Query 006992
Match_columns 622
No_of_seqs 399 out of 1651
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 14:20:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006992.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006992hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u1l_A PRE-mRNA-splicing facto 99.9 1E-23 3.4E-28 212.6 9.1 90 362-454 123-233 (240)
2 4f25_A Polyadenylate-binding p 99.7 5E-18 1.7E-22 150.5 9.6 82 372-454 4-87 (115)
3 4fxv_A ELAV-like protein 1; RN 99.7 6.5E-18 2.2E-22 146.8 9.6 78 371-449 17-98 (99)
4 3s8s_A Histone-lysine N-methyl 99.7 2.4E-17 8.2E-22 146.2 13.0 79 371-450 4-86 (110)
5 2lxi_A RNA-binding protein 10; 99.7 7.1E-18 2.4E-22 144.1 8.2 80 373-453 1-86 (91)
6 2dgs_A DAZ-associated protein 99.7 3.6E-17 1.2E-21 140.0 10.6 86 367-454 4-93 (99)
7 2cqb_A Peptidyl-prolyl CIS-tra 99.7 4E-17 1.4E-21 140.2 10.8 87 367-454 6-96 (102)
8 3mdf_A Peptidyl-prolyl CIS-tra 99.7 3.5E-17 1.2E-21 135.6 9.8 80 368-448 2-85 (85)
9 1whw_A Hypothetical protein ri 99.7 6.5E-17 2.2E-21 138.1 11.6 83 370-453 5-91 (99)
10 2lkz_A RNA-binding protein 5; 99.7 3.8E-17 1.3E-21 141.9 9.3 81 368-449 4-94 (95)
11 3md1_A Nuclear and cytoplasmic 99.7 5.5E-17 1.9E-21 133.8 9.8 78 373-451 1-82 (83)
12 2e5h_A Zinc finger CCHC-type a 99.7 1.1E-16 3.7E-21 135.3 11.8 82 366-448 9-94 (94)
13 2cq3_A RNA-binding protein 9; 99.7 1.5E-16 5.1E-21 137.1 12.7 86 368-454 10-97 (103)
14 3bs9_A Nucleolysin TIA-1 isofo 99.7 5E-17 1.7E-21 135.2 9.0 79 371-450 4-86 (87)
15 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.7E-16 5.9E-21 136.7 12.5 84 369-453 11-96 (103)
16 1x5s_A Cold-inducible RNA-bind 99.7 5.3E-17 1.8E-21 139.4 9.1 86 367-453 6-95 (102)
17 4a8x_A RNA-binding protein wit 99.7 9.6E-17 3.3E-21 133.5 10.2 80 372-452 3-87 (88)
18 1x5u_A Splicing factor 3B subu 99.7 1.2E-16 4E-21 137.9 10.9 86 368-454 10-99 (105)
19 2dgx_A KIAA0430 protein; RRM d 99.7 1.4E-16 4.9E-21 136.4 11.3 81 371-452 7-92 (96)
20 2cq0_A Eukaryotic translation 99.7 1.3E-16 4.4E-21 137.4 10.9 83 370-453 12-98 (103)
21 1x5t_A Splicing factor 3B subu 99.7 1.2E-16 4E-21 135.6 10.4 83 371-454 3-90 (96)
22 1sjq_A Polypyrimidine tract-bi 99.7 6.1E-17 2.1E-21 144.2 9.0 83 370-455 13-97 (105)
23 2dgo_A Cytotoxic granule-assoc 99.7 1.8E-16 6.2E-21 139.1 11.8 85 369-454 11-99 (115)
24 1x4a_A Splicing factor, argini 99.7 1.7E-16 5.8E-21 138.3 11.4 84 369-453 18-102 (109)
25 2do4_A Squamous cell carcinoma 99.7 1.8E-16 6E-21 135.9 11.2 84 369-453 13-99 (100)
26 2dnz_A Probable RNA-binding pr 99.7 1.2E-16 4.3E-21 135.2 10.0 82 371-453 3-88 (95)
27 2wbr_A GW182, gawky, LD47780P; 99.7 1.3E-16 4.5E-21 138.4 10.1 76 370-448 4-79 (89)
28 1x4h_A RNA-binding protein 28; 99.7 2.2E-16 7.4E-21 137.3 11.5 85 369-454 11-105 (111)
29 2e5j_A Methenyltetrahydrofolat 99.7 9E-17 3.1E-21 137.5 8.8 83 368-452 14-96 (97)
30 2jvr_A Nucleolar protein 3; RN 99.7 1.4E-16 4.9E-21 142.4 10.4 82 369-451 24-106 (111)
31 2cpz_A CUG triplet repeat RNA- 99.7 1.3E-16 4.5E-21 140.2 10.0 84 369-453 21-108 (115)
32 2x1f_A MRNA 3'-END-processing 99.7 1.6E-16 5.5E-21 135.4 10.2 83 373-456 2-88 (96)
33 2dnm_A SRP46 splicing factor; 99.7 1.1E-16 3.9E-21 137.8 9.3 85 369-454 9-97 (103)
34 2err_A Ataxin-2-binding protei 99.7 1.6E-16 5.6E-21 139.5 10.2 83 368-451 24-108 (109)
35 1p27_B RNA-binding protein 8A; 99.7 1.2E-16 4.2E-21 138.0 9.1 82 370-452 20-105 (106)
36 2cpf_A RNA binding motif prote 99.7 2.2E-16 7.5E-21 134.6 10.4 82 371-453 3-91 (98)
37 1oo0_B CG8781-PA, drosophila Y 99.7 2.4E-16 8.3E-21 137.3 10.8 84 369-453 22-109 (110)
38 2dgp_A Bruno-like 4, RNA bindi 99.7 1.8E-16 6.3E-21 136.9 9.8 85 368-453 8-99 (106)
39 2ytc_A PRE-mRNA-splicing facto 99.7 3.2E-16 1.1E-20 130.1 10.7 78 368-448 7-85 (85)
40 2cpi_A CCR4-NOT transcription 99.7 1.8E-16 6.1E-21 139.5 9.7 83 369-452 11-103 (111)
41 2cqc_A Arginine/serine-rich sp 99.7 2.7E-16 9.3E-21 132.8 10.4 80 369-449 11-94 (95)
42 2dgv_A HnRNP M, heterogeneous 99.7 1.4E-16 4.8E-21 134.1 8.4 83 370-453 5-89 (92)
43 2dnh_A Bruno-like 5, RNA bindi 99.7 2.5E-16 8.5E-21 135.9 10.1 85 369-454 11-101 (105)
44 2ywk_A Putative RNA-binding pr 99.7 1.8E-16 6.2E-21 134.1 9.1 80 369-449 12-94 (95)
45 2d9p_A Polyadenylate-binding p 99.7 2.1E-16 7.2E-21 136.1 9.6 84 370-454 12-97 (103)
46 2dgw_A Probable RNA-binding pr 99.7 4.7E-16 1.6E-20 131.1 11.3 82 368-452 5-89 (91)
47 3p5t_L Cleavage and polyadenyl 99.7 3.7E-17 1.3E-21 138.3 4.5 79 374-453 2-86 (90)
48 2la4_A Nuclear and cytoplasmic 99.7 1.7E-16 5.9E-21 136.2 8.7 77 371-450 25-101 (101)
49 2dgt_A RNA-binding protein 30; 99.7 6.2E-16 2.1E-20 130.8 12.0 82 368-454 5-86 (92)
50 2cph_A RNA binding motif prote 99.7 3.4E-16 1.2E-20 135.2 10.5 85 368-453 10-100 (107)
51 3ucg_A Polyadenylate-binding p 99.7 3.5E-16 1.2E-20 130.6 10.1 78 372-451 5-86 (89)
52 2div_A TRNA selenocysteine ass 99.7 2.3E-16 8E-21 134.7 9.2 83 369-452 5-96 (99)
53 1s79_A Lupus LA protein; RRM, 99.7 1.1E-16 3.8E-21 140.5 7.3 77 371-449 9-88 (103)
54 1x4c_A Splicing factor, argini 99.7 8.3E-16 2.8E-20 134.3 12.7 81 370-454 12-97 (108)
55 2dh8_A DAZ-associated protein 99.7 2.1E-16 7.2E-21 136.6 8.6 84 369-454 12-99 (105)
56 2dnq_A RNA-binding protein 4B; 99.7 3.7E-16 1.3E-20 131.7 9.8 80 370-454 5-84 (90)
57 1u6f_A Tcubp1, RNA-binding pro 99.6 4.4E-16 1.5E-20 141.0 11.0 85 369-454 38-126 (139)
58 1x4d_A Matrin 3; structural ge 99.6 2E-16 6.9E-21 139.7 8.4 79 371-452 13-94 (102)
59 3ns6_A Eukaryotic translation 99.6 5.6E-17 1.9E-21 140.4 4.7 78 372-450 5-93 (100)
60 2cqd_A RNA-binding region cont 99.6 7.4E-16 2.5E-20 135.6 11.7 84 368-453 12-99 (116)
61 2rs2_A Musashi-1, RNA-binding 99.6 6E-16 2.1E-20 136.0 11.0 82 370-453 22-107 (109)
62 2cpj_A Non-POU domain-containi 99.6 4.4E-16 1.5E-20 133.4 9.9 83 368-453 10-92 (99)
63 2do0_A HnRNP M, heterogeneous 99.6 6.7E-16 2.3E-20 135.1 11.2 84 369-453 11-97 (114)
64 2cpe_A RNA-binding protein EWS 99.6 5E-16 1.7E-20 135.9 10.3 83 370-453 12-106 (113)
65 3n9u_C Cleavage and polyadenyl 99.6 2.3E-16 7.8E-21 148.2 8.5 80 371-451 53-138 (156)
66 1why_A Hypothetical protein ri 99.6 6.3E-16 2.2E-20 132.0 10.4 80 370-452 14-95 (97)
67 2cq1_A PTB-like protein L; RRM 99.6 6.8E-16 2.3E-20 135.6 10.9 81 371-454 13-95 (101)
68 2khc_A Testis-specific RNP-typ 99.6 4.9E-16 1.7E-20 137.0 9.9 79 369-448 36-118 (118)
69 3s7r_A Heterogeneous nuclear r 99.6 7E-16 2.4E-20 128.7 10.4 76 370-447 8-87 (87)
70 2cqp_A RNA-binding protein 12; 99.6 4E-16 1.4E-20 133.0 9.0 83 368-451 10-96 (98)
71 1x4g_A Nucleolysin TIAR; struc 99.6 6E-16 2E-20 135.0 10.3 80 371-453 23-102 (109)
72 3r27_A HnRNP L, heterogeneous 99.6 5.5E-16 1.9E-20 137.0 10.0 80 369-451 17-98 (100)
73 2dng_A Eukaryotic translation 99.6 7.9E-16 2.7E-20 132.8 10.8 81 370-453 12-96 (103)
74 2fy1_A RNA-binding motif prote 99.6 5.7E-16 1.9E-20 137.8 10.2 83 371-454 5-90 (116)
75 1nu4_A U1A RNA binding domain; 99.6 3.1E-16 1.1E-20 133.2 8.0 84 370-454 5-93 (97)
76 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 9.8E-16 3.4E-20 137.9 11.6 80 367-447 57-140 (140)
77 2dgu_A Heterogeneous nuclear r 99.6 1.1E-15 3.8E-20 132.1 11.3 80 370-454 8-87 (103)
78 1whx_A Hypothetical protein ri 99.6 2.3E-16 7.8E-21 139.4 7.0 80 370-452 7-86 (111)
79 1x4b_A Heterogeneous nuclear r 99.6 8.4E-16 2.9E-20 135.3 10.6 82 371-454 25-110 (116)
80 2dnp_A RNA-binding protein 14; 99.6 1E-15 3.5E-20 129.0 10.6 79 370-453 6-84 (90)
81 2jrs_A RNA-binding protein 39; 99.6 4E-16 1.4E-20 137.2 8.4 83 368-451 21-107 (108)
82 2m2b_A RNA-binding protein 10; 99.6 2.1E-16 7.1E-21 142.9 6.8 82 370-453 20-111 (131)
83 2ad9_A Polypyrimidine tract-bi 99.6 5.3E-16 1.8E-20 140.8 9.4 82 370-454 28-111 (119)
84 2nlw_A Eukaryotic translation 99.6 6.8E-16 2.3E-20 134.5 9.6 82 371-453 13-103 (105)
85 2kt5_A RNA and export factor-b 99.6 1.5E-15 5E-20 135.4 12.0 86 367-453 29-117 (124)
86 3ulh_A THO complex subunit 4; 99.6 7E-16 2.4E-20 133.5 9.6 80 368-448 24-106 (107)
87 2kxn_B Transformer-2 protein h 99.6 4.2E-16 1.4E-20 141.6 8.6 83 369-452 42-128 (129)
88 3d2w_A TAR DNA-binding protein 99.6 6.1E-16 2.1E-20 131.7 9.0 81 368-452 6-86 (89)
89 1wi8_A EIF-4B, eukaryotic tran 99.6 1.4E-15 4.6E-20 131.5 11.2 80 371-453 13-97 (104)
90 2dhg_A TRNA selenocysteine ass 99.6 4.1E-16 1.4E-20 134.3 7.9 82 371-453 7-93 (104)
91 2la6_A RNA-binding protein FUS 99.6 6E-16 2.1E-20 132.6 8.8 80 368-448 8-99 (99)
92 1x5p_A Negative elongation fac 99.6 2.6E-15 8.9E-20 128.4 12.7 79 370-453 12-90 (97)
93 2mss_A Protein (musashi1); RNA 99.6 3E-16 1E-20 127.5 6.4 71 375-447 1-75 (75)
94 3ex7_B RNA-binding protein 8A; 99.6 7.1E-16 2.4E-20 137.4 9.3 86 368-454 17-106 (126)
95 1p1t_A Cleavage stimulation fa 99.6 4E-16 1.4E-20 134.1 7.4 82 371-453 6-91 (104)
96 2cqg_A TDP-43, TAR DNA-binding 99.6 2.1E-15 7.2E-20 129.9 11.9 83 369-454 11-97 (103)
97 2hvz_A Splicing factor, argini 99.6 3.5E-16 1.2E-20 134.3 6.9 78 374-453 1-78 (101)
98 2a3j_A U1 small nuclear ribonu 99.6 8.3E-16 2.8E-20 140.3 9.7 82 371-453 27-113 (127)
99 1wex_A Hypothetical protein (r 99.6 6.2E-16 2.1E-20 136.4 8.5 81 370-453 12-94 (104)
100 2cq4_A RNA binding motif prote 99.6 4.9E-16 1.7E-20 136.4 7.8 78 371-450 23-104 (114)
101 2cpy_A RNA-binding protein 12; 99.6 8.9E-16 3E-20 135.6 9.4 80 369-450 11-94 (114)
102 2ek1_A RNA-binding protein 12; 99.6 3.9E-16 1.3E-20 132.1 6.7 79 370-449 12-94 (95)
103 2cqh_A IGF-II mRNA-binding pro 99.6 6.7E-16 2.3E-20 130.6 8.1 80 370-453 5-86 (93)
104 2dis_A Unnamed protein product 99.6 9.7E-16 3.3E-20 133.0 9.3 83 371-454 6-96 (109)
105 2kn4_A Immunoglobulin G-bindin 99.6 1.2E-15 4.2E-20 140.7 10.5 85 369-454 66-154 (158)
106 2j76_E EIF-4B, EIF4B, eukaryot 99.6 3.7E-16 1.3E-20 134.8 6.6 80 369-451 15-99 (100)
107 1wg5_A Heterogeneous nuclear r 99.6 9.3E-16 3.2E-20 133.4 9.2 81 369-451 11-95 (104)
108 2ki2_A SS-DNA binding protein 99.6 1.8E-16 6.3E-21 133.1 4.4 79 374-454 2-84 (90)
109 2xnq_A Nuclear polyadenylated 99.6 1.8E-15 6.2E-20 130.4 10.7 79 368-451 17-96 (97)
110 1uaw_A Mouse-musashi-1; RNP-ty 99.6 4.1E-16 1.4E-20 126.8 6.2 72 374-447 1-76 (77)
111 2jvo_A Nucleolar protein 3; nu 99.6 1.4E-15 4.7E-20 133.9 9.9 79 370-453 28-106 (108)
112 2fc9_A NCL protein; structure 99.6 1.7E-15 5.8E-20 130.0 10.2 82 368-453 10-94 (101)
113 3lqv_A PRE-mRNA branch site pr 99.6 8.8E-16 3E-20 134.7 8.5 79 371-450 6-85 (115)
114 2i2y_A Fusion protein consists 99.6 8.5E-16 2.9E-20 141.3 8.7 82 368-451 68-149 (150)
115 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.9E-15 6.3E-20 139.9 10.9 83 371-454 37-123 (156)
116 2jwn_A Embryonic polyadenylate 99.6 1.5E-15 5.2E-20 134.9 9.4 79 372-452 35-117 (124)
117 1x4e_A RNA binding motif, sing 99.6 3.4E-16 1.2E-20 130.1 4.6 77 371-448 3-83 (85)
118 1x4f_A Matrin 3; structural ge 99.6 8.3E-16 2.8E-20 138.2 7.4 80 371-453 23-105 (112)
119 2cpx_A Hypothetical protein FL 99.6 1.2E-15 4.2E-20 133.5 8.3 83 371-454 23-109 (115)
120 1fj7_A Nucleolin RBD1, protein 99.6 4.5E-16 1.5E-20 133.6 5.3 82 370-454 14-99 (101)
121 2cpd_A Apobec-1 stimulating pr 99.6 4.5E-15 1.5E-19 127.2 11.5 80 369-453 11-92 (99)
122 2db1_A Heterogeneous nuclear r 99.6 1.2E-15 4E-20 136.2 8.1 78 370-449 14-97 (118)
123 2krb_A Eukaryotic translation 99.6 6.5E-16 2.2E-20 128.0 5.8 71 373-444 1-80 (81)
124 2hgl_A HNRPF protein, heteroge 99.6 1.2E-15 4E-20 141.0 8.1 80 368-449 39-124 (136)
125 2kvi_A Nuclear polyadenylated 99.6 1.4E-15 4.8E-20 130.0 7.5 80 370-454 7-87 (96)
126 1wez_A HnRNP H', FTP-3, hetero 99.6 1.7E-15 5.7E-20 132.3 8.1 82 368-452 10-94 (102)
127 2lea_A Serine/arginine-rich sp 99.6 1.2E-15 4E-20 139.6 7.3 85 369-454 43-131 (135)
128 1wf1_A RNA-binding protein RAL 99.6 3.2E-15 1.1E-19 130.6 9.5 77 371-452 25-102 (110)
129 1fjc_A Nucleolin RBD2, protein 99.6 2.4E-15 8.1E-20 127.7 8.4 82 370-453 13-94 (96)
130 2dnn_A RNA-binding protein 12; 99.6 2.5E-15 8.5E-20 133.7 8.8 76 371-449 14-92 (109)
131 1wg1_A KIAA1579 protein, homol 99.6 3.5E-15 1.2E-19 125.6 9.3 77 371-451 3-79 (88)
132 2e44_A Insulin-like growth fac 99.6 3.1E-15 1.1E-19 127.0 9.0 81 370-451 12-93 (96)
133 4f02_A Polyadenylate-binding p 99.6 1.1E-15 3.8E-20 147.9 6.7 79 372-451 102-182 (213)
134 2cq2_A Hypothetical protein LO 99.6 3.8E-15 1.3E-19 134.4 9.2 78 371-451 23-107 (114)
135 1rk8_A CG8781-PA, CG8781-PA pr 99.6 4.8E-15 1.6E-19 138.9 10.0 85 369-454 68-156 (165)
136 1x5o_A RNA binding motif, sing 99.6 3.6E-15 1.2E-19 130.6 8.6 81 370-451 22-113 (114)
137 1iqt_A AUF1, heterogeneous nuc 99.6 1.2E-15 4.2E-20 123.7 5.1 71 375-447 1-75 (75)
138 2lmi_A GRSF-1, G-rich sequence 99.6 1.4E-15 4.6E-20 133.0 5.4 79 369-449 7-91 (107)
139 1wf0_A TDP-43, TAR DNA-binding 99.6 3.4E-15 1.2E-19 125.2 7.7 79 371-453 3-81 (88)
140 3egn_A RNA-binding protein 40; 99.6 4.6E-15 1.6E-19 135.3 9.0 84 371-455 43-135 (143)
141 2e5g_A U6 snRNA-specific termi 99.6 1.2E-14 4E-19 123.6 10.1 79 370-453 5-85 (94)
142 1sjr_A Polypyrimidine tract-bi 99.6 7.5E-15 2.6E-19 140.4 9.9 81 371-452 44-126 (164)
143 1wel_A RNA-binding protein 12; 99.6 1.3E-15 4.5E-20 136.2 4.3 80 370-451 22-105 (124)
144 2hzc_A Splicing factor U2AF 65 99.6 8.2E-15 2.8E-19 121.8 8.7 72 371-446 4-86 (87)
145 3q2s_C Cleavage and polyadenyl 99.6 2.9E-15 9.8E-20 148.8 7.1 78 372-450 67-150 (229)
146 2xs2_A Deleted in azoospermia- 99.6 3.2E-15 1.1E-19 128.5 6.1 81 371-454 7-90 (102)
147 2fc8_A NCL protein; structure 99.5 1.3E-14 4.4E-19 124.5 9.8 82 368-453 10-95 (102)
148 2lcw_A RNA-binding protein FUS 99.3 5.1E-16 1.7E-20 136.9 0.0 82 371-453 5-98 (116)
149 2bz2_A Negative elongation fac 99.5 1.2E-14 4.1E-19 130.8 8.8 78 371-453 37-114 (121)
150 3tyt_A Heterogeneous nuclear r 99.5 2.4E-14 8.1E-19 139.5 10.5 79 371-451 2-81 (205)
151 2dha_A FLJ20171 protein; RRM d 99.5 6.5E-15 2.2E-19 133.9 5.9 77 371-449 21-104 (123)
152 1b7f_A Protein (SXL-lethal pro 99.5 2.4E-14 8.1E-19 130.7 9.6 80 372-452 2-85 (168)
153 4f02_A Polyadenylate-binding p 99.5 2.2E-14 7.4E-19 138.9 9.8 80 371-451 13-96 (213)
154 1fxl_A Paraneoplastic encephal 99.5 2.7E-14 9.3E-19 129.6 9.9 79 373-452 2-84 (167)
155 2f3j_A RNA and export factor b 99.5 2.8E-14 9.7E-19 136.4 10.4 84 368-452 83-169 (177)
156 3beg_B Splicing factor, argini 99.5 9.9E-15 3.4E-19 129.4 6.7 77 371-451 14-95 (115)
157 2dnl_A Cytoplasmic polyadenyla 99.5 3E-14 1E-18 125.7 9.7 76 371-450 6-88 (114)
158 3md3_A Nuclear and cytoplasmic 99.5 2.2E-14 7.6E-19 130.0 8.8 78 374-452 1-81 (166)
159 2hgn_A Heterogeneous nuclear r 99.5 5E-15 1.7E-19 137.3 4.6 81 370-453 43-126 (139)
160 3md3_A Nuclear and cytoplasmic 99.5 4.5E-14 1.5E-18 128.0 9.9 80 369-449 83-166 (166)
161 1l3k_A Heterogeneous nuclear r 99.5 5.2E-14 1.8E-18 131.8 10.7 83 370-454 101-187 (196)
162 2hgm_A HNRPF protein, heteroge 99.5 1.3E-14 4.5E-19 132.7 6.3 76 371-449 40-120 (126)
163 2cjk_A Nuclear polyadenylated 99.5 2.2E-14 7.4E-19 131.1 7.7 78 372-451 86-167 (167)
164 3zzy_A Polypyrimidine tract-bi 99.5 6.3E-14 2.1E-18 129.2 10.4 80 371-452 26-108 (130)
165 2adc_A Polypyrimidine tract-bi 99.5 3.6E-14 1.2E-18 138.8 8.9 87 363-451 24-111 (229)
166 2e5i_A Heterogeneous nuclear r 99.5 1.6E-13 5.3E-18 125.4 12.4 77 373-452 25-104 (124)
167 2yh0_A Splicing factor U2AF 65 99.5 6.1E-14 2.1E-18 131.6 9.8 82 371-453 112-197 (198)
168 1l3k_A Heterogeneous nuclear r 99.5 6.3E-14 2.1E-18 131.3 9.8 82 369-452 9-94 (196)
169 2qfj_A FBP-interacting repress 99.5 6.4E-14 2.2E-18 133.2 9.0 82 371-453 123-208 (216)
170 2g4b_A Splicing factor U2AF 65 99.5 6E-14 2.1E-18 128.8 8.2 76 371-447 92-171 (172)
171 3pgw_A U1-A; protein-RNA compl 99.5 1.6E-13 5.5E-18 136.9 11.2 82 370-452 6-92 (282)
172 3pgw_S U1-70K; protein-RNA com 99.5 1.3E-13 4.6E-18 149.1 11.0 81 371-452 100-184 (437)
173 2qfj_A FBP-interacting repress 99.5 1.1E-13 3.7E-18 131.6 8.7 82 372-454 27-112 (216)
174 2dit_A HIV TAT specific factor 99.5 3.8E-13 1.3E-17 118.5 11.5 84 369-453 11-105 (112)
175 2pe8_A Splicing factor 45; RRM 99.4 2.4E-13 8.2E-18 120.0 10.0 79 371-449 6-93 (105)
176 2voo_A Lupus LA protein; RNA-b 99.4 1.7E-13 5.7E-18 132.6 9.8 76 372-449 108-186 (193)
177 3nmr_A Cugbp ELAV-like family 99.4 1.4E-13 4.7E-18 126.2 8.0 80 372-452 2-90 (175)
178 1qm9_A Polypyrimidine tract-bi 99.4 1.2E-13 4E-18 130.7 7.5 78 372-451 2-80 (198)
179 2j8a_A Histone-lysine N-methyl 99.4 2.3E-13 8E-18 125.9 9.2 74 374-447 3-93 (136)
180 3sde_A Paraspeckle component 1 99.4 8.1E-14 2.8E-18 139.1 6.6 79 372-451 95-180 (261)
181 2cjk_A Nuclear polyadenylated 99.4 1.6E-13 5.5E-18 125.3 8.0 76 372-450 2-81 (167)
182 1fje_B Nucleolin RBD12, protei 99.4 2E-13 6.8E-18 126.2 8.6 80 370-451 96-175 (175)
183 2diu_A KIAA0430 protein; struc 99.4 2.7E-13 9.1E-18 119.1 8.2 77 371-454 7-88 (96)
184 3pgw_A U1-A; protein-RNA compl 99.4 4.6E-13 1.6E-17 133.6 10.8 77 370-448 204-281 (282)
185 3nmr_A Cugbp ELAV-like family 99.4 2.3E-13 7.8E-18 124.7 7.9 76 371-447 93-174 (175)
186 1b7f_A Protein (SXL-lethal pro 99.4 3.9E-13 1.3E-17 122.6 8.8 77 370-447 86-168 (168)
187 3smz_A Protein raver-1, ribonu 99.4 5.6E-13 1.9E-17 133.1 10.2 87 370-457 181-271 (284)
188 1fxl_A Paraneoplastic encephal 99.4 5E-13 1.7E-17 121.3 7.9 76 371-447 86-167 (167)
189 2g4b_A Splicing factor U2AF 65 99.4 9.6E-13 3.3E-17 120.7 9.7 76 372-451 3-89 (172)
190 3sde_A Paraspeckle component 1 99.4 9.4E-13 3.2E-17 131.4 10.2 79 369-450 18-96 (261)
191 2yh0_A Splicing factor U2AF 65 99.4 1.1E-12 3.8E-17 123.0 10.1 79 371-453 2-91 (198)
192 2ghp_A U4/U6 snRNA-associated 99.4 1.1E-12 3.7E-17 131.5 10.0 80 370-451 207-292 (292)
193 1fje_B Nucleolin RBD12, protei 99.4 5.9E-13 2E-17 123.0 7.1 83 368-452 8-93 (175)
194 2d9o_A DNAJ (HSP40) homolog, s 99.4 3.5E-12 1.2E-16 112.1 11.1 82 369-453 6-93 (100)
195 1qm9_A Polypyrimidine tract-bi 99.3 1.3E-12 4.6E-17 123.4 7.2 78 371-450 118-197 (198)
196 3smz_A Protein raver-1, ribonu 99.3 3.8E-12 1.3E-16 127.0 10.1 81 371-452 93-177 (284)
197 2adc_A Polypyrimidine tract-bi 99.3 3E-12 1E-16 125.2 8.9 78 371-450 149-228 (229)
198 1jmt_A Splicing factor U2AF 35 99.3 6.5E-13 2.2E-17 116.8 3.4 70 377-447 19-103 (104)
199 2ghp_A U4/U6 snRNA-associated 99.3 4.7E-12 1.6E-16 126.8 9.3 81 372-453 116-200 (292)
200 3tyt_A Heterogeneous nuclear r 99.3 3.9E-12 1.3E-16 123.9 7.2 76 371-447 121-204 (205)
201 3v4m_A Splicing factor U2AF 65 99.3 1.1E-11 3.9E-16 109.1 8.4 79 371-449 3-96 (105)
202 3s6e_A RNA-binding protein 39; 99.2 1.6E-11 5.4E-16 110.3 9.1 78 371-448 5-91 (114)
203 3tht_A Alkylated DNA repair pr 99.2 1.4E-11 4.8E-16 130.1 9.9 76 370-448 15-97 (345)
204 3ue2_A Poly(U)-binding-splicin 99.2 1.6E-11 5.4E-16 110.8 7.4 78 372-449 19-108 (118)
205 2dnr_A Synaptojanin-1; RRM dom 98.9 5.5E-09 1.9E-13 91.0 8.8 75 371-450 5-86 (91)
206 1owx_A Lupus LA protein, SS-B, 98.7 5.1E-08 1.8E-12 88.9 8.6 75 371-448 16-94 (121)
207 3dxb_A Thioredoxin N-terminall 98.6 2.8E-08 9.5E-13 96.6 5.8 64 386-449 141-212 (222)
208 1ufw_A Synaptojanin 2; RNP dom 98.6 7.8E-08 2.7E-12 84.3 7.9 74 369-448 11-93 (95)
209 2l9w_A U4/U6 snRNA-associated- 97.5 0.00041 1.4E-08 62.6 9.7 72 372-446 20-96 (117)
210 2dhx_A Poly (ADP-ribose) polym 97.3 0.001 3.6E-08 59.1 9.9 77 371-453 6-87 (104)
211 2cqe_A KIAA1064 protein; CCCH 96.5 0.0016 5.4E-08 57.1 3.5 22 231-252 36-58 (98)
212 1wey_A Calcipressin 1; structu 96.3 0.0078 2.7E-07 53.5 7.2 75 372-449 4-83 (104)
213 2d9m_A Zinc finger CCCH-type d 96.3 0.0016 5.5E-08 53.9 2.6 24 230-253 19-42 (69)
214 1wwh_A Nucleoporin 35, nucleop 96.1 0.015 5.3E-07 52.8 8.0 72 372-448 23-95 (119)
215 2rhk_C Cleavage and polyadenyl 96.1 0.0013 4.6E-08 54.5 0.9 25 229-253 14-38 (72)
216 2d9n_A Cleavage and polyadenyl 96.0 0.0017 5.8E-08 54.3 1.1 24 230-253 9-32 (77)
217 1m9o_A Tristetraproline; Cys3H 95.7 0.0056 1.9E-07 50.4 3.1 26 228-253 9-35 (77)
218 3d2q_A Muscleblind-like protei 95.7 0.0028 9.4E-08 52.1 1.1 22 232-253 7-29 (70)
219 1i2t_A HYD protein; four alpha 95.7 0.007 2.4E-07 49.0 3.3 51 8-61 7-57 (61)
220 2cqe_A KIAA1064 protein; CCCH 95.2 0.0053 1.8E-07 53.8 1.2 24 229-252 11-34 (98)
221 3d2n_A Muscleblind-like protei 95.1 0.0073 2.5E-07 51.5 1.8 23 231-253 9-32 (83)
222 3p3d_A Nucleoporin 53; structu 95.1 0.029 9.8E-07 51.9 5.8 71 375-448 9-97 (132)
223 3d2q_A Muscleblind-like protei 95.0 0.0058 2E-07 50.2 0.9 23 230-253 41-63 (70)
224 1m9o_A Tristetraproline; Cys3H 95.0 0.0042 1.5E-07 51.1 0.0 23 231-253 50-73 (77)
225 2dyd_A Poly(A)-binding protein 94.7 0.012 4.2E-07 50.5 2.2 51 8-61 28-78 (85)
226 2e5s_A Otthump00000018578; ZF- 94.3 0.0093 3.2E-07 52.3 0.6 24 229-253 54-77 (98)
227 1ifw_A Polyadenylate-binding p 94.3 0.024 8.1E-07 49.4 3.1 53 8-63 26-80 (92)
228 2rpp_A Muscleblind-like protei 94.1 0.012 4E-07 51.0 0.8 23 231-253 17-40 (89)
229 3pq1_A Poly(A) RNA polymerase; 93.9 0.026 9E-07 61.8 3.3 56 373-431 53-108 (464)
230 2e5s_A Otthump00000018578; ZF- 93.9 0.0062 2.1E-07 53.4 -1.3 23 231-253 20-43 (98)
231 2kn4_A Immunoglobulin G-bindin 93.9 0.026 9E-07 51.2 2.7 33 403-435 2-36 (158)
232 1nmr_A Poly(A)-binding protein 93.8 0.016 5.4E-07 49.9 1.0 51 8-61 29-79 (85)
233 3kuj_A Polyadenylate-binding p 93.6 0.053 1.8E-06 46.9 4.0 52 9-63 27-78 (88)
234 3d2n_A Muscleblind-like protei 93.2 0.022 7.6E-07 48.5 0.9 23 230-253 42-64 (83)
235 2d9n_A Cleavage and polyadenyl 93.0 0.022 7.6E-07 47.5 0.6 23 231-254 38-61 (77)
236 2rhk_C Cleavage and polyadenyl 92.8 0.027 9.2E-07 46.6 0.9 24 230-254 43-67 (72)
237 1g9l_A Polyadenylate-binding p 92.5 0.053 1.8E-06 50.8 2.5 51 10-63 74-124 (144)
238 1whv_A Poly(A)-specific ribonu 92.3 0.28 9.7E-06 43.3 6.6 54 373-432 16-69 (100)
239 1uw4_A UPF3X; nonsense mediate 92.0 0.4 1.4E-05 41.5 7.3 65 374-439 2-72 (91)
240 2i2y_A Fusion protein consists 90.2 0.097 3.3E-06 47.3 1.7 40 410-450 11-51 (150)
241 2rpp_A Muscleblind-like protei 90.2 0.069 2.4E-06 46.1 0.6 23 230-253 50-72 (89)
242 3ctr_A Poly(A)-specific ribonu 89.6 0.33 1.1E-05 42.9 4.5 53 375-433 8-60 (101)
243 2l08_A Regulator of nonsense t 77.3 3.4 0.00012 36.2 5.4 68 371-439 7-80 (97)
244 2fc6_A Nuclear, target of EGR1 69.8 0.93 3.2E-05 35.2 -0.0 25 229-253 18-43 (50)
245 3d45_A Poly(A)-specific ribonu 65.8 14 0.00047 40.7 8.3 56 372-433 439-494 (507)
246 3u9g_A Zinc finger CCCH-type a 41.7 16 0.00056 36.5 3.4 23 230-253 174-196 (229)
247 3u9g_A Zinc finger CCCH-type a 37.9 10 0.00034 38.0 1.2 25 229-253 87-115 (229)
248 3v33_A Ribonuclease ZC3H12A; r 36.2 8.5 0.00029 38.4 0.4 23 228-252 189-211 (223)
249 3dve_B Voltage-dependent N-typ 29.8 10 0.00036 25.0 -0.1 14 21-34 1-14 (23)
250 3dvk_B Voltage-dependent R-typ 27.5 12 0.00042 24.7 -0.1 14 21-34 2-15 (23)
251 2g0c_A ATP-dependent RNA helic 23.7 47 0.0016 26.5 2.7 69 375-448 2-75 (76)
252 2rnl_A Amphiregulin; AR, color 22.3 20 0.00069 27.5 0.2 21 232-253 10-30 (50)
253 3bee_A Putative YFRE protein; 20.8 1.7E+02 0.0057 24.0 5.7 57 4-60 25-92 (93)
254 3e50_C Protransforming growth 20.6 23 0.00079 27.2 0.2 21 232-253 6-26 (50)
No 1
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.89 E-value=1e-23 Score=212.55 Aligned_cols=90 Identities=20% Similarity=0.256 Sum_probs=73.3
Q ss_pred cCCCCCCCCCCCceEEEcCCCCCCC---------CHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhC
Q 006992 362 INGSAGIVNPASRQIYLTFPADSTF---------REEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKG 432 (622)
Q Consensus 362 ~~g~~g~~~~~~rtIYVGnL~~~~~---------TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~m 432 (622)
.|++.+......++||||+| +..+ +|++|+++|++||+|++|+|+. +||||||+|.+.++|++|++.|
T Consensus 123 ~~~g~gs~~~~~rtLfVgnL-~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~--~kG~AFV~F~~~~~Ae~A~~am 199 (240)
T 3u1l_A 123 DMGGIGSFRKKNKTLYVGGI-DGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE--SKNCGFVKFKYQANAEFAKEAM 199 (240)
T ss_dssp --------CCCCCEEEEECT-TGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHHH
T ss_pred cccCcCccccCCceeecCCC-ChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC--CCCEEEEEeCCHHHHHHHHHHh
Confidence 35666778889999999999 7777 7999999999999999999998 8999999999999999999999
Q ss_pred CCceE------------cCeEEEEEeCccCCCCc
Q 006992 433 NPHFV------------CDARVLVKPYKEKGKVP 454 (622)
Q Consensus 433 ng~~I------------~GR~I~Vk~Ak~K~k~~ 454 (622)
+++.| .|+.|.|+||..+....
T Consensus 200 ~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp~ 233 (240)
T 3u1l_A 200 SNQTLLLPSDKEWDDRREGTGLLVKWANEDPDPA 233 (240)
T ss_dssp TTCCCCCTTSTTGGGGGGSCCCEEEECC------
T ss_pred CCCEEeccccccccccCCCCEEEEEEccCCCCHH
Confidence 99999 99999999998766543
No 2
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.74 E-value=5e-18 Score=150.50 Aligned_cols=82 Identities=21% Similarity=0.395 Sum_probs=75.0
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 006992 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (622)
Q Consensus 372 ~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D--ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~ 449 (622)
..++|||+|| ++++||++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.|+++.|+|++|+|.++++
T Consensus 4 ~~~~lfV~nL-p~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNL-DKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCC-CCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4678999999 999999999999999999999999987 4689999999999999999999999999999999999988
Q ss_pred CCCCc
Q 006992 450 KGKVP 454 (622)
Q Consensus 450 K~k~~ 454 (622)
+....
T Consensus 83 ~~~~~ 87 (115)
T 4f25_A 83 RKERE 87 (115)
T ss_dssp CCC--
T ss_pred ccccc
Confidence 76554
No 3
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.73 E-value=6.5e-18 Score=146.82 Aligned_cols=78 Identities=13% Similarity=0.241 Sum_probs=73.4
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
...++|||+|| ++++||++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|.|++|+|.+
T Consensus 17 ~~gt~lfV~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 17 FQGTNLIVNYL-PQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34578999999 999999999999999999999999986 5789999999999999999999999999999999999
Q ss_pred Ccc
Q 006992 447 YKE 449 (622)
Q Consensus 447 Ak~ 449 (622)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 976
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.73 E-value=2.4e-17 Score=146.17 Aligned_cols=79 Identities=14% Similarity=0.112 Sum_probs=74.3
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
+..++|||+|| ++++||++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|+|+.|.|.+
T Consensus 4 ~p~~~lfV~nL-~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARL-NDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECC-CCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45789999999 999999999999999999999999986 5799999999999999999999999999999999999
Q ss_pred CccC
Q 006992 447 YKEK 450 (622)
Q Consensus 447 Ak~K 450 (622)
+..+
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8644
No 5
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.72 E-value=7.1e-18 Score=144.06 Aligned_cols=80 Identities=20% Similarity=0.269 Sum_probs=73.8
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhccC-CceeEEeecc----CCCceEEEEECCHHHHHHHHHhC-CCceEcCeEEEEEe
Q 006992 373 SRQIYLTFPADSTFREEDVSNYFSIYG-PVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKG-NPHFVCDARVLVKP 446 (622)
Q Consensus 373 ~rtIYVGnL~~~~~TEedLre~FsqFG-~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~m-ng~~I~GR~I~Vk~ 446 (622)
+++|||+|| +.++||++|+++|++|| +|.+|+|++| ++||||||+|.+.++|++|++.| ++..|+|++|.|.+
T Consensus 1 S~~i~v~nL-p~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRML-PQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETC-CSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 478999999 99999999999999999 8999999986 68999999999999999999987 56689999999999
Q ss_pred CccCCCC
Q 006992 447 YKEKGKV 453 (622)
Q Consensus 447 Ak~K~k~ 453 (622)
+.++.+.
T Consensus 80 a~~~~~~ 86 (91)
T 2lxi_A 80 SDPKPKI 86 (91)
T ss_dssp CCSCCCC
T ss_pred cCCCCCC
Confidence 9987764
No 6
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.6e-17 Score=139.98 Aligned_cols=86 Identities=24% Similarity=0.381 Sum_probs=78.6
Q ss_pred CCCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEE
Q 006992 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (622)
Q Consensus 367 g~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I 442 (622)
+......++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++ |+++.|+|+.|
T Consensus 4 ~~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l 81 (99)
T 2dgs_A 4 GSSGSKSNKIFVGGI-PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKV 81 (99)
T ss_dssp CCCCSSCCEEEEESC-CSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBC
T ss_pred CCCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEE
Confidence 345567899999999 999999999999999999999999986 579999999999999999999 89999999999
Q ss_pred EEEeCccCCCCc
Q 006992 443 LVKPYKEKGKVP 454 (622)
Q Consensus 443 ~Vk~Ak~K~k~~ 454 (622)
.|.++.++....
T Consensus 82 ~V~~a~~~~~~~ 93 (99)
T 2dgs_A 82 EVKRAEPRDSKS 93 (99)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEECCCCcccC
Confidence 999999876643
No 7
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4e-17 Score=140.19 Aligned_cols=87 Identities=18% Similarity=0.259 Sum_probs=79.9
Q ss_pred CCCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEE
Q 006992 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (622)
Q Consensus 367 g~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I 442 (622)
+......++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|+|++|
T Consensus 6 ~~~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2cqb_A 6 SGMATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 84 (102)
T ss_dssp SCSCCCCSCEEEESC-CSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCcCCCCCEEEEeCC-CCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 355577899999999 999999999999999999999999886 579999999999999999999999999999999
Q ss_pred EEEeCccCCCCc
Q 006992 443 LVKPYKEKGKVP 454 (622)
Q Consensus 443 ~Vk~Ak~K~k~~ 454 (622)
.|.+++++....
T Consensus 85 ~V~~a~~~~~~~ 96 (102)
T 2cqb_A 85 RVNLAKPMRIKE 96 (102)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEeCCCCCCCC
Confidence 999998876543
No 8
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.70 E-value=3.5e-17 Score=135.63 Aligned_cols=80 Identities=20% Similarity=0.321 Sum_probs=74.3
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~ 443 (622)
+.....++|||+|| ++++++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|.
T Consensus 2 ~~~~~~~~l~V~nl-~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 80 (85)
T 3mdf_A 2 SMATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 80 (85)
T ss_dssp -CCCCSSEEEEECC-CTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEECC-CCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 34567899999999 999999999999999999999999876 5799999999999999999999999999999999
Q ss_pred EEeCc
Q 006992 444 VKPYK 448 (622)
Q Consensus 444 Vk~Ak 448 (622)
|.+++
T Consensus 81 v~~ak 85 (85)
T 3mdf_A 81 VNLAK 85 (85)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99985
No 9
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=6.5e-17 Score=138.12 Aligned_cols=83 Identities=27% Similarity=0.451 Sum_probs=77.5
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|+|++|.|.
T Consensus 5 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 5 SSGSGRLFVRNL-SYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCSCEEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 456789999999 999999999999999999999999886 588999999999999999999999999999999999
Q ss_pred eCccCCCC
Q 006992 446 PYKEKGKV 453 (622)
Q Consensus 446 ~Ak~K~k~ 453 (622)
+++++...
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99887654
No 10
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.70 E-value=3.8e-17 Score=141.95 Aligned_cols=81 Identities=17% Similarity=0.121 Sum_probs=73.3
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhccCC--ceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCc----eE
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGP--VQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPH----FV 437 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~--V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~----~I 437 (622)
.....-.||||+|| ++.+||++|+++|++||. |.+|+|++| ++||||||+|.+.++|++|++.||+. .|
T Consensus 4 ~~~~~m~tlfV~nL-~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i 82 (95)
T 2lkz_A 4 HHHHHMDTIILRNI-APHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI 82 (95)
T ss_dssp CSSCCCCEEEEESC-CTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE
T ss_pred ccCCccCEEEEeCC-CCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE
Confidence 34466789999999 999999999999999995 779999987 68999999999999999999999875 69
Q ss_pred cCeEEEEEeCcc
Q 006992 438 CDARVLVKPYKE 449 (622)
Q Consensus 438 ~GR~I~Vk~Ak~ 449 (622)
+||+|.|.+|+.
T Consensus 83 ~Gr~i~V~~Aks 94 (95)
T 2lkz_A 83 DGKTIGVDFAKS 94 (95)
T ss_dssp TTEEEEEEECCC
T ss_pred CCEEEEEEEccC
Confidence 999999999874
No 11
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.69 E-value=5.5e-17 Score=133.84 Aligned_cols=78 Identities=10% Similarity=0.165 Sum_probs=73.5
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCc
Q 006992 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (622)
Q Consensus 373 ~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak 448 (622)
+.+|||+|| +.++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.|++..|+|++|.|.+++
T Consensus 1 t~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVGDL-NVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp CEEEEEECC-CTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CeEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 368999999 999999999999999999999999976 569999999999999999999999999999999999998
Q ss_pred cCC
Q 006992 449 EKG 451 (622)
Q Consensus 449 ~K~ 451 (622)
++.
T Consensus 80 ~~~ 82 (83)
T 3md1_A 80 KLE 82 (83)
T ss_dssp CCC
T ss_pred cCC
Confidence 875
No 12
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=135.27 Aligned_cols=82 Identities=17% Similarity=0.242 Sum_probs=75.9
Q ss_pred CCCCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeE
Q 006992 366 AGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDAR 441 (622)
Q Consensus 366 ~g~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~ 441 (622)
.+...+..++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|++
T Consensus 9 ~~~~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 87 (94)
T 2e5h_A 9 SGGLAPSKSTVYVSNL-PFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRV 87 (94)
T ss_dssp CCSCCCCTTSEEEESC-CTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEE
T ss_pred CCCCCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 3455677899999999 999999999999999999999999886 57899999999999999999999999999999
Q ss_pred EEEEeCc
Q 006992 442 VLVKPYK 448 (622)
Q Consensus 442 I~Vk~Ak 448 (622)
|.|.+|+
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999985
No 13
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=137.07 Aligned_cols=86 Identities=20% Similarity=0.293 Sum_probs=79.1
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D--ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
......++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ .+||||||+|.+.++|++|++.|+++.|+|+.|.|.
T Consensus 10 ~~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 10 ESKSTPKRLHVSNI-PFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CCSCCCCEEEEESC-CTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999 999999999999999999999999986 469999999999999999999999999999999999
Q ss_pred eCccCCCCc
Q 006992 446 PYKEKGKVP 454 (622)
Q Consensus 446 ~Ak~K~k~~ 454 (622)
++.++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cq3_A 89 NATARVMTN 97 (103)
T ss_dssp ECCSSCCCC
T ss_pred EcccCCCCC
Confidence 998876543
No 14
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.69 E-value=5e-17 Score=135.24 Aligned_cols=79 Identities=11% Similarity=0.245 Sum_probs=72.1
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
...++|||+|| +..+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|+|++|.|.+
T Consensus 4 ~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVGDL-SPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp --CEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCceEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 45789999999 999999999999999999999999886 4789999999999999999999999999999999999
Q ss_pred CccC
Q 006992 447 YKEK 450 (622)
Q Consensus 447 Ak~K 450 (622)
++++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9876
No 15
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.7e-16 Score=136.68 Aligned_cols=84 Identities=18% Similarity=0.184 Sum_probs=77.7
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D--ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
.....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ .+||||||+|.+.++|++|++.|+++.|.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 11 DDGQPRTLYVGNL-SRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CSCCCCEEEEESC-CTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCC-CccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3466799999999 999999999999999999999999986 5789999999999999999999999999999999999
Q ss_pred CccCCCC
Q 006992 447 YKEKGKV 453 (622)
Q Consensus 447 Ak~K~k~ 453 (622)
++++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9886654
No 16
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.3e-17 Score=139.39 Aligned_cols=86 Identities=20% Similarity=0.248 Sum_probs=79.3
Q ss_pred CCCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEE
Q 006992 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (622)
Q Consensus 367 g~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I 442 (622)
+......++|||+|| ++++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|++|
T Consensus 6 ~~~~~~~~~l~v~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 1x5s_A 6 SGMASDEGKLFVGGL-SFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 84 (102)
T ss_dssp CCCCCCCSEEEEESC-CTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCC
T ss_pred CCCCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 345577899999999 999999999999999999999999986 579999999999999999999999999999999
Q ss_pred EEEeCccCCCC
Q 006992 443 LVKPYKEKGKV 453 (622)
Q Consensus 443 ~Vk~Ak~K~k~ 453 (622)
+|.+++++...
T Consensus 85 ~v~~a~~~~~~ 95 (102)
T 1x5s_A 85 RVDQAGKSSDN 95 (102)
T ss_dssp EEEEEECCCCC
T ss_pred EEEECCCCCCC
Confidence 99999887654
No 17
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.69 E-value=9.6e-17 Score=133.51 Aligned_cols=80 Identities=11% Similarity=0.255 Sum_probs=74.7
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccC-----CCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQ-----KRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 372 ~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~Dk-----sRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
..++|||+|| ++++|+++|+++|++||+|.+|+|+.++ ++|||||+|.+.++|++|++.||+..|+|+.|.|.+
T Consensus 3 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRL-TRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 4689999999 9999999999999999999999998863 899999999999999999999999999999999999
Q ss_pred CccCCC
Q 006992 447 YKEKGK 452 (622)
Q Consensus 447 Ak~K~k 452 (622)
+.+...
T Consensus 82 a~~~~~ 87 (88)
T 4a8x_A 82 VLAPWP 87 (88)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 976543
No 18
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=137.93 Aligned_cols=86 Identities=19% Similarity=0.223 Sum_probs=78.9
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~ 443 (622)
......++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.|+++.|+|+.|.
T Consensus 10 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 10 SERNQDATVYVGGL-DEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCTTTEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred ccCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34467799999999 999999999999999999999999886 5899999999999999999999999999999999
Q ss_pred EEeCccCCCCc
Q 006992 444 VKPYKEKGKVP 454 (622)
Q Consensus 444 Vk~Ak~K~k~~ 454 (622)
|.+++++.+..
T Consensus 89 v~~a~~~~~~~ 99 (105)
T 1x5u_A 89 VNKASAHNKNL 99 (105)
T ss_dssp EEETTTTSCCC
T ss_pred EEECCCCCcCC
Confidence 99998876643
No 19
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=136.40 Aligned_cols=81 Identities=10% Similarity=0.087 Sum_probs=75.2
Q ss_pred CCCceEEEcCCCCCCCCHHHHH----HHhhccCCceeEEeeccC-CCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 371 PASRQIYLTFPADSTFREEDVS----NYFSIYGPVQDVRIPYQQ-KRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLr----e~FsqFG~V~dVrI~~Dk-sRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
...++|||+|| ++.+++++|+ ++|++||+|.+|+|+.|+ .||||||+|.+.++|++|++.||+..|+|++|+|.
T Consensus 7 ~~~~~l~V~nL-~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 7 GNGADVQVSNI-DYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SSCEEEEEESC-CTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCEEEEECC-CCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45679999999 9999999999 999999999999999873 39999999999999999999999999999999999
Q ss_pred eCccCCC
Q 006992 446 PYKEKGK 452 (622)
Q Consensus 446 ~Ak~K~k 452 (622)
+++++..
T Consensus 86 ~a~~~~~ 92 (96)
T 2dgx_A 86 LATGASG 92 (96)
T ss_dssp ECCCSSC
T ss_pred EcCCCCC
Confidence 9987654
No 20
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=137.44 Aligned_cols=83 Identities=18% Similarity=0.184 Sum_probs=77.4
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.|+++.|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 12 ADDNATIRVTNL-SEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CSSSEEEEEESC-CTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 456799999999 999999999999999999999999886 578999999999999999999999999999999999
Q ss_pred eCccCCCC
Q 006992 446 PYKEKGKV 453 (622)
Q Consensus 446 ~Ak~K~k~ 453 (622)
+++++...
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99887654
No 21
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=135.59 Aligned_cols=83 Identities=17% Similarity=0.308 Sum_probs=77.1
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeE-Eeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDV-RIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dV-rI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
...++|||+|| ++.+|+++|+++|++||+|.+| +|+.| ++||||||+|.+.++|++|++.||++.|+|+.|.|.
T Consensus 3 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNL-DPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECC-CTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45789999999 9999999999999999999999 99886 579999999999999999999999999999999999
Q ss_pred eCccCCCCc
Q 006992 446 PYKEKGKVP 454 (622)
Q Consensus 446 ~Ak~K~k~~ 454 (622)
++.++....
T Consensus 82 ~a~~~~~~~ 90 (96)
T 1x5t_A 82 YAFKKDSKG 90 (96)
T ss_dssp ESCCCCCCC
T ss_pred EecccCCCC
Confidence 998877653
No 22
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.1e-17 Score=144.18 Aligned_cols=83 Identities=13% Similarity=0.101 Sum_probs=75.8
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCC--CceEcCeEEEEEeC
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN--PHFVCDARVLVKPY 447 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mn--g~~I~GR~I~Vk~A 447 (622)
....++|||+|| ++++||++|+++|++||+|.+|+|+. .||||||+|.+.++|++|++.|+ +..|+|++|+|.++
T Consensus 13 ~~~~~~LfV~nL-p~~vte~dL~~lF~~fG~V~~v~i~~--~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 13 GVPSRVIHIRKL-PIDVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCCCCEEEECSC-CTTSCHHHHHHHHHHHCCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 466899999999 99999999999999999999999998 58999999999999999999775 58999999999999
Q ss_pred ccCCCCch
Q 006992 448 KEKGKVPD 455 (622)
Q Consensus 448 k~K~k~~~ 455 (622)
+++.....
T Consensus 90 ~~~~~~~~ 97 (105)
T 1sjq_A 90 NHKELKTD 97 (105)
T ss_dssp SSSSCCCT
T ss_pred CCCCCCcc
Confidence 88776553
No 23
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.68 E-value=1.8e-16 Score=139.09 Aligned_cols=85 Identities=14% Similarity=0.272 Sum_probs=78.4
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
.....++|||+|| ++.+|+++|+++|++||.|.+|+|+.+ ++||||||+|.+.++|++|++.|+++.|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 11 DTSNHFHVFVGDL-SPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CSTTCEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3467889999999 999999999999999999999999986 46899999999999999999999999999999999
Q ss_pred EeCccCCCCc
Q 006992 445 KPYKEKGKVP 454 (622)
Q Consensus 445 k~Ak~K~k~~ 454 (622)
.+++++....
T Consensus 90 ~~a~~~~~~~ 99 (115)
T 2dgo_A 90 NWATRKPPAP 99 (115)
T ss_dssp EESSCCCCCS
T ss_pred EEccCCCCCC
Confidence 9999877654
No 24
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.7e-16 Score=138.26 Aligned_cols=84 Identities=18% Similarity=0.240 Sum_probs=77.7
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D-ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
.....++|||+|| ++++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|+.|.|.++
T Consensus 18 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 18 AGNNDCRIYVGNL-PPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCCSSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 3456789999999 999999999999999999999999886 57999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 006992 448 KEKGKV 453 (622)
Q Consensus 448 k~K~k~ 453 (622)
+++.+.
T Consensus 97 ~~~~~~ 102 (109)
T 1x4a_A 97 RSGRGT 102 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 887654
No 25
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=135.93 Aligned_cols=84 Identities=10% Similarity=0.146 Sum_probs=77.5
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
.....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.|++..|+|+.|.|.
T Consensus 13 ~~~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGL-PFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456789999999 999999999999999999999999986 578999999999999999999999999999999999
Q ss_pred eCccCCCC
Q 006992 446 PYKEKGKV 453 (622)
Q Consensus 446 ~Ak~K~k~ 453 (622)
+++++...
T Consensus 92 ~a~~~~~~ 99 (100)
T 2do4_A 92 ISNSGPSS 99 (100)
T ss_dssp ECCCCSCC
T ss_pred ECCCCCCC
Confidence 99887653
No 26
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=135.16 Aligned_cols=82 Identities=17% Similarity=0.262 Sum_probs=76.7
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
...++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|+|++|+|.+
T Consensus 3 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGSL-HFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 45789999999 999999999999999999999999986 5799999999999999999999999999999999999
Q ss_pred CccCCCC
Q 006992 447 YKEKGKV 453 (622)
Q Consensus 447 Ak~K~k~ 453 (622)
++++...
T Consensus 82 a~~~~~~ 88 (95)
T 2dnz_A 82 VTERLDG 88 (95)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9887654
No 27
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.67 E-value=1.3e-16 Score=138.43 Aligned_cols=76 Identities=8% Similarity=0.054 Sum_probs=72.5
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCc
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak 448 (622)
...+.-|||||| ++.+||++|+++|.+||+|.+|+|+. +||||||+|.++++|++|++.||+..+.||.|+|+.|.
T Consensus 4 ~~~~~wL~VgNL-~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 4 AWGSSWLLLKNL-TAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCCEEEEECC-CTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CCccceEEEeCC-CccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 356788999999 99999999999999999999999988 99999999999999999999999999999999999993
No 28
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.2e-16 Score=137.31 Aligned_cols=85 Identities=13% Similarity=0.192 Sum_probs=78.3
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCC------CceEc
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGN------PHFVC 438 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mn------g~~I~ 438 (622)
.....++|||+|| ++.+|+++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.|+ ++.|+
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 11 DVTEGKTVFIRNL-SFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred cCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 3456789999999 999999999999999999999999986 579999999999999999999999 99999
Q ss_pred CeEEEEEeCccCCCCc
Q 006992 439 DARVLVKPYKEKGKVP 454 (622)
Q Consensus 439 GR~I~Vk~Ak~K~k~~ 454 (622)
|+.|.|.++.++....
T Consensus 90 g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEAA 105 (111)
T ss_dssp SCEEEEECCCCCCCCC
T ss_pred CEEEEEEECCCCccCC
Confidence 9999999998876543
No 29
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=9e-17 Score=137.48 Aligned_cols=83 Identities=13% Similarity=0.154 Sum_probs=77.0
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
......++|||+|| ++.+|+++|+++|++||.|. ++|+.+++||||||+|.+.++|++|++.||+..|+|++|.|.++
T Consensus 14 ~~~~~~~~l~V~nL-~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 14 EGAPLAADVYVGNL-PRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp SSSCCCCEEEEECC-CTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCCCCEEEEeCC-CCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 44566889999999 99999999999999999997 78888889999999999999999999999999999999999999
Q ss_pred ccCCC
Q 006992 448 KEKGK 452 (622)
Q Consensus 448 k~K~k 452 (622)
+++.+
T Consensus 92 ~~~~~ 96 (97)
T 2e5j_A 92 RQQRD 96 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88764
No 30
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.67 E-value=1.4e-16 Score=142.35 Aligned_cols=82 Identities=10% Similarity=-0.034 Sum_probs=74.6
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccC-CceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYG-PVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG-~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
..+...+|||+|| ++++|+++|+++|++|| +|..|+|+.+++||||||+|.+.++|++|++.||+..|+|+.|.|.++
T Consensus 24 ~p~~~~~l~VgnL-p~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 24 LPAKRYRITMKNL-PEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp -CCCCEEEEEECS-SCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3456789999999 99999999999999999 999999987779999999999999999999999999999999999998
Q ss_pred ccCC
Q 006992 448 KEKG 451 (622)
Q Consensus 448 k~K~ 451 (622)
....
T Consensus 103 ~~~p 106 (111)
T 2jvr_A 103 DNPP 106 (111)
T ss_dssp CC--
T ss_pred CCCC
Confidence 7543
No 31
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.67 E-value=1.3e-16 Score=140.21 Aligned_cols=84 Identities=18% Similarity=0.348 Sum_probs=77.5
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
.....++|||+|| ++++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|++|+|
T Consensus 21 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 21 EGPEGANLFIYHL-PQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCSTTCCEEEESC-CSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3456789999999 999999999999999999999999986 57899999999999999999999999999999999
Q ss_pred EeCccCCCC
Q 006992 445 KPYKEKGKV 453 (622)
Q Consensus 445 k~Ak~K~k~ 453 (622)
.+++++...
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpz_A 100 QLKRSKNDS 108 (115)
T ss_dssp ECCCCSCCC
T ss_pred EEcCCCCcC
Confidence 999887654
No 32
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.67 E-value=1.6e-16 Score=135.43 Aligned_cols=83 Identities=17% Similarity=0.170 Sum_probs=77.1
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCc
Q 006992 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (622)
Q Consensus 373 ~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak 448 (622)
+++|||+|| +..+++++|+++|++||.|.+|+|+.+ ++||||||+|.+.++|++|++.|++..|+|+.|.|.++.
T Consensus 2 ~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSI-PYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 579999999 999999999999999999999999986 569999999999999999999999999999999999999
Q ss_pred cCCCCchH
Q 006992 449 EKGKVPDK 456 (622)
Q Consensus 449 ~K~k~~~~ 456 (622)
++......
T Consensus 81 ~~~~~~~~ 88 (96)
T 2x1f_A 81 NSDISGVS 88 (96)
T ss_dssp CSSGGGHH
T ss_pred CCCCCCcc
Confidence 88765543
No 33
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=137.78 Aligned_cols=85 Identities=18% Similarity=0.114 Sum_probs=78.0
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
.....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|+|+.|.|
T Consensus 9 ~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 9 DVDGMITLKVDNL-TYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp CCSCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCeEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 3456799999999 999999999999999999999999985 57999999999999999999999999999999999
Q ss_pred EeCccCCCCc
Q 006992 445 KPYKEKGKVP 454 (622)
Q Consensus 445 k~Ak~K~k~~ 454 (622)
.+++++....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2dnm_A 88 QVARYGRRDL 97 (103)
T ss_dssp EECSSCCSCC
T ss_pred EECCcCCCCC
Confidence 9998766543
No 34
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.6e-16 Score=139.49 Aligned_cols=83 Identities=20% Similarity=0.305 Sum_probs=76.9
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D--ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
......++|||+|| +..+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.|++..|+|++|.|.
T Consensus 24 ~~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 24 ENKSQPKRLHVSNI-PFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp SCTTCCCEEEEESC-CTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCCEEEEECC-CCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34467899999999 999999999999999999999999986 579999999999999999999999999999999999
Q ss_pred eCccCC
Q 006992 446 PYKEKG 451 (622)
Q Consensus 446 ~Ak~K~ 451 (622)
+++++.
T Consensus 103 ~a~~~~ 108 (109)
T 2err_A 103 NATARV 108 (109)
T ss_dssp ECCCSC
T ss_pred ECCCCc
Confidence 998763
No 35
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.2e-16 Score=138.03 Aligned_cols=82 Identities=13% Similarity=0.204 Sum_probs=76.2
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.|+++.|+|+.|.|.
T Consensus 20 ~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 20 SVEGWILFVTGV-HEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp BTTBEEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 356789999999 999999999999999999999999986 468999999999999999999999999999999999
Q ss_pred eCccCCC
Q 006992 446 PYKEKGK 452 (622)
Q Consensus 446 ~Ak~K~k 452 (622)
++.++..
T Consensus 99 ~a~~~~~ 105 (106)
T 1p27_B 99 WCFVRGP 105 (106)
T ss_dssp ESEESSC
T ss_pred eecCCCC
Confidence 9988754
No 36
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.2e-16 Score=134.61 Aligned_cols=82 Identities=22% Similarity=0.295 Sum_probs=75.9
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc-------CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-------QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D-------ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~ 443 (622)
...++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.|+++.|+|++|.
T Consensus 3 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNL-NFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 45789999999 999999999999999999999999864 4589999999999999999999999999999999
Q ss_pred EEeCccCCCC
Q 006992 444 VKPYKEKGKV 453 (622)
Q Consensus 444 Vk~Ak~K~k~ 453 (622)
|.+++++...
T Consensus 82 V~~a~~~~~~ 91 (98)
T 2cpf_A 82 VRISERATKP 91 (98)
T ss_dssp EECSSCSSCC
T ss_pred EEEccCCCCC
Confidence 9999887654
No 37
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.67 E-value=2.4e-16 Score=137.26 Aligned_cols=84 Identities=12% Similarity=0.169 Sum_probs=77.4
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
.....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|+..|++..|+|++|.|
T Consensus 22 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 22 RSVEGWILFVTSI-HEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CBTTBEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 3456789999999 999999999999999999999999876 57899999999999999999999999999999999
Q ss_pred EeCccCCCC
Q 006992 445 KPYKEKGKV 453 (622)
Q Consensus 445 k~Ak~K~k~ 453 (622)
.++.++...
T Consensus 101 ~~a~~~~~~ 109 (110)
T 1oo0_B 101 DWCFVKGPK 109 (110)
T ss_dssp EESEESSCC
T ss_pred EEcccCCCC
Confidence 999887653
No 38
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.66 E-value=1.8e-16 Score=136.92 Aligned_cols=85 Identities=12% Similarity=0.232 Sum_probs=78.0
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceE---cCe
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFV---CDA 440 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I---~GR 440 (622)
......++|||+|| ++.+|+++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.|++..+ .|+
T Consensus 8 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 8 MKDHDAIKLFIGQI-PRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp CCCTTCEEEEEESC-CTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 44567899999999 999999999999999999999999986 5799999999999999999999999998 999
Q ss_pred EEEEEeCccCCCC
Q 006992 441 RVLVKPYKEKGKV 453 (622)
Q Consensus 441 ~I~Vk~Ak~K~k~ 453 (622)
+|.|.++.++...
T Consensus 87 ~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 87 PIQVKPADSESRG 99 (106)
T ss_dssp CCEEEECCCCSCC
T ss_pred eEEEEECCccccc
Confidence 9999999887654
No 39
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.2e-16 Score=130.06 Aligned_cols=78 Identities=19% Similarity=0.289 Sum_probs=73.0
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhC-CCceEcCeEEEEEe
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKG-NPHFVCDARVLVKP 446 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~m-ng~~I~GR~I~Vk~ 446 (622)
......++|||+|| +..+|+++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.| ++..++|++|.|.+
T Consensus 7 ~~~~~~~~l~V~~l-~~~~t~~~l~~~f~~~G~i~~~~~~~--~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 7 GEDKTITTLYVGGL-GDTITETDLRNHFYQFGEIRTITVVQ--RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp CSCSSCCCEEEECC-TTTSCHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCCCCccEEEEcCC-CCCCCHHHHHHHHHhCCCEeEEEEEC--CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 33467799999999 99999999999999999999999998 7899999999999999999999 99999999999999
Q ss_pred Cc
Q 006992 447 YK 448 (622)
Q Consensus 447 Ak 448 (622)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 40
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.8e-16 Score=139.45 Aligned_cols=83 Identities=14% Similarity=0.142 Sum_probs=76.3
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHH---HHhhccCCceeEEeecc-------CCCceEEEEECCHHHHHHHHHhCCCceEc
Q 006992 369 VNPASRQIYLTFPADSTFREEDVS---NYFSIYGPVQDVRIPYQ-------QKRMFGFVTFVYPETVKIILAKGNPHFVC 438 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLr---e~FsqFG~V~dVrI~~D-------ksRGFGFVtF~~~e~A~~Al~~mng~~I~ 438 (622)
.....++|||+|| ++++++++|+ ++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|+
T Consensus 11 r~~~~~~l~V~nL-p~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 11 RVVQKNLVFVVGL-SQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCSSCEEEEEE-CTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred cccCCCEEEEECC-CCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 3456789999999 9999999999 99999999999999976 35699999999999999999999999999
Q ss_pred CeEEEEEeCccCCC
Q 006992 439 DARVLVKPYKEKGK 452 (622)
Q Consensus 439 GR~I~Vk~Ak~K~k 452 (622)
|+.|+|.+|+++..
T Consensus 90 gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 90 GRTLKASLGTTKYC 103 (111)
T ss_dssp TEEEEEESCCCCSC
T ss_pred CEEEEEEecccccc
Confidence 99999999988763
No 41
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.7e-16 Score=132.82 Aligned_cols=80 Identities=25% Similarity=0.263 Sum_probs=74.5
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
.....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|++|.|
T Consensus 11 ~~~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 11 NPDPNCCLGVFGL-SLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp SCCGGGCEEEESC-CSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3466789999999 999999999999999999999999875 57899999999999999999999999999999999
Q ss_pred EeCcc
Q 006992 445 KPYKE 449 (622)
Q Consensus 445 k~Ak~ 449 (622)
.+++.
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99874
No 42
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.66 E-value=1.4e-16 Score=134.06 Aligned_cols=83 Identities=17% Similarity=0.152 Sum_probs=77.1
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D--ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.|++..|+|++|.|.++
T Consensus 5 ~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 5 SSGACQIFVRNL-PFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSCCEEEECSC-CTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 456789999999 999999999999999999999999875 57999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 006992 448 KEKGKV 453 (622)
Q Consensus 448 k~K~k~ 453 (622)
+++...
T Consensus 84 ~~~~~~ 89 (92)
T 2dgv_A 84 RNASGP 89 (92)
T ss_dssp SCCSSC
T ss_pred CCCCCC
Confidence 887654
No 43
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.66 E-value=2.5e-16 Score=135.87 Aligned_cols=85 Identities=14% Similarity=0.203 Sum_probs=77.9
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcC---eEE
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCD---ARV 442 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~G---R~I 442 (622)
.....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|.| +.|
T Consensus 11 ~~~~~~~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGML-NKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 3456899999999 999999999999999999999999986 568999999999999999999999999998 999
Q ss_pred EEEeCccCCCCc
Q 006992 443 LVKPYKEKGKVP 454 (622)
Q Consensus 443 ~Vk~Ak~K~k~~ 454 (622)
.|.+++++....
T Consensus 90 ~V~~a~~~~~~~ 101 (105)
T 2dnh_A 90 VVKFADTDKESG 101 (105)
T ss_dssp EEEESCSSCCCS
T ss_pred EEEECccCcccC
Confidence 999999877643
No 44
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.66 E-value=1.8e-16 Score=134.15 Aligned_cols=80 Identities=26% Similarity=0.338 Sum_probs=74.4
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
.....++|||+|| ++.+++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|+|++|.|.
T Consensus 12 ~~~~~~~l~v~nl-p~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNL-EARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 3456789999999 999999999999999999999999986 568999999999999999999999999999999999
Q ss_pred eCcc
Q 006992 446 PYKE 449 (622)
Q Consensus 446 ~Ak~ 449 (622)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9864
No 45
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.1e-16 Score=136.12 Aligned_cols=84 Identities=20% Similarity=0.345 Sum_probs=78.2
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D--ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|.|.++
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 12 RYQVVNLYVKNL-DDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CSSCCCEEEECC-CTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 356889999999 999999999999999999999999976 78999999999999999999999999999999999999
Q ss_pred ccCCCCc
Q 006992 448 KEKGKVP 454 (622)
Q Consensus 448 k~K~k~~ 454 (622)
+++....
T Consensus 91 ~~~~~~~ 97 (103)
T 2d9p_A 91 QRKEERQ 97 (103)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9877653
No 46
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.7e-16 Score=131.06 Aligned_cols=82 Identities=20% Similarity=0.179 Sum_probs=75.9
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
......++|||+|| ++++|+++|+++|++| .|.+|+|+.+ ++||||||+|.+.++|++|++ |++..|+|+.|.|
T Consensus 5 ~~~~~~~~l~v~nL-p~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v 81 (91)
T 2dgw_A 5 SSGTTCHTVKLRGA-PFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCCCEEEEECC-CSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEE
T ss_pred CCCCCccEEEEECC-CCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEE
Confidence 44567899999999 9999999999999999 9999999986 579999999999999999999 9999999999999
Q ss_pred EeCccCCC
Q 006992 445 KPYKEKGK 452 (622)
Q Consensus 445 k~Ak~K~k 452 (622)
.++.++.+
T Consensus 82 ~~a~~~~~ 89 (91)
T 2dgw_A 82 FREKSGPS 89 (91)
T ss_dssp EEESSCCC
T ss_pred EECCcCCC
Confidence 99988754
No 47
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.66 E-value=3.7e-17 Score=138.29 Aligned_cols=79 Identities=13% Similarity=0.123 Sum_probs=68.0
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhccC--CceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 374 RQIYLTFPADSTFREEDVSNYFSIYG--PVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 374 rtIYVGnL~~~~~TEedLre~FsqFG--~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
.+|||+|| ++++|+++|+++|++|| +|.+|+|+.| ++||||||+|.+.++|++|++.||+..|+|+.|.|.++
T Consensus 2 ~~l~V~nL-~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNL-TWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESC-CTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCC-CCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 47999999 99999999999999999 9999999986 67999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 006992 448 KEKGKV 453 (622)
Q Consensus 448 k~K~k~ 453 (622)
.+....
T Consensus 81 ~~~~~~ 86 (90)
T 3p5t_L 81 NKLEHH 86 (90)
T ss_dssp ------
T ss_pred CCCccc
Confidence 876544
No 48
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.7e-16 Score=136.20 Aligned_cols=77 Identities=14% Similarity=0.112 Sum_probs=73.2
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCccC
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~K 450 (622)
...++|||+|| +..+|+++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.||+..|+|++|+|.+++++
T Consensus 25 ~~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 25 PRVTTAYIGNI-PHFATEADLIPLFQNFGFILDFKHYP--EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SSCCEEEEESC-CTTCCHHHHHHHHHTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCEEEEcCC-CcccCHHHHHHHHHhCCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 45689999999 99999999999999999999999996 8999999999999999999999999999999999999864
No 49
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=6.2e-16 Score=130.80 Aligned_cols=82 Identities=17% Similarity=0.178 Sum_probs=75.2
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
......++|||+|| ++.+|+++|+++|++||+|.+|+|++ +||||+|.+.++|++|++.||++.|.|+.|.|.++
T Consensus 5 ~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 5 SSGKASTKLHVGNI-SPTCTNQELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCCCSSEEEEEESC-CSSCCHHHHHHHHHTTSCCCEEEECS----SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 34567899999999 99999999999999999999999985 59999999999999999999999999999999999
Q ss_pred ccCCCCc
Q 006992 448 KEKGKVP 454 (622)
Q Consensus 448 k~K~k~~ 454 (622)
+++....
T Consensus 80 ~~~~~~~ 86 (92)
T 2dgt_A 80 TSRLRTA 86 (92)
T ss_dssp SCCCSCC
T ss_pred cCCCCCC
Confidence 8876543
No 50
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3.4e-16 Score=135.20 Aligned_cols=85 Identities=19% Similarity=0.331 Sum_probs=78.0
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc-----CCCceEEEEECCHHHHHHHHHhC-CCceEcCeE
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-----QKRMFGFVTFVYPETVKIILAKG-NPHFVCDAR 441 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D-----ksRGFGFVtF~~~e~A~~Al~~m-ng~~I~GR~ 441 (622)
......++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.| |++.|.|+.
T Consensus 10 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 10 PKKQTTSKILVRNI-PFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp CCSSCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred ccCCCCCEEEEeCC-CCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 34467899999999 999999999999999999999999875 47999999999999999999999 999999999
Q ss_pred EEEEeCccCCCC
Q 006992 442 VLVKPYKEKGKV 453 (622)
Q Consensus 442 I~Vk~Ak~K~k~ 453 (622)
|.|.+++++...
T Consensus 89 l~v~~a~~~~~~ 100 (107)
T 2cph_A 89 LVLEWADSEVTV 100 (107)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEeCCCCCCC
Confidence 999999887654
No 51
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.65 E-value=3.5e-16 Score=130.64 Aligned_cols=78 Identities=22% Similarity=0.321 Sum_probs=72.8
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 372 ~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
..++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|+ .|+++.|.|+.|.|.++
T Consensus 5 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 5 DARSIYVGNV-DYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HHTEEEEESC-CTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred cCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 3689999999 999999999999999999999999976 57999999999999999999 89999999999999999
Q ss_pred ccCC
Q 006992 448 KEKG 451 (622)
Q Consensus 448 k~K~ 451 (622)
+++.
T Consensus 83 ~~~~ 86 (89)
T 3ucg_A 83 RTNR 86 (89)
T ss_dssp TTTS
T ss_pred cCCC
Confidence 7653
No 52
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.3e-16 Score=134.66 Aligned_cols=83 Identities=18% Similarity=0.142 Sum_probs=76.5
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCce-eEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeE--
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQ-DVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDAR-- 441 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~-dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~-- 441 (622)
.....++|||+|| ++.+|+++|+++|++||+|. +|+|+.| ++||||||+|.+.++|++|++.||+..|.|+.
T Consensus 5 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 5 SSGMAASLWMGDL-EPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp CCSSSSEEEECSC-CTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCCCccEEEEeCC-CCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 3456899999999 99999999999999999999 9999986 57899999999999999999999999999999
Q ss_pred --EEEEeCccCCC
Q 006992 442 --VLVKPYKEKGK 452 (622)
Q Consensus 442 --I~Vk~Ak~K~k 452 (622)
|+|.++++...
T Consensus 84 ~~l~v~~a~~~~~ 96 (99)
T 2div_A 84 KRFKLNYATYSGP 96 (99)
T ss_dssp EECCEEETTCCSS
T ss_pred eeEEEeecCCCCC
Confidence 99999987654
No 53
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.1e-16 Score=140.51 Aligned_cols=77 Identities=14% Similarity=0.156 Sum_probs=71.9
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
...++|||||| ++++|+++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++ ++++.|+|+.|.|.++
T Consensus 9 ~~~~~lfV~~L-p~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGF-PTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECC-CTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECC-CCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 45789999999 999999999999999999999999986 689999999999999999999 7999999999999986
Q ss_pred cc
Q 006992 448 KE 449 (622)
Q Consensus 448 k~ 449 (622)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 53
No 54
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=8.3e-16 Score=134.35 Aligned_cols=81 Identities=15% Similarity=0.052 Sum_probs=75.5
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcC-----eEEEE
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCD-----ARVLV 444 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~G-----R~I~V 444 (622)
....++|||+|| ++++|+++|+++|++||+|.+|+|+.| |||||+|.+.++|++|++.||++.|+| +.|.|
T Consensus 12 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 12 RRSENRVVVSGL-PPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp CSCCCEEEEESC-CSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 356789999999 999999999999999999999999985 999999999999999999999999999 99999
Q ss_pred EeCccCCCCc
Q 006992 445 KPYKEKGKVP 454 (622)
Q Consensus 445 k~Ak~K~k~~ 454 (622)
.+++++....
T Consensus 88 ~~a~~~~~~~ 97 (108)
T 1x4c_A 88 KVDGPRSPSY 97 (108)
T ss_dssp EESSCCSCCC
T ss_pred EeCCCCCCCC
Confidence 9999876543
No 55
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.1e-16 Score=136.56 Aligned_cols=84 Identities=32% Similarity=0.473 Sum_probs=77.7
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
.....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++. +++.|+|+.|.|
T Consensus 12 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 12 GADEIGKLFVGGL-DWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CSSSSSEECCBSC-CTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 3467899999999 999999999999999999999999986 5789999999999999999999 999999999999
Q ss_pred EeCccCCCCc
Q 006992 445 KPYKEKGKVP 454 (622)
Q Consensus 445 k~Ak~K~k~~ 454 (622)
.++.++....
T Consensus 90 ~~a~~~~~~~ 99 (105)
T 2dh8_A 90 KPCTPRGMQP 99 (105)
T ss_dssp CCSCCSSCCT
T ss_pred EEccCCCCCC
Confidence 9999877654
No 56
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.7e-16 Score=131.70 Aligned_cols=80 Identities=16% Similarity=0.256 Sum_probs=74.8
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~ 449 (622)
....++|||+|| ++++|+++|+++|++||+|.+|+|+ ||||||+|.+.++|++|++.|++..|+|++|.|.++++
T Consensus 5 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 5 SSGMVKLFIGNL-PREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SSCCEEEEEESC-CSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCeEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 467899999999 9999999999999999999999998 69999999999999999999999999999999999988
Q ss_pred CCCCc
Q 006992 450 KGKVP 454 (622)
Q Consensus 450 K~k~~ 454 (622)
+.+..
T Consensus 80 ~~~~~ 84 (90)
T 2dnq_A 80 KSKAS 84 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 77643
No 57
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.65 E-value=4.4e-16 Score=141.00 Aligned_cols=85 Identities=24% Similarity=0.371 Sum_probs=78.6
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
.....++|||+|| ++++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|++|+|
T Consensus 38 ~~~~~~~l~V~nL-p~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 38 EPDVLRNLMVNYI-PTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CTTTTSEEEEESC-STTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3466799999999 999999999999999999999999986 46999999999999999999999999999999999
Q ss_pred EeCccCCCCc
Q 006992 445 KPYKEKGKVP 454 (622)
Q Consensus 445 k~Ak~K~k~~ 454 (622)
.+++++....
T Consensus 117 ~~a~~~~~~~ 126 (139)
T 1u6f_A 117 ALAASGHQRP 126 (139)
T ss_dssp EESSCCCCCC
T ss_pred EECCCCCCCC
Confidence 9999877654
No 58
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2e-16 Score=139.65 Aligned_cols=79 Identities=11% Similarity=0.053 Sum_probs=72.1
Q ss_pred CCCceEEEcCCCCC-CCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCC--ceEcCeEEEEEeC
Q 006992 371 PASRQIYLTFPADS-TFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNP--HFVCDARVLVKPY 447 (622)
Q Consensus 371 ~~~rtIYVGnL~~~-~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng--~~I~GR~I~Vk~A 447 (622)
...++|||+|| ++ ++||++|+++|++||+|.+|+|+. .||||||+|.+.++|+.|++.|++ ..|+||+|+|.++
T Consensus 13 ~p~~~l~V~nL-p~~~~te~dL~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 13 ETRRVVHIMDF-QRGKNLRYQLLQLVEPFGVISNHLILN--KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp CCCCEEEEESC-CCSSSHHHHHHTTTGGGSCEEEEEECS--SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred CCCCEEEEeCC-CCCcCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 46789999999 98 999999999999999999999998 679999999999999999998874 5699999999999
Q ss_pred ccCCC
Q 006992 448 KEKGK 452 (622)
Q Consensus 448 k~K~k 452 (622)
+.+..
T Consensus 90 ~~~~~ 94 (102)
T 1x4d_A 90 QKYKR 94 (102)
T ss_dssp CCCTT
T ss_pred CCCCC
Confidence 86543
No 59
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.65 E-value=5.6e-17 Score=140.36 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=73.3
Q ss_pred CCceEEEcCCCCC------CCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcC-e
Q 006992 372 ASRQIYLTFPADS------TFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCD-A 440 (622)
Q Consensus 372 ~~rtIYVGnL~~~------~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~G-R 440 (622)
..++|||+|| ++ ++++++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.||+..|.| +
T Consensus 5 ~~~~vfV~nL-p~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 5 SDQYIVVNGA-PVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp GGGEEEEESC-CCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred cCcEEEEeCC-CcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3689999999 89 9999999999999999999999986 579999999999999999999999999999 9
Q ss_pred EEEEEeCccC
Q 006992 441 RVLVKPYKEK 450 (622)
Q Consensus 441 ~I~Vk~Ak~K 450 (622)
.|.|.++.++
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999999764
No 60
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.4e-16 Score=135.65 Aligned_cols=84 Identities=15% Similarity=0.221 Sum_probs=76.5
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~ 443 (622)
......++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.+++ .|+|++|.
T Consensus 12 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 12 QKDTTFTKIFVGGL-PYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCSCSSSEEEEECC-CSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred cCCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 34467899999999 999999999999999999999999986 5899999999999999999999997 89999999
Q ss_pred EEeCccCCCC
Q 006992 444 VKPYKEKGKV 453 (622)
Q Consensus 444 Vk~Ak~K~k~ 453 (622)
|.++..+.+.
T Consensus 90 V~~a~~~~~~ 99 (116)
T 2cqd_A 90 VNLAYLGAKP 99 (116)
T ss_dssp EEESTTTCCC
T ss_pred EEEcccCCCc
Confidence 9999876544
No 61
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.65 E-value=6e-16 Score=136.04 Aligned_cols=82 Identities=21% Similarity=0.306 Sum_probs=73.2
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
....++|||+|| ++++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.+ ++.|+|+.|.|.
T Consensus 22 ~~~~~~lfV~nL-p~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 22 GSSGCKMFIGGL-SWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp ----CCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 356789999999 999999999999999999999999986 57999999999999999999996 599999999999
Q ss_pred eCccCCCC
Q 006992 446 PYKEKGKV 453 (622)
Q Consensus 446 ~Ak~K~k~ 453 (622)
++.++...
T Consensus 100 ~a~~~~~~ 107 (109)
T 2rs2_A 100 VAFPRRAQ 107 (109)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99887654
No 62
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=4.4e-16 Score=133.44 Aligned_cols=83 Identities=14% Similarity=0.197 Sum_probs=76.6
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
......++|||++| ++.+|+++|+++|++||+|.+|+|+. .||||||+|.+.++|++|++.|+++.|.|++|.|.++
T Consensus 10 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~~~~--~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 10 KTFTQRSRLFVGNL-PPDITEEEMRKLFEKYGKAGEVFIHK--DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCCCCTTEEEEESC-CTTCCHHHHHHHTSTTCCCSEEEEET--TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CcCCCCCEEEEeCC-CCCCCHHHHHHHHhhcCCeEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 33467789999999 99999999999999999999999997 7999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 006992 448 KEKGKV 453 (622)
Q Consensus 448 k~K~k~ 453 (622)
+++...
T Consensus 87 ~~~~~~ 92 (99)
T 2cpj_A 87 CHSASL 92 (99)
T ss_dssp SCCSCC
T ss_pred CCCCCC
Confidence 886543
No 63
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=6.7e-16 Score=135.06 Aligned_cols=84 Identities=18% Similarity=0.136 Sum_probs=76.5
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
.....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANL-DYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 3456789999999 999999999999999999999999986 568999999999999999999999999999999999
Q ss_pred eCccCCCC
Q 006992 446 PYKEKGKV 453 (622)
Q Consensus 446 ~Ak~K~k~ 453 (622)
++......
T Consensus 90 ~a~~~~~~ 97 (114)
T 2do0_A 90 MDERALPK 97 (114)
T ss_dssp ECSCCCCC
T ss_pred EcccCCCC
Confidence 99765443
No 64
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5e-16 Score=135.92 Aligned_cols=83 Identities=16% Similarity=0.210 Sum_probs=77.2
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCce--------eEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceE
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQ--------DVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFV 437 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~--------dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I 437 (622)
....++|||+|| ++.+|+++|+++|++||.|. .|+|+.| ++||||||+|.+.++|++|++.||++.|
T Consensus 12 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 12 DSDNSAIYVQGL-NDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCEEEEECC-CTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEcCC-CCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 456799999999 99999999999999999999 6999886 5799999999999999999999999999
Q ss_pred cCeEEEEEeCccCCCC
Q 006992 438 CDARVLVKPYKEKGKV 453 (622)
Q Consensus 438 ~GR~I~Vk~Ak~K~k~ 453 (622)
.|+.|.|.+++++...
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999887664
No 65
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.64 E-value=2.3e-16 Score=148.24 Aligned_cols=80 Identities=13% Similarity=0.148 Sum_probs=73.4
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccC--CceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYG--PVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG--~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
...++|||||| ++++||++|+++|++|| +|.+|+|+.| ++||||||+|.+.++|++|++.||++.|+|+.|.|
T Consensus 53 ~~~~~lfVgnL-p~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V 131 (156)
T 3n9u_C 53 NRRAAVYVGSF-SWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDV 131 (156)
T ss_dssp ---CEEEEECC-CTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEE
Confidence 45689999999 99999999999999999 9999999986 67999999999999999999999999999999999
Q ss_pred EeCccCC
Q 006992 445 KPYKEKG 451 (622)
Q Consensus 445 k~Ak~K~ 451 (622)
.++.++.
T Consensus 132 ~~a~~~~ 138 (156)
T 3n9u_C 132 RPATRQN 138 (156)
T ss_dssp EECCHHH
T ss_pred EEcCCCc
Confidence 9998754
No 66
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=6.3e-16 Score=131.98 Aligned_cols=80 Identities=11% Similarity=0.144 Sum_probs=75.1
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEc--CeEEEEEeC
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVC--DARVLVKPY 447 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~--GR~I~Vk~A 447 (622)
....++|||+|| ++.+|+++|+++|++||+|.+|+|+. .||||||+|.+.++|++|++.||+..|. |+.|.|.++
T Consensus 14 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 14 ANPTTRLWVGGL-GPNTSLAALAREFDRFGSIRTIDHVK--GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCCCSCEEEECC-CSSCCHHHHHHHHHTTSCEEEEEECS--SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEeC--CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 456789999999 99999999999999999999999998 5899999999999999999999999999 999999999
Q ss_pred ccCCC
Q 006992 448 KEKGK 452 (622)
Q Consensus 448 k~K~k 452 (622)
+++..
T Consensus 91 ~~~~~ 95 (97)
T 1why_A 91 KSGPS 95 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98764
No 67
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.8e-16 Score=135.58 Aligned_cols=81 Identities=11% Similarity=0.091 Sum_probs=74.1
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhC--CCceEcCeEEEEEeCc
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKG--NPHFVCDARVLVKPYK 448 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~m--ng~~I~GR~I~Vk~Ak 448 (622)
+..++|||+|| ++++||++|+++|++||.|.+|+|+. .||||||+|.+.++|++|++.| ++..|.|++|+|.+++
T Consensus 13 ~p~~~l~V~nL-p~~~te~~L~~~F~~fG~v~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 13 APSRVLHIRKL-PGEVTETEVIALGLPFGKVTNILMLK--GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp SCCSEEEEESC-CTTCCHHHHHHTTTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 56789999999 99999999999999999999999998 5999999999999999999976 5788999999999998
Q ss_pred cCCCCc
Q 006992 449 EKGKVP 454 (622)
Q Consensus 449 ~K~k~~ 454 (622)
.+....
T Consensus 90 ~~~~~~ 95 (101)
T 2cq1_A 90 HKELKT 95 (101)
T ss_dssp CSSCCC
T ss_pred cccCcC
Confidence 776543
No 68
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.64 E-value=4.9e-16 Score=136.96 Aligned_cols=79 Identities=22% Similarity=0.404 Sum_probs=73.2
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
.....++|||+|| ++++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|++|+|
T Consensus 36 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 36 EGPEGCNLFIYHL-PQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCSEEEEEECS-CTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3456789999999 999999999999999999999999876 57999999999999999999999999999999999
Q ss_pred EeCc
Q 006992 445 KPYK 448 (622)
Q Consensus 445 k~Ak 448 (622)
.+++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9874
No 69
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.64 E-value=7e-16 Score=128.74 Aligned_cols=76 Identities=21% Similarity=0.359 Sum_probs=70.5
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++. +++.|+|+.|.|+
T Consensus 8 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 8 EEDAGKMFVGGL-SWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPK 85 (87)
T ss_dssp CSCTTEEEEECC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEE
Confidence 466789999999 999999999999999999999999876 5699999999999999999976 8899999999999
Q ss_pred eC
Q 006992 446 PY 447 (622)
Q Consensus 446 ~A 447 (622)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 76
No 70
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=4e-16 Score=133.00 Aligned_cols=83 Identities=11% Similarity=0.018 Sum_probs=75.4
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~ 443 (622)
......++|||+|| ++.+|+++|+++|++||.|.+|+++.+ ++||||||+|.+.++|++|++.||+..|+|+.|+
T Consensus 10 ~~~~~~~~l~v~nL-p~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 88 (98)
T 2cqp_A 10 SGKPGPTIIKVQNM-PFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (98)
T ss_dssp CCCCSSEEEEEESC-CTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 34566789999999 999999999999999999998888775 5789999999999999999999999999999999
Q ss_pred EEeCccCC
Q 006992 444 VKPYKEKG 451 (622)
Q Consensus 444 Vk~Ak~K~ 451 (622)
|.++..+.
T Consensus 89 V~~a~~~~ 96 (98)
T 2cqp_A 89 LVLGSGPS 96 (98)
T ss_dssp EEESSCSS
T ss_pred EEEcCCCC
Confidence 99987653
No 71
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6e-16 Score=135.04 Aligned_cols=80 Identities=19% Similarity=0.218 Sum_probs=75.5
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCccC
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~K 450 (622)
...++|||+|| +..+|+++|+++|++||+|.+|+|+. .||||||+|.+.++|++|++.|++..|+|++|.|.+++++
T Consensus 23 ~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 23 PKNCTVYCGGI-ASGLTDQLMRQTFSPFGQIMEIRVFP--EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SSCCEEEEECC-SSCCCHHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 56789999999 99999999999999999999999998 4999999999999999999999999999999999999887
Q ss_pred CCC
Q 006992 451 GKV 453 (622)
Q Consensus 451 ~k~ 453 (622)
...
T Consensus 100 ~~~ 102 (109)
T 1x4g_A 100 PDM 102 (109)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 72
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.64 E-value=5.5e-16 Score=136.97 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=73.4
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCc--eEcCeEEEEEe
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPH--FVCDARVLVKP 446 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~--~I~GR~I~Vk~ 446 (622)
..+.+++|||+|| ++++||++|+++|++||+|.+|+|++ .||||||+|.+.++|.+|++.|++. .|.||+|+|.+
T Consensus 17 ~~~ps~~l~V~NL-p~~~te~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 17 KTPASPVVHIRGL-IDGVVEADLVEALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCCCCSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred cCCCCcEEEEeCC-CCCCCHHHHHHHHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 3466899999999 99999999999999999999999997 7999999999999999999998766 48899999999
Q ss_pred CccCC
Q 006992 447 YKEKG 451 (622)
Q Consensus 447 Ak~K~ 451 (622)
++.+.
T Consensus 94 S~~k~ 98 (100)
T 3r27_A 94 STSQK 98 (100)
T ss_dssp CSCSC
T ss_pred ccccc
Confidence 98764
No 73
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=7.9e-16 Score=132.77 Aligned_cols=81 Identities=15% Similarity=0.167 Sum_probs=74.8
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
....++|||+|| ++.+|+++|+++|++|| |.+|+|+.+ ++||||||+|.+.++|++|+ .||+..|.|++|.|.
T Consensus 12 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 12 TEPPYTAYVGNL-PFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp SSSCEEEEEESC-CTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCeEEEEeCC-CCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 456789999999 99999999999999997 999999986 46899999999999999999 899999999999999
Q ss_pred eCccCCCC
Q 006992 446 PYKEKGKV 453 (622)
Q Consensus 446 ~Ak~K~k~ 453 (622)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dng_A 89 IAEGRKQD 96 (103)
T ss_dssp ECCCCCCC
T ss_pred EecCCCCC
Confidence 99887654
No 74
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.64 E-value=5.7e-16 Score=137.84 Aligned_cols=83 Identities=18% Similarity=0.239 Sum_probs=77.0
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
...++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|.|.++
T Consensus 5 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGL-NRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECC-TTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 45789999999 999999999999999999999999986 58899999999999999999999999999999999999
Q ss_pred ccCCCCc
Q 006992 448 KEKGKVP 454 (622)
Q Consensus 448 k~K~k~~ 454 (622)
+++....
T Consensus 84 ~~~~~~~ 90 (116)
T 2fy1_A 84 KKPSFQS 90 (116)
T ss_dssp CCSSCSS
T ss_pred CCCCCCC
Confidence 8776543
No 75
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.64 E-value=3.1e-16 Score=133.19 Aligned_cols=84 Identities=15% Similarity=0.248 Sum_probs=76.9
Q ss_pred CCCCceEEEcCCCCCCCCHHHHH----HHhhccCCceeEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 370 NPASRQIYLTFPADSTFREEDVS----NYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLr----e~FsqFG~V~dVrI~~D-ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
.+..++|||+|| ++.+|+++|+ ++|++||+|.+|+|+.. ++||||||+|.+.++|++|++.|++..|+|+.|.|
T Consensus 5 ~~~~~~l~V~nL-p~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 5 TRPNHTIYINNL-NEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp -CCCSEEEEESC-CTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 356789999999 9999999999 99999999999999853 68999999999999999999999999999999999
Q ss_pred EeCccCCCCc
Q 006992 445 KPYKEKGKVP 454 (622)
Q Consensus 445 k~Ak~K~k~~ 454 (622)
.+++++.+..
T Consensus 84 ~~a~~~~~~~ 93 (97)
T 1nu4_A 84 QYAKTDSDII 93 (97)
T ss_dssp EECSSCCTHH
T ss_pred EEccCCCccc
Confidence 9999877654
No 76
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.64 E-value=9.8e-16 Score=137.85 Aligned_cols=80 Identities=20% Similarity=0.314 Sum_probs=74.0
Q ss_pred CCCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEE
Q 006992 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (622)
Q Consensus 367 g~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I 442 (622)
+......++|||+|| +..+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.|++..|.|++|
T Consensus 57 ~~~~~~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 57 GGSATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp CSSCSSCCEEEEECC-CTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCCCCcEEEEEeC-CCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 455567899999999 999999999999999999999999886 579999999999999999999999999999999
Q ss_pred EEEeC
Q 006992 443 LVKPY 447 (622)
Q Consensus 443 ~Vk~A 447 (622)
+|.+|
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99875
No 77
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.63 E-value=1.1e-15 Score=132.06 Aligned_cols=80 Identities=14% Similarity=0.168 Sum_probs=74.3
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~ 449 (622)
....++|||+|| ++++|+++|+++|++||+|.+|+|+ ||||||+|.+.++|++|++.|+++.|+|+.|.|.++++
T Consensus 8 ~~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 8 MAKVKVLFVRNL-ANTVTEEILEKAFSQFGKLERVKKL----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCCCEEEECC-CTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 356789999999 9999999999999999999999987 57999999999999999999999999999999999988
Q ss_pred CCCCc
Q 006992 450 KGKVP 454 (622)
Q Consensus 450 K~k~~ 454 (622)
+....
T Consensus 83 ~~~~~ 87 (103)
T 2dgu_A 83 PDQKR 87 (103)
T ss_dssp CCCCC
T ss_pred Ccccc
Confidence 77654
No 78
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=2.3e-16 Score=139.37 Aligned_cols=80 Identities=11% Similarity=0.061 Sum_probs=74.4
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~ 449 (622)
....++|||+|| ++.+|+++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.||+..|.|+.|.|.++..
T Consensus 7 ~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 7 GRSKTVILAKNL-PAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp SEEEEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 445789999999 99999999999999999999999987 899999999999999999999999999999999999976
Q ss_pred CCC
Q 006992 450 KGK 452 (622)
Q Consensus 450 K~k 452 (622)
...
T Consensus 84 ~~~ 86 (111)
T 1whx_A 84 GVF 86 (111)
T ss_dssp TTT
T ss_pred Ccc
Confidence 543
No 79
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8.4e-16 Score=135.28 Aligned_cols=82 Identities=24% Similarity=0.338 Sum_probs=75.9
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
...++|||+|| ++++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++. +++.|+|+.|.|.+
T Consensus 25 ~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 25 EQFRKLFIGGL-SFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHTEEEEECC-TTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34589999999 999999999999999999999999986 5799999999999999999999 99999999999999
Q ss_pred CccCCCCc
Q 006992 447 YKEKGKVP 454 (622)
Q Consensus 447 Ak~K~k~~ 454 (622)
+.++....
T Consensus 103 a~~~~~~~ 110 (116)
T 1x4b_A 103 AVAREESG 110 (116)
T ss_dssp CSSCCCCC
T ss_pred CCCCccCC
Confidence 99887643
No 80
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1e-15 Score=128.96 Aligned_cols=79 Identities=16% Similarity=0.189 Sum_probs=73.6
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~ 449 (622)
....++|||+|| ++.+|+++|+++|++||+|.+|+|++ +||||+|.+.++|++|++.||+..|+|++|.|.++++
T Consensus 6 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~~~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 6 SGNTWKIFVGNV-SAACTSQELRSLFERRGRVIECDVVK----DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp SCCSCCEEEESC-CTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHcCCCEEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 467889999999 99999999999999999999999985 5999999999999999999999999999999999988
Q ss_pred CCCC
Q 006992 450 KGKV 453 (622)
Q Consensus 450 K~k~ 453 (622)
+...
T Consensus 81 ~~~~ 84 (90)
T 2dnp_A 81 GQKK 84 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7554
No 81
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.63 E-value=4e-16 Score=137.18 Aligned_cols=83 Identities=17% Similarity=0.282 Sum_probs=76.9
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~ 443 (622)
......++|||+|| +..+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.|++..|+|++|.
T Consensus 21 ~~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 21 KGSAGPMRLYVGSL-HFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CSCSSCEEEEEECC-CSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34467799999999 999999999999999999999999976 5689999999999999999999999999999999
Q ss_pred EEeCccCC
Q 006992 444 VKPYKEKG 451 (622)
Q Consensus 444 Vk~Ak~K~ 451 (622)
|.+++++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99998875
No 82
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.63 E-value=2.1e-16 Score=142.90 Aligned_cols=82 Identities=15% Similarity=0.123 Sum_probs=75.8
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCcee--EEeecc----CCCceEEEEECCHHHHHHHHHhCCCc----eEcC
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQD--VRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPH----FVCD 439 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~d--VrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~----~I~G 439 (622)
....++|||+|| ++++||++|+++|++||.|.. |+|++| ++||||||+|.+. +|++|+..||+. .|+|
T Consensus 20 ~~~~~~lfV~nL-~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 20 ENANDTIILRNL-NPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp SCCCCEEEECSC-CTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 356789999999 999999999999999999976 999987 5899999999999 999999999999 9999
Q ss_pred eEEEEEeCccCCCC
Q 006992 440 ARVLVKPYKEKGKV 453 (622)
Q Consensus 440 R~I~Vk~Ak~K~k~ 453 (622)
++|.|.+++++.+.
T Consensus 98 r~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 98 KTINVEFAKGSKRD 111 (131)
T ss_dssp CCCCCEECCCSCCC
T ss_pred EEEEEEECCCCCCC
Confidence 99999999887654
No 83
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.3e-16 Score=140.84 Aligned_cols=82 Identities=12% Similarity=0.083 Sum_probs=74.8
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCC--CceEcCeEEEEEeC
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN--PHFVCDARVLVKPY 447 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mn--g~~I~GR~I~Vk~A 447 (622)
.+..++|||+|| ++++||++|+++|++||+|.+|+|+. .||||||+|.+.++|++|++.++ +..|.|++|+|.++
T Consensus 28 ~~ps~~LfVgNL-p~~vte~dL~~lF~~fG~V~~v~i~~--~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 28 GVPSRVIHIRKL-PIDVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SSCCSEEEEESC-CTTCCHHHHHHHHTTTSCCCEEEEEG--GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 356789999999 99999999999999999999999998 58999999999999999999886 46899999999999
Q ss_pred ccCCCCc
Q 006992 448 KEKGKVP 454 (622)
Q Consensus 448 k~K~k~~ 454 (622)
+++....
T Consensus 105 ~~k~~~~ 111 (119)
T 2ad9_A 105 NHKELKT 111 (119)
T ss_dssp SSSSCCC
T ss_pred cCCCCCc
Confidence 8876654
No 84
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.63 E-value=6.8e-16 Score=134.47 Aligned_cols=82 Identities=11% Similarity=0.130 Sum_probs=74.7
Q ss_pred CCCceEEEcCCCCCCC------CHHHHHHHhhccCCceeEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCe-E
Q 006992 371 PASRQIYLTFPADSTF------REEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDA-R 441 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~------TEedLre~FsqFG~V~dVrI~~D--ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR-~ 441 (622)
...++|||+|| ++.+ |+++|+++|++||+|.+|+|+.. ++||||||+|.+.++|++|+..||+..|+|+ +
T Consensus 13 ~~~~~l~V~nL-p~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 13 GIDSVIVVDNV-PQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp SCCSEEEEESC-CCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCEEEEeCC-CcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 44789999999 8888 78999999999999999999853 6899999999999999999999999999999 9
Q ss_pred EEEEeCccCCCC
Q 006992 442 VLVKPYKEKGKV 453 (622)
Q Consensus 442 I~Vk~Ak~K~k~ 453 (622)
|.|.++....+.
T Consensus 92 l~V~~a~~~~k~ 103 (105)
T 2nlw_A 92 FRVNLFTDFDKY 103 (105)
T ss_dssp EEEECSCCCCCC
T ss_pred EEEEEcchHhhh
Confidence 999999876553
No 85
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.63 E-value=1.5e-15 Score=135.45 Aligned_cols=86 Identities=9% Similarity=0.092 Sum_probs=78.6
Q ss_pred CCCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 006992 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (622)
Q Consensus 367 g~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~ 443 (622)
+......++|||+|| ++.+++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.|++..|+|+.|+
T Consensus 29 ~~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 107 (124)
T 2kt5_A 29 GEGVETGAKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD 107 (124)
T ss_dssp CCCCSSCEEEEEESC-CSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred CCCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 345567789999999 999999999999999999999999986 5899999999999999999999999999999999
Q ss_pred EEeCccCCCC
Q 006992 444 VKPYKEKGKV 453 (622)
Q Consensus 444 Vk~Ak~K~k~ 453 (622)
|.+|.++...
T Consensus 108 V~~a~~~~~~ 117 (124)
T 2kt5_A 108 IQLVASQIDL 117 (124)
T ss_dssp EEEECCTTCC
T ss_pred EEEeCCCCCC
Confidence 9999876544
No 86
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.63 E-value=7e-16 Score=133.46 Aligned_cols=80 Identities=10% Similarity=0.098 Sum_probs=74.5
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
......++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.|++..|.|+.|.|
T Consensus 24 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34467899999999 999999999999999999999999976 67999999999999999999999999999999999
Q ss_pred EeCc
Q 006992 445 KPYK 448 (622)
Q Consensus 445 k~Ak 448 (622)
.++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 87
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.63 E-value=4.2e-16 Score=141.63 Aligned_cols=83 Identities=25% Similarity=0.248 Sum_probs=77.2
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
.....++|||+|| ++++|+++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.|++..|+|++|.|
T Consensus 42 ~~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 42 NPDPNCCLGVFGL-SLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp CCCCSSCBCEETC-TTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456789999999 999999999999999999999999986 68999999999999999999999999999999999
Q ss_pred EeCccCCC
Q 006992 445 KPYKEKGK 452 (622)
Q Consensus 445 k~Ak~K~k 452 (622)
.+++++..
T Consensus 121 ~~a~~~~p 128 (129)
T 2kxn_B 121 DFSITKRP 128 (129)
T ss_dssp SCCSSSSC
T ss_pred EEecCCCC
Confidence 99988764
No 88
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.63 E-value=6.1e-16 Score=131.70 Aligned_cols=81 Identities=21% Similarity=0.330 Sum_probs=64.2
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
.......+||||+| ++++||++|+++|++||+|.+|+|+.+ +||||||+|.++++|+++. . ....+.|++|.|.++
T Consensus 6 ~~~~~~~~l~V~~L-p~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~~~-~-~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 6 HHHHHGSKVFVGRC-TEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQSLC-G-EDLIIKGISVHISNA 81 (89)
T ss_dssp -----CCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHHHT-T-CEEEETTEEEEEEEC
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHHHc-C-CCcccCCEEEEEEEc
Confidence 44567889999999 999999999999999999999999985 8999999999999998432 2 234566999999999
Q ss_pred ccCCC
Q 006992 448 KEKGK 452 (622)
Q Consensus 448 k~K~k 452 (622)
.++..
T Consensus 82 ~~k~~ 86 (89)
T 3d2w_A 82 EPKHN 86 (89)
T ss_dssp C----
T ss_pred CCCCc
Confidence 88764
No 89
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.4e-15 Score=131.49 Aligned_cols=80 Identities=18% Similarity=0.274 Sum_probs=74.4
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc-----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D-----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
...++|||+|| ++++|+++|+++|++|| |.+|+|+.+ ++||||||+|.+.++|++|+ .|++..|+|+.|.|.
T Consensus 13 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 13 SPPYTAFLGNL-PYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSCEEEEEESC-CSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCEEEEeCC-CCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 45689999999 99999999999999999 999999876 45899999999999999999 999999999999999
Q ss_pred eCccCCCC
Q 006992 446 PYKEKGKV 453 (622)
Q Consensus 446 ~Ak~K~k~ 453 (622)
++.++...
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99887654
No 90
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=4.1e-16 Score=134.27 Aligned_cols=82 Identities=12% Similarity=0.151 Sum_probs=76.5
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhc-cCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCce-EcCeEEEEE
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSI-YGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHF-VCDARVLVK 445 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~Fsq-FG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~-I~GR~I~Vk 445 (622)
...++|||+|| ++++|+++|+++|++ ||+|.+|+|+.| ++||||||+|.+.++|++|++.|++.. |+|+.|.|.
T Consensus 7 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDL-TPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECC-CTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 56789999999 999999999999999 999999999986 579999999999999999999999999 999999999
Q ss_pred eCccCCCC
Q 006992 446 PYKEKGKV 453 (622)
Q Consensus 446 ~Ak~K~k~ 453 (622)
++.++...
T Consensus 86 ~a~~~~~~ 93 (104)
T 2dhg_A 86 VAIPKASR 93 (104)
T ss_dssp BCCCCCSC
T ss_pred EccCCCcC
Confidence 99877654
No 91
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.63 E-value=6e-16 Score=132.59 Aligned_cols=80 Identities=14% Similarity=0.139 Sum_probs=74.5
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCcee--------EEeecc----CCCceEEEEECCHHHHHHHHHhCCCc
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQD--------VRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPH 435 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~d--------VrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~ 435 (622)
......++|||+|| ++++|+++|+++|++||.|.+ |+|+.| ++||||||+|.+.++|++|++.||+.
T Consensus 8 ~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 8 HSHSDNNTIFVQGL-GENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CSCCCCSEEEEECC-CSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 44567899999999 999999999999999999999 999886 56899999999999999999999999
Q ss_pred eEcCeEEEEEeCc
Q 006992 436 FVCDARVLVKPYK 448 (622)
Q Consensus 436 ~I~GR~I~Vk~Ak 448 (622)
.|.|++|+|.+|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999874
No 92
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.6e-15 Score=128.38 Aligned_cols=79 Identities=18% Similarity=0.195 Sum_probs=73.1
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~ 449 (622)
....++|||+|+ ++|+++|+++|++||+|.+|+|.. +||||||+|.+.++|++|++.|++..|+|++|.|.++++
T Consensus 12 ~~~~~~l~V~n~---~~t~~~l~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 12 PRKGNTLYVYGE---DMTPTLLRGAFSPFGNIIDLSMDP--PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCCCSEEEEECS---SCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCCCEEEEcCC---CCCHHHHHHHHhhCCCEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 356789999997 799999999999999999999975 899999999999999999999999999999999999988
Q ss_pred CCCC
Q 006992 450 KGKV 453 (622)
Q Consensus 450 K~k~ 453 (622)
+...
T Consensus 87 ~~~~ 90 (97)
T 1x5p_A 87 QPML 90 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 93
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.62 E-value=3e-16 Score=127.52 Aligned_cols=71 Identities=28% Similarity=0.408 Sum_probs=67.2
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 375 tIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
+|||+|| ++++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++ |+++.|+|++|.|++|
T Consensus 1 ~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGL-SVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECC-CSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5999999 999999999999999999999999875 579999999999999999998 8999999999999876
No 94
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.62 E-value=7.1e-16 Score=137.41 Aligned_cols=86 Identities=13% Similarity=0.170 Sum_probs=78.6
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~ 443 (622)
......++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|.
T Consensus 17 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 17 QRSVEGWILFVTGV-HEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp CCCSSSEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 34456789999999 999999999999999999999999876 5799999999999999999999999999999999
Q ss_pred EEeCccCCCCc
Q 006992 444 VKPYKEKGKVP 454 (622)
Q Consensus 444 Vk~Ak~K~k~~ 454 (622)
|.++.++....
T Consensus 96 v~~a~~~~~~~ 106 (126)
T 3ex7_B 96 VDWCFVRGPPK 106 (126)
T ss_dssp EEESEESSSCC
T ss_pred EEEecCCCCCC
Confidence 99998876654
No 95
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4e-16 Score=134.14 Aligned_cols=82 Identities=20% Similarity=0.269 Sum_probs=75.8
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
...++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.|++..|+|+.|.|.+
T Consensus 6 ~~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 6 RSLRSVFVGNI-PYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHSCEEEESC-CTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCccEEEEeCC-CCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 45689999999 999999999999999999999999976 4689999999999999999999999999999999999
Q ss_pred CccCCCC
Q 006992 447 YKEKGKV 453 (622)
Q Consensus 447 Ak~K~k~ 453 (622)
+.++...
T Consensus 85 a~~~~~~ 91 (104)
T 1p1t_A 85 AASEKNK 91 (104)
T ss_dssp TTCTTHH
T ss_pred CCCccch
Confidence 9876553
No 96
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.1e-15 Score=129.86 Aligned_cols=83 Identities=22% Similarity=0.274 Sum_probs=75.1
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
.....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++. ++.|+|++|.|
T Consensus 11 ~~~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v 87 (103)
T 2cqg_A 11 AVQKTSDLIVLGL-PWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCEEEESC-CSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEE
T ss_pred ccCCCCEEEEEcC-CCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEE
Confidence 3456789999999 999999999999999999999999886 5689999999999999999995 68999999999
Q ss_pred EeCccCCCCc
Q 006992 445 KPYKEKGKVP 454 (622)
Q Consensus 445 k~Ak~K~k~~ 454 (622)
.++.++....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2cqg_A 88 KLPNSKQSQD 97 (103)
T ss_dssp ECCCTTCCCC
T ss_pred EecCCCCcCC
Confidence 9998876643
No 97
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=3.5e-16 Score=134.30 Aligned_cols=78 Identities=22% Similarity=0.348 Sum_probs=73.9
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCccCCCC
Q 006992 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGKV 453 (622)
Q Consensus 374 rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~K~k~ 453 (622)
++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +||||||+|.+.++|++|++.|++..|+|+.|.|.+++++...
T Consensus 1 ~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNL-GTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECC-CSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 48999999 999999999999999999999999997 7999999999999999999999999999999999999887644
No 98
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=8.3e-16 Score=140.35 Aligned_cols=82 Identities=10% Similarity=0.108 Sum_probs=74.9
Q ss_pred CCCceEEEcCCCCCCCCHHHHH----HHhhccCCceeEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 371 PASRQIYLTFPADSTFREEDVS----NYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLr----e~FsqFG~V~dVrI~~D-ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
...++|||+|| ++.+++++|+ ++|++||+|.+|.|+.. ++||||||+|.+.++|+.|++.||+..|.|+.|+|.
T Consensus 27 ~p~~~LfV~nL-~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 27 EPSQVVLITNI-NPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp SCCSEEEEESC-CTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 45789999999 9999999876 69999999999999764 799999999999999999999999999999999999
Q ss_pred eCccCCCC
Q 006992 446 PYKEKGKV 453 (622)
Q Consensus 446 ~Ak~K~k~ 453 (622)
+++.+...
T Consensus 106 ~a~~~~~~ 113 (127)
T 2a3j_A 106 FSETPQSQ 113 (127)
T ss_dssp ECCCCCHH
T ss_pred EccCcchh
Confidence 99877643
No 99
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=6.2e-16 Score=136.37 Aligned_cols=81 Identities=11% Similarity=0.071 Sum_probs=73.2
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCC--ceEcCeEEEEEeC
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNP--HFVCDARVLVKPY 447 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng--~~I~GR~I~Vk~A 447 (622)
.+..++|||+|| ++++||++|+++|++||+|.+|+|+. .||||||+|.+.++|++|++.|++ ..|+|++|+|.++
T Consensus 12 ~~p~~~l~V~nL-p~~~te~~L~~~F~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 12 VSVSPVVHVRGL-CESVVEADLVEALEKFGTICYVMMMP--FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCSEEEEESC-CSSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 355789999999 99999999999999999999999998 699999999999999999998754 5699999999999
Q ss_pred ccCCCC
Q 006992 448 KEKGKV 453 (622)
Q Consensus 448 k~K~k~ 453 (622)
+.+...
T Consensus 89 ~~~~~~ 94 (104)
T 1wex_A 89 TSKRIT 94 (104)
T ss_dssp SSSSCC
T ss_pred cCcccc
Confidence 876653
No 100
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.9e-16 Score=136.38 Aligned_cols=78 Identities=19% Similarity=0.358 Sum_probs=72.7
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
...++|||+|| ++.+|+++|+++|++||.|.+|+|+.| ++||||||+|.+.++|++|+ .||++.|+|+.|.|.+
T Consensus 23 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 23 RDARTVFCMQL-AARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHTEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 45689999999 999999999999999999999999975 57999999999999999999 8999999999999999
Q ss_pred CccC
Q 006992 447 YKEK 450 (622)
Q Consensus 447 Ak~K 450 (622)
++++
T Consensus 101 a~~~ 104 (114)
T 2cq4_A 101 SQAE 104 (114)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 8754
No 101
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8.9e-16 Score=135.60 Aligned_cols=80 Identities=14% Similarity=0.026 Sum_probs=74.2
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCc-eeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPV-QDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V-~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
.....++|||+|| ++++|+++|+++|++||.| .+|+|++| ++||||||+|.+.++|++|++. +++.|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNI-PFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESC-CTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCc-CCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 4456789999999 9999999999999999999 89999986 6899999999999999999998 999999999999
Q ss_pred EeCccC
Q 006992 445 KPYKEK 450 (622)
Q Consensus 445 k~Ak~K 450 (622)
.++.++
T Consensus 89 ~~a~~~ 94 (114)
T 2cpy_A 89 HVVTLE 94 (114)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998654
No 102
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.62 E-value=3.9e-16 Score=132.09 Aligned_cols=79 Identities=11% Similarity=0.061 Sum_probs=71.0
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
.+..++|||+|| ++++|+++|+++|++||.|.+|+++.+ ++||||||+|.++++|++|++.||++.|+|++|+|.
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 12 KPGPTVIKVQNM-PFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp ---CEEEEEECC-CTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 355689999999 999999999999999999999988875 578999999999999999999999999999999999
Q ss_pred eCcc
Q 006992 446 PYKE 449 (622)
Q Consensus 446 ~Ak~ 449 (622)
++..
T Consensus 91 ~a~s 94 (95)
T 2ek1_A 91 GPSS 94 (95)
T ss_dssp CCC-
T ss_pred eccC
Confidence 8753
No 103
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.7e-16 Score=130.64 Aligned_cols=80 Identities=10% Similarity=0.041 Sum_probs=72.7
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCC-ceeEEeeccCCCceEEEEECCHHHHHHHHHhCCC-ceEcCeEEEEEeC
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGP-VQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNP-HFVCDARVLVKPY 447 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~-V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng-~~I~GR~I~Vk~A 447 (622)
....++|||+|| ++++|+++|+++|++||. |..+.+. +||||||+|.+.++|++|++.||+ ..|+|++|+|.++
T Consensus 5 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 5 SSGMNKLYIGNL-SPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCCEEEECC-CTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 456789999999 999999999999999999 6666653 699999999999999999999999 9999999999999
Q ss_pred ccCCCC
Q 006992 448 KEKGKV 453 (622)
Q Consensus 448 k~K~k~ 453 (622)
+++...
T Consensus 81 ~~~~~~ 86 (93)
T 2cqh_A 81 VSKKLR 86 (93)
T ss_dssp CCCCCC
T ss_pred cCcccc
Confidence 887654
No 104
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9.7e-16 Score=133.02 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=75.8
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCC-ceeEEee-cc----CCCceEEEEECCHHHHHHHHHhCC--CceEcCeEE
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGP-VQDVRIP-YQ----QKRMFGFVTFVYPETVKIILAKGN--PHFVCDARV 442 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~-V~dVrI~-~D----ksRGFGFVtF~~~e~A~~Al~~mn--g~~I~GR~I 442 (622)
...++|||+|| ++.+|+++|+++|++||+ |.+|+|+ .+ ++||||||+|.+.++|++|++.|+ +..|+|+.|
T Consensus 6 ~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 6 SGNCRLFIGGI-PKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCSEEEEEECC-CTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred cCCCEEEEeCC-CCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 56789999999 999999999999999999 9999998 44 689999999999999999999996 589999999
Q ss_pred EEEeCccCCCCc
Q 006992 443 LVKPYKEKGKVP 454 (622)
Q Consensus 443 ~Vk~Ak~K~k~~ 454 (622)
.|.++.++....
T Consensus 85 ~V~~a~~~~~~~ 96 (109)
T 2dis_A 85 AVDWAEPEIDVD 96 (109)
T ss_dssp EEEESCSSCSTT
T ss_pred EEEEcCCCCCcC
Confidence 999999876643
No 105
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.62 E-value=1.2e-15 Score=140.68 Aligned_cols=85 Identities=16% Similarity=0.152 Sum_probs=78.1
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
.....++|||+|| ++.+|+++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.||++.|+|+.|.|
T Consensus 66 ~~~~~~~l~v~nl-~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 144 (158)
T 2kn4_A 66 DVEGMTSLKVDNL-TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 144 (158)
T ss_dssp CCCBCCEEEEESC-CTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3356789999999 999999999999999999999999986 58999999999999999999999999999999999
Q ss_pred EeCccCCCCc
Q 006992 445 KPYKEKGKVP 454 (622)
Q Consensus 445 k~Ak~K~k~~ 454 (622)
.+++++....
T Consensus 145 ~~a~~~~~~~ 154 (158)
T 2kn4_A 145 QMARYGRPPD 154 (158)
T ss_dssp EEECCSSCCC
T ss_pred EECCCCCCCC
Confidence 9998876543
No 106
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.62 E-value=3.7e-16 Score=134.78 Aligned_cols=80 Identities=18% Similarity=0.274 Sum_probs=71.1
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc-----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D-----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~ 443 (622)
.....++|||+|| ++++|+++|+++|++|| |.+|+|+.+ ++||||||+|.+.++|++|+ .|++..|+|+.|.
T Consensus 15 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 15 PKSPPYTAFLGNL-PYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp -----CEEEESCC-SSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3466899999999 99999999999999999 999999876 46999999999999999999 8999999999999
Q ss_pred EEeCccCC
Q 006992 444 VKPYKEKG 451 (622)
Q Consensus 444 Vk~Ak~K~ 451 (622)
|.+++++.
T Consensus 92 V~~a~~~~ 99 (100)
T 2j76_E 92 VDVADQAQ 99 (100)
T ss_dssp CEECCCSC
T ss_pred EEeccCCC
Confidence 99998765
No 107
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9.3e-16 Score=133.37 Aligned_cols=81 Identities=15% Similarity=0.134 Sum_probs=73.8
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCcee-EEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQD-VRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~d-VrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
.....++|||+|| ++++||++|+++|++||.|.+ |+|+.+ ++||||||+|.++++|++|++. +++.|+||.|.|
T Consensus 11 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGL-PFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESC-CTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 3456789999999 999999999999999999998 889875 6899999999999999999998 999999999999
Q ss_pred EeCccCC
Q 006992 445 KPYKEKG 451 (622)
Q Consensus 445 k~Ak~K~ 451 (622)
.++.++.
T Consensus 89 ~~~~~~~ 95 (104)
T 1wg5_A 89 FKSSRAE 95 (104)
T ss_dssp EEECTTT
T ss_pred EECCHHH
Confidence 9886543
No 108
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.62 E-value=1.8e-16 Score=133.08 Aligned_cols=79 Identities=25% Similarity=0.330 Sum_probs=69.4
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 006992 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (622)
Q Consensus 374 rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~ 449 (622)
++|||+|| +.++++++|+++|++||+|.+|+|+.+ ++||||||+|.+.+ |++|+..||+..|+|+.|.|.+|.+
T Consensus 2 ~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNL-VYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEE-CTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCC-CCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 68999999 999999999999999999999999986 57999999999999 9999999999999999999999987
Q ss_pred CCCCc
Q 006992 450 KGKVP 454 (622)
Q Consensus 450 K~k~~ 454 (622)
+....
T Consensus 80 ~~~~~ 84 (90)
T 2ki2_A 80 KKSLE 84 (90)
T ss_dssp -----
T ss_pred CCCCC
Confidence 65543
No 109
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.62 E-value=1.8e-15 Score=130.35 Aligned_cols=79 Identities=16% Similarity=0.346 Sum_probs=72.3
Q ss_pred CCCCCCceEEEcCCCCC-CCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 368 IVNPASRQIYLTFPADS-TFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~-~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
...+..++|||+|| ++ .+++++|+++|++||.|.+|+|. ||||||+|.+.++|++|++.||+..++|++|.|.+
T Consensus 17 ~~~~~~~~l~V~nL-p~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 17 RGSHMKSRLFIGNL-PLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp --CCTTCEEEEESC-CSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCCCEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 33467899999999 87 99999999999999999999984 79999999999999999999999999999999999
Q ss_pred CccCC
Q 006992 447 YKEKG 451 (622)
Q Consensus 447 Ak~K~ 451 (622)
++.+.
T Consensus 92 a~~~~ 96 (97)
T 2xnq_A 92 SSSNA 96 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98764
No 110
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=4.1e-16 Score=126.81 Aligned_cols=72 Identities=24% Similarity=0.362 Sum_probs=68.5
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 374 rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
++|||+|| ++++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.++ +.++|++|.|.+|
T Consensus 1 ~~l~v~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGL-SWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESC-CSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 57999999 999999999999999999999999886 579999999999999999999999 9999999999987
No 111
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.61 E-value=1.4e-15 Score=133.94 Aligned_cols=79 Identities=18% Similarity=0.280 Sum_probs=73.3
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~ 449 (622)
....++|||+|| ++.+|+++|+++|++||+|.+|+|+ ||||||+|.+.++|++|++.||+..|+|+.|.|.++++
T Consensus 28 ~~~~~~l~V~nL-p~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 28 ELSNTRLFVRPF-PLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CCSCSEEEECSS-CTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 466799999999 9999999999999999999999998 79999999999999999999999999999999999988
Q ss_pred CCCC
Q 006992 450 KGKV 453 (622)
Q Consensus 450 K~k~ 453 (622)
+.++
T Consensus 103 ~~~r 106 (108)
T 2jvo_A 103 PAKR 106 (108)
T ss_dssp CC--
T ss_pred CCCC
Confidence 7654
No 112
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-15 Score=129.99 Aligned_cols=82 Identities=16% Similarity=0.208 Sum_probs=73.4
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
......++|||+|| ++++|+++|+++|++||.| +|+.+ ++||||||+|.+.++|++|++.|+++.|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 10 TWSGESKTLVLSNL-SYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CCSCCCSEEEEESC-CTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred cCCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 34567899999999 9999999999999999987 45553 68999999999999999999999999999999999
Q ss_pred EeCccCCCC
Q 006992 445 KPYKEKGKV 453 (622)
Q Consensus 445 k~Ak~K~k~ 453 (622)
.+++++...
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2fc9_A 86 ELQGPRGSP 94 (101)
T ss_dssp EECSSCCCC
T ss_pred EEcCCCCCC
Confidence 999887553
No 113
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.61 E-value=8.8e-16 Score=134.74 Aligned_cols=79 Identities=18% Similarity=0.294 Sum_probs=74.4
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D-ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~ 449 (622)
...++|||+|| ++.+|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|++|+..||+..|+|+.|.|.++.+
T Consensus 6 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 6 EVNRILYIRNL-PYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TCCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 45789999999 999999999999999999999999986 6799999999999999999999999999999999999975
Q ss_pred C
Q 006992 450 K 450 (622)
Q Consensus 450 K 450 (622)
+
T Consensus 85 ~ 85 (115)
T 3lqv_A 85 N 85 (115)
T ss_dssp H
T ss_pred C
Confidence 4
No 114
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.61 E-value=8.5e-16 Score=141.27 Aligned_cols=82 Identities=20% Similarity=0.320 Sum_probs=76.7
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
......++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +||||||+|.+.++|++|+..||+..|+|++|+|.++
T Consensus 68 ~~~~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 68 DSCPLDCKVYVGNL-GNNGNKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp SSSTTSCEEEEESC-CSCCSCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred cCCCCCCEEEEeCC-CCCCCHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 34467799999999 999999999999999999999999986 7999999999999999999999999999999999999
Q ss_pred ccCC
Q 006992 448 KEKG 451 (622)
Q Consensus 448 k~K~ 451 (622)
+++.
T Consensus 146 ~~~~ 149 (150)
T 2i2y_A 146 NGEK 149 (150)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8865
No 115
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.61 E-value=1.9e-15 Score=139.87 Aligned_cols=83 Identities=14% Similarity=0.062 Sum_probs=77.0
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
...++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|+|+.|.|.+
T Consensus 37 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 37 KKSCTLYVGNL-SFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTCCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 56789999999 999999999999999999999999886 4789999999999999999999999999999999999
Q ss_pred CccCCCCc
Q 006992 447 YKEKGKVP 454 (622)
Q Consensus 447 Ak~K~k~~ 454 (622)
++++....
T Consensus 116 a~~~~~~~ 123 (156)
T 1h2v_Z 116 DAGFKEGR 123 (156)
T ss_dssp ESCCCTTC
T ss_pred CCCCCCcC
Confidence 98766544
No 116
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.61 E-value=1.5e-15 Score=134.90 Aligned_cols=79 Identities=15% Similarity=0.271 Sum_probs=73.3
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 372 ~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
..++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|+ .|+++.|+|+.|.|.++
T Consensus 35 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 35 DKRSVYVGNV-DYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHTEEEEEEE-CTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 3689999999 999999999999999999999999875 57999999999999999999 89999999999999999
Q ss_pred ccCCC
Q 006992 448 KEKGK 452 (622)
Q Consensus 448 k~K~k 452 (622)
++...
T Consensus 113 ~~~~~ 117 (124)
T 2jwn_A 113 RTNMP 117 (124)
T ss_dssp SCCCS
T ss_pred CCCCC
Confidence 86544
No 117
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.4e-16 Score=130.12 Aligned_cols=77 Identities=14% Similarity=0.185 Sum_probs=71.3
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
...++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|.|+.++|.+
T Consensus 3 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGL-QPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESC-CTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 45789999999 999999999999999999999999886 5699999999999999999999999999999998876
Q ss_pred Cc
Q 006992 447 YK 448 (622)
Q Consensus 447 Ak 448 (622)
..
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 118
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=8.3e-16 Score=138.17 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=72.8
Q ss_pred CCCceEEEcCCCCCC-CCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCC--CceEcCeEEEEEeC
Q 006992 371 PASRQIYLTFPADST-FREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN--PHFVCDARVLVKPY 447 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~-~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mn--g~~I~GR~I~Vk~A 447 (622)
...++|||+|| +++ +||++|+++|++||+|.+|+|+. +||||||+|.+.++|+.|++.|+ +..|+||+|+|.++
T Consensus 23 ~p~~~l~V~NL-p~~~~te~~L~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a 99 (112)
T 1x4f_A 23 ELGRVIHLSNL-PHSGYSDSAVLKLAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS 99 (112)
T ss_dssp CCCCEEEEESC-CCSSCCSHHHHTTTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCC-CCccCCHHHHHHHHHhcCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEC
Confidence 45789999999 987 99999999999999999999987 89999999999999999999874 56799999999999
Q ss_pred ccCCCC
Q 006992 448 KEKGKV 453 (622)
Q Consensus 448 k~K~k~ 453 (622)
+.+...
T Consensus 100 ~~~~~~ 105 (112)
T 1x4f_A 100 EKYKKL 105 (112)
T ss_dssp CSCSSS
T ss_pred cccccc
Confidence 876543
No 119
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.2e-15 Score=133.54 Aligned_cols=83 Identities=18% Similarity=0.171 Sum_probs=75.6
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCc----eeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPV----QDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V----~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
...++|||+|| ++.+|+++|+++|++||.| ..++++.+++||||||+|.+.++|++|++.|++..|+|+.|.|.+
T Consensus 23 ~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 23 EPNKVLYLKNL-SPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp SCCSEEEEECC-CTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45789999999 9999999999999999999 566666668999999999999999999999999999999999999
Q ss_pred CccCCCCc
Q 006992 447 YKEKGKVP 454 (622)
Q Consensus 447 Ak~K~k~~ 454 (622)
++++....
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpx_A 102 GKNKKQRS 109 (115)
T ss_dssp CCCCSCCC
T ss_pred ccCCCCCC
Confidence 98876543
No 120
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.60 E-value=4.5e-16 Score=133.63 Aligned_cols=82 Identities=13% Similarity=0.120 Sum_probs=74.2
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
....++|||+|| ++.+|+++|+++|++||.|.. +++.+ ++||||||+|.+.++|++|++ ||++.|.|+.|.|.
T Consensus 14 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 14 STTPFNLFIGNL-NPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp CSCSEEEEEECC-CTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 356789999999 999999999999999999998 55554 789999999999999999999 99999999999999
Q ss_pred eCccCCCCc
Q 006992 446 PYKEKGKVP 454 (622)
Q Consensus 446 ~Ak~K~k~~ 454 (622)
+++++....
T Consensus 91 ~a~~~~~~~ 99 (101)
T 1fj7_A 91 KPKGRDGTR 99 (101)
T ss_dssp CCSCCCCSS
T ss_pred EcCCCCCCC
Confidence 999877653
No 121
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.5e-15 Score=127.15 Aligned_cols=80 Identities=20% Similarity=0.180 Sum_probs=73.5
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhcc--CCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIY--GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqF--G~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
.....++|||+|| ++.+|+++|+++|++| |.|.+|+++ ||||||+|.+.++|++|++.||+..|+|++|.|.+
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~g~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 11 TMSSVKILYVRNL-MLSTSEEMIEKEFNNIKPGAVERVKKI----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp CSSCCCEEEEESC-CTTCCHHHHHHHHHTTSTTCEEEEEEC----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred ccCCcCEEEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEEe----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456799999999 9999999999999999 999999875 68999999999999999999999999999999999
Q ss_pred CccCCCC
Q 006992 447 YKEKGKV 453 (622)
Q Consensus 447 Ak~K~k~ 453 (622)
++++.+.
T Consensus 86 a~~~~~~ 92 (99)
T 2cpd_A 86 AKPVDKD 92 (99)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9887653
No 122
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.60 E-value=1.2e-15 Score=136.18 Aligned_cols=78 Identities=19% Similarity=0.133 Sum_probs=72.6
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCC---ceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGP---VQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~---V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~ 443 (622)
....++|||+|| ++++||++|+++|++||. |.+|+|+.| ++||||||+|.+.++|++|++ |+++.|+||.|.
T Consensus 14 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGL-PWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESC-CTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 456789999999 999999999999999999 899999986 679999999999999999999 899999999999
Q ss_pred EEeCcc
Q 006992 444 VKPYKE 449 (622)
Q Consensus 444 Vk~Ak~ 449 (622)
|.++..
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 999854
No 123
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.60 E-value=6.5e-16 Score=127.96 Aligned_cols=71 Identities=11% Similarity=0.136 Sum_probs=65.8
Q ss_pred CceEEEcCCCCCCC------CHHHHHHHhhccCCceeEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCe-EEE
Q 006992 373 SRQIYLTFPADSTF------REEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDA-RVL 443 (622)
Q Consensus 373 ~rtIYVGnL~~~~~------TEedLre~FsqFG~V~dVrI~~D--ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR-~I~ 443 (622)
.++|||+|| ++.+ |+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|+ +|+
T Consensus 1 ~~~l~V~nL-p~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNV-PQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESC-CCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCC-CCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 378999999 8888 77999999999999999999853 7899999999999999999999999999999 887
Q ss_pred E
Q 006992 444 V 444 (622)
Q Consensus 444 V 444 (622)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 124
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.60 E-value=1.2e-15 Score=141.00 Aligned_cols=80 Identities=18% Similarity=0.088 Sum_probs=73.9
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhccCC---ceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeE
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGP---VQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDAR 441 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~---V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~ 441 (622)
......++|||+|| ++++||++|+++|++||. |.+|+|++| ++||||||+|.+.++|++|++ ||++.|+||.
T Consensus 39 ~~~~~~~~lfVgnL-p~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGL-PWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESC-CTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34466789999999 999999999999999999 899999986 689999999999999999999 8999999999
Q ss_pred EEEEeCcc
Q 006992 442 VLVKPYKE 449 (622)
Q Consensus 442 I~Vk~Ak~ 449 (622)
|.|.++.+
T Consensus 117 i~V~~a~~ 124 (136)
T 2hgl_A 117 IEVFKSHR 124 (136)
T ss_dssp EEEEECCH
T ss_pred EEEEECCh
Confidence 99999854
No 125
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.4e-15 Score=130.02 Aligned_cols=80 Identities=18% Similarity=0.384 Sum_probs=72.1
Q ss_pred CCCCceEEEcCCCCC-CCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCc
Q 006992 370 NPASRQIYLTFPADS-TFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~-~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak 448 (622)
.+..++|||+|| ++ .+|+++|+++|++||+|.+|+|+ ||||||+|.+.++|++|++.|++..+.|++|.|.+++
T Consensus 7 ~~~~~~l~V~nl-p~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 7 IPPKSRLFIGNL-PLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp --CCEEEEEESS-TTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCCEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 356889999999 88 99999999999999999999985 7999999999999999999999999999999999998
Q ss_pred cCCCCc
Q 006992 449 EKGKVP 454 (622)
Q Consensus 449 ~K~k~~ 454 (622)
++....
T Consensus 82 ~~~~~~ 87 (96)
T 2kvi_A 82 SNARPQ 87 (96)
T ss_dssp CCCC--
T ss_pred cCCCCC
Confidence 776543
No 126
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.7e-15 Score=132.27 Aligned_cols=82 Identities=17% Similarity=0.116 Sum_probs=73.2
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
......++|||+|| ++++||++|+++|++||.| +|+|++| ++||||||+|.++++|++||+ +|++.|+||.|.|
T Consensus 10 ~~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (102)
T 1wez_A 10 FQSTTGHCVHMRGL-PYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVEL 86 (102)
T ss_dssp CCCSSSCEEEEESC-CTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 34466789999999 9999999999999999955 9999986 679999999999999999995 6999999999999
Q ss_pred EeCccCCC
Q 006992 445 KPYKEKGK 452 (622)
Q Consensus 445 k~Ak~K~k 452 (622)
.++.+...
T Consensus 87 ~~~~~~~~ 94 (102)
T 1wez_A 87 FLNSTAGT 94 (102)
T ss_dssp EEECCCCC
T ss_pred EECCCCCC
Confidence 99876654
No 127
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.59 E-value=1.2e-15 Score=139.56 Aligned_cols=85 Identities=16% Similarity=0.152 Sum_probs=78.1
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
.....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.|++..|+|++|.|
T Consensus 43 ~~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 43 DVEGMTSLKVDNL-TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp SGGGCCCEEEECC-CSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3356789999999 999999999999999999999999876 68999999999999999999999999999999999
Q ss_pred EeCccCCCCc
Q 006992 445 KPYKEKGKVP 454 (622)
Q Consensus 445 k~Ak~K~k~~ 454 (622)
.+++++....
T Consensus 122 ~~a~~~~~~~ 131 (135)
T 2lea_A 122 QMARYGRPPD 131 (135)
T ss_dssp EECCCCCCCT
T ss_pred EECCCCCCCc
Confidence 9998876654
No 128
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.59 E-value=3.2e-15 Score=130.62 Aligned_cols=77 Identities=14% Similarity=0.304 Sum_probs=71.4
Q ss_pred CCCceEEEcCCCCCC-CCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 006992 371 PASRQIYLTFPADST-FREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~-~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~ 449 (622)
...++|||++| ++. +|+++|+++|++||+|.+|+| +||||||+|.+.++|++|++.|++..|+|+.|.|.++++
T Consensus 25 ~~~~~l~V~nl-~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 25 SINSRVFIGNL-NTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp TCSSEEEECSC-CCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCCcEEEEeCC-CcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 45689999999 888 999999999999999999998 589999999999999999999999999999999999985
Q ss_pred CCC
Q 006992 450 KGK 452 (622)
Q Consensus 450 K~k 452 (622)
+..
T Consensus 100 ~~~ 102 (110)
T 1wf1_A 100 PKP 102 (110)
T ss_dssp CCS
T ss_pred CCC
Confidence 443
No 129
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.59 E-value=2.4e-15 Score=127.74 Aligned_cols=82 Identities=13% Similarity=0.084 Sum_probs=74.1
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~ 449 (622)
....++|||+|| ++.+|+++|+++|++||.|..| ...+++||||||+|.+.++|++|++.|++..|+|+.|.|.++.+
T Consensus 13 ~~~~~~l~V~nL-~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 13 VRAARTLLAKNL-SFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp TTGGGEEEEESC-CSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 356789999999 9999999999999999999888 33347899999999999999999999999999999999999988
Q ss_pred CCCC
Q 006992 450 KGKV 453 (622)
Q Consensus 450 K~k~ 453 (622)
+...
T Consensus 91 ~~~~ 94 (96)
T 1fjc_A 91 KGGT 94 (96)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7654
No 130
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.5e-15 Score=133.70 Aligned_cols=76 Identities=24% Similarity=0.269 Sum_probs=70.3
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
....+|||+|| ++++||++|+++|++| .|.+|+|+.| ++||||||+|.++++|++|+ .||++.|+||.|.|..+
T Consensus 14 ~~~~~v~V~nL-p~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGM-PFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECC-CSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 34579999999 9999999999999999 8999999986 68999999999999999999 57999999999999988
Q ss_pred cc
Q 006992 448 KE 449 (622)
Q Consensus 448 k~ 449 (622)
.+
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 54
No 131
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.59 E-value=3.5e-15 Score=125.59 Aligned_cols=77 Identities=12% Similarity=0.109 Sum_probs=71.9
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCccC
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~K 450 (622)
...++|||+|| ++++|+++|+++|++| +|.+|+|+ ++||||||+|.++++|++|++.||+..++|++|+|.++..+
T Consensus 3 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 3 SGSSGILVKNL-PQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCCEEEESC-CSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 45789999999 9999999999999999 99999996 59999999999999999999999999999999999998664
Q ss_pred C
Q 006992 451 G 451 (622)
Q Consensus 451 ~ 451 (622)
.
T Consensus 79 ~ 79 (88)
T 1wg1_A 79 A 79 (88)
T ss_dssp C
T ss_pred c
Confidence 3
No 132
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=3.1e-15 Score=126.99 Aligned_cols=81 Identities=14% Similarity=0.113 Sum_probs=75.1
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEE-eeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCc
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVR-IPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVr-I~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak 448 (622)
....++|||+|| ++.+|+++|+++|++||+|.+|+ |+.++..|.|||+|.+.++|++|++.||+..|+|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 12 RQRIRKLQIRNI-PPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp CCSCCCEEEEEE-CSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCCEEEEEcC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 345789999999 99999999999999999999995 8888777789999999999999999999999999999999999
Q ss_pred cCC
Q 006992 449 EKG 451 (622)
Q Consensus 449 ~K~ 451 (622)
++.
T Consensus 91 ~~~ 93 (96)
T 2e44_A 91 DEM 93 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 874
No 133
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.58 E-value=1.1e-15 Score=147.94 Aligned_cols=79 Identities=20% Similarity=0.402 Sum_probs=74.2
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 006992 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (622)
Q Consensus 372 ~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D--ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~ 449 (622)
..++|||+|| ++.+|+++|+++|++||.|.+|+|+.| .+||||||+|.+.++|++|++.||++.|+|++|.|.+|++
T Consensus 102 ~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIKNL-DKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceECCc-ccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 4578999999 999999999999999999999999987 4799999999999999999999999999999999999987
Q ss_pred CC
Q 006992 450 KG 451 (622)
Q Consensus 450 K~ 451 (622)
+.
T Consensus 181 ~~ 182 (213)
T 4f02_A 181 RK 182 (213)
T ss_dssp HH
T ss_pred Cc
Confidence 53
No 134
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.8e-15 Score=134.43 Aligned_cols=78 Identities=12% Similarity=0.102 Sum_probs=72.0
Q ss_pred CCCceEEE--cCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceE-----cCeEEE
Q 006992 371 PASRQIYL--TFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFV-----CDARVL 443 (622)
Q Consensus 371 ~~~rtIYV--GnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I-----~GR~I~ 443 (622)
...++||| ||| ++.+||++|+++|++||+|.+|.|+. .||||||+|.+.++|++|++.||++.| .|+.|+
T Consensus 23 ~pt~~L~V~Ng~L-~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 23 YATQSLVVANGGL-GNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp SCCSEEEEETCTG-GGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCEEEEECCCC-CCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 44688999 889 99999999999999999999999987 689999999999999999999999999 799999
Q ss_pred EEeCccCC
Q 006992 444 VKPYKEKG 451 (622)
Q Consensus 444 Vk~Ak~K~ 451 (622)
|.+++...
T Consensus 100 v~~a~~~p 107 (114)
T 2cq2_A 100 LNFVEKVQ 107 (114)
T ss_dssp EEEESCCC
T ss_pred EEecccCc
Confidence 99987544
No 135
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.57 E-value=4.8e-15 Score=138.91 Aligned_cols=85 Identities=12% Similarity=0.164 Sum_probs=75.8
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
.....++|||+|| ++.+|+++|+++|++||+|..|+|+.+ +++|||||+|.+.++|++||..||+..|.|+.|.|
T Consensus 68 ~~~~~~~l~V~nL-p~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 146 (165)
T 1rk8_A 68 RSVEGWILFVTSI-HEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146 (165)
T ss_dssp CCC-CEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456789999999 999999999999999999999999986 46899999999999999999999999999999999
Q ss_pred EeCccCCCCc
Q 006992 445 KPYKEKGKVP 454 (622)
Q Consensus 445 k~Ak~K~k~~ 454 (622)
.++.++....
T Consensus 147 ~~a~~~~~~~ 156 (165)
T 1rk8_A 147 DWCFVKGPKR 156 (165)
T ss_dssp EESEECC---
T ss_pred EEecCCCCCC
Confidence 9998877643
No 136
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.6e-15 Score=130.60 Aligned_cols=81 Identities=19% Similarity=0.301 Sum_probs=74.3
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceE--------c
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFV--------C 438 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I--------~ 438 (622)
....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..| .
T Consensus 22 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNL-PLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESC-CTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 356789999999 999999999999999999999999986 5789999999999999999999999999 6
Q ss_pred CeEEEEEeCccCC
Q 006992 439 DARVLVKPYKEKG 451 (622)
Q Consensus 439 GR~I~Vk~Ak~K~ 451 (622)
++.|.|.++.++.
T Consensus 101 ~~~l~v~~a~p~~ 113 (114)
T 1x5o_A 101 TEPLLCKFSGPSS 113 (114)
T ss_dssp SSCBEEEECCCSC
T ss_pred CCceeEEccCCCC
Confidence 8889999998653
No 137
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.57 E-value=1.2e-15 Score=123.67 Aligned_cols=71 Identities=30% Similarity=0.469 Sum_probs=67.0
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 375 tIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
||||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++. +++.|+|++|.|++|
T Consensus 1 ~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGL-SPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCC-CSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 6999999 999999999999999999999999875 5799999999999999999997 899999999999875
No 138
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.57 E-value=1.4e-15 Score=132.99 Aligned_cols=79 Identities=15% Similarity=0.060 Sum_probs=73.2
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCC---ceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEE
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGP---VQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~---V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I 442 (622)
.....++|||+|| ++++|+++|+++|++||. |.+|+|+.| ++||||||+|.+.++|++|++ ++++.|+||.|
T Consensus 7 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGL-PWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECC-CSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCC-CCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 3456789999999 999999999999999998 999999986 689999999999999999999 89999999999
Q ss_pred EEEeCcc
Q 006992 443 LVKPYKE 449 (622)
Q Consensus 443 ~Vk~Ak~ 449 (622)
.|.++.+
T Consensus 85 ~V~~a~~ 91 (107)
T 2lmi_A 85 EVYEINN 91 (107)
T ss_dssp CCEECCH
T ss_pred EEEECCH
Confidence 9999865
No 139
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.4e-15 Score=125.23 Aligned_cols=79 Identities=24% Similarity=0.384 Sum_probs=69.6
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCccC
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~K 450 (622)
...++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +||||||+|.+.++|++|+.. ...+.|++|.|.++.++
T Consensus 3 ~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 3 SGSSGVFVGRC-TGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPK 78 (88)
T ss_dssp SCCCEEEEESC-CSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCC
Confidence 35789999999 999999999999999999999999985 899999999999999865433 45669999999999887
Q ss_pred CCC
Q 006992 451 GKV 453 (622)
Q Consensus 451 ~k~ 453 (622)
...
T Consensus 79 ~~~ 81 (88)
T 1wf0_A 79 HNS 81 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 140
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.57 E-value=4.6e-15 Score=135.33 Aligned_cols=84 Identities=14% Similarity=0.171 Sum_probs=73.1
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeE--------Eeec-cCCCceEEEEECCHHHHHHHHHhCCCceEcCeE
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDV--------RIPY-QQKRMFGFVTFVYPETVKIILAKGNPHFVCDAR 441 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dV--------rI~~-DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~ 441 (622)
...++|||+|| ++.+|+++|+++|++||.|..| ++.. +++||||||+|.+.++|.+|+..||+..|.|+.
T Consensus 43 ~~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 43 EPNCRIYVKNL-AKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp SCCSEEEEEEE-CTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 45689999999 9999999999999999999874 4333 378999999999999999999999999999999
Q ss_pred EEEEeCccCCCCch
Q 006992 442 VLVKPYKEKGKVPD 455 (622)
Q Consensus 442 I~Vk~Ak~K~k~~~ 455 (622)
|.|.+++++.....
T Consensus 122 l~V~~a~~~~~~~~ 135 (143)
T 3egn_A 122 MVVQFARSARPKQD 135 (143)
T ss_dssp CEEEECCCSCC---
T ss_pred EEEEECCCCCCccC
Confidence 99999988765544
No 141
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.2e-14 Score=123.64 Aligned_cols=79 Identities=20% Similarity=0.327 Sum_probs=69.7
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D--ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
....++|||+|| ++++|+++|+++|++||+|.+| +.+ ..+ ||||+|.+.++|++|++ |+++.|+|+.|.|.++
T Consensus 5 ~~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 5 SSGLRSVFVSGF-PRGVDSAQLSEYFLAFGPVASV--VMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp CTTCCEEEEECC-CTTCCHHHHHHHGGGTSCEEEE--EECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred cCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 356789999999 9999999999999999999998 333 233 99999999999999999 9999999999999988
Q ss_pred ccCCCC
Q 006992 448 KEKGKV 453 (622)
Q Consensus 448 k~K~k~ 453 (622)
.++...
T Consensus 80 ~~~~~~ 85 (94)
T 2e5g_A 80 EQKEFQ 85 (94)
T ss_dssp CCSCCC
T ss_pred CcCCCC
Confidence 766543
No 142
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.56 E-value=7.5e-15 Score=140.36 Aligned_cols=81 Identities=9% Similarity=0.064 Sum_probs=74.6
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcC--eEEEEEeCc
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCD--ARVLVKPYK 448 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~G--R~I~Vk~Ak 448 (622)
....+|||+|| ++.+|+++|+++|++||+|++|+|..+++||||||+|.+.++|++|++.||+..|.| ++|+|.+++
T Consensus 44 s~vl~l~VgNL-~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 44 SPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CCEEEEEECSC-CSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CceEEEEEeCc-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 44578999999 999999999999999999999999876678999999999999999999999999976 999999999
Q ss_pred cCCC
Q 006992 449 EKGK 452 (622)
Q Consensus 449 ~K~k 452 (622)
++..
T Consensus 123 ~~~l 126 (164)
T 1sjr_A 123 LTSL 126 (164)
T ss_dssp SSSC
T ss_pred CCcc
Confidence 8753
No 143
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.3e-15 Score=136.17 Aligned_cols=80 Identities=21% Similarity=0.247 Sum_probs=71.7
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
....++|||+|| ++++|+++|+++|++||.|.+|.++.+ ++||||||+|.+.++|++||+ ||++.|+|+.|.|.
T Consensus 22 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 22 HEAGFCVYLKGL-PFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCEEEEECC-CTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 456689999999 999999999999999999998655543 679999999999999999999 89999999999999
Q ss_pred eCccCC
Q 006992 446 PYKEKG 451 (622)
Q Consensus 446 ~Ak~K~ 451 (622)
++.++.
T Consensus 100 ~a~~~~ 105 (124)
T 1wel_A 100 PITKKG 105 (124)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987643
No 144
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.56 E-value=8.2e-15 Score=121.77 Aligned_cols=72 Identities=18% Similarity=0.314 Sum_probs=68.1
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcc----C-------CceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcC
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIY----G-------PVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqF----G-------~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~G 439 (622)
...++|||+|| ++++|+++|+++|++| | +|.+|+++. .||||||+|.+.++|++|+ .||+..|+|
T Consensus 4 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~--~kg~afV~f~~~~~a~~A~-~l~g~~~~g 79 (87)
T 2hzc_A 4 GSARRLYVGNI-PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQG 79 (87)
T ss_dssp GGGGEEEEESC-CTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS--SSSEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC--CCcEEEEEcCCHHHHHHHH-hcCCCEECC
Confidence 45789999999 9999999999999999 8 999999998 6999999999999999999 999999999
Q ss_pred eEEEEEe
Q 006992 440 ARVLVKP 446 (622)
Q Consensus 440 R~I~Vk~ 446 (622)
+.|+|.+
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9999975
No 145
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.56 E-value=2.9e-15 Score=148.79 Aligned_cols=78 Identities=13% Similarity=0.150 Sum_probs=72.7
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhccC--CceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 372 ASRQIYLTFPADSTFREEDVSNYFSIYG--PVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 372 ~~rtIYVGnL~~~~~TEedLre~FsqFG--~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
..++|||+|| ++.+||++|+++|++|| +|++|+|++| ++||||||+|.+.++|++||+.||++.|+|+.|+|.
T Consensus 67 ~~~~lfVgnL-~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNL-TWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESC-CTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCC-CCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 5679999999 99999999999999999 9999999987 589999999999999999999999999999999999
Q ss_pred eCccC
Q 006992 446 PYKEK 450 (622)
Q Consensus 446 ~Ak~K 450 (622)
+++++
T Consensus 146 ~a~~~ 150 (229)
T 3q2s_C 146 PVNKQ 150 (229)
T ss_dssp ECCHH
T ss_pred ECCCC
Confidence 99754
No 146
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.55 E-value=3.2e-15 Score=128.47 Aligned_cols=81 Identities=20% Similarity=0.375 Sum_probs=73.1
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
...++|||+|| ++.+|+++|+++|++||.|.+|+|+.+ ++||||||+|.+.++|++|++ +++.|+|+.|.|.++
T Consensus 7 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGI-DVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 45689999999 999999999999999999999999986 578999999999999999999 899999999999999
Q ss_pred ccCCCCc
Q 006992 448 KEKGKVP 454 (622)
Q Consensus 448 k~K~k~~ 454 (622)
.++....
T Consensus 84 ~~~~~~~ 90 (102)
T 2xs2_A 84 IRKQNLS 90 (102)
T ss_dssp EECC---
T ss_pred CcCcchh
Confidence 8876543
No 147
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.3e-14 Score=124.45 Aligned_cols=82 Identities=21% Similarity=0.186 Sum_probs=72.5
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~ 443 (622)
......++|||+|| ++.+|+++|+++|+.|+ +|+++.+ ++||||||+|.+.++|++|++.|+++.|+|++|.
T Consensus 10 ~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 10 ARSQPSKTLFVKGL-SEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSCCCSSEEEECC-CTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCC-CCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34467899999999 99999999999999885 5666654 5789999999999999999999999999999999
Q ss_pred EEeCccCCCC
Q 006992 444 VKPYKEKGKV 453 (622)
Q Consensus 444 Vk~Ak~K~k~ 453 (622)
|.+++++...
T Consensus 86 V~~a~~~~~~ 95 (102)
T 2fc8_A 86 LDWAKPKGEG 95 (102)
T ss_dssp EEECCCCCSS
T ss_pred EEEecCCCCC
Confidence 9999987654
No 148
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.30 E-value=5.1e-16 Score=136.91 Aligned_cols=82 Identities=13% Similarity=0.160 Sum_probs=76.0
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCcee--------EEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEc
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQD--------VRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVC 438 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~d--------VrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~ 438 (622)
...++|||+|| ++++|+++|+++|++||.|.+ |+|+.| ++||||||+|.+.++|++|++.||+..|.
T Consensus 5 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 5 SDNNTIFVQGL-GENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 56789999999 999999999999999999999 889876 57999999999999999999999999999
Q ss_pred CeEEEEEeCccCCCC
Q 006992 439 DARVLVKPYKEKGKV 453 (622)
Q Consensus 439 GR~I~Vk~Ak~K~k~ 453 (622)
|++|.|.+++++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999876554
No 149
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.54 E-value=1.2e-14 Score=130.80 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=72.3
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCccC
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~K 450 (622)
...++|||+|+ ++|+++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.|++..|+|+.|.|.+++++
T Consensus 37 ~~~~~lfVgnl---~~te~~L~~~F~~~G~I~~v~i~~--~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 37 RKGNTLYVYGE---DMTPTLLRGAFSPFGNIIDLSMDP--PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCEEEEECS---SCCHHHHHHHHSTTCCCSCEEEET--TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCEEEEcCC---CCCHHHHHHHHHccCCEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 56789999997 599999999999999999999985 9999999999999999999999999999999999999887
Q ss_pred CCC
Q 006992 451 GKV 453 (622)
Q Consensus 451 ~k~ 453 (622)
...
T Consensus 112 ~~~ 114 (121)
T 2bz2_A 112 PML 114 (121)
T ss_dssp CC-
T ss_pred CCC
Confidence 654
No 150
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.52 E-value=2.4e-14 Score=139.55 Aligned_cols=79 Identities=22% Similarity=0.214 Sum_probs=73.5
Q ss_pred CCCceEEEcCCCC-CCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 006992 371 PASRQIYLTFPAD-STFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (622)
Q Consensus 371 ~~~rtIYVGnL~~-~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~ 449 (622)
...++|||+|| + +.+|+++|+++|++||.|.+|+|+.+ +||||||+|.+.++|++|++.||++.|.|+.|+|.+++.
T Consensus 2 ~~~~~l~V~nL-~~~~~~~~~L~~~F~~~G~v~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 2 ADSPVLMVYGL-DQSKMNCDRVFNVFCLYGNVEKVKFMKS-KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCCSEEEEECC-CTTTCCHHHHHHHHTTTSCEEEEEECTT-STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCCEEEEeCC-CcccCCHHHHHHHHHhcCCeEEEEEecC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 34689999999 7 89999999999999999999999986 589999999999999999999999999999999999975
Q ss_pred CC
Q 006992 450 KG 451 (622)
Q Consensus 450 K~ 451 (622)
+.
T Consensus 80 ~~ 81 (205)
T 3tyt_A 80 PA 81 (205)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 151
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=6.5e-15 Score=133.86 Aligned_cols=77 Identities=14% Similarity=0.106 Sum_probs=70.6
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCc----eeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPV----QDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V----~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~ 443 (622)
...++|||+|| ++++||++|+++|++||+| .+|+|++| ++||||||+|.+.++|++|++. +++.|.||.|.
T Consensus 21 ~~~~~v~V~nL-p~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGL-PFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSC-CTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 44689999999 9999999999999999986 69999986 6899999999999999999998 99999999999
Q ss_pred EEeCcc
Q 006992 444 VKPYKE 449 (622)
Q Consensus 444 Vk~Ak~ 449 (622)
|..+.+
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 998753
No 152
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.52 E-value=2.4e-14 Score=130.70 Aligned_cols=80 Identities=16% Similarity=0.261 Sum_probs=74.5
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 372 ~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
..++|||+|| ++++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.|++..+.|++|.|.++
T Consensus 2 ~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYL-PQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 4689999999 999999999999999999999999886 47899999999999999999999999999999999999
Q ss_pred ccCCC
Q 006992 448 KEKGK 452 (622)
Q Consensus 448 k~K~k 452 (622)
.++..
T Consensus 81 ~~~~~ 85 (168)
T 1b7f_A 81 RPGGE 85 (168)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 87654
No 153
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.52 E-value=2.2e-14 Score=138.89 Aligned_cols=80 Identities=16% Similarity=0.186 Sum_probs=73.3
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
...+||||||| ++++||++|+++|++||+|.+|+|++| +++|||||+|.+.++|++|++.+++..+.|+.|+|.+
T Consensus 13 ~p~~tlfVgnL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 13 YPMASLYVGDL-HPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp --CCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34679999999 999999999999999999999999986 5899999999999999999999999999999999998
Q ss_pred CccCC
Q 006992 447 YKEKG 451 (622)
Q Consensus 447 Ak~K~ 451 (622)
+....
T Consensus 92 ~~~~~ 96 (213)
T 4f02_A 92 SQRDP 96 (213)
T ss_dssp CCCCT
T ss_pred ccccc
Confidence 86543
No 154
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.52 E-value=2.7e-14 Score=129.61 Aligned_cols=79 Identities=13% Similarity=0.276 Sum_probs=73.7
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCc
Q 006992 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (622)
Q Consensus 373 ~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak 448 (622)
+++|||+|| ++++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.|++..+.|+.|.|.++.
T Consensus 2 ~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYL-PQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 689999999 999999999999999999999999886 467999999999999999999999999999999999998
Q ss_pred cCCC
Q 006992 449 EKGK 452 (622)
Q Consensus 449 ~K~k 452 (622)
++..
T Consensus 81 ~~~~ 84 (167)
T 1fxl_A 81 PSSA 84 (167)
T ss_dssp CCCG
T ss_pred CCcc
Confidence 6543
No 155
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.52 E-value=2.8e-14 Score=136.43 Aligned_cols=84 Identities=8% Similarity=0.061 Sum_probs=77.1
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
......++|||+|| ++.+|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|.|
T Consensus 83 ~~~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V 161 (177)
T 2f3j_A 83 EGVETGAKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 161 (177)
T ss_dssp SSCTTCEEEEEECC-CSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 44566789999999 999999999999999999999999986 68999999999999999999999999999999999
Q ss_pred EeCccCCC
Q 006992 445 KPYKEKGK 452 (622)
Q Consensus 445 k~Ak~K~k 452 (622)
.++.....
T Consensus 162 ~~a~~~~~ 169 (177)
T 2f3j_A 162 QLVASQID 169 (177)
T ss_dssp EEESSGGG
T ss_pred EEecCCCC
Confidence 99976543
No 156
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.52 E-value=9.9e-15 Score=129.42 Aligned_cols=77 Identities=14% Similarity=0.069 Sum_probs=67.3
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeE-----EEEE
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDAR-----VLVK 445 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~-----I~Vk 445 (622)
....+|||+|| ++++|+++|+++|++||+|.+|+|+.+ |||||+|.+.++|++||+.||+..|+|++ |+|.
T Consensus 14 r~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 14 RSENRVVVSGL-PPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ---CCEEEEEC-CSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 45689999999 999999999999999999999999985 99999999999999999999999999998 7777
Q ss_pred eCccCC
Q 006992 446 PYKEKG 451 (622)
Q Consensus 446 ~Ak~K~ 451 (622)
.+.++.
T Consensus 90 ~~~~~~ 95 (115)
T 3beg_B 90 VDGPRS 95 (115)
T ss_dssp ECC---
T ss_pred cCCCCC
Confidence 666543
No 157
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=3e-14 Score=125.73 Aligned_cols=76 Identities=16% Similarity=0.268 Sum_probs=66.5
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc-------CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-------QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D-------ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~ 443 (622)
...++|||+|| ++++|+++|+++|++||+|. ++++.+ ++||||||+|.++++|++|++.| +.++|+.+.
T Consensus 6 ~~~~~lfVgnL-p~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~--~~~~G~~~~ 81 (114)
T 2dnl_A 6 SGSRKVFVGGL-PPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC--LEEDGKLYL 81 (114)
T ss_dssp SCCCCEEEECC-CTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS--EEETTEEEE
T ss_pred CCCCEEEEcCC-CCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh--hhcCCcEEE
Confidence 56789999999 99999999999999999999 888774 56999999999999999999998 457888887
Q ss_pred EEeCccC
Q 006992 444 VKPYKEK 450 (622)
Q Consensus 444 Vk~Ak~K 450 (622)
|..+.+.
T Consensus 82 ~~~~~~~ 88 (114)
T 2dnl_A 82 CVSSPTI 88 (114)
T ss_dssp EECCSSS
T ss_pred eccCCCc
Confidence 7765543
No 158
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.52 E-value=2.2e-14 Score=130.05 Aligned_cols=78 Identities=19% Similarity=0.335 Sum_probs=73.2
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCccC
Q 006992 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (622)
Q Consensus 374 rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~K 450 (622)
|+|||+|| +.++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.|++..+.|+.|.|.++.++
T Consensus 1 R~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNL-DKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEE-ETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCC-CCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 68999999 999999999999999999999999886 57899999999999999999999999999999999999765
Q ss_pred CC
Q 006992 451 GK 452 (622)
Q Consensus 451 ~k 452 (622)
..
T Consensus 80 ~~ 81 (166)
T 3md3_A 80 QQ 81 (166)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 159
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.51 E-value=5e-15 Score=137.33 Aligned_cols=81 Identities=14% Similarity=0.053 Sum_probs=72.7
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
....++|||+|| ++++||++|+++|++|| |++|+|++| ++||||||+|.+.++|++|| .+|++.|.||.|.|.+
T Consensus 43 ~~~~~~lfV~nL-p~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGL-PYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSC-CTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 355689999999 99999999999999999 779999986 68999999999999999999 7799999999999999
Q ss_pred CccCCCC
Q 006992 447 YKEKGKV 453 (622)
Q Consensus 447 Ak~K~k~ 453 (622)
+.++...
T Consensus 120 a~~~~~~ 126 (139)
T 2hgn_A 120 NSTTGAS 126 (139)
T ss_dssp CCCSCC-
T ss_pred CCCCCCC
Confidence 8876654
No 160
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.50 E-value=4.5e-14 Score=128.04 Aligned_cols=80 Identities=10% Similarity=0.169 Sum_probs=74.3
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
.....++|||+|| +..+|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|.+|+..||+..|+|++|.|
T Consensus 83 ~~~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 83 SSDDTFNLFVGDL-NVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCTTCEEEEEESC-CTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCceEEECCC-CCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 3456789999999 999999999999999999999999876 57999999999999999999999999999999999
Q ss_pred EeCcc
Q 006992 445 KPYKE 449 (622)
Q Consensus 445 k~Ak~ 449 (622)
.+|++
T Consensus 162 ~~a~~ 166 (166)
T 3md3_A 162 NWAAK 166 (166)
T ss_dssp EESCC
T ss_pred EecCC
Confidence 99863
No 161
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.50 E-value=5.2e-14 Score=131.82 Aligned_cols=83 Identities=24% Similarity=0.364 Sum_probs=71.3
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
....++|||+|| ++.+|+++|+++|++||.|.+|+|+.| +++|||||+|.+.++|.+|+.. +++.|+|+.|.|.
T Consensus 101 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~ 178 (196)
T 1l3k_A 101 HLTVKKIFVGGI-KEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVR 178 (196)
T ss_dssp --CCSEEEEECC-TTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEE
T ss_pred CCCcceEEEeCC-CCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 345689999999 999999999999999999999999986 5799999999999999999998 7999999999999
Q ss_pred eCccCCCCc
Q 006992 446 PYKEKGKVP 454 (622)
Q Consensus 446 ~Ak~K~k~~ 454 (622)
++.++....
T Consensus 179 ~a~~k~~~~ 187 (196)
T 1l3k_A 179 KALSKQEMA 187 (196)
T ss_dssp ECC------
T ss_pred ecCChhHhc
Confidence 999887654
No 162
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.50 E-value=1.3e-14 Score=132.67 Aligned_cols=76 Identities=16% Similarity=0.160 Sum_probs=69.6
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCce--eEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQ--DVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~--dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
...++|||+|| ++++||++|+++|++| .|. +|+|++| ++||||||+|.++++|++|++. ++..|+||.|.|.
T Consensus 40 ~~~~~lfVgnL-p~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGL-PFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECC-CTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 55789999999 9999999999999999 677 9999986 6899999999999999999997 7799999999999
Q ss_pred eCcc
Q 006992 446 PYKE 449 (622)
Q Consensus 446 ~Ak~ 449 (622)
++.+
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8754
No 163
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.50 E-value=2.2e-14 Score=131.12 Aligned_cols=78 Identities=21% Similarity=0.356 Sum_probs=72.8
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 372 ~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
..++|||+|| ++.+|+++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++ +++..|+|++|.|.+|
T Consensus 86 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 86 KTGKIFVGGI-GPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp HCEEEEEEEE-CTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred CCCeEEECCC-CCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence 4578999999 999999999999999999999999876 579999999999999999998 7999999999999999
Q ss_pred ccCC
Q 006992 448 KEKG 451 (622)
Q Consensus 448 k~K~ 451 (622)
.+|.
T Consensus 164 ~pk~ 167 (167)
T 2cjk_A 164 EPRH 167 (167)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8863
No 164
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.50 E-value=6.3e-14 Score=129.24 Aligned_cols=80 Identities=10% Similarity=0.086 Sum_probs=73.2
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCce-EEEEECCHHHHHHHHHhCCCceEcC--eEEEEEeC
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMF-GFVTFVYPETVKIILAKGNPHFVCD--ARVLVKPY 447 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGF-GFVtF~~~e~A~~Al~~mng~~I~G--R~I~Vk~A 447 (622)
...-+|||+|| ++.+|+++|+++|++||+|.+|+|+. +.||| |||+|.+.++|++|++.|||..|.| +.|+|.++
T Consensus 26 s~VL~I~V~NL-~~~vte~~L~~lFs~yG~V~~V~i~~-~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 26 SPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp CSEEEEEEESC-CSCCCHHHHHHHHTTSSCEEEEEEEE-ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred CceEEEEECCC-CCCCCHHHHHHHHhCcCCEEEEEEEc-CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 45568999999 99999999999999999999999876 46788 9999999999999999999999998 99999999
Q ss_pred ccCCC
Q 006992 448 KEKGK 452 (622)
Q Consensus 448 k~K~k 452 (622)
+++.-
T Consensus 104 k~~~l 108 (130)
T 3zzy_A 104 KLTSL 108 (130)
T ss_dssp SCSSC
T ss_pred CCCce
Confidence 87653
No 165
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.49 E-value=3.6e-14 Score=138.77 Aligned_cols=87 Identities=14% Similarity=0.259 Sum_probs=78.9
Q ss_pred CCCCCCCCCCCceEEEcCCCCC-CCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeE
Q 006992 363 NGSAGIVNPASRQIYLTFPADS-TFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDAR 441 (622)
Q Consensus 363 ~g~~g~~~~~~rtIYVGnL~~~-~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~ 441 (622)
|+..+...+..++|||+|| ++ ++|+++|+++|++||+|.+|+|+.++ ||||||+|.+.++|++|++.|++..|.|+.
T Consensus 24 ~~~p~~~~~~~~~l~V~nL-p~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 101 (229)
T 2adc_A 24 IAIPGLAGAGNSVLLVSNL-NPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKP 101 (229)
T ss_dssp CCCGGGGCCCCSEEEEESC-CTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBCSSSB
T ss_pred cCCCCCCCCCCCEEEEeCC-CcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 4444555678899999999 87 99999999999999999999999975 899999999999999999999999999999
Q ss_pred EEEEeCccCC
Q 006992 442 VLVKPYKEKG 451 (622)
Q Consensus 442 I~Vk~Ak~K~ 451 (622)
|.|.++..+.
T Consensus 102 l~v~~a~~~~ 111 (229)
T 2adc_A 102 IRITLSKHQN 111 (229)
T ss_dssp CEEECCSCCC
T ss_pred EEEEEecCcc
Confidence 9999998653
No 166
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.49 E-value=1.6e-13 Score=125.37 Aligned_cols=77 Identities=12% Similarity=-0.009 Sum_probs=70.1
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCce-EEEEECCHHHHHHHHHhCCCceEcC--eEEEEEeCcc
Q 006992 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMF-GFVTFVYPETVKIILAKGNPHFVCD--ARVLVKPYKE 449 (622)
Q Consensus 373 ~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGF-GFVtF~~~e~A~~Al~~mng~~I~G--R~I~Vk~Ak~ 449 (622)
.-.|||+|| ++.+|+++|+++|++||+|.+|+|+. + +|| |||+|.+.++|+.|++.|||..|.| +.|+|.+|++
T Consensus 25 vl~l~V~NL-~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 25 VLLLSIQNP-LYPITVDVLYTVCNPVGKVQRIVIFK-R-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARP 101 (124)
T ss_dssp EEEEEEESC-CSCCCHHHHHHHHTTTSCEEEEEEEE-S-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSC
T ss_pred EEEEEEcCc-CCCCCHHHHHHHHHhcCCEEEEEEEe-C-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecC
Confidence 345789999 99999999999999999999999976 3 597 9999999999999999999999988 6999999988
Q ss_pred CCC
Q 006992 450 KGK 452 (622)
Q Consensus 450 K~k 452 (622)
+.-
T Consensus 102 ~~l 104 (124)
T 2e5i_A 102 TRL 104 (124)
T ss_dssp SCC
T ss_pred Ccc
Confidence 764
No 167
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.49 E-value=6.1e-14 Score=131.55 Aligned_cols=82 Identities=13% Similarity=0.263 Sum_probs=76.6
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
...++|||+|| ++.+|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|++|++.|++..|+|+.|.|.+
T Consensus 112 ~~~~~l~v~nl-~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 112 DSAHKLFIGGL-PNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp CCCCEEEEECC-CTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 56789999999 999999999999999999999999976 4699999999999999999999999999999999999
Q ss_pred CccCCCC
Q 006992 447 YKEKGKV 453 (622)
Q Consensus 447 Ak~K~k~ 453 (622)
+.++.+.
T Consensus 191 a~~~~~~ 197 (198)
T 2yh0_A 191 ASVGAKN 197 (198)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 9987654
No 168
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.49 E-value=6.3e-14 Score=131.30 Aligned_cols=82 Identities=22% Similarity=0.295 Sum_probs=73.5
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
.....++|||+|| ++++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++. +++.|.|+.|.|
T Consensus 9 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 9 EPEQLRKLFIGGL-SFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCGGGGEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 3456889999999 999999999999999999999999986 4789999999999999999988 899999999999
Q ss_pred EeCccCCC
Q 006992 445 KPYKEKGK 452 (622)
Q Consensus 445 k~Ak~K~k 452 (622)
.++..+..
T Consensus 87 ~~~~~~~~ 94 (196)
T 1l3k_A 87 KRAVSRED 94 (196)
T ss_dssp EECCC---
T ss_pred ecccCccc
Confidence 99876543
No 169
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.48 E-value=6.4e-14 Score=133.17 Aligned_cols=82 Identities=12% Similarity=0.246 Sum_probs=75.9
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
...++|||+|| +..+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|.+|++.||+..|+|+.|.|.+
T Consensus 123 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~ 201 (216)
T 2qfj_A 123 RAFNRIYVASV-HQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 201 (216)
T ss_dssp TTSCEEEEECC-CTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEE
T ss_pred CCCcEEEEeCC-CCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEE
Confidence 45689999999 999999999999999999999999986 5699999999999999999999999999999999999
Q ss_pred CccCCCC
Q 006992 447 YKEKGKV 453 (622)
Q Consensus 447 Ak~K~k~ 453 (622)
+.++...
T Consensus 202 a~~~~~~ 208 (216)
T 2qfj_A 202 AVTPPMP 208 (216)
T ss_dssp CSSCSST
T ss_pred ecCCCCC
Confidence 9887543
No 170
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.47 E-value=6e-14 Score=128.76 Aligned_cols=76 Identities=14% Similarity=0.323 Sum_probs=71.9
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
...++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|++|.|.+
T Consensus 92 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 92 PGAHKLFIGGL-PNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp TTTTCEEEECC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEEcC-CCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 45789999999 999999999999999999999999886 4689999999999999999999999999999999998
Q ss_pred C
Q 006992 447 Y 447 (622)
Q Consensus 447 A 447 (622)
|
T Consensus 171 A 171 (172)
T 2g4b_A 171 A 171 (172)
T ss_dssp C
T ss_pred C
Confidence 7
No 171
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.46 E-value=1.6e-13 Score=136.87 Aligned_cols=82 Identities=16% Similarity=0.254 Sum_probs=75.7
Q ss_pred CCCCceEEEcCCCCCCCCHHHHH----HHhhccCCceeEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 370 NPASRQIYLTFPADSTFREEDVS----NYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLr----e~FsqFG~V~dVrI~~D-ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
....++|||+|| ++++|+++|+ ++|++||.|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 6 ~~~~~~l~V~nl-p~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 6 TRPNHTIYINNL-NEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 466899999999 9999999977 89999999999999874 78999999999999999999999999999999999
Q ss_pred EeCccCCC
Q 006992 445 KPYKEKGK 452 (622)
Q Consensus 445 k~Ak~K~k 452 (622)
.+++.+..
T Consensus 85 ~~a~~~~~ 92 (282)
T 3pgw_A 85 QYAKTDSD 92 (282)
T ss_pred EEeccCcc
Confidence 99966554
No 172
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.46 E-value=1.3e-13 Score=149.08 Aligned_cols=81 Identities=16% Similarity=0.358 Sum_probs=75.7
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
...++|||+|| ++.+|+++|+++|++||+|+.|.|+.+ +++|||||+|.+.++|.+||..||++.|+|+.|.|.+
T Consensus 100 ~~~~~lfV~nL-~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 100 DAFKTLFVARV-NYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45689999999 999999999999999999999999976 5799999999999999999999999999999999999
Q ss_pred CccCCC
Q 006992 447 YKEKGK 452 (622)
Q Consensus 447 Ak~K~k 452 (622)
+.++..
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 987654
No 173
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.45 E-value=1.1e-13 Score=131.60 Aligned_cols=82 Identities=17% Similarity=0.400 Sum_probs=74.5
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 372 ~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
..++|||+|| +.++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.|++..|.|+.|.|.++
T Consensus 27 ~~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 27 IMSRVYVGSI-YYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHTEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred cCCEEEEECC-CCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 4689999999 999999999999999999999999876 58999999999999999999999999999999999998
Q ss_pred ccCCCCc
Q 006992 448 KEKGKVP 454 (622)
Q Consensus 448 k~K~k~~ 454 (622)
..+....
T Consensus 106 ~~~~~~~ 112 (216)
T 2qfj_A 106 SNIGQAQ 112 (216)
T ss_dssp SCCGGGH
T ss_pred CCccccc
Confidence 7765443
No 174
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=3.8e-13 Score=118.51 Aligned_cols=84 Identities=11% Similarity=0.122 Sum_probs=71.9
Q ss_pred CCCCCceEEEcCCCCCCC-----------CHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceE
Q 006992 369 VNPASRQIYLTFPADSTF-----------REEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFV 437 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~-----------TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I 437 (622)
....+++|+|.|| -... ++++|+++|++||+|.+|.|+...+||||||+|.+.++|++|+..||+..|
T Consensus 11 ~~~~s~~l~l~Nl-~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 11 RMRHERVVIIKNM-FHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCCSCCEEEEESS-CCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCCceEEEEEcC-CCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3456899999999 3322 258999999999999999774335899999999999999999999999999
Q ss_pred cCeEEEEEeCccCCCC
Q 006992 438 CDARVLVKPYKEKGKV 453 (622)
Q Consensus 438 ~GR~I~Vk~Ak~K~k~ 453 (622)
+||.|.|.++.++.+.
T Consensus 90 ~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 90 GGRQITAQAWDGTTDY 105 (112)
T ss_dssp TTEECEEEECCSCCCS
T ss_pred CCcEEEEEEeCCCCCc
Confidence 9999999999886543
No 175
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.45 E-value=2.4e-13 Score=119.99 Aligned_cols=79 Identities=15% Similarity=0.061 Sum_probs=69.6
Q ss_pred CCCceEEEcCCCCC----CCCHHHHHHHhhccCCceeEEeecc-----CCCceEEEEECCHHHHHHHHHhCCCceEcCeE
Q 006992 371 PASRQIYLTFPADS----TFREEDVSNYFSIYGPVQDVRIPYQ-----QKRMFGFVTFVYPETVKIILAKGNPHFVCDAR 441 (622)
Q Consensus 371 ~~~rtIYVGnL~~~----~~TEedLre~FsqFG~V~dVrI~~D-----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~ 441 (622)
..+++|+|.|+... +.++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|.+|++.|||..++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 45789999999321 2378999999999999999999875 57999999999999999999999999999999
Q ss_pred EEEEeCcc
Q 006992 442 VLVKPYKE 449 (622)
Q Consensus 442 I~Vk~Ak~ 449 (622)
|.|.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999854
No 176
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.45 E-value=1.7e-13 Score=132.65 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=69.8
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCc
Q 006992 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (622)
Q Consensus 372 ~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak 448 (622)
..++|||+|| ++++|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.++ +.++|+.|.|.+++
T Consensus 108 ~~~~l~V~nL-p~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGF-PTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECC-CTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETT
T ss_pred ccCEEEecCC-CCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhH
Confidence 3589999999 999999999999999999999999985 579999999999999999998854 69999999999876
Q ss_pred c
Q 006992 449 E 449 (622)
Q Consensus 449 ~ 449 (622)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 5
No 177
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.44 E-value=1.4e-13 Score=126.18 Aligned_cols=80 Identities=19% Similarity=0.264 Sum_probs=72.3
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc------CCCceEEEEECCHHHHHHHHHhCCCceEc---CeEE
Q 006992 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ------QKRMFGFVTFVYPETVKIILAKGNPHFVC---DARV 442 (622)
Q Consensus 372 ~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D------ksRGFGFVtF~~~e~A~~Al~~mng~~I~---GR~I 442 (622)
..++|||+|| ++++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.|++..+. ++.+
T Consensus 2 ~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQV-PRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 4689999999 999999999999999999999999986 57899999999999999999999998876 7888
Q ss_pred EEEeCccCCC
Q 006992 443 LVKPYKEKGK 452 (622)
Q Consensus 443 ~Vk~Ak~K~k 452 (622)
.|.++..+..
T Consensus 81 ~~~~~~~~~~ 90 (175)
T 3nmr_A 81 QMKPADSEKN 90 (175)
T ss_dssp EEEECGGGCC
T ss_pred EEcccccccc
Confidence 8888876554
No 178
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.43 E-value=1.2e-13 Score=130.72 Aligned_cols=78 Identities=14% Similarity=0.261 Sum_probs=73.2
Q ss_pred CCceEEEcCCCCC-CCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCccC
Q 006992 372 ASRQIYLTFPADS-TFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (622)
Q Consensus 372 ~~rtIYVGnL~~~-~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~K 450 (622)
..++|||+|| ++ .+|+++|+++|++||.|.+|+|+.++ ||||||+|.+.++|++|++.|++..|.|+.|.|.++..+
T Consensus 2 ~~~~l~v~nl-p~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNL-NPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECC-CSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 3689999999 87 99999999999999999999999975 899999999999999999999999999999999999865
Q ss_pred C
Q 006992 451 G 451 (622)
Q Consensus 451 ~ 451 (622)
.
T Consensus 80 ~ 80 (198)
T 1qm9_A 80 N 80 (198)
T ss_dssp S
T ss_pred C
Confidence 4
No 179
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.43 E-value=2.3e-13 Score=125.95 Aligned_cols=74 Identities=11% Similarity=0.155 Sum_probs=65.3
Q ss_pred ceEEEcCC---CCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECC----HHH----HHHHHH--hCCCce
Q 006992 374 RQIYLTFP---ADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVY----PET----VKIILA--KGNPHF 436 (622)
Q Consensus 374 rtIYVGnL---~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~----~e~----A~~Al~--~mng~~ 436 (622)
++||||+| .++.++|++|+++|++||+|.+|+++.| ++||||||+|.+ +++ |.+|+. .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 4568999999999999999999999998 789999999996 333 888988 789999
Q ss_pred EcCeEEEEEeC
Q 006992 437 VCDARVLVKPY 447 (622)
Q Consensus 437 I~GR~I~Vk~A 447 (622)
|+||+|+|..-
T Consensus 83 I~Gr~irV~ln 93 (136)
T 2j8a_A 83 IMGFKFEVILN 93 (136)
T ss_dssp ETTEEEEEEEC
T ss_pred ecCcEEEEEEC
Confidence 99999999853
No 180
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.43 E-value=8.1e-14 Score=139.06 Aligned_cols=79 Identities=19% Similarity=0.304 Sum_probs=71.4
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhC-CCceEc---CeEEEE
Q 006992 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKG-NPHFVC---DARVLV 444 (622)
Q Consensus 372 ~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~m-ng~~I~---GR~I~V 444 (622)
..++|||+|| +..+|+++|+++|++||+|.+|+|+.| +++|||||+|.+.++|.+|+..| ++..+. |++|.|
T Consensus 95 ~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNL-SPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCC-CCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 3679999999 999999999999999999999999986 67999999999999999999999 556665 999999
Q ss_pred EeCccCC
Q 006992 445 KPYKEKG 451 (622)
Q Consensus 445 k~Ak~K~ 451 (622)
.++.++.
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9997653
No 181
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.43 E-value=1.6e-13 Score=125.34 Aligned_cols=76 Identities=24% Similarity=0.426 Sum_probs=69.9
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 372 ~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
..++|||+|| ++++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++. ++.++|+.|.|.++
T Consensus 2 ~~~~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGL-NWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSC-CTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCcEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 3689999999 999999999999999999999999886 6899999999999999999996 57999999999988
Q ss_pred ccC
Q 006992 448 KEK 450 (622)
Q Consensus 448 k~K 450 (622)
.++
T Consensus 79 ~~~ 81 (167)
T 2cjk_A 79 IPR 81 (167)
T ss_dssp CCH
T ss_pred cch
Confidence 653
No 182
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.43 E-value=2e-13 Score=126.17 Aligned_cols=80 Identities=14% Similarity=0.091 Sum_probs=72.7
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~ 449 (622)
....++|||+|| +..+|+++|+++|++||.|..| ....++||||||+|.+.++|.+|+..|++..|+|+.|.|.++.+
T Consensus 96 ~~~~~~l~v~nl-p~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 96 VRAARTLLAKNL-SFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp TGGGGEEEEESC-CSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred cccCCEEEEeCC-CCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 456789999999 9999999999999999999887 33347899999999999999999999999999999999999988
Q ss_pred CC
Q 006992 450 KG 451 (622)
Q Consensus 450 K~ 451 (622)
|.
T Consensus 174 k~ 175 (175)
T 1fje_B 174 KG 175 (175)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 183
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=2.7e-13 Score=119.10 Aligned_cols=77 Identities=9% Similarity=0.095 Sum_probs=68.5
Q ss_pred CCCceEEEcCCCCCCCCHHH----HHHHhhcc-CCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 371 PASRQIYLTFPADSTFREED----VSNYFSIY-GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEed----Lre~FsqF-G~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
+..+.|||+|| ++.+++++ |+++|++| |+|.+| ..|||||+|.+.++|++|++.|++..|.||+|+|.
T Consensus 7 p~~T~lYV~NL-~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 7 GCHTLLYVYNL-PANKDGKSVSNRLRRLSDNCGGKVLSI------TGCSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp CSSEEEEEESC-CTTSCHHHHHHHHHHHHHTTTCCEEEC------CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CcceEEEEeCC-CCcCCHHHHHHHHHHHHHHcCCeeEEE------ecCEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 44445999999 99999988 55899999 599999 24999999999999999999999999999999999
Q ss_pred eCccCCCCc
Q 006992 446 PYKEKGKVP 454 (622)
Q Consensus 446 ~Ak~K~k~~ 454 (622)
+|+.+.+.-
T Consensus 80 ~A~~~sd~~ 88 (96)
T 2diu_A 80 FTPKNRELC 88 (96)
T ss_dssp SSCCSCCCC
T ss_pred ecCCCccee
Confidence 999887653
No 184
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.42 E-value=4.6e-13 Score=133.56 Aligned_cols=77 Identities=17% Similarity=0.155 Sum_probs=72.3
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEc-CeEEEEEeCc
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVC-DARVLVKPYK 448 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~-GR~I~Vk~Ak 448 (622)
....++|||+|| +..+|+++|+++|++||.|.+|+|+.++ +|||||+|.+.++|.+|++.||+..|. |+.|+|.+++
T Consensus 204 ~~~~~~l~v~nl-~~~~~~~~l~~~F~~~G~i~~v~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 204 NPPNHILFLTNL-PEETNELMLSMLFNQFPGFKEVRLVPGR-HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCCEEEEeCC-CCcCCHHHHHHHHHhcCCeEEEEEecCC-CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 456789999999 9999999999999999999999999854 699999999999999999999999999 9999999986
No 185
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.42 E-value=2.3e-13 Score=124.71 Aligned_cols=76 Identities=20% Similarity=0.304 Sum_probs=70.4
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEc---CeEEEE
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVC---DARVLV 444 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~---GR~I~V 444 (622)
...++|||+|| +..+|+++|+++|++||.|.+|+|+.+ ++||||||+|.+.++|.+|++.||+..+. |++|.|
T Consensus 93 ~~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMI-SKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCC-CCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 46789999999 999999999999999999999999986 57999999999999999999999998776 499999
Q ss_pred EeC
Q 006992 445 KPY 447 (622)
Q Consensus 445 k~A 447 (622)
.+|
T Consensus 172 ~~a 174 (175)
T 3nmr_A 172 KFA 174 (175)
T ss_dssp EEC
T ss_pred Eec
Confidence 987
No 186
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.41 E-value=3.9e-13 Score=122.59 Aligned_cols=77 Identities=17% Similarity=0.227 Sum_probs=71.5
Q ss_pred CCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcC--eEEE
Q 006992 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCD--ARVL 443 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~G--R~I~ 443 (622)
....++|||+|| +..+|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|.+|++.|++..|.| ++|.
T Consensus 86 ~~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 86 SIKDTNLYVTNL-PRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 164 (168)
T ss_dssp TTTTCEEEEESC-CTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred cCCCCCEEEeCC-CCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEE
Confidence 356789999999 899999999999999999999999886 468999999999999999999999999988 9999
Q ss_pred EEeC
Q 006992 444 VKPY 447 (622)
Q Consensus 444 Vk~A 447 (622)
|.+|
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9886
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.40 E-value=5.6e-13 Score=133.07 Aligned_cols=87 Identities=9% Similarity=0.001 Sum_probs=78.7
Q ss_pred CCCCceEEEcCCCCCCC-CHHHHHHHhhccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 370 NPASRQIYLTFPADSTF-REEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~~-TEedLre~FsqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
....++|||+|| ++.+ |+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|.+|+..||+..|+|+.|.|.
T Consensus 181 ~~~~~~l~v~nl-p~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 181 LLHSRCLCVDRL-PPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTSCSEEEEECC-CTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCccEEEEecC-CcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 356789999999 8885 99999999999999999999886 579999999999999999999999999999999999
Q ss_pred eCccCCCCchHH
Q 006992 446 PYKEKGKVPDKY 457 (622)
Q Consensus 446 ~Ak~K~k~~~~~ 457 (622)
++.++......+
T Consensus 260 ~a~~~~~~~~~~ 271 (284)
T 3smz_A 260 FCAPGPPGRSML 271 (284)
T ss_dssp ECCSSSCHHHHH
T ss_pred EecCCCcccchh
Confidence 999887755443
No 188
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.39 E-value=5e-13 Score=121.26 Aligned_cols=76 Identities=21% Similarity=0.243 Sum_probs=70.0
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeE--EEE
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDAR--VLV 444 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~--I~V 444 (622)
...++|||+|| +..+|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|.+|++.||+..|.|+. |.|
T Consensus 86 ~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 86 IRDANLYVSGL-PKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GTTCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred CCCCcEEECCC-CCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 45689999999 999999999999999999999999876 46899999999999999999999999999975 888
Q ss_pred EeC
Q 006992 445 KPY 447 (622)
Q Consensus 445 k~A 447 (622)
.+|
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 189
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.38 E-value=9.6e-13 Score=120.73 Aligned_cols=76 Identities=17% Similarity=0.292 Sum_probs=69.7
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhcc----C-------CceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCe
Q 006992 372 ASRQIYLTFPADSTFREEDVSNYFSIY----G-------PVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDA 440 (622)
Q Consensus 372 ~~rtIYVGnL~~~~~TEedLre~FsqF----G-------~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR 440 (622)
..++|||+|| ++++|+++|+++|++| | .|.++++.. +||||||+|.++++|++|+ .++++.|.|+
T Consensus 3 ~~~~l~V~nL-p~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~~g~ 78 (172)
T 2g4b_A 3 SARRLYVGNI-PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQGQ 78 (172)
T ss_dssp GGGEEEEESC-CTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET--TTTEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred cccEEEEcCC-CcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC--CCCEEEEEeCCHHHHHHHH-HhCCcEecCc
Confidence 4689999999 9999999999999999 7 788888876 8999999999999999999 8999999999
Q ss_pred EEEEEeCccCC
Q 006992 441 RVLVKPYKEKG 451 (622)
Q Consensus 441 ~I~Vk~Ak~K~ 451 (622)
.|.|.++....
T Consensus 79 ~i~v~~~~~~~ 89 (172)
T 2g4b_A 79 SLKIRRPHDYQ 89 (172)
T ss_dssp ECEEECCSSCC
T ss_pred eeeecCCcccC
Confidence 99999876553
No 190
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.38 E-value=9.4e-13 Score=131.36 Aligned_cols=79 Identities=18% Similarity=0.242 Sum_probs=73.7
Q ss_pred CCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCc
Q 006992 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak 448 (622)
.....++|||+|| ++++|+++|+++|++||.|.+|+|.. +||||||+|.+.++|++|+..+++..|.|+.|.|.++.
T Consensus 18 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~--~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 18 TYTQRCRLFVGNL-PTDITEEDFKRLFERYGEPSEVFINR--DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp SSCGGGEEEEESC-CTTCCHHHHHHHTGGGCCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEeC--CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 3356789999999 99999999999999999999999987 79999999999999999999999999999999999987
Q ss_pred cC
Q 006992 449 EK 450 (622)
Q Consensus 449 ~K 450 (622)
+.
T Consensus 95 ~~ 96 (261)
T 3sde_A 95 HG 96 (261)
T ss_dssp CS
T ss_pred cC
Confidence 64
No 191
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.38 E-value=1.1e-12 Score=122.96 Aligned_cols=79 Identities=16% Similarity=0.280 Sum_probs=69.5
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhcc----C-------CceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcC
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIY----G-------PVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqF----G-------~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~G 439 (622)
...++|||+|| ++++|+++|+++|++| | .|.++++.. +||||||+|.+.++|++|+ .|+++.|.|
T Consensus 2 ~~~~~l~V~nL-p~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~--~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 2 AMARRLYVGNI-PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp --CCEEEEESC-CTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET--TTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred CceeEEEEcCC-CCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC--CCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 35789999999 9999999999999999 5 667777655 8999999999999999999 889999999
Q ss_pred eEEEEEeCccCCCC
Q 006992 440 ARVLVKPYKEKGKV 453 (622)
Q Consensus 440 R~I~Vk~Ak~K~k~ 453 (622)
+.|.|.++..+...
T Consensus 78 ~~i~v~~~~~~~~~ 91 (198)
T 2yh0_A 78 QSLKIRRPHDYQPL 91 (198)
T ss_dssp EEEEEECCCCCCCC
T ss_pred ceEEEeCCCCCCCC
Confidence 99999998776443
No 192
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.37 E-value=1.1e-12 Score=131.48 Aligned_cols=80 Identities=16% Similarity=0.275 Sum_probs=74.4
Q ss_pred CCCCceEEEcCCCCCC-CCHHHHHHHhhccCCceeEEeecc-----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 006992 370 NPASRQIYLTFPADST-FREEDVSNYFSIYGPVQDVRIPYQ-----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (622)
Q Consensus 370 ~~~~rtIYVGnL~~~~-~TEedLre~FsqFG~V~dVrI~~D-----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~ 443 (622)
....++|||+|| ++. +|+++|+++|++||.|.+|+|+.+ ++||||||+|.+.++|.+|+ .||+..|+|+.|.
T Consensus 207 ~~~~~~l~v~nl-p~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 207 TLEGREIMIRNL-STELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp CCTTTEEEEEEE-CTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred CCCCceEEEECC-CcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 456789999999 889 999999999999999999999875 46999999999999999999 9999999999999
Q ss_pred EEeCccCC
Q 006992 444 VKPYKEKG 451 (622)
Q Consensus 444 Vk~Ak~K~ 451 (622)
|.++++|.
T Consensus 285 V~~a~~k~ 292 (292)
T 2ghp_A 285 VSLADKKP 292 (292)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 99998873
No 193
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.36 E-value=5.9e-13 Score=122.98 Aligned_cols=83 Identities=13% Similarity=0.127 Sum_probs=72.0
Q ss_pred CCCCCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeec---cCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 006992 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY---QQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (622)
Q Consensus 368 ~~~~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~---DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~V 444 (622)
......++|||+|| ++++|+++|+++|++||.|..+.|.. +++||||||+|.+.++|++|++ |++..|.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNL-NPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECC-CTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCC-CCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEE
Confidence 34567899999999 99999999999999999887732222 3799999999999999999995 8999999999999
Q ss_pred EeCccCCC
Q 006992 445 KPYKEKGK 452 (622)
Q Consensus 445 k~Ak~K~k 452 (622)
.++.++..
T Consensus 86 ~~~~~~~~ 93 (175)
T 1fje_B 86 EKPKGRDS 93 (175)
T ss_dssp ECCCCSSC
T ss_pred ecCCCccc
Confidence 99987654
No 194
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=3.5e-12 Score=112.09 Aligned_cols=82 Identities=10% Similarity=0.171 Sum_probs=68.3
Q ss_pred CCCCCceEEEcCCCC------CCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEE
Q 006992 369 VNPASRQIYLTFPAD------STFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~------~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I 442 (622)
.....++|-|..... ..+||++|+++|++||+|.+|+|+. ++||||||+|.+.++|+.|++.++ .+.|+.|
T Consensus 6 ~~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l 82 (100)
T 2d9o_A 6 SGQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNEV--GLVDNPL 82 (100)
T ss_dssp CCCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTCC--BCSSSBC
T ss_pred CCCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhcC--CCCCCeE
Confidence 344566777766521 3589999999999999999999984 689999999999999999999854 4689999
Q ss_pred EEEeCccCCCC
Q 006992 443 LVKPYKEKGKV 453 (622)
Q Consensus 443 ~Vk~Ak~K~k~ 453 (622)
.|.|++++...
T Consensus 83 ~V~~a~~~~~~ 93 (100)
T 2d9o_A 83 KISWLEGQPQD 93 (100)
T ss_dssp EEECSSCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999877654
No 195
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.33 E-value=1.3e-12 Score=123.41 Aligned_cols=78 Identities=21% Similarity=0.202 Sum_probs=72.6
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccC-CceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEc-CeEEEEEeCc
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYG-PVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVC-DARVLVKPYK 448 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG-~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~-GR~I~Vk~Ak 448 (622)
+..++|||+|| +..+|+++|+++|++|| .|.+|+|+.+ .||||||+|.+.++|.+|+..|++..|+ |+.|.|.+++
T Consensus 118 ~~~~~l~v~nl-~~~~~~~~l~~~f~~~G~~v~~v~i~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 118 PPSATLHLSNI-PPSVSEEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CCCCEEEECCC-CTTCCHHHHHHHHHHTTSCCCEEEESST-TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred CCccEEEEeCC-CCCCCHHHHHHHHHHcCCCceEEEEEeC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 45799999999 99999999999999999 9999999663 5899999999999999999999999999 9999999987
Q ss_pred cC
Q 006992 449 EK 450 (622)
Q Consensus 449 ~K 450 (622)
++
T Consensus 196 ~~ 197 (198)
T 1qm9_A 196 ST 197 (198)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 196
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.32 E-value=3.8e-12 Score=127.03 Aligned_cols=81 Identities=9% Similarity=0.162 Sum_probs=75.0
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D----ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
+..++|||+|| ++.+|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|.+|++.|++..|+|+.|.|.+
T Consensus 93 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 93 PTDALLCVANL-PPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCSCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEcCC-CCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45689999999 999999999999999999999999876 4789999999999999999999999999999999999
Q ss_pred CccCCC
Q 006992 447 YKEKGK 452 (622)
Q Consensus 447 Ak~K~k 452 (622)
+.++..
T Consensus 172 a~~~~~ 177 (284)
T 3smz_A 172 TDAGQL 177 (284)
T ss_dssp CCGGGC
T ss_pred CCCCCC
Confidence 987653
No 197
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.31 E-value=3e-12 Score=125.17 Aligned_cols=78 Identities=21% Similarity=0.202 Sum_probs=72.5
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccC-CceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEc-CeEEEEEeCc
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYG-PVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVC-DARVLVKPYK 448 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG-~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~-GR~I~Vk~Ak 448 (622)
...++|||+|| +..+|+++|+++|++|| +|.+|+|+. ++||||||+|.+.++|.+|++.|++..|. |+.|.|.+++
T Consensus 149 ~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~~i~~v~i~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 149 PPSATLHLSNI-PPSVSEEDLKVLFSSNGGVVKGFKFFQ-KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp CSCSEEEEECC-CTTCCHHHHHHHHHTTSCCEEEEEECS-SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CCCCEEEEeCC-CccCCHHHHHHHHHHcCCCeeEEEEEE-CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 45799999999 99999999999999999 999999955 26899999999999999999999999999 9999999998
Q ss_pred cC
Q 006992 449 EK 450 (622)
Q Consensus 449 ~K 450 (622)
++
T Consensus 227 ~~ 228 (229)
T 2adc_A 227 ST 228 (229)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 198
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.30 E-value=6.5e-13 Score=116.78 Aligned_cols=70 Identities=11% Similarity=0.101 Sum_probs=60.4
Q ss_pred EEcCCCCCCCCHHHHHHHh------------hccCCceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeE
Q 006992 377 YLTFPADSTFREEDVSNYF------------SIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDAR 441 (622)
Q Consensus 377 YVGnL~~~~~TEedLre~F------------sqFG~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~ 441 (622)
++.+| ++.+++++|+++| ++||+|.+|+|+.+ ++||||||+|.++++|++|+..|||..++||.
T Consensus 19 ~~~~l-~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 19 SADGL-RSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp --CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred ccCCc-ccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 35566 6667777776666 99999999999986 57999999999999999999999999999999
Q ss_pred EEEEeC
Q 006992 442 VLVKPY 447 (622)
Q Consensus 442 I~Vk~A 447 (622)
|.|.++
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999875
No 199
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.29 E-value=4.7e-12 Score=126.84 Aligned_cols=81 Identities=12% Similarity=0.201 Sum_probs=71.4
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhccC-CceeEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeC
Q 006992 372 ASRQIYLTFPADSTFREEDVSNYFSIYG-PVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (622)
Q Consensus 372 ~~rtIYVGnL~~~~~TEedLre~FsqFG-~V~dVrI~~D---ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~A 447 (622)
..++|||+|| ++.+|+++|+++|++|| +|.+|+|+.+ +++|||||+|.+.++|++|++.|++..|.|+.|.|.++
T Consensus 116 ~~~~l~v~nl-p~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNF-PPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECC-CTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECC-CCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4789999999 99999999999999999 9999999886 48999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 006992 448 KEKGKV 453 (622)
Q Consensus 448 k~K~k~ 453 (622)
.++...
T Consensus 195 ~~~~~~ 200 (292)
T 2ghp_A 195 NPLEKS 200 (292)
T ss_dssp CCC---
T ss_pred CCCccc
Confidence 876543
No 200
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.27 E-value=3.9e-12 Score=123.88 Aligned_cols=76 Identities=12% Similarity=0.016 Sum_probs=68.3
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCc--eeEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCe----EE
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPV--QDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDA----RV 442 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V--~dVrI~~D--ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR----~I 442 (622)
+..++|||+|| ++++|+++|+++|++||.| .+|+|+.+ +++|||||+|.+.++|.+|+..||+..|.|+ ++
T Consensus 121 ~p~~~l~v~NL-p~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 121 HPSNVLHFFNA-PLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCCSEEEEEEE-CTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CCcceEEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 34679999999 9999999999999999999 89999886 4579999999999999999999999999988 46
Q ss_pred EEEeC
Q 006992 443 LVKPY 447 (622)
Q Consensus 443 ~Vk~A 447 (622)
.|+++
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 66654
No 201
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.25 E-value=1.1e-11 Score=109.11 Aligned_cols=79 Identities=19% Similarity=0.114 Sum_probs=67.7
Q ss_pred CCCceEEEcCCCCC-CC--------CHHHHHHHhhccCCceeEEeecc------CCCceEEEEECCHHHHHHHHHhCCCc
Q 006992 371 PASRQIYLTFPADS-TF--------REEDVSNYFSIYGPVQDVRIPYQ------QKRMFGFVTFVYPETVKIILAKGNPH 435 (622)
Q Consensus 371 ~~~rtIYVGnL~~~-~~--------TEedLre~FsqFG~V~dVrI~~D------ksRGFGFVtF~~~e~A~~Al~~mng~ 435 (622)
..++.|.|.|+-+. .+ .+++|++.|++||+|.+|+|+.+ +++|||||+|.+.++|++|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 34788899987221 22 24799999999999999999986 36899999999999999999999999
Q ss_pred eEcCeEEEEEeCcc
Q 006992 436 FVCDARVLVKPYKE 449 (622)
Q Consensus 436 ~I~GR~I~Vk~Ak~ 449 (622)
.++||.|.|.++.+
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998754
No 202
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.24 E-value=1.6e-11 Score=110.32 Aligned_cols=78 Identities=9% Similarity=-0.020 Sum_probs=67.5
Q ss_pred CCCceEEEcCCCCCCC---------CHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeE
Q 006992 371 PASRQIYLTFPADSTF---------REEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDAR 441 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~---------TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~ 441 (622)
..++.|.+.|+-...- .+++|++.|++||+|.+|.|+.+..||||||+|.+.++|++|+..|||..++||.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3467788888723211 1468999999999999999998878999999999999999999999999999999
Q ss_pred EEEEeCc
Q 006992 442 VLVKPYK 448 (622)
Q Consensus 442 I~Vk~Ak 448 (622)
|.|.++.
T Consensus 85 i~v~~~~ 91 (114)
T 3s6e_A 85 ITAAYVP 91 (114)
T ss_dssp CEEEEEC
T ss_pred EEEEEEc
Confidence 9999985
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.24 E-value=1.4e-11 Score=130.09 Aligned_cols=76 Identities=12% Similarity=0.143 Sum_probs=67.6
Q ss_pred CCCCceEEEcC--CCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEc---Ce--EE
Q 006992 370 NPASRQIYLTF--PADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVC---DA--RV 442 (622)
Q Consensus 370 ~~~~rtIYVGn--L~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~---GR--~I 442 (622)
...+++||||| | ++.+||++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.|||..+. |+ .+
T Consensus 15 ~~ps~~l~VgN~gl-~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~l 91 (345)
T 3tht_A 15 SYATQSLVVANGGL-GNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 91 (345)
T ss_dssp SSCCSEEEEETCSG-GGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCCCEEEEEcCCC-CCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEE
Confidence 46688999998 5 68999999999999999999999887 8999999999999999999999999983 45 57
Q ss_pred EEEeCc
Q 006992 443 LVKPYK 448 (622)
Q Consensus 443 ~Vk~Ak 448 (622)
+|.++.
T Consensus 92 y~~~~~ 97 (345)
T 3tht_A 92 YLNFVE 97 (345)
T ss_dssp EEEECS
T ss_pred EEEEee
Confidence 777764
No 204
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.21 E-value=1.6e-11 Score=110.85 Aligned_cols=78 Identities=19% Similarity=0.210 Sum_probs=67.5
Q ss_pred CCceEEEcCCCCC----CCCHHHHHHHhhccCCceeEEeeccC--------CCceEEEEECCHHHHHHHHHhCCCceEcC
Q 006992 372 ASRQIYLTFPADS----TFREEDVSNYFSIYGPVQDVRIPYQQ--------KRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (622)
Q Consensus 372 ~~rtIYVGnL~~~----~~TEedLre~FsqFG~V~dVrI~~Dk--------sRGFGFVtF~~~e~A~~Al~~mng~~I~G 439 (622)
.++.|+|.|+-.. +-.+++|++.|++||+|.+|+|+.++ +|||+||+|.+.++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4788999998221 12379999999999999999999862 46999999999999999999999999999
Q ss_pred eEEEEEeCcc
Q 006992 440 ARVLVKPYKE 449 (622)
Q Consensus 440 R~I~Vk~Ak~ 449 (622)
|.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998753
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.87 E-value=5.5e-09 Score=91.00 Aligned_cols=75 Identities=13% Similarity=0.257 Sum_probs=62.2
Q ss_pred CCCceEEEcCCCC---CC-CCH---HHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 006992 371 PASRQIYLTFPAD---ST-FRE---EDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (622)
Q Consensus 371 ~~~rtIYVGnL~~---~~-~TE---edLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~ 443 (622)
+..-||+|.-..+ .. +.+ .+|.+.|++||+|..|||+.|+ +||+|.+.++|.+|++ ||+..|+||.|+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~Gr~Lk 79 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELLNRTIT 79 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEETTEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeCCeEEE
Confidence 4556788877621 12 332 6799999999999999999954 8999999999999998 999999999999
Q ss_pred EEeCccC
Q 006992 444 VKPYKEK 450 (622)
Q Consensus 444 Vk~Ak~K 450 (622)
|..+++.
T Consensus 80 V~lkt~d 86 (91)
T 2dnr_A 80 IALKSPS 86 (91)
T ss_dssp EEECCCS
T ss_pred EEeCCCC
Confidence 9998764
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=5.1e-08 Score=88.89 Aligned_cols=75 Identities=11% Similarity=-0.010 Sum_probs=66.2
Q ss_pred CCCceEEEcCCCCCC-CCHHHHHHHhhccCCceeEEeeccCCCceEEEEECC-HHHHHHHHHhC--CCceEcCeEEEEEe
Q 006992 371 PASRQIYLTFPADST-FREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVY-PETVKIILAKG--NPHFVCDARVLVKP 446 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~-~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~-~e~A~~Al~~m--ng~~I~GR~I~Vk~ 446 (622)
+...-|||+|| ++. +++++|+++|++||+|..|.++.| +-.|||.|.+ +++|+.|+.++ ++..|+|..+.+..
T Consensus 16 ~~G~il~v~~l-~~~~~sredLke~F~~~G~V~~Vd~~~g--~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 16 KIGCLLKFSGD-LDDQTCREDLHILFSNHGEIKWIDFVRG--AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCEEEEEES-CCSSCCHHHHHHHTCSSCCEEEEECCTT--CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cCCeEEEEecC-CCCcCCHHHHHHHHHhcCCEEEEEEecC--CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 45678999999 888 999999999999999999999985 4479999999 89999999998 48889998888876
Q ss_pred Cc
Q 006992 447 YK 448 (622)
Q Consensus 447 Ak 448 (622)
..
T Consensus 93 L~ 94 (121)
T 1owx_A 93 LE 94 (121)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.62 E-value=2.8e-08 Score=96.56 Aligned_cols=64 Identities=19% Similarity=0.228 Sum_probs=58.6
Q ss_pred CCHHHHHHHhhccCCceeEEeecc--------CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCcc
Q 006992 386 FREEDVSNYFSIYGPVQDVRIPYQ--------QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (622)
Q Consensus 386 ~TEedLre~FsqFG~V~dVrI~~D--------ksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak~ 449 (622)
-.+++|++.|++||+|.+|.|+.+ ++|||+||+|.+.++|++|+..|||..++||.|.|.++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 457899999999999999999853 6889999999999999999999999999999999998753
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.61 E-value=7.8e-08 Score=84.31 Aligned_cols=74 Identities=22% Similarity=0.255 Sum_probs=62.6
Q ss_pred CCCCCceEEEcCCCCCC------CCH---HHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcC
Q 006992 369 VNPASRQIYLTFPADST------FRE---EDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (622)
Q Consensus 369 ~~~~~rtIYVGnL~~~~------~TE---edLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~G 439 (622)
..+..-||+|.-+ +.. +.+ .+|.+.|++||+|..|||+.|+ +||+|.+.++|.+|++ ||+..|+|
T Consensus 11 ~GPpD~Tv~V~~~-~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 11 QGPLDATVVVNLQ-SPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp CCCTTCEEEEEES-SCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred cCCCCCeEEEEec-CCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 3456778999887 432 332 5689999999999999999965 9999999999999999 99999999
Q ss_pred eEEEEEeCc
Q 006992 440 ARVLVKPYK 448 (622)
Q Consensus 440 R~I~Vk~Ak 448 (622)
|.|+|+.-.
T Consensus 85 r~L~V~~k~ 93 (95)
T 1ufw_A 85 RAVKISGPS 93 (95)
T ss_dssp EEEEEECCC
T ss_pred eEEEEeccC
Confidence 999998643
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.00041 Score=62.57 Aligned_cols=72 Identities=7% Similarity=-0.051 Sum_probs=66.6
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhcc-----CCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 372 ASRQIYLTFPADSTFREEDVSNYFSIY-----GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 372 ~~rtIYVGnL~~~~~TEedLre~FsqF-----G~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
..++|-+-+| +.+++...|+.+..+| |.|++|.+.. ..|=|+|+|.+..+|-+|.=.++|.+|.||+|+|.-
T Consensus 20 ~~rtiaL~~i-pDtvndarIr~lve~~~~i~~g~i~KI~L~p--DH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPL-SDKVSPSLICQFLQEEIHINEKDIRKILLVS--DFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECC-CTTCCHHHHHHHHHHHTCCCTTTCSEEEEET--TTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecC-CCCCCHHHHHHHHhhhhccCccceeEEEEec--CCCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 4789999999 8899999999999999 9999999988 457799999999999999988899999999999974
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.34 E-value=0.001 Score=59.12 Aligned_cols=77 Identities=19% Similarity=0.227 Sum_probs=67.1
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhc-----cCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEE
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSI-----YGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~Fsq-----FG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk 445 (622)
...++|.|.+| +..+.++.|+-||+. =|+|++|+... +=|+|+|.+++.|+++|+. ..|.|+|.+|.|.
T Consensus 6 ~~~~~I~V~~l-Pp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 6 SGGVAVEVRGL-PPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ-ADHELHGAQLSLR 79 (104)
T ss_dssp CCCCEEEEESC-CTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEE
T ss_pred cCccEEEEECC-CCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC-CcceecCeEEEEE
Confidence 45789999999 889999999999997 37999987643 6799999999999999998 7899999999999
Q ss_pred eCccCCCC
Q 006992 446 PYKEKGKV 453 (622)
Q Consensus 446 ~Ak~K~k~ 453 (622)
++-++...
T Consensus 80 P~~~~~~~ 87 (104)
T 2dhx_A 80 PAPPRAPA 87 (104)
T ss_dssp ECCCCCCC
T ss_pred cCCCCCcc
Confidence 98776653
No 211
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=96.48 E-value=0.0016 Score=57.13 Aligned_cols=22 Identities=41% Similarity=0.937 Sum_probs=11.7
Q ss_pred ccccccc-cccccCCCCCCccCC
Q 006992 231 WRPCLYF-ARGYCKNGSSCRFVH 252 (622)
Q Consensus 231 ~kpC~YF-akG~CK~G~sCry~H 252 (622)
..+|.|| .+|.|++|..|+|.|
T Consensus 36 ~~~C~~f~~~G~C~~G~~C~f~H 58 (98)
T 2cqe_A 36 DFPCKLYHTTGNCINGDDCMFSH 58 (98)
T ss_dssp SSBCSHHHHTSCCSSCTTCSSBC
T ss_pred CCcCcCcccCCcCCCCCCCcccC
Confidence 3455555 355555555555555
No 212
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.35 E-value=0.0078 Score=53.54 Aligned_cols=75 Identities=9% Similarity=0.014 Sum_probs=62.9
Q ss_pred CCceEEEcCCCCCC-CCH----HHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEe
Q 006992 372 ASRQIYLTFPADST-FRE----EDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (622)
Q Consensus 372 ~~rtIYVGnL~~~~-~TE----edLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~ 446 (622)
..++|+|++| +.+ ++. +.++.+|.+|+++......+ +-.=--|.|.++++|.+|-..|++..+.|++++|..
T Consensus 4 ~pntLiitnl-~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk--SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YF 80 (104)
T 1wey_A 4 GSSGLIACVA-NDDVFSESETRAKFESLFRTYDKDTTFQYFK--SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYF 80 (104)
T ss_dssp CCCEEEEECC-CGGGGSTTTHHHHHHHHHHTTCSSCEEEEET--TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEEC
T ss_pred CCceEEEecC-CHHHcCCHHHHHHHHHHHHhhCcCcceeecC--cceEEEEEeCChHHHHHHHHHhccceecCceeEEEe
Confidence 4678999999 543 343 56789999999999877666 444578999999999999999999999999999999
Q ss_pred Ccc
Q 006992 447 YKE 449 (622)
Q Consensus 447 Ak~ 449 (622)
+++
T Consensus 81 gq~ 83 (104)
T 1wey_A 81 AQT 83 (104)
T ss_dssp CCC
T ss_pred cCC
Confidence 884
No 213
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.34 E-value=0.0016 Score=53.95 Aligned_cols=24 Identities=38% Similarity=0.934 Sum_probs=22.3
Q ss_pred CccccccccccccCCCCCCccCCC
Q 006992 230 GWRPCLYFARGYCKNGSSCRFVHG 253 (622)
Q Consensus 230 ~~kpC~YFakG~CK~G~sCry~Hg 253 (622)
-++.|.+|.+|.|+.|+.|.|.||
T Consensus 19 k~~LC~~~~~G~C~~G~~C~FAHG 42 (69)
T 2d9m_A 19 YFSICDRYMNGTCPEGNSCKFAHG 42 (69)
T ss_dssp CCSBCHHHHHSCCSSCSSCSSBSS
T ss_pred CcccCcccCcCCCCCCCccCCcCC
Confidence 348999999999999999999996
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.12 E-value=0.015 Score=52.80 Aligned_cols=72 Identities=11% Similarity=0.090 Sum_probs=58.8
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcC-eEEEEEeCc
Q 006992 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCD-ARVLVKPYK 448 (622)
Q Consensus 372 ~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~G-R~I~Vk~Ak 448 (622)
..+.|-|-+. +.. .-..|-++|++||+|.+..... ...+-.|+|.++.+|++||.+ |+..|+| -.|-|++..
T Consensus 23 ~~~wVtVFGF-p~~-~~~~VL~~F~~~G~Iv~~~~~~--~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGF-PQA-SASYILLQFAQYGNILKHVMSN--TGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECC-CGG-GHHHHHHHHHTTSCEEEEEECS--SSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECC
T ss_pred CCCEEEEECC-CHH-HHHHHHHHHHhhCcEEEeccCC--CCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECC
Confidence 3566777777 433 4667889999999999988744 678999999999999999999 9999985 677787764
No 215
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=96.10 E-value=0.0013 Score=54.48 Aligned_cols=25 Identities=36% Similarity=0.779 Sum_probs=22.4
Q ss_pred CCccccccccccccCCCCCCccCCC
Q 006992 229 LGWRPCLYFARGYCKNGSSCRFVHG 253 (622)
Q Consensus 229 ~~~kpC~YFakG~CK~G~sCry~Hg 253 (622)
....+|.||.+|.|++|.+|+|.|.
T Consensus 14 ~k~~vCk~fl~G~C~~G~~C~fsH~ 38 (72)
T 2rhk_C 14 EKTVVCKHWLRGLCKKGDQCEFLHE 38 (72)
T ss_dssp CCCSBCHHHHTTCCCCGGGSSSBCS
T ss_pred CcCeeCHHHhcCCCCCCCCCCCccc
Confidence 3567999999999999999999994
No 216
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.01 E-value=0.0017 Score=54.32 Aligned_cols=24 Identities=38% Similarity=0.850 Sum_probs=21.8
Q ss_pred CccccccccccccCCCCCCccCCC
Q 006992 230 GWRPCLYFARGYCKNGSSCRFVHG 253 (622)
Q Consensus 230 ~~kpC~YFakG~CK~G~sCry~Hg 253 (622)
--.+|.||.+|.|++|.+|+|.|.
T Consensus 9 k~~~C~~fl~G~C~~G~~C~fsH~ 32 (77)
T 2d9n_A 9 KTVVCKHWLRGLCKKGDQCEFLHE 32 (77)
T ss_dssp TTSBCHHHHTTCCSCTTSSSSBCS
T ss_pred cceeCHhHccCcCCCCCCCCCccc
Confidence 346899999999999999999994
No 217
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=95.72 E-value=0.0056 Score=50.42 Aligned_cols=26 Identities=31% Similarity=0.820 Sum_probs=22.6
Q ss_pred CCCcccccccc-ccccCCCCCCccCCC
Q 006992 228 GLGWRPCLYFA-RGYCKNGSSCRFVHG 253 (622)
Q Consensus 228 ~~~~kpC~YFa-kG~CK~G~sCry~Hg 253 (622)
...-++|.||. .|.|+.|.+|+|.|+
T Consensus 9 ~~kt~~C~~f~~~G~C~~G~~C~f~H~ 35 (77)
T 1m9o_A 9 RYKTELCRTYSESGRCRYGAKCQFAHG 35 (77)
T ss_dssp CCCSCCCSGGGGTSCCTTTTTCSSCSS
T ss_pred CccchhCHHhhhCCCcCCCCCccCCCC
Confidence 45668999995 899999999999995
No 218
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=95.68 E-value=0.0028 Score=52.12 Aligned_cols=22 Identities=41% Similarity=1.029 Sum_probs=20.2
Q ss_pred cccccccccccCCCCC-CccCCC
Q 006992 232 RPCLYFARGYCKNGSS-CRFVHG 253 (622)
Q Consensus 232 kpC~YFakG~CK~G~s-Cry~Hg 253 (622)
.+|.+|.+|.|++|.+ |+|.|.
T Consensus 7 ~vC~~f~~G~C~rg~~~C~f~H~ 29 (70)
T 3d2q_A 7 EVCREYQRGNCNRGENDCRFAHP 29 (70)
T ss_dssp EBCHHHHTTCCSSCTTTCSSBCC
T ss_pred hhCHHHhcCCCCCCCCCCCCccC
Confidence 4899999999999995 999994
No 219
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=95.66 E-value=0.007 Score=49.03 Aligned_cols=51 Identities=24% Similarity=0.430 Sum_probs=39.8
Q ss_pred HHHHHhhhccCCCchhhhHhhhhcccCChhHHHHHhcCchHHHHHHHHHHHHHh
Q 006992 8 RIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKEL 61 (622)
Q Consensus 8 ~~v~~riq~l~pe~askI~g~ll~qd~~e~emirlA~gpd~ll~~~i~kak~~L 61 (622)
..+|.+|++++|++|.||.|+|| +.+..|++.|=-.||+ |++-|..|-.-|
T Consensus 7 e~Lyp~V~~~~p~~A~KITGMLL--E~d~~ell~ll~~~e~-L~~kv~EA~~vl 57 (61)
T 1i2t_A 7 ERLYPRVQAMQPAFASKITGMLL--ELSPAQLLLLLASEDS-LRARVDEAMELI 57 (61)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHT--TSCHHHHHHHHHCHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccchhhhhc--cCCHHHHHHHHcCHHH-HHHHHHHHHHHH
Confidence 35899999999999999999998 4666778888766665 566666665544
No 220
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=95.17 E-value=0.0053 Score=53.78 Aligned_cols=24 Identities=21% Similarity=0.832 Sum_probs=21.8
Q ss_pred CCccccccccccccCCCCCCccCC
Q 006992 229 LGWRPCLYFARGYCKNGSSCRFVH 252 (622)
Q Consensus 229 ~~~kpC~YFakG~CK~G~sCry~H 252 (622)
-.-.+|.||.+|.|++|.+|+|.|
T Consensus 11 ~k~~lC~~f~~G~C~~G~~C~f~H 34 (98)
T 2cqe_A 11 KKRELCKFYITGFCARAENCPYMH 34 (98)
T ss_dssp CCCSBCTTTTTTCCSCSTTCSSBS
T ss_pred CCCccCcccccCcCCCCCCCCCCC
Confidence 345689999999999999999999
No 221
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=95.08 E-value=0.0073 Score=51.53 Aligned_cols=23 Identities=35% Similarity=0.832 Sum_probs=20.6
Q ss_pred ccccccccccccCCCC-CCccCCC
Q 006992 231 WRPCLYFARGYCKNGS-SCRFVHG 253 (622)
Q Consensus 231 ~kpC~YFakG~CK~G~-sCry~Hg 253 (622)
.-+|.+|.+|.|++|. .|+|.|.
T Consensus 9 ~~VCr~FlrG~C~r~d~~C~f~H~ 32 (83)
T 3d2n_A 9 LEVCREFQRGTCSRPDTECKFAHP 32 (83)
T ss_dssp EEBCTTGGGTCCCSCTTTCSSBCC
T ss_pred chhcHHHhcCCCCCCCCCCCCcCC
Confidence 3589999999999995 9999994
No 222
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.08 E-value=0.029 Score=51.88 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=53.7
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhccCCcee-EEeecc-----------------CCCceEEEEECCHHHHHHHHHhCCCce
Q 006992 375 QIYLTFPADSTFREEDVSNYFSIYGPVQD-VRIPYQ-----------------QKRMFGFVTFVYPETVKIILAKGNPHF 436 (622)
Q Consensus 375 tIYVGnL~~~~~TEedLre~FsqFG~V~d-VrI~~D-----------------ksRGFGFVtF~~~e~A~~Al~~mng~~ 436 (622)
-|-|-+. + ......+-++|++||.|.+ +.+..+ ....+-.|+|+++.+|.+||.+ ||..
T Consensus 9 ~VtVFGF-p-~~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~i 85 (132)
T 3p3d_A 9 AILVFGY-P-ETMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAV 85 (132)
T ss_dssp EEEEECC-C-GGGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCE
T ss_pred EEEEEec-C-HHHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeE
Confidence 3445455 3 3456667899999999987 322210 1356779999999999999999 9999
Q ss_pred EcCeEEEEEeCc
Q 006992 437 VCDARVLVKPYK 448 (622)
Q Consensus 437 I~GR~I~Vk~Ak 448 (622)
|+|..|-|+++.
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999999999884
No 223
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=95.01 E-value=0.0058 Score=50.18 Aligned_cols=23 Identities=22% Similarity=0.762 Sum_probs=20.9
Q ss_pred CccccccccccccCCCCCCccCCC
Q 006992 230 GWRPCLYFARGYCKNGSSCRFVHG 253 (622)
Q Consensus 230 ~~kpC~YFakG~CK~G~sCry~Hg 253 (622)
....|.+|.||.|.+| +|+|+|.
T Consensus 41 ~~~vC~~flkG~C~r~-~C~y~H~ 63 (70)
T 3d2q_A 41 TVTVCMDYIKGRCSRE-KCKYFHP 63 (70)
T ss_dssp EEEBCHHHHTTCCCCT-TCCSBCC
T ss_pred cceeccccCcCCCCCC-CcCeeCC
Confidence 4678999999999999 9999994
No 224
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=94.97 E-value=0.0042 Score=51.13 Aligned_cols=23 Identities=35% Similarity=0.837 Sum_probs=0.0
Q ss_pred ccccc-cccccccCCCCCCccCCC
Q 006992 231 WRPCL-YFARGYCKNGSSCRFVHG 253 (622)
Q Consensus 231 ~kpC~-YFakG~CK~G~sCry~Hg 253 (622)
-++|. |+..|+|++|..|+|.|+
T Consensus 50 ~~~C~~f~~~G~C~~G~~C~f~H~ 73 (77)
T 1m9o_A 50 TELCHKFKLQGRCPYGSRCHFIHN 73 (77)
T ss_dssp ------------------------
T ss_pred CCcccchhhCcCCCCcCcCCCCCC
Confidence 47897 566999999999999995
No 225
>2dyd_A Poly(A)-binding protein; alpha helical protein, RNA binding protein; NMR {Triticum aestivum}
Probab=94.72 E-value=0.012 Score=50.54 Aligned_cols=51 Identities=24% Similarity=0.460 Sum_probs=40.0
Q ss_pred HHHHHhhhccCCCchhhhHhhhhcccCChhHHHHHhcCchHHHHHHHHHHHHHh
Q 006992 8 RIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKEL 61 (622)
Q Consensus 8 ~~v~~riq~l~pe~askI~g~ll~qd~~e~emirlA~gpd~ll~~~i~kak~~L 61 (622)
.-+|.+|++++||+|.||.|+||= .+..|++.|=-.||+ |++-|..|-.-|
T Consensus 28 E~LyplV~~~~p~~AgKITGMLLE--md~~Ell~Lles~e~-L~~kv~EA~~vL 78 (85)
T 2dyd_A 28 ENLYPLVDQLEHDQAAKVTGMLLE--MDQTEVLHLLESPDA-LKAKVAEAMEVL 78 (85)
T ss_dssp HHHHHHHCCSCHHHHHHHHHHHHH--HCHHHHHHHTTCSHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccccchhhhhhhc--CCHHHHHHHHcCHHH-HHHHHHHHHHHH
Confidence 358999999999999999999985 556778888766665 566666666555
No 226
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.34 E-value=0.0093 Score=52.32 Aligned_cols=24 Identities=21% Similarity=0.668 Sum_probs=21.6
Q ss_pred CCccccccccccccCCCCCCccCCC
Q 006992 229 LGWRPCLYFARGYCKNGSSCRFVHG 253 (622)
Q Consensus 229 ~~~kpC~YFakG~CK~G~sCry~Hg 253 (622)
.....|.||.||.|.+| +|+|.|.
T Consensus 54 ~~~~vC~~flkG~C~r~-~C~y~H~ 77 (98)
T 2e5s_A 54 NTVTVCMDYIKGRCMRE-KCKYFHP 77 (98)
T ss_dssp CEEEBCHHHHHTCCCCT-TCCSBCC
T ss_pred CccccchhhccCCCCCC-CcCccCC
Confidence 45679999999999999 9999993
No 227
>1ifw_A Polyadenylate-binding protein, cytoplasmic and nuclear; all-helical domain, RNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.144.1.1
Probab=94.31 E-value=0.024 Score=49.44 Aligned_cols=53 Identities=23% Similarity=0.317 Sum_probs=41.8
Q ss_pred HHHHHhhhc--cCCCchhhhHhhhhcccCChhHHHHHhcCchHHHHHHHHHHHHHhhh
Q 006992 8 RIVFSRIQN--LDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKELVR 63 (622)
Q Consensus 8 ~~v~~riq~--l~pe~askI~g~ll~qd~~e~emirlA~gpd~ll~~~i~kak~~L~~ 63 (622)
.-+|.+|++ ++||+|.||.|+|| +.+..|++.|=-.|| +|++-|..|-.-|.-
T Consensus 26 E~LyplV~~~~~~pelAgKITGMLL--Emd~~ElL~LLes~e-~L~~kV~EA~~vL~~ 80 (92)
T 1ifw_A 26 EQLYKKVSAKTSNEEAAGKITGMIL--DLPPQEVFPLLESDE-LFEQHYKEASAAYES 80 (92)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHT--TSCHHHHHHHHTCHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCccccchhhHhHh--cCCHHHHHHHHcCHH-HHHHHHHHHHHHHHH
Confidence 357999999 99999999999998 577778888866555 567777777666643
No 228
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=94.14 E-value=0.012 Score=50.99 Aligned_cols=23 Identities=35% Similarity=0.875 Sum_probs=20.9
Q ss_pred ccccccccccccCCCC-CCccCCC
Q 006992 231 WRPCLYFARGYCKNGS-SCRFVHG 253 (622)
Q Consensus 231 ~kpC~YFakG~CK~G~-sCry~Hg 253 (622)
.-+|.+|.+|.|++|. .|+|.|-
T Consensus 17 ~~VCrdFlrG~C~r~d~~CrfsH~ 40 (89)
T 2rpp_A 17 LEVCRQFQRGTCSRSDEECKFAHP 40 (89)
T ss_dssp ECBCHHHHHTCCCCCTTTSSSBCC
T ss_pred hhhchHHhcCCCCCCCCCCCCcCC
Confidence 4489999999999998 9999994
No 229
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.95 E-value=0.026 Score=61.79 Aligned_cols=56 Identities=16% Similarity=0.339 Sum_probs=41.8
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHh
Q 006992 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAK 431 (622)
Q Consensus 373 ~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~ 431 (622)
.|.|||.. +..+++.+|.+||++||+|.++.+-.+ ..-|+.|+|.+.++++.++..
T Consensus 53 ~rsv~v~~--~~~~~~~~l~~y~~~~g~i~~~~~~~~-~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIHC--PEKISENKFLKYLSQFGPINNHFFYES-FGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEEE--CCC---CHHHHHHGGGSCCCCEEEECS-SSEEEEEECC---CCHHHHSS
T ss_pred cceEEEEc--CCCCCHHHHHHHHHhcCCcceEEEEcc-CCeEEEEEeCCHHHHHHHHhc
Confidence 57899985 578999999999999999999876553 335999999999999988766
No 230
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.95 E-value=0.0062 Score=53.44 Aligned_cols=23 Identities=43% Similarity=0.979 Sum_probs=21.0
Q ss_pred ccccccccccccCCCC-CCccCCC
Q 006992 231 WRPCLYFARGYCKNGS-SCRFVHG 253 (622)
Q Consensus 231 ~kpC~YFakG~CK~G~-sCry~Hg 253 (622)
..+|.||.+|.|++|. .|+|.|.
T Consensus 20 ~~VCr~FlrG~C~rgd~~C~FsH~ 43 (98)
T 2e5s_A 20 LEVCREFQRGNCARGETDCRFAHP 43 (98)
T ss_dssp EEBCSHHHHTCCSSHHHHCSSBCC
T ss_pred hhhhHHHhcCcCCCCCCCCCCcCC
Confidence 4589999999999999 7999994
No 231
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=93.90 E-value=0.026 Score=51.23 Aligned_cols=33 Identities=6% Similarity=-0.049 Sum_probs=27.4
Q ss_pred eEEeecc--CCCceEEEEECCHHHHHHHHHhCCCc
Q 006992 403 DVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPH 435 (622)
Q Consensus 403 dVrI~~D--ksRGFGFVtF~~~e~A~~Al~~mng~ 435 (622)
.++|+.+ +++|||||+|.++++|++|++.+++.
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhccc
Confidence 4566665 68999999999999999999887643
No 232
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=93.82 E-value=0.016 Score=49.88 Aligned_cols=51 Identities=25% Similarity=0.447 Sum_probs=39.6
Q ss_pred HHHHHhhhccCCCchhhhHhhhhcccCChhHHHHHhcCchHHHHHHHHHHHHHh
Q 006992 8 RIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKEL 61 (622)
Q Consensus 8 ~~v~~riq~l~pe~askI~g~ll~qd~~e~emirlA~gpd~ll~~~i~kak~~L 61 (622)
.-+|.+|++++||.|.||.|+||= .+..|++.|=-.|| +|++.|..|-.-|
T Consensus 29 E~LyplV~~~~p~~AgKITGMLLE--md~~ElL~Lle~~e-~L~~kV~EA~~vL 79 (85)
T 1nmr_A 29 ERLYNHIVAINPAAAAKVTGMLLE--MDNGEILNLLDTPG-LLDAKVQEALEVL 79 (85)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHCSC--THHHHHHTTCCTHH-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCccccchhhHhHhc--CCHHHHHHHHcCHH-HHHHHHHHHHHHH
Confidence 357999999999999999999984 56667887755554 5677777776555
No 233
>3kuj_A Polyadenylate-binding protein 1; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding, spliceosome; 1.40A {Homo sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A 3pkn_A 2rqg_B 2rqh_B 3kur_A 3pth_A 2x04_A
Probab=93.64 E-value=0.053 Score=46.89 Aligned_cols=52 Identities=29% Similarity=0.374 Sum_probs=40.4
Q ss_pred HHHHhhhccCCCchhhhHhhhhcccCChhHHHHHhcCchHHHHHHHHHHHHHhhh
Q 006992 9 IVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKELVR 63 (622)
Q Consensus 9 ~v~~riq~l~pe~askI~g~ll~qd~~e~emirlA~gpd~ll~~~i~kak~~L~~ 63 (622)
-+|.+|++++|+.|.||.|+||= .+..|++.|==.| ..|++-|..|-.-|..
T Consensus 27 ~Lyp~V~~~~p~~A~KITGMLLE--md~~Ell~lle~~-e~L~~kV~EA~~vL~~ 78 (88)
T 3kuj_A 27 RLFPLIQAMHPTLAGKITGMLLE--IDNSELLHMLESP-ESLRSKVDEAVAVLQA 78 (88)
T ss_dssp HHHHHHHHHCTTTHHHHHHHHTT--SCHHHHHHHHHCH-HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhhCCCccchhhhHhhc--CCHHHHHHHHcCH-HHHHHHHHHHHHHHHH
Confidence 58999999999999999999985 5566788776555 4567777777666543
No 234
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=93.18 E-value=0.022 Score=48.54 Aligned_cols=23 Identities=22% Similarity=0.667 Sum_probs=21.0
Q ss_pred CccccccccccccCCCCCCccCCC
Q 006992 230 GWRPCLYFARGYCKNGSSCRFVHG 253 (622)
Q Consensus 230 ~~kpC~YFakG~CK~G~sCry~Hg 253 (622)
.+-.|.+|.||.|.+| +|+|+|.
T Consensus 42 ~~~vC~dflkG~C~r~-~C~y~H~ 64 (83)
T 3d2n_A 42 RVIACFDSLKGRCSRE-NCKYLHP 64 (83)
T ss_dssp EEECCHHHHTTCCCCS-SCSSCCC
T ss_pred ceeehhHhhhccccCC-CcceeCC
Confidence 4778999999999999 8999994
No 235
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.01 E-value=0.022 Score=47.46 Aligned_cols=23 Identities=26% Similarity=0.873 Sum_probs=20.5
Q ss_pred ccccccccc-cccCCCCCCccCCCC
Q 006992 231 WRPCLYFAR-GYCKNGSSCRFVHGG 254 (622)
Q Consensus 231 ~kpC~YFak-G~CK~G~sCry~Hg~ 254 (622)
..+|.||.+ |.|. |..|+|.|..
T Consensus 38 ~~~C~~f~~~G~C~-~~~C~f~H~~ 61 (77)
T 2d9n_A 38 MPECYFYSKFGECS-NKECPFLHID 61 (77)
T ss_dssp SCBCHHHHHTCCCC-CSSCSSBCCC
T ss_pred CCCCcccCCCCccC-CCCeeccCCC
Confidence 458999999 9999 8999999953
No 236
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=92.84 E-value=0.027 Score=46.60 Aligned_cols=24 Identities=29% Similarity=0.879 Sum_probs=21.1
Q ss_pred Cccccccccc-cccCCCCCCccCCCC
Q 006992 230 GWRPCLYFAR-GYCKNGSSCRFVHGG 254 (622)
Q Consensus 230 ~~kpC~YFak-G~CK~G~sCry~Hg~ 254 (622)
...+|.||.+ |.|.+ ..|+|.|..
T Consensus 43 ~~~~C~~f~~~G~C~~-~~C~y~H~~ 67 (72)
T 2rhk_C 43 KMSECYFYSKFGECSN-KECPFLHID 67 (72)
T ss_dssp SCCBCHHHHHHSCCSB-TTCCSBCCC
T ss_pred cCCcccccCCCCCCCC-CCeeccCCC
Confidence 3568999999 99999 999999953
No 237
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A
Probab=92.53 E-value=0.053 Score=50.78 Aligned_cols=51 Identities=31% Similarity=0.421 Sum_probs=40.8
Q ss_pred HHHhhhccCCCchhhhHhhhhcccCChhHHHHHhcCchHHHHHHHHHHHHHhhh
Q 006992 10 VFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKELVR 63 (622)
Q Consensus 10 v~~riq~l~pe~askI~g~ll~qd~~e~emirlA~gpd~ll~~~i~kak~~L~~ 63 (622)
+|-+|++++||+|.||.|+||= .+..|++.|=-.|| +|++.|..|-.-|.-
T Consensus 74 LyplV~~~~p~~A~KITGMLLE--md~~ElL~LLes~e-~L~~kV~EA~~vL~~ 124 (144)
T 1g9l_A 74 LFPLIQAMHPTLAGKITGMLLE--IDNSELLHMLESPE-SLRSKVDEAVAVLQA 124 (144)
T ss_dssp SHHHHHHHTTSCCSSHHHHTTT--SSSHHHHHHHHCTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCccccchhhhhhcc--CCHHHHHHHHcCHH-HHHHHHHHHHHHHHH
Confidence 6899999999999999999985 55668888876665 567777777777753
No 238
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=92.25 E-value=0.28 Score=43.26 Aligned_cols=54 Identities=19% Similarity=0.319 Sum_probs=42.9
Q ss_pred CceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhC
Q 006992 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKG 432 (622)
Q Consensus 373 ~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~m 432 (622)
.+-++| .. +..+...||.++|+.||- ..|+.+-| --|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~F-P~ewKt~DI~~lFs~fgg-v~I~WidD---TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TF-PKEWKTSDLYQLFSAFGN-IQISWIDD---TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-EC-CTTCCHHHHHHHHTTTCS-CCCEEEET---TEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eC-ChhhhhHHHHHHhhccCC-EEEEEEcC---CeEEEEecCHHHHHHHHHhc
Confidence 344566 55 678999999999999994 34555654 47999999999999999875
No 239
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=92.04 E-value=0.4 Score=41.46 Aligned_cols=65 Identities=8% Similarity=0.068 Sum_probs=54.3
Q ss_pred ceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc------CCCceEEEEECCHHHHHHHHHhCCCceEcC
Q 006992 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ------QKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (622)
Q Consensus 374 rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D------ksRGFGFVtF~~~e~A~~Al~~mng~~I~G 439 (622)
.||.|.+| +..+||+++.+..+.+.++...+.+.+ ..-.-|+|.|.+.+++..-.+.++|+.+.+
T Consensus 2 ~KvVIRrL-PP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRL-PPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEE-CTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCC-CCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 58999999 899999999999999998777666554 122469999999999999999988887743
No 240
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=90.22 E-value=0.097 Score=47.30 Aligned_cols=40 Identities=10% Similarity=-0.113 Sum_probs=36.8
Q ss_pred CCCceEEEEECCHHHHHHHHHhC-CCceEcCeEEEEEeCccC
Q 006992 410 QKRMFGFVTFVYPETVKIILAKG-NPHFVCDARVLVKPYKEK 450 (622)
Q Consensus 410 ksRGFGFVtF~~~e~A~~Al~~m-ng~~I~GR~I~Vk~Ak~K 450 (622)
+-+|+++|+|.+.++|++|+++| |+..|+| .+.|.++..+
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 67899999999999999999999 9999999 9999987654
No 241
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=90.16 E-value=0.069 Score=46.13 Aligned_cols=23 Identities=22% Similarity=0.667 Sum_probs=20.9
Q ss_pred CccccccccccccCCCCCCccCCC
Q 006992 230 GWRPCLYFARGYCKNGSSCRFVHG 253 (622)
Q Consensus 230 ~~kpC~YFakG~CK~G~sCry~Hg 253 (622)
.+-.|.+|.||.|.++ +|+|+|.
T Consensus 50 ~~~vC~dflkG~C~r~-~Cky~H~ 72 (89)
T 2rpp_A 50 RVIACFDSLKGRCSRE-NCKYLHP 72 (89)
T ss_dssp BEEBCHHHHHTCCCCT-TCCSBCC
T ss_pred ceeeehhhhhCcCCCC-CcceecC
Confidence 4778999999999999 8999994
No 242
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=89.55 E-value=0.33 Score=42.90 Aligned_cols=53 Identities=21% Similarity=0.325 Sum_probs=42.6
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCC
Q 006992 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN 433 (622)
Q Consensus 375 tIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mn 433 (622)
-++| +. +.++...||.++|+.|| -..|+.+-| --|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~F-P~ewKt~Di~~lFs~fg-gv~I~WidD---TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TF-PKEWKTSDLYQLFSAFG-NIQISWIDD---TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-EC-CTTCCHHHHHHHTTTSE-EEEEEEEET---TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eC-ChhhhhHHHHHHHhccC-CEEEEEEcC---CeEEEEecCHHHHHHHHHhcc
Confidence 4566 55 57899999999999999 445565654 479999999999999999753
No 243
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=77.28 E-value=3.4 Score=36.16 Aligned_cols=68 Identities=7% Similarity=0.070 Sum_probs=49.3
Q ss_pred CCCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeecc------CCCceEEEEECCHHHHHHHHHhCCCceEcC
Q 006992 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ------QKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (622)
Q Consensus 371 ~~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~D------ksRGFGFVtF~~~e~A~~Al~~mng~~I~G 439 (622)
..+-||.|..| +..+||+++.+.++.+=++...+.+.+ ..-.-|+|.|.+.+++..-.+..+|+.+-+
T Consensus 7 ~~~~KvVIRrL-PP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 7 HHSHMVVIRRL-PPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCCEEEECC-CSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ccceeEEEeCC-CCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 34568999999 889999998877776544332222222 112349999999999999999988887743
No 244
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=69.75 E-value=0.93 Score=35.24 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=20.5
Q ss_pred CCcccccc-ccccccCCCCCCccCCC
Q 006992 229 LGWRPCLY-FARGYCKNGSSCRFVHG 253 (622)
Q Consensus 229 ~~~kpC~Y-FakG~CK~G~sCry~Hg 253 (622)
....+|.- -+-|+|.+|..|.+.|.
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHD 43 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHD 43 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCC
T ss_pred cccchhhhccccccCCCCCCCCcccc
Confidence 45668864 46899999999999994
No 245
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=65.79 E-value=14 Score=40.65 Aligned_cols=56 Identities=21% Similarity=0.423 Sum_probs=44.6
Q ss_pred CCceEEEcCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCceEEEEECCHHHHHHHHHhCC
Q 006992 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN 433 (622)
Q Consensus 372 ~~rtIYVGnL~~~~~TEedLre~FsqFG~V~dVrI~~DksRGFGFVtF~~~e~A~~Al~~mn 433 (622)
....++|+. +..+...+|.+.|+.||.| +|+.+- ...|||.|.+.+.|..++..++
T Consensus 439 R~~vl~v~f--~~~~~~~~i~~~fs~fg~v-~V~wid---dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVTF--PKEWKTSDLYQLFSAFGNI-QISWID---DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEEC--CTTCCHHHHHHHGGGGCCC-EEEECS---SSEEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEeC--CCCCCHHHHHHHHHhcCCE-EEEEEc---CCeEEEEECCHHHHHHHHHHHH
Confidence 455677774 4577889999999999954 565554 4579999999999999999874
No 246
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=41.71 E-value=16 Score=36.46 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=21.1
Q ss_pred CccccccccccccCCCCCCccCCC
Q 006992 230 GWRPCLYFARGYCKNGSSCRFVHG 253 (622)
Q Consensus 230 ~~kpC~YFakG~CK~G~sCry~Hg 253 (622)
-+.+|.||-+|.|+. .+|+-.|.
T Consensus 174 kLHIC~~Fl~G~C~f-~~CkRsH~ 196 (229)
T 3u9g_A 174 RLHICEHFTRGNCSY-LNCLRSHN 196 (229)
T ss_dssp SBCSCHHHHTTCCCC-SSCSSCCC
T ss_pred ceeccchhhcCCcCC-CCccCccC
Confidence 478999999999999 89999993
No 247
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=37.86 E-value=10 Score=37.99 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=21.8
Q ss_pred CCcccccccccccc----CCCCCCccCCC
Q 006992 229 LGWRPCLYFARGYC----KNGSSCRFVHG 253 (622)
Q Consensus 229 ~~~kpC~YFakG~C----K~G~sCry~Hg 253 (622)
-.+..|+||.-|.| ..|+.|+|.|.
T Consensus 87 ~~LHLCK~~l~G~C~~~~~~~~~Ck~SHd 115 (229)
T 3u9g_A 87 DSLHLCKLNLLGRCHYAQSQRNLCKYSHD 115 (229)
T ss_dssp CSBCCCHHHHTTCCGGGTCCSSCCSSCSC
T ss_pred cceeechhhhcCcCCcccCCCCCcccccc
Confidence 36889999999999 45799999994
No 248
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=36.19 E-value=8.5 Score=38.37 Aligned_cols=23 Identities=39% Similarity=0.803 Sum_probs=0.0
Q ss_pred CCCccccccccccccCCCCCCccCC
Q 006992 228 GLGWRPCLYFARGYCKNGSSCRFVH 252 (622)
Q Consensus 228 ~~~~kpC~YFakG~CK~G~sCry~H 252 (622)
+..|.||-|=- -|.-|+.|+|.|
T Consensus 189 ~~~~~~~~~~~--~~~~~~~~~~~~ 211 (223)
T 3v33_A 189 EHRKQPCPYGR--KCTYGIKCRFFH 211 (223)
T ss_dssp -------------------------
T ss_pred ccCCCCCCCCc--ccccCCcceecC
Confidence 44689999964 699999999999
No 249
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=29.85 E-value=10 Score=25.02 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=12.2
Q ss_pred chhhhHhhhhcccC
Q 006992 21 NASKIMGLLLLQDH 34 (622)
Q Consensus 21 ~askI~g~ll~qd~ 34 (622)
++.||-+.|||||+
T Consensus 1 ~VGKiYAallI~d~ 14 (23)
T 3dve_B 1 HMGKVYAALMIFDF 14 (26)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH
Confidence 57899999999986
No 250
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=27.53 E-value=12 Score=24.72 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=12.5
Q ss_pred chhhhHhhhhcccC
Q 006992 21 NASKIMGLLLLQDH 34 (622)
Q Consensus 21 ~askI~g~ll~qd~ 34 (622)
++.||-+.|||||+
T Consensus 2 ~VGKiYA~llI~d~ 15 (23)
T 3dvk_B 2 HMGKIYAAMMIMDY 15 (26)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 68899999999986
No 251
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=23.67 E-value=47 Score=26.45 Aligned_cols=69 Identities=13% Similarity=0.087 Sum_probs=42.7
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhccCCce-----eEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEEeCc
Q 006992 375 QIYLTFPADSTFREEDVSNYFSIYGPVQ-----DVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (622)
Q Consensus 375 tIYVGnL~~~~~TEedLre~FsqFG~V~-----dVrI~~DksRGFGFVtF~~~e~A~~Al~~mng~~I~GR~I~Vk~Ak 448 (622)
++||..=....++..+|-.++..-+.|. .|+|. -.|.||.-.. +.++.+++.+++..+.|+++.|..++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~----d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM----DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC----SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe----CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 4555433234667777777777655443 44443 3589998665 55788899999999999999998764
No 252
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=22.33 E-value=20 Score=27.47 Aligned_cols=21 Identities=24% Similarity=0.853 Sum_probs=18.0
Q ss_pred cccccccccccCCCCCCccCCC
Q 006992 232 RPCLYFARGYCKNGSSCRFVHG 253 (622)
Q Consensus 232 kpC~YFakG~CK~G~sCry~Hg 253 (622)
.||.=-.++||.|| .|+|.++
T Consensus 10 ~~C~~~~~~yC~nG-~C~~i~~ 30 (50)
T 2rnl_A 10 NPCNAEFQNFCIHG-ECKYIEH 30 (50)
T ss_dssp CTTTTTGGGTCSSS-EEEEETT
T ss_pred cccCchhhCcCCCC-EEEEecC
Confidence 58887778999999 8999884
No 253
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=20.77 E-value=1.7e+02 Score=23.98 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=42.7
Q ss_pred hhhHHHHHHhhhccCCCchh--hhHhhhhcccCChhHHHH-----HhcCch----HHHHHHHHHHHHH
Q 006992 4 YEATRIVFSRIQNLDPENAS--KIMGLLLLQDHGEKEMIR-----LAFGPE----ALVHSVILKARKE 60 (622)
Q Consensus 4 ~e~t~~v~~riq~l~pe~as--kI~g~ll~qd~~e~emir-----lA~gpd----~ll~~~i~kak~~ 60 (622)
++..+-+|.|.-++||+|+. -.+|.+.+|...=++-|. |...|+ ..|..-|.+||..
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~i~~~I~~A~~~ 92 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVTIIESINKAKKL 92 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhc
Confidence 45667789999999999965 556778887666666665 666776 5788888888864
No 254
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Probab=20.59 E-value=23 Score=27.20 Aligned_cols=21 Identities=29% Similarity=0.727 Sum_probs=17.1
Q ss_pred cccccccccccCCCCCCccCCC
Q 006992 232 RPCLYFARGYCKNGSSCRFVHG 253 (622)
Q Consensus 232 kpC~YFakG~CK~G~sCry~Hg 253 (622)
.||.=-.++||-|| .|.|.+.
T Consensus 6 ~~C~~~~~~yC~nG-~C~~~~~ 26 (50)
T 3e50_C 6 NDCPDSHTQFCFHG-TCRFLVQ 26 (50)
T ss_pred cccChhhcCcccCC-EEeeccC
Confidence 46766678999999 9999874
Done!