ .+.+.+.+...+|..+|.+..+.+.. +.++|++.|.|...+.+..++...-...+.++.+....
T Consensus 86 ~~~~~~f~g~~-s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGEL-SENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDL 164 (285)
T ss_pred ccccccccccc-ccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcc
Confidence 35789999999 88888888999999999998887755 27999999999999999999998544566666665554
Q ss_pred CccCC
Q 006992 447 YKEKG 451 (622)
Q Consensus 447 Ak~K~ 451 (622)
...+.
T Consensus 165 ~~~~~ 169 (285)
T KOG4210|consen 165 NTRRG 169 (285)
T ss_pred ccccc
Confidence 44433
No 147
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=68.51 E-value=2.4 Score=48.29 Aligned_cols=26 Identities=38% Similarity=0.966 Sum_probs=23.2
Q ss_pred CCCccccccccccccCCCCCCccCCC
Q 006992 228 GLGWRPCLYFARGYCKNGSSCRFVHG 253 (622)
Q Consensus 228 ~~~~kpC~YFakG~CK~G~sCry~Hg 253 (622)
--..-||-=|.||-|++|-+|.|.||
T Consensus 233 hYs~tpCPefrkG~C~rGD~CEyaHg 258 (528)
T KOG1595|consen 233 HYSSTPCPEFRKGSCERGDSCEYAHG 258 (528)
T ss_pred cccCccCcccccCCCCCCCccccccc
Confidence 33556999999999999999999998
No 148
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=67.91 E-value=3.2 Score=44.98 Aligned_cols=26 Identities=38% Similarity=0.860 Sum_probs=23.7
Q ss_pred CCCccccccccccccCCCCCCccCCC
Q 006992 228 GLGWRPCLYFARGYCKNGSSCRFVHG 253 (622)
Q Consensus 228 ~~~~kpC~YFakG~CK~G~sCry~Hg 253 (622)
..+-..|+||.+|.|+.|..|-|+|.
T Consensus 74 ~~~~~vcK~~l~glC~kgD~C~Flhe 99 (325)
T KOG1040|consen 74 SRGKVVCKHWLRGLCKKGDQCEFLHE 99 (325)
T ss_pred cCCceeehhhhhhhhhccCcCcchhh
Confidence 55778999999999999999999993
No 149
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=67.16 E-value=2.1 Score=46.43 Aligned_cols=28 Identities=25% Similarity=0.796 Sum_probs=24.7
Q ss_pred CCCccccccccccccCCCCCCccCCCCC
Q 006992 228 GLGWRPCLYFARGYCKNGSSCRFVHGGE 255 (622)
Q Consensus 228 ~~~~kpC~YFakG~CK~G~sCry~Hg~~ 255 (622)
.-..|.|.+|.+|||.+|.+|++.|...
T Consensus 131 qt~~k~c~~~~~g~c~~g~~c~~~h~~~ 158 (325)
T KOG1040|consen 131 QTAIKKCKWYKEGFCRGGPSCKKRHERK 158 (325)
T ss_pred hhhhhccchhhhccCCCcchhhhhhhcc
Confidence 4467899999999999999999999743
No 150
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=66.91 E-value=3.1 Score=28.45 Aligned_cols=19 Identities=37% Similarity=0.941 Sum_probs=16.4
Q ss_pred cccccccc-ccCCCCCCccCC
Q 006992 233 PCLYFARG-YCKNGSSCRFVH 252 (622)
Q Consensus 233 pC~YFakG-~CK~G~sCry~H 252 (622)
.|.|..+| .|.. .+|.|.|
T Consensus 2 lC~yEl~Gg~Cnd-~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVCND-PDCEFQH 21 (23)
T ss_pred CCccccCCCeeCC-CCCCccc
Confidence 59999999 8865 6799999
No 151
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=66.71 E-value=5.6 Score=33.59 Aligned_cols=59 Identities=17% Similarity=0.155 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHhhccCCce-----eEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 384 STFREEDVSNYFSIYGPVQ-----DVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 384 ~~~TEedLre~FsqFG~V~-----dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
..++..+|-.++..-+.|. +|+|. ..|.||+-.. +.|+.+++.|++..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~----~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF----DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe----eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4678899999998876554 44543 3599998665 5789999999999999999999875
No 152
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=63.63 E-value=2.7 Score=44.85 Aligned_cols=21 Identities=38% Similarity=1.146 Sum_probs=20.1
Q ss_pred ccccccccccCCCCCCccCCC
Q 006992 233 PCLYFARGYCKNGSSCRFVHG 253 (622)
Q Consensus 233 pC~YFakG~CK~G~sCry~Hg 253 (622)
.|-||..|.|..|..|+|.|+
T Consensus 94 vCafFk~g~C~KG~kCKFsHd 114 (343)
T KOG1763|consen 94 VCAFFKQGTCTKGDKCKFSHD 114 (343)
T ss_pred HHHHHhccCCCCCCcccccch
Confidence 699999999999999999995
No 153
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=63.33 E-value=41 Score=31.08 Aligned_cols=67 Identities=13% Similarity=0.116 Sum_probs=50.7
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhccC-CceeEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcC
Q 006992 372 ASRQIYLTFPADSTFREEDVSNYFSIYG-PVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (622)
Q Consensus 372 ~~rtIYVGnL~~~~~TEedLre~FsqFG-~V~dVrI~~D--ksRGFGFVtF~~~e~A~~Al~~mng~~I~G 439 (622)
....+-+..+ ++-++-++|..+.+.+- .|..+||++| ..|=-..++|.+.+.|+.=....||+.++.
T Consensus 12 ~~~~~~l~vp-~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVP-PYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeC-cccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444555555 77777788877777664 5668899987 467678999999999999999999887754
No 154
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=61.98 E-value=5 Score=46.89 Aligned_cols=73 Identities=12% Similarity=0.038 Sum_probs=63.8
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
..+..-++|||++ ...+..+-++.+...+|-|..+.... |||..|..+.....|+..+....++|..+.++.-
T Consensus 36 ~~~~~~~vfv~~~-~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 36 PLPPRDTVFVGNI-SYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCCCceeEecch-hhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 3456678999999 88888999999999999999987665 9999999999999999998888899988887764
No 155
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=60.86 E-value=9.3 Score=37.78 Aligned_cols=67 Identities=13% Similarity=0.132 Sum_probs=44.9
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhc-cCCc---eeEEeecc------CCCceEEEEECCHHHHHHHHHhCCCceEcC
Q 006992 372 ASRQIYLTFPADSTFREEDVSNYFSI-YGPV---QDVRIPYQ------QKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (622)
Q Consensus 372 ~~rtIYVGnL~~~~~TEedLre~Fsq-FG~V---~dVrI~~D------ksRGFGFVtF~~~e~A~~Al~~mng~~I~G 439 (622)
...+|.|.+| +..+||+++.+..+. ++.- ..+.-..+ ..-.-|+|.|.+.+++..-...++|+.+.+
T Consensus 6 ~~~KvVIR~L-PP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 6 EGTKVVIRRL-PPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ---EEEEEEE--TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cCceEEEeCC-CCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 3469999999 999999999998777 6665 23321111 122349999999999999999999977743
No 156
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=57.83 E-value=16 Score=42.20 Aligned_cols=66 Identities=12% Similarity=-0.020 Sum_probs=48.8
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhc--cCCceeEEeeccCCCceEEEEECCHHHHHHHHHhC--CCceEcCeEEE
Q 006992 374 RQIYLTFPADSTFREEDVSNYFSI--YGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKG--NPHFVCDARVL 443 (622)
Q Consensus 374 rtIYVGnL~~~~~TEedLre~Fsq--FG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~m--ng~~I~GR~I~ 443 (622)
+-|.+.-| +.++-+|+|+.+|.- +-++.+|..-. .- ==||||++..+|+.|.+.+ .-++|-|+.|.
T Consensus 176 cIvilREI-pettp~e~Vk~lf~~encPk~iscefa~--N~-nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 176 CIVILREI-PETTPIEVVKALFKGENCPKVISCEFAH--ND-NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred eEEEEeec-CCCChHHHHHHHhccCCCCCceeeeeee--cC-ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 34555677 888889999999985 77888888765 22 2599999999999998765 23455565554
No 157
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=57.12 E-value=4.5 Score=41.74 Aligned_cols=21 Identities=52% Similarity=1.260 Sum_probs=18.4
Q ss_pred ccccc-cccccCCCCCCccCCC
Q 006992 233 PCLYF-ARGYCKNGSSCRFVHG 253 (622)
Q Consensus 233 pC~YF-akG~CK~G~sCry~Hg 253 (622)
-|.|| +.|.|-.|..|||+|.
T Consensus 208 ycryynangicgkgaacrfvhe 229 (377)
T KOG1492|consen 208 YCRYYNANGICGKGAACRFVHE 229 (377)
T ss_pred EEEEecCCCcccCCceeeeecc
Confidence 47776 6899999999999995
No 158
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=55.99 E-value=2.7 Score=43.44 Aligned_cols=72 Identities=29% Similarity=0.373 Sum_probs=56.9
Q ss_pred CCceEEEcC----CCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 372 ASRQIYLTF----PADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 372 ~~rtIYVGn----L~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
-.+|++.|+ | +..++++.+.+.|++-|+|+.+|+..+ +.|.++||++.-...+-.++....+...-=+++.+
T Consensus 79 ~q~~~r~G~shapl-d~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~~ 157 (267)
T KOG4454|consen 79 EQRTLRCGNSHAPL-DERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVTI 157 (267)
T ss_pred hhcccccCCCcchh-hhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCCCCccc
Confidence 346677777 7 778999999999999999999999885 78999999999888888887765544444344443
No 159
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=55.27 E-value=8.3 Score=46.35 Aligned_cols=77 Identities=18% Similarity=0.113 Sum_probs=64.1
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceE--cCeEEEEEeCc
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFV--CDARVLVKPYK 448 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I--~GR~I~Vk~Ak 448 (622)
+.-.+.++-+. .-..+-..|..+|++||.|.+++..+ .-..|.|.|...+.|-.|++++.|+.+ .|.+.+|..|+
T Consensus 296 plqp~~~~~nn-~v~~tSssL~~l~s~yg~v~s~wtlr--~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 296 PLQPKQSLENN-AVNLTSSSLATLCSDYGSVASAWTLR--DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred cCcchhhhhcc-cccchHHHHHHHHHhhcchhhheecc--cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 44456677777 66788899999999999999999877 445799999999999999999987765 68889998887
Q ss_pred cC
Q 006992 449 EK 450 (622)
Q Consensus 449 ~K 450 (622)
.-
T Consensus 373 ~~ 374 (1007)
T KOG4574|consen 373 TL 374 (1007)
T ss_pred cc
Confidence 53
No 160
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=42.53 E-value=58 Score=37.05 Aligned_cols=68 Identities=12% Similarity=0.191 Sum_probs=57.9
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcc-CCceeEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcC
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIY-GPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqF-G~V~dVrI~~D--ksRGFGFVtF~~~e~A~~Al~~mng~~I~G 439 (622)
...+.|+|-.+ |..+|-.||-.|...| -.|.+++|++| ..|=-..|+|.+.++|..-.+.+||..++.
T Consensus 72 ~~~~mLcilaV-P~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 72 SSSTMLCILAV-PAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCcEEEEEec-cccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 33788999999 8899999999998876 47889999997 456568899999999999999999987754
No 161
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=38.37 E-value=15 Score=39.69 Aligned_cols=29 Identities=34% Similarity=0.959 Sum_probs=24.2
Q ss_pred CCCCccccccccc-cccCCCCCCccCCCCC
Q 006992 227 SGLGWRPCLYFAR-GYCKNGSSCRFVHGGE 255 (622)
Q Consensus 227 ~~~~~kpC~YFak-G~CK~G~sCry~Hg~~ 255 (622)
..|--+||.-|.+ |+|.-|..|.|.||..
T Consensus 270 ~~frTePcinwe~sGyc~yg~Rc~F~hgd~ 299 (351)
T COG5063 270 QNFRTEPCINWEKSGYCPYGLRCCFKHGDD 299 (351)
T ss_pred cccccCCccchhhcccCccccccccccCCh
Confidence 3456699998886 8999999999999843
No 162
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=37.18 E-value=15 Score=39.85 Aligned_cols=23 Identities=22% Similarity=0.681 Sum_probs=19.5
Q ss_pred CccccccccccccCCCCCCccCCC
Q 006992 230 GWRPCLYFARGYCKNGSSCRFVHG 253 (622)
Q Consensus 230 ~~kpC~YFakG~CK~G~sCry~Hg 253 (622)
-+-=|+=|.||.|.|-| |||+|.
T Consensus 70 ~v~aC~Ds~kgrCsR~n-CkylHp 92 (331)
T KOG2494|consen 70 RVIACFDSQKGRCSREN-CKYLHP 92 (331)
T ss_pred eEEEEeccccCccCccc-ceecCC
Confidence 45569999999999966 999994
No 163
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=36.05 E-value=18 Score=38.75 Aligned_cols=26 Identities=42% Similarity=0.911 Sum_probs=22.8
Q ss_pred CccccccccccccCCCCCCccCCCCC
Q 006992 230 GWRPCLYFARGYCKNGSSCRFVHGGE 255 (622)
Q Consensus 230 ~~kpC~YFakG~CK~G~sCry~Hg~~ 255 (622)
.--+|++|-+|-|+.|..|.|+|+..
T Consensus 103 s~V~c~~~~~g~c~s~~~c~~lh~~d 128 (285)
T COG5084 103 SSVVCKFFLRGLCKSGFSCEFLHEYD 128 (285)
T ss_pred CCcccchhccccCcCCCccccccCCC
Confidence 34599999999999999999999743
No 164
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.41 E-value=1e+02 Score=36.16 Aligned_cols=73 Identities=15% Similarity=0.188 Sum_probs=57.0
Q ss_pred CCCceEEEcCCCCC-CCCHHHHHHHhhcc----CCceeEEeecc------------C---------------C-------
Q 006992 371 PASRQIYLTFPADS-TFREEDVSNYFSIY----GPVQDVRIPYQ------------Q---------------K------- 411 (622)
Q Consensus 371 ~~~rtIYVGnL~~~-~~TEedLre~FsqF----G~V~dVrI~~D------------k---------------s------- 411 (622)
..+++|-|.|+ +| .+.-+||--+|+.| |.|.+|.|-.- . +
T Consensus 172 ~~T~RLAVvNM-DWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 172 EETKRLAVVNM-DWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred cccceeeEecc-ccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 45788999999 88 57789999999976 68999987431 0 0
Q ss_pred --------C---------ceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 412 --------R---------MFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 412 --------R---------GFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
| =||.|+|.+.++|..+++..+|..+...-..+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~ 300 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKL 300 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccccee
Confidence 1 27999999999999999999998886544333
No 165
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=33.84 E-value=1.5e+02 Score=32.18 Aligned_cols=55 Identities=18% Similarity=0.160 Sum_probs=42.5
Q ss_pred CCCCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCH
Q 006992 366 AGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYP 422 (622)
Q Consensus 366 ~g~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~ 422 (622)
.|.......-|||+|| +.++.-.||+....+-|.+- .+|...-++|-+|+.|-+.
T Consensus 323 ~g~~a~~~~di~~~nl-~rd~rv~dlk~~lr~~~~~p-m~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 323 SGVEAGAKTDIKLTNL-SRDIRVKDLKSELRKRECTP-MSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred CcccCccccceeeccC-ccccchHHHHHHHHhcCCCc-eeEeeecCCcceeEecCCc
Confidence 3444556667999999 99999999999999887653 3444444788999999876
No 166
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=32.41 E-value=16 Score=37.75 Aligned_cols=21 Identities=48% Similarity=1.081 Sum_probs=17.9
Q ss_pred cccccccccccCCCCCCccCCC
Q 006992 232 RPCLYFARGYCKNGSSCRFVHG 253 (622)
Q Consensus 232 kpC~YFakG~CK~G~sCry~Hg 253 (622)
--|.||--|-|.| -+|||+|-
T Consensus 262 pacryfllgkcnn-pncryvhi 282 (377)
T KOG1492|consen 262 PACRYFLLGKCNN-PNCRYVHI 282 (377)
T ss_pred chhhhhhhccCCC-CCceEEEE
Confidence 3599999999987 56999994
No 167
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=31.96 E-value=60 Score=37.62 Aligned_cols=79 Identities=10% Similarity=0.082 Sum_probs=51.5
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhh-ccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEc----CeEEE
Q 006992 373 SRQIYLTFPADSTFREEDVSNYFS-IYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVC----DARVL 443 (622)
Q Consensus 373 ~rtIYVGnL~~~~~TEedLre~Fs-qFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~----GR~I~ 443 (622)
.+++-|.++ +...|-.-|.+.-. ..|.=.-+.++.| ...|||||.|.+++.+....++.||+..+ .+.+.
T Consensus 388 rtt~~ikni-pNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~ 466 (549)
T KOG4660|consen 388 RTTLMIKNI-PNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIAS 466 (549)
T ss_pred hhhhHhhcc-CchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeee
Confidence 445566666 55555544444422 2566566677766 36799999999999999999998876542 34445
Q ss_pred EEeCccCCC
Q 006992 444 VKPYKEKGK 452 (622)
Q Consensus 444 Vk~Ak~K~k 452 (622)
+.||+-.++
T Consensus 467 itYArIQGk 475 (549)
T KOG4660|consen 467 ITYARIQGK 475 (549)
T ss_pred eehhhhhch
Confidence 555554444
No 168
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=28.24 E-value=15 Score=40.81 Aligned_cols=64 Identities=13% Similarity=-0.053 Sum_probs=51.8
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEc
Q 006992 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVC 438 (622)
Q Consensus 373 ~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~ 438 (622)
.++|||++| ...+...++-+.|..+|+|...++-..-..-++-|.|........|+.. ++..+.
T Consensus 151 rRt~~v~sl-~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSL-ISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred Hhhhhhhcc-hhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHHh-cchhhh
Confidence 489999999 8889999999999999999988775532334666999999999999887 455443
No 169
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=27.72 E-value=24 Score=36.17 Aligned_cols=21 Identities=48% Similarity=1.168 Sum_probs=17.8
Q ss_pred ccc-cccccccCCCCCCccCCC
Q 006992 233 PCL-YFARGYCKNGSSCRFVHG 253 (622)
Q Consensus 233 pC~-YFakG~CK~G~sCry~Hg 253 (622)
.|+ |=.-|||--|.+|+|+|.
T Consensus 143 VCKdyk~TGYCGYGDsCKflH~ 164 (259)
T COG5152 143 VCKDYKETGYCGYGDSCKFLHD 164 (259)
T ss_pred cccchhhcccccCCchhhhhhh
Confidence 465 556899999999999995
No 170
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=27.41 E-value=78 Score=26.75 Aligned_cols=18 Identities=17% Similarity=0.517 Sum_probs=16.2
Q ss_pred HHHHHHhhccCCceeEEe
Q 006992 389 EDVSNYFSIYGPVQDVRI 406 (622)
Q Consensus 389 edLre~FsqFG~V~dVrI 406 (622)
.+||++|+..|+|.-+.|
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 679999999999998776
No 171
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=26.58 E-value=28 Score=37.01 Aligned_cols=28 Identities=43% Similarity=0.773 Sum_probs=22.6
Q ss_pred CCCcccccccc-ccccCC-CCCCccCCCCC
Q 006992 228 GLGWRPCLYFA-RGYCKN-GSSCRFVHGGE 255 (622)
Q Consensus 228 ~~~~kpC~YFa-kG~CK~-G~sCry~Hg~~ 255 (622)
.+.-..|.+|. .|.|+. |.+|+|.|+..
T Consensus 129 ~~kt~lc~~~~~~g~c~y~ge~crfah~~~ 158 (332)
T KOG1677|consen 129 RYKTPLCRSFRKSGTCKYRGEQCRFAHGLE 158 (332)
T ss_pred cccCCcceeeecCccccccCchhhhcCCcc
Confidence 45667898776 699999 99999998643
No 172
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=24.09 E-value=65 Score=32.65 Aligned_cols=78 Identities=10% Similarity=-0.045 Sum_probs=54.4
Q ss_pred CceEEEcCCCCCCCCHH----HHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCe-EEEEEeC
Q 006992 373 SRQIYLTFPADSTFREE----DVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDA-RVLVKPY 447 (622)
Q Consensus 373 ~rtIYVGnL~~~~~TEe----dLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR-~I~Vk~A 447 (622)
..+|.+..+....+++. ....+|.+|-+..-.++.+ +.++--|.|.+++.|..|..++....+.|. .++...+
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr--sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfa 87 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR--SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFA 87 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH--hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEc
Confidence 45677777744444443 3445566565554444444 666677789999999999999999999998 8888888
Q ss_pred ccCCC
Q 006992 448 KEKGK 452 (622)
Q Consensus 448 k~K~k 452 (622)
++...
T Consensus 88 Q~~~~ 92 (193)
T KOG4019|consen 88 QPGHP 92 (193)
T ss_pred cCCCc
Confidence 76543
No 173
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=23.52 E-value=37 Score=35.88 Aligned_cols=24 Identities=33% Similarity=0.739 Sum_probs=21.8
Q ss_pred CCccccccccccccCCCCCCccCC
Q 006992 229 LGWRPCLYFARGYCKNGSSCRFVH 252 (622)
Q Consensus 229 ~~~kpC~YFakG~CK~G~sCry~H 252 (622)
+--.+|-.|-++.|.+|.-|-|.|
T Consensus 150 ~rea~C~~~e~~~C~rG~~CnFmH 173 (260)
T KOG2202|consen 150 FREAICGQFERTECSRGGACNFMH 173 (260)
T ss_pred hhhhhhcccccccCCCCCcCcchh
Confidence 345699999999999999999999
No 174
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=22.40 E-value=32 Score=36.06 Aligned_cols=22 Identities=36% Similarity=0.976 Sum_probs=20.6
Q ss_pred ccccccccccCCCCCCccCCCC
Q 006992 233 PCLYFARGYCKNGSSCRFVHGG 254 (622)
Q Consensus 233 pC~YFakG~CK~G~sCry~Hg~ 254 (622)
.|-.|.-|.|..|..|.|.|+.
T Consensus 87 vcalF~~~~c~kg~~ckF~h~~ 108 (299)
T COG5252 87 VCALFLNKTCAKGDACKFAHGK 108 (299)
T ss_pred HHHHhccCccccCchhhhhcch
Confidence 6999999999999999999974
No 175
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=22.16 E-value=4.9e+02 Score=22.07 Aligned_cols=55 Identities=13% Similarity=0.155 Sum_probs=44.0
Q ss_pred CCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 385 TFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 385 ~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
.++-++++.-+..|+-. + |..| ..|| ||.|.+..+|+++....++..+.+.++.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~-~--I~~d-~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD-R--IRDD-RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc-e--EEec-CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 67889999999999754 2 3332 3455 89999999999999999999988887654
No 176
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=22.14 E-value=89 Score=29.83 Aligned_cols=40 Identities=18% Similarity=0.285 Sum_probs=34.4
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ 409 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D 409 (622)
.......++++++ ...+++.++...|..+|.+..+.+...
T Consensus 221 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 221 LLEKSDNLYVGNL-PLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred cccccceeecccc-ccccchhHHHHhccccccceeeeccCC
Confidence 3456778999999 899999999999999999988877663
No 177
>PF12186 AcylCoA_dehyd_C: Acyl-CoA dehydrogenase C terminal; InterPro: IPR020964 This entry represents the C-terminal alpha helical domain of some bacterial Acyl-CoA dehydrogenases. It is found in association with PF02770 from PFAM, PF00441 from PFAM, PF02771 from PFAM. There is a conserved ARRL sequence motif. ; PDB: 2OKU_A.
Probab=21.23 E-value=34 Score=32.06 Aligned_cols=15 Identities=40% Similarity=0.556 Sum_probs=12.0
Q ss_pred hhhHhhhhcccCChh
Q 006992 23 SKIMGLLLLQDHGEK 37 (622)
Q Consensus 23 skI~g~ll~qd~~e~ 37 (622)
-=|||||||||-++.
T Consensus 64 ~iims~LLl~dA~k~ 78 (114)
T PF12186_consen 64 HIIMSYLLLRDASKA 78 (114)
T ss_dssp HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHh
Confidence 358999999998876
No 178
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.62 E-value=34 Score=39.12 Aligned_cols=20 Identities=15% Similarity=0.046 Sum_probs=0.0
Q ss_pred ccccccccccCCCCCCccCC
Q 006992 233 PCLYFARGYCKNGSSCRFVH 252 (622)
Q Consensus 233 pC~YFakG~CK~G~sCry~H 252 (622)
||++|.||+|--|.-|-|+|
T Consensus 120 P~l~~~K~~e~~~D~~s~Lh 139 (667)
T KOG4791|consen 120 PQLRSVKKVESSEDVPSPLH 139 (667)
T ss_pred hHHHHhhhhhhhccccccCC
Done!