Your job contains 1 sequence.
>006993
MRYWRKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQ
ISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLL
DGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVL
PPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSR
NKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTA
GTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALS
KVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRE
LVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNL
LTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYA
TEDDDSEDEGDEAYLEMYAGGNDNEDEIDNSTHNLEMESDFPYHAQDQESETELMDSESE
AYTVHSTYCASTDIVEEDNNFY
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 006993
(622 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2094558 - symbol:CFM3A "CRM family member 3A" ... 1600 2.1e-180 3
TAIR|locus:2094997 - symbol:EMB1865 "embryo defective 186... 1011 8.2e-114 3
TAIR|locus:2096662 - symbol:CFM2 "CRM family member 2" sp... 956 3.7e-96 1
TAIR|locus:2181372 - symbol:CRS1 "ortholog of maize chlor... 783 6.5e-81 2
TAIR|locus:2094438 - symbol:LOH1 "LAG One Homologue 1" sp... 279 8.3e-22 1
TAIR|locus:2123276 - symbol:AT4G13070 species:3702 "Arabi... 245 6.2e-19 1
TAIR|locus:2091458 - symbol:AT3G27550 species:3702 "Arabi... 238 7.8e-17 2
TAIR|locus:2056558 - symbol:AT2G28480 species:3702 "Arabi... 226 4.6e-16 1
TAIR|locus:2061604 - symbol:CAF1 species:3702 "Arabidopsi... 85 0.00075 2
TAIR|locus:2126694 - symbol:AT4G31010 species:3702 "Arabi... 117 0.00094 1
>TAIR|locus:2094558 [details] [associations]
symbol:CFM3A "CRM family member 3A" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0000373 "Group II
intron splicing" evidence=IMP] [GO:0048316 "seed development"
evidence=IGI] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 GO:GO:0009507 EMBL:CP002686 GO:GO:0003723
GO:GO:0048316 Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373
IPI:IPI00537962 RefSeq:NP_188947.2 UniGene:At.6125 UniGene:At.71222
ProteinModelPortal:F4J2U9 SMR:F4J2U9 PRIDE:F4J2U9
EnsemblPlants:AT3G23070.1 GeneID:821881 KEGG:ath:AT3G23070
OMA:VEILRHE Uniprot:F4J2U9
Length = 881
Score = 1600 (568.3 bits), Expect = 2.1e-180, Sum P(3) = 2.1e-180
Identities = 315/486 (64%), Positives = 378/486 (77%)
Query: 84 SYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADML 143
S VH Q+ ET S E++ V+YEDE+++LLD LGPR+ DWPG +PLPVDAD+L
Sbjct: 342 SDEKVHLPQLEQETTSVEKKDQTSPVVEYEDELDELLDDLGPRFMDWPGDNPLPVDADLL 401
Query: 144 PGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLW 203
PG +P Y+PPFRVLPYGVRS+L KEAT L+RLAR +PPHFALGRSRQLQGLA AM++LW
Sbjct: 402 PGAIPDYEPPFRVLPYGVRSSLGPKEATALRRLARSIPPHFALGRSRQLQGLATAMVRLW 461
Query: 204 EKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQ 263
EKS +AKIA+KRGVQ TTSERM ED+KKLTGG +LSRNKDFLVFYRGKNFLS +V +AL
Sbjct: 462 EKSMLAKIAIKRGVQSTTSERMAEDLKKLTGGIMLSRNKDFLVFYRGKNFLSREVADALV 521
Query: 264 ERERLAKSLQDEEEQARLR-ASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDS-H 321
E+ER ++LQDEEEQARLR +SA ++PS E K +AGTL ETLDA +WGK LDD H
Sbjct: 522 EQERFVRTLQDEEEQARLRGSSALIVPSTEPANKLVSAGTLGETLDATGKWGKNLDDDDH 581
Query: 322 KENLVREAEVRRHAYLVQXXXXXXXXXXXXXXXXXXXXSKVEESLKPAERQADPESITDE 381
+ + +E E+ RH LV+ +KVE LKPAE++ DPESITDE
Sbjct: 582 SDEVKQEVEILRHENLVRKLERKLAFAERKLLKAERGLAKVEVCLKPAEQREDPESITDE 641
Query: 382 ERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALAL 441
ERFMFRKLGL+MKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK KTFD KK+ALAL
Sbjct: 642 ERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVKKVALAL 701
Query: 442 EAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLK 501
EAESGG+LVS+DK++KGYA++VYRG+DY+RP+ LRPKNLLTKRKALARSIELQR+E LLK
Sbjct: 702 EAESGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLLTKRKALARSIELQRREGLLK 761
Query: 502 HVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATXXXXXXXXXXX-AYLEMYAG 560
H++T+++ A +LR+EIEQM V GDE+LY+KLD AYA+ A+ E YA
Sbjct: 762 HISTMQAKAKQLRAEIEQMEKVTDKGDEELYNKLDMAYASSDEETDEEDDDDAFPETYAE 821
Query: 561 GNDNED 566
G D E+
Sbjct: 822 GEDGEE 827
Score = 151 (58.2 bits), Expect = 2.1e-180, Sum P(3) = 2.1e-180
Identities = 30/51 (58%), Positives = 40/51 (78%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDK 55
+KTGGLVIWRSGT++SLYRGVSYE+PS + NK+ +R E P +V + D+
Sbjct: 286 KKTGGLVIWRSGTSISLYRGVSYELPSGKWNKQ--RREETPPEAVIENHDE 334
Score = 38 (18.4 bits), Expect = 2.1e-180, Sum P(3) = 2.1e-180
Identities = 12/49 (24%), Positives = 20/49 (40%)
Query: 565 EDEIDNSTHNLEMESDFPYHAQDQESETELMDSESEAYTVHSTYCASTD 613
E D L + D Y + D+E++ E + +A+ TY D
Sbjct: 781 EKVTDKGDEELYNKLDMAYASSDEETDEE---DDDDAFP--ETYAEGED 824
>TAIR|locus:2094997 [details] [associations]
symbol:EMB1865 "embryo defective 1865" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=NAS] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0006655
"phosphatidylglycerol biosynthetic process" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0016117
"carotenoid biosynthetic process" evidence=RCA] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 GO:GO:0009737 GO:GO:0009507
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723 EMBL:AB026658
Gene3D:3.30.110.60 SUPFAM:SSF75471 HOGENOM:HOG000241574
EMBL:AY063908 IPI:IPI00520842 RefSeq:NP_188468.1 UniGene:At.20890
ProteinModelPortal:Q9LS51 SMR:Q9LS51 STRING:Q9LS51 PaxDb:Q9LS51
PRIDE:Q9LS51 EnsemblPlants:AT3G18390.1 GeneID:821368
KEGG:ath:AT3G18390 TAIR:At3g18390 eggNOG:NOG326934
InParanoid:Q9LS51 OMA:DMKTAHE PhylomeDB:Q9LS51
ProtClustDB:CLSN2684381 ArrayExpress:Q9LS51 Genevestigator:Q9LS51
Uniprot:Q9LS51
Length = 848
Score = 1011 (360.9 bits), Expect = 8.2e-114, Sum P(3) = 8.2e-114
Identities = 203/416 (48%), Positives = 278/416 (66%)
Query: 108 REVKYEDEVE--KLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTL 165
+E E+EVE LLD LGPR+ +W G LPVDAD+LP +PGY+ PFR+LP G+RS L
Sbjct: 383 KENMTEEEVEFNSLLDSLGPRFQEWWGTGVLPVDADLLPPTIPGYKTPFRLLPTGMRSNL 442
Query: 166 ARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERM 225
E TNL+++ + LP HFALGR+R QGLA A++++WEKS IAKIA+KRG+Q T ++ M
Sbjct: 443 TNAEMTNLRKIGKTLPCHFALGRNRNHQGLAAAILQIWEKSLIAKIAVKRGIQNTNNKLM 502
Query: 226 VEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASA 285
+++K LTGG LL RNK ++V YRGK+FL V L ER+ L K +QD EE+ R R
Sbjct: 503 ADEVKTLTGGVLLLRNKYYIVIYRGKDFLPSSVAATLAERQELTKEIQDVEERVRNREIE 562
Query: 286 FVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQXXXXXX 345
V P + + AGTL E +A +RWGK + H+E ++ EA +A +V+
Sbjct: 563 AVQPVGDKVPAE--AGTLAEFYEAQARWGKEITPDHREKMIEEASRVANARVVKRIQHKL 620
Query: 346 XXXXXXXXXXXXXXSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVF 405
SK+E S+ P D E I++EER MFRK+GL+MKA+L +G RGVF
Sbjct: 621 NLAQSKFQRAEKLLSKIEASMIPNGPDYDQEVISEEERAMFRKVGLKMKAYLPIGIRGVF 680
Query: 406 DGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYR 465
DG +ENMHLHWK+RELVK+I K K ++ A LE ESGGVLV+++K+ KG+A++ YR
Sbjct: 681 DGVIENMHLHWKHRELVKLISKQKNQAFVEETARLLEYESGGVLVAIEKVPKGFALIYYR 740
Query: 466 GKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMN 521
GK+Y+RP +LRP+NLLTK KAL RSI +QR EAL +H++ LE +++S++ N
Sbjct: 741 GKNYRRPISLRPRNLLTKAKALKRSIAMQRHEALSQHISELERTIEQMQSQLTSKN 796
Score = 106 (42.4 bits), Expect = 8.2e-114, Sum P(3) = 8.2e-114
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
R+TGG+VIWR+G+ + +YRG+ Y+ P V N+ + L VS A D+ + + + S
Sbjct: 308 RRTGGMVIWRAGSVMVVYRGLDYKGPPVISNQMAGPKETLFVPDVSSAGDEATNAKDNQS 367
Score = 40 (19.1 bits), Expect = 8.2e-114, Sum P(3) = 8.2e-114
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 564 NEDEIDNSTHNLEMESDFPYHAQDQESETELMDSESEAYTVHSTYCAS 611
+E E +N + + E + +D ES+ + D ES ++ +S
Sbjct: 800 SESEWENDEDDDDDEEEEKDDVEDNESDWDETDGESAISSIEEADMSS 847
>TAIR|locus:2096662 [details] [associations]
symbol:CFM2 "CRM family member 2" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;RCA] [GO:0000372 "Group I
intron splicing" evidence=IMP] [GO:0000373 "Group II intron
splicing" evidence=IMP] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 EMBL:CP002686 GO:GO:0003723
Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373 GO:GO:0000372
EMBL:AY136347 EMBL:BT010594 IPI:IPI00518423 RefSeq:NP_186786.2
UniGene:At.28082 ProteinModelPortal:Q8L7C2 SMR:Q8L7C2 IntAct:Q8L7C2
STRING:Q8L7C2 PaxDb:Q8L7C2 PRIDE:Q8L7C2 EnsemblPlants:AT3G01370.1
GeneID:821288 KEGG:ath:AT3G01370 TAIR:At3g01370 eggNOG:NOG300241
InParanoid:Q8L7C2 OMA:ASMIKLW PhylomeDB:Q8L7C2
ProtClustDB:CLSN2690653 ArrayExpress:Q8L7C2 Genevestigator:Q8L7C2
Uniprot:Q8L7C2
Length = 1011
Score = 956 (341.6 bits), Expect = 3.7e-96, P = 3.7e-96
Identities = 211/503 (41%), Positives = 300/503 (59%)
Query: 109 EVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARK 168
EV+ +E ++LL+GLGPR+TDW DPLPVD D+LP +VP Y+ PFR+LPYGV L
Sbjct: 322 EVQLVEEADRLLEGLGPRFTDWWAYDPLPVDGDLLPAVVPDYRRPFRLLPYGVSPKLTDD 381
Query: 169 EATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVED 228
E T ++RL R LP HFALGR+R LQGLAVA++KLWEK +AKIA+KRGVQ T SE M E+
Sbjct: 382 EMTTIRRLGRPLPCHFALGRNRNLQGLAVAIVKLWEKCELAKIAVKRGVQNTNSELMAEE 441
Query: 229 IKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVL 288
+K LTGGTL+SR+KDF+V YRGK+FL V+ A++ER R +++ +
Sbjct: 442 LKWLTGGTLISRDKDFIVLYRGKDFLPSAVSSAIEERRRQTMIMENSSVHGNK-----LT 496
Query: 289 PSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQXXXXXXXXX 348
+ E I+ +KE ++ ++ K +H+ ++ + +++
Sbjct: 497 ENEEEIKPRA----VKEDIELEAKDQKDHIQTHQ---MKSRQRNSPEAILEKTSMKLSMA 549
Query: 349 XXXXXXXXXXXSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGT 408
+ +E P D E IT++E++M RK+GL+MK FLLLGRRGVFDGT
Sbjct: 550 LEKKANAEKVLADLENRESPQLSDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGT 609
Query: 409 VENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKD 468
+ENMHLHWKYRELVKII + + A K+A LEAESGG+LV+V+ +SKGYA++VYRGK+
Sbjct: 610 IENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVYRGKN 669
Query: 469 YQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVK---- 524
Y+RP LRP+ LL+KR+AL RS+E QR+++L HV L +N L ++ + ++
Sbjct: 670 YERPQCLRPQTLLSKREALKRSVEAQRRKSLKLHVLKLSNNIEELNRQLVEDSATNETWS 729
Query: 525 -GTGDEQLYDKLDSAYATXXXXXXXXXXXAY---LEMYAGGNDN-ED----EIDN-STHN 574
G + ++ T Y L + + G +N ED E+D +T +
Sbjct: 730 DGESSNMMVEEETENQHTEPEKAREKIELGYSSDLSVPSSGEENWEDDSEGEVDPLTTSS 789
Query: 575 LEMESDFPYHAQDQESETELMDS 597
E + D A Q E +DS
Sbjct: 790 QEYQEDESESASSQRHEGNSLDS 812
Score = 594 (214.2 bits), Expect = 9.6e-64, Sum P(2) = 9.6e-64
Identities = 127/262 (48%), Positives = 169/262 (64%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
KTGGLVIWRSG+ + LYRGV+Y+ P ++ + ASS+ Q KQ S++
Sbjct: 232 KTGGLVIWRSGSKILLYRGVNYQYPYFVSDRDLAHEAASGASSMDQGVVDSREKQ-SIAE 290
Query: 66 NSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGP 125
+S + +K + P + + L EV+ +E ++LL+GLGP
Sbjct: 291 SSAPSITNKMVK-PMLTQGVGSPDKVRFQLPG-----------EVQLVEEADRLLEGLGP 338
Query: 126 RYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFA 185
R+TDW DPLPVD D+LP +VP Y+ PFR+LPYGV L E T ++RL R LP HFA
Sbjct: 339 RFTDWWAYDPLPVDGDLLPAVVPDYRRPFRLLPYGVSPKLTDDEMTTIRRLGRPLPCHFA 398
Query: 186 LGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFL 245
LGR+R LQGLAVA++KLWEK +AKIA+KRGVQ T SE M E++K LTGGTL+SR+KDF+
Sbjct: 399 LGRNRNLQGLAVAIVKLWEKCELAKIAVKRGVQNTNSELMAEELKWLTGGTLISRDKDFI 458
Query: 246 VFYRGKNFLSPDVTEALQERER 267
V YRGK+FL V+ A++ER R
Sbjct: 459 VLYRGKDFLPSAVSSAIEERRR 480
Score = 126 (49.4 bits), Expect = 0.00035, P = 0.00035
Identities = 35/141 (24%), Positives = 74/141 (52%)
Query: 387 RKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESG 446
R +G+R+ L +G+ G+ +G V +H W+ E+VKI + + K+ LE ++G
Sbjct: 175 RTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVLETKTG 234
Query: 447 GVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATL 506
G+++ G +++YRG +YQ P + ++L + + A S++ ++ K +
Sbjct: 235 GLVIW----RSGSKILLYRGVNYQYPYFVSDRDLAHEAASGASSMDQGVVDSREKQ-SIA 289
Query: 507 ESNAGRLRSEIEQMNSVKGTG 527
ES+A + +++ + +G G
Sbjct: 290 ESSAPSITNKMVKPMLTQGVG 310
Score = 102 (41.0 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 26/93 (27%), Positives = 52/93 (55%)
Query: 160 GVRSTLARKEATNLQRLARVLP--PHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGV 217
G+ + L+ +E L++ A + P FA+GRS + GLA + ++K+ +A + +K
Sbjct: 870 GLVTDLSNRERLILRKQALKMKKRPPFAVGRSNVVTGLARTLKMHFQKNPLAIVNVKGRA 929
Query: 218 QLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRG 250
T+ + ++ +K+ TG L+S+ ++ YRG
Sbjct: 930 NGTSVQEVIAKLKEETGALLVSQEPSKVILYRG 962
Score = 89 (36.4 bits), Expect = 9.6e-64, Sum P(2) = 9.6e-64
Identities = 31/104 (29%), Positives = 55/104 (52%)
Query: 370 ERQADPES-ITD---EERFMFRKLGLRMKAF--LLLGRRGVFDGTVENMHLHWKYRELVK 423
ER+++ + +TD ER + RK L+MK +GR V G + +H++ L
Sbjct: 863 ERKSENDGLVTDLSNRERLILRKQALKMKKRPPFAVGRSNVVTGLARTLKMHFQKNPLAI 922
Query: 424 IIVKVKTFDQAKKIALA-LEAESGGVLVSVDKISKGYAMVVYRG 466
+ VK + + + +A L+ E+G +LVS + SK +++YRG
Sbjct: 923 VNVKGRANGTSVQEVIAKLKEETGALLVSQEP-SK---VILYRG 962
Score = 79 (32.9 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 20/104 (19%), Positives = 49/104 (47%)
Query: 6 KTGGLVIW----RSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQI 61
++GG+++ G A+ +YRG +YE P + + + E SV K + +
Sbjct: 645 ESGGILVAVEMVSKGYAIIVYRGKNYERPQCLRPQTLLSKREALKRSVEAQRRKSLKLHV 704
Query: 62 SMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETD 105
N++ + +D + +++++ ++ + +E +E Q T+
Sbjct: 705 LKLSNNIEELNRQLVEDSATNETWSDGESSNMMVEEETENQHTE 748
>TAIR|locus:2181372 [details] [associations]
symbol:CRS1 "ortholog of maize chloroplast splicing
factor CRS1" species:3702 "Arabidopsis thaliana" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0000373 "Group II intron splicing" evidence=IDA]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 Gene3D:3.30.110.60
SUPFAM:SSF75471 GO:GO:0000373 EMBL:AL391148 IPI:IPI00521200
PIR:T51488 RefSeq:NP_197122.2 UniGene:At.50459 UniGene:At.54863
ProteinModelPortal:Q9LF10 SMR:Q9LF10 PaxDb:Q9LF10 PRIDE:Q9LF10
GeneID:831476 KEGG:ath:AT5G16180 TAIR:At5g16180 eggNOG:NOG322716
HOGENOM:HOG000241574 InParanoid:Q9LF10 OMA:KIERSNQ
ArrayExpress:Q9LF10 Genevestigator:Q9LF10 Uniprot:Q9LF10
Length = 720
Score = 783 (280.7 bits), Expect = 6.5e-81, Sum P(2) = 6.5e-81
Identities = 174/405 (42%), Positives = 248/405 (61%)
Query: 98 ASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVL 157
+SE Q D + YE E ++LLDGLGPRY DW P PVDAD+LP +V GY P R
Sbjct: 296 SSEGQ--DEISSSLYEREADRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRC 353
Query: 158 PYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGV 217
P R+ L +E T L+ +A+ LP HF LGR+ LQGLA A++KLWEK IAKIA+K G
Sbjct: 354 PPNTRAKLTDEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGA 413
Query: 218 QLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEE 277
T +E M ++++ LTGG L+ RNK +V YRGK+FLS +V + +++RERL Q EE
Sbjct: 414 LNTNNEEMADELRYLTGGVLILRNKYLIVLYRGKDFLSDEVADLVEDRERLLSRYQHFEE 473
Query: 278 QARLRASAF--VLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHA 335
R V+ + + ++++ +GTL E + ++G+ +D NL EAE R
Sbjct: 474 TKRESDIELLEVVTNGKQLKETNKSGTLLEFQELQRKFGE-MDP---RNLETEAEKARLE 529
Query: 336 YLVQXXXXXXXXXXXXXXXXXXXXSKVEESLKPAERQADPESITDEERFMFRKLGLRMKA 395
++ K+ KP+E D E +T+EER R++GL+M +
Sbjct: 530 KELKSQEHKLSILKSKIEKSNMELFKLNSLWKPSEGDDDIEILTNEERECLRRIGLKMNS 589
Query: 396 FLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKI 455
L+LGRRGVF G +E +H HWK+RE+ K+I K F + A ALE ES GVL+S++K+
Sbjct: 590 SLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSRVVYTAKALETESNGVLISIEKL 649
Query: 456 SKGYAMVVYRGKDYQRPST-LRPKNLLTKRKALARSIELQRQEAL 499
+G+A+++YRGK+Y+RPS+ L +NLLTKRKAL RS+ +QR +L
Sbjct: 650 KEGHAILIYRGKNYKRPSSKLMAQNLLTKRKALQRSVVMQRLGSL 694
Score = 48 (22.0 bits), Expect = 6.5e-81, Sum P(2) = 6.5e-81
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 6 KTGGLVIWRSGTAVSLYRG-VSYEVPSV-QLNKRIYKR 41
KTGGLV+ + +YRG SY +++ +Y+R
Sbjct: 273 KTGGLVVLSKKEFLVVYRGGPSYSSEGQDEISSSLYER 310
>TAIR|locus:2094438 [details] [associations]
symbol:LOH1 "LAG One Homologue 1" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0042761 "very
long-chain fatty acid biosynthetic process" evidence=IGI]
[GO:0050291 "sphingosine N-acyltransferase activity" evidence=IGI]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
EMBL:AB025639 GO:GO:0042761 Gene3D:3.30.110.60 SUPFAM:SSF75471
GO:GO:0050291 KO:K01148 EMBL:AK176804 IPI:IPI00542084
RefSeq:NP_189171.2 UniGene:At.37388 ProteinModelPortal:Q67XL4
SMR:Q67XL4 PaxDb:Q67XL4 PRIDE:Q67XL4 EnsemblPlants:AT3G25440.1
GeneID:822128 KEGG:ath:AT3G25440 TAIR:At3g25440 eggNOG:NOG254408
HOGENOM:HOG000240887 InParanoid:Q67XL4 OMA:RRYIPRL PhylomeDB:Q67XL4
ProtClustDB:CLSN2681576 Genevestigator:Q67XL4 Uniprot:Q67XL4
Length = 444
Score = 279 (103.3 bits), Expect = 8.3e-22, P = 8.3e-22
Identities = 58/160 (36%), Positives = 100/160 (62%)
Query: 361 KVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRE 420
K+E S + AE DPE +T EE F + K+GL+ K ++ +GRRG++ G + NMHLHWK +
Sbjct: 161 KLEPS-ESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 219
Query: 421 LVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPST--LRPK 478
+++++K T D+ K+IA+ L +GG+++ V + G +++YRGK+Y +P T + P+
Sbjct: 220 TLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHE---GNTIIMYRGKNYVQPPTEIMSPR 276
Query: 479 NLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIE 518
L ++KAL +S A+ K++ LE L+++ E
Sbjct: 277 ITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQAE 316
>TAIR|locus:2123276 [details] [associations]
symbol:AT4G13070 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003723
Gene3D:3.30.110.60 SUPFAM:SSF75471 EMBL:BT022043 EMBL:BT029203
EMBL:AK175251 EMBL:AK176471 EMBL:AK176848 IPI:IPI00516587
RefSeq:NP_193043.2 UniGene:At.43316 ProteinModelPortal:Q67YJ7
SMR:Q67YJ7 EnsemblPlants:AT4G13070.1 GeneID:826921
KEGG:ath:AT4G13070 TAIR:At4g13070 eggNOG:NOG314366
HOGENOM:HOG000241798 InParanoid:Q67YJ7 OMA:NELRFYR PhylomeDB:Q67YJ7
ProtClustDB:CLSN2918582 Genevestigator:Q67YJ7 Uniprot:Q67YJ7
Length = 343
Score = 245 (91.3 bits), Expect = 6.2e-19, P = 6.2e-19
Identities = 62/160 (38%), Positives = 88/160 (55%)
Query: 361 KVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRE 420
K + PAE DPES+T+EE+ ++ G + K F+L+GRRGVF G V N+HLHWK E
Sbjct: 166 KYDVPKSPAEPY-DPESLTEEEQHYLKRTGEKRKNFVLVGRRGVFGGVVLNLHLHWKKHE 224
Query: 421 LVKIIVK-VKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKN 479
VK+I K Q + A L S G+++ V +V+YRGK+Y RP + P +
Sbjct: 225 TVKVICKPCNKPGQVHEYAEELARLSKGIVIDV---KPNNTIVLYRGKNYVRPEVMSPVD 281
Query: 480 LLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQ 519
L+K KAL E R E L+H + +L E+E+
Sbjct: 282 TLSKDKAL----EKYRYEQSLEHTSEFIE---KLEKELEE 314
>TAIR|locus:2091458 [details] [associations]
symbol:AT3G27550 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
Gene3D:3.30.110.60 SUPFAM:SSF75471 EMBL:AB025626 IPI:IPI00525575
RefSeq:NP_189392.1 UniGene:At.37034 ProteinModelPortal:Q9LT57
SMR:Q9LT57 EnsemblPlants:AT3G27550.1 GeneID:822377
KEGG:ath:AT3G27550 TAIR:At3g27550 eggNOG:NOG248894
HOGENOM:HOG000241218 InParanoid:Q9LT57 OMA:RMRKESG PhylomeDB:Q9LT57
ProtClustDB:CLSN2685015 Genevestigator:Q9LT57 Uniprot:Q9LT57
Length = 491
Score = 238 (88.8 bits), Expect = 7.8e-17, Sum P(2) = 7.8e-17
Identities = 48/140 (34%), Positives = 84/140 (60%)
Query: 374 DPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQ 433
DPE T E+ F+K+G + K ++ +G RGVF G V+NMH+HWK+ E V++ ++
Sbjct: 88 DPELFTSEQVQAFKKIGFKNKNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEK 147
Query: 434 AKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIEL 493
K++A + SGGV++++ + ++++RG++Y++P L P N LTKRKAL ++
Sbjct: 148 IKEMASMIARLSGGVVINIHNVK---TIIMFRGRNYRQPKNLIPVNTLTKRKALFKARFE 204
Query: 494 QRQEALLKHVATLESNAGRL 513
Q E+ ++ E R+
Sbjct: 205 QALESQKLNIKKTEQQLRRM 224
Score = 42 (19.8 bits), Expect = 7.8e-17, Sum P(2) = 7.8e-17
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 591 ETELMDSESEAYTVHSTYCASTDIVEEDN 619
+ + DSE E + Y +S+D E++N
Sbjct: 423 DNTMWDSEDEEDAPPANYISSSDDDEDEN 451
>TAIR|locus:2056558 [details] [associations]
symbol:AT2G28480 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
EMBL:AC006587 Gene3D:3.30.110.60 SUPFAM:SSF75471
HOGENOM:HOG000241798 EMBL:BT011753 EMBL:AK226713 IPI:IPI00526248
PIR:D84685 RefSeq:NP_180415.1 UniGene:At.50106
ProteinModelPortal:Q9SK10 SMR:Q9SK10 EnsemblPlants:AT2G28480.1
GeneID:817396 KEGG:ath:AT2G28480 TAIR:At2g28480 eggNOG:NOG245924
InParanoid:Q9SK10 OMA:ANRKDPR PhylomeDB:Q9SK10
ProtClustDB:CLSN2913133 Genevestigator:Q9SK10 Uniprot:Q9SK10
Length = 372
Score = 226 (84.6 bits), Expect = 4.6e-16, P = 4.6e-16
Identities = 51/133 (38%), Positives = 75/133 (56%)
Query: 375 PESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQA 434
P IT EERF +K+G + ++ +GRRGVF G + NMHLHWK E VK+I Q
Sbjct: 161 PHEITGEERFYLKKMGQKRSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICNNSKPGQV 220
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQ 494
++ A L SGGV V++ I ++ YRGK Y +P + P + L+K++A +S Q
Sbjct: 221 QQYAEELAKLSGGVPVNI--IGDD-TIIFYRGKGYVQPQVMSPIDTLSKKRAYEKSKYEQ 277
Query: 495 RQEALLKHVATLE 507
E++ +A E
Sbjct: 278 SLESVRHFIAIAE 290
>TAIR|locus:2061604 [details] [associations]
symbol:CAF1 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0000373 "Group II intron splicing" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0006399 "tRNA
metabolic process" evidence=RCA] [GO:0009658 "chloroplast
organization" evidence=RCA] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 GO:GO:0009570 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006397 GO:GO:0003723 GO:GO:0030529
EMBL:AC006081 HOGENOM:HOG000242611 ProtClustDB:CLSN2686958
Gene3D:3.30.110.60 SUPFAM:SSF75471 EMBL:AY045882 EMBL:BT004337
IPI:IPI00534960 PIR:A84584 RefSeq:NP_565462.1 UniGene:At.13487
ProteinModelPortal:Q9SL79 SMR:Q9SL79 STRING:Q9SL79 PaxDb:Q9SL79
PRIDE:Q9SL79 ProMEX:Q9SL79 EnsemblPlants:AT2G20020.1 GeneID:816521
KEGG:ath:AT2G20020 TAIR:At2g20020 eggNOG:NOG320222
InParanoid:Q9SL79 OMA:RRRVCKI PhylomeDB:Q9SL79
Genevestigator:Q9SL79 GO:GO:0000373 Uniprot:Q9SL79
Length = 701
Score = 85 (35.0 bits), Expect = 0.00076, Sum P(2) = 0.00075
Identities = 28/123 (22%), Positives = 51/123 (41%)
Query: 132 GCDPLPVDADMLPGIVPGY-QPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSR 190
G P+ PG+ P Y +L + R+ T+ + R L +GR
Sbjct: 213 GLKPVQKPGPFRPGVGPRYVYSKEEILGEPLTKEEVRELVTSCLKTTRQLN----MGRDG 268
Query: 191 QLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRG 250
+ + LW++ + KI K GV + + E +++ GG ++ R L +RG
Sbjct: 269 LTHNMLNNIHDLWKRRRVCKIKCK-GVCTVDMDNVCEQLEEKIGGKVIYRRGGVLFLFRG 327
Query: 251 KNF 253
+N+
Sbjct: 328 RNY 330
Score = 84 (34.6 bits), Expect = 0.00076, Sum P(2) = 0.00075
Identities = 28/107 (26%), Positives = 51/107 (47%)
Query: 372 QADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTF 431
Q PE +T +E R+ G + LG+ GV+ V+N+ ++ ELV+I +
Sbjct: 355 QQVPEGLTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCELVRIDCQGMKG 414
Query: 432 DQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPK 478
+KI L+ VLVS + ++++RG++++ T K
Sbjct: 415 SDFRKIGAKLKDLVPCVLVSFENEQ----ILIWRGREWKSSLTTPDK 457
>TAIR|locus:2126694 [details] [associations]
symbol:AT4G31010 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0010048 "vernalization response" evidence=RCA]
[GO:0048573 "photoperiodism, flowering" evidence=RCA]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
GO:GO:0005739 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 EMBL:AL022198
EMBL:AL161578 EMBL:AY042864 EMBL:AY072146 EMBL:AY096489
IPI:IPI00527272 PIR:B85363 RefSeq:NP_194830.2 UniGene:At.31782
UniGene:At.71202 ProteinModelPortal:Q8VYD9 SMR:Q8VYD9 PaxDb:Q8VYD9
PRIDE:Q8VYD9 EnsemblPlants:AT4G31010.1 GeneID:829228
KEGG:ath:AT4G31010 TAIR:At4g31010 eggNOG:NOG290479
HOGENOM:HOG000242611 InParanoid:Q8VYD9 OMA:MVRDAFL PhylomeDB:Q8VYD9
ProtClustDB:CLSN2686958 Genevestigator:Q8VYD9 Gene3D:3.30.110.60
SUPFAM:SSF75471 Uniprot:Q8VYD9
Length = 405
Score = 117 (46.2 bits), Expect = 0.00094, P = 0.00094
Identities = 40/121 (33%), Positives = 64/121 (52%)
Query: 361 KVEESLKPAERQADPESITDEERFMFRKLGLRMKAF--LLLGRRGVFDGTVENMHLHWKY 418
K+EE + + S+T+ ER +L R K + LGR G+ + +++ HWK+
Sbjct: 142 KLEEKRRKVREKIQGASLTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKH 201
Query: 419 RELVKI-IVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRP 477
E V++ + V T D K + LE ++ G +VS K S G +V+YRG++Y P RP
Sbjct: 202 AEAVRVKCLGVPTLDM-KNVIFHLEDKTFGQVVS--KHS-G-TLVLYRGRNYD-PKK-RP 254
Query: 478 K 478
K
Sbjct: 255 K 255
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.130 0.364 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 622 591 0.00084 120 3 11 23 0.44 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 10
No. of states in DFA: 620 (66 KB)
Total size of DFA: 298 KB (2154 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 57.31u 0.12s 57.43t Elapsed: 00:00:02
Total cpu time: 57.32u 0.12s 57.44t Elapsed: 00:00:02
Start: Sat May 11 09:30:01 2013 End: Sat May 11 09:30:03 2013