BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006993
(622 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225432918|ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic [Vitis vinifera]
gi|297737163|emb|CBI26364.3| unnamed protein product [Vitis vinifera]
Length = 902
Score = 880 bits (2273), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/599 (72%), Positives = 501/599 (83%), Gaps = 15/599 (2%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
RKTGGLVIWRSGT+VSLYRGVSYEVP VQLNKR+YK+NE SS S S++
Sbjct: 285 RKTGGLVIWRSGTSVSLYRGVSYEVP-VQLNKRVYKKNETSHSSFS-----------SIT 332
Query: 65 GNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLG 124
NS + +++KT+ + S NVHA+Q L E + D EVKYEDE++KLLDGLG
Sbjct: 333 PNSFAISSNKTSGNAPAVGSNQNVHASQATLNITDGENK-DTESEVKYEDEIDKLLDGLG 391
Query: 125 PRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHF 184
PRYTDWPGCDPLP+DAD+LPG + GYQPPFR+LPYGVRS+L KEAT L+RLARVLPPHF
Sbjct: 392 PRYTDWPGCDPLPIDADLLPGKIHGYQPPFRILPYGVRSSLGLKEATALRRLARVLPPHF 451
Query: 185 ALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDF 244
ALGRSRQL+GLA+AMIKLWE+SSIAK+ALKRGVQLTTSERM EDIKKLTGG LLSRNKDF
Sbjct: 452 ALGRSRQLEGLAMAMIKLWERSSIAKVALKRGVQLTTSERMAEDIKKLTGGVLLSRNKDF 511
Query: 245 LVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLK 304
LVFYRGKNFLS DVTEAL ERERLAK+LQDEEEQARLRAS + P++ E+ G+AGTL
Sbjct: 512 LVFYRGKNFLSSDVTEALLERERLAKALQDEEEQARLRASTLITPTVGITEQVGSAGTLG 571
Query: 305 ETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEE 364
ETL+A++RWGKRLDD K+ ++++AEV RHA LV+KLE++LA AERKL++AE ALSKVEE
Sbjct: 572 ETLEADARWGKRLDDHDKQKMLKKAEVARHANLVRKLERRLALAERKLMKAENALSKVEE 631
Query: 365 SLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI 424
LKPA R ADPESITDEERFMFRKLGLRMKAFLLLGRRGVF GTVENMHLHWKYRELVKI
Sbjct: 632 FLKPANRPADPESITDEERFMFRKLGLRMKAFLLLGRRGVFSGTVENMHLHWKYRELVKI 691
Query: 425 IVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKR 484
IVK KTFDQ KK ALALE+ESGGVLVSVDK+SKG+A+VV+RGKDYQRPSTLRPKNLLTKR
Sbjct: 692 IVKAKTFDQVKKTALALESESGGVLVSVDKVSKGFAIVVFRGKDYQRPSTLRPKNLLTKR 751
Query: 485 KALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATEDD 544
KALARSIELQR+EAL H++ L+ N +LRSEIEQM+ VK GDE+LYDKLDSAYATED+
Sbjct: 752 KALARSIELQRREALYNHISALQRNVEKLRSEIEQMDIVKDHGDEELYDKLDSAYATEDE 811
Query: 545 DSEDEGDEAYLEMYAGGNDNEDEIDNSTHNLEMESDFPYHAQDQESETE--LMDSESEA 601
+E+EGDEAYLE YA ND E E DNS HN +E++FPY Q +E ETE + D ESE
Sbjct: 812 HTEEEGDEAYLETYADENDGEHESDNSIHNHHIETNFPYDIQGEEFETEAAVQDEESET 870
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 361 KVEE-SLKPAERQADPE-SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKY 418
KVEE S++ R + E ++ + E R L +R K +G GV V+ + WK
Sbjct: 201 KVEEGSVRIKSRTSLAELTLPESELRRLRNLTMRTKNKTKIGGGGVTQAVVDMIREKWKT 260
Query: 419 RELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTL 475
E+VK+ + ++I LE ++GG+++ G ++ +YRG Y+ P L
Sbjct: 261 SEIVKLKCEGAAALNMRRIHEILERKTGGLVI----WRSGTSVSLYRGVSYEVPVQL 313
>gi|147852748|emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]
Length = 902
Score = 879 bits (2270), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/599 (72%), Positives = 501/599 (83%), Gaps = 15/599 (2%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
RKTGGLVIWRSGT+VSLYRGVSYEVP VQLNKR+YK+NE SS S S++
Sbjct: 285 RKTGGLVIWRSGTSVSLYRGVSYEVP-VQLNKRVYKKNETSHSSFS-----------SIT 332
Query: 65 GNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLG 124
NS + +++KT+ + S NVHA+Q L E + D EVKYEDE++KLLDGLG
Sbjct: 333 PNSFAISSNKTSGNAPAVGSNQNVHASQATLXITDGENK-DTESEVKYEDEIDKLLDGLG 391
Query: 125 PRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHF 184
PRYTDWP CDPLP+DAD+LPG + GYQPPFR+LPYGVRS+L KEAT L+RLARVLPPHF
Sbjct: 392 PRYTDWPXCDPLPIDADLLPGKIHGYQPPFRILPYGVRSSLGLKEATALRRLARVLPPHF 451
Query: 185 ALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDF 244
ALGRSRQL+GLA+AMIKLWE+SSIAK+ALKRGVQLTTSERM EDIKKLTGG LLSRNKDF
Sbjct: 452 ALGRSRQLEGLAMAMIKLWERSSIAKVALKRGVQLTTSERMAEDIKKLTGGVLLSRNKDF 511
Query: 245 LVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLK 304
LVFYRGKNFLS DVTEAL ERERLAK+LQDEEEQARLRAS + P++ E+ G+AGTL
Sbjct: 512 LVFYRGKNFLSSDVTEALLERERLAKALQDEEEQARLRASTLITPTVGITEQVGSAGTLG 571
Query: 305 ETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEE 364
ETL+A++RWGKRLDD K+ ++++AEV RHA LV+KLE++LA AERKL++AE ALSKVEE
Sbjct: 572 ETLEADARWGKRLDDHDKQKMLKKAEVARHANLVRKLERRLALAERKLMKAENALSKVEE 631
Query: 365 SLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI 424
LKPA R ADPESITDEERFMFRKLGLRMKAFLLLGRRGVF GTVENMHLHWKYRELVKI
Sbjct: 632 FLKPANRPADPESITDEERFMFRKLGLRMKAFLLLGRRGVFSGTVENMHLHWKYRELVKI 691
Query: 425 IVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKR 484
IVK KTFDQ KK ALALE+ESGGVLVSVDK+SKG+A+VV+RGKDYQRPSTLRPKNLLTKR
Sbjct: 692 IVKAKTFDQVKKTALALESESGGVLVSVDKVSKGFAIVVFRGKDYQRPSTLRPKNLLTKR 751
Query: 485 KALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATEDD 544
KALARSIELQR+EAL H++ L+ N +LRSEIEQM+ VK GDE+LYDKLDSAYATED+
Sbjct: 752 KALARSIELQRREALYNHISALQRNVEKLRSEIEQMDIVKDHGDEELYDKLDSAYATEDE 811
Query: 545 DSEDEGDEAYLEMYAGGNDNEDEIDNSTHNLEMESDFPYHAQDQESETE--LMDSESEA 601
+E+EGDEAYLE YA ND E E DNS HN +E++FPY QD+E ETE + D ESE
Sbjct: 812 HTEEEGDEAYLETYADENDGEHESDNSIHNHHIETNFPYDIQDEEFETEAAVQDEESET 870
Score = 39.3 bits (90), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 361 KVEE-SLKPAERQADPE-SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKY 418
KVEE S++ R + E ++ + E R L +R K +G GV V+ + WK
Sbjct: 201 KVEEGSVRIKSRTSLAELTLPESELRRLRNLTMRTKNKTKIGGGGVTQAVVDMIREKWKT 260
Query: 419 RELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTL 475
E+VK+ + ++I LE ++GG+++ G ++ +YRG Y+ P L
Sbjct: 261 SEIVKLKCEGAAALNMRRIHEILERKTGGLVI----WRSGTSVSLYRGVSYEVPVQL 313
>gi|224111046|ref|XP_002315729.1| predicted protein [Populus trichocarpa]
gi|222864769|gb|EEF01900.1| predicted protein [Populus trichocarpa]
Length = 894
Score = 811 bits (2096), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/599 (71%), Positives = 491/599 (81%), Gaps = 28/599 (4%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
KTGGLVIWRSG VSLYRGVSYE P+++ KRI+K+ E S
Sbjct: 278 KTGGLVIWRSGATVSLYRGVSYEDPALKWKKRIFKKKE-------------------TSS 318
Query: 66 NSLSAAADKTAQDPSNFDSYNNVHA----TQVNLETASEEQETDFVREVKYEDEVEKLLD 121
NSL AA T S N +HA T++N+E A++ +ET +VKYEDEV+KLLD
Sbjct: 319 NSLPAATSITIGSQSKNSPDNEIHAPRPKTEINVEAANQ-KETKTQTDVKYEDEVDKLLD 377
Query: 122 GLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLP 181
GLGPRYTDWPG DPLPVDADMLPG++PGYQPPFR+LPYGVR TL R+++T+L+RLARVLP
Sbjct: 378 GLGPRYTDWPGLDPLPVDADMLPGVIPGYQPPFRILPYGVRPTLGRQDSTSLRRLARVLP 437
Query: 182 PHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRN 241
PHFA+GRSRQLQGLAVAMIKLWEKSSI K+ALKRGVQLTTSERM EDIKKLTGG LLSRN
Sbjct: 438 PHFAVGRSRQLQGLAVAMIKLWEKSSIVKVALKRGVQLTTSERMAEDIKKLTGGLLLSRN 497
Query: 242 KDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAG 301
KDFLVFYRGK+FLSP+V+EAL ERERLAKSLQDEEEQARLRASA V+PS E +E+SG AG
Sbjct: 498 KDFLVFYRGKDFLSPEVSEALLERERLAKSLQDEEEQARLRASALVIPSDEIMEESGIAG 557
Query: 302 TLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSK 361
+L+ETLDA+++WGKRLDD HKE ++REAE+ RHA +V++LEKKLA A+RKL RAER L+K
Sbjct: 558 SLEETLDADAKWGKRLDDCHKEKIIREAEIVRHASIVRRLEKKLAFAQRKLRRAERTLNK 617
Query: 362 VEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYREL 421
VE LKP+ERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYREL
Sbjct: 618 VEGFLKPSERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYREL 677
Query: 422 VKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLL 481
VKII+K K+F+Q KKIALALEAESGGVLVSVDKISKGYA++VYRGKDYQRPS LRPKNLL
Sbjct: 678 VKIILKAKSFEQVKKIALALEAESGGVLVSVDKISKGYAIIVYRGKDYQRPSMLRPKNLL 737
Query: 482 TKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYAT 541
TKRKALARSIE+QR EAL HV+ LE ++RSEIEQM VK GDE+LYD+LDSAY T
Sbjct: 738 TKRKALARSIEIQRSEALQNHVSALEIKVEKIRSEIEQMGFVKDKGDEELYDRLDSAYLT 797
Query: 542 --EDDDSEDEGDEAYLEMYAGGN--DNEDEIDNSTHNLEMESDFPYHAQDQESETELMD 596
+ DDSEDEGDEAYLE Y N D +DE D++ HN ++++ + Q QESETE D
Sbjct: 798 DDDADDSEDEGDEAYLETYNSENDVDYDDETDSTVHNAHLDTNLLNNVQIQESETEPED 856
Score = 38.9 bits (89), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 386 FRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAES 445
R L K+ +G RGV V+ +H WK E+ ++ V+ K++ LE ++
Sbjct: 220 LRNLTYGTKSKTRVGGRGVTQEVVDAIHDKWKTSEIARVKVEGAPALNMKRMHEILENKT 279
Query: 446 GGVLVSVDKISKGYAMVVYRGKDYQRPS 473
GG+++ G + +YRG Y+ P+
Sbjct: 280 GGLVI----WRSGATVSLYRGVSYEDPA 303
>gi|255551945|ref|XP_002517017.1| conserved hypothetical protein [Ricinus communis]
gi|223543652|gb|EEF45180.1| conserved hypothetical protein [Ricinus communis]
Length = 773
Score = 811 bits (2095), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/604 (69%), Positives = 488/604 (80%), Gaps = 24/604 (3%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
RKTGGLVIWRSGT+VSLYRGVSYE PSVQLNK+I KRNEL +S+S AT I S
Sbjct: 170 RKTGGLVIWRSGTSVSLYRGVSYEDPSVQLNKQILKRNELSNNSLSTATG------IIRS 223
Query: 65 GNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLG 124
+ +A++D N H + E++E + EVKYEDEV+KLL+GLG
Sbjct: 224 PSKSAASSD-----------LNMPHLNSDSTAEGEEKKEIEMETEVKYEDEVDKLLEGLG 272
Query: 125 PRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHF 184
PRYTDW G DPLPVDADMLPGI+PGYQPPFR+LPYGVRS+L +KEAT+L+RLAR+LPPHF
Sbjct: 273 PRYTDWAGLDPLPVDADMLPGIIPGYQPPFRILPYGVRSSLGQKEATSLRRLARILPPHF 332
Query: 185 ALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDF 244
ALGRSRQLQGLA AMIKLWEKSSIAKI+LKRGVQLTTSERM EDIKKLTGG LLSRNKDF
Sbjct: 333 ALGRSRQLQGLADAMIKLWEKSSIAKISLKRGVQLTTSERMAEDIKKLTGGMLLSRNKDF 392
Query: 245 LVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLK 304
LVFYRGK+FLSP+VTEAL ERERLA+SLQD+EEQARLRASA + + ET+E+ GTAGTL+
Sbjct: 393 LVFYRGKDFLSPEVTEALVERERLAQSLQDKEEQARLRASALFVQTAETLEQPGTAGTLE 452
Query: 305 ETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEE 364
ETLDA++RWGK LD +H+E ++REAE+ RHA LV+KLE KLA AE+KL++AERALSKVE
Sbjct: 453 ETLDADARWGKCLDQNHREKIMREAEIARHANLVRKLESKLAFAEKKLMKAERALSKVEV 512
Query: 365 SLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI 424
LKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI
Sbjct: 513 FLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI 572
Query: 425 IVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKR 484
I+K K +Q KKIALALEAESGG+LVSVD++SKGYA++V+RGKDYQRPS LRP NLLTKR
Sbjct: 573 ILKAKNIEQVKKIALALEAESGGILVSVDRVSKGYAIIVFRGKDYQRPSKLRPGNLLTKR 632
Query: 485 KALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATEDD 544
KALARSIE+QR EALLKH++ L+ ++R EI QM VK GDE+LYD+LD+ Y T+DD
Sbjct: 633 KALARSIEIQRSEALLKHISALQKKVDKIRYEIAQMEKVKDQGDEELYDRLDATYPTDDD 692
Query: 545 DSEDEGDEAYLEMYAGGND----NEDEIDNSTHNLEMESDFPYHAQDQESETELMDSESE 600
D+E+E DEAYL Y D +DE H++ +E+ Y Q QESETE SE
Sbjct: 693 DTEEEEDEAYLGAYISKGDANSAADDETGGIVHSVRLETGNLYDVQHQESETE---SEVS 749
Query: 601 AYTV 604
Y +
Sbjct: 750 IYLI 753
Score = 39.7 bits (91), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 386 FRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAES 445
R L ++K+ + + GV V+++H WK E+V++ V+ +++ LE ++
Sbjct: 113 LRNLTYQIKSKVRVKGAGVTQEVVDSIHDRWKTSEIVRVKVEGAPALNMRRMHEILERKT 172
Query: 446 GGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALA 488
GG+++ G ++ +YRG Y+ PS K +L KR L+
Sbjct: 173 GGLVI----WRSGTSVSLYRGVSYEDPSVQLNKQIL-KRNELS 210
>gi|356576487|ref|XP_003556362.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 835
Score = 810 bits (2093), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/575 (69%), Positives = 470/575 (81%), Gaps = 23/575 (4%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
RKTGGLVIWRSG +VSLYRGVSYEVPSVQ NK+IY+++E S
Sbjct: 276 RKTGGLVIWRSGNSVSLYRGVSYEVPSVQQNKKIYRKSE-------------------NS 316
Query: 65 GNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLG 124
L + + +PS+ S + A LE+ ++E+E D++ +V YE EV+KLLDGLG
Sbjct: 317 SKLLPTPSYNSVGNPSDIASNSGTSAPLAKLESTNDEKERDYLPKVNYEHEVDKLLDGLG 376
Query: 125 PRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHF 184
PRYTDWPGCDPLPVDADMLP VPGYQPPFRVLP+GVR+TL +EAT L+R+AR LPPHF
Sbjct: 377 PRYTDWPGCDPLPVDADMLPVTVPGYQPPFRVLPFGVRATLGLREATALRRIARTLPPHF 436
Query: 185 ALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDF 244
ALGR+RQLQGLAVAMIKLWE SSIAK+ALKRGVQLTTSERM E+IKKLTGG LLSRNKDF
Sbjct: 437 ALGRNRQLQGLAVAMIKLWEISSIAKVALKRGVQLTTSERMAEEIKKLTGGILLSRNKDF 496
Query: 245 LVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLK 304
LVF+RGKNFLS DVT+AL ERER+AK +QDEEEQARLRAS+ ++P+ T E S AGTL
Sbjct: 497 LVFFRGKNFLSADVTQALLERERMAKVMQDEEEQARLRASSLLIPTNNTSELSAEAGTLG 556
Query: 305 ETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEE 364
ETLDA+++WGK LD+ HK+ ++RE E RHA LV+KLE+KL+ AERKL RAE+AL KVE
Sbjct: 557 ETLDADAKWGKTLDERHKQKIMREVEQLRHANLVKKLEQKLSFAERKLRRAEKALMKVES 616
Query: 365 SLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI 424
LKP+E +ADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGT+ENMHLHWKYRELVKI
Sbjct: 617 FLKPSEYKADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKI 676
Query: 425 IVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKR 484
IVK KTF+Q KKIALALEAESGGVLVSVDK+SKGY+++VYRGKDYQRPSTLRPKNLLTKR
Sbjct: 677 IVKAKTFEQVKKIALALEAESGGVLVSVDKVSKGYSVIVYRGKDYQRPSTLRPKNLLTKR 736
Query: 485 KALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATEDD 544
KALARSIELQR EAL+ H++TL+S GR+RSEIEQM VK GDE LYDKLDSAY ++D+
Sbjct: 737 KALARSIELQRHEALMNHISTLQSKVGRIRSEIEQMEKVKDKGDEALYDKLDSAYPSDDE 796
Query: 545 DSE----DEGDEAYLEMYAGGNDNEDEIDNSTHNL 575
+SE ++GDEAYL+ Y ND+E E + + N+
Sbjct: 797 NSEVEDGEQGDEAYLKTYNSENDSEIESEVESDNM 831
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 16/135 (11%)
Query: 349 ERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGT 408
ERK +R+ S E +L PES + +R + KL K +GR GV
Sbjct: 194 ERKSMRSRSKTSLAELTL--------PES--ELKRLL--KLTFEKKHKTRIGRSGVTQAV 241
Query: 409 VENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKD 468
V+ +H WK E+V++ + + K++ LE ++GG+++ G ++ +YRG
Sbjct: 242 VDKIHERWKTSEIVRLKFEGEAALNMKRMHEILERKTGGLVI----WRSGNSVSLYRGVS 297
Query: 469 YQRPSTLRPKNLLTK 483
Y+ PS + K + K
Sbjct: 298 YEVPSVQQNKKIYRK 312
>gi|449432614|ref|XP_004134094.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
gi|449504099|ref|XP_004162252.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 874
Score = 789 bits (2037), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/596 (68%), Positives = 472/596 (79%), Gaps = 34/596 (5%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSV-QLNKRIYKRNELPASSVSQATDKQIHKQISM 63
RKTGGLVIWRSGT++SLYRGVSYE+P Q NKRIYKRNE+ A +
Sbjct: 302 RKTGGLVIWRSGTSLSLYRGVSYELPEAPQFNKRIYKRNEITA--------------LPK 347
Query: 64 SGNSLSAAADKTAQDPSNFDSYNNVHATQVN-LETASE-----EQETDFVREVKYEDEVE 117
+G S A PS S+ NV+A Q ET+ E EQ T +V YEDEV
Sbjct: 348 TGASTIA--------PSESSSHRNVYALQQKRAETSIEGEHCSEQLTKV--QVNYEDEVN 397
Query: 118 KLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLA 177
KLLDGLGPRYTDWPG DPLPVDADMLPG+VP Y+PPFR+LPYGVRS++ KEAT L+RLA
Sbjct: 398 KLLDGLGPRYTDWPGLDPLPVDADMLPGVVPDYEPPFRILPYGVRSSIGVKEATALKRLA 457
Query: 178 RVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTL 237
R LPPHFALGR+RQLQGLA+AM KLWE+S IAKIALKRGVQLTTSERM E+IKKLTGG L
Sbjct: 458 RRLPPHFALGRNRQLQGLAIAMTKLWERSLIAKIALKRGVQLTTSERMAEEIKKLTGGML 517
Query: 238 LSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKS 297
LSRNKDFLVFYRGK+FLSP+VTEAL ERERLAKSLQD+EEQARL+ASAFV+P IE E+S
Sbjct: 518 LSRNKDFLVFYRGKSFLSPEVTEALLERERLAKSLQDKEEQARLKASAFVVP-IEKTEQS 576
Query: 298 GTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAER 357
GTAG+L+ETLDA++RWGK LDD HKEN++REAE RH LV+KLE+KLA AERKL++AER
Sbjct: 577 GTAGSLEETLDADARWGKALDDKHKENVMREAEQLRHTDLVRKLERKLAFAERKLVKAER 636
Query: 358 ALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWK 417
L+KVE + PA+RQA+P+SIT+EERFMFRKLGLRMKAFLLLGRR VFDGTVENMHLHWK
Sbjct: 637 TLAKVEAFMTPAKRQAEPDSITEEERFMFRKLGLRMKAFLLLGRREVFDGTVENMHLHWK 696
Query: 418 YRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRP 477
YRELVKI++K +FD K IAL LEAESGGVLVS+DK+SKGYA++VYRGKDY+RPS LRP
Sbjct: 697 YRELVKIMIKANSFDHVKNIALQLEAESGGVLVSIDKVSKGYAIIVYRGKDYKRPSLLRP 756
Query: 478 KNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDS 537
KNLLTKRKALARSIELQR EALLKH++ ++S G+L SEIEQM VK GDE LY+ LDS
Sbjct: 757 KNLLTKRKALARSIELQRHEALLKHISAMQSKVGKLNSEIEQMEKVKDQGDEVLYNTLDS 816
Query: 538 AYATEDDDSEDEGDEAYLEMYAGGNDNEDEIDNSTHNLEMESDFPYHAQDQESETE 593
AY T D+DSEDE + Y E Y +D EDE D + +E D Q QESE E
Sbjct: 817 AYPT-DNDSEDENSDTY-EAYDQDSDVEDEDDIMASDEYLEGDISNGIQVQESEVE 870
>gi|357441009|ref|XP_003590782.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355479830|gb|AES61033.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 838
Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/569 (68%), Positives = 460/569 (80%), Gaps = 23/569 (4%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
+KTGGLVIWRSG +VSLYRGVSY+ PS+Q NK++Y++NE S
Sbjct: 276 KKTGGLVIWRSGNSVSLYRGVSYKDPSIQQNKQLYRKNE-------------------KS 316
Query: 65 GNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLG 124
LSA +D +PS F + + + LE+ ++++E + ++ YEDEV+KLLDGLG
Sbjct: 317 LKFLSAPSDDFEVEPSEFTTDSETKTSLEKLESTNDQKEKVNLPKISYEDEVDKLLDGLG 376
Query: 125 PRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHF 184
PRYTDWPGC+PLPVDADMLP VPGYQPPFRVLP+GVR TL KEAT+L+R+AR LPPHF
Sbjct: 377 PRYTDWPGCEPLPVDADMLPPTVPGYQPPFRVLPFGVRPTLGFKEATSLRRIARGLPPHF 436
Query: 185 ALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDF 244
ALGR+RQLQGLA AMIKLWEKSSIAK+ALKRGVQLTTSERM E+IKKLTGG +LSRNKDF
Sbjct: 437 ALGRNRQLQGLAAAMIKLWEKSSIAKVALKRGVQLTTSERMAEEIKKLTGGIILSRNKDF 496
Query: 245 LVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLK 304
LVFYRGKNFLSPDVT+AL ERE++AKS+QDEEEQARLRAS+ +LP+I T E S AGTL
Sbjct: 497 LVFYRGKNFLSPDVTQALLEREKMAKSMQDEEEQARLRASSLILPAINTSELSAEAGTLG 556
Query: 305 ETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEE 364
ETLDA+++WGK LD+ H++ ++RE E RHA +V+KLE+KL+ AERK+ RAERAL KVE
Sbjct: 557 ETLDADAKWGKTLDECHEQKVMREVEQLRHANIVRKLEEKLSLAERKIRRAERALMKVEV 616
Query: 365 SLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI 424
SLKP+E +ADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGT+ENMHLHWKYRELVKI
Sbjct: 617 SLKPSETRADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKI 676
Query: 425 IVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKR 484
IVK F+ KKIALALEAESGGVLVSVDK+SKGY+++VYRGKDYQRPS LRPKNLLTKR
Sbjct: 677 IVKANNFEHVKKIALALEAESGGVLVSVDKVSKGYSILVYRGKDYQRPSMLRPKNLLTKR 736
Query: 485 KALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYAT--- 541
KALARSIELQR EAL H++TL+S +LRSEIEQ+ VK GDE LY++LDSAY+T
Sbjct: 737 KALARSIELQRHEALSSHISTLQSKVEKLRSEIEQIEKVKEEGDEALYNRLDSAYSTDDD 796
Query: 542 -EDDDSEDEGDEAYLEMYAGGNDNEDEID 569
+ + E+E EAYL+ ND+E E D
Sbjct: 797 NSEAEDEEEEVEAYLQSDNDENDSEVESD 825
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 388 KLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGG 447
KL K +G GV V+ +H WK E+V++ + K++ LE ++GG
Sbjct: 221 KLTFMKKHKTRIGGGGVTQAAVDKIHERWKTSEIVRLKFEGDAALNMKRMHEILEKKTGG 280
Query: 448 VLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTK 483
+++ G ++ +YRG Y+ PS + K L K
Sbjct: 281 LVI----WRSGNSVSLYRGVSYKDPSIQQNKQLYRK 312
>gi|297831030|ref|XP_002883397.1| hypothetical protein ARALYDRAFT_898801 [Arabidopsis lyrata subsp.
lyrata]
gi|297329237|gb|EFH59656.1| hypothetical protein ARALYDRAFT_898801 [Arabidopsis lyrata subsp.
lyrata]
Length = 873
Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/564 (65%), Positives = 454/564 (80%), Gaps = 30/564 (5%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
+KTGGLVIWRSGT++SLYRGVSYE+PS + NK+ +R E P SS+ + T +M
Sbjct: 284 KKTGGLVIWRSGTSISLYRGVSYELPSGKWNKQ--RREETPPSSLPETT--------TMV 333
Query: 65 GNSLSAAADKTAQDPSNFDSYNNVHATQV-NLETASEEQETDFVREVKYEDEVEKLLDGL 123
NS VH Q+ + T+ E+++ +V+YEDE+++LLDGL
Sbjct: 334 DNS-----------------DGKVHLPQLEQVTTSVEKKDQTSQPDVEYEDEIDELLDGL 376
Query: 124 GPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPH 183
GPR+ DWPG +PLPVDAD+LPG +PGY+PPFRVLPYGVRS+L KEAT L+RLAR +PPH
Sbjct: 377 GPRFMDWPGDNPLPVDADLLPGAIPGYEPPFRVLPYGVRSSLGPKEATALRRLARSIPPH 436
Query: 184 FALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKD 243
FALGRSRQLQGLA AM++LWEKS +AKIA+KRGVQ TTSERM ED+KKLTGG LLSRNKD
Sbjct: 437 FALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSERMAEDLKKLTGGILLSRNKD 496
Query: 244 FLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLR-ASAFVLPSIETIEKSGTAGT 302
FLVFYRGKNFLS +V +AL E+ER ++LQDEEEQARLR +SA ++P IE +K +AGT
Sbjct: 497 FLVFYRGKNFLSREVADALVEQERFVRTLQDEEEQARLRGSSALIVPCIEPPKKLVSAGT 556
Query: 303 LKETLDANSRWGKRLDDS-HKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSK 361
L ETLDA +WGK LDD H + + +E E+ RH LV+KLE+KLA AERKLL+AER L+K
Sbjct: 557 LGETLDATGKWGKNLDDDDHSDEVKQEVEILRHENLVRKLERKLAFAERKLLKAERGLAK 616
Query: 362 VEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYREL 421
VEE LKPAE++ DP+SITDEERFMFRKLGL+MKAFLLLGRRGVFDGTVENMHLHWKYREL
Sbjct: 617 VEECLKPAEQREDPDSITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYREL 676
Query: 422 VKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLL 481
VKIIVK KTFD KK+ALALEAESGG+LVS+DK++KGYA++VYRGKDY+RP+ LRPKNLL
Sbjct: 677 VKIIVKAKTFDGVKKVALALEAESGGILVSIDKVTKGYAIIVYRGKDYKRPTMLRPKNLL 736
Query: 482 TKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYAT 541
TKRKALARSIELQR+E LLKH++T+++ A +LR+EIEQM V GDE+LY+KLD AYA+
Sbjct: 737 TKRKALARSIELQRREGLLKHISTMQAKAEQLRAEIEQMEKVTDKGDEELYNKLDMAYAS 796
Query: 542 EDDDSEDEGDEAYLEMYAGGNDNE 565
D+++++E D+A+ E YA G+D E
Sbjct: 797 SDEETDEEEDDAFPETYAVGDDGE 820
>gi|9294196|dbj|BAB02098.1| unnamed protein product [Arabidopsis thaliana]
Length = 850
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/539 (65%), Positives = 431/539 (79%), Gaps = 25/539 (4%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
+KTGGLVIWRSGT++SLYRGVSYE+PS + NK+ +R E P +V + D+
Sbjct: 255 KKTGGLVIWRSGTSISLYRGVSYELPSGKWNKQ--RREETPPEAVIENHDET-------- 304
Query: 65 GNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLG 124
+ DK+ + VH Q+ ET S E++ V+YEDE+++LLD LG
Sbjct: 305 ----TTMVDKSDE---------KVHLPQLEQETTSVEKKDQTSPVVEYEDELDELLDDLG 351
Query: 125 PRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHF 184
PR+ DWPG +PLPVDAD+LPG +P Y+PPFRVLPYGVRS+L KEAT L+RLAR +PPHF
Sbjct: 352 PRFMDWPGDNPLPVDADLLPGAIPDYEPPFRVLPYGVRSSLGPKEATALRRLARSIPPHF 411
Query: 185 ALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDF 244
ALGRSRQLQGLA AM++LWEKS +AKIA+KRGVQ TTSERM ED+KKLTGG +LSRNKDF
Sbjct: 412 ALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSERMAEDLKKLTGGIMLSRNKDF 471
Query: 245 LVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLR-ASAFVLPSIETIEKSGTAGTL 303
LVFYRGKNFLS +V +AL E+ER ++LQDEEEQARLR +SA ++PS E K +AGTL
Sbjct: 472 LVFYRGKNFLSREVADALVEQERFVRTLQDEEEQARLRGSSALIVPSTEPANKLVSAGTL 531
Query: 304 KETLDANSRWGKRLDDS-HKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKV 362
ETLDA +WGK LDD H + + +E E+ RH LV+KLE+KLA AERKLL+AER L+KV
Sbjct: 532 GETLDATGKWGKNLDDDDHSDEVKQEVEILRHENLVRKLERKLAFAERKLLKAERGLAKV 591
Query: 363 EESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELV 422
E LKPAE++ DPESITDEERFMFRKLGL+MKAFLLLGRRGVFDGTVENMHLHWKYRELV
Sbjct: 592 EVCLKPAEQREDPESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELV 651
Query: 423 KIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLT 482
KIIVK KTFD KK+ALALEAESGG+LVS+DK++KGYA++VYRG+DY+RP+ LRPKNLLT
Sbjct: 652 KIIVKAKTFDGVKKVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLLT 711
Query: 483 KRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYAT 541
KRKALARSIELQR+E LLKH++T+++ A +LR+EIEQM V GDE+LY+KLD AYA+
Sbjct: 712 KRKALARSIELQRREGLLKHISTMQAKAKQLRAEIEQMEKVTDKGDEELYNKLDMAYAS 770
>gi|30686898|ref|NP_188947.2| CRM family member 3A [Arabidopsis thaliana]
gi|332643191|gb|AEE76712.1| CRM family member 3A [Arabidopsis thaliana]
Length = 881
Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/539 (65%), Positives = 431/539 (79%), Gaps = 25/539 (4%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
+KTGGLVIWRSGT++SLYRGVSYE+PS + NK+ +R E P +V + D+
Sbjct: 286 KKTGGLVIWRSGTSISLYRGVSYELPSGKWNKQ--RREETPPEAVIENHDET-------- 335
Query: 65 GNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLG 124
+ DK+ + VH Q+ ET S E++ V+YEDE+++LLD LG
Sbjct: 336 ----TTMVDKSDE---------KVHLPQLEQETTSVEKKDQTSPVVEYEDELDELLDDLG 382
Query: 125 PRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHF 184
PR+ DWPG +PLPVDAD+LPG +P Y+PPFRVLPYGVRS+L KEAT L+RLAR +PPHF
Sbjct: 383 PRFMDWPGDNPLPVDADLLPGAIPDYEPPFRVLPYGVRSSLGPKEATALRRLARSIPPHF 442
Query: 185 ALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDF 244
ALGRSRQLQGLA AM++LWEKS +AKIA+KRGVQ TTSERM ED+KKLTGG +LSRNKDF
Sbjct: 443 ALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSERMAEDLKKLTGGIMLSRNKDF 502
Query: 245 LVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLR-ASAFVLPSIETIEKSGTAGTL 303
LVFYRGKNFLS +V +AL E+ER ++LQDEEEQARLR +SA ++PS E K +AGTL
Sbjct: 503 LVFYRGKNFLSREVADALVEQERFVRTLQDEEEQARLRGSSALIVPSTEPANKLVSAGTL 562
Query: 304 KETLDANSRWGKRLDDS-HKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKV 362
ETLDA +WGK LDD H + + +E E+ RH LV+KLE+KLA AERKLL+AER L+KV
Sbjct: 563 GETLDATGKWGKNLDDDDHSDEVKQEVEILRHENLVRKLERKLAFAERKLLKAERGLAKV 622
Query: 363 EESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELV 422
E LKPAE++ DPESITDEERFMFRKLGL+MKAFLLLGRRGVFDGTVENMHLHWKYRELV
Sbjct: 623 EVCLKPAEQREDPESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELV 682
Query: 423 KIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLT 482
KIIVK KTFD KK+ALALEAESGG+LVS+DK++KGYA++VYRG+DY+RP+ LRPKNLLT
Sbjct: 683 KIIVKAKTFDGVKKVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLLT 742
Query: 483 KRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYAT 541
KRKALARSIELQR+E LLKH++T+++ A +LR+EIEQM V GDE+LY+KLD AYA+
Sbjct: 743 KRKALARSIELQRREGLLKHISTMQAKAKQLRAEIEQMEKVTDKGDEELYNKLDMAYAS 801
>gi|334186525|ref|NP_193187.3| CRM family member 3B [Arabidopsis thaliana]
gi|332658053|gb|AEE83453.1| CRM family member 3B [Arabidopsis thaliana]
Length = 907
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/647 (57%), Positives = 466/647 (72%), Gaps = 79/647 (12%)
Query: 5 RKTGGLVIWRSGTAVSLY--RGVSYEVPSVQLNKRIYKRNE-----LPASSVSQATD--- 54
RKTGGLVIWRSGT+++LY +G S S +NK++Y+R E LP S+V Q+
Sbjct: 287 RKTGGLVIWRSGTSIALYNYKGGSNRDGSGNMNKQVYRRAERLPSSLPTSTVDQSVQLVN 346
Query: 55 -KQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYE 113
Q+ K+ ++ GN D+T+ +EV+YE
Sbjct: 347 LPQLEKEPTVVGNK-----DRTSP------------------------------QEVEYE 371
Query: 114 DEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNL 173
DE+ +LL+GLGPRYTDW G PLPVDAD+LPGIVPGY+PPFR LPYGVRSTL KEAT+L
Sbjct: 372 DEINELLEGLGPRYTDWQGGYPLPVDADLLPGIVPGYEPPFRALPYGVRSTLGTKEATSL 431
Query: 174 QRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLT 233
+R+A VLPPHFALGRSRQLQGLA AM+KLW+KS IAK+ALKRGVQLTTSERM EDIK+LT
Sbjct: 432 RRIATVLPPHFALGRSRQLQGLATAMVKLWQKSLIAKVALKRGVQLTTSERMAEDIKRLT 491
Query: 234 GGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRAS--------- 284
GG LLSRNKDFLVFYRGK+FLS +V EAL E+E L ++LQDEEEQARLRAS
Sbjct: 492 GGMLLSRNKDFLVFYRGKSFLSLEVGEALMEKEMLVRTLQDEEEQARLRASSALVVPSIK 551
Query: 285 -------------------AFVLPSIETIEKSGTAGTLKETLDANSRWGKRLD-DSHKEN 324
A VLPS + + +AGTL ETLDA +WGK LD D H E
Sbjct: 552 ANQQLARTLQDKEEQARPSALVLPSTKANQNLVSAGTLGETLDATGKWGKNLDNDDHVEE 611
Query: 325 LVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERF 384
+ +E E R A LV+KLE+KLA AE+KLL+AERAL+KVEESLKPAE++ D E IT+EERF
Sbjct: 612 MKQEVEKVRSAKLVRKLERKLAFAEKKLLKAERALAKVEESLKPAEQRTDLEGITEEERF 671
Query: 385 MFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAE 444
MF+KLGL+MKAFLLLGRRGVFDGTVENMHLHWKYREL+KI+VK KT + A+K+A+ALEAE
Sbjct: 672 MFQKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELIKILVKAKTLEGAQKVAMALEAE 731
Query: 445 SGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVA 504
SGG+LVSVDKISKGYA++VYRGKDY+RP+TLRPKNLLTKRKALARS+ELQ++EAL+KH+
Sbjct: 732 SGGILVSVDKISKGYAVIVYRGKDYKRPTTLRPKNLLTKRKALARSLELQKREALIKHIE 791
Query: 505 TLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYAT--EDDDSEDEGDEAYLEMYAGGN 562
+++ + +LR+EIEQ+ VK GDE LYDKLD AY++ E ++++ E D+ YL+ Y
Sbjct: 792 AIQTRSEQLRAEIEQVELVKDKGDETLYDKLDMAYSSDEETEETDGEEDDVYLDTYEDEG 851
Query: 563 DNEDEIDNSTHNLEMESDFPYHAQDQESETELMDSESEAYTVHSTYC 609
++++E + E+D + + ES+T+ D+ + + T +T+
Sbjct: 852 EDDEEGGIQANGSLSETDVEFGS--DESDTDFGDNSASSTTPETTFV 896
>gi|297800788|ref|XP_002868278.1| hypothetical protein ARALYDRAFT_330061 [Arabidopsis lyrata subsp.
lyrata]
gi|297314114|gb|EFH44537.1| hypothetical protein ARALYDRAFT_330061 [Arabidopsis lyrata subsp.
lyrata]
Length = 919
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/657 (56%), Positives = 465/657 (70%), Gaps = 77/657 (11%)
Query: 5 RKTGGLVIWRSGTAVSLY--RGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQIS 62
RKTGGLVIWRSGT+++LY +G + S +NK+IY+R E SS+ T
Sbjct: 277 RKTGGLVIWRSGTSIALYNYKGGNNRDGSGNMNKQIYRRAETLQSSLPTNT--------- 327
Query: 63 MSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLE-TASEEQETDFVREVKYEDEVEKLLD 121
+ D++ Q VH Q+ E T ++ EV+YEDE+ +LL+
Sbjct: 328 -------STVDQSVQ---------LVHLPQLEKEPTVVGNKDRTSPHEVEYEDEINELLE 371
Query: 122 GLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLP 181
GLGPRYTDW G PLPVDAD+LPGIVP Y+PPFRVLPYGVRSTL KEAT+L+R+A VLP
Sbjct: 372 GLGPRYTDWQGGYPLPVDADLLPGIVPVYEPPFRVLPYGVRSTLGTKEATSLRRIATVLP 431
Query: 182 PHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKK---------- 231
PHFALGRSRQLQGLA AM+KLW+KS IAK+ALKRGVQLTTSERM EDIK
Sbjct: 432 PHFALGRSRQLQGLATAMVKLWQKSLIAKVALKRGVQLTTSERMAEDIKVIRIHIRVTFD 491
Query: 232 ---LTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRA-SAFV 287
LTGG LLSRNKDFLVFYRGK+FLSP+V EAL E+ERL ++LQDEEEQARLRA SA V
Sbjct: 492 CLILTGGMLLSRNKDFLVFYRGKSFLSPEVAEALMEKERLVRTLQDEEEQARLRASSALV 551
Query: 288 LPSIETIEKSG---------------------------TAGTLKETLDANSRWGKRLD-D 319
+PSI+ + +AGTL ETLDA +WGK LD D
Sbjct: 552 VPSIKANQNLARTLQDEEKQSRPSTLVVPSTKANQNLVSAGTLGETLDATGKWGKSLDND 611
Query: 320 SHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESIT 379
H E + +E E R A LV+KLE+KLA AE+KLL+AERAL+KVEESLKPAE++ D E IT
Sbjct: 612 DHVEEMKQEVERMRSAKLVRKLERKLAFAEKKLLKAERALAKVEESLKPAEQRTDLEGIT 671
Query: 380 DEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIAL 439
+EERFMF+KLGLRMKAFLLLGRRGVFDGTVENMHLHWKYREL+KI+VK K+ + AKK+A+
Sbjct: 672 EEERFMFQKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELIKILVKAKSLEGAKKVAM 731
Query: 440 ALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEAL 499
ALEAESGG+LVSVDKISKGYA++VYRGKDY+RP+TLRPKNLLTKRKALARS+ELQ++EAL
Sbjct: 732 ALEAESGGILVSVDKISKGYAVIVYRGKDYKRPTTLRPKNLLTKRKALARSLELQKREAL 791
Query: 500 LKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATEDDDSEDEGDEA--YLEM 557
+KH+ +++ + +LR+EIEQ+ VK GDE LYDKLD AY+++++ E +G+E YL+
Sbjct: 792 IKHIEAVQTRSEQLRAEIEQVELVKDKGDEALYDKLDMAYSSDEEIEETDGEEDDMYLDT 851
Query: 558 YAGGNDNEDEIDNSTHNLEMESDFPYHAQDQ-----ESETELMDSESEAYTVHSTYC 609
Y ++ +E + E+D + + D+ ES+TE D + + T +T+
Sbjct: 852 YEDEGEDGEEGEIQAKGSLSETDVGFGSDDELWDSDESDTEFGDDSASSTTPETTFV 908
>gi|162459980|ref|NP_001106061.1| CRM family member 3 [Zea mays]
gi|156789080|gb|ABU96081.1| CRM family member 3 [Zea mays]
Length = 842
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/585 (61%), Positives = 442/585 (75%), Gaps = 34/585 (5%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
RKTGGLVIWRSGT+VSLYRGV Y+ P + K+N S S A D I
Sbjct: 234 RKTGGLVIWRSGTSVSLYRGVDYDEPE---PTKKSKKN-----SQSLAMDFPI------- 278
Query: 65 GNSLSAAADKTAQDPSNF--DSYNNVHATQVNL-ETASEEQETDFVREVKYEDEVEKLLD 121
K + +PS ++ N+V + V L A++E+ E+KYEDE++KLLD
Sbjct: 279 ---------KGSSNPSLLPTETANSVRDSNVALVSNAAKEELVVQAPEIKYEDEIDKLLD 329
Query: 122 GLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLP 181
LGPRYTDWPG DPLPVDAD+LP +PGY+PPFRVLPYGVR +L+R++ TNL+RLAR LP
Sbjct: 330 ELGPRYTDWPGSDPLPVDADLLPANMPGYKPPFRVLPYGVRPSLSRRDTTNLRRLARGLP 389
Query: 182 PHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRN 241
PHFALGRSRQLQGLA AM+KLWEKSSIAKIALKRGVQLTTSERM EDIKKLTGG +LSRN
Sbjct: 390 PHFALGRSRQLQGLANAMVKLWEKSSIAKIALKRGVQLTTSERMAEDIKKLTGGVMLSRN 449
Query: 242 KDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAG 301
+F+VFYRGK+FLS ++ E L ERERLAKSLQDEEE R AS F S ET + AG
Sbjct: 450 NEFIVFYRGKDFLSSELAEVLLERERLAKSLQDEEEARRKAASYFS--SAETYAQPTVAG 507
Query: 302 TLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSK 361
TL ETL+ANS++G + D++H + + R E RHA LV+KLE KL+ A++K+ +AER L K
Sbjct: 508 TLGETLEANSKYGTKHDENHADKMARTIEAARHADLVRKLEWKLSLAQKKMEKAERVLGK 567
Query: 362 VEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYREL 421
VE +L+P E PE+ITDEERFMFRKLGLRMKAFLLLGRRGVFDGT+ENMHLHWKYREL
Sbjct: 568 VETALRPTEDSRPPETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYREL 627
Query: 422 VKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLL 481
VKI+VK K+F K+IAL+LEAESGG+LVSVDK+SKGYA+VV+RGK+Y+RPS+LRP+NLL
Sbjct: 628 VKILVKAKSFADVKRIALSLEAESGGILVSVDKVSKGYAIVVFRGKNYRRPSSLRPRNLL 687
Query: 482 TKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYAT 541
+KRKALARSIELQR +AL +H A L RL++E+ QM VK GDE+LY KLD+AY++
Sbjct: 688 SKRKALARSIELQRHQALSRHFAKLNRKVERLKAELVQMEDVKEQGDEELYAKLDAAYSS 747
Query: 542 EDDDSEDEGDEAYLEMY----AGGNDNEDEIDNSTHNLEMESDFP 582
+D+D EDE DEAYL+ + AG ++D D+ T + E+D+P
Sbjct: 748 DDEDMEDEDDEAYLKRFDNEVAGATADDDGSDDYTSAAD-EADYP 791
>gi|414591664|tpg|DAA42235.1| TPA: CRM family member 3 [Zea mays]
Length = 1523
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/585 (61%), Positives = 442/585 (75%), Gaps = 34/585 (5%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
RKTGGLVIWRSGT+VSLYRGV Y+ P + K+N S S A D I
Sbjct: 915 RKTGGLVIWRSGTSVSLYRGVDYDEPE---PTKKSKKN-----SQSLAMDFPI------- 959
Query: 65 GNSLSAAADKTAQDPSNF--DSYNNVHATQVNL-ETASEEQETDFVREVKYEDEVEKLLD 121
K + +PS ++ N+V + V L A++E+ E+KYEDE++KLLD
Sbjct: 960 ---------KGSSNPSLLPTETANSVRDSNVALVSNAAKEELVVQAPEIKYEDEIDKLLD 1010
Query: 122 GLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLP 181
LGPRYTDWPG DPLPVDAD+LP +PGY+PPFRVLPYGVR +L+R++ TNL+RLAR LP
Sbjct: 1011 ELGPRYTDWPGSDPLPVDADLLPANMPGYKPPFRVLPYGVRPSLSRRDTTNLRRLARGLP 1070
Query: 182 PHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRN 241
PHFALGRSRQLQGLA AM+KLWEKSSIAKIALKRGVQLTTSERM EDIKKLTGG +LSRN
Sbjct: 1071 PHFALGRSRQLQGLANAMVKLWEKSSIAKIALKRGVQLTTSERMAEDIKKLTGGVMLSRN 1130
Query: 242 KDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAG 301
+F+VFYRGK+FLS ++ E L ERERLAKSLQDEEE R AS F S ET + AG
Sbjct: 1131 NEFIVFYRGKDFLSSELAEVLLERERLAKSLQDEEEARRKAASYFS--SAETYAQPTVAG 1188
Query: 302 TLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSK 361
TL ETL+ANS++G + D++H + + R E RHA LV+KLE KL+ A++K+ +AER L K
Sbjct: 1189 TLGETLEANSKYGTKHDENHADKMARTIEAARHADLVRKLEWKLSLAQKKMEKAERVLGK 1248
Query: 362 VEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYREL 421
VE +L+P E PE+ITDEERFMFRKLGLRMKAFLLLGRRGVFDGT+ENMHLHWKYREL
Sbjct: 1249 VETALRPTEDSRPPETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYREL 1308
Query: 422 VKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLL 481
VKI+VK K+F K+IAL+LEAESGG+LVSVDK+SKGYA+VV+RGK+Y+RPS+LRP+NLL
Sbjct: 1309 VKILVKAKSFADVKRIALSLEAESGGILVSVDKVSKGYAIVVFRGKNYRRPSSLRPRNLL 1368
Query: 482 TKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYAT 541
+KRKALARSIELQR +AL +H A L RL++E+ QM VK GDE+LY KLD+AY++
Sbjct: 1369 SKRKALARSIELQRHQALSRHFAKLNRKVERLKAELVQMEDVKEQGDEELYAKLDAAYSS 1428
Query: 542 EDDDSEDEGDEAYLEMY----AGGNDNEDEIDNSTHNLEMESDFP 582
+D+D EDE DEAYL+ + AG ++D D+ T + E+D+P
Sbjct: 1429 DDEDMEDEDDEAYLKRFDNEVAGATADDDGSDDYTSAAD-EADYP 1472
>gi|326492672|dbj|BAJ90192.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 879
Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/606 (58%), Positives = 441/606 (72%), Gaps = 31/606 (5%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
RKTGGLVIWRSGT+VSLYRGV+Y+VP + + T + + + S+
Sbjct: 250 RKTGGLVIWRSGTSVSLYRGVAYDVPDT--------------TKGTNRTWQDVGMKSSIK 295
Query: 65 GNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQET-DFVREVKYEDEVEKLLDGL 123
G + ++ + N++ + L + +E++E + V E+KYE+E+ +LLD L
Sbjct: 296 GPPIPSSIPN--------EKVNSMQGSNGGLVSNTEKEEAIETVPEIKYEEEIGRLLDEL 347
Query: 124 GPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPH 183
GPRY+DWPG +PLPVDAD+LP +PGY+PPFRVLPYGVR +L+RK+ TNL+RLAR LPPH
Sbjct: 348 GPRYSDWPGSNPLPVDADLLPATIPGYKPPFRVLPYGVRRSLSRKDTTNLRRLARGLPPH 407
Query: 184 FALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKD 243
FALGRSRQLQGLA AM+KLWE+SSIAK+ALKRGVQLTTSERM EDIKKLTGG +LSRN D
Sbjct: 408 FALGRSRQLQGLAAAMVKLWERSSIAKVALKRGVQLTTSERMAEDIKKLTGGVMLSRNND 467
Query: 244 FLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTL 303
F+VFYRGK+FLS ++ EAL ERER KSLQDEE QARL A S E +S AGTL
Sbjct: 468 FVVFYRGKDFLSTELAEALLERERSMKSLQDEE-QARLNAKLSFTSSTEAFIESTVAGTL 526
Query: 304 KETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVE 363
ETL+ANS++G L D+H + + R E +HA LV+KLE KLA AE+++ +AER L KVE
Sbjct: 527 GETLEANSKYGNELVDNHVDKMTRTVEAAKHADLVRKLEWKLALAEKRIAKAERVLGKVE 586
Query: 364 ESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVK 423
+LKP E PE+ITDEERFMFRKLGLRMKAFLLLGRRGVFDGT+ENMHLHWKYRELVK
Sbjct: 587 TALKPTEDTKPPETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVK 646
Query: 424 IIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTK 483
I+VK K+F K+ AL+LE ESGGVLVSVDK+SKGYA+VV+RGKDY+RPS LRP+NLL+K
Sbjct: 647 ILVKAKSFADVKRTALSLEVESGGVLVSVDKVSKGYAIVVFRGKDYKRPSMLRPRNLLSK 706
Query: 484 RKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATED 543
RKALARSIELQR EAL +H+ L +LRSE+ QM VK GDE+LY KLDSAY++ED
Sbjct: 707 RKALARSIELQRMEALGRHIEKLNRRVNQLRSELVQMEDVKDQGDEELYAKLDSAYSSED 766
Query: 544 DDSEDEGDEAYLEMY-------AGGNDNEDEIDNSTHNLEMESDFPYHAQDQESETELMD 596
+D EDE D+AY+ + ++NE I++S + + D D + E E+ D
Sbjct: 767 EDVEDEDDDAYIRSFDNPIARATADDENETAIEDSESSYSNDYDSAEDNGDCDEEDEVND 826
Query: 597 SESEAY 602
E Y
Sbjct: 827 VEYSDY 832
>gi|2244807|emb|CAB10230.1| hypothetical protein [Arabidopsis thaliana]
gi|7268157|emb|CAB78493.1| hypothetical protein [Arabidopsis thaliana]
Length = 918
Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/672 (54%), Positives = 466/672 (69%), Gaps = 104/672 (15%)
Query: 5 RKTGGLVIWRSGTAVSLY--RGVSYEVPSVQLNKRIYKRNE-----LPASSVSQATD--- 54
RKTGGLVIWRSGT+++LY +G S S +NK++Y+R E LP S+V Q+
Sbjct: 273 RKTGGLVIWRSGTSIALYNYKGGSNRDGSGNMNKQVYRRAERLPSSLPTSTVDQSVQLVN 332
Query: 55 -KQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYE 113
Q+ K+ ++ GN D+T+ +EV+YE
Sbjct: 333 LPQLEKEPTVVGNK-----DRTSP------------------------------QEVEYE 357
Query: 114 DEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNL 173
DE+ +LL+GLGPRYTDW G PLPVDAD+LPGIVPGY+PPFR LPYGVRSTL KEAT+L
Sbjct: 358 DEINELLEGLGPRYTDWQGGYPLPVDADLLPGIVPGYEPPFRALPYGVRSTLGTKEATSL 417
Query: 174 QRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIK--- 230
+R+A VLPPHFALGRSRQLQGLA AM+KLW+KS IAK+ALKRGVQLTTSERM EDIK
Sbjct: 418 RRIATVLPPHFALGRSRQLQGLATAMVKLWQKSLIAKVALKRGVQLTTSERMAEDIKVIR 477
Query: 231 ----------------------KLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERL 268
+LTGG LLSRNKDFLVFYRGK+FLS +V EAL E+E L
Sbjct: 478 FHSRVTFNCFYINVDIIRINDKRLTGGMLLSRNKDFLVFYRGKSFLSLEVGEALMEKEML 537
Query: 269 AKSLQDEEEQARLRAS----------------------------AFVLPSIETIEKSGTA 300
++LQDEEEQARLRAS A VLPS + + +A
Sbjct: 538 VRTLQDEEEQARLRASSALVVPSIKANQQLARTLQDKEEQARPSALVLPSTKANQNLVSA 597
Query: 301 GTLKETLDANSRWGKRLD-DSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERAL 359
GTL ETLDA +WGK LD D H E + +E E R A LV+KLE+KLA AE+KLL+AERAL
Sbjct: 598 GTLGETLDATGKWGKNLDNDDHVEEMKQEVEKVRSAKLVRKLERKLAFAEKKLLKAERAL 657
Query: 360 SKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYR 419
+KVEESLKPAE++ D E IT+EERFMF+KLGL+MKAFLLLGRRGVFDGTVENMHLHWKYR
Sbjct: 658 AKVEESLKPAEQRTDLEGITEEERFMFQKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYR 717
Query: 420 ELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKN 479
EL+KI+VK KT + A+K+A+ALEAESGG+LVSVDKISKGYA++VYRGKDY+RP+TLRPKN
Sbjct: 718 ELIKILVKAKTLEGAQKVAMALEAESGGILVSVDKISKGYAVIVYRGKDYKRPTTLRPKN 777
Query: 480 LLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAY 539
LLTKRKALARS+ELQ++EAL+KH+ +++ + +LR+EIEQ+ VK GDE LYDKLD AY
Sbjct: 778 LLTKRKALARSLELQKREALIKHIEAIQTRSEQLRAEIEQVELVKDKGDETLYDKLDMAY 837
Query: 540 AT--EDDDSEDEGDEAYLEMYAGGNDNEDEIDNSTHNLEMESDFPYHAQDQESETELMDS 597
++ E ++++ E D+ YL+ Y ++++E + E+D + + ES+T+ D+
Sbjct: 838 SSDEETEETDGEEDDVYLDTYEDEGEDDEEGGIQANGSLSETDVEFGS--DESDTDFGDN 895
Query: 598 ESEAYTVHSTYC 609
+ + T +T+
Sbjct: 896 SASSTTPETTFV 907
>gi|242071513|ref|XP_002451033.1| hypothetical protein SORBIDRAFT_05g022980 [Sorghum bicolor]
gi|241936876|gb|EES10021.1| hypothetical protein SORBIDRAFT_05g022980 [Sorghum bicolor]
Length = 895
Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/582 (59%), Positives = 437/582 (75%), Gaps = 31/582 (5%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
RKTGGLVIWRSGT+VSLYRGV Y+ P E S + + I S
Sbjct: 239 RKTGGLVIWRSGTSVSLYRGVDYDEP------------ETTKGSKKNSQSLSMKSPIKGS 286
Query: 65 GNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLG 124
N +K +S + + V+ A +E+ E+KYEDE++KLLD LG
Sbjct: 287 PNPPLPPTEKA-------NSVQDRNGPLVS--NAGKEEIVVQAPEIKYEDEIDKLLDELG 337
Query: 125 PRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHF 184
PRYTDWPG DPLPVDAD+LP VPGY+PPFRVLPYGVR +L+R + TNL+RLAR LPPHF
Sbjct: 338 PRYTDWPGSDPLPVDADLLPATVPGYKPPFRVLPYGVRPSLSRMDTTNLRRLARGLPPHF 397
Query: 185 ALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDF 244
ALGRSRQLQGLA AM+KLWEKSSIAK+ALKRGVQLTTSERM EDIKKLTGG +LSRN +F
Sbjct: 398 ALGRSRQLQGLANAMVKLWEKSSIAKVALKRGVQLTTSERMAEDIKKLTGGVMLSRNNEF 457
Query: 245 LVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLK 304
+VFYRGK+FLS ++ E L ERERLAKSLQDEEE AR +A+++ S E + AGTL
Sbjct: 458 IVFYRGKDFLSSELAEVLLERERLAKSLQDEEE-ARRKAASYFSSSAEKYVQPTVAGTLG 516
Query: 305 ETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEE 364
ETL+ANS++G +LD++H++ + R E RHA LV+KLE KL+ A++K+ +AER L KVE
Sbjct: 517 ETLEANSKYGTKLDENHEDKMARTVEAARHADLVRKLEWKLSLAQKKMEKAERVLGKVET 576
Query: 365 SLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI 424
+L+P E + PE+ITDEERFMFRKLGLRMKAFLLLGRRGVFDGT+ENMHLHWKYRELVKI
Sbjct: 577 ALRPTE-DSRPETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKI 635
Query: 425 IVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKR 484
+VK K+F K+IAL+LEAESGG+LVSVDK+SKGYA+VV+RGK+Y+RPS+LRP+NLL+KR
Sbjct: 636 LVKAKSFADVKRIALSLEAESGGILVSVDKVSKGYAIVVFRGKNYRRPSSLRPRNLLSKR 695
Query: 485 KALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYAT-ED 543
KALARSIELQR +AL +H A L +L++E+ QM VK GDE+LY KLD+AY++ E+
Sbjct: 696 KALARSIELQRHQALSRHFAKLNRKVAQLKAELVQMEDVKDQGDEELYAKLDAAYSSDEE 755
Query: 544 DDSEDEGDEAYLEMYAGGNDNE---DEIDNSTHNLEMESDFP 582
D +++ DEAYLE + DNE ++ + +++ E+D+P
Sbjct: 756 DMEDEDDDEAYLERF----DNEVAGATAEDGSESVDDEADYP 793
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 386 FRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAES 445
R +R+K+ +G GV VE + WK E+V++ V + LE ++
Sbjct: 182 LRHAAIRIKSRTKVGGAGVTREIVEKIKEKWKTEEVVRVKVSGTPALNMRLFHEILERKT 241
Query: 446 GGVLVSVDKISKGYAMVVYRGKDYQRPSTLR 476
GG+++ G ++ +YRG DY P T +
Sbjct: 242 GGLVI----WRSGTSVSLYRGVDYDEPETTK 268
>gi|77551737|gb|ABA94534.1| CRS1/YhbY domain containing protein, expressed [Oryza sativa
Japonica Group]
Length = 886
Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/572 (60%), Positives = 423/572 (73%), Gaps = 38/572 (6%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
RKTGGLVIWRSGT+VSLYRGV+Y++P P S+
Sbjct: 241 RKTGGLVIWRSGTSVSLYRGVAYDIPE-------------PTKGTSK------------- 274
Query: 65 GNSLSAAADKTAQDPSNFDSYNN--VHATQVN----LETASEEQETDFVREVKYEDEVEK 118
N+ + + ++P N V+ Q N + A ++ + V E+KYEDE++K
Sbjct: 275 -NTQTLGMKSSIKEPPGHSLLPNEKVNEMQDNNGALVSNAEKDTLVEPVPEIKYEDEIDK 333
Query: 119 LLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLAR 178
LLD LGPRY DWP DP PVDAD+LP VPGY+PPFRVLPYGVR +L+R++ TNL+RLAR
Sbjct: 334 LLDELGPRYDDWPRPDPSPVDADLLPATVPGYKPPFRVLPYGVRPSLSRRDTTNLRRLAR 393
Query: 179 VLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLL 238
LPPHFALGRSRQLQGLA AM+KLWEKSSIAKIALKRGVQLTTSERM EDIKKLTGG +L
Sbjct: 394 GLPPHFALGRSRQLQGLAAAMVKLWEKSSIAKIALKRGVQLTTSERMAEDIKKLTGGVML 453
Query: 239 SRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSG 298
SRN DF+VFYRGK+FLSP++ E L ERER AKSLQD EEQARL A++ E +
Sbjct: 454 SRNNDFMVFYRGKDFLSPELAEKLLERERWAKSLQD-EEQARLNAASSFSSRTEAPVEPT 512
Query: 299 TAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERA 358
AGTL ETL+ANS++G +LD++++ + R E RHA LV+KLE KL A++K+ +AER
Sbjct: 513 VAGTLGETLEANSKYGNKLDENYENKMTRTVEAARHADLVRKLEWKLQLAQKKIEKAERV 572
Query: 359 LSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKY 418
L KVE +LKP E PE+ITDEERFMFRKLGLRMKAFLLLGRRGVFDGT+ENMHLHWKY
Sbjct: 573 LGKVETALKPTEGIQPPETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKY 632
Query: 419 RELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPK 478
RELVKI+VK K+F KKIAL+LEAESGG+LVSVDK+SKGYA+VV+RGKDY RPS LRP+
Sbjct: 633 RELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKVSKGYAIVVFRGKDYARPSKLRPR 692
Query: 479 NLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSA 538
NLL+KRKALARSIE+QR+EAL H+ATL +L++E+ QM VK GD +LY KLDSA
Sbjct: 693 NLLSKRKALARSIEIQRREALSHHIATLNRRVKKLKAELLQMEGVKEEGDVELYAKLDSA 752
Query: 539 YATEDDDSEDEGDEAYLEMYAGGNDNEDEIDN 570
Y+++++D EDE DEAYL + DN + N
Sbjct: 753 YSSDEEDVEDEDDEAYLRSF----DNSVAVQN 780
Score = 42.4 bits (98), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 6/153 (3%)
Query: 386 FRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAES 445
R G+R+K+ + +G GV VE + W+ E+V+I V + LE ++
Sbjct: 184 LRHAGMRLKSRIKVGGAGVTREIVERIRDRWRNDEVVRIKVTGTPALNMRLFHEILERKT 243
Query: 446 GGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKH--V 503
GG+++ G ++ +YRG Y P + + T+ + SI+ +LL + V
Sbjct: 244 GGLVI----WRSGTSVSLYRGVAYDIPEPTKGTSKNTQTLGMKSSIKEPPGHSLLPNEKV 299
Query: 504 ATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLD 536
++ N G L S E+ V+ + + D++D
Sbjct: 300 NEMQDNNGALVSNAEKDTLVEPVPEIKYEDEID 332
>gi|357156286|ref|XP_003577404.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 881
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/565 (60%), Positives = 423/565 (74%), Gaps = 24/565 (4%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
RKTGGLVIWRSGT+VSLYRGV+Y+VP + RN QA + I
Sbjct: 235 RKTGGLVIWRSGTSVSLYRGVAYDVPETT---KGTNRN-------WQALGMKSSINIPPM 284
Query: 65 GNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLG 124
+SL QD + A N ETA + V E+KYE+E+++LLD LG
Sbjct: 285 PSSLPNEKVNGMQD-----RVGALVAVTENEETA------ETVPEIKYEEEIDRLLDELG 333
Query: 125 PRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHF 184
PRY+DWPG +PLPVDAD+LP VPGY+PPFRVLPYGVR +L+RK+ TNL+RL R LPPHF
Sbjct: 334 PRYSDWPGSNPLPVDADLLPATVPGYKPPFRVLPYGVRRSLSRKDTTNLRRLGRGLPPHF 393
Query: 185 ALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDF 244
ALGRSRQLQGLA AM+KLWE+SSIAKIALKRGVQLTTSERM ED+KKLTGG +LSRN DF
Sbjct: 394 ALGRSRQLQGLAAAMVKLWERSSIAKIALKRGVQLTTSERMAEDLKKLTGGVMLSRNNDF 453
Query: 245 LVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLK 304
+VFYRGK+FLS ++ E L ERER KSLQDEE QARL + S E + AGTL+
Sbjct: 454 VVFYRGKDFLSSELAEVLLERERSMKSLQDEE-QARLDRTPSFASSTEAFIEPSVAGTLE 512
Query: 305 ETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEE 364
ETL+ANS++G ++D++H + + + E +HA +V+KLE KL+ AE+++ +AER L KVE
Sbjct: 513 ETLEANSKYGNKVDENHMDKMTKTVEAAKHADVVRKLEWKLSLAEKRIAKAERVLGKVET 572
Query: 365 SLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI 424
+LKP+E E+IT+EERFMFRKLGLRMKAFLLLGRRGVFDGT+ENMHLHWKYRELVKI
Sbjct: 573 ALKPSEDTNPHETITEEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKI 632
Query: 425 IVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKR 484
+VKVK+F + K+IAL+LE ESGG+LVSVDK+SKGYA+VV+RGKDY+RPS LRP+NLL+KR
Sbjct: 633 LVKVKSFTEVKRIALSLEVESGGILVSVDKVSKGYAIVVFRGKDYRRPSMLRPRNLLSKR 692
Query: 485 KALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATEDD 544
KALARSIE+QR +AL +H+ L +LRSE+ Q+ K GD +LY KLDSAY++ED+
Sbjct: 693 KALARSIEIQRMQALNRHIGKLNRRVNQLRSELVQIEGAKDQGDVELYAKLDSAYSSEDE 752
Query: 545 DSEDEGDEAYLEMY--AGGNDNEDE 567
D EDE DEAYL + A G D D+
Sbjct: 753 DVEDEDDEAYLRSFDSAVGRDTTDD 777
>gi|222616258|gb|EEE52390.1| hypothetical protein OsJ_34482 [Oryza sativa Japonica Group]
Length = 560
Score = 615 bits (1586), Expect = e-173, Method: Compositional matrix adjust.
Identities = 315/502 (62%), Positives = 377/502 (75%), Gaps = 34/502 (6%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
RKTGGLVIWRSGT+VSLYRGV+Y++P P S+
Sbjct: 87 RKTGGLVIWRSGTSVSLYRGVAYDIPE-------------PTKGTSK------------- 120
Query: 65 GNSLSAAADKTAQDPSNFDSYNN--VHATQVN----LETASEEQETDFVREVKYEDEVEK 118
N+ + + ++P N V+ Q N + A ++ + V E+KYEDE++K
Sbjct: 121 -NTQTLGMKSSIKEPPGHSLLPNEKVNEMQDNNGALVSNAEKDTLVEPVPEIKYEDEIDK 179
Query: 119 LLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLAR 178
LLD LGPRY DWP DP PVDAD+LP VPGY+PPFRVLPYGVR +L+R++ TNL+RLAR
Sbjct: 180 LLDELGPRYDDWPRPDPSPVDADLLPATVPGYKPPFRVLPYGVRPSLSRRDTTNLRRLAR 239
Query: 179 VLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLL 238
LPPHFALGRSRQLQGLA AM+KLWEKSSIAKIALKRGVQLTTSERM EDIKKLTGG +L
Sbjct: 240 GLPPHFALGRSRQLQGLAAAMVKLWEKSSIAKIALKRGVQLTTSERMAEDIKKLTGGVML 299
Query: 239 SRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSG 298
SRN DF+VFYRGK+FLSP++ E L ERER AKSLQD EEQARL A++ E +
Sbjct: 300 SRNNDFMVFYRGKDFLSPELAEKLLERERWAKSLQD-EEQARLNAASSFSSRTEAPVEPT 358
Query: 299 TAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERA 358
AGTL ETL+ANS++G +LD++++ + R E RHA LV+KLE KL A++K+ +AER
Sbjct: 359 VAGTLGETLEANSKYGNKLDENYENKMTRTVEAARHADLVRKLEWKLQLAQKKIEKAERV 418
Query: 359 LSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKY 418
L KVE +LKP E PE+ITDEERFMFRKLGLRMKAFLLLGRRGVFDGT+ENMHLHWKY
Sbjct: 419 LGKVETALKPTEGIQPPETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKY 478
Query: 419 RELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPK 478
RELVKI+VK K+F KKIAL+LEAESGG+LVSVDK+SKGYA+VV+RGKDY RPS LRP+
Sbjct: 479 RELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKVSKGYAIVVFRGKDYARPSKLRPR 538
Query: 479 NLLTKRKALARSIELQRQEALL 500
NLL+KRKALARSIE+QR+E L
Sbjct: 539 NLLSKRKALARSIEIQRREVLF 560
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 6/153 (3%)
Query: 386 FRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAES 445
R G+R+K+ + +G GV VE + W+ E+V+I V + LE ++
Sbjct: 30 LRHAGMRLKSRIKVGGAGVTREIVERIRDRWRNDEVVRIKVTGTPALNMRLFHEILERKT 89
Query: 446 GGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKH--V 503
GG+++ G ++ +YRG Y P + + T+ + SI+ +LL + V
Sbjct: 90 GGLVI----WRSGTSVSLYRGVAYDIPEPTKGTSKNTQTLGMKSSIKEPPGHSLLPNEKV 145
Query: 504 ATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLD 536
++ N G L S E+ V+ + + D++D
Sbjct: 146 NEMQDNNGALVSNAEKDTLVEPVPEIKYEDEID 178
>gi|297738658|emb|CBI27903.3| unnamed protein product [Vitis vinifera]
Length = 881
Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust.
Identities = 307/571 (53%), Positives = 396/571 (69%), Gaps = 23/571 (4%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
+TGGLVIWR+G++V LYRG++Y++ VQ + +R+ + S SQ I + I +
Sbjct: 330 RTGGLVIWRTGSSVVLYRGMAYKLHCVQSYIK-QERDNVNISEYSQDAANVIIQDIGV-- 386
Query: 66 NSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGP 125
+ + D + + L+ SEE+ D E+ LLD LGP
Sbjct: 387 KDIVKTTESVISDSARY------------LKDLSEEELMDL-------SELNHLLDELGP 427
Query: 126 RYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFA 185
R+ DW G +PLPVDAD+LP +V Y+PPFR+LPYG+R L +E T ++RLAR +PPHFA
Sbjct: 428 RFKDWSGREPLPVDADLLPSVVHEYKPPFRLLPYGMRHCLRNREMTFIRRLARTMPPHFA 487
Query: 186 LGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFL 245
LGRSR+LQGLA+AM+KLWE+S+IAKIA+KRGVQ T ++RM E++K LTGGTL+SRNKD++
Sbjct: 488 LGRSRELQGLAMAMVKLWERSAIAKIAIKRGVQNTCNDRMAEELKNLTGGTLVSRNKDYI 547
Query: 246 VFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKE 305
VFYRG +FL P V EAL+ER +L QDEEEQAR RASA + + + AGTL E
Sbjct: 548 VFYRGNDFLPPHVMEALKERRKLRDLQQDEEEQARHRASALIDSKARSAKGPLVAGTLAE 607
Query: 306 TLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEES 365
TL A SRWG + ++R++ + RHA LV+ + KKLA A+ KL + E+AL KV+E
Sbjct: 608 TLAATSRWGSEPSEEDVGKMIRDSALARHASLVRYVGKKLAHAKAKLKKTEKALRKVQED 667
Query: 366 LKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKII 425
L+PAE D E+++DEERF+FRK+GL MK FLLLG RG+FDGTVENMHLHWKYRELVKII
Sbjct: 668 LEPAELPMDLETLSDEERFLFRKIGLSMKPFLLLGTRGIFDGTVENMHLHWKYRELVKII 727
Query: 426 VKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRK 485
VK K F Q K IA++LEAESGGVLVSVD+ KGYA++VYRGK+YQRP LRPKNLLTKR+
Sbjct: 728 VKGKNFAQVKHIAISLEAESGGVLVSVDRTPKGYAIIVYRGKNYQRPHALRPKNLLTKRQ 787
Query: 486 ALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATEDDD 545
ALARSIELQR EAL H++ LE L+S E+M + G D+ Y +LD Y+T++D
Sbjct: 788 ALARSIELQRHEALKHHISDLEERIKLLKSLPEEMKTGNGIDDKAFYSRLDGTYSTDEDM 847
Query: 546 SEDEGDEAYLEMYAGGNDNEDEIDNSTHNLE 576
EDEG+EAYLE+Y G D I N LE
Sbjct: 848 EEDEGEEAYLEIY-GSEDKGSNIQNKELLLE 877
Score = 43.1 bits (100), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 124/314 (39%), Gaps = 27/314 (8%)
Query: 169 EATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVED 228
E L+ +A + +G + Q L A+ + W K + K+ + G +R E
Sbjct: 268 ELRRLKNIALRMLERIKVGAAGVTQSLVDAIHEKWRKDEVVKLKFE-GPSSCNMKRTHEI 326
Query: 229 IKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEAL-QERERLAKSLQDEEEQARLRASAFV 287
++ TGG ++ R +V YRG + V + QER+ + S ++ +A V
Sbjct: 327 LETRTGGLVIWRTGSSVVLYRGMAYKLHCVQSYIKQERDNVNISEYSQD-------AANV 379
Query: 288 LPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLA- 346
+ I+ G +K T S + L D +E L+ +E+ +L+ +L +
Sbjct: 380 I-----IQDIGVKDIVKTTESVISDSARYLKDLSEEELMDLSELN---HLLDELGPRFKD 431
Query: 347 -RAERKLLRAERALSKVEESLKPAER---QADPESITDEERFMFRKLGLRMKAFLLLGRR 402
L L V KP R + + E R+L M LGR
Sbjct: 432 WSGREPLPVDADLLPSVVHEYKPPFRLLPYGMRHCLRNREMTFIRRLARTMPPHFALGRS 491
Query: 403 GVFDGTVENMHLHWKYRELVKIIVKVKTFDQAK-KIALALEAESGGVLVSVDKISKGYAM 461
G M W+ + KI +K + ++A L+ +GG LVS + K Y +
Sbjct: 492 RELQGLAMAMVKLWERSAIAKIAIKRGVQNTCNDRMAEELKNLTGGTLVSRN---KDY-I 547
Query: 462 VVYRGKDYQRPSTL 475
V YRG D+ P +
Sbjct: 548 VFYRGNDFLPPHVM 561
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 12/118 (10%)
Query: 361 KVEESLKPAER--------QADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENM 412
K E L+P ER + + + E + + LRM + +G GV V+ +
Sbjct: 239 KRREGLQPVERDGWGRRNTRMAERMVPEHELRRLKNIALRMLERIKVGAAGVTQSLVDAI 298
Query: 413 HLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQ 470
H W+ E+VK+ + + K+ LE +GG+++ G ++V+YRG Y+
Sbjct: 299 HEKWRKDEVVKLKFEGPSSCNMKRTHEILETRTGGLVI----WRTGSSVVLYRGMAYK 352
>gi|359484307|ref|XP_002279505.2| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 884
Score = 573 bits (1477), Expect = e-160, Method: Compositional matrix adjust.
Identities = 307/571 (53%), Positives = 396/571 (69%), Gaps = 23/571 (4%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
+TGGLVIWR+G++V LYRG++Y++ VQ + +R+ + S SQ I + I +
Sbjct: 333 RTGGLVIWRTGSSVVLYRGMAYKLHCVQSYIK-QERDNVNISEYSQDAANVIIQDIGV-- 389
Query: 66 NSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGP 125
+ + D + + L+ SEE+ D E+ LLD LGP
Sbjct: 390 KDIVKTTESVISDSARY------------LKDLSEEELMDL-------SELNHLLDELGP 430
Query: 126 RYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFA 185
R+ DW G +PLPVDAD+LP +V Y+PPFR+LPYG+R L +E T ++RLAR +PPHFA
Sbjct: 431 RFKDWSGREPLPVDADLLPSVVHEYKPPFRLLPYGMRHCLRNREMTFIRRLARTMPPHFA 490
Query: 186 LGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFL 245
LGRSR+LQGLA+AM+KLWE+S+IAKIA+KRGVQ T ++RM E++K LTGGTL+SRNKD++
Sbjct: 491 LGRSRELQGLAMAMVKLWERSAIAKIAIKRGVQNTCNDRMAEELKNLTGGTLVSRNKDYI 550
Query: 246 VFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKE 305
VFYRG +FL P V EAL+ER +L QDEEEQAR RASA + + + AGTL E
Sbjct: 551 VFYRGNDFLPPHVMEALKERRKLRDLQQDEEEQARHRASALIDSKARSAKGPLVAGTLAE 610
Query: 306 TLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEES 365
TL A SRWG + ++R++ + RHA LV+ + KKLA A+ KL + E+AL KV+E
Sbjct: 611 TLAATSRWGSEPSEEDVGKMIRDSALARHASLVRYVGKKLAHAKAKLKKTEKALRKVQED 670
Query: 366 LKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKII 425
L+PAE D E+++DEERF+FRK+GL MK FLLLG RG+FDGTVENMHLHWKYRELVKII
Sbjct: 671 LEPAELPMDLETLSDEERFLFRKIGLSMKPFLLLGTRGIFDGTVENMHLHWKYRELVKII 730
Query: 426 VKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRK 485
VK K F Q K IA++LEAESGGVLVSVD+ KGYA++VYRGK+YQRP LRPKNLLTKR+
Sbjct: 731 VKGKNFAQVKHIAISLEAESGGVLVSVDRTPKGYAIIVYRGKNYQRPHALRPKNLLTKRQ 790
Query: 486 ALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATEDDD 545
ALARSIELQR EAL H++ LE L+S E+M + G D+ Y +LD Y+T++D
Sbjct: 791 ALARSIELQRHEALKHHISDLEERIKLLKSLPEEMKTGNGIDDKAFYSRLDGTYSTDEDM 850
Query: 546 SEDEGDEAYLEMYAGGNDNEDEIDNSTHNLE 576
EDEG+EAYLE+Y G D I N LE
Sbjct: 851 EEDEGEEAYLEIY-GSEDKGSNIQNKELLLE 880
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 123/314 (39%), Gaps = 27/314 (8%)
Query: 169 EATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVED 228
E L+ +A + +G + Q L A+ + W K + K+ + G +R E
Sbjct: 271 ELRRLKNIALRMLERIKVGAAGVTQSLVDAIHEKWRKDEVVKLKFE-GPSSCNMKRTHEI 329
Query: 229 IKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEAL-QERERLAKSLQDEEEQARLRASAFV 287
++ TGG ++ R +V YRG + V + QER+ + S ++ +A V
Sbjct: 330 LETRTGGLVIWRTGSSVVLYRGMAYKLHCVQSYIKQERDNVNISEYSQD-------AANV 382
Query: 288 LPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLA- 346
+ I+ G +K T S + L D +E L+ +E+ +L+ +L +
Sbjct: 383 I-----IQDIGVKDIVKTTESVISDSARYLKDLSEEELMDLSELN---HLLDELGPRFKD 434
Query: 347 -RAERKLLRAERALSKVEESLKPAER---QADPESITDEERFMFRKLGLRMKAFLLLGRR 402
L L V KP R + + E R+L M LGR
Sbjct: 435 WSGREPLPVDADLLPSVVHEYKPPFRLLPYGMRHCLRNREMTFIRRLARTMPPHFALGRS 494
Query: 403 GVFDGTVENMHLHWKYRELVKIIVKVKTFDQAK-KIALALEAESGGVLVSVDKISKGYAM 461
G M W+ + KI +K + ++A L+ +GG LVS +K +
Sbjct: 495 RELQGLAMAMVKLWERSAIAKIAIKRGVQNTCNDRMAEELKNLTGGTLVSRNK----DYI 550
Query: 462 VVYRGKDYQRPSTL 475
V YRG D+ P +
Sbjct: 551 VFYRGNDFLPPHVM 564
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 361 KVEESLKPAERQA--------DPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENM 412
K E L+P ER + + E + + LRM + +G GV V+ +
Sbjct: 242 KRREGLQPVERDGWGRRNTRMAERMVPEHELRRLKNIALRMLERIKVGAAGVTQSLVDAI 301
Query: 413 HLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQ 470
H W+ E+VK+ + + K+ LE +GG+++ G ++V+YRG Y+
Sbjct: 302 HEKWRKDEVVKLKFEGPSSCNMKRTHEILETRTGGLVI----WRTGSSVVLYRGMAYK 355
>gi|224091282|ref|XP_002309217.1| predicted protein [Populus trichocarpa]
gi|222855193|gb|EEE92740.1| predicted protein [Populus trichocarpa]
Length = 977
Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust.
Identities = 278/535 (51%), Positives = 372/535 (69%), Gaps = 25/535 (4%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
+TGGL+IWRSG++V +YRG +Y+ VQ Y + V Q ++ + S +G
Sbjct: 430 RTGGLIIWRSGSSVVMYRGTTYKFQCVQ----SYTKQNEAGMDVLQYAEEATNSATSSAG 485
Query: 66 -NSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLG 124
L+ + D + + L+ S+E+ DF E+ LLD LG
Sbjct: 486 MKDLARTMESIIPDAAKY------------LKDLSQEELMDF-------SELNHLLDELG 526
Query: 125 PRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHF 184
PRY DW G +PLPVDAD+LP +VPGY+ P R+LPYGV+ L+ K TN +RLAR PPHF
Sbjct: 527 PRYKDWCGREPLPVDADLLPAVVPGYKSPLRLLPYGVKPCLSNKNTTNFRRLARTTPPHF 586
Query: 185 ALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDF 244
LGR+R+LQGLA AM+KLWE+S+IAKIA+KRGVQ T +E M E++K+LTGGTLLSRNK++
Sbjct: 587 VLGRNRELQGLANAMVKLWERSAIAKIAIKRGVQYTRNEIMAEELKRLTGGTLLSRNKEY 646
Query: 245 LVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLK 304
+VFYRG +FL P + E L+ER +LA QDEE+QAR SAF+ S++T + AGTL
Sbjct: 647 IVFYRGNDFLPPVINETLKERRKLAFLYQDEEDQARQMTSAFIGSSVKTTKGPLVAGTLV 706
Query: 305 ETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEE 364
ET+ A SRWG + E ++R++ + RHA LV+ LE KLA+A+ KL ++E+ L+KV+E
Sbjct: 707 ETVAAISRWGNQPSSEDVEEMIRDSALARHASLVKHLENKLAQAKGKLKKSEKDLAKVQE 766
Query: 365 SLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI 424
+L+P E D E+I+DEERF+FRK+GL MK +L LGRRGVFDGT+ENMHLHWKYRELVKI
Sbjct: 767 NLEPTELPTDLETISDEERFLFRKIGLSMKPYLFLGRRGVFDGTIENMHLHWKYRELVKI 826
Query: 425 IVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKR 484
IV+ K Q K IA++LEAESGGVLVSVD+ +KGYA++VYRGK+Y RP +RP+NLLT+R
Sbjct: 827 IVERKGIAQVKHIAISLEAESGGVLVSVDRTTKGYAIIVYRGKNYMRPQAMRPENLLTRR 886
Query: 485 KALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGD-EQLYDKLDSA 538
+ALARS+ELQR EAL H+ L+ + SE+E+M + K + + LY K D A
Sbjct: 887 QALARSVELQRYEALKHHITDLQERIELVTSELEEMEADKKSEVYKALYSKFDDA 941
Score = 42.4 bits (98), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 386 FRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAES 445
R + LRM + +G G+ V+ +H WK E+VK+ + K+ LE+ +
Sbjct: 372 LRNVALRMLERIKVGATGITQDLVDAIHEKWKLDEVVKLKFEWPLSCNMKRTHEILESRT 431
Query: 446 GGVLVSVDKISKGYAMVVYRGKDYQ 470
GG+++ G ++V+YRG Y+
Sbjct: 432 GGLII----WRSGSSVVMYRGTTYK 452
>gi|115478793|ref|NP_001062990.1| Os09g0363100 [Oryza sativa Japonica Group]
gi|48716728|dbj|BAD23409.1| putative CRS1 [Oryza sativa Japonica Group]
gi|50726191|dbj|BAD33710.1| putative CRS1 [Oryza sativa Japonica Group]
gi|113631223|dbj|BAF24904.1| Os09g0363100 [Oryza sativa Japonica Group]
gi|125591023|gb|EAZ31373.1| hypothetical protein OsJ_15500 [Oryza sativa Japonica Group]
Length = 947
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 276/553 (49%), Positives = 382/553 (69%), Gaps = 28/553 (5%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
+TGG+VIWRSG +V LYRG++Y + VQ S +Q T+ K++S
Sbjct: 407 RTGGIVIWRSGRSVVLYRGMNYNLRCVQ--------------SYTQTTEVNFDKRVS--S 450
Query: 66 NSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGP 125
NS+ + S D N A VN +SE+ F +++ LD LGP
Sbjct: 451 NSVEPIHVEHKFQKSGADGLNR-SAYIVN---SSEKPTETF--------DIDSFLDQLGP 498
Query: 126 RYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFA 185
RY DW G P+PVDAD+LPG+VPGY+ PFR+LPY V+STL KE T L+RLAR PHFA
Sbjct: 499 RYKDWSGRGPIPVDADLLPGVVPGYKTPFRLLPYMVKSTLRNKEMTALRRLARQTAPHFA 558
Query: 186 LGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFL 245
LGR+R+ QGLA A++KLWEKSSIAKIA+KRGV T ++RM E+I+KLTGG LLSRNK+++
Sbjct: 559 LGRNREHQGLATAIVKLWEKSSIAKIAIKRGVPNTCNDRMAEEIRKLTGGVLLSRNKEYI 618
Query: 246 VFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKE 305
VFYRG +F++P V + L E++ A + QDEEE ARL+ASA + + + AGTL E
Sbjct: 619 VFYRGNDFITPKVRQVLVEKQEQAITWQDEEELARLKASASISVKPKVFKNPPVAGTLAE 678
Query: 306 TLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEES 365
T +A SRWG ++ ++ + +H L++ L++KL A+ K+++AE+AL+KV+E
Sbjct: 679 TREAKSRWGDSINAELRKKEKNHMILTKHTSLLRNLKRKLILAKTKVIKAEKALAKVQEF 738
Query: 366 LKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKII 425
L PAE D E++TDEERF+ R++GL+MKAFL+LGRR VFDGTV+NMHLHWK+RELVK++
Sbjct: 739 LSPAELPTDLETVTDEERFLLRRIGLKMKAFLMLGRREVFDGTVQNMHLHWKHRELVKVL 798
Query: 426 VKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRK 485
VK K+F Q K IA++LEAESGGVL+SVDK +KGYA+++YRGK+Y+ P L+P+NLL++RK
Sbjct: 799 VKGKSFPQVKHIAISLEAESGGVLISVDKTTKGYAIILYRGKNYKTPQILKPRNLLSRRK 858
Query: 486 ALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATEDDD 545
ALARSIELQR+E L H++ L +L+S++ +M D +L +++ + +DD
Sbjct: 859 ALARSIELQRREGLNHHISNLRDKIWKLKSQLVRMQVAGEKPDAELLQTVEADLSKDDDK 918
Query: 546 SEDEGDEAYLEMY 558
EDEG+EAYL+ Y
Sbjct: 919 IEDEGEEAYLQTY 931
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 377 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKK 436
+I + E R + LRMK + +G GV VE++H W+ E+VK+ + K+
Sbjct: 340 TIPEHELRRLRDVALRMKERMRVGPGGVTQLIVESIHQKWRVEEVVKLRFEGPPSLNMKR 399
Query: 437 IALALEAESGGVLVSVDKISKGYAMVVYRGKDY 469
LE +GG+++ G ++V+YRG +Y
Sbjct: 400 THDILEERTGGIVI----WRSGRSVVLYRGMNY 428
>gi|242044486|ref|XP_002460114.1| hypothetical protein SORBIDRAFT_02g022940 [Sorghum bicolor]
gi|241923491|gb|EER96635.1| hypothetical protein SORBIDRAFT_02g022940 [Sorghum bicolor]
Length = 962
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 281/568 (49%), Positives = 396/568 (69%), Gaps = 30/568 (5%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
+TGG+VIWRSG +V LYRG++Y + VQ S +++ + K++ +
Sbjct: 419 RTGGVVIWRSGRSVVLYRGMNYNLQCVQ--------------SYAKSIETDSGKEVDDAS 464
Query: 66 NSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGP 125
+++S+ QD + +LE++ ET F +++ LD LGP
Sbjct: 465 SAVSSHGGHNLQDSREAGAKRLTSTENFSLESS----ET-F--------DIDNFLDQLGP 511
Query: 126 RYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFA 185
RY DW G P+PVDAD+LPG+V GY+PPFRVLPY ++STL KE T L+RL+R PHFA
Sbjct: 512 RYRDWSGRGPVPVDADLLPGVVHGYKPPFRVLPYKIKSTLRDKEMTTLRRLSRQTAPHFA 571
Query: 186 LGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFL 245
LGR+R+ QGLA AM+KLWEKS+IAKIA+KRGV T ++RM E+IKKLTGG LLSRNK+++
Sbjct: 572 LGRNREHQGLAAAMVKLWEKSAIAKIAIKRGVPNTCNDRMAEEIKKLTGGVLLSRNKEYI 631
Query: 246 VFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKE 305
VFYRG +F++P V + L E++ A + QDEEE ARL+ASA ++ + I+ AGTL E
Sbjct: 632 VFYRGNDFIAPKVRQVLVEKQEQAITQQDEEELARLKASASIITVPKGIKGPLVAGTLTE 691
Query: 306 TLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEES 365
T +A SRWG L+D +E ++ + +H L++ L++KL A+ K+ +AERAL+KV+E
Sbjct: 692 TTEAKSRWGMSLNDKQREEEMKRLSLLKHTSLLKNLKRKLILAKTKVAKAERALAKVQEF 751
Query: 366 LKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKII 425
L PAE D E++TDEERF+FR++GL+M+AFL+LGRR VFDGTV+NMHLHWK+RELVKII
Sbjct: 752 LSPAELPTDLETVTDEERFLFRRIGLKMRAFLMLGRREVFDGTVQNMHLHWKHRELVKII 811
Query: 426 VKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRK 485
V+ K+F Q K IA++LEAES GVL+S+DK SKGYA++ YRGK+Y+RP ++P+NLLT+R+
Sbjct: 812 VRGKSFAQVKHIAISLEAESEGVLISLDKTSKGYAIIFYRGKNYRRPQIMKPRNLLTRRQ 871
Query: 486 ALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYD-KLDSAYATEDD 544
ALARSIELQR+EAL H+++L+ +L+S++ Q D +L D + +DD
Sbjct: 872 ALARSIELQRREALKHHISSLQGKIWKLQSQLVQTKVASEKQDLKLLQTVEDDLSSDDDD 931
Query: 545 DSEDEGDEAYLEMYAGGN--DNEDEIDN 570
D ED+G+EAYL+ Y+ + D ED+ +N
Sbjct: 932 DVEDDGEEAYLQTYSSADEEDVEDDANN 959
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 377 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKK 436
+I + E R LRMK + +G GV VE++H WK E+VK+ + K+
Sbjct: 352 TIPEPELRRLRDTALRMKERIKVGPGGVTQDIVESIHRKWKVDEVVKMRFEGPPSLNMKR 411
Query: 437 IALALEAESGGVLVSVDKISKGYAMVVYRGKDY 469
LE +GGV++ G ++V+YRG +Y
Sbjct: 412 THDLLEDRTGGVVI----WRSGRSVVLYRGMNY 440
>gi|414885161|tpg|DAA61175.1| TPA: hypothetical protein ZEAMMB73_652631 [Zea mays]
Length = 964
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 276/554 (49%), Positives = 388/554 (70%), Gaps = 27/554 (4%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
+TGG+VIWRSG +V LYRG++Y VQ + + + VS A + S G
Sbjct: 423 RTGGVVIWRSGRSVVLYRGMNYNFQCVQSYAKFIEIDS--GKGVSDANSAVL----SHDG 476
Query: 66 NSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGP 125
++L A S D ++ +T +F E +++ LD LGP
Sbjct: 477 HNLQA---------SRADGMKSLTST------------GNFSLESSETFDIDNFLDQLGP 515
Query: 126 RYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFA 185
RY DW G P+PVDAD+LPG+V GY+PPFRVLPY ++STL KE T L+RLAR PHFA
Sbjct: 516 RYKDWSGRGPIPVDADLLPGVVHGYKPPFRVLPYKIKSTLRDKEMTTLRRLARQTAPHFA 575
Query: 186 LGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFL 245
LGR+R+ QGLA AM+KLWEKS+IAKIA+KRG+ T ++RM E+IKKLTGG LLSRNK+F+
Sbjct: 576 LGRNREHQGLAAAMVKLWEKSAIAKIAIKRGIPNTCNDRMAEEIKKLTGGVLLSRNKEFI 635
Query: 246 VFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKE 305
VFYRG +F++P V + L E++ A + QDEEE ARL+ASA ++ + I+ AGTL E
Sbjct: 636 VFYRGNDFIAPKVRQVLVEKQEQAITQQDEEELARLKASASIITIPKDIKGPLVAGTLAE 695
Query: 306 TLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEES 365
T +A SRWGK ++D +E ++ + +H L++ L++KL A+ K+ +AE+AL+KV+E
Sbjct: 696 TTEAKSRWGKSVNDKQREEEMKHLSLLKHTSLLKNLKRKLILAKTKVAKAEKALAKVQEF 755
Query: 366 LKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKII 425
L PAE D E++TDEERF+FR++GL+M+AFL+LGRR VFDGTV+NMHLHWK+RELVKI+
Sbjct: 756 LTPAELPTDLETVTDEERFLFRRIGLKMRAFLMLGRREVFDGTVQNMHLHWKHRELVKIV 815
Query: 426 VKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRK 485
V+ K+F QAK IA++LEAES GVL+S+DK +KGY ++ YRGK+Y+RP ++P+NLLT+R+
Sbjct: 816 VRGKSFAQAKHIAISLEAESEGVLISLDKTTKGYVIIFYRGKNYRRPQIMKPRNLLTRRQ 875
Query: 486 ALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATEDDD 545
ALARSIELQR+EAL H+++L+ +L+S++ Q D +L ++ +++ DDD
Sbjct: 876 ALARSIELQRREALKHHISSLQGKISKLQSQLVQTKVASEKHDLKLLQTVEDDFSSSDDD 935
Query: 546 SEDEGDEAYLEMYA 559
ED+G+EAYL+ Y+
Sbjct: 936 VEDDGEEAYLQTYS 949
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 377 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKK 436
SI + E R LRMK + +G GV VE++H WK E+VK+ + K+
Sbjct: 356 SIPEPELRRLRDTALRMKERIKVGPGGVTQDIVESIHRKWKVDEVVKMRFEGPPSLNMKR 415
Query: 437 IALALEAESGGVLVSVDKISKGYAMVVYRGKDY 469
LE +GGV++ G ++V+YRG +Y
Sbjct: 416 THDLLEDRTGGVVI----WRSGRSVVLYRGMNY 444
>gi|255546121|ref|XP_002514120.1| conserved hypothetical protein [Ricinus communis]
gi|223546576|gb|EEF48074.1| conserved hypothetical protein [Ricinus communis]
Length = 930
Score = 520 bits (1338), Expect = e-144, Method: Compositional matrix adjust.
Identities = 276/553 (49%), Positives = 371/553 (67%), Gaps = 29/553 (5%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
+TGGLVIWRSG++V LYRG+SY++ V + K++E ++ + + +++
Sbjct: 392 RTGGLVIWRSGSSVVLYRGISYKLHCV---RSFSKQDEAGKEILAHPEEVTSNATLNIGV 448
Query: 66 NSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGP 125
+ D + + L+ S E+ TDF E+ + LD LGP
Sbjct: 449 KHFIGTTESYIPDRAKY------------LKDLSREELTDFT-------ELNQFLDELGP 489
Query: 126 RYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFA 185
R+ DW G +PLPVDAD+L + PGY+PPFR+LPYGVR L KE T +RLAR +PPHFA
Sbjct: 490 RFEDWCGREPLPVDADLLLAVDPGYKPPFRLLPYGVRHCLTDKEMTIFRRLARTVPPHFA 549
Query: 186 LGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFL 245
LGR+RQLQGLA A++KLWE+S+I KIA+KRGVQ T +ERM E++K LTGG LLSRNK+++
Sbjct: 550 LGRNRQLQGLAKAIVKLWERSAIVKIAIKRGVQNTRNERMAEELKVLTGGILLSRNKEYI 609
Query: 246 VFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKE 305
VFYRG +FL P + + L+ER++L QDEEEQAR A A V S +T + AGTL E
Sbjct: 610 VFYRGNDFLPPAIVKTLKERKKLTYLKQDEEEQARQMALASVESSAKTSKVPLVAGTLAE 669
Query: 306 TLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEES 365
T+ A S W + + ++REA + + A LV+ LE KLA A+ KL +AE+AL+KV E
Sbjct: 670 TVAATSHWRDQRGSPDIDEMLREAVLAKRASLVKHLENKLALAKGKLRKAEKALAKVHEH 729
Query: 366 LKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKII 425
L P+ D E+I+DEERF+FRK+GL MK +L LG+RGV+DGT+ENMHLHWKYRELVK+I
Sbjct: 730 LDPSGLPTDLETISDEERFLFRKIGLSMKPYLFLGKRGVYDGTIENMHLHWKYRELVKVI 789
Query: 426 VKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRK 485
V+ K+F Q K IA++LEAESGGVLVS+++ +KGYA++VYRGK+Y P +RPKNLLTKR+
Sbjct: 790 VRGKSFAQVKHIAISLEAESGGVLVSIERTTKGYAIIVYRGKNYLHPEVMRPKNLLTKRQ 849
Query: 486 ALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATEDDD 545
AL RSIELQR+EAL H++ L+ L+ E+E M S G E DK+ S
Sbjct: 850 ALVRSIELQRREALKHHISDLQERIELLKLELEDMES----GKEIDVDKMSSRLDDSSIS 905
Query: 546 S---EDEGDEAYL 555
E+ G+EAYL
Sbjct: 906 DSDVEEGGEEAYL 918
>gi|356564786|ref|XP_003550629.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 794
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 268/547 (48%), Positives = 373/547 (68%), Gaps = 30/547 (5%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRI--YKRNELPAS-SVSQATDKQIHKQIS 62
K GG+VIWRSG+++ LYRG++Y++P ++ K++ K N + S V +D Q
Sbjct: 267 KIGGIVIWRSGSSIVLYRGMAYKLPCIENYKKVNLAKENAVDHSLHVGNGSDGQ------ 320
Query: 63 MSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDG 122
S N A+ Q+ + + L+ SEE+ + ++ LLD
Sbjct: 321 ASVNETVGTAESVIQESAEY------------LKDMSEEELMEMC-------DLNHLLDE 361
Query: 123 LGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPP 182
LGPR+ DW G PLPVDAD+LP +VPGY+ PFR+LPY +R L KE TN +RLAR P
Sbjct: 362 LGPRFKDWTGRQPLPVDADLLPAVVPGYKTPFRLLPYRIRPCLTNKEMTNFRRLARTTAP 421
Query: 183 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNK 242
HFALGR+R+LQGLA AM+KLWE S+IAKIA+KRGV T ++RM E+++KLTGGTLLSRNK
Sbjct: 422 HFALGRNRELQGLARAMVKLWETSAIAKIAIKRGVPNTCNDRMAEELRKLTGGTLLSRNK 481
Query: 243 DFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGT 302
+++VFYRG +FL P VT L ER++L QDEE++AR AS+ + + + + AGT
Sbjct: 482 EYIVFYRGNDFLPPVVTNTLNERQKLTLLQQDEEDKARQIASSITVSNSKAAQVPLIAGT 541
Query: 303 LKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKV 362
L ET A + WG + EN++R++ + + + LV+ EKKLA A+ K +AE+AL+KV
Sbjct: 542 LTETRAATTNWGHQPSKQEIENMIRDSAMNKLSALVKHHEKKLALAKSKFRKAEKALAKV 601
Query: 363 EESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELV 422
+ L PA+ +D E++T+EERF+FRK+GL MK +LLLGRR V+ GT+ENMHLHWKYRELV
Sbjct: 602 QRDLDPADIPSDLETLTNEERFLFRKIGLSMKPYLLLGRRDVYAGTIENMHLHWKYRELV 661
Query: 423 KIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKG-YAMVVYRGKDYQRPSTLRPKNLL 481
K+IVK + Q K I+++LEAESGGVLVSVDK ++G + ++VYRGK+Y P +RPKNLL
Sbjct: 662 KLIVKGRNSAQVKHISISLEAESGGVLVSVDKDTRGHHTIIVYRGKNYFSPRVVRPKNLL 721
Query: 482 TKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQ-LYDKLDSAYA 540
T+R+ALARS+ELQR+EAL H++ LE G L+SE+E M + K D + LY L++ +
Sbjct: 722 TRRQALARSVELQRREALKHHISDLEERIGLLKSELEDMKNGKEIEDSKTLYPALENPVS 781
Query: 541 TEDDDSE 547
++DD E
Sbjct: 782 SDDDLEE 788
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 5/118 (4%)
Query: 377 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKK 436
+I + E RK+ LRM +G +G+ V ++H W+ E+VK + KK
Sbjct: 200 TIPEHELRRLRKIALRMMERFDVGVKGITQELVASVHQKWRDAEVVKFKFGIPLSAHMKK 259
Query: 437 IALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNL-LTKRKALARSIEL 493
LE++ GG+++ G ++V+YRG Y+ P K + L K A+ S+ +
Sbjct: 260 AHQILESKIGGIVI----WRSGSSIVLYRGMAYKLPCIENYKKVNLAKENAVDHSLHV 313
>gi|449452735|ref|XP_004144114.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 846
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 264/520 (50%), Positives = 358/520 (68%), Gaps = 23/520 (4%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
+TGGLVIWRSG+ + LYRG++Y +P VQ KQ
Sbjct: 344 RTGGLVIWRSGSLIVLYRGMTYHLPCVQ----------------------SYAKQNQAKS 381
Query: 66 NSLSAAADKTAQDPS-NFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLG 124
N+L + + D + N + V + AS+ +T +E+ ++ LLD +G
Sbjct: 382 NTLDVPNNVESDDITRNEKLHTTVGTMSTIVSGASKHTKTLSKKELMELSDLNHLLDEIG 441
Query: 125 PRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHF 184
PR+ DW GC+P+PVDAD+LPGIVPGY+PP R+LPYGVR L KE T +RLAR +PPHF
Sbjct: 442 PRFKDWSGCEPVPVDADLLPGIVPGYKPPTRILPYGVRHCLRNKEVTIFRRLARKMPPHF 501
Query: 185 ALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDF 244
ALGR+RQLQGLA AM+KLWEK +IAKIA+KRGV+ T +ERM E+++ LTGGTLLSRNK++
Sbjct: 502 ALGRNRQLQGLANAMVKLWEKCAIAKIAIKRGVENTRNERMAEELRILTGGTLLSRNKEY 561
Query: 245 LVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLK 304
+VFYRG ++L P +TEAL+ER +LA QD EEQ R ASA + ++ AGTL
Sbjct: 562 IVFYRGNDYLPPTITEALKERRKLADRQQDVEEQVRQVASAAIESKVKASNAPLVAGTLT 621
Query: 305 ETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEE 364
ET+ A SRWG + EN+ ++ + + L++ L+KKLA A+ K+ AE+ ++K++E
Sbjct: 622 ETIAATSRWGSQPSGHDIENMREDSALAKLDSLIEYLKKKLALAKCKVKNAEKIIAKLQE 681
Query: 365 SLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI 424
+P++ D E+ITDEER +FRK+GL MK +LLLGRRGV+DGTVENMHLHWK+RELVKI
Sbjct: 682 KKEPSDLPTDLETITDEERLLFRKIGLSMKPYLLLGRRGVYDGTVENMHLHWKFRELVKI 741
Query: 425 IVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKR 484
IV+ KT Q K +A++LEAES GV++S+DK +KGY ++VYRGK+Y RP +RPKN+LT+R
Sbjct: 742 IVRGKTLQQVKHVAISLEAESNGVVISLDKTTKGYEVIVYRGKNYTRPDAMRPKNMLTRR 801
Query: 485 KALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVK 524
+ALARSIELQR+EAL H+ LE L++E+E+ S K
Sbjct: 802 QALARSIELQRREALKHHILDLEEKIELLKAELEERKSGK 841
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 386 FRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAES 445
R + LRM + +G +G+ ++++H WK E+VK+ + K+ LE +
Sbjct: 286 LRNISLRMVERIEVGVKGITQELLDSIHEKWKVDEVVKLKFEGPLTVNMKRAHEKLENRT 345
Query: 446 GGVLVSVDKISKGYAMVVYRGKDYQRPST 474
GG+++ G +V+YRG Y P
Sbjct: 346 GGLVI----WRSGSLIVLYRGMTYHLPCV 370
>gi|449529423|ref|XP_004171699.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like, partial [Cucumis sativus]
Length = 789
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 264/520 (50%), Positives = 358/520 (68%), Gaps = 23/520 (4%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
+TGGLVIWRSG+ + LYRG++Y +P VQ KQ
Sbjct: 287 RTGGLVIWRSGSLIVLYRGMTYHLPCVQ----------------------SYAKQNQAKS 324
Query: 66 NSLSAAADKTAQDPS-NFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLG 124
N+L + + D + N + V + AS+ +T +E+ ++ LLD +G
Sbjct: 325 NTLDVPNNVESDDITRNEKLHTTVGTMSTIVSGASKHTKTLSKKELMELSDLNHLLDEIG 384
Query: 125 PRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHF 184
PR+ DW GC+P+PVDAD+LPGIVPGY+PP R+LPYGVR L KE T +RLAR +PPHF
Sbjct: 385 PRFKDWSGCEPVPVDADLLPGIVPGYKPPTRILPYGVRHCLRNKEVTIFRRLARKMPPHF 444
Query: 185 ALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDF 244
ALGR+RQLQGLA AM+KLWEK +IAKIA+KRGV+ T +ERM E+++ LTGGTLLSRNK++
Sbjct: 445 ALGRNRQLQGLANAMVKLWEKCAIAKIAIKRGVENTRNERMAEELRILTGGTLLSRNKEY 504
Query: 245 LVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLK 304
+VFYRG ++L P +TEAL+ER +LA QD EEQ R ASA + ++ AGTL
Sbjct: 505 IVFYRGNDYLPPTITEALKERRKLADRQQDVEEQVRQVASAAIESKVKASNAPLVAGTLT 564
Query: 305 ETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEE 364
ET+ A SRWG + EN+ ++ + + L++ L+KKLA A+ K+ AE+ ++K++E
Sbjct: 565 ETIAATSRWGSQPSGHDIENMREDSALAKLDSLIEYLKKKLALAKCKVKNAEKIIAKLQE 624
Query: 365 SLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI 424
+P++ D E+ITDEER +FRK+GL MK +LLLGRRGV+DGTVENMHLHWK+RELVKI
Sbjct: 625 KKEPSDLPTDLETITDEERLLFRKIGLSMKPYLLLGRRGVYDGTVENMHLHWKFRELVKI 684
Query: 425 IVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKR 484
IV+ KT Q K +A++LEAES GV++S+DK +KGY ++VYRGK+Y RP +RPKN+LT+R
Sbjct: 685 IVRGKTLQQVKHVAISLEAESNGVVISLDKTTKGYEVIVYRGKNYTRPDAMRPKNMLTRR 744
Query: 485 KALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVK 524
+ALARSIELQR+EAL H+ LE L++E+E+ S K
Sbjct: 745 QALARSIELQRREALKHHILDLEEKIELLKAELEERKSGK 784
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 386 FRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAES 445
R + LRM + +G +G+ ++++H WK E+VK+ + K+ LE +
Sbjct: 229 LRNISLRMVERIEVGVKGITQELLDSIHEKWKVDEVVKLKFEGPLTVNMKRAHEKLENRT 288
Query: 446 GGVLVSVDKISKGYAMVVYRGKDYQRPS 473
GG+++ G +V+YRG Y P
Sbjct: 289 GGLVI----WRSGSLIVLYRGMTYHLPC 312
>gi|125549065|gb|EAY94887.1| hypothetical protein OsI_16687 [Oryza sativa Indica Group]
Length = 893
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 241/436 (55%), Positives = 330/436 (75%)
Query: 123 LGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPP 182
LGPRY DW G P+PVDAD+LPG+VPGY+ PFR+LPY V+STL KE T L+RLAR P
Sbjct: 441 LGPRYKDWSGRGPIPVDADLLPGVVPGYKTPFRLLPYMVKSTLRNKEMTALRRLARQTAP 500
Query: 183 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNK 242
HFALGR+R+ QGLA A++KLWEKSSIAKIA+KRGV T ++RM E+I+KLTGG LLSRNK
Sbjct: 501 HFALGRNREHQGLATAIVKLWEKSSIAKIAIKRGVPNTCNDRMAEEIRKLTGGVLLSRNK 560
Query: 243 DFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGT 302
+++VFYRG +F++P V + L E++ A + QDEEE ARL+ASA + + + AGT
Sbjct: 561 EYIVFYRGNDFITPKVRQVLVEKQEQAITWQDEEELARLKASASISVKPKVFKNPPVAGT 620
Query: 303 LKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKV 362
L ET +A SRWG ++ ++ + +H L++ L++KL A+ K+++AE+AL+KV
Sbjct: 621 LAETREAKSRWGDSINAELRKKEKNHMILTKHTSLLRNLKRKLILAKTKVIKAEKALAKV 680
Query: 363 EESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELV 422
+E L PAE D E++TDEERF+ R++GL+MKAFL+LGRR VFDGTV+NMHLHWK+RELV
Sbjct: 681 QEFLSPAELPTDLETVTDEERFLLRRIGLKMKAFLMLGRREVFDGTVQNMHLHWKHRELV 740
Query: 423 KIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLT 482
K++VK K+F Q K IA++LEAESGGVL+SVDK +KGYA+++YRGK+Y+ P L+P+NLL+
Sbjct: 741 KVLVKGKSFPQVKHIAISLEAESGGVLISVDKTTKGYAIILYRGKNYKTPQILKPRNLLS 800
Query: 483 KRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATE 542
+RKALARSIELQR+E L H++ L +L+S++ +M D +L +++ + +
Sbjct: 801 RRKALARSIELQRREGLNHHISNLRDKIWKLKSQLVRMQVAGEKPDAELLQTVEADLSKD 860
Query: 543 DDDSEDEGDEAYLEMY 558
DD EDEG+EAYL+ Y
Sbjct: 861 DDKIEDEGEEAYLQTY 876
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 377 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKK 436
+I + E R + LRMK + +G GV VE++H W+ E+VK+ + K+
Sbjct: 339 TIPEHELRRLRDVALRMKERMRVGPGGVTQLIVESIHQKWRVEEVVKLRFEGPPSLNMKR 398
Query: 437 IALALEAESGGVLVSVDKISKGYAMVVYRGKDY 469
LE +GG+++ G ++V+YRG +Y
Sbjct: 399 THDILEERTGGIVI----WRSGRSVVLYRGMNY 427
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQ 33
+TGG+VIWRSG +V LYRG++Y + VQ
Sbjct: 406 RTGGIVIWRSGRSVVLYRGMNYNLRCVQ 433
>gi|357158137|ref|XP_003578028.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 962
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 271/568 (47%), Positives = 388/568 (68%), Gaps = 29/568 (5%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
+TGG VIWRSG ++ LYRG++Y + VQ +I + + + K++ ++
Sbjct: 421 RTGGTVIWRSGRSIVLYRGMNYNLRCVQSYAKIAEVD----------SSKKVSDVSTVVP 470
Query: 66 NSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGP 125
+ + K++ D N S + V ++Q ET +++ LD LGP
Sbjct: 471 SCVEHNLQKSSADGVN-RSTSIVSSSQGATETF----------------DIDSFLDQLGP 513
Query: 126 RYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFA 185
RY DW G P+PVDAD+LPG+VP Y+PPFR LPY + +L KE T L+RLAR PHFA
Sbjct: 514 RYKDWSGRSPIPVDADLLPGVVPDYKPPFRQLPYRTKLSLRDKEMTALRRLARQTAPHFA 573
Query: 186 LGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFL 245
LGR+R+ QGLA A++KLWEKS+I KIA+KRGV T ++RM E+IKKLTGG L+SRNK+++
Sbjct: 574 LGRNREHQGLASAIVKLWEKSTIVKIAIKRGVPNTCNDRMAEEIKKLTGGVLISRNKEYI 633
Query: 246 VFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKE 305
+FYRG +F++P + + L E+++ A + QD+EE ARL+ASA + ++ AGTL E
Sbjct: 634 IFYRGNDFMTPKIRQVLVEQQQQAITQQDQEELARLKASASITLIPNALKNPQVAGTLAE 693
Query: 306 TLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEES 365
T +A SRWG ++D ++ + +H L++ + +KL A+ K+ +AE AL+KV+E
Sbjct: 694 TREAESRWGDLINDGRRKKERNHLILAKHTSLLKNMTRKLILAKTKVAKAEMALAKVQEF 753
Query: 366 LKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKII 425
L PAE D E++TDEERF+FR++GL+MKAFL+LGRR VF GTV+NMHLHWK+RELVKII
Sbjct: 754 LSPAELPTDLETVTDEERFLFRRIGLKMKAFLMLGRREVFAGTVQNMHLHWKHRELVKII 813
Query: 426 VKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRK 485
VK K+F Q K IA++LEAESGGVL+S+DK +KGY+++VYRGK+Y+RP L+P+NLLT+R+
Sbjct: 814 VKGKSFAQVKHIAISLEAESGGVLISLDKTTKGYSIIVYRGKNYKRPQILKPRNLLTRRR 873
Query: 486 ALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATEDDD 545
A+ARSIELQR+EAL H++ L +L+S++ QM G D L ++ +++DDD
Sbjct: 874 AMARSIELQRREALNHHISILRQKIWKLKSQLAQMRVAGGKQDADLLQTVEDDLSSDDDD 933
Query: 546 SEDEGDEAYLEMYAGGNDNEDEIDNSTH 573
EDEGDEAYL+ Y +D ED+ N ++
Sbjct: 934 IEDEGDEAYLQTYI--SDGEDDAGNESN 959
>gi|334187011|ref|NP_194704.2| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
gi|332660271|gb|AEE85671.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
Length = 841
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 273/561 (48%), Positives = 371/561 (66%), Gaps = 48/561 (8%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
+KTGGLVIWRSG++V LYRG+SY++ VQ K+N L A + +IH+
Sbjct: 309 KKTGGLVIWRSGSSVVLYRGISYKLKCVQT---FIKQNNLEA-------NPEIHR----- 353
Query: 65 GNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLG 124
S A Q+ N+ + +EQ ++ E+ LLD +G
Sbjct: 354 ----SVEARDYVQEDGNYP------------KNVPKEQLSELC-------ELNDLLDEVG 390
Query: 125 PRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHF 184
PR+ DW GC P PVDAD+LPG V GY+ PFR+LP GV+ L+ E T ++RLAR PPHF
Sbjct: 391 PRFHDWTGCAPFPVDADLLPGYVEGYRCPFRILPQGVKPCLSNTEMTEMRRLARTSPPHF 450
Query: 185 ALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDF 244
ALGRSR+LQGLA AM+KLW KS+IAKIA+KRGV+ T +ERM E++K+LT G L+SRNK++
Sbjct: 451 ALGRSRELQGLAKAMVKLWAKSAIAKIAIKRGVENTRNERMAEELKRLTRGVLVSRNKEY 510
Query: 245 LVFYRGKNFLSPDVTEALQERER-LAKSLQDEEEQARLRAS--AFVLPSIETIEKSGTAG 301
+VFYRG +F+ P V EAL ER++ + + LQ +E+QAR AS A + ++ + AG
Sbjct: 511 IVFYRGNDFMPPAVAEALTERQKEITEVLQAKEDQAREMASTRATLTSQAKSPKTQLLAG 570
Query: 302 TLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSK 361
TL ET+ A+SRW E L RE+ + A L++ LE +L ++KL RAER L+K
Sbjct: 571 TLAETIAASSRWAPNASSVDIEELKRESASIKRAALIRDLELRLLYGKQKLRRAERDLAK 630
Query: 362 VEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYREL 421
V++ L P+E D E IT+EER ++RK+GL M FLLLGRR V+DGT+ENMHLHWK+REL
Sbjct: 631 VQKDLDPSELPTDSEIITEEERLLYRKIGLSMDPFLLLGRREVYDGTIENMHLHWKHREL 690
Query: 422 VKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLL 481
VK+IV+ K+ Q K IA++LEAESGGVLVSVDK KGYA+++YRGK+YQ P LRP NLL
Sbjct: 691 VKVIVRGKSLPQVKHIAISLEAESGGVLVSVDKTMKGYAIILYRGKNYQMPFRLRPSNLL 750
Query: 482 TKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQ---LYDKLD-S 537
T++KA ARSIELQR+EAL HVA LE L++ + + DE+ LY ++D S
Sbjct: 751 TRKKAFARSIELQRREALKYHVADLEERIELLKTGQDDDMETRNKSDEEEENLYLRVDES 810
Query: 538 AYATEDDDS---EDEGDEAYL 555
+++++D+S E E +E +L
Sbjct: 811 DFSSDEDESLEWESEKNETFL 831
Score = 42.4 bits (98), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 386 FRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAES 445
R + LRM + +G G+ VE +H W+ E+VK+ K+ LE ++
Sbjct: 252 LRNVALRMVERVKVGSAGITQALVEAIHEKWEVDEVVKLKFSEPYSLNMKRTHEVLEKKT 311
Query: 446 GGVLVSVDKISKGYAMVVYRGKDYQRPS--TLRPKNLLTKRKALARSIE 492
GG+++ G ++V+YRG Y+ T +N L + RS+E
Sbjct: 312 GGLVI----WRSGSSVVLYRGISYKLKCVQTFIKQNNLEANPEIHRSVE 356
>gi|110742047|dbj|BAE98956.1| hypothetical protein [Arabidopsis thaliana]
Length = 717
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 249/403 (61%), Positives = 305/403 (75%), Gaps = 25/403 (6%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
+KTGGLVIWRSGT++SLYRGVSYE+PS + NK+ +R E P +V + D+
Sbjct: 286 KKTGGLVIWRSGTSISLYRGVSYELPSGKWNKQ--RREETPPEAVIENHDET-------- 335
Query: 65 GNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLG 124
+ DK+ + VH Q+ ET S E++ V+YEDE+++LLD LG
Sbjct: 336 ----TTMVDKSDE---------KVHLPQLEQETTSVEKKDQTSPVVEYEDELDELLDDLG 382
Query: 125 PRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHF 184
PR+ DWPG +PLPVDAD+LPG +P Y+PPFRVLPYGVRS+L KEAT L+RLAR +PPHF
Sbjct: 383 PRFMDWPGDNPLPVDADLLPGAIPDYEPPFRVLPYGVRSSLGPKEATALRRLARSIPPHF 442
Query: 185 ALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDF 244
ALGRSRQLQGLA AM++LWEKS +AKIA+KRGVQ TTSERM ED+KKLTGG +LSRNKDF
Sbjct: 443 ALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSERMAEDLKKLTGGIMLSRNKDF 502
Query: 245 LVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLR-ASAFVLPSIETIEKSGTAGTL 303
LVFYRGKNFLS +V +AL E+ER ++LQDEEEQARLR +SA ++PS E K +AGTL
Sbjct: 503 LVFYRGKNFLSREVADALVEQERFVRTLQDEEEQARLRGSSALIVPSTEPANKLVSAGTL 562
Query: 304 KETLDANSRWGKRL-DDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKV 362
ETLDA +WGK L DD H + + +E E+ RH LV+KLE+KLA AERKLL+AER L+KV
Sbjct: 563 GETLDATGKWGKNLDDDDHSDEVKQEVEILRHENLVRKLERKLAFAERKLLKAERGLAKV 622
Query: 363 EESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVF 405
E LKPAE++ DPESITDEERFMFRKLGL+MKAFLLLG +F
Sbjct: 623 EVCLKPAEQREDPESITDEERFMFRKLGLKMKAFLLLGFAPIF 665
>gi|449440945|ref|XP_004138244.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
gi|449477054|ref|XP_004154915.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 560
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 251/513 (48%), Positives = 332/513 (64%), Gaps = 32/513 (6%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
R+TGGLV+WRSG+ + +YRG +YE PS ++ + + VS AT S S
Sbjct: 10 RRTGGLVLWRSGSVMVVYRGSNYEGPS-KIKPLTRDGDGVFIPDVSSAT-------TSTS 61
Query: 65 GNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLG 124
N ++ +KT P N E SEE E E +LLDGLG
Sbjct: 62 DNVAASVPEKTMM-PIGPPMSN---------EGLSEE-----------EAEYNQLLDGLG 100
Query: 125 PRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHF 184
PR+ +W G LPVDAD LP +PGY+ PFR+LP G+RS L E T +++LA+ LP HF
Sbjct: 101 PRFVEWWGTGVLPVDADQLPPSIPGYKTPFRLLPTGMRSRLTNAEMTQMRKLAKSLPCHF 160
Query: 185 ALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDF 244
ALGR+R QGLAVA++KLWEKS + KIA+KRG+Q T ++ M E+I LTGG LL RNK F
Sbjct: 161 ALGRNRNHQGLAVAILKLWEKSLVVKIAVKRGIQNTNNKLMAEEIGNLTGGVLLLRNKYF 220
Query: 245 LVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLK 304
+V YRGK+FL P V AL ER+ L K +QD EE+ R + V + +I AGTL
Sbjct: 221 IVIYRGKDFLPPSVAVALTERQELTKQIQDVEEKVR---NKVVEATSLSINGQAPAGTLA 277
Query: 305 ETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEE 364
E +A SRWG+ + +E +V E+ + A LV+++E KL A+ K LRAE+ LSK+E
Sbjct: 278 EFYEAQSRWGREITAEEREKMVEESSRAKTARLVRRIEHKLGVAQAKKLRAEKLLSKIEA 337
Query: 365 SLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI 424
S+ + D E+ITDEER MFR++GLRM A+L +G RGVFDG VENMHLHWK+RELVK+
Sbjct: 338 SMILSSPDDDQETITDEERVMFRRVGLRMTAYLPMGIRGVFDGVVENMHLHWKHRELVKL 397
Query: 425 IVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKR 484
I K KT ++ A LE ESGG+LVS+D++ KGYA+V YRGK+Y+RP LRP+NLLTK
Sbjct: 398 ISKQKTLAFVEETARLLEYESGGILVSIDRVPKGYALVYYRGKNYRRPIALRPRNLLTKA 457
Query: 485 KALARSIELQRQEALLKHVATLESNAGRLRSEI 517
KAL RS+ +QR EAL +H++ LE N +++ EI
Sbjct: 458 KALKRSVAMQRHEALSQHISELEQNIEQMKKEI 490
>gi|297734212|emb|CBI15459.3| unnamed protein product [Vitis vinifera]
Length = 830
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 259/568 (45%), Positives = 346/568 (60%), Gaps = 34/568 (5%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
R+TGGLV WRSG+ + ++RG +YE P Q D +
Sbjct: 279 RRTGGLVTWRSGSVMVVFRGTNYEGPPK-----------------PQPVDGE-------- 313
Query: 65 GNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVE--KLLDG 122
G+SL + +P+ + NN T LE S E E+E E LLDG
Sbjct: 314 GDSLFVPDVSSVDNPA-MRNDNNGGPT---LEKGSLPVRNPVHAENMTEEEAEYNSLLDG 369
Query: 123 LGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPP 182
LGPR+ DW G LPVD D+LP +PGY+ P R+LP G+R L E TNL++LA+ LP
Sbjct: 370 LGPRFVDWWGTGVLPVDGDLLPQSIPGYKTPLRILPTGMRPRLTNAEMTNLRKLAKSLPC 429
Query: 183 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNK 242
HFALGR+R QGLA A+IKLWEKS + KIA+K G+Q T ++ M E+IK LTGG LL RNK
Sbjct: 430 HFALGRNRNHQGLAAAIIKLWEKSIVVKIAVKPGIQNTNNKLMAEEIKNLTGGVLLLRNK 489
Query: 243 DFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGT 302
++V YRGK+FL V AL ERE L K +Q EE+ R A +PS E AGT
Sbjct: 490 YYIVIYRGKDFLPTSVAAALSEREELTKHIQVVEEKVRT-GGAEAIPSGEDGVGQPLAGT 548
Query: 303 LKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKV 362
L E +A +RWG+ + E ++ EA + A +V+++E KLA A+ K LRAER L+K+
Sbjct: 549 LAEFYEAQARWGREISAEEHEKMIEEASRAKSARVVKRIEHKLALAQAKKLRAERLLAKI 608
Query: 363 EESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELV 422
E S+ PA D E+ITDEERFMFR+LGLRMKA+LLLG RGVFDG +ENMHLHWK+RELV
Sbjct: 609 EASMIPAGPSDDQETITDEERFMFRRLGLRMKAYLLLGVRGVFDGVIENMHLHWKHRELV 668
Query: 423 KIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLT 482
K+I K KT + A LE ESGG+LV+++++ KGYA++ YRGK+Y+RP +LRP+NLLT
Sbjct: 669 KLISKQKTLAFVEDTARLLEYESGGILVAIERVPKGYALIYYRGKNYRRPVSLRPRNLLT 728
Query: 483 KRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSV--KGTGDEQLYDKLDSAYA 540
K KAL RS+ +QR EAL +H++ LE +++ EI K + + + + D
Sbjct: 729 KAKALKRSVAMQRHEALSQHISELERTIEQMKMEIGDSKDAEDKDSWSTEGHGQFDQVSE 788
Query: 541 TEDDDSEDEGDEAYLEMYAGGNDNEDEI 568
+ED+ S + D +E +D E I
Sbjct: 789 SEDEASGMDSDADDVEDIDWKDDEESGI 816
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 377 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKK 436
+I DEE R+LG+ ++ + + + G+ + +H W+ ELV++ K
Sbjct: 213 TIEDEELRRLRRLGMTIRERINVPKAGITQAVLGKIHEKWRKEELVRLKFHEALAHDMKT 272
Query: 437 IALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRP 477
+E +GG++ G MVV+RG +Y+ P +P
Sbjct: 273 AHEIVERRTGGLVT----WRSGSVMVVFRGTNYEGPPKPQP 309
>gi|147815878|emb|CAN72582.1| hypothetical protein VITISV_035294 [Vitis vinifera]
Length = 850
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 248/515 (48%), Positives = 326/515 (63%), Gaps = 32/515 (6%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
R+TGGLV WRSG+ + ++RG +YE P Q D +
Sbjct: 279 RRTGGLVTWRSGSVMVVFRGTNYEGPPK-----------------PQPVDGE-------- 313
Query: 65 GNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVE--KLLDG 122
G+SL + +P+ + NN T LE S E E+E E LLDG
Sbjct: 314 GDSLFVPDVSSVDNPA-MRNDNNGGPT---LEKGSLPVRNPVHAENMTEEEAEYNSLLDG 369
Query: 123 LGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPP 182
LGPR+ DW G LPVD D+LP +PGY+ P R+LP G+R L E TNL++LA+ LP
Sbjct: 370 LGPRFVDWWGTGVLPVDGDLLPQSIPGYKTPLRILPTGMRPRLTNAEMTNLRKLAKSLPC 429
Query: 183 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNK 242
HFALGR+R QGLA A+IKLWEKS + KIA+K G+Q T ++ M E+IK LTGG LL RNK
Sbjct: 430 HFALGRNRNHQGLAAAIIKLWEKSIVVKIAVKPGIQNTNNKLMAEEIKNLTGGVLLLRNK 489
Query: 243 DFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGT 302
++V YRGK+FL V AL ERE L K +Q EE+ R A +PS E AGT
Sbjct: 490 YYIVIYRGKDFLPTSVAAALSEREELTKHIQVVEEKVRT-GGAEAIPSGEDGVGQPLAGT 548
Query: 303 LKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKV 362
L E +A +RWG+ + E ++ EA + A +V+++E KLA A+ K LR ER L+K+
Sbjct: 549 LAEFYEAQARWGREISAEEHEKMIEEASRAKSARVVKRIEHKLALAQAKKLRPERLLAKI 608
Query: 363 EESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELV 422
E S+ PA D E+ITDEERFMFR+LGLRMKA+LLLG RGVFDG +ENMHLHWK+RELV
Sbjct: 609 EASMIPAGPSDDQETITDEERFMFRRLGLRMKAYLLLGVRGVFDGVIENMHLHWKHRELV 668
Query: 423 KIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLT 482
K+I K KT + A LE ESGG+LV+++++ KGYA++ YRGK+Y+RP +LRP+NLLT
Sbjct: 669 KLISKQKTLAFVEDTARLLEYESGGILVAIERVPKGYALIYYRGKNYRRPVSLRPRNLLT 728
Query: 483 KRKALARSIELQRQEALLKHVATLESNAGRLRSEI 517
K KAL RS+ +QR EAL +H++ LE +++ EI
Sbjct: 729 KAKALKRSVAMQRHEALSQHISELERTIEQMKMEI 763
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 377 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKK 436
+I DEE R+LG+ ++ + + + G+ + +H W+ ELV++ K
Sbjct: 213 TIEDEELRRLRRLGMTIRERINVPKAGITQAVLGKIHEKWRKEELVRLKFHEALAHDMKT 272
Query: 437 IALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRP 477
+E +GG++ G MVV+RG +Y+ P +P
Sbjct: 273 AHEIVERRTGGLVT----WRSGSVMVVFRGTNYEGPPKPQP 309
>gi|297803062|ref|XP_002869415.1| hypothetical protein ARALYDRAFT_328739 [Arabidopsis lyrata subsp.
lyrata]
gi|297315251|gb|EFH45674.1| hypothetical protein ARALYDRAFT_328739 [Arabidopsis lyrata subsp.
lyrata]
Length = 775
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 241/443 (54%), Positives = 317/443 (71%), Gaps = 15/443 (3%)
Query: 115 EVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQ 174
E+ LLD LGPR+ DW GC P PVDAD+LPG V GY+ PFR+LP GV+ L+ E T ++
Sbjct: 338 ELNDLLDELGPRFHDWTGCAPFPVDADLLPGYVEGYRCPFRILPQGVKPCLSNTEMTEMR 397
Query: 175 RLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTG 234
RLAR PPHFALGRSR+LQGLA AM+KLW KS+IAKIA+KRGV+ T +ERM E++K+LT
Sbjct: 398 RLARTSPPHFALGRSRELQGLAKAMVKLWAKSAIAKIAIKRGVENTRNERMAEELKRLTR 457
Query: 235 GTLLSRNKDFLVFYRGKNFLSPDVTEALQERER-LAKSLQDEEEQARLRASAFVLPSIET 293
G L+SRNK+++VFYRG +F+ P V EAL ER++ + + LQ +E+Q R AS V ++ +
Sbjct: 458 GVLVSRNKEYIVFYRGNDFMPPAVAEALTERQKEITEVLQTKEDQVREMASTRV--TLTS 515
Query: 294 IEKSGT----AGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAE 349
KS AGTL ET+ A+SRW E L RE+ + A L++ LE +L +
Sbjct: 516 QAKSPKTQLLAGTLAETIAASSRWAPDASSVDIEELKRESASIKRAALIRDLELRLLYGK 575
Query: 350 RKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTV 409
+KL RAER L+KV++ L P+E D E+IT+EER ++RK+GL M FLLLGRR V+DGT+
Sbjct: 576 QKLRRAERDLAKVQKDLDPSELPTDSETITEEERLLYRKIGLSMDPFLLLGRREVYDGTI 635
Query: 410 ENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDY 469
ENMHLHWK+RELVK+IV+ K+ Q K IA++LEAESGGVLVSVDK KGY++++YRGK+Y
Sbjct: 636 ENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVDKTMKGYSIILYRGKNY 695
Query: 470 QRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRS--EIEQMNSVKGTG 527
Q P LRP NLLT++KA ARSIELQR+EAL HVA LE L++ + ++ K G
Sbjct: 696 QMPFRLRPSNLLTRKKAFARSIELQRREALKYHVADLEERIELLKTGQDDDREPGRKSDG 755
Query: 528 DEQ-LYDKLDSAYATEDDDSEDE 549
+E+ LY ++D E D S DE
Sbjct: 756 EEENLYLRVD-----ESDFSSDE 773
>gi|225452572|ref|XP_002275511.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 1044
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 265/605 (43%), Positives = 373/605 (61%), Gaps = 37/605 (6%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIH--KQIS 62
RKTGGLVIWRSG+ + LYRG +Y+ P + + + ASS SQ +++ H K++
Sbjct: 251 RKTGGLVIWRSGSYIILYRGANYKYPYFLSDNNLPNDSSHDASSDSQMNNEE-HDGKEVC 309
Query: 63 MSGNS-LSAAADKTAQDPSNFDSYNNV-HATQVNLETASEEQETDFVREVKYEDEVEKLL 120
SG + +A A + V + T+V + E Q E+E ++LL
Sbjct: 310 SSGKGDVKSAGPMPANKIAPLSLIQGVGYPTRVRFQLPGEAQ---------LEEEADRLL 360
Query: 121 DGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVL 180
DGLGPR+TDW G DPLP+DAD+LP +VPGY+ PFR+LPYG++ L E T L+RL R L
Sbjct: 361 DGLGPRFTDWWGYDPLPIDADLLPAVVPGYRRPFRLLPYGLKPKLTNDEMTVLRRLGRPL 420
Query: 181 PPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSR 240
P HFALGR+R+LQGLA +MIKLWEK IAKIA+KRGVQ T SE M E++K LTGGTLLSR
Sbjct: 421 PCHFALGRNRKLQGLAASMIKLWEKCEIAKIAVKRGVQNTNSEMMAEELKNLTGGTLLSR 480
Query: 241 NKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEE-EQARLRASAFVLPSIETIEKSGT 299
+++F+VFYRGK+FL P V+ A++ R + ++ + RL +A +
Sbjct: 481 DREFIVFYRGKDFLPPAVSSAIEARRKYGIHRGKQKIDHHRLAINA----------EESE 530
Query: 300 AGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERAL 359
GT + D + DD +L + +R +V++ KL+ A K RAE+ L
Sbjct: 531 LGTSEHASDKDC---DGTDDQKTNSLSKRRMLRSAEAVVERTNIKLSMALEKKERAEKLL 587
Query: 360 SKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYR 419
+++EE+ P + + D E IT+EER+M RK+GLRMK FLLLGRRG+FDGTVENMHLHWKYR
Sbjct: 588 AELEEAQIPQQPEIDKEGITEEERYMLRKVGLRMKPFLLLGRRGIFDGTVENMHLHWKYR 647
Query: 420 ELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKN 479
ELVKII ++ + +A LEAESGG+LV+V+++SKGYA+++YRGK+Y+RP++LRP+
Sbjct: 648 ELVKIISNGRSIEDIHGVARTLEAESGGILVAVERVSKGYAIIMYRGKNYKRPASLRPQT 707
Query: 480 LLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAY 539
LL KR+AL RS+E QR+E+L HV L N L+ ++ K T +QL DK
Sbjct: 708 LLNKREALKRSLEAQRRESLKLHVLRLTRNIDELKHQLVSRIKDKETNSKQLVDKSRLHL 767
Query: 540 ATEDDDSEDEGDEAYLEMYAGGNDNEDEIDNSTHNLEMESDFPYHAQDQESETELMDSES 599
A E G + L + G D+ + ++HN + DFP +S+T+ + E
Sbjct: 768 A-----RERYGADVILIHSSDGMDSSRDSLQTSHN-DKRIDFPSMC---DSDTDEANPEP 818
Query: 600 EAYTV 604
+ +V
Sbjct: 819 SSESV 823
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 68/131 (51%), Gaps = 7/131 (5%)
Query: 350 RKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTV 409
RK ++ E+ L + E+ P + ++ +EE + +G++++ L +G+ G+ +G V
Sbjct: 161 RKEVKREKKLVRKEDERAPTLAEL---TLPEEELRRLKGIGIQIRKKLKVGKAGITEGIV 217
Query: 410 ENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDY 469
+H W+ E+VKI + K+ LE ++GG+++ G +++YRG +Y
Sbjct: 218 NGIHERWRRAEVVKIRCEDICKLNMKRTHDILERKTGGLVI----WRSGSYIILYRGANY 273
Query: 470 QRPSTLRPKNL 480
+ P L NL
Sbjct: 274 KYPYFLSDNNL 284
Score = 42.7 bits (99), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 153 PFRVLPYGVRS-TLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKI 211
PFR P R L RK+A +++ P A+GRS + G+A + ++K +A +
Sbjct: 893 PFRAAPLSNRERLLLRKQALRMKKR-----PVIAVGRSNIVTGVAKTIKAHFQKHPLAIV 947
Query: 212 ALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRG 250
+K + T+ + ++ +++ TG L+S+ ++ YRG
Sbjct: 948 NVKGRAKGTSVQEVIFKLEQATGAVLVSQEPSKVILYRG 986
>gi|296087726|emb|CBI34982.3| unnamed protein product [Vitis vinifera]
Length = 1028
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 265/605 (43%), Positives = 373/605 (61%), Gaps = 37/605 (6%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIH--KQIS 62
RKTGGLVIWRSG+ + LYRG +Y+ P + + + ASS SQ +++ H K++
Sbjct: 251 RKTGGLVIWRSGSYIILYRGANYKYPYFLSDNNLPNDSSHDASSDSQMNNEE-HDGKEVC 309
Query: 63 MSGNS-LSAAADKTAQDPSNFDSYNNV-HATQVNLETASEEQETDFVREVKYEDEVEKLL 120
SG + +A A + V + T+V + E Q E+E ++LL
Sbjct: 310 SSGKGDVKSAGPMPANKIAPLSLIQGVGYPTRVRFQLPGEAQ---------LEEEADRLL 360
Query: 121 DGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVL 180
DGLGPR+TDW G DPLP+DAD+LP +VPGY+ PFR+LPYG++ L E T L+RL R L
Sbjct: 361 DGLGPRFTDWWGYDPLPIDADLLPAVVPGYRRPFRLLPYGLKPKLTNDEMTVLRRLGRPL 420
Query: 181 PPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSR 240
P HFALGR+R+LQGLA +MIKLWEK IAKIA+KRGVQ T SE M E++K LTGGTLLSR
Sbjct: 421 PCHFALGRNRKLQGLAASMIKLWEKCEIAKIAVKRGVQNTNSEMMAEELKNLTGGTLLSR 480
Query: 241 NKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEE-EQARLRASAFVLPSIETIEKSGT 299
+++F+VFYRGK+FL P V+ A++ R + ++ + RL +A +
Sbjct: 481 DREFIVFYRGKDFLPPAVSSAIEARRKYGIHRGKQKIDHHRLAINA----------EESE 530
Query: 300 AGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERAL 359
GT + D + DD +L + +R +V++ KL+ A K RAE+ L
Sbjct: 531 LGTSEHASDKDC---DGTDDQKTNSLSKRRMLRSAEAVVERTNIKLSMALEKKERAEKLL 587
Query: 360 SKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYR 419
+++EE+ P + + D E IT+EER+M RK+GLRMK FLLLGRRG+FDGTVENMHLHWKYR
Sbjct: 588 AELEEAQIPQQPEIDKEGITEEERYMLRKVGLRMKPFLLLGRRGIFDGTVENMHLHWKYR 647
Query: 420 ELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKN 479
ELVKII ++ + +A LEAESGG+LV+V+++SKGYA+++YRGK+Y+RP++LRP+
Sbjct: 648 ELVKIISNGRSIEDIHGVARTLEAESGGILVAVERVSKGYAIIMYRGKNYKRPASLRPQT 707
Query: 480 LLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAY 539
LL KR+AL RS+E QR+E+L HV L N L+ ++ K T +QL DK
Sbjct: 708 LLNKREALKRSLEAQRRESLKLHVLRLTRNIDELKHQLVSRIKDKETNSKQLVDKSRLHL 767
Query: 540 ATEDDDSEDEGDEAYLEMYAGGNDNEDEIDNSTHNLEMESDFPYHAQDQESETELMDSES 599
A E G + L + G D+ + ++HN + DFP +S+T+ + E
Sbjct: 768 A-----RERYGADVILIHSSDGMDSSRDSLQTSHN-DKRIDFPSMC---DSDTDEANPEP 818
Query: 600 EAYTV 604
+ +V
Sbjct: 819 SSESV 823
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 68/131 (51%), Gaps = 7/131 (5%)
Query: 350 RKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTV 409
RK ++ E+ L + E+ P + ++ +EE + +G++++ L +G+ G+ +G V
Sbjct: 161 RKEVKREKKLVRKEDERAPTLAEL---TLPEEELRRLKGIGIQIRKKLKVGKAGITEGIV 217
Query: 410 ENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDY 469
+H W+ E+VKI + K+ LE ++GG+++ G +++YRG +Y
Sbjct: 218 NGIHERWRRAEVVKIRCEDICKLNMKRTHDILERKTGGLVI----WRSGSYIILYRGANY 273
Query: 470 QRPSTLRPKNL 480
+ P L NL
Sbjct: 274 KYPYFLSDNNL 284
Score = 42.7 bits (99), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 153 PFRVLPYGVRS-TLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKI 211
PFR P R L RK+A +++ P A+GRS + G+A + ++K +A +
Sbjct: 893 PFRAAPLSNRERLLLRKQALRMKKR-----PVIAVGRSNIVTGVAKTIKAHFQKHPLAIV 947
Query: 212 ALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRG 250
+K + T+ + ++ +++ TG L+S+ ++ YRG
Sbjct: 948 NVKGRAKGTSVQEVIFKLEQATGAVLVSQEPSKVILYRG 986
>gi|222632479|gb|EEE64611.1| hypothetical protein OsJ_19463 [Oryza sativa Japonica Group]
Length = 601
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 252/559 (45%), Positives = 345/559 (61%), Gaps = 59/559 (10%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
R+TGGL+IWRSG+ + +YRG +Y+ P K ++
Sbjct: 53 RRTGGLIIWRSGSVMVVYRGSNYKRPL---------------------------KSETLD 85
Query: 65 GNSLSA-AADKT-----AQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEK 118
GNS + AD T A P+ DS TQ + Q T+ + E E E +
Sbjct: 86 GNSSAVKGADGTLFIPDASSPTEHDSQGKDVNTQREIAARLNMQNTEDMTE--EELEFNQ 143
Query: 119 LLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLAR 178
+LD LGPR+ DW G LPVDAD+LP +PGY+ PFR+LP G+R TL E TNL++LAR
Sbjct: 144 MLDELGPRFVDWWGTGILPVDADLLPQTIPGYKTPFRLLPTGMRLTLTNAELTNLRKLAR 203
Query: 179 VLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLL 238
LP HFALGR+R QGLA A++KLWEKS + KIA+KRG+Q T ++ M E+IK LTGGTLL
Sbjct: 204 DLPCHFALGRNRNHQGLAAAIVKLWEKSLVVKIAVKRGIQNTNNKLMSEEIKNLTGGTLL 263
Query: 239 SRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKS- 297
RNK ++V YRGK+FL V AL ERE L K +Q+ EEQ R +P + +++ S
Sbjct: 264 LRNKYYIVIYRGKDFLPTSVAAALAEREELTKDIQNVEEQKR------CIPVVHSMDDSL 317
Query: 298 ---GTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLR 354
AGTL E +A +RWG+ + +E + + L ++LE KL+ A+ K+ R
Sbjct: 318 DGHALAGTLAEFQEAQARWGREVTAKEQEEMKEASSRSVKEKLFKRLEHKLSIAQAKIHR 377
Query: 355 AERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHL 414
AER LSK+E S+ A D E ITDEER +FR++GLR+KA+L +G RGVFDG +ENMHL
Sbjct: 378 AERLLSKIEASMVLANPSDDKEMITDEERSVFRRIGLRLKAYLPVGIRGVFDGVIENMHL 437
Query: 415 HWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPST 474
HWK+RE+VK+I K KT ++ A LE ESGG+LV++++++KGYA++ YRGK+Y+RP
Sbjct: 438 HWKHREVVKLITKQKTLPFVEETARLLEYESGGILVAIERVTKGYALIFYRGKNYRRPIN 497
Query: 475 LRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDK 534
+RP+NLLTK KAL R++ +QR EAL +H+A LE+N I QM G +
Sbjct: 498 IRPRNLLTKAKALKRAVAMQRHEALSQHIAELENN-------IRQMKLDLGI-------E 543
Query: 535 LDSAYATEDDDSEDEGDEA 553
+D Y + DSE+E +EA
Sbjct: 544 VDEEYEEDGSDSENENNEA 562
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 403 GVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMV 462
GV E +H W+ ELV++ K +E +GG+++ G MV
Sbjct: 13 GVTQAVTEKIHDAWRKSELVRLKFHEDLAHDMKTAHELVERRTGGLII----WRSGSVMV 68
Query: 463 VYRGKDYQRP 472
VYRG +Y+RP
Sbjct: 69 VYRGSNYKRP 78
>gi|356522763|ref|XP_003530015.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 734
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 243/517 (47%), Positives = 325/517 (62%), Gaps = 33/517 (6%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
R+TGGLV WRSG+ + +YRG+ Y+ P Q K + VS+ D + S
Sbjct: 249 RRTGGLVTWRSGSVMMVYRGIDYQGPDSQKEVNEKKGDGFFVPDVSKRED----SSTATS 304
Query: 65 GNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLG 124
+ S + + P N + E E LLDGLG
Sbjct: 305 TSEKSEVVVREREHPENMS---------------------------EAEAEYNALLDGLG 337
Query: 125 PRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHF 184
PR+ W G LPVDAD+LP VPGY+ PFR+LP G+RS L E TNL++LA+ LP HF
Sbjct: 338 PRFVGWWGTGILPVDADLLPRTVPGYKTPFRLLPTGMRSRLTNAEMTNLRKLAKSLPCHF 397
Query: 185 ALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDF 244
ALGR+R QGLA A++KLWEKS +AKIA+KRG+Q T +E M E++K LTGGTLL RNK F
Sbjct: 398 ALGRNRNHQGLACAILKLWEKSLVAKIAVKRGIQNTNNELMAEELKMLTGGTLLLRNKYF 457
Query: 245 LVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLK 304
+V YRGK+F+ V L ERE L K +QD E++ R RA + + E + AGTL
Sbjct: 458 IVIYRGKDFVPTSVAAVLAEREELTKQVQDVEDKVRCRAVDAI--PLGQGEATAQAGTLA 515
Query: 305 ETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEE 364
E +A +RWG+ + +E +V EA + A LV+++E K+ A+ K LRAE+ L+K+E
Sbjct: 516 EFYEAQARWGREISPEEREKMVEEAAKTKTAKLVRQIEHKIFIAQTKKLRAEKLLAKIEA 575
Query: 365 SLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI 424
S+ PA D E+ITDEER MFRK+GLRMK +L LG RGVFDG VENMHLHWK+RELVK+
Sbjct: 576 SMVPAGPDYDQETITDEERVMFRKVGLRMKPYLPLGIRGVFDGVVENMHLHWKHRELVKL 635
Query: 425 IVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKR 484
+ K KT + A LE ESGG+LV+++K+SK +A++ YRGK+Y+RP TLRP+NLLTK
Sbjct: 636 MTKQKTVAFVEDTARLLEYESGGILVAIEKVSKEFALIYYRGKNYKRPITLRPRNLLTKG 695
Query: 485 KALARSIELQRQEALLKHVATLESNAGRLRSEIEQMN 521
KAL R + +QR EAL +H+ LE +++ E+ M+
Sbjct: 696 KALKRHVAMQRHEALSQHITELEKTIEQMKKELVSMD 732
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 377 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKK 436
++ DE R+ G+R++ + + + G+ +E +H W+ ELV++ + +K
Sbjct: 183 TLEDELLRRLRREGMRVRERVSVPKAGLTQEVMEKIHKRWRKEELVRLKFHEELAKDMRK 242
Query: 437 IALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPST 474
+E +GG++ G M+VYRG DYQ P +
Sbjct: 243 AHEIVERRTGGLVT----WRSGSVMMVYRGIDYQGPDS 276
>gi|356529577|ref|XP_003533366.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 791
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 256/560 (45%), Positives = 338/560 (60%), Gaps = 53/560 (9%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
R+TGGLV WRSG+ + +YRG+ Y+ P + K + VS+ D + S
Sbjct: 250 RRTGGLVTWRSGSVMMVYRGIDYQGPDSRKELNEKKGDGFFVPDVSKRED-----STATS 304
Query: 65 GNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLG 124
+ S + + P N + E E LLDGLG
Sbjct: 305 TSEKSEVVVREREHPENMS---------------------------EAEAEYNALLDGLG 337
Query: 125 PRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHF 184
PR+ W G LPVDAD+LP VPGY+ PFR+LP G+RS L E TNL++LA+ LP HF
Sbjct: 338 PRFFGWWGTGILPVDADLLPRTVPGYKTPFRLLPTGMRSRLTNAEMTNLRKLAKSLPCHF 397
Query: 185 ALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDF 244
A+GR+R QGLA A++KLWEKS ++KIA+KRG+Q T +E M E++K LTGGTLL RNK F
Sbjct: 398 AVGRNRNHQGLACAILKLWEKSLVSKIAVKRGIQNTNNELMAEELKMLTGGTLLLRNKYF 457
Query: 245 LVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLK 304
+V YRGK+F+ V L ERE L K +QD E++ R RA +PS + E + AGTL
Sbjct: 458 IVIYRGKDFVPTSVAAVLAEREELTKQVQDVEDKVRCRAVD-AIPSGQG-EATAQAGTLA 515
Query: 305 ETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEE 364
E +A +RWG+ + +E ++ EA + A LV+++E K+ A+ K LRAE+ L+K+E
Sbjct: 516 EFYEAQARWGREISPDEREKMMEEAAKAKTAKLVRQIEHKIFIAQTKKLRAEKLLAKIEA 575
Query: 365 SLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI 424
S+ PA D E+ITDEER MFRK+GLRMK +L LG RGVFDG VENMHLHWK+RELVK+
Sbjct: 576 SMVPAGPDYDQETITDEERVMFRKVGLRMKPYLPLGIRGVFDGVVENMHLHWKHRELVKL 635
Query: 425 IVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKR 484
+ K KT + A LE ESGG+LV+++K+SK +A++ YRGK+Y+RP TLRP+NLLTK
Sbjct: 636 MTKQKTLAFVEDTARLLEYESGGILVAIEKVSKEFALIYYRGKNYKRPITLRPRNLLTKG 695
Query: 485 KALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATEDD 544
KAL R + +QR EAL +H+ LE IEQM K G Q D D EDD
Sbjct: 696 KALKRHVAMQRHEALSQHITELEKT-------IEQMK--KELGMTQDSDVEDGGSIEEDD 746
Query: 545 D----------SEDEGDEAY 554
SEDE + Y
Sbjct: 747 HNQIDISELALSEDEDSDGY 766
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 377 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKK 436
++ DE R+ G+R++ + + + G+ + +E +H W+ ELV++ + +K
Sbjct: 184 TLEDELLRRLRREGMRVRERVSVPKAGLTEEVMEKIHKRWRKEELVRLKFHEELAKDMRK 243
Query: 437 IALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPST 474
+E +GG++ G M+VYRG DYQ P +
Sbjct: 244 AHEIVERRTGGLVT----WRSGSVMMVYRGIDYQGPDS 277
>gi|47900539|gb|AAT39274.1| unknown protein [Oryza sativa Japonica Group]
gi|50878415|gb|AAT85189.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 798
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 252/559 (45%), Positives = 345/559 (61%), Gaps = 59/559 (10%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
R+TGGL+IWRSG+ + +YRG +Y+ P K ++
Sbjct: 250 RRTGGLIIWRSGSVMVVYRGSNYKRPL---------------------------KSETLD 282
Query: 65 GNSLSA-AADKT-----AQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEK 118
GNS + AD T A P+ DS TQ + Q T+ + E E E +
Sbjct: 283 GNSSAVKGADGTLFIPDASSPTEHDSQGKDVNTQREIAARLNMQNTEDMTE--EELEFNQ 340
Query: 119 LLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLAR 178
+LD LGPR+ DW G LPVDAD+LP +PGY+ PFR+LP G+R TL E TNL++LAR
Sbjct: 341 MLDELGPRFVDWWGTGILPVDADLLPQTIPGYKTPFRLLPTGMRLTLTNAELTNLRKLAR 400
Query: 179 VLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLL 238
LP HFALGR+R QGLA A++KLWEKS + KIA+KRG+Q T ++ M E+IK LTGGTLL
Sbjct: 401 DLPCHFALGRNRNHQGLAAAIVKLWEKSLVVKIAVKRGIQNTNNKLMSEEIKNLTGGTLL 460
Query: 239 SRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKS- 297
RNK ++V YRGK+FL V AL ERE L K +Q+ EEQ R +P + +++ S
Sbjct: 461 LRNKYYIVIYRGKDFLPTSVAAALAEREELTKDIQNVEEQKR------CIPVVHSMDDSL 514
Query: 298 ---GTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLR 354
AGTL E +A +RWG+ + +E + + L ++LE KL+ A+ K+ R
Sbjct: 515 DGHALAGTLAEFQEAQARWGREVTAKEQEEMKEASSRSVKEKLFKRLEHKLSIAQAKIHR 574
Query: 355 AERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHL 414
AER LSK+E S+ A D E ITDEER +FR++GLR+KA+L +G RGVFDG +ENMHL
Sbjct: 575 AERLLSKIEASMVLANPSDDKEMITDEERSVFRRIGLRLKAYLPVGIRGVFDGVIENMHL 634
Query: 415 HWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPST 474
HWK+RE+VK+I K KT ++ A LE ESGG+LV++++++KGYA++ YRGK+Y+RP
Sbjct: 635 HWKHREVVKLITKQKTLPFVEETARLLEYESGGILVAIERVTKGYALIFYRGKNYRRPIN 694
Query: 475 LRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDK 534
+RP+NLLTK KAL R++ +QR EAL +H+A LE+N I QM G +
Sbjct: 695 IRPRNLLTKAKALKRAVAMQRHEALSQHIAELENN-------IRQMKLDLGI-------E 740
Query: 535 LDSAYATEDDDSEDEGDEA 553
+D Y + DSE+E +EA
Sbjct: 741 VDEEYEEDGSDSENENNEA 759
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 377 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKK 436
+I DEE R+LG+ ++ + + + GV E +H W+ ELV++ K
Sbjct: 184 TIEDEELRRLRRLGMTLRDRITVPKAGVTQAVTEKIHDAWRKSELVRLKFHEDLAHDMKT 243
Query: 437 IALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRP 472
+E +GG+++ G MVVYRG +Y+RP
Sbjct: 244 AHELVERRTGGLII----WRSGSVMVVYRGSNYKRP 275
>gi|297830494|ref|XP_002883129.1| EMB1865 [Arabidopsis lyrata subsp. lyrata]
gi|297328969|gb|EFH59388.1| EMB1865 [Arabidopsis lyrata subsp. lyrata]
Length = 846
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 237/513 (46%), Positives = 330/513 (64%), Gaps = 28/513 (5%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
R+TGG+VIWR+G+ + +YRG+ Y+ P V N+ + L VS A D+ + + + S
Sbjct: 308 RRTGGMVIWRAGSVMVVYRGLDYKGPPVISNQMAGPKETLFVPDVSSAGDEATNAKDNQS 367
Query: 65 GNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLG 124
S D ++P + E +EE E E LLD LG
Sbjct: 368 --PPSEIKDPIIKNP-------------IRKENMTEE-----------EAEFNSLLDSLG 401
Query: 125 PRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHF 184
PR+ +W G LPVDAD+LP +PGY+ PFR+LP G+RS L E TNL+++ + LP HF
Sbjct: 402 PRFQEWWGTGVLPVDADLLPPTIPGYKTPFRLLPTGMRSNLTNAEMTNLRKIGKTLPCHF 461
Query: 185 ALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDF 244
ALGR+R QGLA A++++WEKS IAKIA+KRG+Q T ++ M +++K LTGG LL RNK +
Sbjct: 462 ALGRNRNHQGLAAAILQIWEKSLIAKIAVKRGIQNTNNKLMADEVKALTGGVLLLRNKYY 521
Query: 245 LVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLK 304
+V YRGK+FL V L ER+ L K +QD EE+ R R V P + + AGTL
Sbjct: 522 IVIYRGKDFLPSSVAATLAERQELTKEIQDVEERVRNREIEAVQPVGDKV--PAEAGTLA 579
Query: 305 ETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEE 364
E +A +RWGK + H+E ++ EA +A +V++++ KL A+ K RAE+ LSK+E
Sbjct: 580 EFYEAQARWGKEITPDHREKMIEEASRVANARVVKRIQHKLNLAQSKFQRAEKLLSKIEA 639
Query: 365 SLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI 424
S+ P D E I++EER MFRK+GL+MKA+L LG RGVFDG +ENMHLHWK+RELVK+
Sbjct: 640 SMIPNGPDYDQEVISEEERAMFRKVGLKMKAYLPLGIRGVFDGVIENMHLHWKHRELVKL 699
Query: 425 IVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKR 484
I K K + A LE ESGGVLV+++K+ KG+A++ YRGK+Y+RP +LRP+NLLTK
Sbjct: 700 ISKQKNLAFVEDTARLLEYESGGVLVAIEKVPKGFALIYYRGKNYRRPISLRPRNLLTKA 759
Query: 485 KALARSIELQRQEALLKHVATLESNAGRLRSEI 517
KAL RSI +QR EAL +H++ LE +++SE+
Sbjct: 760 KALKRSIAMQRHEALSQHISELERTIEQMQSEL 792
Score = 39.3 bits (90), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 377 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKK 436
++ D E R+ G+ ++ + + + G+ +E ++ W+ ELV++ K
Sbjct: 242 TVEDSELRRLRRDGMYLRVRINIPKAGLTQAVMEKIYDTWRKEELVRLKFHEVLARDMKT 301
Query: 437 IALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTL 475
+E +GG+++ G MVVYRG DY+ P +
Sbjct: 302 AHEIVERRTGGMVI----WRAGSVMVVYRGLDYKGPPVI 336
>gi|125553229|gb|EAY98938.1| hypothetical protein OsI_20893 [Oryza sativa Indica Group]
Length = 801
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 252/559 (45%), Positives = 344/559 (61%), Gaps = 59/559 (10%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
R+TGGL+IWRSG+ + +YRG +Y+ P K ++
Sbjct: 253 RRTGGLIIWRSGSVMVVYRGSNYKRPL---------------------------KSETLD 285
Query: 65 GNSLSA-AADKT-----AQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEK 118
GNS + AD T A P+ DS TQ + Q T+ + E E E +
Sbjct: 286 GNSSAVKGADGTLFIPDASSPTEHDSQGKDVNTQREIAARLNMQNTEDMTE--EELEFNQ 343
Query: 119 LLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLAR 178
+LD LGPR+ DW G LPVDAD+LP +PGY+ PFR+LP G+R TL E TNL++LAR
Sbjct: 344 MLDELGPRFVDWWGTGILPVDADLLPQTIPGYKTPFRLLPTGMRLTLTNAELTNLRKLAR 403
Query: 179 VLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLL 238
LP HFALGR+R QGLA A++KLWEKS + KIA+KRG+Q T ++ M E+IK LTGGTLL
Sbjct: 404 DLPCHFALGRNRNHQGLAAAIVKLWEKSLVVKIAVKRGIQNTNNKLMSEEIKNLTGGTLL 463
Query: 239 SRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKS- 297
RNK ++V YRGK+FL V AL ERE L K +Q+ EEQ R +P + +++ S
Sbjct: 464 LRNKYYIVIYRGKDFLPTSVAAALAEREELTKDIQNVEEQKR------CIPVVHSMDDSL 517
Query: 298 ---GTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLR 354
AGTL E +A +RWG+ + +E + + L ++LE KL+ A+ K+ R
Sbjct: 518 DGHALAGTLAEFQEAQARWGREVTAKEQEEMKEASSRSVKEKLFKRLEHKLSIAQAKIHR 577
Query: 355 AERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHL 414
AER LSK+E S+ A D E ITDEER +FR++GLR+KA+L +G RGVFDG +ENMHL
Sbjct: 578 AERLLSKIEASMVLANPSDDKEMITDEERSVFRRIGLRLKAYLPVGIRGVFDGVIENMHL 637
Query: 415 HWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPST 474
HWK+RE+VK+I K KT ++ A LE ESGG+LV+++++ KGYA++ YRGK+Y+RP
Sbjct: 638 HWKHREVVKLITKQKTLPFVEETARLLEYESGGILVAIERVPKGYALIFYRGKNYRRPIN 697
Query: 475 LRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDK 534
+RP+NLLTK KAL R++ +QR EAL +H+A LE+N I QM G +
Sbjct: 698 IRPRNLLTKAKALKRAVAMQRHEALSQHIAELENN-------IRQMKLDLGI-------E 743
Query: 535 LDSAYATEDDDSEDEGDEA 553
+D Y + DSE+E +EA
Sbjct: 744 VDEEYEEDGSDSENENNEA 762
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 377 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKK 436
+I DEE R+LG+ ++ + + + GV E +H W+ ELV++ K
Sbjct: 187 TIEDEELRRLRRLGMTLRDRITVPKAGVTQAVTEKIHDAWRKSELVRLKFHEDLAHDMKT 246
Query: 437 IALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRP 472
+E +GG+++ G MVVYRG +Y+RP
Sbjct: 247 AHELVERRTGGLII----WRSGSVMVVYRGSNYKRP 278
>gi|15229636|ref|NP_188468.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
gi|11994102|dbj|BAB01105.1| unnamed protein product [Arabidopsis thaliana]
gi|17380904|gb|AAL36264.1| unknown protein [Arabidopsis thaliana]
gi|332642570|gb|AEE76091.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
Length = 848
Score = 447 bits (1149), Expect = e-122, Method: Compositional matrix adjust.
Identities = 236/517 (45%), Positives = 332/517 (64%), Gaps = 28/517 (5%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
R+TGG+VIWR+G+ + +YRG+ Y+ P V N+ + L VS A D+ + + + S
Sbjct: 308 RRTGGMVIWRAGSVMVVYRGLDYKGPPVISNQMAGPKETLFVPDVSSAGDEATNAKDNQS 367
Query: 65 GNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLG 124
A +DP + + E +EE E E LLD LG
Sbjct: 368 -------APLVIKDP--------IIKNPIRKENMTEE-----------EVEFNSLLDSLG 401
Query: 125 PRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHF 184
PR+ +W G LPVDAD+LP +PGY+ PFR+LP G+RS L E TNL+++ + LP HF
Sbjct: 402 PRFQEWWGTGVLPVDADLLPPTIPGYKTPFRLLPTGMRSNLTNAEMTNLRKIGKTLPCHF 461
Query: 185 ALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDF 244
ALGR+R QGLA A++++WEKS IAKIA+KRG+Q T ++ M +++K LTGG LL RNK +
Sbjct: 462 ALGRNRNHQGLAAAILQIWEKSLIAKIAVKRGIQNTNNKLMADEVKTLTGGVLLLRNKYY 521
Query: 245 LVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLK 304
+V YRGK+FL V L ER+ L K +QD EE+ R R V P + + AGTL
Sbjct: 522 IVIYRGKDFLPSSVAATLAERQELTKEIQDVEERVRNREIEAVQPVGDKV--PAEAGTLA 579
Query: 305 ETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEE 364
E +A +RWGK + H+E ++ EA +A +V++++ KL A+ K RAE+ LSK+E
Sbjct: 580 EFYEAQARWGKEITPDHREKMIEEASRVANARVVKRIQHKLNLAQSKFQRAEKLLSKIEA 639
Query: 365 SLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI 424
S+ P D E I++EER MFRK+GL+MKA+L +G RGVFDG +ENMHLHWK+RELVK+
Sbjct: 640 SMIPNGPDYDQEVISEEERAMFRKVGLKMKAYLPIGIRGVFDGVIENMHLHWKHRELVKL 699
Query: 425 IVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKR 484
I K K ++ A LE ESGGVLV+++K+ KG+A++ YRGK+Y+RP +LRP+NLLTK
Sbjct: 700 ISKQKNQAFVEETARLLEYESGGVLVAIEKVPKGFALIYYRGKNYRRPISLRPRNLLTKA 759
Query: 485 KALARSIELQRQEALLKHVATLESNAGRLRSEIEQMN 521
KAL RSI +QR EAL +H++ LE +++S++ N
Sbjct: 760 KALKRSIAMQRHEALSQHISELERTIEQMQSQLTSKN 796
Score = 39.7 bits (91), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 377 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKK 436
++ D E R+ G+ ++ + + + G+ +E ++ W+ ELV++ K
Sbjct: 242 TVEDSELRRLRRDGMYLRVRINIPKAGLTQAVMEKIYDTWRKEELVRLKFHEVLARDMKT 301
Query: 437 IALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTL 475
+E +GG+++ G MVVYRG DY+ P +
Sbjct: 302 AHEIVERRTGGMVI----WRAGSVMVVYRGLDYKGPPVI 336
>gi|224118814|ref|XP_002317913.1| predicted protein [Populus trichocarpa]
gi|222858586|gb|EEE96133.1| predicted protein [Populus trichocarpa]
Length = 806
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 253/568 (44%), Positives = 354/568 (62%), Gaps = 55/568 (9%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
R+TGGLVIWR+G+ + ++RG +Y+ P +L Q D++
Sbjct: 266 RRTGGLVIWRAGSVMVVFRGTNYQGPPSKL----------------QPADRE-------- 301
Query: 65 GNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVR-------EVKYEDEVE 117
G++L D S+ DS V N+ T+S E+ +R + E E+
Sbjct: 302 GDALFVP------DVSSTDS---VMTRSSNIATSSSEKSKLVMRITEPTENMTEEEAELN 352
Query: 118 KLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLA 177
LLD LGPR+ +W G LPVDAD+LP VP Y+ PFR+LP G+R+ L E TN+++LA
Sbjct: 353 SLLDDLGPRFEEWWGTGLLPVDADLLPPKVPCYKTPFRLLPVGMRARLTNAEMTNMRKLA 412
Query: 178 RVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTL 237
+ LP HFALGR+R QGLAVA++KLWEKS +AKIA+KRG+Q T ++ M +++K LTGG L
Sbjct: 413 KALPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRGIQNTNNKLMADELKMLTGGVL 472
Query: 238 LSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKS 297
L RNK ++V +RGK+FL V AL ER+ + K +QD EE+ R S PS E E
Sbjct: 473 LLRNKYYIVIFRGKDFLPQSVAAALAERQEVTKQIQDVEERVR-SNSVEAAPSGED-EGK 530
Query: 298 GTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAER 357
AGTL E +A +RWG+ + +E ++ EA + A LV++ E KLA A+ K LRAE
Sbjct: 531 ALAGTLAEFYEAQARWGRDISTEEREKMIEEASKAKTARLVKRTEHKLAIAQAKKLRAES 590
Query: 358 ALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWK 417
LSK+E ++ P+ D E+I++EER MFR++GLRMKA+L LG RGVFDG +ENMHLHWK
Sbjct: 591 LLSKIETTMVPSGPDFDQETISEEERVMFRRVGLRMKAYLPLGIRGVFDGVIENMHLHWK 650
Query: 418 YRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRP 477
+RELVK+I K KT + A LE ESGGVLV+++++ KG+A++ YRGK+Y+RP ++RP
Sbjct: 651 HRELVKLISKQKTLAFVEDTAKLLEYESGGVLVAIERVPKGFALIYYRGKNYRRPISIRP 710
Query: 478 KNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEI----EQMNSVKGTGDE---- 529
+NLLTK KAL RS+ +QR EAL +H+ LE N + E+ E+ N + +E
Sbjct: 711 RNLLTKAKALKRSVAMQRHEALSQHIFELEKNIEEMVKEMGLSKEEENENNWSSEEHAPL 770
Query: 530 ----QLYDKLDSAYATEDDDSEDEGDEA 553
+L D A+ TE DSED+ +E
Sbjct: 771 NNVSKLTQSEDKAFFTE-SDSEDDYNEG 797
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 377 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKK 436
+I DEE R++G+ ++ + + + G+ + +EN+H W+ ELV++ K
Sbjct: 200 TIEDEELRRLRRMGMFIRERISIPKAGITNAVLENIHDRWRKEELVRLKFHEVLAHDMKT 259
Query: 437 IALALEAESGGVLVSVDKISKGYAMVVYRGKDYQ-RPSTLRP 477
+E +GG+++ G MVV+RG +YQ PS L+P
Sbjct: 260 AHEIVERRTGGLVI----WRAGSVMVVFRGTNYQGPPSKLQP 297
>gi|5123569|emb|CAB45335.1| putative protein [Arabidopsis thaliana]
gi|7269874|emb|CAB79733.1| putative protein [Arabidopsis thaliana]
Length = 776
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 236/441 (53%), Positives = 308/441 (69%), Gaps = 19/441 (4%)
Query: 115 EVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQ 174
E+ LLD +GPR+ DW GC P PVDAD+LPG V GY+ PFR+LP GV+ L+ E T ++
Sbjct: 347 ELNDLLDEVGPRFHDWTGCAPFPVDADLLPGYVEGYRCPFRILPQGVKPCLSNTEMTEMR 406
Query: 175 RLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTG 234
RLAR PPHFALGRSR+LQGLA AM+KLW KS+IAKIA+KRGV+ T +ERM E++K+LT
Sbjct: 407 RLARTSPPHFALGRSRELQGLAKAMVKLWAKSAIAKIAIKRGVENTRNERMAEELKRLTR 466
Query: 235 GTLLSRNKDFLVFYRGKNFLSPDVTEALQERER-LAKSLQDEEEQARLRAS--AFVLPSI 291
G L+SRNK+++VFYR V EAL ER++ + + LQ +E+QAR AS A +
Sbjct: 467 GVLVSRNKEYIVFYR--------VAEALTERQKEITEVLQAKEDQAREMASTRATLTSQA 518
Query: 292 ETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERK 351
++ + AGTL ET+ A+SRW E L RE+ + A L++ LE +L ++K
Sbjct: 519 KSPKTQLLAGTLAETIAASSRWAPNASSVDIEELKRESASIKRAALIRDLELRLLYGKQK 578
Query: 352 LLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVEN 411
L RAER L+KV++ L P+E D E IT+EER ++RK+GL M FLLLGRR V+DGT+EN
Sbjct: 579 LRRAERDLAKVQKDLDPSELPTDSEIITEEERLLYRKIGLSMDPFLLLGRREVYDGTIEN 638
Query: 412 MHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQR 471
MHLHWK+RELVK+IV+ K+ Q K IA++LEAESGGVLVSVDK KGYA+++YRGK+YQ
Sbjct: 639 MHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVDKTMKGYAIILYRGKNYQM 698
Query: 472 PSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQ- 530
P LRP NLLT++KA ARSIELQR+EAL HVA LE L++ + + DE+
Sbjct: 699 PFRLRPSNLLTRKKAFARSIELQRREALKYHVADLEERIELLKTGQDDDMETRNKSDEEE 758
Query: 531 --LYDKLDSAYATEDDDSEDE 549
LY ++D E D S DE
Sbjct: 759 ENLYLRVD-----ESDFSSDE 774
>gi|357496109|ref|XP_003618343.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355493358|gb|AES74561.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 1096
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 257/613 (41%), Positives = 368/613 (60%), Gaps = 52/613 (8%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
RKTGGLV+WRSG+ + LYRG+ Y+ P L+ + + E A + D+ I ++ + S
Sbjct: 216 RKTGGLVVWRSGSKIILYRGIDYKYPYF-LSDEVLREEESDALQPMDSDDESIDERKTHS 274
Query: 65 GNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLG 124
SA A SN + V Q E + +EV+ LL+GLG
Sbjct: 275 SEMSSATH---AGQSSNIKTVKPALVQGVGTPNRVRFQ---LPGEAELLEEVDSLLEGLG 328
Query: 125 PRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHF 184
PR+TDW G DP+PVDAD+LP ++PG++PPFR+LPYGV+S L E T L+RL R LP HF
Sbjct: 329 PRFTDWWGYDPVPVDADLLPAVIPGFRPPFRLLPYGVQSKLTDDEMTTLKRLGRTLPCHF 388
Query: 185 ALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDF 244
ALGR+ +LQG+A A+IK WE+ I IA+KRGVQ T++ +M E+IK LTGGTLLSRNK+
Sbjct: 389 ALGRNWKLQGVAAAIIKFWERCEIVNIAVKRGVQNTSNRKMAEEIKYLTGGTLLSRNKEV 448
Query: 245 LVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLK 304
+V YRGK+FL V+ A+++R + K+ ++ E ++ + AS+ + K T K
Sbjct: 449 IVIYRGKDFLPAAVSSAIKKRWKAVKNKENAENRSAITASS------HSERKHMTFIKDK 502
Query: 305 ETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEE 364
ET++ + L+ +A+ +Q+ KLA+A K +AE+ L +E+
Sbjct: 503 ETIE--------------KPLLMKAKA-----AIQRTSFKLAQALEKKEKAEKLLESLEK 543
Query: 365 SLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI 424
E + D ESIT+EER+M R++GL+MK FLLLGRRGVFDGTVENMHLHWKYRELVKI
Sbjct: 544 DESLQEEEIDKESITEEERYMLRRIGLKMKPFLLLGRRGVFDGTVENMHLHWKYRELVKI 603
Query: 425 IVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKR 484
I ++ + A + A LEAESGG+LV+V++++KGYA++VYRGK+Y RP +LRP+ LL K+
Sbjct: 604 ICNQESVEYAHQTARTLEAESGGILVAVERVNKGYAIIVYRGKNYSRPDSLRPRTLLNKK 663
Query: 485 KALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATEDD 544
+AL RSIE QR+EAL HV L+ N L+ ++ + + EQ+ +L S ATE+
Sbjct: 664 QALKRSIEAQRREALKLHVLKLDKNINELKHQMVKDEA----SSEQIAKELRSDLATENS 719
Query: 545 DSEDEGD------EAYLEMYAGGNDNEDEIDN----------STHNLEMESDFPYHAQDQ 588
E D E ++E+ G + + E ++ +T N E+ Q
Sbjct: 720 PEEASVDNQQPIQEQHIELIGSGGECQGEPESLTGLVHQERQATKNSLEEASVDNQQPIQ 779
Query: 589 ESETELMDSESEA 601
E EL+D+ E
Sbjct: 780 EQHIELIDTGEEC 792
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 377 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKK 436
S+TD E R+LG +MK + +G+ GV +G V +H W+ E+V+++ + K+
Sbjct: 150 SLTDGEILRLRELGYQMKQKIKVGKAGVTEGIVNGIHERWRRSEVVRVVCEDLCRINMKR 209
Query: 437 IALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTL 475
LE ++GG++V G +++YRG DY+ P L
Sbjct: 210 THDILERKTGGLVV----WRSGSKIILYRGIDYKYPYFL 244
>gi|168024308|ref|XP_001764678.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683972|gb|EDQ70377.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 625
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 247/522 (47%), Positives = 336/522 (64%), Gaps = 45/522 (8%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
R TGGLVIWRSG+A +YRG Y PSV+ + +R S++ D++ +QI
Sbjct: 98 RLTGGLVIWRSGSAAVVYRGKDYVHPSVREREEREERERRKLLSLNLDEDEEREEQI--- 154
Query: 65 GNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLG 124
DS + V V E ++QE D VE++LDGLG
Sbjct: 155 ------------------DSTSTV---SVEREAYLKKQENDL-------RMVEEILDGLG 186
Query: 125 PRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHF 184
PRY DW G P+PVD D+L ++ PFR+LPYGV+ L E T L+ LAR +PPH
Sbjct: 187 PRYADWTGRRPVPVDGDLLLSSDFEFKRPFRLLPYGVKPKLNNFELTELRHLARPIPPHI 246
Query: 185 ALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDF 244
LG++R L G+A A++KLWE+S I KI +KRGVQ T++ERM E++K+LTGGTLLSR+K+F
Sbjct: 247 VLGKNRGLDGVAAAIVKLWERSEIVKIGVKRGVQNTSNERMAEELKRLTGGTLLSRDKEF 306
Query: 245 LVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGT--AGT 302
+VF+RGK+FL P V AL+ER+++AK+LQ+EEE+ R+ + + +E G GT
Sbjct: 307 IVFHRGKDFLPPAVQAALEERDQMAKALQEEEERFRMGGRSRPVQVVEETRYQGVYKVGT 366
Query: 303 LKETLDANSRWGKRL--DDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALS 360
L+E L+ ++W L D++ KE + A R+ A ++ KL A +K+ RA+ L+
Sbjct: 367 LEEALETRAKWEAWLDSDEARKERIA--ARKRKRAQATDRIRSKLNLALKKMERAQLELN 424
Query: 361 KVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRE 420
KVE PA D E ++D ER+M+RKLGL+MKAFLLLGRRGVF GTVENMHLHWKYRE
Sbjct: 425 KVEAKTTPANVTLDKEHLSDGERYMYRKLGLKMKAFLLLGRRGVFSGTVENMHLHWKYRE 484
Query: 421 LVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNL 480
LVKI+VK + +A++IA LE ESGG+LV + SKG A+V+YRGK+YQRPS LRP++L
Sbjct: 485 LVKILVKT-SLPEAERIAKILENESGGILVDIITTSKGQAIVMYRGKNYQRPSELRPRHL 543
Query: 481 LTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNS 522
LTKR+AL RS+E+QR E+L KH+ L+ EIE M +
Sbjct: 544 LTKRQALKRSLEMQRMESLEKHIRV-------LKKEIETMQA 578
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 377 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKK 436
+I D E R LGL+++ L +GR GV G VE +H W+ E+ K+ KK
Sbjct: 32 TIPDFELKRLRTLGLQLQGRLKIGRLGVTPGIVEAIHERWRTCEIAKVKCDAPLSMNMKK 91
Query: 437 IALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPST 474
LE +GG+++ G A VVYRGKDY PS
Sbjct: 92 AHEDLERLTGGLVI----WRSGSAAVVYRGKDYVHPSV 125
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 169 EATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVED 228
E L+ L L +GR G+ A+ + W IAK+ + + ++ ED
Sbjct: 37 ELKRLRTLGLQLQGRLKIGRLGVTPGIVEAIHERWRTCEIAKVKCDAPLSMNM-KKAHED 95
Query: 229 IKKLTGGTLLSRNKDFLVFYRGKNFLSPDV 258
+++LTGG ++ R+ V YRGK+++ P V
Sbjct: 96 LERLTGGLVIWRSGSAAVVYRGKDYVHPSV 125
>gi|357128578|ref|XP_003565949.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 782
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 235/513 (45%), Positives = 325/513 (63%), Gaps = 25/513 (4%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
R+TGGL+IWR+G+ + +YRG +Y P+ K L +S +T K + +
Sbjct: 245 RRTGGLIIWRAGSVMVVYRGNNYTRPT--------KSQTLDGTS---STRKGEDNTLFIP 293
Query: 65 GNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLG 124
S A D +D + A NL + D E E E ++LD LG
Sbjct: 294 DASSPAENDNQGKD---------LTAQHDNLSRLNIHNTDDMTEE---ELEFNQMLDELG 341
Query: 125 PRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHF 184
PR+ DW G LPVDAD+LP +PGY+ PFR+LP G+R++L E TNL++LAR LP HF
Sbjct: 342 PRFVDWWGTGILPVDADLLPQTIPGYKAPFRLLPTGMRTSLTNAELTNLRKLARSLPCHF 401
Query: 185 ALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDF 244
ALGR+R QGLA A+IKLWEKS + KIA+KRG+Q T +E M ++IKKLTGGTLL RNK F
Sbjct: 402 ALGRNRNHQGLASAIIKLWEKSLVVKIAVKRGIQNTNNELMSDEIKKLTGGTLLLRNKYF 461
Query: 245 LVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLK 304
+V YRGK+FL V AL ERE L K +Q+ EEQ R + + + GTL
Sbjct: 462 IVIYRGKDFLPQSVAVALAEREELTKDIQNVEEQRR--CTPIAHSPEDGFDGHALVGTLA 519
Query: 305 ETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEE 364
E +A +RWG+ + +E + + + ++LE KL+ A+ K+ RA + LSK+E
Sbjct: 520 EFQEAQARWGRDVTSKEQEEMKEASSRLEKEKIFRRLEHKLSIAQAKIHRAGKLLSKIEA 579
Query: 365 SLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI 424
S+ A D E ITDEER +FR++GL+MKA+L +G RGVFDG +ENMHLHWK+RE+VK+
Sbjct: 580 SMILANPSDDREMITDEERSVFRRIGLKMKAYLPVGIRGVFDGVIENMHLHWKHREVVKL 639
Query: 425 IVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKR 484
I K KT + A LE ESGG+LV+V+++ KGYA++ YRGK+Y+RP +RP+NLLTK
Sbjct: 640 ITKQKTLAFVNETARLLEYESGGILVAVERVPKGYALIFYRGKNYRRPINIRPRNLLTKA 699
Query: 485 KALARSIELQRQEALLKHVATLESNAGRLRSEI 517
KAL R++ +QR EAL +H+A LESN +++ ++
Sbjct: 700 KALKRAVAMQRHEALSQHIAQLESNMKQMKFDL 732
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 377 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKK 436
++ D E R +G+ ++ + + + GV E +H W+ ELV++ + K
Sbjct: 179 TMDDAELRRLRGMGMTLRDRITVPKAGVTQAVTEKIHDAWRKSELVRLKFHEDLANDMKT 238
Query: 437 IALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPS 473
+E +GG+++ G MVVYRG +Y RP+
Sbjct: 239 AHELVERRTGGLII----WRAGSVMVVYRGNNYTRPT 271
>gi|255552728|ref|XP_002517407.1| conserved hypothetical protein [Ricinus communis]
gi|223543418|gb|EEF44949.1| conserved hypothetical protein [Ricinus communis]
Length = 1009
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 238/517 (46%), Positives = 322/517 (62%), Gaps = 31/517 (5%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
RKTGGLV+WR+G+ + LYRGV+Y P L+ + + +S+ D H S
Sbjct: 223 RKTGGLVVWRAGSKIVLYRGVNYIYPYF-LSDNTTEND----TSIDAVQDTHKHND-SDK 276
Query: 65 GNSLSAAADK---TAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLD 121
S S++ D + P+N V + E + +EV+ LL+
Sbjct: 277 IKSCSSSVDGVKFSGPSPTN----KAVRPALIQGVGLPNRVRFQLPGEAQLAEEVDSLLE 332
Query: 122 GLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLP 181
GLGPR++DW G +PLPVDAD+LP IVPGYQ PFR+LPYG++ L E T L+RL R LP
Sbjct: 333 GLGPRFSDWWGYEPLPVDADLLPAIVPGYQKPFRLLPYGIKPILTNDEMTTLKRLGRPLP 392
Query: 182 PHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRN 241
HF LGR+R+LQGLA ++IKLWEK IAKIA+KRGVQ T SE M E++K+LTGGTLLSR+
Sbjct: 393 CHFVLGRNRKLQGLAASIIKLWEKCEIAKIAVKRGVQNTNSEMMAEELKRLTGGTLLSRD 452
Query: 242 KDFLVFYRGKNFLSPDVTEALQERE----RLAKSLQDEEEQARLRASAFVLPSIETIEKS 297
++F+V YRGK+FL V+ A++ER +AK D A A E +E
Sbjct: 453 REFIVLYRGKDFLPSAVSSAIKERRNHVFNVAKERTDNSTSAETAKEA------EDVEDG 506
Query: 298 GTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAER 357
+ ++ N+ L K + +EA R L LEKK +A +
Sbjct: 507 TSNSGSQDEFHGNNEQSYDLSKQRKLSFTKEAIKRTSIRLSMALEKK--------AKAVK 558
Query: 358 ALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWK 417
L+++E S + + D E ITDEER+M RK+GL+MK FLL+GRRGVFDGT+ENMHLHWK
Sbjct: 559 LLAEIENSEMSQQPEIDKEGITDEERYMLRKVGLKMKPFLLIGRRGVFDGTIENMHLHWK 618
Query: 418 YRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRP 477
YRELVKII K ++ + ++A +LEAESGG+LV+V+++SKGYA+VVYRGK+YQRP+ LRP
Sbjct: 619 YRELVKIICKERSLNAVHEVAQSLEAESGGILVAVERVSKGYAIVVYRGKNYQRPALLRP 678
Query: 478 KNLLTKRKALARSIELQRQEALLKHVATLESNAGRLR 514
LL+KR+A+ RS+E QR+E+L HV L N L+
Sbjct: 679 PTLLSKREAMKRSLEAQRRESLKLHVLRLTRNINDLK 715
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 377 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKK 436
S+++EE R++G+ K L +G+ G+ +G V +H W+ E+VKI+ + K+
Sbjct: 157 SLSEEELRRLRRIGIAEKRKLKVGKAGITEGIVNGIHERWRRSEVVKIVCEDLCRMNMKR 216
Query: 437 IALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTL 475
LE ++GG++V G +V+YRG +Y P L
Sbjct: 217 THDLLERKTGGLVV----WRAGSKIVLYRGVNYIYPYFL 251
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 144/322 (44%), Gaps = 30/322 (9%)
Query: 164 TLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSE 223
+L+ +E L+R+ +G++ +G+ + + W +S + KI + ++ +
Sbjct: 157 SLSEEELRRLRRIGIAEKRKLKVGKAGITEGIVNGIHERWRRSEVVKIVCEDLCRMNM-K 215
Query: 224 RMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSP-DVTEALQERERLAKSLQDEEEQARLR 282
R + +++ TGG ++ R +V YRG N++ P +++ E + ++QD +
Sbjct: 216 RTHDLLERKTGGLVVWRAGSKIVLYRGVNYIYPYFLSDNTTENDTSIDAVQDTHKHNDSD 275
Query: 283 ASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHA-YLVQKL 341
S++ ++ SG + T K A + G L + + L EA++ L++ L
Sbjct: 276 KIKSCSSSVDGVKFSGPSPTNKAVRPALIQ-GVGLPNRVRFQLPGEAQLAEEVDSLLEGL 334
Query: 342 EKKLA--------RAERKLLRA-----ERALSKVEESLKPAERQADPESITDEERFMFRK 388
+ + + LL A ++ + +KP +T++E ++
Sbjct: 335 GPRFSDWWGYEPLPVDADLLPAIVPGYQKPFRLLPYGIKPI--------LTNDEMTTLKR 386
Query: 389 LGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFD-QAKKIALALEAESGG 447
LG + +LGR G ++ W+ E+ KI VK + ++ +A L+ +GG
Sbjct: 387 LGRPLPCHFVLGRNRKLQGLAASIIKLWEKCEIAKIAVKRGVQNTNSEMMAEELKRLTGG 446
Query: 448 VLVSVDKISKGYAMVVYRGKDY 469
L+S D+ +V+YRGKD+
Sbjct: 447 TLLSRDR----EFIVLYRGKDF 464
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Query: 370 ERQADPESITDEERFMFRKLGLRMK--AFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK 427
E Q+ +++ +R M RK L+MK L +GR + G + + H+K L + VK
Sbjct: 853 EMQSSTICLSNRDRLMLRKQALKMKNRPVLAVGRSNIVTGVAKTIKAHFKKYPLAIVNVK 912
Query: 428 VKT-FDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRG 466
+ +++ LE +GGVLVS + +++YRG
Sbjct: 913 GRAKGTSVQEVVFQLEQATGGVLVSQEP----SKVILYRG 948
Score = 38.9 bits (89), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%)
Query: 182 PHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRN 241
P A+GRS + G+A + ++K +A + +K + T+ + +V +++ TGG L+S+
Sbjct: 880 PVLAVGRSNIVTGVAKTIKAHFKKYPLAIVNVKGRAKGTSVQEVVFQLEQATGGVLVSQE 939
Query: 242 KDFLVFYRG 250
++ YRG
Sbjct: 940 PSKVILYRG 948
>gi|357500379|ref|XP_003620478.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355495493|gb|AES76696.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 820
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 235/527 (44%), Positives = 327/527 (62%), Gaps = 37/527 (7%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
R+TGGLV WR+G+ + +YRG +Y+ P+ P V + + +S
Sbjct: 278 RRTGGLVTWRAGSVMIVYRGKNYQGPAS------------PELDVKEGDGFFVP---DVS 322
Query: 65 GNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLG 124
SLS D A S N N+E + E E E LLD LG
Sbjct: 323 SGSLSKTKDSNATS-----SLENSEQVGRNVELPEKMTEE--------EAEYNALLDDLG 369
Query: 125 PRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHF 184
PR+ W G PVDAD+LP VPGY+ P+R+LP G+RS L E T+L+++A+ LP HF
Sbjct: 370 PRFVGWWGTGIPPVDADLLPREVPGYKTPYRLLPTGMRSRLTGAEMTDLRKIAKSLPCHF 429
Query: 185 ALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDF 244
ALGR+R QGLA A++KLWE+S IAKIA+K G+Q T ++ M +++ LTGGTLL RN+ +
Sbjct: 430 ALGRNRNHQGLACAILKLWERSLIAKIAVKPGIQNTNNKLMADELSTLTGGTLLLRNRFY 489
Query: 245 LVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLK 304
+V YRGK+F+ V L ER+ L K +QD EE+ R +A PS++ E + AG+L
Sbjct: 490 IVIYRGKDFVPTGVAAVLAERQELTKQVQDVEEKVRCKA-VVATPSVQG-EATAPAGSLA 547
Query: 305 ETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEE 364
E +A +RWG+ + E +++EA ++ LV+++E K++ A KL RAER L+K+E
Sbjct: 548 EFYEAQARWGRDVSSEEHERMIKEATKAKNVKLVKQIEHKISLAANKLHRAERLLAKIES 607
Query: 365 SLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI 424
S+ P D E+ITDEER +FR++GLRMKA+L LG RGVFDG +ENMHLHWK+RELVK+
Sbjct: 608 SMVPVGPDYDQETITDEERVVFRQIGLRMKAYLQLGIRGVFDGVIENMHLHWKHRELVKL 667
Query: 425 IVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKR 484
+ K K + A LE ESGG+LV+++K+SK +A++ YRGK+Y+RP TLRP+NLLTK
Sbjct: 668 VTKQKNRAFVEDTARLLEYESGGILVAIEKVSKEFAIIYYRGKNYKRPLTLRPRNLLTKA 727
Query: 485 KALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQL 531
KAL RS+ + R EAL H+ LE+ IEQM G D++L
Sbjct: 728 KALKRSVAMLRHEALSNHITELETT-------IEQMKQELGLSDDEL 767
Score = 42.7 bits (99), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 377 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKK 436
++ DE R+ G+ ++ + + + G+ +E +H W+ +ELV++ + +
Sbjct: 212 TLEDELLRRLRREGMHLRERVSVPKAGLTQEVMEKIHESWRKKELVRLKFHEELAKNMRI 271
Query: 437 IALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPST 474
+E +GG++ G M+VYRGK+YQ P++
Sbjct: 272 AHQIVERRTGGLVT----WRAGSVMIVYRGKNYQGPAS 305
>gi|30678323|ref|NP_186786.2| CRM family member 2 [Arabidopsis thaliana]
gi|22531018|gb|AAM97013.1| unknown protein [Arabidopsis thaliana]
gi|37202002|gb|AAQ89616.1| At3g01370 [Arabidopsis thaliana]
gi|332640136|gb|AEE73657.1| CRM family member 2 [Arabidopsis thaliana]
Length = 1011
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 255/630 (40%), Positives = 364/630 (57%), Gaps = 59/630 (9%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
KTGGLVIWRSG+ + LYRGV+Y+ P ++ + ASS+ Q KQ S++
Sbjct: 232 KTGGLVIWRSGSKILLYRGVNYQYPYFVSDRDLAHEAASGASSMDQGVVDSREKQ-SIAE 290
Query: 66 NSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGP 125
+S + +K + P + + L EV+ +E ++LL+GLGP
Sbjct: 291 SSAPSITNKMVK-PMLTQGVGSPDKVRFQLPG-----------EVQLVEEADRLLEGLGP 338
Query: 126 RYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFA 185
R+TDW DPLPVD D+LP +VP Y+ PFR+LPYGV L E T ++RL R LP HFA
Sbjct: 339 RFTDWWAYDPLPVDGDLLPAVVPDYRRPFRLLPYGVSPKLTDDEMTTIRRLGRPLPCHFA 398
Query: 186 LGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFL 245
LGR+R LQGLAVA++KLWEK +AKIA+KRGVQ T SE M E++K LTGGTL+SR+KDF+
Sbjct: 399 LGRNRNLQGLAVAIVKLWEKCELAKIAVKRGVQNTNSELMAEELKWLTGGTLISRDKDFI 458
Query: 246 VFYRGKNFLSPDVTEALQERERL----------AKSLQDEEEQARLRASAFVLPSIETIE 295
V YRGK+FL V+ A++ER R L + EE+ + RA
Sbjct: 459 VLYRGKDFLPSAVSSAIEERRRQTMIMENSSVHGNKLTENEEEIKPRA------------ 506
Query: 296 KSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRA 355
+KE ++ ++ K +H+ ++ + +++K KL+ A K A
Sbjct: 507 -------VKEDIELEAKDQKDHIQTHQ---MKSRQRNSPEAILEKTSMKLSMALEKKANA 556
Query: 356 ERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLH 415
E+ L+ +E P D E IT++E++M RK+GL+MK FLLLGRRGVFDGT+ENMHLH
Sbjct: 557 EKVLADLENRESPQLSDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLH 616
Query: 416 WKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTL 475
WKYRELVKII + + A K+A LEAESGG+LV+V+ +SKGYA++VYRGK+Y+RP L
Sbjct: 617 WKYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVYRGKNYERPQCL 676
Query: 476 RPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKL 535
RP+ LL+KR+AL RS+E QR+++L HV L +N L ++ + ++ T + +
Sbjct: 677 RPQTLLSKREALKRSVEAQRRKSLKLHVLKLSNNIEELNRQLVEDSATNETWSDGESSNM 736
Query: 536 DSAYATEDDDSEDE--------GDEAYLEMYAGG-----NDNEDEIDN-STHNLEMESDF 581
TE+ +E E G + L + + G +D+E E+D +T + E + D
Sbjct: 737 MVEEETENQHTEPEKAREKIELGYSSDLSVPSSGEENWEDDSEGEVDPLTTSSQEYQEDE 796
Query: 582 PYHAQDQESETELMDSESEAYTVHSTYCAS 611
A Q E +DS + T A+
Sbjct: 797 SESASSQRHEGNSLDSTANLSVFAETGSAN 826
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 18/135 (13%)
Query: 338 VQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFL 397
++++ KK ERK + E+ S E +L PAE + R +G+R+ L
Sbjct: 140 LKRVWKKETEMERK--KEEKVPSLAELTLPPAELR------------RLRTVGIRLTKKL 185
Query: 398 LLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISK 457
+G+ G+ +G V +H W+ E+VKI + + K+ LE ++GG+++
Sbjct: 186 KIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVLETKTGGLVI----WRS 241
Query: 458 GYAMVVYRGKDYQRP 472
G +++YRG +YQ P
Sbjct: 242 GSKILLYRGVNYQYP 256
Score = 42.4 bits (98), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 165 LARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSER 224
+ RK+A +++ P FA+GRS + GLA + ++K+ +A + +K T+ +
Sbjct: 882 ILRKQALKMKKR-----PPFAVGRSNVVTGLARTLKMHFQKNPLAIVNVKGRANGTSVQE 936
Query: 225 MVEDIKKLTGGTLLSRNKDFLVFYRG 250
++ +K+ TG L+S+ ++ YRG
Sbjct: 937 VIAKLKEETGALLVSQEPSKVILYRG 962
>gi|255582755|ref|XP_002532154.1| conserved hypothetical protein [Ricinus communis]
gi|223528164|gb|EEF30228.1| conserved hypothetical protein [Ricinus communis]
Length = 745
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 234/494 (47%), Positives = 318/494 (64%), Gaps = 28/494 (5%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
R+TGGLVIWR+G+ + +YRG SYE P + + + L VS A + +M
Sbjct: 275 RRTGGLVIWRAGSVMVVYRGSSYEGPPSKTQPVNREGDALFIPDVSSAGSE------TMK 328
Query: 65 GNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLG 124
G++++ +A A + L + D E E E + LD LG
Sbjct: 329 GDNVAPSA-----------------AEKRELAMRRLDHSKDMTEE---EIEYDSFLDSLG 368
Query: 125 PRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHF 184
PR+ +W G LPVDAD+LP +P Y+ PFR+LP G+RS L E TNL++LA+ LP HF
Sbjct: 369 PRFEEWWGTGILPVDADLLPPKIPDYKTPFRLLPTGMRSRLTNAEMTNLRKLAKKLPCHF 428
Query: 185 ALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDF 244
ALGR+R QGLA ++K+WEKS +AKIA+KRG+Q T ++ M +++K LTGG LL RNK +
Sbjct: 429 ALGRNRNHQGLASTILKVWEKSLVAKIAVKRGIQNTNNKLMADELKMLTGGVLLLRNKYY 488
Query: 245 LVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLK 304
+V YRGK+FL V AL ER+ L K +QD EE+ R R V PS E E AGTL
Sbjct: 489 IVIYRGKDFLPTSVAAALTERQELTKKIQDVEEKVRSREIEAV-PSKEE-EGKPLAGTLA 546
Query: 305 ETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEE 364
E +A SRWGK +E ++ + + A +V+++E KLA A+ K LRAER L+K+E
Sbjct: 547 EFYEAQSRWGKDTSAEDREKMIEDDTRAKRARIVKRIEHKLAVAQAKKLRAERLLAKIEV 606
Query: 365 SLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI 424
S+ P+ D E+ITDEER +FR++GLRMKA+L LG RGVFDG +ENMHLHWK+RELVK+
Sbjct: 607 SMLPSGPDYDQETITDEERAVFRRIGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKL 666
Query: 425 IVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKR 484
I K KT A+ A LE ESGG+LV+++++ KG+A++ YRGK+Y+RP LRP+NLLTK
Sbjct: 667 ISKQKTLAFAEDTARLLEYESGGILVAIERVPKGFALIYYRGKNYRRPINLRPRNLLTKA 726
Query: 485 KALARSIELQRQEA 498
KAL RS+ +QR E
Sbjct: 727 KALKRSVAMQRHEV 740
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 377 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKK 436
+I DEE R++G+ ++ + + + G+ VE +H W+ ELV++ K
Sbjct: 209 TIEDEELRRLRRMGMFLRERVNVPKAGLTKEVVEKIHDKWRKNELVRLKFHEVLAHDMKT 268
Query: 437 IALALEAESGGVLVSVDKISKGYAMVVYRGKDYQ-RPSTLRPKN 479
E +GG+++ G MVVYRG Y+ PS +P N
Sbjct: 269 AHEITERRTGGLVI----WRAGSVMVVYRGSSYEGPPSKTQPVN 308
>gi|224059986|ref|XP_002300024.1| predicted protein [Populus trichocarpa]
gi|222847282|gb|EEE84829.1| predicted protein [Populus trichocarpa]
Length = 1012
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 236/525 (44%), Positives = 331/525 (63%), Gaps = 41/525 (7%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIH------ 58
RKTGGLV+WR G+ + LYRG Y+ P Y E SSV++ + +
Sbjct: 227 RKTGGLVVWRVGSKIVLYRGADYKYP--------YFLAE--TSSVNETSPDAVQNIDVDD 276
Query: 59 KQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEK 118
K++ G+ LSA +P + D V + V + E + +E ++
Sbjct: 277 KEVDEEGSVLSAVDGAAPPEPRSSDEI--VRPSLVQGVGSPNRVRFQLPGEAQLTEEADQ 334
Query: 119 LLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLAR 178
LLDGLGPR+ DW G DPLPVDAD+LP +V GY+ PFR+LPYGV TL E T L+RL R
Sbjct: 335 LLDGLGPRFNDWWGYDPLPVDADLLPAVVSGYRRPFRLLPYGVSPTLTNDEMTTLKRLGR 394
Query: 179 VLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLL 238
LP HFALGR+ + QGLA +++KLWEK IAKIA+KRGVQ T SE M +++K LTGGTLL
Sbjct: 395 PLPCHFALGRNTKHQGLAASIVKLWEKCEIAKIAVKRGVQNTNSELMAQELKWLTGGTLL 454
Query: 239 SRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSG 298
SR+++F+V YRGK+FL V+ A+++R + D +++ + I +
Sbjct: 455 SRDREFIVLYRGKDFLPSAVSSAIEDRRKRG----DMDKRW-----------TDCITSNE 499
Query: 299 TAGTLKE----TLDANSRWGKRLDDSH--KENLVREAEVRRHAYLVQKLEKKLARAERKL 352
T+ LK+ T +A SR +DD++ K +L +R +++ KL+ A K
Sbjct: 500 TSEELKDRSWRTTNAKSR--DEIDDTNDRKHDLSENKNLRSTDAAIKRTSIKLSMALEKK 557
Query: 353 LRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENM 412
+AE+ LS++E+S + + D E IT+EER+M RK+GL+MK FLL+G RGVFDGT+ENM
Sbjct: 558 AKAEKLLSELEKSEMSQQPEKDKEGITEEERYMLRKIGLKMKPFLLMGERGVFDGTIENM 617
Query: 413 HLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRP 472
HLHWKYRELVKII K K+F + +A LEAESGG+LV+V+ +SKGYA+++YRGK+Y RP
Sbjct: 618 HLHWKYRELVKIICKEKSFQAVQAVARTLEAESGGILVAVEGVSKGYAIILYRGKNYTRP 677
Query: 473 STLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEI 517
+ LRP LL+KR+A+ RS+E QR+E+L HV L SN L+ ++
Sbjct: 678 ACLRPPTLLSKRQAMKRSLEAQRRESLKLHVLRLTSNIDHLKLQL 722
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 377 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKK 436
S+ +EE R +G+ K L +G+ G+ +G V +H W+ E+VKI+ + K+
Sbjct: 161 SLPNEELRRLRTIGIAEKRKLKVGKAGITEGIVNGIHERWRRSEVVKIVCEDLCRMNMKR 220
Query: 437 IALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTL 475
LE ++GG++V G +V+YRG DY+ P L
Sbjct: 221 THDLLERKTGGLVV----WRVGSKIVLYRGADYKYPYFL 255
>gi|326507446|dbj|BAK03116.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 775
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 244/550 (44%), Positives = 344/550 (62%), Gaps = 39/550 (7%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
R+TGGL+IWR+G+ + +YRG +Y P K L +S + KQ + +
Sbjct: 242 RRTGGLIIWRAGSVMVVYRGSNYTRP--------LKSQTLDGTSSPR---KQEDSALFIP 290
Query: 65 GNSLSAAADKTAQDPSNFDSYNNVHATQV-NLETASEEQETDFVREVKYEDEVEKLLDGL 123
S + D +D + ++N + N E +EE E E ++LD L
Sbjct: 291 NGSSTVENDNQGKDLAA--QHDNAPILDLHNTEDMTEE-----------ELEFNQMLDEL 337
Query: 124 GPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPH 183
GPR+ DW G LPVDAD+LP +PGY+ PFRVLP G+R++L E TNL++LAR LP H
Sbjct: 338 GPRFVDWWGTGILPVDADLLPQTIPGYKAPFRVLPTGMRTSLTNSELTNLRKLARNLPCH 397
Query: 184 FALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKD 243
FALGR+R QGLA A++KLWEKS + KIA+KRG+Q T ++ M ++IK LTGGTLL RNK
Sbjct: 398 FALGRNRNHQGLAAAIVKLWEKSLVVKIAVKRGIQNTNNKLMSDEIKNLTGGTLLLRNKY 457
Query: 244 FLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIE-TIEKSGTAGT 302
++V YRGK+FL V AL ERE L K +Q+ EEQ R S + S E E GT
Sbjct: 458 YIVIYRGKDFLPTSVAAALAEREELTKDIQNLEEQRR---SISIEHSPEDGFEGHALVGT 514
Query: 303 LKETLDANSRWGKRLDDSHKENLVREAEVRRHA-YLVQKLEKKLARAERKLLRAERALSK 361
L E +A +RWG+ + ++ + +EA R L ++LE KL+ A+ K+ RA + LSK
Sbjct: 515 LAEFQEAQARWGRNVTSKEQQEM-KEASFRSEKEKLFRRLEHKLSIAQAKIHRAGKLLSK 573
Query: 362 VEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYREL 421
+E S+ A D E IT EER +FR++GL+MKA+L +G RGVFDG +ENMHLHWK+RE+
Sbjct: 574 IEASMVLANPSDDREMITAEERSVFRRIGLKMKAYLPVGIRGVFDGVIENMHLHWKHREV 633
Query: 422 VKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLL 481
VK+I K KT ++ A LE ESGG+LV+++++ KG+A++ YRGK+Y+RP +RP+NLL
Sbjct: 634 VKLITKQKTLAFVEETARLLEYESGGILVAIERVPKGHALIFYRGKNYRRPINIRPRNLL 693
Query: 482 TKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYAT 541
TK KAL R++ +QR EAL +H+ LE N +++ ++ + DE+ D DS +
Sbjct: 694 TKAKALKRAVAMQRHEALSQHIDQLEINMKQMKRDLGMEDY-----DEEGGDGSDS--ES 746
Query: 542 EDDDSE-DEG 550
EDD + DEG
Sbjct: 747 EDDTAGYDEG 756
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 29/152 (19%)
Query: 341 LEKKLARAERKLLRAERALSKVEESLKPAER--QADPE------------------SITD 380
L++ AR +R+ A S ++E++ P ER ++D E ++ D
Sbjct: 125 LDRSWARPDRQF-----AASGLDEAVLPWERDRESDGEEVDGVKRKRVRAPSLAELTMDD 179
Query: 381 EERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALA 440
E R +G+ +K + + + GV E +H W+ ELV++ + K
Sbjct: 180 VELRRLRGMGMTLKDRITVPKAGVTQAITEKIHDAWRKSELVRLKFHEDHANDMKTAHEL 239
Query: 441 LEAESGGVLVSVDKISKGYAMVVYRGKDYQRP 472
+E +GG+++ G MVVYRG +Y RP
Sbjct: 240 VERRTGGLII----WRAGSVMVVYRGSNYTRP 267
>gi|6692258|gb|AAF24608.1|AC010870_1 unknown protein [Arabidopsis thaliana]
Length = 1020
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 256/639 (40%), Positives = 364/639 (56%), Gaps = 68/639 (10%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
KTGGLVIWRSG+ + LYRGV+Y+ P ++ + ASS+ Q KQ S++
Sbjct: 232 KTGGLVIWRSGSKILLYRGVNYQYPYFVSDRDLAHEAASGASSMDQGVVDSREKQ-SIAE 290
Query: 66 NSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGP 125
+S + +K + P + + L EV+ +E ++LL+GLGP
Sbjct: 291 SSAPSITNKMVK-PMLTQGVGSPDKVRFQLPG-----------EVQLVEEADRLLEGLGP 338
Query: 126 RYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFA 185
R+TDW DPLPVD D+LP +VP Y+ PFR+LPYGV L E T ++RL R LP HFA
Sbjct: 339 RFTDWWAYDPLPVDGDLLPAVVPDYRRPFRLLPYGVSPKLTDDEMTTIRRLGRPLPCHFA 398
Query: 186 LGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVED---------IKKLTGGT 236
LGR+R LQGLAVA++KLWEK +AKIA+KRGVQ T SE M E+ IK LTGGT
Sbjct: 399 LGRNRNLQGLAVAIVKLWEKCELAKIAVKRGVQNTNSELMAEELKVVGLLLVIKWLTGGT 458
Query: 237 LLSRNKDFLVFYRGKNFLSPDVTEALQERERL----------AKSLQDEEEQARLRASAF 286
L+SR+KDF+V YRGK+FL V+ A++ER R L + EE+ + RA
Sbjct: 459 LISRDKDFIVLYRGKDFLPSAVSSAIEERRRQTMIMENSSVHGNKLTENEEEIKPRA--- 515
Query: 287 VLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLA 346
+KE ++ ++ K +H+ ++ + +++K KL+
Sbjct: 516 ----------------VKEDIELEAKDQKDHIQTHQ---MKSRQRNSPEAILEKTSMKLS 556
Query: 347 RAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFD 406
A K AE+ L+ +E P D E IT++E++M RK+GL+MK FLLLGRRGVFD
Sbjct: 557 MALEKKANAEKVLADLENRESPQLSDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFD 616
Query: 407 GTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRG 466
GT+ENMHLHWKYRELVKII + + A K+A LEAESGG+LV+V+ +SKGYA++VYRG
Sbjct: 617 GTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVYRG 676
Query: 467 KDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGT 526
K+Y+RP LRP+ LL+KR+AL RS+E QR+++L HV L +N L ++ + ++ T
Sbjct: 677 KNYERPQCLRPQTLLSKREALKRSVEAQRRKSLKLHVLKLSNNIEELNRQLVEDSATNET 736
Query: 527 GDEQLYDKLDSAYATEDDDSEDE--------GDEAYLEMYAGG-----NDNEDEIDN-ST 572
+ + TE+ +E E G + L + + G +D+E E+D +T
Sbjct: 737 WSDGESSNMMVEEETENQHTEPEKAREKIELGYSSDLSVPSSGEENWEDDSEGEVDPLTT 796
Query: 573 HNLEMESDFPYHAQDQESETELMDSESEAYTVHSTYCAS 611
+ E + D A Q E +DS + T A+
Sbjct: 797 SSQEYQEDESESASSQRHEGNSLDSTANLSVFAETGSAN 835
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 18/135 (13%)
Query: 338 VQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFL 397
++++ KK ERK + E+ S E +L PAE + R +G+R+ L
Sbjct: 140 LKRVWKKETEMERK--KEEKVPSLAELTLPPAELR------------RLRTVGIRLTKKL 185
Query: 398 LLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISK 457
+G+ G+ +G V +H W+ E+VKI + + K+ LE ++GG+++
Sbjct: 186 KIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVLETKTGGLVI----WRS 241
Query: 458 GYAMVVYRGKDYQRP 472
G +++YRG +YQ P
Sbjct: 242 GSKILLYRGVNYQYP 256
Score = 42.4 bits (98), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 165 LARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSER 224
+ RK+A +++ P FA+GRS + GLA + ++K+ +A + +K T+ +
Sbjct: 891 ILRKQALKMKKR-----PPFAVGRSNVVTGLARTLKMHFQKNPLAIVNVKGRANGTSVQE 945
Query: 225 MVEDIKKLTGGTLLSRNKDFLVFYRG 250
++ +K+ TG L+S+ ++ YRG
Sbjct: 946 VIAKLKEETGALLVSQEPSKVILYRG 971
>gi|356527819|ref|XP_003532504.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 719
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 225/466 (48%), Positives = 307/466 (65%), Gaps = 13/466 (2%)
Query: 113 EDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATN 172
E E ++LDG GPR+ +W G LPVDAD LP +VPGY+ P R+LP G+R L E TN
Sbjct: 259 EAEFNRMLDGFGPRFVEWWGTGILPVDADSLPPMVPGYKTPLRLLPAGMRPQLTNDELTN 318
Query: 173 LQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKL 232
+++LA+ LP HFALGR+R LQGLA A+++LWEKS +AKI +KRG+ T +E M +++K L
Sbjct: 319 MRKLAKSLPCHFALGRNRNLQGLASAILRLWEKSLVAKIGVKRGIVNTNNELMAQELKAL 378
Query: 233 TGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIE 292
TGGTLL RNK ++V YRGK+F+ V + ER+ L K +QD EE+ R +A PS E
Sbjct: 379 TGGTLLLRNKYYIVIYRGKDFVPTSVAAVIAERQELTKQVQDVEEKVRCKALDST-PSGE 437
Query: 293 TIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKL 352
E + AG+L E A + WG+ + +E +++E ++A LV+K+E KLA A+ K
Sbjct: 438 D-ESTAQAGSLAEFYVAQACWGRDISTEERERMMQEVAKAKNAKLVKKIECKLAVAQAKR 496
Query: 353 LRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENM 412
LRAE+ L+K+E SL P D E+ITDEER MFR +GLRMKA+L LG RGVFDG +ENM
Sbjct: 497 LRAEKLLAKIEASLLPVGPDYDKETITDEERVMFRSVGLRMKAYLPLGIRGVFDGVIENM 556
Query: 413 HLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRP 472
HLHWK+RELVK+I K KT + A LE ESGG+LV++DK+ KG++++ YRGK+Y+RP
Sbjct: 557 HLHWKHRELVKLITKQKTLAFVEDTARLLEYESGGILVAIDKVPKGFSLIYYRGKNYRRP 616
Query: 473 STLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDE-QL 531
TLRP+NLLTK KAL RS+ +QR EAL +HV L ++ ++ ++ GT D +
Sbjct: 617 MTLRPRNLLTKAKALQRSVVMQRHEALSQHVTELGEKIEEMKKKL-GLSQDLGTKDRWNV 675
Query: 532 YDKLDSAYATEDDDSEDE---GDEAYLEMYAGGNDNEDEIDNSTHN 574
D + +E SE+E GD+ GN N+DE N
Sbjct: 676 EDHNQIDHISEFTQSEEEYSDGDD------TDGNFNDDEYSECNDN 715
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 376 ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAK 435
+++ +EE R LG+ +K + + + G+ ++ +H HW ELV++ K F A+
Sbjct: 142 QTLVEEELRRLRTLGMSLKEKITIPKAGLTRAVLDRIHRHWSNCELVRL--KFHEF-LAQ 198
Query: 436 KIALA---LEAESGGVLVSVDKISKGYAMVVYRGKDYQRP 472
+ LA +E + G+++ G M VYRGK+YQ P
Sbjct: 199 NMKLAHQIVEHRTRGLVI----WRSGSYMWVYRGKNYQGP 234
>gi|356573408|ref|XP_003554853.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 1027
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 243/600 (40%), Positives = 346/600 (57%), Gaps = 53/600 (8%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
RKTGGLV+WRSG+ + LYRG Y+ P +K N A K K+ S S
Sbjct: 195 RKTGGLVVWRSGSKIILYRGTDYKYPYFLSDKVSRDDNTGDAMQHMDEDAKNFDKRESHS 254
Query: 65 G--NSLSAAAD----KTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEK 118
NS++ A KTA+ P+ + + + L E + + +
Sbjct: 255 SEKNSVTYAGKSSNVKTAK-PALIQGVGSPNKVRFQLPG-----------EAELAKDADS 302
Query: 119 LLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLAR 178
LL G+GPR+ DW G DPLPVDAD+LP ++PGY+ PFR+LPYGV+ L E T ++RL +
Sbjct: 303 LLTGIGPRFIDWWGYDPLPVDADLLPAVIPGYRKPFRLLPYGVKPKLTDDEMTTMRRLGK 362
Query: 179 VLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLL 238
LP HFALGR+++L GLA A+IKLWE+ I KIA+KRGV T E M E+IK LTGGTL+
Sbjct: 363 HLPCHFALGRNKKLHGLAAAIIKLWERCEIVKIAIKRGVLNTNGELMAEEIKYLTGGTLI 422
Query: 239 SRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSG 298
+R+K+F+VFYRGK+FL V+ A+++R +S+ + + R S P + K G
Sbjct: 423 ARDKEFIVFYRGKDFLPTAVSSAIEQR----RSIGMYKLKTRNSLSVTDDPDL----KDG 474
Query: 299 TAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERA 358
T E G K+ ++ EAE ++ KL+ A + +AE+
Sbjct: 475 TIECDSEVK------GMNFKKDTKQGMLTEAEA-----AIKSTSIKLSMALEEKAKAEKL 523
Query: 359 LSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKY 418
LS++E + P E + + E IT+EE++M R++GL+M FLLLGRRGVFDGTVENMHLHWKY
Sbjct: 524 LSELENAESPQEEEINKEGITEEEKYMLRRIGLKMSPFLLLGRRGVFDGTVENMHLHWKY 583
Query: 419 RELVKIIV-KVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRP 477
RELVKII K + + ++IA LEAESGG+L++V++++K YA++VYRGK+Y RP++LRP
Sbjct: 584 RELVKIICNKQMSLEDVQQIAQTLEAESGGILIAVERVNKSYAIIVYRGKNYSRPASLRP 643
Query: 478 KNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDS 537
+ LL K++AL RSIE QR E+L HV L+ N L+ Q+ +++
Sbjct: 644 RTLLNKKQALKRSIEAQRCESLKLHVLKLDRNINELK--------------HQMAKDMEA 689
Query: 538 AYATEDDDSEDEGDEAYLEMYAGGNDNEDEIDNSTH-NLEMESDFPYHAQDQESETELMD 596
D++ E +E+ G ++ E NS + N E+ Y QE EL D
Sbjct: 690 NSKQTSVDNQQAIQEQPVELIDSGGAHQAEPGNSINWNYPKEASVDYQQTMQEQSVELFD 749
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 377 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKK 436
S++D E GL M+ L +G+ G+ +G V +H W+ E+V+I+ + + K+
Sbjct: 129 SLSDAEIRRLTTAGLAMRQKLRVGKAGLTEGIVNGIHERWRSFEVVRIVCEDLSRFNMKR 188
Query: 437 IALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPK 478
LE ++GG++V G +++YRG DY+ P L K
Sbjct: 189 THDLLERKTGGLVV----WRSGSKIILYRGTDYKYPYFLSDK 226
Score = 38.9 bits (89), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 165 LARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSER 224
L RK+A +++ P ++G+S + GLA A+ ++K +A + +K + T+ +
Sbjct: 906 LLRKQALKMKKR-----PVLSVGKSNIVTGLAKAIKAHFQKHPLAIVNVKGRAKGTSIQE 960
Query: 225 MVEDIKKLTGGTLLSRNKDFLVFYRG 250
+V +++ TG L+S+ + ++ YRG
Sbjct: 961 VVSKLEQETGAVLVSQELNKVILYRG 986
>gi|356573410|ref|XP_003554854.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 1028
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 248/610 (40%), Positives = 355/610 (58%), Gaps = 46/610 (7%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQ--ATDKQIHKQIS 62
RKTGGLV+WRSGT + LYRG Y+ P L+ ++ +++ ++ A DK K S
Sbjct: 214 RKTGGLVVWRSGTKIILYRGADYKYPYF-LSDKVTRQDNTSNDALQHVNADDKYCDKSES 272
Query: 63 MSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDG 122
S A A + SN ++ V Q D E + ++ + LL G
Sbjct: 273 HLSEKNSVAC---AVENSNAETAKPALILGVGTPNKVRFQLPD---EAELAEDTDCLLTG 326
Query: 123 LGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPP 182
LGPR+TDW G DPLPVDAD+LP ++ GY+ PFR+LPYGV L E T L+RL + LP
Sbjct: 327 LGPRFTDWWGGDPLPVDADLLPAVIHGYRKPFRLLPYGVNPKLTDDEMTTLKRLGKPLPC 386
Query: 183 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNK 242
HFALGR+R+LQGLA A+IKLWE+ I KIA+KRGVQ T+S+ M +++K LTGG LLSR++
Sbjct: 387 HFALGRNRKLQGLAAAIIKLWERCEIVKIAVKRGVQNTSSKIMAKELKHLTGGILLSRDR 446
Query: 243 DFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGT 302
+F VFYRGK++L V+ A++++ + +L+ + ++ K G
Sbjct: 447 EFFVFYRGKDYLPAAVSSAIKKQRNIG--------MYKLKFGNSLSATVTPNPKDG---- 494
Query: 303 LKETLDANSRW-GKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSK 361
T++ NS G K+ ++ +AE +++ KL+ A K +AE+ L K
Sbjct: 495 ---TIECNSEVKGMNFQKDTKQRMLTKAE-----EAIKRTSIKLSMALEKKAKAEKLLEK 546
Query: 362 VEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYREL 421
+ + P E++ D E I+ EE++M R++GL MK FLLLGRRGVFDGTVENMHLHWKYREL
Sbjct: 547 LINAESPQEQEIDKEGISKEEKYMLRRIGLMMKPFLLLGRRGVFDGTVENMHLHWKYREL 606
Query: 422 VKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLL 481
VKII + ++ +IAL LEAESGG+LV+V+++ KG+A++VYRGK+Y P LRP+ LL
Sbjct: 607 VKIICN-GSLEEVHQIALTLEAESGGILVAVERVRKGFAIIVYRGKNYSVPVCLRPQTLL 665
Query: 482 TKRKALARSIELQRQEALLKHVATLESNAGRLRSEI---EQMNSVKGTGDEQLYDKLD-- 536
KR+AL RSIE QR+E+L + TL+ L+ +I E+ NS + +L D
Sbjct: 666 NKRQALKRSIEAQRRESLKLRILTLDKEINELKLQIVEDEEANSKQMAEASRLDMATDEH 725
Query: 537 ---SAYATEDDDSEDEGD------EAYLEMYAGGNDNEDEIDNS-THNLEMESDFPYHAQ 586
S + E GD E +E+ G ++ E +NS + N +E+
Sbjct: 726 EACSNFINWHSPKEASGDNQQAIQEEPVELIDSGGAHQGEPENSISWNSSIEASIDNQQA 785
Query: 587 DQESETELMD 596
QE EL+D
Sbjct: 786 IQEHPVELID 795
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 377 SITDEERFMFRKLGLRM-KAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAK 435
S+ D E LG K + L + G+ + V+ +H WK E+V++ + + D +
Sbjct: 147 SLPDSEIRRLTTLGFSTTKKKVRLAKAGITEQIVDVIHERWKRSEVVRVFCEELSRDDMR 206
Query: 436 KIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTL 475
+ LE ++GG++V G +++YRG DY+ P L
Sbjct: 207 RTHDLLERKTGGLVV----WRSGTKIILYRGADYKYPYFL 242
Score = 38.9 bits (89), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 165 LARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSER 224
L RK+A +++ P A+G+S + G+ + +EK +A + +K + T+ +
Sbjct: 873 LLRKQALKIKQ------PVLAIGKSNIVSGVVQTIKAHFEKHPLAVVNVKGRAKGTSVQE 926
Query: 225 MVEDIKKLTGGTLLSRNKDFLVFYRG 250
+V +++ TG L+SR ++ YRG
Sbjct: 927 LVFKLEQETGALLVSREPSNIILYRG 952
>gi|357167767|ref|XP_003581323.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 1053
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 219/463 (47%), Positives = 302/463 (65%), Gaps = 29/463 (6%)
Query: 109 EVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARK 168
EVK DE +KLLDGLGPR++ W G DPLPVDAD+LP IVPG++ PFR+LP GV S L +
Sbjct: 386 EVKVADEGDKLLDGLGPRFSGWWGYDPLPVDADLLPAIVPGFRRPFRLLPSGVPSKLTDR 445
Query: 169 EATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVED 228
E T L+RLAR LP H+ALGRS LQGLAV+MIKLWE+ +AKIA+KRG SE + E+
Sbjct: 446 EMTILRRLARPLPYHYALGRSSNLQGLAVSMIKLWERCEVAKIAIKRGAYCIDSELVSEE 505
Query: 229 IKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVL 288
+K LTGGTLLSR+ +VFYRGK+FLSP V+ A+++R + + S + +
Sbjct: 506 LKGLTGGTLLSRDNKSIVFYRGKDFLSPAVSLAIEKRRKHSNS-----------TTGKLK 554
Query: 289 PSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARA 348
P E + A LK T DA+ + H+E E E + + Q +E +L++A
Sbjct: 555 PETEESTSTQDASELKMTSDASVNG----HECHEEK--NEGETSLNT-VAQNVEIRLSQA 607
Query: 349 ERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGT 408
+ +AE+ L ++E++ +P++ + E I+DEER+M RK+GL+MK FLLLGRRGVFDGT
Sbjct: 608 IVEKEKAEKLLEELEKASQPSKAETR-EHISDEERYMLRKIGLQMKPFLLLGRRGVFDGT 666
Query: 409 VENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKD 468
+ENMHLHWKYRELVKII K + + A LE++SGG+LV+V+++SKG+A+++YRGK+
Sbjct: 667 IENMHLHWKYRELVKIICKEHSMKDVEYAARTLESQSGGILVAVERVSKGHAIIMYRGKN 726
Query: 469 YQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSE----------IE 518
Y RPSTLRPK+LL KR AL RS+E QRQ++L HV L N LR + I
Sbjct: 727 YHRPSTLRPKSLLNKRDALKRSVEYQRQKSLKLHVLNLSKNIDYLRGQMVSFIHENKGIN 786
Query: 519 QMNSVKGTGDEQLYDKLDSAYATEDDDSEDEGDEAYLEMYAGG 561
+++ GT +E+ + + +E DS G + L + G
Sbjct: 787 DLSNSSGTLEEKSEEVAPEGFDSEGQDSTSSGTDGTLNLTKSG 829
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 386 FRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAES 445
+ +G+R++ L +G+ GV +G V +H W+ ELVKI + ++ LE ++
Sbjct: 148 LQGVGIRLRKRLKVGKPGVTEGIVNGIHERWRNVELVKIRCDDVSAMNMRRTHEILERKT 207
Query: 446 GGVLVSVDKISKGYAMVVYRGKDYQRP 472
GG+++ G +++YRG +Y+ P
Sbjct: 208 GGLVI----WRSGSTIILYRGTNYKYP 230
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 29/146 (19%)
Query: 153 PFRVLPYGVRSTLA-RKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKI 211
PFR P R L RK+A +++ P A+GR+ + G+A + ++K +A +
Sbjct: 917 PFRTAPLSNRERLMLRKQALKMKKR-----PVLAIGRNNVITGVAKTIQTHFKKHPLAIV 971
Query: 212 ALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRG-------------------KN 252
+K T ++++ ++++ TG L+SR + ++ YRG K
Sbjct: 972 NIKNRADGTPVQQLISELERATGSVLVSREPNKVILYRGWGAEVTQKSSKENSTNEVEKE 1031
Query: 253 FLSPDVTEALQERERLAKSLQDEEEQ 278
+SP + EA+ RL L +E Q
Sbjct: 1032 VISPQLLEAI----RLECGLHSDESQ 1053
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 17/107 (15%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRN-ELPASSVSQAT---DKQIHKQ 60
RKTGGLVIWRSG+ + LYRG +Y+ P K + +L +SV Q++ D + H
Sbjct: 205 RKTGGLVIWRSGSTIILYRGTNYKYPYFHDQKSNSEDGKDLGIASVQQSSSEEDAENH-- 262
Query: 61 ISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFV 107
A+ D T ++ DS+ V+ Q + A E++ D V
Sbjct: 263 ---------ASHDSTLEEDEEDDSFGIVYGEQRTI--AEEDKNHDVV 298
Score = 42.7 bits (99), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 378 ITDEERFMFRKLGLRMK--AFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKT-FDQA 434
+++ ER M RK L+MK L +GR V G + + H+K L + +K +
Sbjct: 923 LSNRERLMLRKQALKMKKRPVLAIGRNNVITGVAKTIQTHFKKHPLAIVNIKNRADGTPV 982
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRG 466
+++ LE +G VLVS + +++YRG
Sbjct: 983 QQLISELERATGSVLVSREP----NKVILYRG 1010
>gi|302805129|ref|XP_002984316.1| hypothetical protein SELMODRAFT_120007 [Selaginella moellendorffii]
gi|300148165|gb|EFJ14826.1| hypothetical protein SELMODRAFT_120007 [Selaginella moellendorffii]
Length = 692
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 241/556 (43%), Positives = 334/556 (60%), Gaps = 50/556 (8%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEV---PSVQLNKRIYKRNELPASSVSQATDKQIHKQIS 62
KTGGLV+WR+G LYRG Y S+ N + Y+R ++
Sbjct: 146 KTGGLVVWRTGGMAILYRGKGYFARVDNSMVANLKKYQRRKI------------------ 187
Query: 63 MSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDG 122
N + A + + ++ + A + + E + E E Y DE++ LL+
Sbjct: 188 ---NLMEAIKIRDEDEDRDYSQSEHGEARR-DSEKGNIEDE--------YLDEIDALLEE 235
Query: 123 LGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPP 182
LGPRY DW G P+PVD D+LP VPGY+PP R+LPY + L+ E T L+RL + LPP
Sbjct: 236 LGPRYDDWIGRKPVPVDGDLLPASVPGYKPPLRMLPYRAKKNLSNMELTVLRRLVKPLPP 295
Query: 183 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNK 242
HF LGR+R LQGLA A++KLW+KS + KI LKRGVQ T ++ M E++++LTGG LLSR+K
Sbjct: 296 HFVLGRNRGLQGLASAILKLWQKSELVKIGLKRGVQNTRNQLMAEELERLTGGVLLSRDK 355
Query: 243 DFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGT 302
F+ YRGK+FL V L+ERE + L +E+Q R+ A + +G+
Sbjct: 356 FFITLYRGKDFLPTSVAAVLRERESNMRELLLKEDQVRIPAQI----GDGQNRTTPVSGS 411
Query: 303 LKETLDANSRW----GKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERA 358
L E+++ +W ++ D+ + V +VR ++LE KLA A K RA+
Sbjct: 412 LSESMEMRRQWEAQRSEKDDEMDRNAAVVALKVREQ----KRLEAKLAAAISKKRRADLQ 467
Query: 359 LSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKY 418
+ K+E SL +E D E+IT+EER+MF+KLGLRM AFLL+GRRGVFDG +ENMHLHWK+
Sbjct: 468 IVKLERSLLLSEHPRDRETITEEERYMFKKLGLRMDAFLLIGRRGVFDGVIENMHLHWKH 527
Query: 419 RELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPK 478
RELVK+I+K K A ++A LE ESGG+LV V SKG A++VYRGK+YQRP+ LRP+
Sbjct: 528 RELVKLILKEKDKAIALEVAKMLEIESGGILVGVVTTSKGQAIIVYRGKNYQRPAELRPR 587
Query: 479 NLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVK---GTGDEQLY--D 533
+LLTKRKALARS E+QR++AL H+ LE +LR + + K DE Y D
Sbjct: 588 SLLTKRKALARSKEIQRKKALQLHIEKLEELIMKLRKDYLLADRKKLHHDDDDEMAYSDD 647
Query: 534 KLDSAYATEDDDSEDE 549
LDS +++ +SE E
Sbjct: 648 LLDSEISSDGSESEAE 663
>gi|449459492|ref|XP_004147480.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 1032
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 247/613 (40%), Positives = 369/613 (60%), Gaps = 49/613 (7%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVP--SVQLNKRIYKRNELPASSVSQATDKQIHKQIS 62
RKTGG+V+WRSG+ + LYRG +Y P S ++ + ++ LPAS + + +S
Sbjct: 229 RKTGGIVVWRSGSKIILYRGPNYIYPYFSHEILEDEGSQDALPASHSDDGGNSETESTLS 288
Query: 63 MSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDG 122
+ SA + + PS T + A E + ++ E LL+G
Sbjct: 289 CINDERSAGPTSSVKMPS---------PTLIQGVGAPNRVRFQLPGEAELAEDAESLLEG 339
Query: 123 LGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPP 182
LGPR++DW G DPLPVDAD+LP IVPGY+ PFR+LPYGV+ L E T+L+RLAR LP
Sbjct: 340 LGPRFSDWWGYDPLPVDADLLPAIVPGYRKPFRLLPYGVKPKLTNDEMTSLRRLARPLPC 399
Query: 183 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNK 242
HFALGR+R+LQGLA ++I+LWEK IAKIA+KRGVQ T ++ M E+++ LTGGTLLSR++
Sbjct: 400 HFALGRNRKLQGLAASIIQLWEKCEIAKIAVKRGVQNTNNKLMAEELQLLTGGTLLSRDR 459
Query: 243 DFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGT 302
+F+V YRGK+FL V+ A++++ + L + ++ A+ +E E T +
Sbjct: 460 EFIVLYRGKDFLPFAVSSAMEQKRHM--RLHEMKQTDNSPATTGQGLKLEINENGPTNES 517
Query: 303 LKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKV 362
+ + W K++ ++ + E +R+ + KL+ A K +AE L+K+
Sbjct: 518 -----QSITGW-KKIVSERRKLMSSETSMRKTSI-------KLSIALEKKAKAEEFLAKL 564
Query: 363 EESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELV 422
EE K + + D E IT EER+M +K+GLRMK FLLLGRRGVFDGTVENMHLHWKYRELV
Sbjct: 565 EEEEKLQQPEIDKEGITVEERYMLKKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELV 624
Query: 423 KIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLT 482
KII ++F +A LEAESGG+LV+V+++ + +A++++RGK+Y+RPS LRP++LL
Sbjct: 625 KIITNERSFKTVHDVARTLEAESGGILVAVERVKRSFAIIIFRGKNYKRPSRLRPESLLN 684
Query: 483 KRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQ------MNSVKGTGDEQLYDKL- 535
K++AL RSIE QR+++L HV L N L+ ++++ M S+K + +Q + +
Sbjct: 685 KKEALKRSIEAQRRKSLKLHVLKLTQNVEELKLKLDEDKRAIGMESIKTSTFQQGKEGID 744
Query: 536 ------------DSAYATEDDDSE--DEGDEAYLEMYAGGNDNED-EIDNSTHNLEMESD 580
DSA T ++S +E + A ++ G + + +D S + L+ +D
Sbjct: 745 EIQTTGSLKLVADSACLTHAENSTCLEENEVAKVKKGHGTHSSGTICLDTSVNRLQTTND 804
Query: 581 -FPYHAQDQESET 592
F H DQ + T
Sbjct: 805 VFLIHNGDQSNAT 817
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 18/135 (13%)
Query: 338 VQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFL 397
VQK +K+ E+K R ERA S E SL T+EE R +G+R+K L
Sbjct: 138 VQKWKKRDGVREKK--REERAPSLAELSL------------TEEELGRLRTIGIRLKKKL 183
Query: 398 LLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISK 457
+G+ G+ +G V +H +W+ E+VKI + K+ LE ++GG++V
Sbjct: 184 NVGKAGITEGIVNTIHEYWRRSEVVKIACEDLCRLNMKRTHDLLERKTGGIVV----WRS 239
Query: 458 GYAMVVYRGKDYQRP 472
G +++YRG +Y P
Sbjct: 240 GSKIILYRGPNYIYP 254
Score = 42.4 bits (98), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 87/192 (45%), Gaps = 17/192 (8%)
Query: 282 RASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRR----HAYL 337
+++A V PS E++ + A K +D N+ +G S +L E+ H
Sbjct: 813 QSNATVRPSFESVRQGNHA---KVPMDTNAEFGTIEPQSGANSLSGESNSGTSDAVHHVA 869
Query: 338 VQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFL 397
+ K K R E + ++ LS + +P A+ ++++ER + R+ L+MK
Sbjct: 870 MNKDTKPSVRLEEE--KSPPLLSSTRIN-QPGYFPANVPQLSNKERLLLRRQALKMKKLP 926
Query: 398 LL--GRRGVFDGTVENMHLHWKYRELVKIIVKVKT-FDQAKKIALALEAESGGVLVSVDK 454
+L G+ V G + + H+K L + VK + ++I LE +G VLVS +
Sbjct: 927 VLSVGKSNVITGVAKAIKEHFKKHSLAIVNVKGRAKGTSVQEIVFKLEQATGAVLVSQEP 986
Query: 455 ISKGYAMVVYRG 466
+++YRG
Sbjct: 987 ----SKVILYRG 994
Score = 42.0 bits (97), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 148 PGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSS 207
PGY P L R++A +++L P ++G+S + G+A A+ + ++K S
Sbjct: 897 PGYFPANVPQLSNKERLLLRRQALKMKKL-----PVLSVGKSNVITGVAKAIKEHFKKHS 951
Query: 208 IAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRG 250
+A + +K + T+ + +V +++ TG L+S+ ++ YRG
Sbjct: 952 LAIVNVKGRAKGTSVQEIVFKLEQATGAVLVSQEPSKVILYRG 994
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 10/121 (8%)
Query: 164 TLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSE 223
+L +E L+ + L +G++ +G+ + + W +S + KIA + +L +
Sbjct: 163 SLTEEELGRLRTIGIRLKKKLNVGKAGITEGIVNTIHEYWRRSEVVKIACEDLCRLNM-K 221
Query: 224 RMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRA 283
R + +++ TGG ++ R+ ++ YRG N++ P + + L+DE Q L A
Sbjct: 222 RTHDLLERKTGGIVVWRSGSKIILYRGPNYIYPYFSHEI---------LEDEGSQDALPA 272
Query: 284 S 284
S
Sbjct: 273 S 273
>gi|116310121|emb|CAH67138.1| OSIGBa0130P02.2 [Oryza sativa Indica Group]
Length = 1048
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 240/564 (42%), Positives = 329/564 (58%), Gaps = 65/564 (11%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
RKTGGLVIWRSG+ + LYRG Y+ P Q R K + +S + + D+ I S
Sbjct: 206 RKTGGLVIWRSGSTIILYRGTDYKYPYFQ--DREMKNDMDESSEHTSSDDEDADLAIIAS 263
Query: 65 GNSLSAA-ADKTAQDPSNFDSYNN-------VHATQVNLETASEEQE------------- 103
S S +D A+ SN + V A + NL+ S EQ
Sbjct: 264 EQSGSEEDSDNPAEHGSNHTEEGDDLTRRFGVDALEGNLDIGSAEQSINSATKDQQAILH 323
Query: 104 --TDFVR----------------------------EVKYEDEVEKLLDGLGPRYTDWPGC 133
T+ R EVK +E +KLLDGLGPR++DW G
Sbjct: 324 TSTNVSRPSEISGRARSTLVAGVGSPNKFRLQLPGEVKLAEEADKLLDGLGPRFSDWWGY 383
Query: 134 DPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQ 193
DPLPVDAD+LP IVPGY+ PFR+LP GV L +E T L+RLAR LP H+ALGRS LQ
Sbjct: 384 DPLPVDADLLPAIVPGYRRPFRLLPSGVPPRLTDREMTILRRLARPLPYHYALGRSSNLQ 443
Query: 194 GLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNF 253
GLA +MIKLWE+ +AK+A+KRG + S+ + E +K LTGGTLLSR+ + +VFYRGK+F
Sbjct: 444 GLAASMIKLWERCEVAKVAIKRGAENIDSDLISEKLKGLTGGTLLSRDNESIVFYRGKDF 503
Query: 254 LSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRW 313
L V+ A+++R + S + +++ P + K T +LD + +
Sbjct: 504 LPTAVSLAIEKRRKYGNSTISNPKLNFDKST----PQNSSKLKMAT----DVSLDGHECY 555
Query: 314 GKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQA 373
K+ D E V + Q +E +L++A + + E+ + ++E S +P+ R
Sbjct: 556 EKKHKD---ETAVSDNRAESLNVFTQNVEARLSQAIAEKEKTEKLIEELEMSSEPS-RAE 611
Query: 374 DPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQ 433
E I++EER+M RK+GL+MK+FLLLGRRGVFDGTVENMHLHWKYRELVKII K
Sbjct: 612 TREVISEEERYMLRKVGLKMKSFLLLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIKD 671
Query: 434 AKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIEL 493
+ A LEAESGG+LV+V+++SK +A+++YRGK+YQRPSTLRPK+LL K+ AL RS+E
Sbjct: 672 VEYAARTLEAESGGILVAVERVSKAHAIIIYRGKNYQRPSTLRPKSLLNKKDALKRSVEY 731
Query: 494 QRQEALLKHVATLESNAGRLRSEI 517
QR ++L HV L N L+ ++
Sbjct: 732 QRYKSLKLHVLNLSKNIDYLKDQM 755
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 390 GLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVL 449
G+R++ L +G+ GV +G V +H W+ ELVKI + K+ LE ++GG++
Sbjct: 153 GIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEILERKTGGLV 212
Query: 450 VSVDKISKGYAMVVYRGKDYQRP 472
+ G +++YRG DY+ P
Sbjct: 213 I----WRSGSTIILYRGTDYKYP 231
Score = 42.7 bits (99), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 151 QPPFRVLPYGVRSTLA-RKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIA 209
Q P P R L RK+A +++ P A+GR+ + G+A A+ ++K +A
Sbjct: 909 QLPSAAAPLSNRERLMLRKQALKMKKR-----PVLAVGRNNVITGVAKAIKTHFKKHPLA 963
Query: 210 KIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRG 250
+ +K T ++++ ++++ TG L+SR + ++ YRG
Sbjct: 964 IVNIKNRADGTPIQQLISELEEATGSVLVSREPNKVILYRG 1004
>gi|449515235|ref|XP_004164655.1| PREDICTED: LOW QUALITY PROTEIN: chloroplastic group IIA intron
splicing facilitator CRS1, chloroplastic-like [Cucumis
sativus]
Length = 1053
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 248/617 (40%), Positives = 364/617 (58%), Gaps = 56/617 (9%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVP--SVQLNKRIYKRNELPASSVSQATDKQIHKQIS 62
RKTGG+V+WRSG+ + LYRG +Y P S ++ + ++ LPAS + + +S
Sbjct: 249 RKTGGIVVWRSGSKIILYRGPNYIYPYFSHEILEDEGSQDALPASHSDDGGNSETESTLS 308
Query: 63 MSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDG 122
+ SA + PS T + A E + ++ E LL+G
Sbjct: 309 CINDERSAGPTSYVKMPS---------PTLIQGVGAPNRVRFQLPGEAELAEDAESLLEG 359
Query: 123 LGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPP 182
LGPR++DW G DPLPVDAD+LP IVPGY+ PFR+LPYGV+ L E T+L+RLAR LP
Sbjct: 360 LGPRFSDWWGYDPLPVDADLLPAIVPGYRKPFRLLPYGVKPKLTNDEMTSLRRLARPLPC 419
Query: 183 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNK 242
HFALGR+R+LQGLA ++I+LWEK IAKIA+KRGVQ T ++ M E+++ LTGGTLLSR++
Sbjct: 420 HFALGRNRKLQGLAASIIQLWEKCEIAKIAVKRGVQNTNNKLMAEELQLLTGGTLLSRDR 479
Query: 243 DFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGT 302
+F+V YRGK+FL V+ A++++ + L + ++ A+ +E E T +
Sbjct: 480 EFIVLYRGKDFLPFAVSSAMEQKRHM--RLHEMKQTDNSPATTGQGLKLEINENGPTNES 537
Query: 303 LKETLDANSRWGKRLDDSHK----ENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERA 358
+ + W K + + K E +R+ ++ + RK +AE
Sbjct: 538 -----QSITGWKKIVSERRKLMSSETSMRKTSIKLSIVCI-----------RKKAKAEEF 581
Query: 359 LSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKY 418
L+K+EE K + + D E IT EER+M +K+GLRMK FLLLGRRGVFDGTVENMHLHWKY
Sbjct: 582 LAKLEEEEKLQQPEIDKEGITVEERYMLKKVGLRMKPFLLLGRRGVFDGTVENMHLHWKY 641
Query: 419 RELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPK 478
RELVKII ++F +A LEAESGG+LV+V+++ + +A++++RGK+Y+RPS LRP+
Sbjct: 642 RELVKIITNERSFKTVHDVARTLEAESGGILVAVERVKRSFAIIIFRGKNYKRPSRLRPE 701
Query: 479 NLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQ------MNSVK-------- 524
+LL K++AL RSIE QR+++L HV L N L+ ++++ M S+K
Sbjct: 702 SLLNKKEALKRSIEAQRRKSLKLHVLKLTQNVEELKLKLDEDKRAIGMESIKTSTFQPGK 761
Query: 525 -GTGDEQLYDKL----DSAYATEDDDSE--DEGDEAYLEMYAGGNDNED-EIDNSTHNLE 576
G + Q L DSA T ++S +E + A ++ G + + +D S + L+
Sbjct: 762 EGIDEIQTTGSLKLVADSACLTHAENSTCLEENEVAKVKKGHGTHSSGTICLDTSVNRLQ 821
Query: 577 MESD-FPYHAQDQESET 592
+D F H DQ + T
Sbjct: 822 TTNDVFLIHNGDQSNAT 838
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 18/135 (13%)
Query: 338 VQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFL 397
VQK +K+ E+K R ERA S E SL T+EE R +G+R+K L
Sbjct: 158 VQKWKKRDGVREKK--REERAPSLAELSL------------TEEELGRLRTIGIRLKKKL 203
Query: 398 LLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISK 457
+G+ G+ +G V +H W+ E+VKI + K+ LE ++GG++V
Sbjct: 204 NVGKAGITEGIVNTIHEFWRRSEVVKIACEDLCRLNMKRTHDLLERKTGGIVV----WRS 259
Query: 458 GYAMVVYRGKDYQRP 472
G +++YRG +Y P
Sbjct: 260 GSKIILYRGPNYIYP 274
Score = 42.7 bits (99), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 88/192 (45%), Gaps = 17/192 (8%)
Query: 282 RASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRR----HAYL 337
+++A V PS E++ + A K +D N+ +G S +L E+ H
Sbjct: 834 QSNATVRPSFESVRQGNHA---KVPMDTNAEFGTIEPQSGANSLSGESNSGTSDAVHHVA 890
Query: 338 VQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFL 397
+ K K R E + ++ LS + +P A+ ++++ER + R+ L+MK
Sbjct: 891 MNKDTKPSVRLEEE--KSPPLLSSTRIN-QPGYFPANVPQLSNKERLLLRRQALKMKKLP 947
Query: 398 LL--GRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQA-KKIALALEAESGGVLVSVDK 454
+L G+ V G + + H+K L + VK + + ++I LE +G VLVS +
Sbjct: 948 VLSVGKSNVITGVAKAIKEHFKKHSLAIVNVKGRAKGTSVQEIVFKLEQATGAVLVSQEP 1007
Query: 455 ISKGYAMVVYRG 466
+++YRG
Sbjct: 1008 ----SKVILYRG 1015
Score = 42.0 bits (97), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 148 PGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSS 207
PGY P L R++A +++L P ++G+S + G+A A+ + ++K S
Sbjct: 918 PGYFPANVPQLSNKERLLLRRQALKMKKL-----PVLSVGKSNVITGVAKAIKEHFKKHS 972
Query: 208 IAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRG 250
+A + +K + T+ + +V +++ TG L+S+ ++ YRG
Sbjct: 973 LAIVNVKGRAKGTSVQEIVFKLEQATGAVLVSQEPSKVILYRG 1015
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 10/121 (8%)
Query: 164 TLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSE 223
+L +E L+ + L +G++ +G+ + + W +S + KIA + +L +
Sbjct: 183 SLTEEELGRLRTIGIRLKKKLNVGKAGITEGIVNTIHEFWRRSEVVKIACEDLCRLNM-K 241
Query: 224 RMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRA 283
R + +++ TGG ++ R+ ++ YRG N++ P + + L+DE Q L A
Sbjct: 242 RTHDLLERKTGGIVVWRSGSKIILYRGPNYIYPYFSHEI---------LEDEGSQDALPA 292
Query: 284 S 284
S
Sbjct: 293 S 293
>gi|168038664|ref|XP_001771820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676951|gb|EDQ63428.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1106
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 236/567 (41%), Positives = 342/567 (60%), Gaps = 62/567 (10%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
R TGGLVIWR+G+A +YRG Y P V +R E S+ D++
Sbjct: 390 RLTGGLVIWRAGSAAVVYRGKDYVHPFV------LEREEKELLSLDLDEDEE-------- 435
Query: 65 GNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEV---EKLLD 121
L A + S+ + +V T + E +F+ + ++ E+LLD
Sbjct: 436 -QELLMEAGSEVEMESSIEECFDV--------TGDQSGEKEFLMKQGQNADLMMMEELLD 486
Query: 122 GLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLP 181
GLGPRY DW G DP+PVD D+L ++ PFR+LP+GV+ L E T L+RLAR +P
Sbjct: 487 GLGPRYADWKGKDPVPVDGDLLLDSEFKFKRPFRLLPHGVKPKLNDFEMTQLRRLARPVP 546
Query: 182 PHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIK----------- 230
PHF LGR+R L GLA A++KLWEKS I KI +K+GVQ T++E+M E++K
Sbjct: 547 PHFVLGRNRGLDGLAAAIMKLWEKSEIVKIGVKKGVQNTSNEKMAEELKARITSKFPSSR 606
Query: 231 ---KLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFV 287
+LTGGTLL+R+K+++V RGK+FL V AL+ER+R+AK++Q+EEE+ RL V
Sbjct: 607 ITVRLTGGTLLARDKEYIVLSRGKDFLPSAVRVALEERDRMAKAVQEEEERIRLSGRKRV 666
Query: 288 LPSIETIEKSGTAGTLKETLDANSRW--GKRLDDSHKENLVREAEVRRHAYLVQKLEKKL 345
+ ++T GTL+E ++ + W ++ D++ KE + R A + ++ +K+
Sbjct: 667 VQIVDT----SKVGTLEEAMETRAAWEGWQKSDEARKERIAARKAKRGQA--MDRIRQKM 720
Query: 346 ARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVF 405
A +K RA L+K++ P + D E +++ ER+M+R+ GL+ K +LLLGRRGVF
Sbjct: 721 KLALQKKERAMAELAKIDAKTNPTDAPLDKEFLSEAERYMYRQQGLKHKGYLLLGRRGVF 780
Query: 406 DGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYR 465
GTVENMHLHWK+RELVKI+VK +A++ A LE ESGG+LV + SKG A++VYR
Sbjct: 781 GGTVENMHLHWKHRELVKILVKA-PIAEAQQTAKMLERESGGILVDIVNTSKGQAIIVYR 839
Query: 466 GKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKG 525
GK+YQRPS LRP++LLTKR+AL RS+E+QR ++L KH+ L +EIE M +
Sbjct: 840 GKNYQRPSELRPRHLLTKRQALKRSLEVQRMQSLEKHIQI-------LMTEIETMQAGLN 892
Query: 526 TGDEQLYDKLDSAYAT----EDDDSED 548
+EQ D+L++ T ED D+ D
Sbjct: 893 KMEEQ--DELENEAGTQGNLEDFDATD 917
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 92/352 (26%), Positives = 153/352 (43%), Gaps = 46/352 (13%)
Query: 164 TLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSE 223
TL E L+ L L +GR G+ A+ W S +AK+ + + +
Sbjct: 324 TLPEPELRRLRTLGLQLQGRLKIGRLGVTPGIVEAIHDRWRTSELAKVKCDAPLSMNM-K 382
Query: 224 RMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRA 283
+ ED+++LTGG ++ R V YRGK+++ P V E +E+E L+ L ++EEQ L
Sbjct: 383 KAHEDLERLTGGLVIWRAGSAAVVYRGKDYVHPFVLER-EEKELLSLDLDEDEEQELLME 441
Query: 284 SAFVLPSIETIEK----SGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQ 339
+ + +IE+ +G KE L + G+ D E L+ R Y
Sbjct: 442 AGSEVEMESSIEECFDVTGDQSGEKEFL---MKQGQNADLMMMEELLDGLGPR---YADW 495
Query: 340 KLEKKLARAERKLLRAE----RALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKA 395
K + + LL +E R + +KP + D E R+L +
Sbjct: 496 KGKDPVPVDGDLLLDSEFKFKRPFRLLPHGVKP--------KLNDFEMTQLRRLARPVPP 547
Query: 396 FLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQA-KKIALALEAE---------- 444
+LGR DG + W+ E+VKI VK + + +K+A L+A
Sbjct: 548 HFVLGRNRGLDGLAAAIMKLWEKSEIVKIGVKKGVQNTSNEKMAEELKARITSKFPSSRI 607
Query: 445 ----SGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIE 492
+GG L++ DK +V+ RGKD+ PS +R L +R +A++++
Sbjct: 608 TVRLTGGTLLARDK----EYIVLSRGKDFL-PSAVRVA--LEERDRMAKAVQ 652
>gi|242076096|ref|XP_002447984.1| hypothetical protein SORBIDRAFT_06g019250 [Sorghum bicolor]
gi|241939167|gb|EES12312.1| hypothetical protein SORBIDRAFT_06g019250 [Sorghum bicolor]
Length = 800
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 209/414 (50%), Positives = 278/414 (67%), Gaps = 21/414 (5%)
Query: 109 EVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARK 168
EVK +E +KLLDGLGPR++ W G DPLPVDAD+LP IVPGY+ PFR+LP GV L +
Sbjct: 382 EVKLAEEADKLLDGLGPRFSGWWGYDPLPVDADLLPAIVPGYRRPFRLLPSGVPPKLTDR 441
Query: 169 EATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVED 228
E T L+RLA LP H+ALGRS LQGLA +MIKLWE+ +AKIALKR T SE + E+
Sbjct: 442 EMTILRRLAHPLPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTDSELITEE 501
Query: 229 IKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVL 288
IK LTGGTLLSR+K+ +VFYRGK+FL P V+ A+++R +L S + +
Sbjct: 502 IKDLTGGTLLSRDKESIVFYRGKDFLPPAVSLAIEKRRKLGSSTIYKPK----------- 550
Query: 289 PSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARA 348
P IE + LK + D + + + V E + + + +E +L++A
Sbjct: 551 PDIEENMPTQDDSVLKVSNDVS------VHIREEGTSVTEVRAKSLNTVAKNVEARLSQA 604
Query: 349 ERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGT 408
+ RAE+ L ++E++ P + E+I+++ER+M RK+GL+MK FLLLGRRGVFDGT
Sbjct: 605 IAEKERAEKLLEELEKA-SPLSKAEVRETISEDERYMLRKVGLKMKQFLLLGRRGVFDGT 663
Query: 409 VENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKD 468
+ENMHLHWKYRELVKII K + + A LEAESGG+LV+V+K+SKG+A++VYRGK+
Sbjct: 664 IENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVYRGKN 723
Query: 469 YQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNS 522
YQRPS LRPK LL+KR AL RS+E QR ++L HV L N L+ +QMNS
Sbjct: 724 YQRPSKLRPKTLLSKRDALKRSVENQRCKSLKVHVLKLSKNIDYLK---DQMNS 774
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 386 FRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAES 445
+ +G+R++ L +G+ G+ +G V +H W+ E+VK+ + ++ LE ++
Sbjct: 153 LQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKT 212
Query: 446 GGVLVSVDKISKGYAMVVYRGKDYQRP 472
GG+++ G +++YRG +Y+ P
Sbjct: 213 GGLVI----WRSGSTIILYRGTNYKYP 235
>gi|154986383|gb|ABS89145.1| CFM2 [Zea mays]
Length = 942
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 206/417 (49%), Positives = 281/417 (67%), Gaps = 27/417 (6%)
Query: 109 EVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARK 168
EVK +E +KLLDGLGPR++ W G DP+PVDAD+LP IVPGY+ PFR+LP GV L +
Sbjct: 280 EVKLAEEADKLLDGLGPRFSGWWGYDPVPVDADLLPAIVPGYRRPFRLLPSGVPPKLTDR 339
Query: 169 EATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVED 228
E T L+RLA LP H+ALGRS LQGLA +MIKLWE+ +AKIALKR T SE + E+
Sbjct: 340 EMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTDSELITEE 399
Query: 229 IKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVL 288
+K+LTGGTLLSR+K+ +VFYRGK+FL P V+ A+++R +L S + +
Sbjct: 400 VKELTGGTLLSRDKESIVFYRGKDFLPPAVSLAIEKRRKLGSSTIYKAK----------- 448
Query: 289 PSIETIEKSGTAGTLKETLDANSRW---GKRLDDSHKENLVREAEVRRHAYLVQKLEKKL 345
P IE + LK + D + G + ++ E+L + + +E +L
Sbjct: 449 PGIEESMPTQNDSVLKVSSDVSVHVREEGTSVTENRAESL---------NTVAKDVETRL 499
Query: 346 ARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVF 405
++A + +AE+ + ++E++ P + E+I+++ER+M RK+GL+MK FLLLGRRGVF
Sbjct: 500 SQAIAEKAKAEKLIEELEKA-SPLSKAEVRETISEDERYMLRKVGLKMKQFLLLGRRGVF 558
Query: 406 DGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYR 465
DGT+ENMHLHWKYRELVKII K + + A LEAESGG+LV+V+K+SKG+A++VYR
Sbjct: 559 DGTIENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVYR 618
Query: 466 GKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNS 522
GK+Y+RPS LRPK LL+KR AL RS+E QR ++L HV L N LR +QMNS
Sbjct: 619 GKNYKRPSKLRPKTLLSKRDALKRSLENQRCKSLKVHVLKLSKNIDYLR---DQMNS 672
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 93/196 (47%), Gaps = 21/196 (10%)
Query: 386 FRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAES 445
+ +G+R++ L +G+ G+ +G V +H W+ E+VK+ + ++ LE ++
Sbjct: 54 LQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKT 113
Query: 446 GGVLVSVDKISKGYAMVVYRGKDYQRP---STLRPKNLLTKRKALARSIELQRQEALLKH 502
GG+++ G +++YRG +Y P + R + L K + +S E +H
Sbjct: 114 GGLVI----WRSGSTIILYRGTNYTYPYFHHSERVDSFLDKESS-DQSNSGDEDETSSQH 168
Query: 503 VATLE-SNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATEDDDSED---------EGDE 552
++ E S+ + + EQ++ G G+ Q + L+ + + E D + + DE
Sbjct: 169 GSSHEKSSENPVVACAEQIHV--GEGNSQTIEYLNQSLSREKDTNHPVSSIKRLVFDADE 226
Query: 553 AYLEMYAGGNDNEDEI 568
L++ A GN NE +
Sbjct: 227 GNLDIRA-GNPNEQHV 241
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 153 PFRVLPYGVRSTLA-RKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKI 211
P R P + L RK+A +++ P ++GR+ + G+A + ++K +A +
Sbjct: 806 PLRAAPLSNQERLVLRKQALQMKKR-----PVLSIGRNNAITGVAKTIKTHFKKHPLAIV 860
Query: 212 ALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRG 250
+K T ++++ ++++ TG L+SR + ++ YRG
Sbjct: 861 NIKNRADGTPIQQLISELEEATGSVLVSRETNKVILYRG 899
>gi|413918579|gb|AFW58511.1| CFM2 [Zea mays]
Length = 1039
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 206/417 (49%), Positives = 281/417 (67%), Gaps = 27/417 (6%)
Query: 109 EVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARK 168
EVK +E +KLLDGLGPR++ W G DP+PVDAD+LP IVPGY+ PFR+LP GV L +
Sbjct: 377 EVKLAEEADKLLDGLGPRFSGWWGYDPVPVDADLLPAIVPGYRRPFRLLPSGVPPKLTDR 436
Query: 169 EATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVED 228
E T L+RLA LP H+ALGRS LQGLA +MIKLWE+ +AKIALKR T SE + E+
Sbjct: 437 EMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTDSELITEE 496
Query: 229 IKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVL 288
+K+LTGGTLLSR+K+ +VFYRGK+FL P V+ A+++R +L S + +
Sbjct: 497 VKELTGGTLLSRDKESIVFYRGKDFLPPAVSLAIEKRRKLGSSTIYKAK----------- 545
Query: 289 PSIETIEKSGTAGTLKETLDANSRW---GKRLDDSHKENLVREAEVRRHAYLVQKLEKKL 345
P IE + LK + D + G + ++ E+L + + +E +L
Sbjct: 546 PGIEESMPTQNDSVLKVSSDVSVHVREEGTSVTENRAESL---------NTVAKDVETRL 596
Query: 346 ARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVF 405
++A + +AE+ + ++E++ P + E+I+++ER+M RK+GL+MK FLLLGRRGVF
Sbjct: 597 SQAIAEKAKAEKLIEELEKA-SPLSKAEVRETISEDERYMLRKVGLKMKQFLLLGRRGVF 655
Query: 406 DGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYR 465
DGT+ENMHLHWKYRELVKII K + + A LEAESGG+LV+V+K+SKG+A++VYR
Sbjct: 656 DGTIENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVYR 715
Query: 466 GKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNS 522
GK+Y+RPS LRPK LL+KR AL RS+E QR ++L HV L N LR +QMNS
Sbjct: 716 GKNYKRPSKLRPKTLLSKRDALKRSLENQRCKSLKVHVLKLSKNIDYLR---DQMNS 769
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 93/196 (47%), Gaps = 21/196 (10%)
Query: 386 FRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAES 445
+ +G+R++ L +G+ G+ +G V +H W+ E+VK+ + ++ LE ++
Sbjct: 151 LQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKT 210
Query: 446 GGVLVSVDKISKGYAMVVYRGKDYQRP---STLRPKNLLTKRKALARSIELQRQEALLKH 502
GG+++ G +++YRG +Y P + R + L K + +S E +H
Sbjct: 211 GGLVI----WRSGSTIILYRGTNYTYPYFHHSERVDSFLDKESS-DQSNSGDEDETSSQH 265
Query: 503 VATLE-SNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATEDDDSED---------EGDE 552
++ E S+ + + EQ++ G G+ Q + L+ + + E D + + DE
Sbjct: 266 GSSHEKSSENPVVACAEQIHV--GEGNSQTIEYLNQSLSREKDTNHPVSSIKRLVFDADE 323
Query: 553 AYLEMYAGGNDNEDEI 568
L++ A GN NE +
Sbjct: 324 GNLDIRA-GNPNEQHV 338
Score = 42.7 bits (99), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 153 PFRVLPYGVRSTLA-RKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKI 211
P R P + L RK+A +++ P ++GR+ + G+A + ++K +A +
Sbjct: 903 PLRAAPLSNQERLVLRKQALQMKKR-----PVLSIGRNNAITGVAKTIKTHFKKHPLAIV 957
Query: 212 ALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRG 250
+K T ++++ ++++ TG L+SR + ++ YRG
Sbjct: 958 NIKNRADGTPIQQLISELEEATGSVLVSRETNKVILYRG 996
>gi|225452088|ref|XP_002280704.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 1184
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 214/495 (43%), Positives = 305/495 (61%), Gaps = 7/495 (1%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
KT GLVIW + +YRG +Y+ S K + + + S + Q + + ++
Sbjct: 268 KTRGLVIWSKKDTLVVYRGSNYQSTSKHFQK--MRPGLVAGADASNSKLNQSNFEDDLTI 325
Query: 66 NSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGP 125
+ + T + D + T + +E + Q V YE E ++LLDGLGP
Sbjct: 326 SEIKFHESTTGEKMGRKDGEEDSSPTGIFMEEMVDSQP---VNGSLYEREADRLLDGLGP 382
Query: 126 RYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFA 185
R+ DW PLPVDAD+LP ++PG++PPFR+ P RS L E T L++LA LP HF
Sbjct: 383 RFIDWWRPKPLPVDADLLPEVLPGFRPPFRLSPPQTRSKLTDDELTYLRKLAYALPTHFV 442
Query: 186 LGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFL 245
LGR+R+LQGLA A++KLWEKS I KIA+K G+ T +E+M ++K LTGG LL RNK F+
Sbjct: 443 LGRNRKLQGLAAAILKLWEKSLIVKIAIKWGIPNTKNEQMANELKCLTGGVLLLRNKFFI 502
Query: 246 VFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKE 305
+ YRGK+FL V + ERE K Q EE ARL+A + + + + T GTL E
Sbjct: 503 ILYRGKDFLPCRVANLIVEREMEFKGCQIREEDARLKAIETSFVTDKPLANTSTTGTLSE 562
Query: 306 TLDANSRWGKRLDDSHKENLVR-EAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEE 364
+ + + + L D + E V EAE R ++K E+ L +RK+ R+ + L+K+
Sbjct: 563 FQNIETEF-RGLKDGNTEIEVELEAEKERLEKELKKQERNLFILKRKIERSAKVLAKLNS 621
Query: 365 SLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI 424
+ +PA+ AD E IT+EER FRK+G +M + LLLGRRGVFDG +E +H HWK+RE+VK+
Sbjct: 622 AWRPADHDADKEMITEEERECFRKIGQKMDSSLLLGRRGVFDGVIEGLHQHWKHREIVKV 681
Query: 425 IVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKR 484
I ++F Q A LE+ESGGVLVS+DK+ +G+A+++YRGK+Y+RP L PKNLLTKR
Sbjct: 682 ITMQRSFSQVLYTAKLLESESGGVLVSIDKLKEGHAIIIYRGKNYRRPIKLVPKNLLTKR 741
Query: 485 KALARSIELQRQEAL 499
+AL RS+E+QR +L
Sbjct: 742 EALNRSLEMQRIGSL 756
Score = 42.7 bits (99), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 15/117 (12%)
Query: 360 SKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYR 419
+K E+ + AE DP + ER R ++M+ ++ + + GV + V+ +H+ WK
Sbjct: 189 TKKEKVVTAAELTLDPMLL---ERL--RGEAVKMRKWVKVKKAGVTESVVDQIHMVWKSD 243
Query: 420 ELVKI---IVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPS 473
EL + + + D+A++I LE ++ G+++ SK +VVYRG +YQ S
Sbjct: 244 ELAMVKFDMPLCRNMDRAREI---LEIKTRGLVI----WSKKDTLVVYRGSNYQSTS 293
>gi|326497411|dbj|BAK05795.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1070
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 209/439 (47%), Positives = 294/439 (66%), Gaps = 19/439 (4%)
Query: 109 EVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARK 168
EVK E +KLLDGLGPR+++W G DPLPVDAD+LP IVPG++ PFR+LP GV L +
Sbjct: 396 EVKLAKEDDKLLDGLGPRFSEWWGYDPLPVDADLLPAIVPGFRRPFRLLPSGVPPKLTDR 455
Query: 169 EATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVED 228
E T L+RLAR LP H+ALGRS LQGLA ++IKLWE+ +AKIA+KRG SE + E+
Sbjct: 456 EMTILRRLARPLPYHYALGRSSNLQGLAASIIKLWERCEVAKIAMKRGPYCIDSELVSEE 515
Query: 229 IKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVL 288
+K LTGGTLLSR+ + +V YRGK+FL V+ A+++R + S+ ++ +
Sbjct: 516 LKGLTGGTLLSRDNESIVLYRGKDFLPQAVSLAIEKRRKHDNSMINKPK----------- 564
Query: 289 PSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARA 348
P IE + A LK DA S G + E V E + Q +E +L++A
Sbjct: 565 PEIEESIPTQDASELKIANDA-SVHGHECHEG--ETSVSEYRTESLNTVAQNMETRLSQA 621
Query: 349 ERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGT 408
+ +AE+ L ++E++ + ++ + E I++EER+M RK+GL+MK FLLLGRRGVFDGT
Sbjct: 622 LTEKEKAEKLLEELEKASRSSKAETR-EVISEEERYMLRKVGLQMKPFLLLGRRGVFDGT 680
Query: 409 VENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKD 468
+ENMHLHWKYRELVKII K + + A LEAESGG+LV+V+++SKG+A+++YRGK+
Sbjct: 681 IENMHLHWKYRELVKIICKEHSMEDVTYAARTLEAESGGILVAVERVSKGHAIIMYRGKN 740
Query: 469 YQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGD 528
YQRPS+LRPK+LL K+ AL RS+ELQR+++L HV L N LR ++ MNS G +
Sbjct: 741 YQRPSSLRPKSLLNKKDALKRSVELQRRKSLKLHVLNLSKNIDYLRGQL--MNS--GHEN 796
Query: 529 EQLYDKLDSAYATEDDDSE 547
+ ++D D++ + + E
Sbjct: 797 KGMHDLCDNSRTSGETSKE 815
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 386 FRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAES 445
+ +G+R++ L +G+ GV +G V +H W+ ELVKI + ++ LE ++
Sbjct: 150 LQGVGIRLRKRLKVGKPGVTEGIVNGIHERWRNAELVKIRCDDISAMNMRRTHEVLERKT 209
Query: 446 GGVLVSVDKISKGYAMVVYRGKDYQRP 472
GG+++ G +++YRG +Y+ P
Sbjct: 210 GGLVI----WRSGSTIILYRGTNYKYP 232
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 22/26 (84%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVP 30
RKTGGLVIWRSG+ + LYRG +Y+ P
Sbjct: 207 RKTGGLVIWRSGSTIILYRGTNYKYP 232
Score = 42.7 bits (99), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 153 PFRVLPYGVRSTLA-RKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKI 211
P + P R L RK+A +++ P A+GR+ + G+A + ++K +A +
Sbjct: 934 PSKAAPLSNRERLVLRKQALQMKKR-----PVLAIGRNNVITGVAKTIRTHFKKHPLAVV 988
Query: 212 ALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRG 250
+K T ++++ ++++ TG L+SR + ++ YRG
Sbjct: 989 NIKNRADGTPVQQLISELEEATGSVLVSREPNKVILYRG 1027
>gi|449441730|ref|XP_004138635.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 760
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 213/504 (42%), Positives = 299/504 (59%), Gaps = 34/504 (6%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
KTGG+V+W A+ +YRG +Y + ++ +T KQ+H IS
Sbjct: 255 KTGGMVVWSKKNALVVYRGCNYPL------------------NLKHSTKKQVH--IS-PQ 293
Query: 66 NSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDF--VREVK--------YEDE 115
N + D +++S N +N E+ + F +R YE E
Sbjct: 294 NPVKVETDTHFSLSGHYESGLN---RSINDNDGEWEEASSFFLIRHENLQPLSGSLYERE 350
Query: 116 VEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQR 175
++LLD LGPR+ DW PLPVDADMLP +VPGY PPFR P + L +L++
Sbjct: 351 TDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPYTKQNLTDAGLQHLRK 410
Query: 176 LARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGG 235
LA LP HF LGR+R+LQGLA +++KLWEKS IAKIALK GV T +E+M ++K LTGG
Sbjct: 411 LAHSLPTHFVLGRNRKLQGLAASILKLWEKSMIAKIALKWGVPNTDNEQMALELKNLTGG 470
Query: 236 TLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIE 295
TLL RNK ++ YRG +FL V +++ +RE + Q EE +RL+AS F E +E
Sbjct: 471 TLLLRNKFVIILYRGNDFLPVGVADSIIQREVELQRWQLHEENSRLKASEFFCFDTENME 530
Query: 296 KSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRA 355
+ G AGTL + D + S + L EAE + ++ E++L K+ ++
Sbjct: 531 ERGKAGTLSDFKDITVGYEDLSTGSTESRLQAEAEKGKIIRGLRMQERRLKILNFKVEKS 590
Query: 356 ERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLH 415
+ L+K+ S + E AD E IT+EER FRK+GL+M + L LGRRGVFDG +E +H H
Sbjct: 591 TKELTKLNASWRRVEPDADQELITNEERICFRKMGLKMDSCLTLGRRGVFDGVIEGLHQH 650
Query: 416 WKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTL 475
WK+RE+VK+I + F+Q A LEAESGG+LVSVDK+ +GYA++++RGK+Y+RP
Sbjct: 651 WKHREVVKVITMQRAFNQVNYTAKLLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHS 710
Query: 476 RPKNLLTKRKALARSIELQRQEAL 499
KNLLTKRKAL+RS+E+QR +L
Sbjct: 711 VSKNLLTKRKALSRSLEMQRIGSL 734
>gi|449490080|ref|XP_004158502.1| PREDICTED: LOW QUALITY PROTEIN: chloroplastic group IIA intron
splicing facilitator CRS1, chloroplastic-like [Cucumis
sativus]
Length = 760
Score = 370 bits (949), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 212/504 (42%), Positives = 298/504 (59%), Gaps = 34/504 (6%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
KTGG+V+W A+ +YRG +Y + ++ +T KQ+H IS
Sbjct: 255 KTGGMVVWSKKNALVIYRGCNYPL------------------NLKHSTKKQVH--IS-PQ 293
Query: 66 NSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDF--VREVK--------YEDE 115
N + D +++S N +N E+ + F +R YE E
Sbjct: 294 NPVKVETDTHFSLSGHYESGLN---RSINDNDGEWEEASSFFLIRHENLQPLSGSLYERE 350
Query: 116 VEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQR 175
++LLD LGPR+ DW PLPVDADML +VPGY PPFR P + L +L++
Sbjct: 351 TDRLLDDLGPRFIDWWMHKPLPVDADMLQEVVPGYMPPFRRCPPYTKQNLTDAGLQHLRK 410
Query: 176 LARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGG 235
LA LP HF LGR+R+LQGLA +++KLWEKS IAKIALK GV T +E+M ++K LTGG
Sbjct: 411 LAHSLPTHFVLGRNRKLQGLAASILKLWEKSMIAKIALKWGVPNTDNEQMALELKNLTGG 470
Query: 236 TLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIE 295
TLL RNK ++ YRG +FL V +++ +RE + Q EE +RL+AS F E +E
Sbjct: 471 TLLLRNKFVIILYRGNDFLPVGVADSIIQREVELQRWQLHEENSRLKASEFFCFDTENME 530
Query: 296 KSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRA 355
+ G AGTL + D + S + L EAE + ++ E++L K+ ++
Sbjct: 531 ERGKAGTLSDFKDITVGYEDLSTGSTESRLQAEAEKXKIIRGLRMQERRLKILNFKVEKS 590
Query: 356 ERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLH 415
+ L+K+ S + E AD E IT+EER FRK+GL+M + L LGRRGVFDG +E +H H
Sbjct: 591 TKELTKLNASWRRVEPDADQELITNEERICFRKMGLKMDSCLTLGRRGVFDGVIEGLHQH 650
Query: 416 WKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTL 475
WK+RE+VK+I + F+Q A LEAESGG+LVSVDK+ +GYA++++RGK+Y+RP
Sbjct: 651 WKHREVVKVITMQRAFNQVNYTAKLLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHS 710
Query: 476 RPKNLLTKRKALARSIELQRQEAL 499
KNLLTKRKAL+RS+E+QR +L
Sbjct: 711 VSKNLLTKRKALSRSLEMQRIGSL 734
>gi|154986387|gb|ABS89147.1| CFM2 alternative polyadenylation form 2 [Zea mays]
Length = 783
Score = 369 bits (946), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 195/392 (49%), Positives = 266/392 (67%), Gaps = 18/392 (4%)
Query: 109 EVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARK 168
EVK +E +KLLDGLGPR++ W G DP+PVDAD+LP IVPGY+ PFR+LP GV L +
Sbjct: 370 EVKLAEEADKLLDGLGPRFSGWWGYDPVPVDADLLPAIVPGYRRPFRLLPSGVPPKLTDR 429
Query: 169 EATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVED 228
E T L+RLA LP H+ALGRS LQGLA +MIKLWE+ +AKIALKR T SE + E+
Sbjct: 430 EMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTDSELITEE 489
Query: 229 IKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVL 288
+K+LTGGTLLSR+K+ +VFYRGK+FL P V+ A+++R +L S + +
Sbjct: 490 VKELTGGTLLSRDKESIVFYRGKDFLPPAVSLAIEKRRKLGSSTIYKAK----------- 538
Query: 289 PSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARA 348
P IE + LK + D + + + V E + + +E +L++A
Sbjct: 539 PGIEESMPTQNDSVLKVSSDVS------VHVREEGTSVTENRAGSLNTVAKDVETRLSQA 592
Query: 349 ERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGT 408
+ +AE+ + ++E++ P + E+I+++ER+M RK+GL+MK FLLLGRRGVFDGT
Sbjct: 593 IAEKAKAEKLIEELEKA-SPLSKAEVRETISEDERYMLRKVGLKMKQFLLLGRRGVFDGT 651
Query: 409 VENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKD 468
+ENMHLHWKYRELVKII K + + A LEAESGG+LV+V+K+SKG+A++VYRGK+
Sbjct: 652 IENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVYRGKN 711
Query: 469 YQRPSTLRPKNLLTKRKALARSIELQRQEALL 500
Y+RPS LRPK LL+KR AL RS+E QR + L
Sbjct: 712 YKRPSKLRPKTLLSKRDALKRSLENQRCKVWL 743
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 93/196 (47%), Gaps = 21/196 (10%)
Query: 386 FRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAES 445
+ +G+R++ L +G+ G+ +G V +H W+ E+VK+ + ++ LE ++
Sbjct: 144 LQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKT 203
Query: 446 GGVLVSVDKISKGYAMVVYRGKDYQRP---STLRPKNLLTKRKALARSIELQRQEALLKH 502
GG+++ G +++YRG +Y P + R + L K + +S E +H
Sbjct: 204 GGLVI----WRSGSTIILYRGTNYTYPYFHHSERVDSFLDKESS-DQSNSGDEDETSSQH 258
Query: 503 VATLE-SNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATEDDDSED---------EGDE 552
++ E S+ + + EQ++ G G+ Q + L+ + + E D + + DE
Sbjct: 259 GSSHEKSSENPVVACAEQIHV--GEGNSQTIEYLNQSLSREKDTNHPVSSIKRLVFDADE 316
Query: 553 AYLEMYAGGNDNEDEI 568
L++ A GN NE +
Sbjct: 317 GNLDIRA-GNPNEQHV 331
>gi|296087258|emb|CBI33632.3| unnamed protein product [Vitis vinifera]
Length = 529
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 190/388 (48%), Positives = 263/388 (67%)
Query: 112 YEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEAT 171
YE E ++LLDGLGPR+ DW PLPVDAD+LP ++PG++PPFR+ P RS L E T
Sbjct: 70 YEREADRLLDGLGPRFIDWWRPKPLPVDADLLPEVLPGFRPPFRLSPPQTRSKLTDDELT 129
Query: 172 NLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKK 231
L++LA LP HF LGR+R+LQGLA A++KLWEKS I KIA+K G+ T +E+M ++K
Sbjct: 130 YLRKLAYALPTHFVLGRNRKLQGLAAAILKLWEKSLIVKIAIKWGIPNTKNEQMANELKC 189
Query: 232 LTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSI 291
LTGG LL RNK F++ YRGK+FL V + ERE K Q EE ARL+A +
Sbjct: 190 LTGGVLLLRNKFFIILYRGKDFLPCRVANLIVEREMEFKGCQIREEDARLKAIETSFVTD 249
Query: 292 ETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERK 351
+ + + T GTL E + + + D + + + EAE R ++K E+ L +RK
Sbjct: 250 KPLANTSTTGTLSEFQNIETEFRGLKDGNTEIEVELEAEKERLEKELKKQERNLFILKRK 309
Query: 352 LLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVEN 411
+ R+ + L+K+ + +PA+ AD E IT+EER FRK+G +M + LLLGRRGVFDG +E
Sbjct: 310 IERSAKVLAKLNSAWRPADHDADKEMITEEERECFRKIGQKMDSSLLLGRRGVFDGVIEG 369
Query: 412 MHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQR 471
+H HWK+RE+VK+I ++F Q A LE+ESGGVLVS+DK+ +G+A+++YRGK+Y+R
Sbjct: 370 LHQHWKHREIVKVITMQRSFSQVLYTAKLLESESGGVLVSIDKLKEGHAIIIYRGKNYRR 429
Query: 472 PSTLRPKNLLTKRKALARSIELQRQEAL 499
P L PKNLLTKR+AL RS+E+QR +L
Sbjct: 430 PIKLVPKNLLTKREALNRSLEMQRIGSL 457
>gi|302768979|ref|XP_002967909.1| hypothetical protein SELMODRAFT_61058 [Selaginella moellendorffii]
gi|300164647|gb|EFJ31256.1| hypothetical protein SELMODRAFT_61058 [Selaginella moellendorffii]
Length = 557
Score = 365 bits (937), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 208/497 (41%), Positives = 301/497 (60%), Gaps = 41/497 (8%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
++TGGLVIWR+GTA+ +YRG Y P K +P SVS+ + S+
Sbjct: 98 KRTGGLVIWRAGTALVIYRGKDYAGPP--------KERWIPTESVSKPKE-------SVE 142
Query: 65 GNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLG 124
S + + + F + N F+ E +YE ++++LL LG
Sbjct: 143 KPEKSHVSGELLGIDTQFKEFVN---------------HIPFI-EAEYEMQMDRLLAELG 186
Query: 125 PRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHF 184
PRY DW G P+PVD D LP I ++ P+R+LPYG+ L+ KE TNL RLAR +PP F
Sbjct: 187 PRYADWKGDRPVPVDGDKLPAIDHNFKSPYRLLPYGMEPKLSDKEFTNLVRLARQMPPQF 246
Query: 185 ALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDF 244
+ R++ LQGLA AM+KLWEK+ I K+A+K+ VQ T + +M +++K+LTG LL R K
Sbjct: 247 VISRNKGLQGLAKAMVKLWEKTEITKVAIKQSVQSTDNAKMADELKRLTGCVLLGREKTH 306
Query: 245 LVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLK 304
++FYRGK+FL + A +ERE ++ + +D E++AR+ LP+ + EK
Sbjct: 307 MIFYRGKDFLPAPIAAAFEEREAMSFANKDVEDKARM------LPTGKVTEKIVHVEQRP 360
Query: 305 ETLDANSR---WGKRLDDSHKENLV-REAEVRRHAYLVQKLEKKLARAERKLLRAERALS 360
+ +A+ + W K ++ + +V + A R + ++L+ + A RK +AE ALS
Sbjct: 361 QETEADIKLKEWIKNQEEEKRRAIVMKAARAARARRIERRLDIVSSFAIRKKEKAEEALS 420
Query: 361 KVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRE 420
KVE+ +KP E D E+IT+EER+ +++GL+MKAFLLLGRRGV+ G +ENMHLHWKYRE
Sbjct: 421 KVEKLMKPREPSEDRETITEEERYTLQRVGLKMKAFLLLGRRGVYSGIIENMHLHWKYRE 480
Query: 421 LVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNL 480
LVK++ K K + A +E ESGG+L+ + +SKG + YRGK+Y+RP LRP NL
Sbjct: 481 LVKVVYKGKDRMDIEDTAKMIECESGGILIGIYPVSKGQVFLYYRGKNYRRPEELRPHNL 540
Query: 481 LTKRKALARSIELQRQE 497
LTKRKALAR E QR+E
Sbjct: 541 LTKRKALARYTETQRRE 557
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 12/125 (9%)
Query: 357 RALSKVEESLKPAERQADPESIT-----DEERFMFRKLGLRMKAFLLLGRRGVFDGTVEN 411
+ALS EE +R+ P S+ D E R + + K + + + G+ V+
Sbjct: 10 KALSGEEEQ---PQRRVRPPSLAELVLPDAELRRLRTMIIHTKERIKVKKLGITRNVVQA 66
Query: 412 MHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQR 471
+H W+ E+VK+ + +K+ LE +GG+++ G A+V+YRGKDY
Sbjct: 67 IHQKWRTSEIVKLKCDQEVAMNMRKVHEELEKRTGGLVIW----RAGTALVIYRGKDYAG 122
Query: 472 PSTLR 476
P R
Sbjct: 123 PPKER 127
>gi|326492786|dbj|BAJ90249.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 730
Score = 362 bits (929), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 207/503 (41%), Positives = 304/503 (60%), Gaps = 25/503 (4%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
K+GGLV+W G +YRG SY K I +P + + H+
Sbjct: 222 KSGGLVVWTKGDVHFVYRGSSYLENIKHRQKSIADIQRVPLEKCTAPGPQWKHE------ 275
Query: 66 NSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGP 125
S A T N D++ +L + E+ V YE EV +LLD LGP
Sbjct: 276 ---SNAEPSTNH---NDDAHGVFRGIDPSLAVHAYEEP---VEGTLYEREVNRLLDSLGP 326
Query: 126 RYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFA 185
R+ DW PLPVDAD+LP +VPG++ PFR P GVR TLA +E T L++LAR LP HFA
Sbjct: 327 RFVDWWWNTPLPVDADLLPEVVPGFKTPFRQCPPGVRPTLADEELTYLRKLARPLPTHFA 386
Query: 186 LGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFL 245
LGR+ +LQGLA A++KLWEKS IAKIA+K G+Q T +E+M ++K LTGGT++ RNKDF+
Sbjct: 387 LGRNTRLQGLAAAVLKLWEKSLIAKIAVKVGIQNTNNEQMAWNLKHLTGGTIILRNKDFV 446
Query: 246 VFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRA----SAFV-LPSIETIEKSGTA 300
+ YRGK+FL V +++ E+E + Q +EE+ARL F LPS E+ +
Sbjct: 447 ILYRGKDFLPGGVKQSVIEQEARVYAQQVKEEEARLMVMDSLKMFAGLPSEES-----SV 501
Query: 301 GTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALS 360
G+ +E D + +++ + EAE R ++ E++L +K+ R+ AL+
Sbjct: 502 GSFREYQDFQLNHVQETTENNMALIELEAEKHRLEKELKDQERRLFILTKKIERSNEALA 561
Query: 361 KVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRE 420
K+ S P+E+ AD E +T+EER +FRK+GL+M +LLGRRG+FDG +E +H HWK++E
Sbjct: 562 KLHNSWNPSEQSADKELLTEEERMIFRKIGLKMDEHVLLGRRGIFDGVIEEIHQHWKHKE 621
Query: 421 LVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNL 480
+VK+I K Q ++ LE E+GG+L++ K++ +A+++YRGK+Y RP+ P NL
Sbjct: 622 IVKVITKQNQAYQITYTSMLLEVETGGMLIATQKLTNSHAIILYRGKNYHRPTKSSPSNL 681
Query: 481 LTKRKALARSIELQRQEALLKHV 503
LTKR+AL RS+E+QR+ ++ +V
Sbjct: 682 LTKREALRRSVEVQRRGSMKYYV 704
>gi|357145812|ref|XP_003573775.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 730
Score = 360 bits (924), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 204/503 (40%), Positives = 304/503 (60%), Gaps = 33/503 (6%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
KTGGLV+W G +YRG Y ++ Y N + + ++ + + G
Sbjct: 230 KTGGLVVWTKGDIHFVYRGSDY------VHNMKYSHNFVADIQKVRTPQEKYKSNVELLG 283
Query: 66 NSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGP 125
A + S+ D ++T E V+ YE EV +LLD LGP
Sbjct: 284 KHNGKAKGAFREKDSSID-----------IQTYEEP-----VKGTLYEREVNRLLDSLGP 327
Query: 126 RYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFA 185
R+ DW PLPVDAD+LP +V G++ PFR P GVR TLA +E T L++LAR LP HFA
Sbjct: 328 RFIDWWWNTPLPVDADLLPEVVLGFKTPFRQCPPGVRPTLADEELTYLRKLARPLPAHFA 387
Query: 186 LGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFL 245
LGR+ +LQGLA A++KLWEKS +AKIA+K G++ T +E+M ++K LTGGT++ RNKDF+
Sbjct: 388 LGRNTKLQGLAAAILKLWEKSLVAKIAVKVGIENTNNEQMAWNLKHLTGGTIILRNKDFI 447
Query: 246 VFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFV-----LPSIETIEKSGTA 300
+ YRGK+FL V +++ + E + Q +EE+ARL + + LPS+E+ +A
Sbjct: 448 ILYRGKDFLPAGVKQSVIQHEAQVDAQQVKEEEARLSGTESLQMFAGLPSVES-----SA 502
Query: 301 GTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALS 360
GT +E D ++K + EAE R ++ E++L +K+ R+ +AL+
Sbjct: 503 GTFREYQDFQVNQAHETTINNKAMIELEAEKHRLEKELKDQERRLFILTKKIERSNQALA 562
Query: 361 KVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRE 420
K+ S P+E+ AD E +T+EER +FRK+GL+M +LLGRRGVFDG +E +H HWK++E
Sbjct: 563 KLHSSWNPSEQSADKELLTEEERMIFRKIGLKMDEHVLLGRRGVFDGVIEEIHQHWKHKE 622
Query: 421 LVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNL 480
+VK+I K Q ++ LE E+GGVL++ K+ +A+++YRGK+Y+RP P NL
Sbjct: 623 IVKVITKQNQSYQITYTSMLLEVETGGVLIATQKLPHSHAIILYRGKNYRRPEK-SPSNL 681
Query: 481 LTKRKALARSIELQRQEALLKHV 503
LTKR+AL RS+E+QR+ ++ +V
Sbjct: 682 LTKREALRRSVEVQRRGSMKYYV 704
>gi|414870652|tpg|DAA49209.1| TPA: chloroplast RNA splicing1 [Zea mays]
Length = 715
Score = 360 bits (923), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 201/497 (40%), Positives = 300/497 (60%), Gaps = 51/497 (10%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
KTGGLV+W G +YRG Y Q K H ++
Sbjct: 237 KTGGLVVWTKGDMHFVYRGSKY-----------------------QQNAKHSHTFLT--- 270
Query: 66 NSLSAAADKTAQDPSNFDSYNNVH---ATQVNLETASEEQETDFVREVKYEDEVEKLLDG 122
NVH A Q N ++ +++ + V+ YE EV +LLD
Sbjct: 271 ---------------------NVHKDDAFQENDQSICGQKDEEPVKGTLYEREVNRLLDT 309
Query: 123 LGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPP 182
LGPR+ DW PLPVDAD+LP VPG++ P+R+ P GVR TLA +E T L++LAR+LP
Sbjct: 310 LGPRFVDWWWDTPLPVDADLLPEFVPGFKTPYRLCPPGVRPTLADEELTYLRKLARLLPT 369
Query: 183 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNK 242
HFALGR+ +LQGLA A++KLWEKS IAKIA+K G+Q T +E+M ++K LTGGT++ RNK
Sbjct: 370 HFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQMAWNLKHLTGGTVILRNK 429
Query: 243 DFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGT 302
DF++ YRGK+FL V + + +RE Q +EE+ARL+A L + + + + GT
Sbjct: 430 DFIILYRGKDFLPGGVAQTVIQREAQVHDEQVKEEEARLKA-VDSLQMVGELSEESSLGT 488
Query: 303 LKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKV 362
+E ++++ ++ + EAE R ++ E KL+ +K+ R+ +AL+K+
Sbjct: 489 FREYQGFHAKFVHENTENSNTMIELEAEKYRLEKELKDHEWKLSVLNKKIERSNQALAKL 548
Query: 363 EESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELV 422
S P+E+ AD E +T+EE+ MFR++G +M +LLGRRG+FDG +E +H HWK++E+V
Sbjct: 549 HSSWSPSEQSADREHLTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVV 608
Query: 423 KIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLT 482
K+I K Q A LE E+GG+L++V+K++ +A+++YRGK+Y+RP+ NLLT
Sbjct: 609 KVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTSHAIILYRGKNYRRPAKSSFSNLLT 668
Query: 483 KRKALARSIELQRQEAL 499
KR+AL RSIE+QR+ ++
Sbjct: 669 KREALRRSIEVQRRGSM 685
>gi|326499694|dbj|BAJ86158.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 730
Score = 359 bits (921), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 206/503 (40%), Positives = 303/503 (60%), Gaps = 25/503 (4%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
K+GGLV+W G +YRG SY K I +P + + H+
Sbjct: 222 KSGGLVVWTKGDVHFVYRGSSYLENIKHRQKSIADIQRVPLEKCTAPGPQWKHE------ 275
Query: 66 NSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGP 125
S A T N D++ +L + E+ V YE EV +LLD LGP
Sbjct: 276 ---SNAEPSTNH---NDDAHGVFRGIDPSLAVHAYEEP---VEGTLYEREVNRLLDSLGP 326
Query: 126 RYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFA 185
R+ DW PLPVDAD+LP +VPG++ PFR P GVR TLA +E T L++LAR LP HFA
Sbjct: 327 RFVDWWWNTPLPVDADLLPEVVPGFKTPFRQCPPGVRPTLADEELTYLRKLARPLPTHFA 386
Query: 186 LGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFL 245
LGR+ +LQGLA A++KLWEKS IAKIA+K G+Q T +E+M ++K LTGGT++ RNKDF+
Sbjct: 387 LGRNTRLQGLAAAVLKLWEKSLIAKIAVKVGIQNTNNEQMAWNLKHLTGGTIILRNKDFV 446
Query: 246 VFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRA----SAFV-LPSIETIEKSGTA 300
+ YRGK+FL V +++ E+E + Q +EE+ARL F LPS E+ +
Sbjct: 447 ILYRGKDFLPGGVKQSVIEQEARVYAQQVKEEEARLMVMDSLKMFAGLPSEES-----SV 501
Query: 301 GTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALS 360
G+ +E D + +++ + EAE R ++ E++L +K+ R+ AL+
Sbjct: 502 GSFREYQDFQLNHVQETTENNMALIELEAEKHRLEKELKDQERRLFILTKKIERSNEALA 561
Query: 361 KVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRE 420
K+ S P+E+ AD E +T+EER +FRK+GL+M +LLGRRG+FDG +E +H HWK++E
Sbjct: 562 KLHNSWNPSEQSADKELLTEEERMIFRKIGLKMDEHVLLGRRGIFDGVIEEIHQHWKHKE 621
Query: 421 LVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNL 480
+VK+I K Q ++ LE E+GG+L++ K++ +A+++YRGK+Y RP+ P NL
Sbjct: 622 IVKVITKQNQAYQITYTSMLLEVETGGMLIATQKLTNSHAIILYRGKNYHRPTKSSPSNL 681
Query: 481 LTKRKALARSIELQRQEALLKHV 503
TKR+AL RS+E+QR+ ++ +V
Sbjct: 682 RTKREALRRSVEVQRRGSMKYYV 704
>gi|357521157|ref|XP_003630867.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355524889|gb|AET05343.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 676
Score = 359 bits (921), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 207/498 (41%), Positives = 286/498 (57%), Gaps = 69/498 (13%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
R+TGGLVIWRSG+ + +YRG SY+ P T+ H+ S
Sbjct: 213 RRTGGLVIWRSGSVMWVYRGKSYQGP----------------------TNGNQHE--SKG 248
Query: 65 GNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLG 124
G+ S + Q P N E E ++LD G
Sbjct: 249 GDEKSESVVLNQQQPENM---------------------------TPEEAEFNRMLDDFG 281
Query: 125 PRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHF 184
PR+ DW G LPVDAD+LP +PGY+ P R+LP + L E T + +LA+ LP HF
Sbjct: 282 PRFVDWWGTGILPVDADLLPPTIPGYRTPLRILPARMHPRLTNDEHTKMLKLAKALPCHF 341
Query: 185 ALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDF 244
ALGR+R LQGLA A++KLWEKS +AKIA+K GVQ T +E M ++KKLTGGTLL RNK +
Sbjct: 342 ALGRNRNLQGLACAILKLWEKSLVAKIAVKLGVQNTNNELMALELKKLTGGTLLLRNKYY 401
Query: 245 LVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLK 304
++ YRGK+F+ V L ER +E + RA V S E E S AG++
Sbjct: 402 ILIYRGKDFIPTSVAAILSER----------QENVQCRA---VDVSGED-ETSAQAGSMA 447
Query: 305 ETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLA----RAERKLLRAERALS 360
E +A + G+ + E +++EA + L++K+E+K A + K RAE+ L+
Sbjct: 448 EFNEAQALCGREISTEECEKMMKEAAEATNVRLMKKIERKPAVIHEHTDTKKSRAEKLLA 507
Query: 361 KVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRE 420
K++ S+ P E+ITDEER MFR +GLR+K +L L GVFD +ENMHLHW+ RE
Sbjct: 508 KIDSSMVPVGPDNRRETITDEERVMFRVVGLRLKVYLQLDTLGVFDSVIENMHLHWRQRE 567
Query: 421 LVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNL 480
LVK+I K K+ ++ A LE +SGG+LV++D++ KG++++ YRGKDY+RP TLR +NL
Sbjct: 568 LVKLITKQKSLAFVEETASLLEYKSGGILVAIDRLPKGFSLIYYRGKDYKRPITLRHRNL 627
Query: 481 LTKRKALARSIELQRQEA 498
LTK KAL SI +QR E+
Sbjct: 628 LTKTKALQHSISMQRHES 645
>gi|302761182|ref|XP_002964013.1| hypothetical protein SELMODRAFT_20706 [Selaginella moellendorffii]
gi|300167742|gb|EFJ34346.1| hypothetical protein SELMODRAFT_20706 [Selaginella moellendorffii]
Length = 555
Score = 357 bits (917), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 208/502 (41%), Positives = 300/502 (59%), Gaps = 54/502 (10%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
++TGGLVIWR+G A+ +YRG Y P K +P SVS+ + S+
Sbjct: 99 KRTGGLVIWRAGAALVIYRGKDYAGPP--------KERWIPTESVSKPKE-------SVE 143
Query: 65 GNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLG 124
S + + + F + N F+ E +YE ++++LL LG
Sbjct: 144 KPEKSHVSGELLGIDTQFKEFVN---------------HIPFI-EAEYEMQMDRLLAELG 187
Query: 125 PRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHF 184
PRY DW G P+PVD D LP I ++ P+R+LPYG+ L+ +E TNL RLAR +PP F
Sbjct: 188 PRYADWKGDRPVPVDGDKLPAIDHNFKSPYRLLPYGMEPKLSDREFTNLVRLARQMPPQF 247
Query: 185 ALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDF 244
+ R++ LQGLA AM+KLWEK+ I K+A+K+ VQ T + +M +++K+LTG LL R K
Sbjct: 248 VISRNKGLQGLAKAMVKLWEKTEITKVAIKQSVQSTDNAKMADELKRLTGCVLLGREKTH 307
Query: 245 LVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLK 304
++FYRGK+FL + A +ERE ++ + +D E++AR+ LP+ + EK
Sbjct: 308 MIFYRGKDFLPAPIAAAFEEREAMSFANKDVEDKARM------LPTGKVTEKIVHVEQRP 361
Query: 305 ETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQ--------KLEKKLARAERKLLRAE 356
+ +A D KE + + E +R A +++ ++E++L A RK +AE
Sbjct: 362 QETEA--------DIKLKEWIKNQEEEKRRAIVMKAARAARARRIERRLDIAVRKKEKAE 413
Query: 357 RALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLL-GRRGVFDGTVENMHLH 415
ALSKVE+ +KP E D E+IT+EER+ +++GL+MKAFLLL GRRGV+ G +ENMHLH
Sbjct: 414 EALSKVEKLMKPREPSEDRETITEEERYTLQRVGLKMKAFLLLAGRRGVYSGIIENMHLH 473
Query: 416 WKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTL 475
WKYRELVK++ K K + A +E ESGG+L+ + +SKG + YRGK+Y+RP L
Sbjct: 474 WKYRELVKVVYKGKDRMDIEDTAKMIECESGGILIGIYPVSKGQVFLYYRGKNYRRPEEL 533
Query: 476 RPKNLLTKRKALARSIELQRQE 497
RP NLLTKRKALAR E QR+E
Sbjct: 534 RPHNLLTKRKALARYTETQRRE 555
Score = 45.4 bits (106), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Query: 370 ERQADPESIT-----DEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI 424
+R+ P S+ D E R + + K + + + G+ V+ +H W+ E+VK+
Sbjct: 21 QRRVRPPSLAELVLPDAELRRLRTMIIHTKERIKVKKLGITRNVVQAIHQKWRTSEIVKL 80
Query: 425 IVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLR 476
+ +K+ LE +GG+++ G A+V+YRGKDY P R
Sbjct: 81 KCDQEVAMNMRKVHEELEKRTGGLVIW----RAGAALVIYRGKDYAGPPKER 128
>gi|162463484|ref|NP_001105008.1| chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic precursor [Zea mays]
gi|75173308|sp|Q9FYT6.1|CRS1_MAIZE RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|9837550|gb|AAG00595.1|AF290414_1 CRS1 [Zea mays]
Length = 715
Score = 357 bits (917), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 201/497 (40%), Positives = 299/497 (60%), Gaps = 51/497 (10%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
KTGGLV+W G +YRG Y Q K H ++
Sbjct: 237 KTGGLVVWTKGDMHFVYRGSKY-----------------------QQNAKHSHTFLT--- 270
Query: 66 NSLSAAADKTAQDPSNFDSYNNVH---ATQVNLETASEEQETDFVREVKYEDEVEKLLDG 122
NVH A Q N ++ +++ + V+ YE EV +LLD
Sbjct: 271 ---------------------NVHKDDAFQENDQSICGQKDEEPVKGTLYEREVNRLLDT 309
Query: 123 LGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPP 182
LGPR+ DW PLPVDAD+LP VPG + P+R+ P GVR TLA +E T L++LAR+LP
Sbjct: 310 LGPRFVDWWWDTPLPVDADLLPEFVPGSKTPYRLCPPGVRPTLADEELTYLRKLARLLPT 369
Query: 183 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNK 242
HFALGR+ +LQGLA A++KLWEKS IAKIA+K G+Q T +E+M ++K LTGGT++ RNK
Sbjct: 370 HFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQMAWNLKHLTGGTVILRNK 429
Query: 243 DFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGT 302
DF++ YRGK+FL V + + +RE Q +EE+ARL+A L + + + + GT
Sbjct: 430 DFIILYRGKDFLPGGVAQTVIQREAQVHDEQVKEEEARLKA-VDSLQMVGELSEESSLGT 488
Query: 303 LKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKV 362
+E ++++ ++ + EAE R ++ E KL+ +K+ R+ +AL+K+
Sbjct: 489 FREYQGFHAKFVHENTENSNTMIELEAEKYRLEKELKDHEWKLSVLNKKIERSNQALAKL 548
Query: 363 EESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELV 422
S P+E+ AD E +T+EE+ MFR++G +M +LLGRRG+FDG +E +H HWK++E+V
Sbjct: 549 HSSWSPSEQSADREHLTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVV 608
Query: 423 KIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLT 482
K+I K Q A LE E+GG+L++V+K++ +A+++YRGK+Y+RP+ NLLT
Sbjct: 609 KVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTSHAIILYRGKNYRRPAKSSFSNLLT 668
Query: 483 KRKALARSIELQRQEAL 499
KR+AL RSIE+QR+ ++
Sbjct: 669 KREALRRSIEVQRRGSM 685
>gi|242078893|ref|XP_002444215.1| hypothetical protein SORBIDRAFT_07g015120 [Sorghum bicolor]
gi|241940565|gb|EES13710.1| hypothetical protein SORBIDRAFT_07g015120 [Sorghum bicolor]
Length = 728
Score = 357 bits (917), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 204/496 (41%), Positives = 304/496 (61%), Gaps = 35/496 (7%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
KTGGLV+W G +Y+G Y Q N + S +HK +
Sbjct: 236 KTGGLVVWTKGDIHFVYKGSKY-----QQN-----------AKHSHTFVTNVHKGSLVKQ 279
Query: 66 NSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGP 125
N A D A Q N ++ +++ + V+ YE EV +LLD LGP
Sbjct: 280 NVRGEADD----------------AFQENDQSICGQKDEEPVKGTLYEREVNRLLDTLGP 323
Query: 126 RYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFA 185
R+ DW PLPVDAD+LP +PG++ PFR P GVR TLA +E T L++LAR LP HFA
Sbjct: 324 RFVDWWWDTPLPVDADLLPEFIPGFKTPFRQCPPGVRPTLADEELTYLRKLARPLPTHFA 383
Query: 186 LGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFL 245
LGR+ +LQGLA A++KLWEKS IAKIA+K G+Q T +E+M ++K LTGGT++ RNKDF+
Sbjct: 384 LGRNTRLQGLAAAILKLWEKSLIAKIAVKVGIQNTNNEQMAWNLKHLTGGTVILRNKDFV 443
Query: 246 VFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRA--SAFVLPSIETIEKSGTAGTL 303
+ YRGK+FL V + + +RE Q +EE+ARL+A S ++ + + E+S + GT
Sbjct: 444 ILYRGKDFLPGGVAQTVIQREAQVDDEQVKEEEARLKAVDSLQMVGELSSDEES-SVGTF 502
Query: 304 KETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVE 363
+E D ++ + + + EAE R ++ E KL+ +K+ R+ +AL+K+
Sbjct: 503 REYKDFHADFVHANTEKSNTMIELEAEKYRLEKELKDHEWKLSILNKKIERSNQALAKLR 562
Query: 364 ESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVK 423
S P+E+ AD E +T+EE+ MFR++G +M +LLGRRG+FDG +E +H HWK++E+VK
Sbjct: 563 SSWSPSEQSADRELLTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVK 622
Query: 424 IIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTK 483
+I K Q A LE E+GG+L++V+K++ +A+++YRGK+Y+RP+ NLLTK
Sbjct: 623 VITKQNQARQIMYTANLLEVETGGILIAVEKLTTSHAIILYRGKNYRRPAKSSFSNLLTK 682
Query: 484 RKALARSIELQRQEAL 499
R+AL RS+E+QR+ ++
Sbjct: 683 REALRRSLEVQRRGSM 698
>gi|356567264|ref|XP_003551841.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 712
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 187/402 (46%), Positives = 262/402 (65%)
Query: 94 NLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPP 153
++ T ++ V YE E E+LLDGLGPR+ DW PLPVDAD+LP VPG+QPP
Sbjct: 273 SISTGIQDVNCQLVNGSLYERETERLLDGLGPRFIDWWMHKPLPVDADLLPEEVPGFQPP 332
Query: 154 FRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIAL 213
FR+ P + L E T ++LA+ LP HF LGR++ L+GLA A++KLWEKS IAKIA+
Sbjct: 333 FRLCPPHSSAKLTDYELTYFRKLAQSLPTHFVLGRNKGLKGLASAILKLWEKSLIAKIAI 392
Query: 214 KRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQ 273
K G+ T +E M ++K LTGG LL RNK +++ YRG +FL V +++RE KS Q
Sbjct: 393 KYGIPNTDNEMMANELKCLTGGVLLLRNKFYILLYRGNDFLPRSVASLVEKRELELKSRQ 452
Query: 274 DEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRR 333
EE AR++A P E + T+GTL E ++ + N+ EAE+ R
Sbjct: 453 LHEEVARMKAIQAFSPIDEVPLDTSTSGTLTEFRKIQTKLEDTKSVNVDSNIQLEAEICR 512
Query: 334 HAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRM 393
+++ +++ +K+ R+ER LSK+ + P+E+ D E +TDEER FRK+GL+M
Sbjct: 513 LEKELKEEQRRAFILNKKIKRSERELSKLNAAWTPSEQDTDLEIMTDEERECFRKIGLKM 572
Query: 394 KAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVD 453
++ LLLGRRG+FDG +E +H HWK+RE+VK+I K F Q A LE ESGG+LVSVD
Sbjct: 573 QSSLLLGRRGIFDGVLEGLHQHWKHREVVKVITMQKLFSQVINTAKVLETESGGILVSVD 632
Query: 454 KISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQR 495
K+ +G+A+++YRGK+Y+RPS KNLLTKR+AL RS+E+QR
Sbjct: 633 KLKEGHAIIIYRGKNYKRPSIKLAKNLLTKREALRRSLEMQR 674
>gi|218201029|gb|EEC83456.1| hypothetical protein OsI_28955 [Oryza sativa Indica Group]
Length = 514
Score = 355 bits (912), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 194/501 (38%), Positives = 302/501 (60%), Gaps = 42/501 (8%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
KTGGLV+W G +YRG SY + + H+
Sbjct: 11 KTGGLVVWTRGGIHFVYRGSSY------------------------LENAKQHRDFVNYN 46
Query: 66 NSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGP 125
LS T+ +P++ Y + T N +++++ ++ YE EV +LLD LGP
Sbjct: 47 EELSPV---TSNNPTSQGKYWSKDETLTNDNDEADDKDDKPIKGTLYEREVNRLLDSLGP 103
Query: 126 RYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFA 185
R+ DW PLPVDAD+LP +VP ++ PFR P GVR TLA +E T L++ AR LP HF
Sbjct: 104 RFIDWWWNTPLPVDADLLPEVVPDFKTPFRQCPPGVRPTLADEELTYLRKHARPLPTHFV 163
Query: 186 LGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFL 245
LGR+ +LQGLA A++KLWEKS IAK+A+K G+Q + E+M ++K+LTGGT++ RNKD++
Sbjct: 164 LGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNSNHEQMARNLKRLTGGTVILRNKDYI 223
Query: 246 VFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKE 305
+ YRGK+FL V E++ E+E Q +EE+ARL+ + + + + GT +E
Sbjct: 224 IIYRGKDFLPGGVAESVIEQESQVHDQQAKEEEARLKMADSLQMIVGLSSERSYVGTFRE 283
Query: 306 TLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAE-------RKLLRAERA 358
D + +R ++ N + E ++H +LEK+L E +K+ R+ +
Sbjct: 284 YQDFHDSHARRTTEN---NFRIQLEAKKH-----RLEKELKDQEWRLSMLTKKIERSNQV 335
Query: 359 LSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKY 418
L+K+ S P+++ D E +T+EER +FRK+GL+M +LLGRRGVF+G +E +H HWK+
Sbjct: 336 LAKLHSSWSPSKKDGDRELLTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKH 395
Query: 419 RELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPK 478
+E+VK+I K +Q ++ LE E+GG L+++++ + +A+++YRGK+Y+RP+ P
Sbjct: 396 KEVVKVITKQNQANQITYTSMMLEVETGGTLIAIERFTTSHAIILYRGKNYRRPTKSAPS 455
Query: 479 NLLTKRKALARSIELQRQEAL 499
NLLTKR+AL RSIE+QR+ ++
Sbjct: 456 NLLTKREALQRSIEVQRRGSM 476
>gi|357454755|ref|XP_003597658.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355486706|gb|AES67909.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 880
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 204/509 (40%), Positives = 302/509 (59%), Gaps = 33/509 (6%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
KTGGLV+W A+ +YRG +Y++ S K +P+ + + +++ G
Sbjct: 299 KTGGLVVWSKKDALVVYRGCNYKLTSKGSTK--IDTGYIPSRKTNSYEMNGV--KLATIG 354
Query: 66 NSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGP 125
+ A +D++ S S+N H + +L T + YE E ++LLDGLGP
Sbjct: 355 DLYRAESDRST---SELPSWNADH--KHSLSTDIHDMNYQPANGSLYERECDRLLDGLGP 409
Query: 126 RYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFA 185
R+ DW PLPVDAD+LP +VPG++PP R+ P + L E T +R++ LP HF
Sbjct: 410 RFIDWWMHKPLPVDADLLPEVVPGFEPPLRICPPHASAKLTDGELTYFRRISHPLPTHFV 469
Query: 186 LGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFL 245
LGR+R LQGLA A++KLW KS IAKIA+K GVQ T +E M ++K+LTGG LL RNK ++
Sbjct: 470 LGRNRGLQGLAAAILKLWHKSHIAKIAIKYGVQNTDNETMANELKRLTGGVLLLRNKFYI 529
Query: 246 VFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRA-------SAFVLPSIETIEKSG 298
+ YRGK+FL V + ++ RE KS Q +EE AR++A F LP + +
Sbjct: 530 LLYRGKDFLPRRVADLVERRELELKSCQLDEEVARMKAIQAFSSIDEFPLP-----QGTS 584
Query: 299 TAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERA 358
T+GTL E + ++ + + + ++ EAE+ R +++ ++K +K+ R+
Sbjct: 585 TSGTLTEFRNIQNKLDEMKEVNVDLSIPLEAEIYRLEKELKEQQRKAFILNKKIERSTME 644
Query: 359 LSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLL------------GRRGVFD 406
LSK+ + KP+ D E +TDEER FRK+GL+M++ L+L GRRGVFD
Sbjct: 645 LSKLNAAWKPSGEDIDLEIMTDEERECFRKMGLKMRSCLVLGKAISLHSTTSAGRRGVFD 704
Query: 407 GTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRG 466
G +E +H HWK+RE+ K+I + + + LE ESGG+LVSVD++ +GYA+++YRG
Sbjct: 705 GVLEGLHQHWKHREVAKVITMQRLISRVIYTSQFLERESGGILVSVDQLKEGYAIIIYRG 764
Query: 467 KDYQRPSTLRPKNLLTKRKALARSIELQR 495
K+Y RPS KNLLTKRKAL RS+E+QR
Sbjct: 765 KNYSRPSEKIAKNLLTKRKALRRSLEMQR 793
>gi|115476078|ref|NP_001061635.1| Os08g0360100 [Oryza sativa Japonica Group]
gi|75132343|sp|Q6YYA3.1|CRS1_ORYSJ RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|38637564|dbj|BAD03815.1| putative CRS1 [Oryza sativa Japonica Group]
gi|113623604|dbj|BAF23549.1| Os08g0360100 [Oryza sativa Japonica Group]
Length = 725
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 197/501 (39%), Positives = 302/501 (60%), Gaps = 42/501 (8%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
KTGGLV+W G +YRG SY ++ KR H+
Sbjct: 222 KTGGLVVWTRGGIHFVYRGSSY----LENAKR--------------------HRDFVNYN 257
Query: 66 NSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGP 125
LS T+ +P++ Y + T N +++++ ++ YE EV +LLD LGP
Sbjct: 258 EELSPV---TSNNPTSQGKYWSKDETLTNDNDEADDKDDKPIKGTLYEREVNRLLDSLGP 314
Query: 126 RYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFA 185
R+ DW PLPVDAD+LP +VP ++ PFR P GVR LA +E T L++ AR LP HF
Sbjct: 315 RFIDWWWNTPLPVDADLLPEVVPDFKTPFRQCPPGVRPALADEELTYLRKHARPLPTHFV 374
Query: 186 LGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFL 245
LGR+ +LQGLA A++KLWEKS IAK+A+K G+Q T E+M ++K+LTGGT++ RNKD++
Sbjct: 375 LGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNTNHEQMARNLKRLTGGTVILRNKDYI 434
Query: 246 VFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKE 305
+ YRGK+FL V E++ ERE Q +EE+ARL+ + + + + GT +E
Sbjct: 435 IIYRGKDFLPGGVAESVIERESQVHDQQAKEEEARLKMADSLQMIVGLSSERSYVGTFRE 494
Query: 306 TLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAE-------RKLLRAERA 358
D + +R ++ N + E ++H +LEK+L E +K+ R+ +
Sbjct: 495 YQDFHDSHARRTTEN---NFRIQLEAKKH-----RLEKELKDQEWRLSMLTKKIERSNQV 546
Query: 359 LSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKY 418
L+K+ S P+++ D E +T+EER +FRK+GL+M +LLGRRGVF+G +E +H HWK+
Sbjct: 547 LAKLHSSWSPSKKDGDRELLTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKH 606
Query: 419 RELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPK 478
+E+VK+I K Q ++ LE E+GG L+++++ + +A+++YRGK+Y+RP+ P
Sbjct: 607 KEVVKVITKQNQASQITYTSMMLEVETGGTLIAIERFTTSHAIILYRGKNYRRPTKSAPS 666
Query: 479 NLLTKRKALARSIELQRQEAL 499
NLLTKR+AL RSIE+QR+ ++
Sbjct: 667 NLLTKREALQRSIEVQRRGSM 687
>gi|222640429|gb|EEE68561.1| hypothetical protein OsJ_27045 [Oryza sativa Japonica Group]
Length = 725
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 197/501 (39%), Positives = 302/501 (60%), Gaps = 42/501 (8%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
KTGGLV+W G +YRG SY ++ KR H+
Sbjct: 222 KTGGLVVWTRGGIHFVYRGSSY----LENAKR--------------------HRDFVNYN 257
Query: 66 NSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGP 125
LS T+ +P++ Y + T N +++++ ++ YE EV +LLD LGP
Sbjct: 258 EELSPV---TSNNPTSQGKYWSKDETLTNDNDEADDKDDKPIKGTLYEREVNRLLDSLGP 314
Query: 126 RYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFA 185
R+ DW PLPVDAD+LP +VP ++ PFR P GVR LA +E T L++ AR LP HF
Sbjct: 315 RFIDWWWNTPLPVDADLLPEVVPDFKTPFRQCPPGVRPALADEELTYLRKHARPLPTHFV 374
Query: 186 LGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFL 245
LGR+ +LQGLA A++KLWEKS IAK+A+K G+Q T E+M ++K+LTGGT++ RNKD++
Sbjct: 375 LGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNTNHEQMARNLKRLTGGTVILRNKDYI 434
Query: 246 VFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKE 305
+ YRGK+FL V E++ ERE Q +EE+ARL+ + + + + GT +E
Sbjct: 435 IIYRGKDFLPGGVAESVIERESQVHDQQAKEEEARLKMADSLQMIVGLSSERSYVGTFRE 494
Query: 306 TLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAE-------RKLLRAERA 358
D + +R ++ N + E ++H +LEK+L E +K+ R+ +
Sbjct: 495 YQDFHDSHARRTTEN---NFRIQLEAKKH-----RLEKELKDQEWRLSMLTKKIERSNQV 546
Query: 359 LSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKY 418
L+K+ S P+++ D E +T+EER +FRK+GL+M +LLGRRGVF+G +E +H HWK+
Sbjct: 547 LAKLHSSWSPSKKDGDRELLTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKH 606
Query: 419 RELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPK 478
+E+VK+I K Q ++ LE E+GG L+++++ + +A+++YRGK+Y+RP+ P
Sbjct: 607 KEVVKVITKQNQASQITYTSMMLEVETGGTLIAIERFTTSHAIILYRGKNYRRPTKSAPS 666
Query: 479 NLLTKRKALARSIELQRQEAL 499
NLLTKR+AL RSIE+QR+ ++
Sbjct: 667 NLLTKREALQRSIEVQRRGSM 687
>gi|255551422|ref|XP_002516757.1| conserved hypothetical protein [Ricinus communis]
gi|223544130|gb|EEF45655.1| conserved hypothetical protein [Ricinus communis]
Length = 742
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 208/503 (41%), Positives = 287/503 (57%), Gaps = 61/503 (12%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
KTGGLV+W ++ +YRG +Y L SS D++I S G
Sbjct: 264 KTGGLVVWTRKDSLVIYRGCNYH---------------LTKSSHVSTMDEKIG---SKDG 305
Query: 66 NSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGP 125
D +N + N +E E ++LLDGLGP
Sbjct: 306 EEEYIPTSIFIGDDANTPTINGSL----------------------FERETDRLLDGLGP 343
Query: 126 RYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFA 185
R+ DW PLPVDAD+LP +V G+ PP R + R+ L E T L++LA LP HF
Sbjct: 344 RFVDWWMRKPLPVDADLLPEVVAGFMPPSRF--HYARAKLKDDELTYLRKLAYALPTHFV 401
Query: 186 LGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFL 245
LGR+R+LQGLA A++KLWE+S IAKIA+K G+ T +E+M ++K LTGG LL RNK F+
Sbjct: 402 LGRNRRLQGLAAAILKLWERSLIAKIAVKWGIPNTDNEQMANELKHLTGGVLLLRNKFFI 461
Query: 246 VFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKE 305
+ +RGK+FL V + + +RE K Q EE ARL+A E + K+ GTL E
Sbjct: 462 ILFRGKDFLPCQVADLVVKRENELKICQLNEEGARLKAIETSFTDDELVVKATKIGTLNE 521
Query: 306 TLDANSRW---GKRLDDS------HKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAE 356
D R+ K DS KE L RE ++ H L+ K K+ ++
Sbjct: 522 FQDIQVRFKELAKGYRDSKLQLEAEKEKLERELRIQEHKLLILK---------SKIEKSA 572
Query: 357 RALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHW 416
R LSK+ + PA++ AD E +T+EER RK+GL+M++ LLLGRRGVFDG +E +H HW
Sbjct: 573 RELSKLNSAWAPADQDADLEMMTEEERECLRKIGLKMRSSLLLGRRGVFDGVIEGLHQHW 632
Query: 417 KYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLR 476
K+RE+VK+I + F Q + A LEAE+GG+LVS+DK+ +G+A+++YRGK+Y+RP L
Sbjct: 633 KHREVVKVISLQRMFAQVIRTAKFLEAETGGILVSIDKLKEGHAIIIYRGKNYRRPQRLL 692
Query: 477 PKNLLTKRKALARSIELQRQEAL 499
NLLTKRKAL RS+E+QR +L
Sbjct: 693 -NNLLTKRKALCRSLEMQRIGSL 714
>gi|125590660|gb|EAZ31010.1| hypothetical protein OsJ_15093 [Oryza sativa Japonica Group]
Length = 818
Score = 342 bits (877), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 218/564 (38%), Positives = 304/564 (53%), Gaps = 101/564 (17%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
RKTGGLVIWRSG+ + LYRG Y+ P + R K + +S + + D+ I S
Sbjct: 12 RKTGGLVIWRSGSTIILYRGTDYKYP--YFHDREMKNDMDESSEHTSSDDEDADLAIIAS 69
Query: 65 GNSLSAA-ADKTAQDPSNFDSYNN-------VHATQVNLETASEEQE------------- 103
S S +D A+ SN + V A + NL+ S EQ
Sbjct: 70 EQSGSEEDSDNPAEHGSNHTEEGDDLTRRFGVDALEGNLDIGSAEQSINSATKDQQAILH 129
Query: 104 --TDFVR----------------------------EVKYEDEVEKLLDGLGPRYTDWPGC 133
T+ R EVK +E +KLLDGLGPR++DW G
Sbjct: 130 TSTNVSRPSEISGRARSTLVAGVGSPNKFRLQLPGEVKLAEEADKLLDGLGPRFSDWWGY 189
Query: 134 DPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQ 193
DPLPVDAD+LP IVPGY+ RS LQ
Sbjct: 190 DPLPVDADLLPAIVPGYR------------------------------------RSSNLQ 213
Query: 194 GLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNF 253
GLA +MIKLWE+ +AK+A+KRG + S+ + E +K LTGGTLLSR+ + +VFYRGK+F
Sbjct: 214 GLAASMIKLWERCEVAKVAIKRGAENIDSDLISEKLKGLTGGTLLSRDNESIVFYRGKDF 273
Query: 254 LSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRW 313
L V+ A+++R + S + +++ P + K T +LD + +
Sbjct: 274 LPTAVSLAIEKRRKYGNSTISNPKLNFDKST----PQNSSKLKMAT----DVSLDGHECY 325
Query: 314 GKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQA 373
K+ D E V + Q +E +L++A + + E+ + ++E S +P+ R
Sbjct: 326 EKKHKD---ETAVSDNRAESLNVFAQNVEARLSQAIAEKEKTEKLIEELEMSSEPS-RAE 381
Query: 374 DPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQ 433
E I++EER+M RK+GL+MK+FLLLGRRGVFDGTVENMHLHWKYRELVKII K
Sbjct: 382 TREVISEEERYMLRKVGLKMKSFLLLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIKD 441
Query: 434 AKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIEL 493
+ A LEAESGG+LV+V+++SK +A+++YRGK+YQRPSTLRPK+LL K+ AL RS+E
Sbjct: 442 VEYAARTLEAESGGILVAVERVSKAHAIIIYRGKNYQRPSTLRPKSLLNKKDALKRSVEY 501
Query: 494 QRQEALLKHVATLESNAGRLRSEI 517
QR ++L HV L N L+ ++
Sbjct: 502 QRYKSLKLHVLNLSKNIDYLKDQM 525
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 65/129 (50%), Gaps = 12/129 (9%)
Query: 151 QPPFRVLPYGVRSTLA-RKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIA 209
Q P P R L RK+A +++ P A+GR+ + G+A A+ ++K +A
Sbjct: 679 QLPSAAAPLSNRERLMLRKQALKMKKR-----PVLAVGRNNVITGVAKAIKTHFKKHPLA 733
Query: 210 KIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRG------KNFLSPDVTEALQ 263
+ +K T ++++ ++++ TG L+SR + ++ YRG +N LS + +
Sbjct: 734 IVNIKNRADGTPIQQLISELEEATGSVLVSREPNKVILYRGWGADVAQNSLSGNNSTEQV 793
Query: 264 ERERLAKSL 272
E+E ++ L
Sbjct: 794 EKEVISPQL 802
>gi|218194999|gb|EEC77426.1| hypothetical protein OsI_16218 [Oryza sativa Indica Group]
Length = 818
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 218/564 (38%), Positives = 304/564 (53%), Gaps = 101/564 (17%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
RKTGGLVIWRSG+ + LYRG Y+ P + R K + +S + + D+ I S
Sbjct: 12 RKTGGLVIWRSGSTIILYRGTDYKYP--YFHDREMKNDMDESSEHTSSDDEDADLAIIAS 69
Query: 65 GNSLSAA-ADKTAQDPSNFDSYNN-------VHATQVNLETASEEQE------------- 103
S S +D A+ SN + V A + NL+ S EQ
Sbjct: 70 EQSGSEEDSDNPAEHGSNHTEEGDDLTRRFGVDALEGNLDIGSAEQSINSATKDQQAILH 129
Query: 104 --TDFVR----------------------------EVKYEDEVEKLLDGLGPRYTDWPGC 133
T+ R EVK +E +KLLDGLGPR++DW G
Sbjct: 130 TSTNVSRPSEISGRARSTLVAGVGSPNKFRLQLPGEVKLAEEADKLLDGLGPRFSDWWGY 189
Query: 134 DPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQ 193
DPLPVDAD+LP IVPGY+ RS LQ
Sbjct: 190 DPLPVDADLLPAIVPGYR------------------------------------RSSNLQ 213
Query: 194 GLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNF 253
GLA +MIKLWE+ +AK+A+KRG + S+ + E +K LTGGTLLSR+ + +VFYRGK+F
Sbjct: 214 GLAASMIKLWERCEVAKVAIKRGAENIDSDLISEKLKGLTGGTLLSRDNESIVFYRGKDF 273
Query: 254 LSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRW 313
L V+ A+++R + S + +++ P + K T +LD + +
Sbjct: 274 LPTAVSLAIEKRRKYGNSTISNPKLNFDKST----PQNSSKLKMAT----DVSLDGHECY 325
Query: 314 GKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQA 373
K+ D E V + Q +E +L++A + + E+ + ++E S +P+ R
Sbjct: 326 EKKHKD---ETAVSDNRAESLNVFTQNVEARLSQAIAEKEKTEKLIEELEMSSEPS-RAE 381
Query: 374 DPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQ 433
E I++EER+M RK+GL+MK+FLLLGRRGVFDGTVENMHLHWKYRELVKII K
Sbjct: 382 TREVISEEERYMLRKVGLKMKSFLLLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIKD 441
Query: 434 AKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIEL 493
+ A LEAESGG+LV+V+++SK +A+++YRGK+YQRPSTLRPK+LL K+ AL RS+E
Sbjct: 442 VEYAARTLEAESGGILVAVERVSKAHAIIIYRGKNYQRPSTLRPKSLLNKKDALKRSVEY 501
Query: 494 QRQEALLKHVATLESNAGRLRSEI 517
QR ++L HV L N L+ ++
Sbjct: 502 QRYKSLKLHVLNLSKNIDYLKDQM 525
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 65/129 (50%), Gaps = 12/129 (9%)
Query: 151 QPPFRVLPYGVRSTLA-RKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIA 209
Q P P R L RK+A +++ P A+GR+ + G+A A+ ++K +A
Sbjct: 679 QLPSAAAPLSNRERLMLRKQALKMKKR-----PVLAVGRNNVITGVAKAIKTHFKKHPLA 733
Query: 210 KIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRG------KNFLSPDVTEALQ 263
+ +K T ++++ ++++ TG L+SR + ++ YRG +N LS + +
Sbjct: 734 IVNIKNRADGTPIQQLISELEEATGSVLVSREPNKVILYRGWGADVAQNSLSGNNSTEQV 793
Query: 264 ERERLAKSL 272
E+E ++ L
Sbjct: 794 EKEVISPQL 802
>gi|21741981|emb|CAD41031.1| OSJNBa0060P14.12 [Oryza sativa Japonica Group]
gi|32492164|emb|CAE04823.1| OSJNBb0048E02.3 [Oryza sativa Japonica Group]
Length = 1012
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 218/564 (38%), Positives = 304/564 (53%), Gaps = 101/564 (17%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
RKTGGLVIWRSG+ + LYRG Y+ P + R K + +S + + D+ I S
Sbjct: 206 RKTGGLVIWRSGSTIILYRGTDYKYP--YFHDREMKNDMDESSEHTSSDDEDADLAIIAS 263
Query: 65 GNSLSAA-ADKTAQDPSNFDSYNN-------VHATQVNLETASEEQE------------- 103
S S +D A+ SN + V A + NL+ S EQ
Sbjct: 264 EQSGSEEDSDNPAEHGSNHTEEGDDLTRRFGVDALEGNLDIGSAEQSINSATKDQQAILH 323
Query: 104 --TDFVR----------------------------EVKYEDEVEKLLDGLGPRYTDWPGC 133
T+ R EVK +E +KLLDGLGPR++DW G
Sbjct: 324 TSTNVSRPSEISGRARSTLVAGVGSPNKFRLQLPGEVKLAEEADKLLDGLGPRFSDWWGY 383
Query: 134 DPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQ 193
DPLPVDAD+LP IVPGY+ RS LQ
Sbjct: 384 DPLPVDADLLPAIVPGYR------------------------------------RSSNLQ 407
Query: 194 GLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNF 253
GLA +MIKLWE+ +AK+A+KRG + S+ + E +K LTGGTLLSR+ + +VFYRGK+F
Sbjct: 408 GLAASMIKLWERCEVAKVAIKRGAENIDSDLISEKLKGLTGGTLLSRDNESIVFYRGKDF 467
Query: 254 LSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRW 313
L V+ A+++R + S + +++ P + K T +LD + +
Sbjct: 468 LPTAVSLAIEKRRKYGNSTISNPKLNFDKST----PQNSSKLKMAT----DVSLDGHECY 519
Query: 314 GKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQA 373
K+ D E V + Q +E +L++A + + E+ + ++E S +P+ R
Sbjct: 520 EKKHKD---ETAVSDNRAESLNVFAQNVEARLSQAIAEKEKTEKLIEELEMSSEPS-RAE 575
Query: 374 DPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQ 433
E I++EER+M RK+GL+MK+FLLLGRRGVFDGTVENMHLHWKYRELVKII K
Sbjct: 576 TREVISEEERYMLRKVGLKMKSFLLLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIKD 635
Query: 434 AKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIEL 493
+ A LEAESGG+LV+V+++SK +A+++YRGK+YQRPSTLRPK+LL K+ AL RS+E
Sbjct: 636 VEYAARTLEAESGGILVAVERVSKAHAIIIYRGKNYQRPSTLRPKSLLNKKDALKRSVEY 695
Query: 494 QRQEALLKHVATLESNAGRLRSEI 517
QR ++L HV L N L+ ++
Sbjct: 696 QRYKSLKLHVLNLSKNIDYLKDQM 719
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 390 GLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVL 449
G+R++ L +G+ GV +G V +H W+ ELVKI + K+ LE ++GG++
Sbjct: 153 GIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEILERKTGGLV 212
Query: 450 VSVDKISKGYAMVVYRGKDYQRP 472
+ G +++YRG DY+ P
Sbjct: 213 I----WRSGSTIILYRGTDYKYP 231
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 65/129 (50%), Gaps = 12/129 (9%)
Query: 151 QPPFRVLPYGVRSTLA-RKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIA 209
Q P P R L RK+A +++ P A+GR+ + G+A A+ ++K +A
Sbjct: 873 QLPSAAAPLSNRERLMLRKQALKMKKR-----PVLAVGRNNVITGVAKAIKTHFKKHPLA 927
Query: 210 KIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRG------KNFLSPDVTEALQ 263
+ +K T ++++ ++++ TG L+SR + ++ YRG +N LS + +
Sbjct: 928 IVNIKNRADGTPIQQLISELEEATGSVLVSREPNKVILYRGWGADVAQNSLSGNNSTEQV 987
Query: 264 ERERLAKSL 272
E+E ++ L
Sbjct: 988 EKEVISPQL 996
>gi|297602873|ref|NP_001053020.2| Os04g0464800 [Oryza sativa Japonica Group]
gi|255675534|dbj|BAF14934.2| Os04g0464800 [Oryza sativa Japonica Group]
Length = 1042
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 218/564 (38%), Positives = 304/564 (53%), Gaps = 101/564 (17%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
RKTGGLVIWRSG+ + LYRG Y+ P + R K + +S + + D+ I S
Sbjct: 206 RKTGGLVIWRSGSTIILYRGTDYKYP--YFHDREMKNDMDESSEHTSSDDEDADLAIIAS 263
Query: 65 GNSLSAA-ADKTAQDPSNFDSYNN-------VHATQVNLETASEEQE------------- 103
S S +D A+ SN + V A + NL+ S EQ
Sbjct: 264 EQSGSEEDSDNPAEHGSNHTEEGDDLTRRFGVDALEGNLDIGSAEQSINSATKDQQAILH 323
Query: 104 --TDFVR----------------------------EVKYEDEVEKLLDGLGPRYTDWPGC 133
T+ R EVK +E +KLLDGLGPR++DW G
Sbjct: 324 TSTNVSRPSEISGRARSTLVAGVGSPNKFRLQLPGEVKLAEEADKLLDGLGPRFSDWWGY 383
Query: 134 DPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQ 193
DPLPVDAD+LP IVPGY+ RS LQ
Sbjct: 384 DPLPVDADLLPAIVPGYR------------------------------------RSSNLQ 407
Query: 194 GLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNF 253
GLA +MIKLWE+ +AK+A+KRG + S+ + E +K LTGGTLLSR+ + +VFYRGK+F
Sbjct: 408 GLAASMIKLWERCEVAKVAIKRGAENIDSDLISEKLKGLTGGTLLSRDNESIVFYRGKDF 467
Query: 254 LSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRW 313
L V+ A+++R + S + +++ P + K T +LD + +
Sbjct: 468 LPTAVSLAIEKRRKYGNSTISNPKLNFDKST----PQNSSKLKMAT----DVSLDGHECY 519
Query: 314 GKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQA 373
K+ D E V + Q +E +L++A + + E+ + ++E S +P+ R
Sbjct: 520 EKKHKD---ETAVSDNRAESLNVFAQNVEARLSQAIAEKEKTEKLIEELEMSSEPS-RAE 575
Query: 374 DPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQ 433
E I++EER+M RK+GL+MK+FLLLGRRGVFDGTVENMHLHWKYRELVKII K
Sbjct: 576 TREVISEEERYMLRKVGLKMKSFLLLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIKD 635
Query: 434 AKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIEL 493
+ A LEAESGG+LV+V+++SK +A+++YRGK+YQRPSTLRPK+LL K+ AL RS+E
Sbjct: 636 VEYAARTLEAESGGILVAVERVSKAHAIIIYRGKNYQRPSTLRPKSLLNKKDALKRSVEY 695
Query: 494 QRQEALLKHVATLESNAGRLRSEI 517
QR ++L HV L N L+ ++
Sbjct: 696 QRYKSLKLHVLNLSKNIDYLKDQM 719
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 390 GLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVL 449
G+R++ L +G+ GV +G V +H W+ ELVKI + K+ LE ++GG++
Sbjct: 153 GIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEILERKTGGLV 212
Query: 450 VSVDKISKGYAMVVYRGKDYQRP 472
+ G +++YRG DY+ P
Sbjct: 213 I----WRSGSTIILYRGTDYKYP 231
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 65/129 (50%), Gaps = 12/129 (9%)
Query: 151 QPPFRVLPYGVRSTLA-RKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIA 209
Q P P R L RK+A +++ P A+GR+ + G+A A+ ++K +A
Sbjct: 873 QLPSAAAPLSNRERLMLRKQALKMKKR-----PVLAVGRNNVITGVAKAIKTHFKKHPLA 927
Query: 210 KIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRG------KNFLSPDVTEALQ 263
+ +K T ++++ ++++ TG L+SR + ++ YRG +N LS + +
Sbjct: 928 IVNIKNRADGTPIQQLISELEEATGSVLVSREPNKVILYRGWGADVAQNSLSGNNSTEQV 987
Query: 264 ERERLAKSL 272
E+E ++ L
Sbjct: 988 EKEVISPQL 996
>gi|224127512|ref|XP_002329296.1| predicted protein [Populus trichocarpa]
gi|222870750|gb|EEF07881.1| predicted protein [Populus trichocarpa]
Length = 687
Score = 323 bits (828), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 184/426 (43%), Positives = 262/426 (61%), Gaps = 31/426 (7%)
Query: 94 NLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPP 153
N T E T + +E E ++LLDGLGPR+ DW PLPVDAD+LP +V G++ P
Sbjct: 235 NTATIEENLNTQPINGSLFERETDRLLDGLGPRFVDWWMRKPLPVDADLLPEVVKGFRSP 294
Query: 154 FRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIAL 213
R+ P +RS L E T L++LA+ LP HF LGR+R+LQGLA A++KLWEK+ IAKIA+
Sbjct: 295 SRLCPPRMRSKLKDDELTYLRKLAQSLPTHFVLGRNRRLQGLAAAILKLWEKTIIAKIAV 354
Query: 214 KRGVQLTTSERMVEDIK------------KLTGGTLLSRNKDFLVFYRGKNFLSPDVTEA 261
K GV T +E+M +++K LTGG LL RNK F++ YRGK+FL V
Sbjct: 355 KWGVPNTNNEQMADELKAKIFLMLMLYTQSLTGGVLLLRNKFFIILYRGKDFLPGQVANV 414
Query: 262 LQERERLAKSLQDEEEQARLRA-SAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLD-- 318
+ +RE + Q EE AR++A +P T + GTL E + ++ K
Sbjct: 415 IVDREIALRKCQTNEEGARMKAIETSYMPGGPT--NTSRCGTLYEFQEFQIKFQKTAKGD 472
Query: 319 -----DSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQA 373
+++KE L E E+R Y ++ L+ K+ + + L SK+ + P+ R A
Sbjct: 473 SEIQLEAYKEKL--ERELRNQEYRLRILKSKIEKPAKDL-------SKLNSAWVPSPRDA 523
Query: 374 DPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQ 433
D +T+EER FRK+GL+++ L+LGRRGVF+G +E +H HWK+RE+VK+I + F Q
Sbjct: 524 DQGIMTEEERECFRKIGLKLRGSLVLGRRGVFEGVMEGLHQHWKHREVVKVITMQRVFSQ 583
Query: 434 AKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIEL 493
A LEAES G+LVSVDK+ +G+A+++YRGK+Y+RP L KNLLTKR+AL RS+ +
Sbjct: 584 VIHTATLLEAESDGILVSVDKLKEGHAIIIYRGKNYKRPLRLLKKNLLTKREALKRSLLI 643
Query: 494 QRQEAL 499
QR +L
Sbjct: 644 QRVGSL 649
>gi|302781424|ref|XP_002972486.1| hypothetical protein SELMODRAFT_412905 [Selaginella moellendorffii]
gi|300159953|gb|EFJ26572.1| hypothetical protein SELMODRAFT_412905 [Selaginella moellendorffii]
Length = 795
Score = 321 bits (822), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 201/500 (40%), Positives = 278/500 (55%), Gaps = 69/500 (13%)
Query: 109 EVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARK 168
E +Y DE++ LL+ LGPRY DW G P+PVD D+LP VPGY+PP R+LPY + L+
Sbjct: 337 EDEYLDEIDALLEELGPRYDDWIGRKPVPVDGDLLPASVPGYKPPLRMLPYRAKKNLSNM 396
Query: 169 EATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVED 228
E T L+RL + LPPHF LGR+R LQGLA A++KLW+KS + KI LKRGVQ T ++ M E+
Sbjct: 397 ELTVLRRLVKPLPPHFVLGRNRGLQGLASAILKLWQKSELVKIGLKRGVQNTRNQLMAEE 456
Query: 229 IKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVL 288
+++LTGG LLSR+K F+ YRGK+FL V L+ERE + L +E+Q R+ A
Sbjct: 457 LERLTGGVLLSRDKFFITLYRGKDFLPTSVAAVLRERESNMRELLLKEDQVRIPAQI--- 513
Query: 289 PSIETIEKSGTAGTLKETLDANSRW----GKRLDDSHKENLVREAEVRRHAYLVQKLEKK 344
+ +G+L E+++ +W ++ D+ + + V +VR ++LE K
Sbjct: 514 -GDGQNRTTPVSGSLSESMEMRRQWEAQRSEKDDEMDRNSAVVALKVREQ----KRLEAK 568
Query: 345 LARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGV 404
LA A K RA+ + K+E SL +E D E+IT+EER+MF+KLGLRM AFLL+GRRGV
Sbjct: 569 LAAAISKKRRADLQIVKLERSLLLSEHPRDRETITEEERYMFKKLGLRMDAFLLIGRRGV 628
Query: 405 FDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVY 464
FDG +ENMHLHWK+RELVK+I+K K A ++A LE ESGG+LV V
Sbjct: 629 FDGVIENMHLHWKHRELVKLILKEKDKAIALEVAKMLEIESGGILVGV------------ 676
Query: 465 RGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQM---N 521
AL H+ LE +LR + + + N
Sbjct: 677 ---------------------------------ALQLHIEKLEELIMKLRKDYDYLLKSN 703
Query: 522 SVKGTGDEQLYDKLDSAYATEDDDSEDEGDEAYLEMYAGGNDNEDEIDNSTHNLEMESDF 581
++ T LY +DS Y +D D E D L +D++DE+ S L+ E
Sbjct: 704 ALPDTPHSALYKAIDSKYQEDDIDGELLADRKKLH-----HDDDDEMAYSDDLLDSE--- 755
Query: 582 PYHAQDQESETELMDSESEA 601
+ ESE E EA
Sbjct: 756 -ISSDGSESEAERFRPPEEA 774
>gi|186523322|ref|NP_197122.2| ortholog of maize chloroplast splicing factor CRS1 [Arabidopsis
thaliana]
gi|374095377|sp|Q9LF10.2|CRS1_ARATH RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|332004875|gb|AED92258.1| ortholog of maize chloroplast splicing factor CRS1 [Arabidopsis
thaliana]
Length = 720
Score = 312 bits (800), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 174/391 (44%), Positives = 250/391 (63%), Gaps = 7/391 (1%)
Query: 112 YEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEAT 171
YE E ++LLDGLGPRY DW P PVDAD+LP +V GY P R P R+ L +E T
Sbjct: 308 YEREADRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRAKLTDEELT 367
Query: 172 NLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKK 231
L+ +A+ LP HF LGR+ LQGLA A++KLWEK IAKIA+K G T +E M ++++
Sbjct: 368 YLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMADELRY 427
Query: 232 LTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAF--VLP 289
LTGG L+ RNK +V YRGK+FLS +V + +++RERL Q EE R V+
Sbjct: 428 LTGGVLILRNKYLIVLYRGKDFLSDEVADLVEDRERLLSRYQHFEETKRESDIELLEVVT 487
Query: 290 SIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAE 349
+ + ++++ +GTL E + ++G + NL EAE R ++ E KL+ +
Sbjct: 488 NGKQLKETNKSGTLLEFQELQRKFG----EMDPRNLETEAEKARLEKELKSQEHKLSILK 543
Query: 350 RKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTV 409
K+ ++ L K+ KP+E D E +T+EER R++GL+M + L+LGRRGVF G +
Sbjct: 544 SKIEKSNMELFKLNSLWKPSEGDDDIEILTNEERECLRRIGLKMNSSLVLGRRGVFFGVM 603
Query: 410 ENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDY 469
E +H HWK+RE+ K+I K F + A ALE ES GVL+S++K+ +G+A+++YRGK+Y
Sbjct: 604 EGLHQHWKHREVAKVITMQKLFSRVVYTAKALETESNGVLISIEKLKEGHAILIYRGKNY 663
Query: 470 QRPST-LRPKNLLTKRKALARSIELQRQEAL 499
+RPS+ L +NLLTKRKAL RS+ +QR +L
Sbjct: 664 KRPSSKLMAQNLLTKRKALQRSVVMQRLGSL 694
>gi|9755828|emb|CAC01859.1| putative protein [Arabidopsis thaliana]
Length = 718
Score = 312 bits (800), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 174/391 (44%), Positives = 250/391 (63%), Gaps = 7/391 (1%)
Query: 112 YEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEAT 171
YE E ++LLDGLGPRY DW P PVDAD+LP +V GY P R P R+ L +E T
Sbjct: 306 YEREADRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRAKLTDEELT 365
Query: 172 NLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKK 231
L+ +A+ LP HF LGR+ LQGLA A++KLWEK IAKIA+K G T +E M ++++
Sbjct: 366 YLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMADELRY 425
Query: 232 LTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAF--VLP 289
LTGG L+ RNK +V YRGK+FLS +V + +++RERL Q EE R V+
Sbjct: 426 LTGGVLILRNKYLIVLYRGKDFLSDEVADLVEDRERLLSRYQHFEETKRESDIELLEVVT 485
Query: 290 SIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAE 349
+ + ++++ +GTL E + ++G + NL EAE R ++ E KL+ +
Sbjct: 486 NGKQLKETNKSGTLLEFQELQRKFG----EMDPRNLETEAEKARLEKELKSQEHKLSILK 541
Query: 350 RKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTV 409
K+ ++ L K+ KP+E D E +T+EER R++GL+M + L+LGRRGVF G +
Sbjct: 542 SKIEKSNMELFKLNSLWKPSEGDDDIEILTNEERECLRRIGLKMNSSLVLGRRGVFFGVM 601
Query: 410 ENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDY 469
E +H HWK+RE+ K+I K F + A ALE ES GVL+S++K+ +G+A+++YRGK+Y
Sbjct: 602 EGLHQHWKHREVAKVITMQKLFSRVVYTAKALETESNGVLISIEKLKEGHAILIYRGKNY 661
Query: 470 QRPST-LRPKNLLTKRKALARSIELQRQEAL 499
+RPS+ L +NLLTKRKAL RS+ +QR +L
Sbjct: 662 KRPSSKLMAQNLLTKRKALQRSVVMQRLGSL 692
>gi|297807647|ref|XP_002871707.1| ATCRS1/CRS1 [Arabidopsis lyrata subsp. lyrata]
gi|297317544|gb|EFH47966.1| ATCRS1/CRS1 [Arabidopsis lyrata subsp. lyrata]
Length = 727
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 176/426 (41%), Positives = 254/426 (59%), Gaps = 43/426 (10%)
Query: 112 YEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEAT 171
YE E ++LLDGLGPRY DW P PVDAD+LP +V GY+ P R P R+ L+ +E T
Sbjct: 281 YEREADRLLDGLGPRYLDWWMRRPFPVDADLLPQVVNGYRTPSRRCPPNTRAKLSDEELT 340
Query: 172 NLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKK 231
L+ +A+ LP HF LGR+ LQGLA A++KLWEK IAKIA+K G T +E M +++K
Sbjct: 341 YLRNIAQALPFHFVLGRNHGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMADELKH 400
Query: 232 LTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSI 291
LTGG L+ RNK ++ YRGK+FLS +VT+ + +RERL + Q EE R +L +
Sbjct: 401 LTGGVLILRNKYLIILYRGKDFLSDEVTDLVDDRERLLRGYQHFEETKR-EGDIEILEVV 459
Query: 292 ---ETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARA 348
+ ++++ +GTL E + ++G + NL EAE R ++ E KL+
Sbjct: 460 TDGKQLKETSKSGTLLEFQELQRKFG----EMETRNLETEAEKARLEKELKSQEHKLSIL 515
Query: 349 ERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL---------- 398
+ K+ ++ L K+ KP+ER D E T+EER R++GL+M + L+
Sbjct: 516 KSKIEKSTMELFKLNSLWKPSERDDDIEIFTNEERECLRRIGLKMSSSLVLGRSNRIHSC 575
Query: 399 ------------------------LGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQA 434
LGRRGVF G +E +H HWK+RE+ K+I K F +
Sbjct: 576 LLLIPYPLAMRLIYINFIFVFVSFLGRRGVFVGIMEGLHQHWKHREVAKVITMQKIFSRV 635
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPST-LRPKNLLTKRKALARSIEL 493
A +LEAES GVL+S++K+ +G+A+++YRGK+Y+RPS+ L +NLLTKRKAL RS+ +
Sbjct: 636 VYTAKSLEAESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQNLLTKRKALQRSVAM 695
Query: 494 QRQEAL 499
QR +L
Sbjct: 696 QRLGSL 701
>gi|168014862|ref|XP_001759970.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688720|gb|EDQ75095.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 512
Score = 301 bits (770), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 194/513 (37%), Positives = 281/513 (54%), Gaps = 73/513 (14%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
R TGG+VIWR G AV +YRG Y VP V + K + +A K++
Sbjct: 4 RLTGGIVIWREGPAVVIYRGKDY-VP-VWMRKMDLR---------EEAYRKRLQ------ 46
Query: 65 GNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLG 124
D +D S Q+ E S + +T+ ++E E+E L+D LG
Sbjct: 47 ------LLDCDEEDESR----------QLMEEGTSYDCQTNMIQE----SEIEDLMDDLG 86
Query: 125 PRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHF 184
P++ W PVD D+L + + PFR LPYGVR L E T ++ LA+ LPPHF
Sbjct: 87 PQFVGWIEGGRAPVDGDLL--VNSNFNSPFRRLPYGVRPRLTNFEMTEMRHLAKKLPPHF 144
Query: 185 ALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDF 244
LG+ R L+GLA A++KLWEKS +AKIA+KRGV ++RM ++ +LTGG L++RN +
Sbjct: 145 VLGQCRGLEGLASAIVKLWEKSEVAKIAMKRGVSRIVNDRMASELIRLTGGDLIARNMSY 204
Query: 245 LVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLK 304
+ YRG +FL V L+E++ +A++L ++EE+ RL A+ + + + ++
Sbjct: 205 IALYRGNSFLPAIVKGTLKEKDHIARTLLEDEERNRL-AAILARKAARDLARQ----RMQ 259
Query: 305 ETLDANSRWGKRLDDSHKENL------VREAEVRRHAYLVQKLEKK-------LARAERK 351
L++ S + H+ +L + ++ AY+V +E + L +K
Sbjct: 260 RILNSVSSFSYNFC-IHRSSLKFGLFLLSSIFMKISAYMVIDIEIRFKPIRIGLNVVSQK 318
Query: 352 LLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVEN 411
+ AER L + +KP + A E +T+EE + RK+GLRMK +LLLGRR VF G +EN
Sbjct: 319 ISSAERELLNLNLKMKPKDMHASKEDVTEEEMYTLRKIGLRMKPYLLLGRREVFSGVIEN 378
Query: 412 MHLHWKYRELVKIIVKVKTF-----DQAKKIALALEAESGGVLVSVDKISKGYAMVVYRG 466
MHLHWK+R+LVKIIVK F D + IA LE ESGGVLV + I G A++VYRG
Sbjct: 379 MHLHWKWRQLVKIIVKKSYFMYRERDDIENIARMLEIESGGVLVGICTIPVGEAIIVYRG 438
Query: 467 KDYQRPS----------TLRPKNLLTKRKALAR 489
K+YQRP+ LRP LLTK++A R
Sbjct: 439 KNYQRPNDGISPQGHPDGLRPCGLLTKKQAWER 471
>gi|326492864|dbj|BAJ90288.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 630
Score = 252 bits (644), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 163/409 (39%), Positives = 230/409 (56%), Gaps = 43/409 (10%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
K+GGLV+W G +YRG SY K I +P + + H+
Sbjct: 222 KSGGLVVWTKGDVHFVYRGSSYLENIKHRQKSIADIQRVPLEKCTAPGPQWKHE------ 275
Query: 66 NSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGP 125
S A T N D++ +L + E+ V YE EV +LLD LGP
Sbjct: 276 ---SNAEPSTNH---NDDAHGVFRGIDPSLAVHAYEEP---VEGTLYEREVNRLLDSLGP 326
Query: 126 RYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFA 185
R+ DW PLPVDAD+LP +VPG++ PFR P GVR TLA +E T L++LAR LP HFA
Sbjct: 327 RFVDWWWNTPLPVDADLLPEVVPGFKTPFRQCPPGVRPTLADEELTYLRKLARPLPTHFA 386
Query: 186 LGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFL 245
LGR+ +LQGLA A++KLWEKS IAKIA+K G+Q T +E+M ++K LTGGT++ RNKDF+
Sbjct: 387 LGRNTRLQGLAAAVLKLWEKSLIAKIAVKVGIQNTNNEQMAWNLKHLTGGTIILRNKDFV 446
Query: 246 VFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKE 305
+ YRGK+FL V +++ E+E + Q +EE+ARL V+ S++ AG E
Sbjct: 447 ILYRGKDFLPGGVKQSVIEQEARVYAQQVKEEEARL----MVMDSLKMF-----AGLPSE 497
Query: 306 TLDANSRWG------KRLDDSHKENL-VREAEVRRHAYLVQKLEKKLARAERKLL----- 353
S G + ++ + N+ + E E +H +LEK+L ER+L
Sbjct: 498 ESSVGSFRGYQDFQLNHVQETTENNMALIELEAEKH-----RLEKELKDQERRLFILTKK 552
Query: 354 --RAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLG 400
R+ AL+K+ S P+E+ AD E +T+EER +FRK+GL+M +LLG
Sbjct: 553 IERSNEALAKLHNSWNPSEQSADKELLTEEERMIFRKIGLKMDEHVLLG 601
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 84/177 (47%), Gaps = 12/177 (6%)
Query: 359 LSKVEESLKPAERQADP---ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLH 415
L +V K RQ P ++ DEE RKL + LGR G +
Sbjct: 344 LPEVVPGFKTPFRQCPPGVRPTLADEELTYLRKLARPLPTHFALGRNTRLQGLAAAVLKL 403
Query: 416 WKYRELVKIIVKVKTFD-QAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPST 474
W+ + KI VKV + +++A L+ +GG ++ +K +++YRGKD+ P
Sbjct: 404 WEKSLIAKIAVKVGIQNTNNEQMAWNLKHLTGGTIILRNK----DFVILYRGKDFL-PGG 458
Query: 475 LRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQL 531
+ K + +++A + +++ +EA L + +L+ AG L SE + S +G D QL
Sbjct: 459 V--KQSVIEQEARVYAQQVKEEEARLMVMDSLKMFAG-LPSEESSVGSFRGYQDFQL 512
>gi|147852955|emb|CAN81271.1| hypothetical protein VITISV_006146 [Vitis vinifera]
Length = 1399
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 126/274 (45%), Positives = 186/274 (67%), Gaps = 14/274 (5%)
Query: 225 MVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEE-EQARLRA 283
++E+++ LTGGTLLSR+++F+VFYRGK+FL P V+ A++ R + ++ + RL
Sbjct: 840 ILEEVRNLTGGTLLSRDREFIVFYRGKDFLPPAVSSAIEARRKYGIHRGKQKIDHHRLAI 899
Query: 284 SAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEK 343
+A + GT + D + DD +L + +R +V++
Sbjct: 900 NA----------EESELGTSEHASDKDC---DGTDDQKTNSLSKRRMLRSAEAVVERTSI 946
Query: 344 KLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRG 403
KL+ A K RAE+ L+++EE+ P + + D E IT+EER+M RK+GLRMK FLLLGRRG
Sbjct: 947 KLSMALEKKERAEKLLAELEEAQIPQQPEIDKEGITEEERYMLRKVGLRMKPFLLLGRRG 1006
Query: 404 VFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVV 463
+FDGTVENMHLHWKYRELVKII ++ + +A LEAESGG+LV+V+++SKGYA+++
Sbjct: 1007 IFDGTVENMHLHWKYRELVKIISNGRSIEDIHGVARTLEAESGGILVAVERVSKGYAIIM 1066
Query: 464 YRGKDYQRPSTLRPKNLLTKRKALARSIELQRQE 497
YRGK+Y+RP++LRP+ LL KR+A+ RS+E QR+E
Sbjct: 1067 YRGKNYKRPASLRPQTLLNKREAMKRSLEAQRRE 1100
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 114/243 (46%), Positives = 154/243 (63%), Gaps = 16/243 (6%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIH--KQIS 62
RKTGGLVIWRSG+ + LYRG +Y+ P + + + ASS SQ +++ H K++
Sbjct: 443 RKTGGLVIWRSGSYIILYRGANYKYPYFLSDNNLPNDSSHDASSDSQMNNEE-HDGKEVC 501
Query: 63 MSGNS-LSAAADKTAQDPSNFDSYNNV-HATQVNLETASEEQETDFVREVKYEDEVEKLL 120
SG + +A A + V + T+V + E Q E+E ++LL
Sbjct: 502 SSGKGDVKSAGPMPANKIAPLSLIQGVGYPTRVRFQLPGEAQ---------LEEEADRLL 552
Query: 121 DGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVL 180
DGLGPR+TDW G DPLP+DAD+LP +VPGY+ PFR+LPYG++ L E T L+RL R L
Sbjct: 553 DGLGPRFTDWWGYDPLPIDADLLPAVVPGYRRPFRLLPYGLKPKLTNDEMTVLRRLGRPL 612
Query: 181 PPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSR 240
P HFALGR+R+LQGLA +MIKLWEK IAKIA+KRGVQ T SE M E++K +G ++
Sbjct: 613 PCHFALGRNRKLQGLAASMIKLWEKCEIAKIAVKRGVQNTNSEMMAEELK--SGSSIFGN 670
Query: 241 NKD 243
K+
Sbjct: 671 CKN 673
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 68/131 (51%), Gaps = 7/131 (5%)
Query: 350 RKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTV 409
RK ++ E+ L + E+ P + ++ +EE + +G++++ L +G+ G+ +G V
Sbjct: 353 RKEVKREKKLVRKEDERAPTLAEL---TLPEEELRRLKGIGIQIRKKLKVGKAGITEGIV 409
Query: 410 ENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDY 469
+H W+ E+VKI + K+ LE ++GG+++ G +++YRG +Y
Sbjct: 410 NGIHERWRRAEVVKIRCEDICKLNMKRTHDILERKTGGLVI----WRSGSYIILYRGANY 465
Query: 470 QRPSTLRPKNL 480
+ P L NL
Sbjct: 466 KYPYFLSDNNL 476
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 125/301 (41%), Gaps = 64/301 (21%)
Query: 7 TGGLVI----WRSGTAVSLYRGVSYEVP-----------------SVQLNKRIYKRNELP 45
+GG+++ G A+ +YRG +Y+ P S++ +R + RN+
Sbjct: 1048 SGGILVAVERVSKGYAIIMYRGKNYKRPASLRPQTLLNKREAMKRSLEAQRREFSRNKDK 1107
Query: 46 ASSVSQATDKQ---------------IHKQISM--SGNSL-SAAADKTAQDPSNFDSYNN 87
++ Q DK IH M S +SL ++ DK PS DS +
Sbjct: 1108 ETNSKQLVDKSRLHLARERYGADVILIHSSDGMDSSRDSLQTSHNDKRIDFPSMCDSDTD 1167
Query: 88 VHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIV 147
+ + E+ +E ET+ + ++ E+E D L + C + + + V
Sbjct: 1168 EANPEPSSESVLKEIETNVLTDMNEEEECATCSDDLVSQGQT--SCYAIVNHEETMESSV 1225
Query: 148 ---------PGYQP--------PFRVLPYGVRS-TLARKEATNLQRLARVLPPHFALGRS 189
P +P PFR P R L RK+A +++ P A+GRS
Sbjct: 1226 KSSKNEFKPPVQRPVDTRSNEMPFRAAPLSNRERLLLRKQALRMKKR-----PVIAVGRS 1280
Query: 190 RQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYR 249
+ G+A + ++K +A + +K + T+ + +V +++ TG L+S+ ++ YR
Sbjct: 1281 NIVTGVAKTIKAHFQKHPLAIVNVKGRAKGTSVQEVVFKLEQATGAVLVSQEPSKVILYR 1340
Query: 250 G 250
G
Sbjct: 1341 G 1341
>gi|154986385|gb|ABS89146.1| CFM2 alternative polyadenylation form 1 [Zea mays]
Length = 668
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 130/295 (44%), Positives = 188/295 (63%), Gaps = 24/295 (8%)
Query: 109 EVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARK 168
EVK +E +KLLDGLGPR++ W G DP+PVDAD+LP IVPGY+ PFR+LP GV L +
Sbjct: 364 EVKLAEEADKLLDGLGPRFSGWWGYDPVPVDADLLPAIVPGYRRPFRLLPSGVPPKLTDR 423
Query: 169 EATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVED 228
E T L+RLA LP H+ALGRS LQGLA +MIKLWE+ +AKIALKR T SE + E+
Sbjct: 424 EMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTDSELITEE 483
Query: 229 IKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVL 288
+K+LTGGTLLSR+K+ +VFYRGK+FL P V+ A+++R +L S + +
Sbjct: 484 VKELTGGTLLSRDKESIVFYRGKDFLPPAVSLAIEKRRKLGSSTIYKAK----------- 532
Query: 289 PSIETIEKSGTAGTLKETLDANSRW---GKRLDDSHKENLVREAEVRRHAYLVQKLEKKL 345
P IE + LK + D + G + ++ E+L + + +E +L
Sbjct: 533 PGIEESMPTQNDSVLKVSSDVSVHVREEGTSVTENRAESL---------NTVAKDVETRL 583
Query: 346 ARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLG 400
++A + +AE+ + ++E++ P + E+I+++ER+M RK+GL+MK FLLLG
Sbjct: 584 SQAIAEKAKAEKLIEELEKA-SPLSKAEVRETISEDERYMLRKVGLKMKQFLLLG 637
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRI 38
RKTGGLVIWRSG+ + LYRG +Y P ++R+
Sbjct: 195 RKTGGLVIWRSGSTIILYRGTNYTYPYFHHSERV 228
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 93/196 (47%), Gaps = 21/196 (10%)
Query: 386 FRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAES 445
+ +G+R++ L +G+ G+ +G V +H W+ E+VK+ + ++ LE ++
Sbjct: 138 LQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKT 197
Query: 446 GGVLVSVDKISKGYAMVVYRGKDYQRP---STLRPKNLLTKRKALARSIELQRQEALLKH 502
GG+++ G +++YRG +Y P + R + L K + +S E +H
Sbjct: 198 GGLVI----WRSGSTIILYRGTNYTYPYFHHSERVDSFLDKESS-DQSNSGDEDETSSQH 252
Query: 503 VATLE-SNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATEDDDSED---------EGDE 552
++ E S+ + + EQ++ G G+ Q + L+ + + E D + + DE
Sbjct: 253 GSSHEKSSENPVVACAEQIHV--GEGNSQTIEYLNQSLSREKDTNHPVSSIKRLVFDADE 310
Query: 553 AYLEMYAGGNDNEDEI 568
L++ A GN NE +
Sbjct: 311 GNLDIRA-GNPNEQHV 325
Score = 45.4 bits (106), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 375 PESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFD-Q 433
P +TD E + R+L + LGR G +M W+ E+ KI +K +
Sbjct: 417 PPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTD 476
Query: 434 AKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPST 474
++ I ++ +GG L+S DK S +V YRGKD+ P+
Sbjct: 477 SELITEEVKELTGGTLLSRDKES----IVFYRGKDFLPPAV 513
>gi|413918578|gb|AFW58510.1| CFM2 alternative polyadenylation form 1 [Zea mays]
Length = 681
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 130/295 (44%), Positives = 188/295 (63%), Gaps = 24/295 (8%)
Query: 109 EVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARK 168
EVK +E +KLLDGLGPR++ W G DP+PVDAD+LP IVPGY+ PFR+LP GV L +
Sbjct: 377 EVKLAEEADKLLDGLGPRFSGWWGYDPVPVDADLLPAIVPGYRRPFRLLPSGVPPKLTDR 436
Query: 169 EATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVED 228
E T L+RLA LP H+ALGRS LQGLA +MIKLWE+ +AKIALKR T SE + E+
Sbjct: 437 EMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTDSELITEE 496
Query: 229 IKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVL 288
+K+LTGGTLLSR+K+ +VFYRGK+FL P V+ A+++R +L S + +
Sbjct: 497 VKELTGGTLLSRDKESIVFYRGKDFLPPAVSLAIEKRRKLGSSTIYKAK----------- 545
Query: 289 PSIETIEKSGTAGTLKETLDANSRW---GKRLDDSHKENLVREAEVRRHAYLVQKLEKKL 345
P IE + LK + D + G + ++ E+L + + +E +L
Sbjct: 546 PGIEESMPTQNDSVLKVSSDVSVHVREEGTSVTENRAESL---------NTVAKDVETRL 596
Query: 346 ARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLG 400
++A + +AE+ + ++E++ P + E+I+++ER+M RK+GL+MK FLLLG
Sbjct: 597 SQAIAEKAKAEKLIEELEKA-SPLSKAEVRETISEDERYMLRKVGLKMKQFLLLG 650
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRI 38
RKTGGLVIWRSG+ + LYRG +Y P ++R+
Sbjct: 208 RKTGGLVIWRSGSTIILYRGTNYTYPYFHHSERV 241
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 93/196 (47%), Gaps = 21/196 (10%)
Query: 386 FRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAES 445
+ +G+R++ L +G+ G+ +G V +H W+ E+VK+ + ++ LE ++
Sbjct: 151 LQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKT 210
Query: 446 GGVLVSVDKISKGYAMVVYRGKDYQRP---STLRPKNLLTKRKALARSIELQRQEALLKH 502
GG+++ G +++YRG +Y P + R + L K + +S E +H
Sbjct: 211 GGLVI----WRSGSTIILYRGTNYTYPYFHHSERVDSFLDKESS-DQSNSGDEDETSSQH 265
Query: 503 VATLE-SNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATEDDDSED---------EGDE 552
++ E S+ + + EQ++ G G+ Q + L+ + + E D + + DE
Sbjct: 266 GSSHEKSSENPVVACAEQIHV--GEGNSQTIEYLNQSLSREKDTNHPVSSIKRLVFDADE 323
Query: 553 AYLEMYAGGNDNEDEI 568
L++ A GN NE +
Sbjct: 324 GNLDIRA-GNPNEQHV 338
Score = 45.4 bits (106), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 375 PESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFD-Q 433
P +TD E + R+L + LGR G +M W+ E+ KI +K +
Sbjct: 430 PPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTD 489
Query: 434 AKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPST 474
++ I ++ +GG L+S DK S +V YRGKD+ P+
Sbjct: 490 SELITEEVKELTGGTLLSRDKES----IVFYRGKDFLPPAV 526
>gi|357516865|ref|XP_003628721.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355522743|gb|AET03197.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 387
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 131/357 (36%), Positives = 202/357 (56%), Gaps = 39/357 (10%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
KTGG+V+WR G+++ LYRG+SY++P V+ ++Y NE ++V + D + SG
Sbjct: 56 KTGGIVVWRLGSSIVLYRGMSYKLPCVESYTKVYNANE---NAVDNSVDVR-------SG 105
Query: 66 NSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGP 125
+S+ + K P+ +S+N ++A ++ E ++ LLD LGP
Sbjct: 106 SSVEVSV-KVMVGPA--ESFNR--------DSAEYLKDMSEEEESMESIKLNLLLDELGP 154
Query: 126 RYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFA 185
R+ DW G +PL VDAD LP +VPGY+ PFR+LPYGV+ L+ KE T ++R+AR HFA
Sbjct: 155 RFKDWTGREPLTVDADQLPVVVPGYKTPFRLLPYGVKPCLSNKEMTVMRRIARRTALHFA 214
Query: 186 LGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKK-LTGGTLLSRNK-- 242
L GLA A++KLWE S++AKIA++ GV T+++RM E++K L L+ + K
Sbjct: 215 L-------GLARAIVKLWETSAVAKIAIRHGVPYTSNDRMAEELKVFLINFCLMHQLKHE 267
Query: 243 --DFLVFYRGKNFLSP------DVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETI 294
L+ + G +F VT+ L ER++L QDEEE+AR AS+ L + ++
Sbjct: 268 HIHSLIIFMGVSFYGAMTYCLLSVTKTLTERQKLTVLQQDEEEKARQNASSITLSNSKSS 327
Query: 295 EKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERK 351
+ AGTL ET A + WG + ++RE+ + R + L++ E KLA K
Sbjct: 328 QMQLLAGTLAETRAATANWGHQPSKQEVGKMIRESTLDRLSSLIRNHESKLALVSYK 384
>gi|326521980|dbj|BAK04118.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 232
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/219 (45%), Positives = 144/219 (65%), Gaps = 8/219 (3%)
Query: 333 RHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLR 392
R QK + K+ RA + LSK+E S+ A D E IT EER +FR++GL+
Sbjct: 2 RKGKTFQKTRTQAFHCSSKIHRAGKLLSKIEASMVLANPSDDREMITAEERSVFRRIGLK 61
Query: 393 MKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSV 452
MKA+L +G RGVFDG +ENMHLHWK+RE+VK+I K KT ++ A LE ESGG+LV++
Sbjct: 62 MKAYLPVGIRGVFDGVIENMHLHWKHREVVKLITKQKTLAFVEETARLLEYESGGILVAI 121
Query: 453 DKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGR 512
+++ KG+A++ YRGK+Y+RP +RP+NLLTK KAL R++ +QR EAL +H+ LE N +
Sbjct: 122 ERVPKGHALIFYRGKNYRRPINIRPRNLLTKAKALKRAVAMQRHEALSQHIDQLEINMKQ 181
Query: 513 LRSEIEQMNSVKGTGDEQLYDKLDSAYATEDDDSE-DEG 550
++ ++ + DE+ D DS +EDD + DEG
Sbjct: 182 MKRDLGMEDY-----DEEGGDGSDS--ESEDDTAGYDEG 213
>gi|167998334|ref|XP_001751873.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696971|gb|EDQ83308.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 590
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/179 (52%), Positives = 129/179 (72%), Gaps = 6/179 (3%)
Query: 341 LEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLG 400
LE++L+ RK E+ L+K++ +K A+ E I+DEER+MF KLGLRM+A LL+G
Sbjct: 110 LEERLSLVARKKKYVEKELAKLDGQMKLADAPPAKEQISDEERYMFMKLGLRMRARLLMG 169
Query: 401 -----RRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKI 455
RRGVFDG VENMHLHWK+RELVK+I K F+ A++ A LE ESGGVLV +
Sbjct: 170 KLSSGRRGVFDGVVENMHLHWKHRELVKVIFKGPIFE-AEQTAKILEMESGGVLVGIVTT 228
Query: 456 SKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLR 514
+KG A++ YRGK+YQRPS LRP++LL+KR+A RS+E+QR+ +L +H+ LE G+L+
Sbjct: 229 TKGQAIIFYRGKNYQRPSELRPRHLLSKRQAYERSLEMQRKRSLEQHMLKLEKEIGKLQ 287
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 107/248 (43%), Gaps = 24/248 (9%)
Query: 9 GLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHK---QISMSG 65
G+V G A+ YRG +Y+ PS + + + + S+ + + + ++
Sbjct: 224 GIVTTTKGQAIIFYRGKNYQRPSELRPRHLLSKRQAYERSLEMQRKRSLEQHMLKLEKEI 283
Query: 66 NSLSAAADKTAQDPSNFD-SYNNVHATQVNLETASEE-QETDFVREVKYEDEVEKLLDGL 123
L +T + S + N+ A L T E+ + +F + Y + + ++
Sbjct: 284 GKLQVGLYETGEGNSGLEMEEKNLLALSEPLGTVLEDFDDEEFRSDENYNENLADDIERF 343
Query: 124 GPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTL-ARKEATNLQRLARVLPP 182
G W P P G+V P F+ P ++ + R+EA L + P
Sbjct: 344 G-----WKREKPNP------RGVV--LDPIFKAQPLTIKERIRLRQEA-----LKQSDPM 385
Query: 183 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNK 242
H +G+S + GLA A+ ++K A + +K + T E +++ +++ TG L+SR
Sbjct: 386 HINIGKSNMVAGLAKAIRLYFQKQPFAIVGVKGRAKDTPVEEIIQQLEEATGAVLVSREP 445
Query: 243 DFLVFYRG 250
+ L+ YRG
Sbjct: 446 NKLILYRG 453
>gi|297612106|ref|NP_001068192.2| Os11g0592400 [Oryza sativa Japonica Group]
gi|255680227|dbj|BAF28555.2| Os11g0592400, partial [Oryza sativa Japonica Group]
Length = 108
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/103 (79%), Positives = 94/103 (91%)
Query: 398 LLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISK 457
L GRRGVFDGT+ENMHLHWKYRELVKI+VK K+F KKIAL+LEAESGG+LVSVDK+SK
Sbjct: 6 LSGRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKVSK 65
Query: 458 GYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALL 500
GYA+VV+RGKDY RPS LRP+NLL+KRKALARSIE+QR+E L
Sbjct: 66 GYAIVVFRGKDYARPSKLRPRNLLSKRKALARSIEIQRREVLF 108
>gi|413946392|gb|AFW79041.1| hypothetical protein ZEAMMB73_840751 [Zea mays]
Length = 197
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/195 (48%), Positives = 134/195 (68%), Gaps = 16/195 (8%)
Query: 378 ITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKI 437
ITDEE+ +FR++GLR+KA+L LG RGVFDG +ENMHLHWK+RE+VK+I K KT ++
Sbjct: 2 ITDEEKSVFRRIGLRLKAYLPLGVRGVFDGVIENMHLHWKHREVVKLISKQKTLSFVEET 61
Query: 438 ALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQE 497
A L ESGG+LV+++++ KGYA++ YRGK+Y+RP +RP+NLLTK KAL R++ +QR E
Sbjct: 62 ARLLAYESGGILVAIERVPKGYALIFYRGKNYRRPINIRPRNLLTKAKALKRAVAMQRHE 121
Query: 498 ALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATEDDDSEDEGDEAYLEM 557
AL +H+ LESN I+QM G D + D+ DS+ DSE+E D A +
Sbjct: 122 ALSQHIDQLESN-------IKQMKLDLGIEDYEEQDE-DSS------DSENEYDNAVTSV 167
Query: 558 YAGGNDNEDEIDNST 572
++++D+ D S
Sbjct: 168 --SYDEDQDDFDESA 180
>gi|413946391|gb|AFW79040.1| hypothetical protein ZEAMMB73_840751 [Zea mays]
Length = 266
Score = 171 bits (434), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 77/140 (55%), Positives = 111/140 (79%)
Query: 378 ITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKI 437
ITDEE+ +FR++GLR+KA+L LG RGVFDG +ENMHLHWK+RE+VK+I K KT ++
Sbjct: 2 ITDEEKSVFRRIGLRLKAYLPLGVRGVFDGVIENMHLHWKHREVVKLISKQKTLSFVEET 61
Query: 438 ALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQE 497
A L ESGG+LV+++++ KGYA++ YRGK+Y+RP +RP+NLLTK KAL R++ +QR E
Sbjct: 62 ARLLAYESGGILVAIERVPKGYALIFYRGKNYRRPINIRPRNLLTKAKALKRAVAMQRHE 121
Query: 498 ALLKHVATLESNAGRLRSEI 517
AL +H+ LESN +++ ++
Sbjct: 122 ALSQHIDQLESNIKQMKLDL 141
>gi|414870651|tpg|DAA49208.1| TPA: chloroplast RNA splicing1 [Zea mays]
Length = 496
Score = 168 bits (425), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 96/226 (42%), Positives = 133/226 (58%), Gaps = 17/226 (7%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
KTGGLV+W G +YRG Y Q N + S +HK +
Sbjct: 237 KTGGLVVWTKGDMHFVYRGSKY-----QQNAKH-----------SHTFLTNVHKGYLVKH 280
Query: 66 NSLSAAADKTAQDPSNFDSYNNVH-ATQVNLETASEEQETDFVREVKYEDEVEKLLDGLG 124
N + + P ++Y A Q N ++ +++ + V+ YE EV +LLD LG
Sbjct: 281 NVHTTLLKYGSIGPVLINNYGEADDAFQENDQSICGQKDEEPVKGTLYEREVNRLLDTLG 340
Query: 125 PRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHF 184
PR+ DW PLPVDAD+LP VPG++ P+R+ P GVR TLA +E T L++LAR+LP HF
Sbjct: 341 PRFVDWWWDTPLPVDADLLPEFVPGFKTPYRLCPPGVRPTLADEELTYLRKLARLLPTHF 400
Query: 185 ALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIK 230
ALGR+ +LQGLA A++KLWEKS IAKIA+K G+Q T +E+M ++K
Sbjct: 401 ALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQMAWNLK 446
>gi|9837552|gb|AAG00596.1|AF290415_1 CRS1 [Zea mays]
Length = 267
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 126/228 (55%), Gaps = 50/228 (21%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
KTGGLV+W G +YRG Y Q K H ++
Sbjct: 37 KTGGLVVWTKGDMHFVYRGSKY-----------------------QQNAKHSHTFLT--- 70
Query: 66 NSLSAAADKTAQDPSNFDSYNNVH---ATQVNLETASEEQETDFVREVKYEDEVEKLLDG 122
NVH A Q N ++ +++ + V+ YE EV +LLD
Sbjct: 71 ---------------------NVHKDDAFQENDQSICGQKDEEPVKGTLYEREVNRLLDT 109
Query: 123 LGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPP 182
LGPR+ DW PLPVDAD+LP VPG++ P+R+ P GVR TLA +E T L++LAR+LP
Sbjct: 110 LGPRFVDWWWDTPLPVDADLLPEFVPGFKTPYRLCPPGVRPTLADEELTYLRKLARLLPT 169
Query: 183 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIK 230
HFALGR+ +LQGLA A++KLWEKS IAKIA+K G+Q T +E+M ++K
Sbjct: 170 HFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQMAWNLK 217
>gi|414870653|tpg|DAA49210.1| TPA: chloroplast RNA splicing1 [Zea mays]
Length = 467
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 126/228 (55%), Gaps = 50/228 (21%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
KTGGLV+W G +YRG Y Q K H ++
Sbjct: 237 KTGGLVVWTKGDMHFVYRGSKY-----------------------QQNAKHSHTFLT--- 270
Query: 66 NSLSAAADKTAQDPSNFDSYNNVH---ATQVNLETASEEQETDFVREVKYEDEVEKLLDG 122
NVH A Q N ++ +++ + V+ YE EV +LLD
Sbjct: 271 ---------------------NVHKDDAFQENDQSICGQKDEEPVKGTLYEREVNRLLDT 309
Query: 123 LGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPP 182
LGPR+ DW PLPVDAD+LP VPG++ P+R+ P GVR TLA +E T L++LAR+LP
Sbjct: 310 LGPRFVDWWWDTPLPVDADLLPEFVPGFKTPYRLCPPGVRPTLADEELTYLRKLARLLPT 369
Query: 183 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIK 230
HFALGR+ +LQGLA A++KLWEKS IAKIA+K G+Q T +E+M ++K
Sbjct: 370 HFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQMAWNLK 417
>gi|413946390|gb|AFW79039.1| hypothetical protein ZEAMMB73_840751 [Zea mays]
Length = 132
Score = 158 bits (399), Expect = 9e-36, Method: Composition-based stats.
Identities = 71/123 (57%), Positives = 98/123 (79%)
Query: 378 ITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKI 437
ITDEE+ +FR++GLR+KA+L LG RGVFDG +ENMHLHWK+RE+VK+I K KT ++
Sbjct: 2 ITDEEKSVFRRIGLRLKAYLPLGVRGVFDGVIENMHLHWKHREVVKLISKQKTLSFVEET 61
Query: 438 ALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQE 497
A L ESGG+LV+++++ KGYA++ YRGK+Y+RP +RP+NLLTK KAL R++ +QR E
Sbjct: 62 ARLLAYESGGILVAIERVPKGYALIFYRGKNYRRPINIRPRNLLTKAKALKRAVAMQRHE 121
Query: 498 ALL 500
L
Sbjct: 122 VCL 124
>gi|125547308|gb|EAY93130.1| hypothetical protein OsI_14936 [Oryza sativa Indica Group]
Length = 103
Score = 134 bits (338), Expect = 1e-28, Method: Composition-based stats.
Identities = 58/81 (71%), Positives = 69/81 (85%)
Query: 107 VREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLA 166
V E+KYEDE++KL D LGPRY DWP DP P+DAD+LP VPGY+PPFRVLPYGVR +L+
Sbjct: 16 VPEIKYEDEIDKLSDELGPRYDDWPRPDPSPIDADLLPATVPGYKPPFRVLPYGVRPSLS 75
Query: 167 RKEATNLQRLARVLPPHFALG 187
R++ TNL+RLAR LPPHFALG
Sbjct: 76 RRDTTNLRRLARGLPPHFALG 96
>gi|147838476|emb|CAN69859.1| hypothetical protein VITISV_037991 [Vitis vinifera]
Length = 371
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/101 (58%), Positives = 80/101 (79%)
Query: 399 LGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKG 458
GRRGVFDG +E +H HWK+RE+VK+I ++F Q A LE+ESGGVLVS+DK+ +G
Sbjct: 118 FGRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQVLYTAKLLESESGGVLVSIDKLKEG 177
Query: 459 YAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEAL 499
+A+++YRGK+Y+RP L PKNLLTKR+AL RS+E+QR +L
Sbjct: 178 HAIIIYRGKNYRRPIKLVPKNLLTKREALNRSLEMQRIGSL 218
>gi|115459160|ref|NP_001053180.1| Os04g0492900 [Oryza sativa Japonica Group]
gi|21740788|emb|CAD41533.1| OSJNBb0091E11.2 [Oryza sativa Japonica Group]
gi|38346227|emb|CAE02049.2| OJ990528_30.7 [Oryza sativa Japonica Group]
gi|90265163|emb|CAH67731.1| H0522A01.2 [Oryza sativa Indica Group]
gi|113564751|dbj|BAF15094.1| Os04g0492900 [Oryza sativa Japonica Group]
gi|116310744|emb|CAH67539.1| H0425E08.7 [Oryza sativa Indica Group]
gi|125548841|gb|EAY94663.1| hypothetical protein OsI_16441 [Oryza sativa Indica Group]
Length = 479
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 111/184 (60%), Gaps = 8/184 (4%)
Query: 344 KLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRG 403
KLAR + + L A AL+K+E P+E DPE +T EE F F K+G + K ++ +GRRG
Sbjct: 148 KLARNKEERLVA--ALTKIEPD-DPSEPTHDPEVLTPEEHFYFLKMGQKSKNYVPVGRRG 204
Query: 404 VFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVV 463
++ G + NMHLHWK + +++IVK T D+ K+IA L SGG+++ I +G +++
Sbjct: 205 IYQGVILNMHLHWKKHQTLQVIVKTFTPDEVKEIASELARLSGGIVLD---IQEGNTIIM 261
Query: 464 YRGKDYQRPS--TLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMN 521
YRGK+Y +P + PK L ++KAL +S +R AL +++ LE L ++++
Sbjct: 262 YRGKNYAQPPPEIMSPKVTLPRKKALDKSKYRERLRALRRYIPRLEQELVDLHAQMKLAR 321
Query: 522 SVKG 525
KG
Sbjct: 322 DYKG 325
>gi|238007578|gb|ACR34824.1| unknown [Zea mays]
gi|414586597|tpg|DAA37168.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
Length = 342
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 110/181 (60%), Gaps = 6/181 (3%)
Query: 339 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 398
+K+ KL A +K R AL K+E P+E DPE +T EE F F K+G + K ++
Sbjct: 5 EKILYKLKLARKKEERLVVALKKIEPE-DPSEPTHDPEVLTPEEHFYFLKMGQKCKNYVP 63
Query: 399 LGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKG 458
+GRRG++ G + NMHLHWK + +++IVK T ++ K+IA+ L SGG+++ I G
Sbjct: 64 VGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIAIELATLSGGIVLD---IQDG 120
Query: 459 YAMVVYRGKDYQRPS--TLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSE 516
+++YRGK+Y +P + PK L+++KAL +S +++ AL +++ LE L ++
Sbjct: 121 NTIIMYRGKNYAQPPPEIMSPKVSLSRKKALDKSKYMEKLRALRRYIPRLEQELEDLHAQ 180
Query: 517 I 517
+
Sbjct: 181 M 181
>gi|224132018|ref|XP_002321235.1| predicted protein [Populus trichocarpa]
gi|222862008|gb|EEE99550.1| predicted protein [Populus trichocarpa]
Length = 413
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 147/276 (53%), Gaps = 13/276 (4%)
Query: 339 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 398
+K+ KL +A+RK R +AL K+E + +E DPE +T EE F F K+GL+ K ++
Sbjct: 92 EKILYKLRKAQRKEERFVQALKKIEPK-ESSEATHDPEILTPEEHFFFLKMGLKCKNYVP 150
Query: 399 LGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKG 458
+GRRG++ G + NMHLHWK + +K++VK T ++ K+IA L +GG+++ I +
Sbjct: 151 VGRRGIYQGVILNMHLHWKKHQTLKVVVKTFTPEEVKEIAAELARFTGGIVLD---IHEE 207
Query: 459 YAMVVYRGKDYQRPST--LRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSE 516
+++YRGK+Y +P T + P+ L+++KAL +S AL +++ L+ + L +
Sbjct: 208 NTIIMYRGKNYSQPPTEIMSPRVTLSRKKALDKSKCRDGLRALRRYIPRLQQDLELLHAR 267
Query: 517 IEQMNSVKGTGDEQLYDKL--DSAYATEDDDSEDEGDEAYLEMYAG-GNDNEDEID---- 569
+ G + K +S E D +DEG E + G +D+ED D
Sbjct: 268 AGGKTDIDGAESRSISSKQLENSEKLKEIIDRQDEGSEDGPDTDLGIASDSEDLSDIFET 327
Query: 570 NSTHNLEMESDFPYHAQDQESETELMDSESEAYTVH 605
+S + E S P + ++ E + D E E + H
Sbjct: 328 DSDADTEETSKRPLYLEEFEKFSVEADGEPEDFEEH 363
>gi|212723506|ref|NP_001132081.1| uncharacterized protein LOC100193495 [Zea mays]
gi|194693368|gb|ACF80768.1| unknown [Zea mays]
gi|414586598|tpg|DAA37169.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
gi|414586599|tpg|DAA37170.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
Length = 485
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 111/182 (60%), Gaps = 6/182 (3%)
Query: 339 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 398
+K+ KL A +K R AL K+E P+E DPE +T EE F F K+G + K ++
Sbjct: 148 EKILYKLKLARKKEERLVVALKKIEPE-DPSEPTHDPEVLTPEEHFYFLKMGQKCKNYVP 206
Query: 399 LGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKG 458
+GRRG++ G + NMHLHWK + +++IVK T ++ K+IA+ L SGG+++ I G
Sbjct: 207 VGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIAIELATLSGGIVLD---IQDG 263
Query: 459 YAMVVYRGKDYQRPS--TLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSE 516
+++YRGK+Y +P + PK L+++KAL +S +++ AL +++ LE L ++
Sbjct: 264 NTIIMYRGKNYAQPPPEIMSPKVSLSRKKALDKSKYMEKLRALRRYIPRLEQELEDLHAQ 323
Query: 517 IE 518
++
Sbjct: 324 MK 325
>gi|357167884|ref|XP_003581379.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Brachypodium distachyon]
Length = 485
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 112/189 (59%), Gaps = 6/189 (3%)
Query: 339 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 398
+K+ KL A +K R AL K+E + P+E DPE +T EE F F K+G + K ++
Sbjct: 148 EKILYKLKLARKKEERLLAALKKIEPN-DPSEPTHDPEVLTPEEHFYFLKMGQKSKNYVP 206
Query: 399 LGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKG 458
+GRRG++ G + NMHLHWK + +++IVK T ++ K+IA L SGG+++S I +G
Sbjct: 207 VGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIASELAILSGGIVLS---IQEG 263
Query: 459 YAMVVYRGKDYQRPS--TLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSE 516
+++YRGK+Y +P + PK L ++KAL +S R AL +++ LE L ++
Sbjct: 264 NTIIMYRGKNYAQPPPEIMSPKIALPRKKALDKSKYRDRLRALRRYIPRLEQELEDLHAQ 323
Query: 517 IEQMNSVKG 525
++ +G
Sbjct: 324 MKLSGGHRG 332
>gi|242073570|ref|XP_002446721.1| hypothetical protein SORBIDRAFT_06g021160 [Sorghum bicolor]
gi|241937904|gb|EES11049.1| hypothetical protein SORBIDRAFT_06g021160 [Sorghum bicolor]
Length = 484
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 112/189 (59%), Gaps = 6/189 (3%)
Query: 339 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 398
+K+ KL A +K R AL K+E P+E DPE +T EE F F K+G + K ++
Sbjct: 147 EKILYKLKLARKKEERLVAALKKIEPE-DPSEPTHDPEVLTPEEHFYFLKMGQKCKNYVP 205
Query: 399 LGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKG 458
+GRRG++ G + NMHLHWK + +++IVK T ++ K+IA L SGG+++ I G
Sbjct: 206 VGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIATELARLSGGIVLD---IQDG 262
Query: 459 YAMVVYRGKDYQRPS--TLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSE 516
+++YRGK+Y +P + PK L+++KAL +S +++ AL +++ LE L ++
Sbjct: 263 NTIIMYRGKNYAQPPPEIMSPKVSLSRKKALDKSKYMEKLRALRRYIPRLEQELEDLHAQ 322
Query: 517 IEQMNSVKG 525
++ KG
Sbjct: 323 MKLAGEHKG 331
>gi|225448146|ref|XP_002263852.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Vitis vinifera]
Length = 401
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 133/232 (57%), Gaps = 7/232 (3%)
Query: 339 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 398
+K+ KL +A RK R AL+K+E + +E DPE +T EE F F K+GL+ K ++
Sbjct: 75 EKILYKLRKARRKEERLAEALTKIEPK-ESSETTHDPEILTPEEHFFFLKMGLKCKNYVP 133
Query: 399 LGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKG 458
+GRRG++ G + NMHLHWK + ++++VK + ++ K+IA+ L +GG+++ I +
Sbjct: 134 IGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSPEEVKEIAVELARLTGGIVLD---IHEE 190
Query: 459 YAMVVYRGKDYQRPST--LRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSE 516
+++YRGK+Y +P T + P+ L+++KAL +S A+ K++ LE + L+++
Sbjct: 191 NTIIMYRGKNYSQPPTEIMSPRITLSRKKALDKSKYRDGLRAVRKYIPRLEGDLELLQAQ 250
Query: 517 IEQMNSVKGTGDEQLYD-KLDSAYATEDDDSEDEGDEAYLEMYAGGNDNEDE 567
+ K E + +DS + + + E + E+ AG N++ +E
Sbjct: 251 AKMQAENKTEAVEDFQNANIDSINSQGISNLQPENSDKLRELLAGNNESSEE 302
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 183 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLS-RN 241
+ +GR QG+ + M W+K ++ +K E VE + +LTGG +L
Sbjct: 131 YVPIGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSPEEVKEIAVE-LARLTGGIVLDIHE 189
Query: 242 KDFLVFYRGKNFLSPDVTEALQERERLA--KSLQDEEEQARLRASAFVLPSIE 292
++ ++ YRGKN+ P TE + R L+ K+L + + LRA +P +E
Sbjct: 190 ENTIIMYRGKNYSQPP-TEIMSPRITLSRKKALDKSKYRDGLRAVRKYIPRLE 241
>gi|297739537|emb|CBI29719.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 133/232 (57%), Gaps = 7/232 (3%)
Query: 339 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 398
+K+ KL +A RK R AL+K+E + +E DPE +T EE F F K+GL+ K ++
Sbjct: 5 EKILYKLRKARRKEERLAEALTKIEPK-ESSETTHDPEILTPEEHFFFLKMGLKCKNYVP 63
Query: 399 LGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKG 458
+GRRG++ G + NMHLHWK + ++++VK + ++ K+IA+ L +GG+++ I +
Sbjct: 64 IGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSPEEVKEIAVELARLTGGIVLD---IHEE 120
Query: 459 YAMVVYRGKDYQRPST--LRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSE 516
+++YRGK+Y +P T + P+ L+++KAL +S A+ K++ LE + L+++
Sbjct: 121 NTIIMYRGKNYSQPPTEIMSPRITLSRKKALDKSKYRDGLRAVRKYIPRLEGDLELLQAQ 180
Query: 517 IEQMNSVKGTGDEQLYD-KLDSAYATEDDDSEDEGDEAYLEMYAGGNDNEDE 567
+ K E + +DS + + + E + E+ AG N++ +E
Sbjct: 181 AKMQAENKTEAVEDFQNANIDSINSQGISNLQPENSDKLRELLAGNNESSEE 232
Score = 39.3 bits (90), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 183 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLS-RN 241
+ +GR QG+ + M W+K ++ +K E VE + +LTGG +L
Sbjct: 61 YVPIGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSPEEVKEIAVE-LARLTGGIVLDIHE 119
Query: 242 KDFLVFYRGKNFLSPDVTEALQERERLA--KSLQDEEEQARLRASAFVLPSIE 292
++ ++ YRGKN+ P TE + R L+ K+L + + LRA +P +E
Sbjct: 120 ENTIIMYRGKNYSQPP-TEIMSPRITLSRKKALDKSKYRDGLRAVRKYIPRLE 171
>gi|356501797|ref|XP_003519710.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Glycine max]
Length = 382
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 110/181 (60%), Gaps = 6/181 (3%)
Query: 339 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 398
+K+ KL +A +K R AL K+E + + +E DPE +T EE F F K+GL+ K ++
Sbjct: 80 EKILYKLLKARKKEERLCEALKKIEPA-ESSETTHDPEILTPEEHFFFLKMGLKSKNYVP 138
Query: 399 LGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKG 458
+GRRG++ G + NMHLHWK + +K++VK + ++ K+IA L SGG+++ I +
Sbjct: 139 VGRRGIYQGVILNMHLHWKKHQTLKVVVKTFSAEEVKEIATELARLSGGIVLD---IHED 195
Query: 459 YAMVVYRGKDYQRPST--LRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSE 516
+++YRGK+Y +P T + P+ L+++KAL +S A+ +H+ LE LR++
Sbjct: 196 NTIIMYRGKNYSQPPTEIMSPRVSLSRKKALDKSKYRDALRAVRRHIPRLEQELEILRAQ 255
Query: 517 I 517
Sbjct: 256 F 256
Score = 39.3 bits (90), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 183 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNK 242
+ +GR QG+ + M W+K K+ +K E + ++ +L+GG +L ++
Sbjct: 136 YVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFSAEEVKE-IATELARLSGGIVLDIHE 194
Query: 243 D-FLVFYRGKNFLSPDVTEALQERERLA--KSLQDEEEQARLRASAFVLPSIE 292
D ++ YRGKN+ P TE + R L+ K+L + + LRA +P +E
Sbjct: 195 DNTIIMYRGKNYSQPP-TEIMSPRVSLSRKKALDKSKYRDALRAVRRHIPRLE 246
>gi|9279724|dbj|BAB01314.1| unnamed protein product [Arabidopsis thaliana]
Length = 1115
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 111/182 (60%), Gaps = 6/182 (3%)
Query: 339 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 398
+K+ KL +A +K R + K+E S + AE DPE +T EE F + K+GL+ K ++
Sbjct: 810 EKILNKLRKARKKEERLMETMKKLEPS-ESAETTHDPEILTPEEHFYYLKMGLKCKNYVP 868
Query: 399 LGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKG 458
+GRRG++ G + NMHLHWK + +++++K T D+ K+IA+ L +GG+++ V +G
Sbjct: 869 VGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVH---EG 925
Query: 459 YAMVVYRGKDYQRPST--LRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSE 516
+++YRGK+Y +P T + P+ L ++KAL +S A+ K++ LE L+++
Sbjct: 926 NTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQ 985
Query: 517 IE 518
E
Sbjct: 986 AE 987
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 183 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNK 242
+ +GR QG+ + M W+K ++ +K E VE + +LTGG +L ++
Sbjct: 866 YVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVE-LARLTGGIVLDVHE 924
Query: 243 -DFLVFYRGKNFLSPDVTEALQERERLA--KSLQDEEEQARLRASAFVLPSIE 292
+ ++ YRGKN++ P TE + R L K+L + + LRA +P +E
Sbjct: 925 GNTIIMYRGKNYVQPP-TEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLE 976
>gi|297831446|ref|XP_002883605.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297329445|gb|EFH59864.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1055
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 110/182 (60%), Gaps = 6/182 (3%)
Query: 339 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 398
+K+ KL +A +K R + K+E S + AE DPE +T EE F + K+GL+ K ++
Sbjct: 753 EKILNKLTKARKKEERLMETMKKLEPS-ESAETTHDPEILTPEEHFYYLKMGLKCKNYVP 811
Query: 399 LGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKG 458
+GRRG++ G + NMHLHWK + +++++K T D+ +IA+ L +GG+++ V +G
Sbjct: 812 VGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVNEIAVELARLTGGIVLDVH---EG 868
Query: 459 YAMVVYRGKDYQRPST--LRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSE 516
+++YRGK+Y +P T + P+ L ++KAL +S A+ K++ LE L+++
Sbjct: 869 NTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQ 928
Query: 517 IE 518
E
Sbjct: 929 AE 930
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Query: 183 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNK 242
+ +GR QG+ + M W+K ++ +K +E VE + +LTGG +L ++
Sbjct: 809 YVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVNEIAVE-LARLTGGIVLDVHE 867
Query: 243 -DFLVFYRGKNFLSPDVTEALQERERLA--KSLQDEEEQARLRASAFVLPSIE 292
+ ++ YRGKN++ P TE + R L K+L + + LRA +P +E
Sbjct: 868 GNTIIMYRGKNYVQPP-TEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLE 919
>gi|79417439|ref|NP_189171.2| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
gi|75116513|sp|Q67XL4.1|Y3544_ARATH RecName: Full=Uncharacterized CRM domain-containing protein
At3g25440, chloroplastic; Flags: Precursor
gi|51971805|dbj|BAD44567.1| unknown protein [Arabidopsis thaliana]
gi|332643490|gb|AEE77011.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
Length = 444
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 111/182 (60%), Gaps = 6/182 (3%)
Query: 339 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 398
+K+ KL +A +K R + K+E S + AE DPE +T EE F + K+GL+ K ++
Sbjct: 139 EKILNKLRKARKKEERLMETMKKLEPS-ESAETTHDPEILTPEEHFYYLKMGLKCKNYVP 197
Query: 399 LGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKG 458
+GRRG++ G + NMHLHWK + +++++K T D+ K+IA+ L +GG+++ V +G
Sbjct: 198 VGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDV---HEG 254
Query: 459 YAMVVYRGKDYQRPST--LRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSE 516
+++YRGK+Y +P T + P+ L ++KAL +S A+ K++ LE L+++
Sbjct: 255 NTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQ 314
Query: 517 IE 518
E
Sbjct: 315 AE 316
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 183 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNK 242
+ +GR QG+ + M W+K ++ +K E VE + +LTGG +L ++
Sbjct: 195 YVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVE-LARLTGGIVLDVHE 253
Query: 243 -DFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQAR--LRASAFVLPSIE 292
+ ++ YRGKN++ P TE + R L + ++ + R LRA +P +E
Sbjct: 254 GNTIIMYRGKNYVQPP-TEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLE 305
>gi|145332683|ref|NP_001078207.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
gi|332643491|gb|AEE77012.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
Length = 380
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 111/182 (60%), Gaps = 6/182 (3%)
Query: 339 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 398
+K+ KL +A +K R + K+E S + AE DPE +T EE F + K+GL+ K ++
Sbjct: 75 EKILNKLRKARKKEERLMETMKKLEPS-ESAETTHDPEILTPEEHFYYLKMGLKCKNYVP 133
Query: 399 LGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKG 458
+GRRG++ G + NMHLHWK + +++++K T D+ K+IA+ L +GG+++ V +G
Sbjct: 134 VGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDV---HEG 190
Query: 459 YAMVVYRGKDYQRPST--LRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSE 516
+++YRGK+Y +P T + P+ L ++KAL +S A+ K++ LE L+++
Sbjct: 191 NTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQ 250
Query: 517 IE 518
E
Sbjct: 251 AE 252
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 183 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNK 242
+ +GR QG+ + M W+K ++ +K E VE + +LTGG +L ++
Sbjct: 131 YVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVE-LARLTGGIVLDVHE 189
Query: 243 -DFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQAR--LRASAFVLPSIE 292
+ ++ YRGKN++ P TE + R L + ++ + R LRA +P +E
Sbjct: 190 GNTIIMYRGKNYVQPP-TEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLE 241
>gi|255572670|ref|XP_002527268.1| conserved hypothetical protein [Ricinus communis]
gi|223533361|gb|EEF35112.1| conserved hypothetical protein [Ricinus communis]
Length = 458
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 117/197 (59%), Gaps = 7/197 (3%)
Query: 339 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 398
+KL KL +A++K R +AL K+E + +E DPE +T EE F F K+GL+ K ++
Sbjct: 133 EKLLYKLKKAQKKEERYVQALKKIE-PVDSSETTHDPEILTPEEHFFFLKMGLKCKNYVP 191
Query: 399 LGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKG 458
+GRRG++ G + NMHLHWK + V+++VK + ++ K+IA L +GG+++ I +
Sbjct: 192 VGRRGIYQGVILNMHLHWKKHQTVQVVVKTFSPEEVKEIAAELARLTGGIVLD---IHEE 248
Query: 459 YAMVVYRGKDYQRPST--LRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSE 516
+++YRGK+Y +P T + P+ L+++KAL +S A+ ++ LE + L+ +
Sbjct: 249 NTIIMYRGKNYSQPPTEIMSPRITLSRKKALDKSKYRDGLRAVRNYIPRLEQDLELLKVQ 308
Query: 517 -IEQMNSVKGTGDEQLY 532
+ + + +E LY
Sbjct: 309 SMGKAECGSASAEETLY 325
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 183 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLS-RN 241
+ +GR QG+ + M W+K ++ +K E + ++ +LTGG +L
Sbjct: 189 YVPVGRRGIYQGVILNMHLHWKKHQTVQVVVKTFSPEEVKE-IAAELARLTGGIVLDIHE 247
Query: 242 KDFLVFYRGKNFLSPDVTEALQERERLA--KSLQDEEEQARLRASAFVLPSIE 292
++ ++ YRGKN+ P TE + R L+ K+L + + LRA +P +E
Sbjct: 248 ENTIIMYRGKNYSQPP-TEIMSPRITLSRKKALDKSKYRDGLRAVRNYIPRLE 299
>gi|356498434|ref|XP_003518057.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like, partial [Glycine max]
Length = 383
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 107/176 (60%), Gaps = 6/176 (3%)
Query: 344 KLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRG 403
KL +A +K R AL K+E + + +E DPE +T EE F F K+GL+ K ++ +GRRG
Sbjct: 65 KLLKARKKEERLCEALKKIEPA-ESSETTHDPEILTPEEHFFFLKMGLKSKNYVPVGRRG 123
Query: 404 VFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVV 463
++ G + NMHLHWK + +K++VK + ++ K+IA L SGG+++ I + +++
Sbjct: 124 IYQGVILNMHLHWKKHQTLKVVVKTFSAEEVKEIAAELARLSGGIVLD---IHEDNTIIM 180
Query: 464 YRGKDYQRPST--LRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEI 517
YRGK+Y +P T + P+ L+++KAL +S A+ +++ LE LR++
Sbjct: 181 YRGKNYSQPPTEIMSPRVSLSRKKALDKSKYRDALRAVRRYIPRLEQELEILRAQF 236
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 72/146 (49%), Gaps = 6/146 (4%)
Query: 183 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNK 242
+ +GR QG+ + M W+K K+ +K E + ++ +L+GG +L ++
Sbjct: 116 YVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFSAEEVKE-IAAELARLSGGIVLDIHE 174
Query: 243 D-FLVFYRGKNFLSPDVTEALQERERLA--KSLQDEEEQARLRASAFVLPSIETIEKSGT 299
D ++ YRGKN+ P TE + R L+ K+L + + LRA +P +E E
Sbjct: 175 DNTIIMYRGKNYSQP-PTEIMSPRVSLSRKKALDKSKYRDALRAVRRYIPRLEQ-ELEIL 232
Query: 300 AGTLKETLDANSRWGKRLDDSHKENL 325
K + ++N+ + + +S +E++
Sbjct: 233 RAQFKSSAESNTDAAEAIQNSGRESI 258
>gi|449458069|ref|XP_004146770.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
gi|449516505|ref|XP_004165287.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
Length = 500
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 116/200 (58%), Gaps = 6/200 (3%)
Query: 339 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 398
+K+ K+ +A +K R AL K+E + ++ DPE +T EE F F K+G++ K ++
Sbjct: 173 EKILFKMNKARKKEKRLVEALEKIEPA-DSSDTTHDPEILTPEEHFYFLKMGIKGKNYVP 231
Query: 399 LGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKG 458
+GRRG++ G + NMHLHWK + VK++VK + ++ K+IA L +GG+++ I +
Sbjct: 232 VGRRGIYQGVILNMHLHWKKHQTVKVVVKTFSPEEVKEIAAELARLTGGLVLD---IHEE 288
Query: 459 YAMVVYRGKDYQRPST--LRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSE 516
+++YRGK+Y +P T + P+ L+++KAL +S A+ KH+ LE L+S+
Sbjct: 289 DTIIMYRGKNYSQPPTEIMSPRVSLSRKKALDKSKYRDGLRAVRKHIPKLEQELRFLQSQ 348
Query: 517 IEQMNSVKGTGDEQLYDKLD 536
+ G E + + +D
Sbjct: 349 AKLNCKSNGESVEHMQETVD 368
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 183 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLS-RN 241
+ +GR QG+ + M W+K K+ +K E + ++ +LTGG +L
Sbjct: 229 YVPVGRRGIYQGVILNMHLHWKKHQTVKVVVKTFSPEEVKE-IAAELARLTGGLVLDIHE 287
Query: 242 KDFLVFYRGKNFLSPDVTEALQERERLA--KSLQDEEEQARLRASAFVLPSIE 292
+D ++ YRGKN+ P TE + R L+ K+L + + LRA +P +E
Sbjct: 288 EDTIIMYRGKNYSQPP-TEIMSPRVSLSRKKALDKSKYRDGLRAVRKHIPKLE 339
>gi|357439975|ref|XP_003590265.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355479313|gb|AES60516.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 443
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 134/255 (52%), Gaps = 27/255 (10%)
Query: 344 KLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRG 403
KL +A +K R AL K+E + + +E DPE +T EE F F K+GL+ K ++ +GRRG
Sbjct: 125 KLLKARKKEERLREALKKIEPT-ESSETIHDPEILTPEEHFFFLKMGLKSKNYVPVGRRG 183
Query: 404 VFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVV 463
++ G + NMHLHWK + ++++VK + ++ K+IA L +GG+++ I + +++
Sbjct: 184 IYQGVILNMHLHWKKHQTLQVVVKTFSAEEVKEIATELARLTGGIVLG---IHEEDTIIM 240
Query: 464 YRGKDYQRPST--LRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMN 521
YRGK+Y +P T + P+ L ++KAL +S A+ +++ LE LR++ +
Sbjct: 241 YRGKNYSQPPTEIMSPRVTLPRKKALDKSKYRDGLRAVRRYIPKLEQELEILRAQFQSTA 300
Query: 522 SVKGTGDE--QLYD---------------KLDSAYATEDDDSEDEGDEAY----LEMYAG 560
E Q+ D KLD A +D++ DEA+ L+ Y+
Sbjct: 301 ESNTEAAEGIQISDKVSVEPSSVSNLQLEKLDKVGAMFNDNNSCSEDEAHMDSDLDSYSD 360
Query: 561 GNDNEDEIDNSTHNL 575
+ E D+ T +L
Sbjct: 361 KLSDIFETDSDTEDL 375
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 183 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLS-RN 241
+ +GR QG+ + M W+K ++ +K E + ++ +LTGG +L
Sbjct: 176 YVPVGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSAEEVKE-IATELARLTGGIVLGIHE 234
Query: 242 KDFLVFYRGKNFLSPDVTEALQERERLA--KSLQDEEEQARLRASAFVLPSIE 292
+D ++ YRGKN+ P TE + R L K+L + + LRA +P +E
Sbjct: 235 EDTIIMYRGKNYSQPP-TEIMSPRVTLPRKKALDKSKYRDGLRAVRRYIPKLE 286
>gi|125590852|gb|EAZ31202.1| hypothetical protein OsJ_15301 [Oryza sativa Japonica Group]
Length = 484
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 91/144 (63%), Gaps = 8/144 (5%)
Query: 344 KLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRG 403
KLAR + + L A AL+K+E P+E DPE +T EE F F K+G + K ++ +GRRG
Sbjct: 148 KLARNKEERLVA--ALTKIEPD-DPSEPTHDPEVLTPEEHFYFLKMGQKSKNYVPVGRRG 204
Query: 404 VFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVV 463
++ G + NMHLHWK + +++IVK T D+ K+IA L SGG+++ I +G +++
Sbjct: 205 IYQGVILNMHLHWKKHQTLQVIVKTFTPDEVKEIASELARLSGGIVLD---IQEGNTIIM 261
Query: 464 YRGKDYQRPS--TLRPKNLLTKRK 485
YRGK+Y +P + PK L ++K
Sbjct: 262 YRGKNYAQPPPEIMSPKVTLPRKK 285
>gi|326507158|dbj|BAJ95656.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 115
Score = 105 bits (263), Expect = 6e-20, Method: Composition-based stats.
Identities = 48/76 (63%), Positives = 57/76 (75%)
Query: 112 YEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEAT 171
YE EV +LLD LGPR+ DW PLPVDAD+LP +VPG++ PFR P GVR TLA +E T
Sbjct: 20 YEREVNRLLDSLGPRFVDWWWNTPLPVDADLLPEVVPGFKTPFRQCPPGVRPTLADEELT 79
Query: 172 NLQRLARVLPPHFALG 187
L++LAR LP HFALG
Sbjct: 80 YLRKLARPLPTHFALG 95
>gi|357439925|ref|XP_003590240.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355479288|gb|AES60491.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 472
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 92/146 (63%), Gaps = 6/146 (4%)
Query: 344 KLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRG 403
KL +A +K R AL K+E + + +E DPE +T EE F F K+GL+ K ++ +GRRG
Sbjct: 125 KLLKARKKEERLREALKKIEPT-ESSETIHDPEILTPEEHFFFLKMGLKSKNYVPVGRRG 183
Query: 404 VFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVV 463
++ G + NMHLHWK + ++++VK + ++ K+IA L +GG+++ I + +++
Sbjct: 184 IYQGVILNMHLHWKKHQTLQVVVKTFSAEEVKEIATELARLTGGIVLG---IHEEDTIIM 240
Query: 464 YRGKDYQRPST--LRPKNLLTKRKAL 487
YRGK+Y +P T + P+ L ++K L
Sbjct: 241 YRGKNYSQPPTEIMSPRVTLPRKKVL 266
>gi|326494498|dbj|BAJ90518.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326502328|dbj|BAJ95227.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 95
Score = 104 bits (259), Expect = 2e-19, Method: Composition-based stats.
Identities = 48/76 (63%), Positives = 57/76 (75%)
Query: 112 YEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEAT 171
YE EV +LLD LGPR+ DW PLPVDAD+LP +VPG++ PFR P GVR TLA +E T
Sbjct: 20 YEREVNRLLDSLGPRFVDWWWNTPLPVDADLLPEVVPGFKTPFRQCPPGVRPTLADEELT 79
Query: 172 NLQRLARVLPPHFALG 187
L++LAR LP HFALG
Sbjct: 80 YLRKLARPLPTHFALG 95
>gi|356560779|ref|XP_003548665.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized CRM
domain-containing protein At3g25440, chloroplastic-like
[Glycine max]
Length = 273
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 145/255 (56%), Gaps = 24/255 (9%)
Query: 335 AYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMK 394
Y+VQ++ L +A++K R AL K+E + K +E DPE + EE F F K+GL+ K
Sbjct: 16 TYVVQRI-PSLTKAQKKKKRLCEALKKIEPA-KSSETTHDPEILXPEEHFFFLKMGLKRK 73
Query: 395 AFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQA--KKIALALEAESGGVLVSV 452
+ +GRRG++ G + +MHLH K + +K+ VKTF A K+IA L SGG+++
Sbjct: 74 NNVPVGRRGIYQGVILSMHLHXKKHQTLKV---VKTFSAAEVKEIAAELARLSGGIVLD- 129
Query: 453 DKISKGYAMVVYRGKDYQRPST--LRPKNLLTKRKALARS-IELQRQEALLKHVATLESN 509
I + +++YRGK+Y +P T + P+ L+++KAL +S L+++ A+L+ A +S+
Sbjct: 130 --IHEDNTIIMYRGKNYSQPPTQIMSPRVSLSRKKALDKSKYRLEQELAILR--AQFKSS 185
Query: 510 AGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATEDDDSEDEGDEAYL-EMYAGGNDNEDEI 568
A S+ E +++ +G E ++S D +SE + D L +++ +D E+ +
Sbjct: 186 A---ESKTEAAEAIQNSGRES----IESGKDETDMNSELDSDSDKLSDIFETDSDTENFV 238
Query: 569 DNSTH-NLEMESDFP 582
+ NL+ +FP
Sbjct: 239 NEEKPLNLDDFDNFP 253
>gi|326506924|dbj|BAJ91503.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 118
Score = 102 bits (254), Expect = 7e-19, Method: Composition-based stats.
Identities = 47/75 (62%), Positives = 56/75 (74%)
Query: 112 YEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEAT 171
YE EV +LLD LGPR+ DW PLPVDAD+LP +VPG++ PFR P GVR TLA +E T
Sbjct: 20 YEREVNRLLDSLGPRFVDWWWNTPLPVDADLLPEVVPGFKTPFRQCPPGVRPTLADEELT 79
Query: 172 NLQRLARVLPPHFAL 186
L++LAR LP HFAL
Sbjct: 80 YLRKLARPLPTHFAL 94
>gi|413946393|gb|AFW79042.1| hypothetical protein ZEAMMB73_840751, partial [Zea mays]
Length = 140
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 83/142 (58%), Gaps = 2/142 (1%)
Query: 225 MVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRAS 284
M E+IK LTGGTLL RNK ++V YRGK+FL V L ERE L K + + EEQ R
Sbjct: 1 MAEEIKNLTGGTLLLRNKFYIVIYRGKDFLPTSVAAVLAEREELTKDIYNMEEQR--RRV 58
Query: 285 AFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKK 344
PS + ++ AGTL E +A +RWG+ + +E + + L +KLE K
Sbjct: 59 LITQPSDDGLDGHALAGTLAEFQEAQARWGREVTAKEQEEMKEASSRSEKQKLYRKLEHK 118
Query: 345 LARAERKLLRAERALSKVEESL 366
L+ A+ K+ RAER LSK+E SL
Sbjct: 119 LSIAQAKIHRAERLLSKIEASL 140
>gi|242076260|ref|XP_002448066.1| hypothetical protein SORBIDRAFT_06g020410 [Sorghum bicolor]
gi|241939249|gb|EES12394.1| hypothetical protein SORBIDRAFT_06g020410 [Sorghum bicolor]
Length = 338
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 136/294 (46%), Gaps = 35/294 (11%)
Query: 275 EEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWG----------KRLDDSHKEN 324
EE + R R P + + G+ G +T +R+G R K+
Sbjct: 52 EEHRRRWR------PWFQQPVRCGSTGITLDTDGKFARFGVGDTGVAKQKGRQQSPPKKK 105
Query: 325 LVREAEVRRHAYLVQKLEKKL------ARAERKLLRAERALSKVEESLKP------AERQ 372
+ R+A+V + + K +KK+ R KL +A+R + E L+ E
Sbjct: 106 MSRKAKVNQLKWYRLKAKKKMKSPNPEVRIRYKLEKAKRKEEWLIEKLRKYDVPRTPEPV 165
Query: 373 ADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFD 432
DPE +T+EE+F ++ G + K ++ +GRRGVF G V NMHLHWK E VK++ K
Sbjct: 166 HDPEILTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKNHETVKVVCKPCRPG 225
Query: 433 QAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIE 492
Q + A L S G ++ I ++ YRGK+Y +P + P + L+K+KAL +
Sbjct: 226 QVYEYAEELTRLSKGTIID---IKPNNTIMFYRGKNYVQPQVMSPPDTLSKQKALEKYRY 282
Query: 493 LQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATEDDDS 546
LQ E + + LE + + + +G E K+ + ++T DD +
Sbjct: 283 LQSLEHTSQFIEKLEKELEDYKKHVALFKNREGVASE----KISNEHSTVDDPA 332
>gi|255567361|ref|XP_002524660.1| conserved hypothetical protein [Ricinus communis]
gi|223536021|gb|EEF37679.1| conserved hypothetical protein [Ricinus communis]
Length = 260
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 95/178 (53%), Gaps = 25/178 (14%)
Query: 315 KRLDDSHKENLVR---EAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAER 371
K+++ + E +R E R+ A+L++KL K E LRAE
Sbjct: 59 KKMNSPNPEVRIRYKLEKAKRKEAWLIEKLSK----FEVPKLRAE--------------- 99
Query: 372 QADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTF 431
DPE +T+EE+ ++ G + K F+L+GRRGVF G V NMHLHWK E VKII K
Sbjct: 100 TCDPEMLTEEEKHYLKRTGEKKKNFILVGRRGVFGGVVLNMHLHWKKHETVKIICKPCKP 159
Query: 432 DQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALAR 489
Q + A L S G+++ I +++ YRGK+Y +P+ + P + L+K KAL +
Sbjct: 160 GQIHQYAEELARLSKGIVID---IRPNNSIIFYRGKNYVQPTVMSPPDTLSKNKALEK 214
>gi|356511313|ref|XP_003524371.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Glycine max]
Length = 282
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 88/167 (52%), Gaps = 8/167 (4%)
Query: 340 KLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLL 399
++ KL +A+RK L K + KP DPE +T+EER ++ G R K ++ +
Sbjct: 88 RIRYKLEKAKRKETWLIEKLRKFDVP-KPPPETYDPEILTEEERHYLKRTGERKKHYVPV 146
Query: 400 GRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGY 459
GRRGVF G V NMHLHWK E VK+I K Q + A L S G+++ I
Sbjct: 147 GRRGVFGGVVLNMHLHWKNHETVKVICKPCKPGQVHEYAEELARLSKGIVID---IKPNN 203
Query: 460 AMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATL 506
++ YRGK+Y +P + P N L+K KAL E R E L+H +
Sbjct: 204 TIIFYRGKNYVKPEVMSPPNTLSKAKAL----EKYRYEQSLEHTSQF 246
>gi|357478871|ref|XP_003609721.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355510776|gb|AES91918.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 399
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 97/182 (53%), Gaps = 11/182 (6%)
Query: 340 KLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLL 399
++ KL +A+RK L K + P E DPE +T+EER ++ G + K ++ +
Sbjct: 215 RIRYKLEKAKRKETWLIEKLRKFDVPKLPTE-TFDPEILTEEERHYLKRTGEKKKHYVPV 273
Query: 400 GRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGY 459
GRRGVF G V NMHLHWK E VK+I K QA + A L S G+++ + S
Sbjct: 274 GRRGVFGGVVLNMHLHWKNHETVKVICKPCKPGQAHEYAEELARLSKGIVIDIKPNS--- 330
Query: 460 AMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQ 519
++ YRGK+Y +P + P + L+K KAL E R E L+H + RL E+E+
Sbjct: 331 IIIFYRGKNYVQPKVMSPPDTLSKAKAL----EKYRYEQSLEHTSQF---IERLEKELEE 383
Query: 520 MN 521
+
Sbjct: 384 YH 385
>gi|449438181|ref|XP_004136868.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
Length = 352
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 84/158 (53%), Gaps = 22/158 (13%)
Query: 332 RRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGL 391
R+ A+L++KL K E KP + DPE +T+EE+ ++ G
Sbjct: 171 RKEAWLIEKLRK-------------------FEIPKPFVEKYDPEILTEEEKHYLKRTGE 211
Query: 392 RMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVS 451
+ K F+LLGRRGVF G V NMH+HWK E VK+I K Q + A L S G+++
Sbjct: 212 KKKNFVLLGRRGVFGGVVLNMHMHWKKHETVKVICKPCKPGQVHEYAEELTRLSKGIVID 271
Query: 452 VDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALAR 489
I +++ YRGK+Y +P + P N L+K KAL +
Sbjct: 272 ---IKPNNSIIFYRGKNYVQPEVMSPPNTLSKDKALEK 306
>gi|356524301|ref|XP_003530768.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Glycine max]
Length = 282
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 93/178 (52%), Gaps = 11/178 (6%)
Query: 344 KLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRG 403
KL +A+RK L K + P E DPE +T+EER ++ G + K ++ +GRRG
Sbjct: 92 KLEKAKRKETWLVEKLRKFDVPKSPPE-TFDPEILTEEERHYLKRTGEKKKHYVPVGRRG 150
Query: 404 VFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVV 463
VF G V NMHLHWK E VK+I K Q + A L S G+++ I ++
Sbjct: 151 VFGGVVLNMHLHWKNHETVKVICKPCKPGQVHEYAEELARLSKGIVID---IKPNNTIIF 207
Query: 464 YRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMN 521
YRGK+Y +P + P N L+K KAL E R E L+H + RL E+E+ +
Sbjct: 208 YRGKNYVQPEVMSPPNTLSKVKAL----EKYRYEQSLEHTSQF---IERLEKELEEYH 258
>gi|449479099|ref|XP_004155504.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
Length = 290
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 79/140 (56%), Gaps = 7/140 (5%)
Query: 367 KPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIV 426
KP + DPE +T+EE+ ++ G + K F+LLGRRGVF G V NMH+HWK E VK+I
Sbjct: 125 KPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHETVKVIC 184
Query: 427 KVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKA 486
K Q + A L S G+++ I +++ YRGK+Y +P + P N L+K KA
Sbjct: 185 KPCKPGQVHEYAEELTRLSKGIVID---IKPNNSIIFYRGKNYVQPEVMSPPNTLSKDKA 241
Query: 487 LARSIELQRQEALLKHVATL 506
L E + E L+H +
Sbjct: 242 L----EKYKYEQSLEHTSQF 257
>gi|5123948|emb|CAB45506.1| putative protein [Arabidopsis thaliana]
gi|7268009|emb|CAB78349.1| putative protein [Arabidopsis thaliana]
Length = 332
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 93/166 (56%), Gaps = 9/166 (5%)
Query: 340 KLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLL 399
++ KL +A+RK L K + PAE DPES+T+EE+ ++ G + K F+L+
Sbjct: 134 RIRYKLEKAKRKEEWLIEKLRKYDVPKSPAE-PYDPESLTEEEQHYLKRTGEKRKNFVLV 192
Query: 400 GRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQAKKIALALEAESGGVLVSVDKISKG 458
GRRGVF G V N+HLHWK E VK+I K Q + A L S G+++ V +
Sbjct: 193 GRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHEYAEELARLSKGIVIDVKPNN-- 250
Query: 459 YAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVA 504
+V+YRGK+Y RP + P + L+K KAL E R E L+H +
Sbjct: 251 -TIVLYRGKNYVRPEVMSPVDTLSKDKAL----EKYRYEQSLEHTS 291
>gi|42566743|ref|NP_193043.2| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
gi|51968644|dbj|BAD43014.1| putative protein [Arabidopsis thaliana]
gi|51971084|dbj|BAD44234.1| putative protein [Arabidopsis thaliana]
gi|51971893|dbj|BAD44611.1| putative protein [Arabidopsis thaliana]
gi|63003852|gb|AAY25455.1| At4g13070 [Arabidopsis thaliana]
gi|115646846|gb|ABJ17138.1| At4g13070 [Arabidopsis thaliana]
gi|332657826|gb|AEE83226.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
Length = 343
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 93/166 (56%), Gaps = 9/166 (5%)
Query: 340 KLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLL 399
++ KL +A+RK L K + PAE DPES+T+EE+ ++ G + K F+L+
Sbjct: 145 RIRYKLEKAKRKEEWLIEKLRKYDVPKSPAE-PYDPESLTEEEQHYLKRTGEKRKNFVLV 203
Query: 400 GRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQAKKIALALEAESGGVLVSVDKISKG 458
GRRGVF G V N+HLHWK E VK+I K Q + A L S G+++ V +
Sbjct: 204 GRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHEYAEELARLSKGIVIDVKPNN-- 261
Query: 459 YAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVA 504
+V+YRGK+Y RP + P + L+K KAL E R E L+H +
Sbjct: 262 -TIVLYRGKNYVRPEVMSPVDTLSKDKAL----EKYRYEQSLEHTS 302
>gi|326525483|dbj|BAJ88788.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 340
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 101/199 (50%), Gaps = 5/199 (2%)
Query: 340 KLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLL 399
++ KL +A+RK L K E P E DPE +T+EE+F ++ G + K ++ +
Sbjct: 136 RIRYKLEKAKRKEEWLIEKLRKYEAPRAP-EPVHDPEILTEEEKFYLKRTGEKKKNYVPV 194
Query: 400 GRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGY 459
GRRGVF G V NMHLHWK E +K++ K Q + A L S G ++ I
Sbjct: 195 GRRGVFGGVVLNMHLHWKKHETMKVVCKPCRPGQVYEYAEELARLSKGTVID---IKPNN 251
Query: 460 AMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQ 519
++ YRGK+Y +P + P + L+K+KAL + Q E K + LE + +
Sbjct: 252 TIIFYRGKNYVQPKVMSPPDTLSKQKALEKYRYEQSLEHTSKFIEQLEQELEDYQKHVAL 311
Query: 520 MNSVKGTGDEQLYDKLDSA 538
+G EQ+ ++ DSA
Sbjct: 312 FKKREGANSEQISNE-DSA 329
Score = 38.9 bits (89), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 165 LARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSER 224
L +E L+R + +GR G+ + M W+K K+ K E
Sbjct: 173 LTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETMKVVCKPCRPGQVYE- 231
Query: 225 MVEDIKKLTGGTLLS-RNKDFLVFYRGKNFLSPDV 258
E++ +L+ GT++ + + ++FYRGKN++ P V
Sbjct: 232 YAEELARLSKGTVIDIKPNNTIIFYRGKNYVQPKV 266
>gi|357131757|ref|XP_003567501.1| PREDICTED: uncharacterized protein LOC100829186 [Brachypodium
distachyon]
Length = 402
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 94/175 (53%), Gaps = 11/175 (6%)
Query: 333 RHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLR 392
R Y ++K + K A KL R E ++K E + A P+ + EERF +K+ +
Sbjct: 138 RLKYKIEKAKLKEAMLIEKLKRYE--VAKAEGPV------AKPDDLNGEERFYLKKVSQK 189
Query: 393 MKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSV 452
++ +GRRGVF G + NMHLHWK E VK+I K Q ++ A + SGGV ++
Sbjct: 190 KSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSGGVPIN- 248
Query: 453 DKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLE 507
I +V YRGKDY +P + P + L+K+KAL +S Q E + + +A E
Sbjct: 249 --IVGNDTVVFYRGKDYVQPDVMSPIDTLSKKKALEKSKYEQSLETVRRFIAVSE 301
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Query: 173 LQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKL 232
L+++++ + +GR G+ + M W+K K+ K + + +I +L
Sbjct: 183 LKKVSQKKSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICK-PCKPGQIQEYASEIARL 241
Query: 233 TGGTLLS-RNKDFLVFYRGKNFLSPDV---TEALQERERLAKS 271
+GG ++ D +VFYRGK+++ PDV + L +++ L KS
Sbjct: 242 SGGVPINIVGNDTVVFYRGKDYVQPDVMSPIDTLSKKKALEKS 284
>gi|115467732|ref|NP_001057465.1| Os06g0304500 [Oryza sativa Japonica Group]
gi|113595505|dbj|BAF19379.1| Os06g0304500 [Oryza sativa Japonica Group]
gi|125596971|gb|EAZ36751.1| hypothetical protein OsJ_21087 [Oryza sativa Japonica Group]
Length = 348
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 111/222 (50%), Gaps = 25/222 (11%)
Query: 298 GTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKL------ARAERK 351
G AGT + R G+ + K+ + R+A+V + + K +KK+ R K
Sbjct: 94 GDAGTKQ----GAGRKGQPPAKAAKKKMSRKAKVNQLKWYRLKAKKKMKSPNPEVRIRYK 149
Query: 352 LLRAERA-------LSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGV 404
L +A+R L K E P E DPE +T+EE+F ++ G + K ++ +GRRGV
Sbjct: 150 LEKAKRKEEWLIEKLRKYEVPRSP-EPVHDPEILTEEEKFYLKRTGEKKKNYVPVGRRGV 208
Query: 405 FDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVY 464
F G V NMHLHWK E VK+I K Q + A L S G ++ I ++ Y
Sbjct: 209 FGGVVLNMHLHWKKHETVKVICKPCRPGQVYEYAEELTRLSKGTVID---IKPNNTIIFY 265
Query: 465 RGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATL 506
RGK+Y +P + P + L+K+KAL E R E L+H +
Sbjct: 266 RGKNYVQPKVMSPPDTLSKQKAL----EKYRYEQSLEHTSQF 303
>gi|242055631|ref|XP_002456961.1| hypothetical protein SORBIDRAFT_03g046420 [Sorghum bicolor]
gi|241928936|gb|EES02081.1| hypothetical protein SORBIDRAFT_03g046420 [Sorghum bicolor]
Length = 405
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 94/168 (55%), Gaps = 4/168 (2%)
Query: 340 KLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLL 399
+L+ K+ +A+ K +R L K E + K A P+ ++ EERF +K+ + ++ +
Sbjct: 136 RLKYKIEKAKLKEVRLVEKLKKYEVA-KAQGPMAKPDDLSGEERFYLKKVSQKKSNYVPV 194
Query: 400 GRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGY 459
GRRGVF G + NMHLHWK E VK+I K Q ++ A + SGG+ V+ I
Sbjct: 195 GRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYANEIARLSGGIPVN---IIGDD 251
Query: 460 AMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLE 507
+V YRGK+Y +P + P + L+K+KAL +S Q E + + +A E
Sbjct: 252 TIVFYRGKNYVQPEVMSPIDTLSKKKALEKSKYEQSLETVRRFIAISE 299
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 165 LARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSER 224
L+ +E L+++++ + +GR G+ + M W+K K+ K + +
Sbjct: 173 LSGEERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICK-PCKPGQIQE 231
Query: 225 MVEDIKKLTGGTLLSR-NKDFLVFYRGKNFLSPDV---TEALQERERLAKS 271
+I +L+GG ++ D +VFYRGKN++ P+V + L +++ L KS
Sbjct: 232 YANEIARLSGGIPVNIIGDDTIVFYRGKNYVQPEVMSPIDTLSKKKALEKS 282
>gi|225444203|ref|XP_002270373.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic [Vitis vinifera]
gi|296089227|emb|CBI38999.3| unnamed protein product [Vitis vinifera]
Length = 269
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 95/178 (53%), Gaps = 11/178 (6%)
Query: 344 KLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRG 403
KL +A+RK L K + P E DPE +T+EE+F ++ G + K ++ +GRRG
Sbjct: 89 KLEKAKRKEEWLIEKLRKFDIPKAPTE-AYDPEILTEEEKFYLKRTGEKKKNYVPVGRRG 147
Query: 404 VFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVV 463
VF G V NMHLHWK E VK+I K Q + A L S G+++ I ++
Sbjct: 148 VFGGVVLNMHLHWKKHETVKVICKPCKVGQVYEYAEELARLSKGIMID---IKPNNTIIF 204
Query: 464 YRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMN 521
YRGK+Y +P + P + L+K KAL E R E L+H + +L +E+E+ +
Sbjct: 205 YRGKNYVQPQVMSPPDTLSKSKAL----EKYRYEQSLEHTSQF---IEKLENELEEYH 255
>gi|255585329|ref|XP_002533362.1| conserved hypothetical protein [Ricinus communis]
gi|223526802|gb|EEF29024.1| conserved hypothetical protein [Ricinus communis]
Length = 412
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 104/200 (52%), Gaps = 24/200 (12%)
Query: 327 REAEVRRHA-------YLVQKLEKKLARAERKL-LRAERALSKVEESL-----------K 367
RE E RR A V++ ++K A AE ++ + ERA K++E+L K
Sbjct: 76 REKEKRRAANRRDPRCLTVKRKKQKFANAEERIKYKLERA--KIKEALLVERLKRYEVPK 133
Query: 368 PAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK 427
+ P +T EERF +K+ + ++ LGRRGVF G + NMH+HWK E VK+I
Sbjct: 134 VQGPEVKPHDLTGEERFFMKKMAQKQSNYVPLGRRGVFGGVILNMHMHWKKHETVKVICN 193
Query: 428 VKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKAL 487
Q + A + SGG+ + V I ++ YRGK+Y +P + P + L+K++AL
Sbjct: 194 FCKPGQVHEYAQEIARLSGGIPIQV--IGDD-TIIFYRGKNYVQPEVMSPIDTLSKKRAL 250
Query: 488 ARSIELQRQEALLKHVATLE 507
+S Q E++ + +A E
Sbjct: 251 EKSKYEQSLESVRRFIAIAE 270
Score = 42.0 bits (97), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 7/117 (5%)
Query: 147 VPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKS 206
VP Q P V P+ L +E ++++A+ + LGR G+ + M W+K
Sbjct: 131 VPKVQGP-EVKPHD----LTGEERFFMKKMAQKQSNYVPLGRRGVFGGVILNMHMHWKKH 185
Query: 207 SIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSR-NKDFLVFYRGKNFLSPDVTEAL 262
K+ E ++I +L+GG + D ++FYRGKN++ P+V +
Sbjct: 186 ETVKVICNFCKPGQVHE-YAQEIARLSGGIPIQVIGDDTIIFYRGKNYVQPEVMSPI 241
>gi|357124470|ref|XP_003563923.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Brachypodium distachyon]
Length = 337
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 107/205 (52%), Gaps = 19/205 (9%)
Query: 314 GKRLDDSHKENLVREAEVRRHAYLVQKLEKKL------ARAERKLLRAERALSKVEESLK 367
G++ ++K+ + R+++V + + K +KK+ R KL +A+R + E L+
Sbjct: 94 GQKQPPANKKKMSRKSKVNQLKWFRLKAKKKMKSPNPEVRIRYKLEKAKRKEEWLIEKLR 153
Query: 368 P------AERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYREL 421
E DPE +T+EE+F ++ G + K ++ +GRRGVF G V NMHLHWK E
Sbjct: 154 KYEVPRVPEPVHDPEILTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHET 213
Query: 422 VKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLL 481
+K++ K Q + A L S G ++ I ++ YRGK+Y +P + P + L
Sbjct: 214 MKVVCKPCRPGQVYEYAEELARLSKGTVID---IKPNNTIIFYRGKNYVQPKVMSPPDTL 270
Query: 482 TKRKALARSIELQRQEALLKHVATL 506
+K+KAL E R E L+H +
Sbjct: 271 SKQKAL----EKYRYEQSLEHTSQF 291
Score = 38.9 bits (89), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 183 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLS-RN 241
+ +GR G+ + M W+K K+ K E E++ +L+ GT++ +
Sbjct: 188 YVPVGRRGVFGGVVLNMHLHWKKHETMKVVCKPCRPGQVYE-YAEELARLSKGTVIDIKP 246
Query: 242 KDFLVFYRGKNFLSPDV 258
+ ++FYRGKN++ P V
Sbjct: 247 NNTIIFYRGKNYVQPKV 263
>gi|162459283|ref|NP_001105859.1| LOC732768 [Zea mays]
gi|89212802|gb|ABD63903.1| CFM6 [Zea mays]
gi|413918693|gb|AFW58625.1| hypothetical protein ZEAMMB73_217436 [Zea mays]
Length = 338
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 116/239 (48%), Gaps = 21/239 (8%)
Query: 322 KENLVREAEVRRHAYLVQKLEKKL------ARAERKLLRAERA-------LSKVEESLKP 368
K+ + R+A+V + + K +KK+ R KL +A+R L K E P
Sbjct: 102 KKKMSRKAKVNQLKWYRLKAKKKMKSPNPEVRIRYKLEKAKRKEEWLIEKLRKYEVPRTP 161
Query: 369 AERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKV 428
E DPE +T+EE+F ++ G + K ++ +GRRGVF G V NMHLHWK E VK++ K
Sbjct: 162 -EPVHDPEILTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVVCKP 220
Query: 429 KTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALA 488
Q + A L S G ++ I ++ YRGK+Y +P + P L+K+KAL
Sbjct: 221 CRPGQVYEYAEELTRLSKGTVID---IKPNNTIMFYRGKNYVQPKVMSPPETLSKQKALE 277
Query: 489 RSIELQRQEALLKHVATLESNAGRLRSEIEQM-NSVKGTGDEQLYDK---LDSAYATED 543
+ LQ E + + LE + + N KG E++ ++ +D T D
Sbjct: 278 KYRYLQSLEHTSQFIEKLEKELEDYKKHVALFKNHNKGVAIEKISNEDTTVDDPATTSD 336
>gi|297790600|ref|XP_002863185.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297309019|gb|EFH39444.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 343
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 94/169 (55%), Gaps = 15/169 (8%)
Query: 340 KLEKKLARAERK---LLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAF 396
++ KL +A+RK L+ R + S +P DPES+T+EE+ ++ G + K F
Sbjct: 145 RIRYKLEKAKRKEEWLIEKLRKYDVPKSSAEPY----DPESLTEEEQHYLKRTGEKRKNF 200
Query: 397 LLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQAKKIALALEAESGGVLVSVDKI 455
+L+GRRGVF G V N+HLHWK E VK+I K Q + A L S G+++ V
Sbjct: 201 VLVGRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHEYAEELARLSKGIVIDVKPN 260
Query: 456 SKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVA 504
+ +V+YRGK+Y RP + P + L+K KAL E R E L+H +
Sbjct: 261 N---TIVLYRGKNYVRPEVMSPVDTLSKDKAL----EKYRYEQSLEHTS 302
>gi|449437795|ref|XP_004136676.1| PREDICTED: uncharacterized protein LOC101208777 [Cucumis sativus]
gi|449494725|ref|XP_004159629.1| PREDICTED: uncharacterized LOC101208777 [Cucumis sativus]
Length = 431
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 76/133 (57%), Gaps = 3/133 (2%)
Query: 375 PESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQA 434
P +T EERF +K+G + ++ +GRRGVF G + NMH+HWK E VK+ K Q
Sbjct: 165 PHDLTGEERFYIKKMGQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQV 224
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQ 494
+ A + SGG+ + +I ++ YRGKDY +P + P + L+K++AL +S Q
Sbjct: 225 HEYAQEIARLSGGIPI---QIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQ 281
Query: 495 RQEALLKHVATLE 507
E++ + +A E
Sbjct: 282 SLESVRRFIAIAE 294
>gi|125555042|gb|EAZ00648.1| hypothetical protein OsI_22670 [Oryza sativa Indica Group]
Length = 304
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 91/170 (53%), Gaps = 5/170 (2%)
Query: 340 KLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLL 399
++ KL +A+RK L K E P E DPE +T+EE+F ++ G + K ++ +
Sbjct: 121 RIRYKLEKAKRKEEWLIEKLRKYEVPRSP-EPVHDPEILTEEEKFYLKRTGEKKKNYVPV 179
Query: 400 GRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGY 459
GRRGVF G V NMHLHWK E VK+I K Q + A L S G ++ I
Sbjct: 180 GRRGVFGGVVLNMHLHWKKHETVKVICKPCRPGQVYEYAEELTRLSKGTVID---IKPNN 236
Query: 460 AMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVA-TLES 508
++ YRGK+Y +P + P + L+K+K + Q+ AL K+ TLE+
Sbjct: 237 TIIFYRGKNYVQPKVMSPPDTLSKQKLEKELEDYQKHVALFKNRGETLET 286
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Query: 165 LARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSER 224
L +E L+R + +GR G+ + M W+K K+ K E
Sbjct: 158 LTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVICKPCRPGQVYE- 216
Query: 225 MVEDIKKLTGGTLLS-RNKDFLVFYRGKNFLSPDVTEALQ--ERERLAKSLQDEEEQARL 281
E++ +L+ GT++ + + ++FYRGKN++ P V +++L K L+D ++ L
Sbjct: 217 YAEELTRLSKGTVIDIKPNNTIIFYRGKNYVQPKVMSPPDTLSKQKLEKELEDYQKHVAL 276
>gi|356544514|ref|XP_003540695.1| PREDICTED: uncharacterized protein LOC100796393 [Glycine max]
Length = 426
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 77/133 (57%), Gaps = 3/133 (2%)
Query: 375 PESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQA 434
P+ +T EERF +K+ + +L +GRRG+F G V NMH+HWK E VK+ K Q
Sbjct: 169 PDDLTGEERFYLKKMAQKRSNYLQIGRRGLFGGVVLNMHMHWKKHETVKVFCKPCKPGQV 228
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQ 494
+ A L SGG+ + +I ++ YRGK+Y++P + P + L+K+KAL +S Q
Sbjct: 229 HEYAQELARLSGGIPL---QIIGDDTIIFYRGKNYEQPEVMSPIDTLSKKKALEKSKYEQ 285
Query: 495 RQEALLKHVATLE 507
E++ + +A E
Sbjct: 286 SLESVRRFIAIAE 298
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 10/129 (7%)
Query: 147 VPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKS 206
VP Q P V P L +E L+++A+ + +GR G+ + M W+K
Sbjct: 159 VPKAQGPV-VKP----DDLTGEERFYLKKMAQKRSNYLQIGRRGLFGGVVLNMHMHWKKH 213
Query: 207 SIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSR-NKDFLVFYRGKNFLSPDV---TEAL 262
K+ K E +++ +L+GG L D ++FYRGKN+ P+V + L
Sbjct: 214 ETVKVFCKPCKPGQVHE-YAQELARLSGGIPLQIIGDDTIIFYRGKNYEQPEVMSPIDTL 272
Query: 263 QERERLAKS 271
+++ L KS
Sbjct: 273 SKKKALEKS 281
>gi|297822421|ref|XP_002879093.1| hypothetical protein ARALYDRAFT_901658 [Arabidopsis lyrata subsp.
lyrata]
gi|297324932|gb|EFH55352.1| hypothetical protein ARALYDRAFT_901658 [Arabidopsis lyrata subsp.
lyrata]
Length = 345
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 96/195 (49%), Gaps = 25/195 (12%)
Query: 375 PESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQA 434
P IT EERF +K+G + ++ +GRRGVF G + NMHLHWK E VK+I Q
Sbjct: 158 PHEITGEERFYLKKMGQKRSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICNNSKPGQV 217
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARS---- 490
++ A L SGGV V+ I ++ YRGK Y +P + P + L+K++A +S
Sbjct: 218 QQYAEELAKLSGGVPVN---IIGDDTIIFYRGKGYVQPQVMSPIDTLSKKRAYEKSKYEQ 274
Query: 491 ----------IELQRQEALLKHVATLESNAGRLRSEI--EQMNSVKGTGDEQLY-DKLDS 537
I + E +HVA + R I + + + D +LY LD+
Sbjct: 275 SLESVRHSIAIAEKELELYYRHVALYDDPNNRNPLSILDDSPSESRQHHDNELYLSCLDT 334
Query: 538 AYATEDDDSEDEGDE 552
D +SEDEG+E
Sbjct: 335 -----DANSEDEGEE 344
>gi|15226402|ref|NP_180415.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
gi|4510396|gb|AAD21483.1| hypothetical protein [Arabidopsis thaliana]
gi|44917583|gb|AAS49116.1| At2g28480 [Arabidopsis thaliana]
gi|110741747|dbj|BAE98819.1| hypothetical protein [Arabidopsis thaliana]
gi|330253035|gb|AEC08129.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
Length = 372
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 74/133 (55%), Gaps = 3/133 (2%)
Query: 375 PESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQA 434
P IT EERF +K+G + ++ +GRRGVF G + NMHLHWK E VK+I Q
Sbjct: 161 PHEITGEERFYLKKMGQKRSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICNNSKPGQV 220
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQ 494
++ A L SGGV V+ I ++ YRGK Y +P + P + L+K++A +S Q
Sbjct: 221 QQYAEELAKLSGGVPVN---IIGDDTIIFYRGKGYVQPQVMSPIDTLSKKRAYEKSKYEQ 277
Query: 495 RQEALLKHVATLE 507
E++ +A E
Sbjct: 278 SLESVRHFIAIAE 290
>gi|226509977|ref|NP_001151028.1| CFM6 [Zea mays]
gi|195643764|gb|ACG41350.1| CFM6 [Zea mays]
gi|238011754|gb|ACR36912.1| unknown [Zea mays]
Length = 394
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 128/278 (46%), Gaps = 30/278 (10%)
Query: 339 QKLEKKLARAERKLLRAERALSKVEESLKPAE------RQADPESITDEERFMFRKLGLR 392
QK AR + K+ +A+ +++ E LK E A + ++ EERF +K+ +
Sbjct: 128 QKFPTPEARLKYKIEKAKLKEARLVEKLKKYEIAKAQGPMAKVDDLSGEERFYLKKVSQK 187
Query: 393 MKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSV 452
++ +GRRGVF G + NMHLHWK E VK+I K Q ++ A + SGG+ V+V
Sbjct: 188 KSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYANEIARLSGGIPVNV 247
Query: 453 ---DKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESN 509
D I V YRGK Y +P + P + L+K+KAL +S Q E + + +A E
Sbjct: 248 IGDDTI------VFYRGKSYVQPEVMSPVDTLSKKKALEKSKYEQSLETVRRFIAISEKE 301
Query: 510 AGRLRSEIEQMN-SVKGTGDEQLYDKLDSAYATEDDDSEDEGDEAYL------EMYAGGN 562
+ S D D +++ + +G E +L +++ G
Sbjct: 302 LELYYRHVALYGISQSQKSDLVCGDDREASLLKMEGLDRGKGQEPHLATNHFSDLHIGDV 361
Query: 563 DNEDEIDNSTHNLEMESDFPYHAQDQESETELMDSESE 600
DE D+S Y A D ++ETE M S SE
Sbjct: 362 SESDEEDSSGSE--------YDADDDDNETESMASVSE 391
Score = 38.9 bits (89), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 165 LARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSER 224
L+ +E L+++++ + +GR G+ + M W+K K+ K + +
Sbjct: 173 LSGEERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICK-PCKPGQIQE 231
Query: 225 MVEDIKKLTGGTLLSR-NKDFLVFYRGKNFLSPDV---TEALQERERLAKS 271
+I +L+GG ++ D +VFYRGK+++ P+V + L +++ L KS
Sbjct: 232 YANEIARLSGGIPVNVIGDDTIVFYRGKSYVQPEVMSPVDTLSKKKALEKS 282
>gi|359478175|ref|XP_002266278.2| PREDICTED: uncharacterized protein LOC100250974 [Vitis vinifera]
Length = 711
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 76/133 (57%), Gaps = 3/133 (2%)
Query: 375 PESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQA 434
P ++T EERF +K+ + ++ +GRRGVF G + NMH+HWK E VK+I K Q
Sbjct: 451 PVNLTGEERFYMKKMAQKRSNYVPVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQV 510
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQ 494
+ A + SGG + +I ++ YRGK+Y +P + P + L+K++AL +S Q
Sbjct: 511 HEYANEIARLSGGTPI---QIIGDDTIIFYRGKNYVQPEVMSPIDTLSKKRALEKSKYEQ 567
Query: 495 RQEALLKHVATLE 507
E++ + +A E
Sbjct: 568 SLESVRRFIAIAE 580
Score = 42.7 bits (99), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 7/117 (5%)
Query: 147 VPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKS 206
VP Q P V P L +E ++++A+ + +GR G+ + M W+K
Sbjct: 441 VPKLQGPI-VQPV----NLTGEERFYMKKMAQKRSNYVPVGRRGVFGGVILNMHMHWKKH 495
Query: 207 SIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSR-NKDFLVFYRGKNFLSPDVTEAL 262
K+ K E +I +L+GGT + D ++FYRGKN++ P+V +
Sbjct: 496 ETVKVICKPCKPGQVHE-YANEIARLSGGTPIQIIGDDTIIFYRGKNYVQPEVMSPI 551
>gi|168020023|ref|XP_001762543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686276|gb|EDQ72666.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 548
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 146/309 (47%), Gaps = 35/309 (11%)
Query: 333 RHAYLVQKLEKKLARAERKLL-RAERALSKV---EESLKPAERQADPES------ITDEE 382
R L +KL K E+ L R E+ K+ EE LK E PE +T E+
Sbjct: 170 RQIRLAKKLRKASMTPEQTFLWRIEKCKKKIALHEEQLKKFELPPLPEPDPDPEVLTPEQ 229
Query: 383 RFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALE 442
+ +KLG + K ++ +GRRG++ GT++NMH+HWK E V+I ++ K++ LE
Sbjct: 230 LYALKKLGYKNKNYVPVGRRGIYGGTIQNMHMHWKKHETVRIDCDNFPKEKIKEMGETLE 289
Query: 443 AESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRP---KNLLTKRKALARSIELQRQEAL 499
SGG+++ I +G ++++RG++Y+RP P KN KRKAL +S Q +L
Sbjct: 290 RLSGGIVID---IHQGTTIIMWRGRNYKRPKVDIPIIFKN-FNKRKALIKSKHEQSIGSL 345
Query: 500 LKHVATLESNAGRLRSEIEQMNSVKG------TGDEQLYDKLDSAYATEDDDSEDEGDEA 553
+ E + LR+++ + + + G + DDDS++ D +
Sbjct: 346 KDQIVKWEKDLRELRADMAREEAARARWLEENPGMAPPEPPAPVSVEQSDDDSDEVTDIS 405
Query: 554 YLEMYAGGNDNEDEIDNSTHNLEMESDFPYHAQDQESETELMDSESEAYTVHSTYCASTD 613
+D+ E+D+ + +SD+ Y +S+ +L D + ST S
Sbjct: 406 --------DDDITEVDDLGPEYDDDSDWEY----PDSDVDLPDRSVPSNDNASTSNVSDS 453
Query: 614 IVEEDNNFY 622
E ++N Y
Sbjct: 454 NDEWESNLY 462
>gi|57900097|dbj|BAD88159.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900277|dbj|BAD87110.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|215695021|dbj|BAG90212.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 417
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 15/178 (8%)
Query: 339 QKLEKKLARAERKLLRAERALSKVEESLK---------PAERQADPESITDEERFMFRKL 389
QK AR + K+ +A+ + + E LK P +Q D + EERF +K+
Sbjct: 127 QKFPTPEARLKYKIEKAKLKEAMLVEKLKKYEIAKAQGPMAKQDD---LDGEERFYLKKV 183
Query: 390 GLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVL 449
+ ++ +GRRGVF G + NMHLHWK E VK+I K Q ++ A + SGG
Sbjct: 184 SQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSGG-- 241
Query: 450 VSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLE 507
+ ++ I +V YRGK+Y +P + P + L+K+KAL +S Q E + + +A E
Sbjct: 242 IPINTIGND-TIVFYRGKNYVQPDVMSPVDTLSKKKALEKSKYEQSLETVRRFIAVSE 298
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 158 PYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGV 217
P + L +E L+++++ + +GR G+ + M W+K K+ K
Sbjct: 165 PMAKQDDLDGEERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICK-PC 223
Query: 218 QLTTSERMVEDIKKLTGGTLLSR-NKDFLVFYRGKNFLSPDV---TEALQERERLAKS 271
+ + +I +L+GG ++ D +VFYRGKN++ PDV + L +++ L KS
Sbjct: 224 KPGQIQEYASEIARLSGGIPINTIGNDTIVFYRGKNYVQPDVMSPVDTLSKKKALEKS 281
>gi|57900098|dbj|BAD88160.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900278|dbj|BAD87111.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
Length = 394
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 15/178 (8%)
Query: 339 QKLEKKLARAERKLLRAERALSKVEESLK---------PAERQADPESITDEERFMFRKL 389
QK AR + K+ +A+ + + E LK P +Q D + EERF +K+
Sbjct: 127 QKFPTPEARLKYKIEKAKLKEAMLVEKLKKYEIAKAQGPMAKQDD---LDGEERFYLKKV 183
Query: 390 GLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVL 449
+ ++ +GRRGVF G + NMHLHWK E VK+I K Q ++ A + SGG
Sbjct: 184 SQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSGG-- 241
Query: 450 VSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLE 507
+ ++ I +V YRGK+Y +P + P + L+K+KAL +S Q E + + +A E
Sbjct: 242 IPINTIGND-TIVFYRGKNYVQPDVMSPVDTLSKKKALEKSKYEQSLETVRRFIAVSE 298
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 158 PYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGV 217
P + L +E L+++++ + +GR G+ + M W+K K+ K
Sbjct: 165 PMAKQDDLDGEERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICK-PC 223
Query: 218 QLTTSERMVEDIKKLTGGTLLSR-NKDFLVFYRGKNFLSPDV---TEALQERERLAKS 271
+ + +I +L+GG ++ D +VFYRGKN++ PDV + L +++ L KS
Sbjct: 224 KPGQIQEYASEIARLSGGIPINTIGNDTIVFYRGKNYVQPDVMSPVDTLSKKKALEKS 281
>gi|115442347|ref|NP_001045453.1| Os01g0958400 [Oryza sativa Japonica Group]
gi|57900096|dbj|BAD88158.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900276|dbj|BAD87109.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|113534984|dbj|BAF07367.1| Os01g0958400 [Oryza sativa Japonica Group]
gi|215768161|dbj|BAH00390.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189771|gb|EEC72198.1| hypothetical protein OsI_05277 [Oryza sativa Indica Group]
gi|222619906|gb|EEE56038.1| hypothetical protein OsJ_04827 [Oryza sativa Japonica Group]
Length = 415
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 15/178 (8%)
Query: 339 QKLEKKLARAERKLLRAERALSKVEESLK---------PAERQADPESITDEERFMFRKL 389
QK AR + K+ +A+ + + E LK P +Q D + EERF +K+
Sbjct: 127 QKFPTPEARLKYKIEKAKLKEAMLVEKLKKYEIAKAQGPMAKQDD---LDGEERFYLKKV 183
Query: 390 GLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVL 449
+ ++ +GRRGVF G + NMHLHWK E VK+I K Q ++ A + SGG
Sbjct: 184 SQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSGG-- 241
Query: 450 VSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLE 507
+ ++ I +V YRGK+Y +P + P + L+K+KAL +S Q E + + +A E
Sbjct: 242 IPINTIGND-TIVFYRGKNYVQPDVMSPVDTLSKKKALEKSKYEQSLETVRRFIAVSE 298
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 158 PYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGV 217
P + L +E L+++++ + +GR G+ + M W+K K+ K
Sbjct: 165 PMAKQDDLDGEERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICK-PC 223
Query: 218 QLTTSERMVEDIKKLTGGTLLSR-NKDFLVFYRGKNFLSPDV---TEALQERERLAKS 271
+ + +I +L+GG ++ D +VFYRGKN++ PDV + L +++ L KS
Sbjct: 224 KPGQIQEYASEIARLSGGIPINTIGNDTIVFYRGKNYVQPDVMSPVDTLSKKKALEKS 281
>gi|297743805|emb|CBI36688.3| unnamed protein product [Vitis vinifera]
Length = 332
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 76/133 (57%), Gaps = 3/133 (2%)
Query: 375 PESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQA 434
P ++T EERF +K+ + ++ +GRRGVF G + NMH+HWK E VK+I K Q
Sbjct: 72 PVNLTGEERFYMKKMAQKRSNYVPVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQV 131
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQ 494
+ A + SGG + +I ++ YRGK+Y +P + P + L+K++AL +S Q
Sbjct: 132 HEYANEIARLSGGTPI---QIIGDDTIIFYRGKNYVQPEVMSPIDTLSKKRALEKSKYEQ 188
Query: 495 RQEALLKHVATLE 507
E++ + +A E
Sbjct: 189 SLESVRRFIAIAE 201
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 10/129 (7%)
Query: 147 VPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKS 206
VP Q P V P L +E ++++A+ + +GR G+ + M W+K
Sbjct: 62 VPKLQGPI-VQPV----NLTGEERFYMKKMAQKRSNYVPVGRRGVFGGVILNMHMHWKKH 116
Query: 207 SIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSR-NKDFLVFYRGKNFLSPDV---TEAL 262
K+ K E +I +L+GGT + D ++FYRGKN++ P+V + L
Sbjct: 117 ETVKVICKPCKPGQVHE-YANEIARLSGGTPIQIIGDDTIIFYRGKNYVQPEVMSPIDTL 175
Query: 263 QERERLAKS 271
++ L KS
Sbjct: 176 SKKRALEKS 184
>gi|147820521|emb|CAN67658.1| hypothetical protein VITISV_012474 [Vitis vinifera]
Length = 375
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 76/133 (57%), Gaps = 3/133 (2%)
Query: 375 PESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQA 434
P ++T EERF +K+ + ++ +GRRGVF G + NMH+HWK E VK+I K Q
Sbjct: 115 PVNLTGEERFYMKKMAQKRSNYVPVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQV 174
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQ 494
+ A + SGG + +I ++ YRGK+Y +P + P + L+K++AL +S Q
Sbjct: 175 HEYANEIARLSGGTPI---QIIGDDTIIFYRGKNYVQPEXMSPIDTLSKKRALEKSKYEQ 231
Query: 495 RQEALLKHVATLE 507
E++ + +A E
Sbjct: 232 SLESVRRFIAIAE 244
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 10/129 (7%)
Query: 147 VPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKS 206
VP Q P V P L +E ++++A+ + +GR G+ + M W+K
Sbjct: 105 VPKLQGPI-VQPV----NLTGEERFYMKKMAQKRSNYVPVGRRGVFGGVILNMHMHWKKH 159
Query: 207 SIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSR-NKDFLVFYRGKNFLSPDV---TEAL 262
K+ K E +I +L+GGT + D ++FYRGKN++ P+ + L
Sbjct: 160 ETVKVICKPCKPGQVHE-YANEIARLSGGTPIQIIGDDTIIFYRGKNYVQPEXMSPIDTL 218
Query: 263 QERERLAKS 271
++ L KS
Sbjct: 219 SKKRALEKS 227
>gi|224128874|ref|XP_002328988.1| predicted protein [Populus trichocarpa]
gi|222839222|gb|EEE77573.1| predicted protein [Populus trichocarpa]
Length = 342
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 87/167 (52%), Gaps = 8/167 (4%)
Query: 340 KLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLL 399
++ KL +A+RK L K+E P E DPE +T+EE+ ++ G + K ++ +
Sbjct: 142 RIRYKLEKAKRKEAWLIEKLRKLEVPKTPGE-AYDPEILTEEEKHYLKRTGEKKKNYVPV 200
Query: 400 GRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGY 459
GRRGVF G V NMHLHWK E VK+ K Q + A L S G+ + I
Sbjct: 201 GRRGVFGGVVLNMHLHWKKHETVKVTCKPCKPGQIDEYAEELARLSKGIAID---IRPDN 257
Query: 460 AMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATL 506
++ YRGK+Y +P + P + L+K KAL E R E L+H +
Sbjct: 258 TIIFYRGKNYVQPKIMSPPDTLSKDKAL----EKYRYEQSLEHTSQF 300
>gi|359488800|ref|XP_002272412.2| PREDICTED: uncharacterized protein LOC100254349 [Vitis vinifera]
Length = 666
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 104/172 (60%), Gaps = 19/172 (11%)
Query: 330 EVRRHAYLVQKLEKKLARAERKLL----RAERALSKVEESLK-------PAERQADPESI 378
EVRR QKL KKL E +L+ RA++ ++ + + LK PA R DPE +
Sbjct: 80 EVRR----AQKLRKKLMTDEERLIYNLRRAKKKVALLLQKLKKYELPELPAPRH-DPELL 134
Query: 379 TDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIA 438
T E+ ++K+G R K ++ +G RGVF G V+NMHLHWK+ E V++ ++ K++A
Sbjct: 135 TAEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMA 194
Query: 439 LALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARS 490
L SGG++++V + ++++RG++Y++P L P N LTKRKAL ++
Sbjct: 195 TMLARLSGGIVINVHDVK---TIIMFRGRNYRQPKNLIPINTLTKRKALFKA 243
>gi|224095670|ref|XP_002310431.1| predicted protein [Populus trichocarpa]
gi|222853334|gb|EEE90881.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 10/176 (5%)
Query: 339 QKLEKKLARAERKLLRAERALSKVEESLKPAE------RQADPESITDEERFMFRKLGLR 392
QK R + KL RA +K+ E LK E + P +T EERF +K+ +
Sbjct: 68 QKFANVEERIKTKLERARIKEAKLVERLKRYEVPKMQGPEVKPHELTGEERFFMKKMAQK 127
Query: 393 MKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTF-DQAKKIALALEAESGGVLVS 451
++ +GRRGVF G + NMH+HWK E VK+I Q ++ A + SGG+ +
Sbjct: 128 KSNYVPIGRRGVFGGVILNMHMHWKKHETVKVICNSSCKPGQVQEFAQEIARLSGGIPI- 186
Query: 452 VDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLE 507
+I ++ YRGK+Y +P + P + L+K+KAL +S Q E + +A E
Sbjct: 187 --QIIGDDTVIFYRGKNYVQPKVMSPVDTLSKKKALEKSKYEQSLETVRHFIAIAE 240
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Query: 147 VPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKS 206
VP Q P V P+ L +E ++++A+ + +GR G+ + M W+K
Sbjct: 100 VPKMQGP-EVKPH----ELTGEERFFMKKMAQKKSNYVPIGRRGVFGGVILNMHMHWKKH 154
Query: 207 SIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSR-NKDFLVFYRGKNFLSPDV---TEAL 262
K+ + + ++I +L+GG + D ++FYRGKN++ P V + L
Sbjct: 155 ETVKVICNSSCKPGQVQEFAQEIARLSGGIPIQIIGDDTVIFYRGKNYVQPKVMSPVDTL 214
Query: 263 QERERLAKS 271
+++ L KS
Sbjct: 215 SKKKALEKS 223
>gi|296087592|emb|CBI34848.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 102/170 (60%), Gaps = 19/170 (11%)
Query: 330 EVRRHAYLVQKLEKKLARAERKLL----RAERALSKVEESLK-------PAERQADPESI 378
EVRR QKL KKL E +L+ RA++ ++ + + LK PA R DPE +
Sbjct: 95 EVRR----AQKLRKKLMTDEERLIYNLRRAKKKVALLLQKLKKYELPELPAPRH-DPELL 149
Query: 379 TDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIA 438
T E+ ++K+G R K ++ +G RGVF G V+NMHLHWK+ E V++ ++ K++A
Sbjct: 150 TAEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMA 209
Query: 439 LALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALA 488
L SGG++++V + ++++RG++Y++P L P N LTKRKA A
Sbjct: 210 TMLARLSGGIVINVHDVK---TIIMFRGRNYRQPKNLIPINTLTKRKATA 256
>gi|357521229|ref|XP_003630903.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355524925|gb|AET05379.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 318
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 78/147 (53%), Gaps = 4/147 (2%)
Query: 340 KLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLL 399
++ KL +A+RK L K + P E DPE +T+EER ++ G + K ++ +
Sbjct: 150 RIRYKLEKAKRKETWLIEKLRKFDVPKLPTE-TFDPEILTEEERHYLKRTGEKKKHYVPV 208
Query: 400 GRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGY 459
GRRGVF V NMHLHWK E VK+I K QA + L S G+++ I
Sbjct: 209 GRRGVFGEVVLNMHLHWKKHETVKVICKPCKPGQAHEYTEELTRPSKGIVID---IKPNN 265
Query: 460 AMVVYRGKDYQRPSTLRPKNLLTKRKA 486
++ YRG++Y +P + P + L+K K
Sbjct: 266 IIIFYRGRNYVQPKVMSPPDTLSKAKV 292
>gi|356513969|ref|XP_003525680.1| PREDICTED: uncharacterized protein LOC100780131 [Glycine max]
Length = 653
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 102/175 (58%), Gaps = 4/175 (2%)
Query: 339 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 398
++L L RA++K+ + L K E P R DPE +T E+ ++K+G R K ++
Sbjct: 113 ERLIYNLKRAKKKVALLLQKLKKYELPELPPPRH-DPELLTPEQLQAYKKIGFRNKNYVP 171
Query: 399 LGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKG 458
+G RGVF G V+NMHLHWK+ E V++ ++ K++A L SGG++++V +
Sbjct: 172 VGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMASMLARLSGGIVINVHNVK-- 229
Query: 459 YAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRL 513
++++RG++Y++P L P N LTKRKAL ++ Q E+ ++ +E R+
Sbjct: 230 -TIIMFRGRNYRQPKNLIPINTLTKRKALFKARFEQALESQKLNIKKIEQQLRRM 283
>gi|357134703|ref|XP_003568955.1| PREDICTED: uncharacterized protein LOC100832553 [Brachypodium
distachyon]
Length = 562
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 126/237 (53%), Gaps = 22/237 (9%)
Query: 284 SAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREA-----EVRRHAYLV 338
S ++P++E G G + + G+ + ++ + RE E+RR L
Sbjct: 49 SGALVPAVE----GGGGGVCRRLMSTTK--GRSMRSKVEKRMARETGRTQRELRRAVKLR 102
Query: 339 QKLEKKLARAERKLLRAERALSKVEESLK-------PAERQADPESITDEERFMFRKLGL 391
+KL R + RA++ ++ + + LK PA R DPE +T E+ ++K+G
Sbjct: 103 KKLMTDDERLIHSMRRAKKKVALLLQKLKKYELPDLPAPRH-DPELLTAEQLQAYKKIGF 161
Query: 392 RMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVS 451
R + ++ +G RGVF G V+NMH+HWK+ E V++ ++ K++A L SGG++V+
Sbjct: 162 RNRNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVVN 221
Query: 452 VDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLES 508
+ ++++RG++Y++P L P N LTKRKAL ++ Q E+ ++ +E+
Sbjct: 222 IHNTK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARYEQALESQKLNIKKIET 275
>gi|356573355|ref|XP_003554827.1| PREDICTED: uncharacterized protein LOC100782246 [Glycine max]
Length = 653
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 102/175 (58%), Gaps = 4/175 (2%)
Query: 339 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 398
++L L RA++K+ + L K E P R DPE +T E+ ++K+G R K ++
Sbjct: 113 ERLIYNLKRAKKKVALLLQKLKKYELPELPHPRH-DPELLTPEQLQAYKKIGFRNKNYVP 171
Query: 399 LGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKG 458
+G RGVF G V+NMHLHWK+ E V++ ++ K++A L SGG++++V +
Sbjct: 172 VGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMASMLARLSGGIVINVHNVK-- 229
Query: 459 YAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRL 513
++++RG++Y++P L P N LTKRKAL ++ Q E+ ++ +E R+
Sbjct: 230 -TIIMFRGRNYRQPKNLIPINTLTKRKALFKARFEQALESQKLNIKKIEQQLRRM 283
>gi|449450187|ref|XP_004142845.1| PREDICTED: uncharacterized protein LOC101215761 [Cucumis sativus]
Length = 619
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 93/152 (61%), Gaps = 4/152 (2%)
Query: 339 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 398
++L L RA++K+ + L K E P R DPE +T E+ ++K+G R + ++
Sbjct: 111 ERLLYNLKRAKKKVALLLQQLKKYELPELPPPRH-DPELLTPEQLQAYKKIGFRNRNYVP 169
Query: 399 LGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKG 458
+G RGVF G V+NMHLHWK+ E V++ ++ K++A L SGG++V++ +
Sbjct: 170 VGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVVNIHDVK-- 227
Query: 459 YAMVVYRGKDYQRPSTLRPKNLLTKRKALARS 490
++++RG++Y++P L P N LTKRKAL ++
Sbjct: 228 -TIIMFRGRNYRQPKNLIPINTLTKRKALFKA 258
>gi|449483922|ref|XP_004156733.1| PREDICTED: uncharacterized protein LOC101226279 [Cucumis sativus]
Length = 619
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 93/152 (61%), Gaps = 4/152 (2%)
Query: 339 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 398
++L L RA++K+ + L K E P R DPE +T E+ ++K+G R + ++
Sbjct: 111 ERLLYNLKRAKKKVALLLQQLKKYELPELPPPRH-DPELLTPEQLQAYKKIGFRNRNYVP 169
Query: 399 LGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKG 458
+G RGVF G V+NMHLHWK+ E V++ ++ K++A L SGG++V++ +
Sbjct: 170 VGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVVNIHDVK-- 227
Query: 459 YAMVVYRGKDYQRPSTLRPKNLLTKRKALARS 490
++++RG++Y++P L P N LTKRKAL ++
Sbjct: 228 -TIIMFRGRNYRQPKNLIPINTLTKRKALFKA 258
>gi|413950005|gb|AFW82654.1| hypothetical protein ZEAMMB73_283519 [Zea mays]
Length = 645
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 122/227 (53%), Gaps = 26/227 (11%)
Query: 301 GTLKETLDANSRW-------GKRLDDSHKENLVREA-----EVRRHAYLVQKL----EK- 343
G L A SRW G+ + ++ + RE E+RR L +KL EK
Sbjct: 38 GLLAVGAGAYSRWRRAMSTKGRSMRSKVEKRMARETGRTQRELRRAVKLRKKLMTEDEKL 97
Query: 344 --KLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGR 401
L RA++K+ + L K E PA R DPE +T E+ ++K+G R + ++ +G
Sbjct: 98 IYNLRRAKKKVALLLQKLKKYELPDLPAPRH-DPELLTAEQLQAYKKIGFRNRNYVPVGV 156
Query: 402 RGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAM 461
RGVF G V+NMH+HWK+ E V++ ++ K++A L SGG+++++ +
Sbjct: 157 RGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNTK---TI 213
Query: 462 VVYRGKDYQRPSTLRPKNLLTKRKALARS---IELQRQEALLKHVAT 505
+++RG++Y++P L P N LTKRKAL ++ L+ Q+ +K + T
Sbjct: 214 IMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIET 260
>gi|242086871|ref|XP_002439268.1| hypothetical protein SORBIDRAFT_09g003490 [Sorghum bicolor]
gi|241944553|gb|EES17698.1| hypothetical protein SORBIDRAFT_09g003490 [Sorghum bicolor]
Length = 652
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 108/186 (58%), Gaps = 14/186 (7%)
Query: 330 EVRRHAYLVQKL----EK---KLARAERKLLRAERALSKVEESLKPAERQADPESITDEE 382
E+RR L +KL EK L RA++K+ + L K E PA R DPE +T E+
Sbjct: 80 ELRRAVKLRKKLMTEDEKLIYNLRRAKKKVALLLQKLKKYELPDLPAPRH-DPELLTAEQ 138
Query: 383 RFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALE 442
++K+G R + ++ +G RGVF G V+NMH+HWK+ E V++ ++ K++A L
Sbjct: 139 LQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMAAMLT 198
Query: 443 AESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARS---IELQRQEAL 499
SGG+++++ ++++RG++Y++P L P N LTKRKAL ++ L+ Q+
Sbjct: 199 RLSGGIVINIHNTK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLN 255
Query: 500 LKHVAT 505
+K + T
Sbjct: 256 IKKIET 261
>gi|51038196|gb|AAT93999.1| unknow protein [Oryza sativa Japonica Group]
gi|222630175|gb|EEE62307.1| hypothetical protein OsJ_17096 [Oryza sativa Japonica Group]
Length = 560
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 107/188 (56%), Gaps = 14/188 (7%)
Query: 328 EAEVRRHAYLVQKLEK-------KLARAERKLLRAERALSKVEESLKPAERQADPESITD 380
+ E+RR L +KL L RA++K+ + L K E PA R DPE +T
Sbjct: 88 QRELRRAVKLRKKLMTDDERLIYSLRRAKKKVALLLQKLKKYELPDLPAPRH-DPELLTA 146
Query: 381 EERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALA 440
E+ ++K+G R + ++ +G RGVF G V+NMH+HWK+ E V++ ++ K++A
Sbjct: 147 EQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMAAM 206
Query: 441 LEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARS---IELQRQE 497
L SGG+++++ ++++RG++Y++P L P N LTKRKAL ++ L+ Q+
Sbjct: 207 LTRLSGGIVINIHNTK---TIIMFRGRNYRQPKNLIPLNTLTKRKALFKARFEQALESQK 263
Query: 498 ALLKHVAT 505
+K + T
Sbjct: 264 LNIKKIET 271
>gi|125550822|gb|EAY96531.1| hypothetical protein OsI_18436 [Oryza sativa Indica Group]
Length = 560
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 108/188 (57%), Gaps = 14/188 (7%)
Query: 328 EAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLK-------PAERQADPESITD 380
+ E+RR L +KL R L RA++ ++ + + LK PA R DPE +T
Sbjct: 88 QRELRRAVKLRKKLMTDDERLIYSLRRAKKKVALLLQKLKKYELPDLPAPRH-DPELLTA 146
Query: 381 EERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALA 440
E+ ++K+G R + ++ +G RGVF G V+NMH+HWK+ E V++ ++ K++A
Sbjct: 147 EQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMAAM 206
Query: 441 LEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARS---IELQRQE 497
L SGG+++++ ++++RG++Y++P L P N LTKRKAL ++ L+ Q+
Sbjct: 207 LTRLSGGIVINIHNTK---TIIMFRGRNYRQPKNLIPLNTLTKRKALFKARFEQALESQK 263
Query: 498 ALLKHVAT 505
+K + T
Sbjct: 264 LNIKKIET 271
>gi|255560940|ref|XP_002521483.1| conserved hypothetical protein [Ricinus communis]
gi|223539382|gb|EEF40973.1| conserved hypothetical protein [Ricinus communis]
Length = 745
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 100/175 (57%), Gaps = 4/175 (2%)
Query: 339 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 398
++L L RA++K+ + L K E P DPE T E+ ++K+G R + ++
Sbjct: 114 ERLIYNLKRAKKKVALLLQKLKKYELPELPPPLH-DPELFTSEQLQAYKKIGFRNRNYVP 172
Query: 399 LGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKG 458
+G RGVF G V+NMHLHWK+ E V++ ++ K++A L SGG+++++ +
Sbjct: 173 VGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINIHNVK-- 230
Query: 459 YAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRL 513
++++RG++Y++P L P N LTKRKAL ++ Q E+ ++ +E R+
Sbjct: 231 -TIIMFRGRNYRQPKNLIPINTLTKRKALFKARFEQALESQKLNIKKIEQQLRRM 284
>gi|413917671|gb|AFW57603.1| hypothetical protein ZEAMMB73_144408 [Zea mays]
Length = 520
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 107/186 (57%), Gaps = 14/186 (7%)
Query: 330 EVRRHAYLVQKL----EK---KLARAERKLLRAERALSKVEESLKPAERQADPESITDEE 382
E+RR L +KL EK L RA++K+ + L K E A R DPE +T E+
Sbjct: 82 ELRRAVKLRKKLMTEDEKFIYNLRRAKKKVALLLQKLKKYELPDLQAPRH-DPELLTAEQ 140
Query: 383 RFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALE 442
++K+G R + ++ +G RGVF G V+NMH+HWK+ E V++ ++ K++A L
Sbjct: 141 LQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMAAMLT 200
Query: 443 AESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARS---IELQRQEAL 499
SGG+++++ ++++RG++Y++P L P N LTKRKAL ++ L+ Q+
Sbjct: 201 RLSGGIVINIHNTK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLN 257
Query: 500 LKHVAT 505
+K + T
Sbjct: 258 IKKIET 263
>gi|15232195|ref|NP_189392.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
gi|11994182|dbj|BAB01285.1| unnamed protein product [Arabidopsis thaliana]
gi|332643815|gb|AEE77336.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
Length = 491
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 374 DPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQ 433
DPE T E+ F+K+G + K ++ +G RGVF G V+NMH+HWK+ E V++ ++
Sbjct: 88 DPELFTSEQVQAFKKIGFKNKNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEK 147
Query: 434 AKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKAL 487
K++A + SGGV++++ + ++++RG++Y++P L P N LTKRKAL
Sbjct: 148 IKEMASMIARLSGGVVINIHNVK---TIIMFRGRNYRQPKNLIPVNTLTKRKAL 198
>gi|297818350|ref|XP_002877058.1| hypothetical protein ARALYDRAFT_484545 [Arabidopsis lyrata subsp.
lyrata]
gi|297322896|gb|EFH53317.1| hypothetical protein ARALYDRAFT_484545 [Arabidopsis lyrata subsp.
lyrata]
Length = 488
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 76/117 (64%), Gaps = 3/117 (2%)
Query: 374 DPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQ 433
DPE T E+ F+K+G + K ++ +G RGVF G V+NMH+HWK+ E V++ ++
Sbjct: 88 DPELFTSEQVQAFKKIGFKNKNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEK 147
Query: 434 AKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARS 490
K++A + SGGV++++ + ++++RG++Y++P L P N LTKRKAL ++
Sbjct: 148 IKEMASMIARLSGGVVINIHNVK---TIIMFRGRNYRQPKNLIPVNTLTKRKALFKA 201
>gi|224055583|ref|XP_002298551.1| predicted protein [Populus trichocarpa]
gi|222845809|gb|EEE83356.1| predicted protein [Populus trichocarpa]
Length = 496
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 86/140 (61%), Gaps = 3/140 (2%)
Query: 374 DPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQ 433
DPE +T E+ ++K+G R K ++ +G RGVF G V+NMH+HWK+ E V++ ++
Sbjct: 77 DPELLTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHMHWKFHETVQVSCDNFPKEK 136
Query: 434 AKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIEL 493
K++A + SGG++V+V + ++++RG++Y++P L P N LTKRKAL ++
Sbjct: 137 IKEMATMIARLSGGIVVNVHNVK---TIIMFRGRNYRQPKDLIPLNTLTKRKALFKARFE 193
Query: 494 QRQEALLKHVATLESNAGRL 513
Q E+ ++ +E R+
Sbjct: 194 QALESQKLNIKQIEQQLRRM 213
>gi|302766798|ref|XP_002966819.1| hypothetical protein SELMODRAFT_408011 [Selaginella moellendorffii]
gi|300164810|gb|EFJ31418.1| hypothetical protein SELMODRAFT_408011 [Selaginella moellendorffii]
Length = 672
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 62/106 (58%), Gaps = 4/106 (3%)
Query: 376 ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI-IVKVKTFDQA 434
E +++ E + ++G + + F +G+RG++ G + N+H +WK+ E V+I + + ++
Sbjct: 123 EPLSEGEAAHYARIGNKNQNFASVGKRGIYGGVIHNIHTNWKFHETVRIKCPRHNSMEET 182
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNL 480
++I L SGG+++ V + ++++RGK+YQ P L P L
Sbjct: 183 RRIGAELARLSGGIVLDV---LEDRTVIMFRGKNYQTPEELYPPTL 225
>gi|297604874|ref|NP_001056251.2| Os05g0551900 [Oryza sativa Japonica Group]
gi|255676553|dbj|BAF18165.2| Os05g0551900, partial [Oryza sativa Japonica Group]
Length = 73
Score = 58.5 bits (140), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/47 (57%), Positives = 36/47 (76%)
Query: 187 GRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLT 233
GR+R QGLA A++KLWEKS + KIA+KRG+Q T ++ M E+IK T
Sbjct: 1 GRNRNHQGLAAAIVKLWEKSLVVKIAVKRGIQNTNNKLMSEEIKVWT 47
>gi|242082009|ref|XP_002445773.1| hypothetical protein SORBIDRAFT_07g025550 [Sorghum bicolor]
gi|241942123|gb|EES15268.1| hypothetical protein SORBIDRAFT_07g025550 [Sorghum bicolor]
Length = 674
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 376 ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQA 434
E +T EE F K L+ K L +GR G+ +EN+H HWK + + KI K V T D
Sbjct: 183 EPLTKEEVFELVKGSLKTKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDM- 241
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDY 469
I LE + GG ++ +G + ++RG++Y
Sbjct: 242 DNICQQLEEKVGGKVIH----RQGGVIFLFRGRNY 272
>gi|302759655|ref|XP_002963250.1| hypothetical protein SELMODRAFT_404989 [Selaginella moellendorffii]
gi|300168518|gb|EFJ35121.1| hypothetical protein SELMODRAFT_404989 [Selaginella moellendorffii]
Length = 274
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 93/180 (51%), Gaps = 10/180 (5%)
Query: 374 DPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQ 433
DPE ++ E ++ + FL +G+RGV++G + +++ HW E ++I + +
Sbjct: 96 DPEYLSPEFMTALKERNRCIDDFLTIGKRGVWEGFIRDIYSHWINHETLRIYCEGYPLRK 155
Query: 434 AKKIALALEAESGGVLVSVDKISKGYAMVVYRGKD----YQRPSTLRPKNLLTKRKALAR 489
+ +A + SG V+++V + + + ++YRG++ YQ PS R +N+L K KAL +
Sbjct: 156 LRPMAEKVARMSGAVVIAVTEETMSF--ILYRGRNFSHGYQPPS--RIENMLNKGKALKK 211
Query: 490 SIELQRQEALLKHVATLES--NAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATEDDDSE 547
++ L+ + L ++V L + RLR+ + E+ + L + + DDD E
Sbjct: 212 ALLLKSLQHLYRNVRELTERIHKHRLRAVYTEKQRKAIVEAEERGEDLQADASQSDDDEE 271
>gi|162462028|ref|NP_001105220.1| CRS2-associated factor 1, chloroplastic precursor [Zea mays]
gi|75147312|sp|Q84N49.1|CAF1P_MAIZE RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|30349367|gb|AAP22135.1| CRS2-associated factor 1 [Zea mays]
Length = 674
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 376 ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQA 434
E +T EE K L+ K L +GR G+ +EN+H HWK + + KI K V T D
Sbjct: 183 EPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDM- 241
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQ 470
I LE + GG ++ +G + ++RG++Y
Sbjct: 242 DNICHQLEEKVGGKVIH----RQGGVIFLFRGRNYN 273
>gi|194688996|gb|ACF78582.1| unknown [Zea mays]
gi|194700546|gb|ACF84357.1| unknown [Zea mays]
gi|223974875|gb|ACN31625.1| unknown [Zea mays]
Length = 560
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 376 ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQA 434
E +T EE K L+ K L +GR G+ +EN+H HWK + + KI K V T D
Sbjct: 69 EPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDM- 127
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQ 470
I LE + GG ++ +G + ++RG++Y
Sbjct: 128 DNICHQLEEKVGGKVIH----RQGGVIFLFRGRNYN 159
>gi|218188278|gb|EEC70705.1| hypothetical protein OsI_02075 [Oryza sativa Indica Group]
Length = 701
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 376 ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQA 434
E +T EE K L+ K L +GR G+ +EN+H HWK + + KI K V T D
Sbjct: 183 EPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDM- 241
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQ 470
+ LE + GG ++ +G + ++RG++Y
Sbjct: 242 DNVCQQLEEKVGGKVIH----HQGGVIFLFRGRNYN 273
>gi|115436730|ref|NP_001043122.1| Os01g0495900 [Oryza sativa Japonica Group]
gi|75109409|sp|Q5VMQ5.1|CAF1P_ORYSJ RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|55297418|dbj|BAD69270.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|55297612|dbj|BAD68987.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|113532653|dbj|BAF05036.1| Os01g0495900 [Oryza sativa Japonica Group]
gi|215694476|dbj|BAG89423.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222618506|gb|EEE54638.1| hypothetical protein OsJ_01906 [Oryza sativa Japonica Group]
Length = 701
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 376 ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQA 434
E +T EE K L+ K L +GR G+ +EN+H HWK + + KI K V T D
Sbjct: 183 EPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDM- 241
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQ 470
+ LE + GG ++ +G + ++RG++Y
Sbjct: 242 DNVCQQLEEKVGGKVIH----HQGGVIFLFRGRNYN 273
>gi|357520913|ref|XP_003630745.1| CRS2-associated factor [Medicago truncatula]
gi|355524767|gb|AET05221.1| CRS2-associated factor [Medicago truncatula]
Length = 698
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 376 ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI-IVKVKTFDQA 434
E +T EE + L+ L LGR G ++N+H HWK R + KI + V T D
Sbjct: 170 EPLTKEEINELVRSTLKSSRQLNLGRDGFIHNMLDNIHAHWKRRRVCKIKCIGVCTVDM- 228
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQ 470
+ LE ++GG ++ +G + ++RG++Y
Sbjct: 229 DNVCQQLEEKTGGKVI----YRRGGVIYLFRGRNYN 260
>gi|356527769|ref|XP_003532480.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine
max]
Length = 723
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 376 ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQA 434
E +T EE K ++ + L +GR G+ ++N+H HWK R KI K V T D
Sbjct: 199 EPLTQEEIRDLVKSCMKAQRQLNIGRDGLTHNMLDNIHAHWKRRRACKIRCKGVCTVDM- 257
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQ 470
+ LE +GG ++ KG + ++RG++Y
Sbjct: 258 DNVCHQLEERTGGKIIH----RKGGVLYLFRGRNYN 289
>gi|225445140|ref|XP_002280611.1| PREDICTED: CRS2-associated factor 1, chloroplastic [Vitis vinifera]
Length = 752
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 376 ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQA 434
E +T+EE + ++ K L +GR G+ ++N+H HWK R + KI K V T D
Sbjct: 242 EPLTEEEIKELVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDM- 300
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQ 470
+ LE ++GG ++ KG + ++RG++Y
Sbjct: 301 DNVRQQLEEKTGGKVI----YGKGGVLFLFRGRNYN 332
>gi|297738777|emb|CBI28022.3| unnamed protein product [Vitis vinifera]
Length = 723
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 376 ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQA 434
E +T+EE + ++ K L +GR G+ ++N+H HWK R + KI K V T D
Sbjct: 242 EPLTEEEIKELVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDM- 300
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQ 470
+ LE ++GG ++ KG + ++RG++Y
Sbjct: 301 DNVRQQLEEKTGGKVI----YGKGGVLFLFRGRNYN 332
>gi|255589857|ref|XP_002535109.1| conserved hypothetical protein [Ricinus communis]
gi|223524018|gb|EEF27274.1| conserved hypothetical protein [Ricinus communis]
Length = 748
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 376 ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI-IVKVKTFDQA 434
E +T EE + + L+ + L +GR G+ ++N+H HWK R + KI + V T D
Sbjct: 250 EPLTTEEVKILIEGCLKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCMGVCTVDM- 308
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQ 470
+ LE +GG ++ KG + ++RG++Y
Sbjct: 309 DNVCQQLEERTGGKVI----YRKGGVVYLFRGRNYN 340
>gi|224113759|ref|XP_002332503.1| predicted protein [Populus trichocarpa]
gi|222832483|gb|EEE70960.1| predicted protein [Populus trichocarpa]
Length = 699
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 391 LRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQAKKIALALEAESGGVL 449
L+ K L +GR G+ ++N+H HWK R + KI K V T D + LE +GG +
Sbjct: 261 LKAKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDM-DNVCQQLEERTGGKI 319
Query: 450 VSVDKISKGYAMVVYRGKDY 469
+ KG + ++RG++Y
Sbjct: 320 I----YRKGGVLYLFRGRNY 335
>gi|357132246|ref|XP_003567742.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like
[Brachypodium distachyon]
Length = 702
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 376 ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQA 434
E ++ EE K L+ K L +GR G+ +EN+H HWK + + KI K V T D
Sbjct: 181 EPLSKEEVAELVKGNLKAKRQLNIGRDGLTHNMLENIHAHWKRKRVCKIKCKGVCTVDM- 239
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQ 470
+ LE GG ++ +G + ++RG++Y
Sbjct: 240 DNVCQQLEERVGGKVIH----RQGGVVFLFRGRNYN 271
>gi|357443457|ref|XP_003592006.1| hypothetical protein MTR_1g097730 [Medicago truncatula]
gi|357443499|ref|XP_003592027.1| hypothetical protein MTR_1g097960 [Medicago truncatula]
gi|355481054|gb|AES62257.1| hypothetical protein MTR_1g097730 [Medicago truncatula]
gi|355481075|gb|AES62278.1| hypothetical protein MTR_1g097960 [Medicago truncatula]
Length = 56
Score = 46.6 bits (109), Expect = 0.037, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Query: 115 EVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARK 168
E+ LLD LGPR+ D + D LP +VP Y+ F++LPY V S L+RK
Sbjct: 5 ELNLLLDELGPRFKDL-------ILLDQLPAVVPRYKTSFKLLPYEVNSCLSRK 51
>gi|194697426|gb|ACF82797.1| unknown [Zea mays]
Length = 611
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 376 ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQA 434
E +T E K + L +GR G+ +E +H HW+ +E+ K+ + V T D
Sbjct: 232 EPLTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDM- 290
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKA 486
K + LE +SGG ++ G + +YRG+ Y P T RP+ L RK
Sbjct: 291 KNLCYHLEEKSGGKVIH----RVGGVVFLYRGRHYD-PKT-RPRYPLMLRKP 336
>gi|147799432|emb|CAN76866.1| hypothetical protein VITISV_012308 [Vitis vinifera]
Length = 393
Score = 46.6 bits (109), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 376 ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQA 434
E +T+EE + ++ K L +GR G+ ++N+H HWK R + KI K V T D
Sbjct: 242 EPLTEEEIKELVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDM- 300
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQ 470
+ LE ++GG ++ KG + ++RG++Y
Sbjct: 301 DNVRQQLEEKTGGKVI----YGKGGVLFLFRGRNYN 332
>gi|357144801|ref|XP_003573418.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like
[Brachypodium distachyon]
Length = 437
Score = 46.6 bits (109), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 8/98 (8%)
Query: 376 ESITDEER-FMFRKLGL-RMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI-IVKVKTFD 432
E +T ER F+ K R K + LGR G+ + ++H HWK+ E V++ + V T D
Sbjct: 156 EPLTPAERTFVVDKCQRNRTKRQVNLGRDGLTHNMLNDIHNHWKHGEAVRVKCLGVPTVD 215
Query: 433 QAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQ 470
+ + LE ++GG+++ G +++YRG+ Y
Sbjct: 216 M-QNVCHELEDKTGGLIIH----RHGGQLILYRGRHYH 248
>gi|449443167|ref|XP_004139352.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Cucumis
sativus]
gi|449521361|ref|XP_004167698.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Cucumis
sativus]
Length = 745
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 376 ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQA 434
E +T EE + + L +GR G+ +EN+H WK R + KI K V T D
Sbjct: 250 EPLTKEEIKALIRGCINSNRQLNIGRDGLTHNMLENIHALWKRRRVCKIKCKGVCTVDM- 308
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQ 470
+ LE +GG ++ S+G A+ +YRG++Y
Sbjct: 309 DNVKQQLEERTGGKII----YSRGGALYLYRGRNYN 340
>gi|356572588|ref|XP_003554450.1| PREDICTED: uncharacterized protein LOC100801865 [Glycine max]
Length = 70
Score = 45.8 bits (107), Expect = 0.059, Method: Composition-based stats.
Identities = 21/35 (60%), Positives = 27/35 (77%), Gaps = 3/35 (8%)
Query: 180 LPPHFAL---GRSRQLQGLAVAMIKLWEKSSIAKI 211
+ PHFAL GR+R+LQGLA AM+K WE S+I K+
Sbjct: 1 MKPHFALANAGRNRELQGLARAMVKRWETSAIQKL 35
>gi|326525102|dbj|BAK07821.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 443
Score = 45.4 bits (106), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 8/98 (8%)
Query: 376 ESITDEER-FMFRKLGL-RMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI-IVKVKTFD 432
E +T ER F+ K R K + LGR G+ + ++H HWK+ E V++ + V T D
Sbjct: 161 EPLTPAERSFLVEKCQKNRTKRQINLGRDGLTHNMLNDIHNHWKHGEGVRVKCLGVPTVD 220
Query: 433 QAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQ 470
+ + LE ++GG+++ G +++YRG+ Y
Sbjct: 221 M-QNVCHELEDKTGGLIIH----RHGGQLILYRGRHYH 253
>gi|242052829|ref|XP_002455560.1| hypothetical protein SORBIDRAFT_03g013160 [Sorghum bicolor]
gi|241927535|gb|EES00680.1| hypothetical protein SORBIDRAFT_03g013160 [Sorghum bicolor]
Length = 614
Score = 45.4 bits (106), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 376 ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQA 434
E +T E K + L +GR G+ +E +H HW+ +E+ K+ + V T D
Sbjct: 234 EPLTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDM- 292
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDY 469
K + LE +SGG ++ G + VYRG+ Y
Sbjct: 293 KNLCYHLEEKSGGKVIH----RVGGVVFVYRGRHY 323
Score = 39.3 bits (90), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 8/108 (7%)
Query: 375 PESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQA 434
PE +T EE R+ G + L + G++ V+++ ++ +LVKI +
Sbjct: 351 PEGLTKEEADEMRRKGRDLLPICKLAKNGIYITLVKDVRDAFEGNDLVKIDCEGLNPSDY 410
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKD----YQRPSTLRPK 478
KKI L VL+S D +++YRGK+ Y +P TL PK
Sbjct: 411 KKIGAKLRDLVPCVLLSFDD----EQILMYRGKEWKSRYSKPLTLIPK 454
>gi|194704400|gb|ACF86284.1| unknown [Zea mays]
Length = 130
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 337 LVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAF 396
+ + +E +L++A + +AE+ + ++E++ P + E+I+++ER+M RK+GL+MK F
Sbjct: 37 VAKDVETRLSQAIAEKAKAEKLIEELEKA-SPLSKAEVRETISEDERYMLRKVGLKMKQF 95
Query: 397 LLLG 400
LLLG
Sbjct: 96 LLLG 99
>gi|357132021|ref|XP_003567631.1| PREDICTED: CRS2-associated factor 2, chloroplastic-like
[Brachypodium distachyon]
Length = 607
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 397 LLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQAKKIALALEAESGGVLVSVDKI 455
L +GR G+ +E +H HW+ +E+ K+ + V T D K + LE +SGG ++
Sbjct: 252 LNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDM-KNLCYHLEEKSGGKVIH---- 306
Query: 456 SKGYAMVVYRGKDY 469
G + +YRG++Y
Sbjct: 307 RVGGVVFLYRGRNY 320
Score = 38.9 bits (89), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 372 QADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTF 431
Q PE +T EE R G + L + G++ V+++ ++ +LVKI +
Sbjct: 345 QLAPEGLTIEEAAEMRIRGQNLLPIFKLAKNGIYLNLVKDVRDAFEGNDLVKINCEGLEP 404
Query: 432 DQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKD----YQRPSTLRPK 478
KKI L +L+S D +++YRGK+ Y +P TL PK
Sbjct: 405 SDYKKIGAKLRDLVPCILLSFDN----EQILIYRGKEWKSRYSKPLTLIPK 451
>gi|222618317|gb|EEE54449.1| hypothetical protein OsJ_01538 [Oryza sativa Japonica Group]
Length = 587
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 397 LLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQAKKIALALEAESGGVLVSVDKI 455
L +GR G+ +E +H HW+ +E+ K+ + V T D K + LE +SGG ++
Sbjct: 229 LNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDM-KNLCYHLEEKSGGKVIH---- 283
Query: 456 SKGYAMVVYRGKDYQ 470
G + +YRG++Y
Sbjct: 284 RVGGVVFLYRGRNYN 298
>gi|125525663|gb|EAY73777.1| hypothetical protein OsI_01650 [Oryza sativa Indica Group]
Length = 609
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 397 LLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQAKKIALALEAESGGVLVSVDKI 455
L +GR G+ +E +H HW+ +E+ K+ + V T D K + LE +SGG ++
Sbjct: 251 LNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDM-KNLCYHLEEKSGGKVIH---- 305
Query: 456 SKGYAMVVYRGKDYQRPSTLRPK 478
G + +YRG++Y P T RP+
Sbjct: 306 RVGGVVFLYRGRNYN-PRT-RPR 326
>gi|115436276|ref|NP_001042896.1| Os01g0323300 [Oryza sativa Japonica Group]
gi|75115027|sp|Q657G7.1|CAF2P_ORYSJ RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|52075771|dbj|BAD44991.1| putative CRS2-associated factor 2 [Oryza sativa Japonica Group]
gi|52076260|dbj|BAD45045.1| putative CRS2-associated factor 2 [Oryza sativa Japonica Group]
gi|113532427|dbj|BAF04810.1| Os01g0323300 [Oryza sativa Japonica Group]
Length = 607
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 397 LLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQAKKIALALEAESGGVLVSVDKI 455
L +GR G+ +E +H HW+ +E+ K+ + V T D K + LE +SGG ++
Sbjct: 249 LNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDM-KNLCYHLEEKSGGKVIH---- 303
Query: 456 SKGYAMVVYRGKDYQRPSTLRPKNLL 481
G + +YRG++Y P T RP+ L
Sbjct: 304 RVGGVVFLYRGRNYN-PRT-RPRYPL 327
>gi|224130086|ref|XP_002320749.1| predicted protein [Populus trichocarpa]
gi|222861522|gb|EEE99064.1| predicted protein [Populus trichocarpa]
Length = 405
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 359 LSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKY 418
L K E + P + + ++ EE RK GL + A L R G F V + +
Sbjct: 258 LWKPHEPVYPRLIKTTIDGLSIEETKEMRKRGLAVPALTKLSRNGYFGSLVPMVRDAFLV 317
Query: 419 RELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRP 472
ELV+I + +KKI L +LV+ DK +VV+RGKDY+ P
Sbjct: 318 SELVRIDCQGLDRSDSKKIGCKLRDLVPCILVTFDK----EQIVVWRGKDYKPP 367
>gi|225453847|ref|XP_002272563.1| PREDICTED: CRS2-associated factor 1, mitochondrial [Vitis vinifera]
gi|296089125|emb|CBI38828.3| unnamed protein product [Vitis vinifera]
Length = 418
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 392 RMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI-IVKVKTFDQAKKIALALEAESGGVLV 450
R K + LGR G+ + ++H HWK+ E V+I + V T D K + LE ++ G ++
Sbjct: 180 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCMGVPTVDM-KNVCTQLEDKTSGKVI 238
Query: 451 SVDKISKGYAMVVYRGKDYQ 470
+G +V+YRG++Y
Sbjct: 239 H----RQGGLLVLYRGRNYH 254
>gi|115475027|ref|NP_001061110.1| Os08g0174900 [Oryza sativa Japonica Group]
gi|75133775|sp|Q6Z4U2.1|CAF1M_ORYSJ RecName: Full=CRS2-associated factor 1, mitochondrial; Flags:
Precursor
gi|40253285|dbj|BAD05220.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|40253602|dbj|BAD05547.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|113623079|dbj|BAF23024.1| Os08g0174900 [Oryza sativa Japonica Group]
gi|125560323|gb|EAZ05771.1| hypothetical protein OsI_28005 [Oryza sativa Indica Group]
Length = 428
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 376 ESITDEER-FMFRKL-GLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI-IVKVKTFD 432
E +T ER F+ K R K + LGR G+ + ++H HWK E V++ + V T D
Sbjct: 155 EPLTPAERAFLVSKCQKSRTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVD 214
Query: 433 QAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQ 470
+ + LE ++GG+++ G +++YRG+ Y
Sbjct: 215 M-QNVCHQLEDKTGGLIIH----RHGGQLILYRGRHYN 247
>gi|162464008|ref|NP_001105669.1| CRS2-associated factor 2, chloroplastic precursor [Zea mays]
gi|75147311|sp|Q84N48.1|CAF2P_MAIZE RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|30349369|gb|AAP22136.1| CRS2-associated factor 2 [Zea mays]
gi|414877310|tpg|DAA54441.1| TPA: crs2 associated factor2 [Zea mays]
Length = 611
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 376 ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQA 434
E +T E K + L +GR G+ +E +H HW+ +E+ K+ + V T D
Sbjct: 232 EPLTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDM- 290
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDY 469
K + LE +SGG ++ G + +YRG+ Y
Sbjct: 291 KNLCYHLEEKSGGKVIH----RVGGVVFLYRGRHY 321
>gi|297603821|ref|NP_001054631.2| Os05g0145300 [Oryza sativa Japonica Group]
gi|255676015|dbj|BAF16545.2| Os05g0145300, partial [Oryza sativa Japonica Group]
Length = 92
Score = 44.3 bits (103), Expect = 0.22, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 348 AERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDG 407
A++K+ + L K E PA R DPE +T E+ ++K+G R + ++ +G RGVF G
Sbjct: 11 AKKKVALLLQKLKKYELPDLPAPRH-DPELLTAEQLQAYKKIGFRNRNYVPVGVRGVFGG 69
Query: 408 TVENMHLHWKYRELVKI 424
V+NMH+HWK+ E V++
Sbjct: 70 VVQNMHMHWKFHETVQV 86
>gi|125602364|gb|EAZ41689.1| hypothetical protein OsJ_26223 [Oryza sativa Japonica Group]
Length = 615
Score = 43.9 bits (102), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 376 ESITDEER-FMFRKL-GLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI-IVKVKTFD 432
E +T ER F+ K R K + LGR G+ + ++H HWK E V++ + V T D
Sbjct: 131 EPLTPAERAFLVSKCQKSRTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVD 190
Query: 433 QAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQ 470
+ + LE ++GG+++ G +++YRG+ Y
Sbjct: 191 M-QNVCHQLEDKTGGLIIH----RHGGQLILYRGRHYN 223
>gi|242078343|ref|XP_002443940.1| hypothetical protein SORBIDRAFT_07g004760 [Sorghum bicolor]
gi|241940290|gb|EES13435.1| hypothetical protein SORBIDRAFT_07g004760 [Sorghum bicolor]
Length = 437
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 376 ESITDEER-FMFRKLGL-RMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI-IVKVKTFD 432
E +T ER F+ K R K + LGR G+ + ++H +WK E V+I + V T D
Sbjct: 162 EPLTPAERAFLVDKCQKNRTKRQINLGRDGLTHNMLNDIHNNWKTCEAVRIKCLGVPTVD 221
Query: 433 QAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQ 470
+ + LE ++GGV++ G +++YRG+ Y
Sbjct: 222 M-QNVCHQLEDKTGGVIIH----RHGSLLILYRGRHYN 254
>gi|15240416|ref|NP_200300.1| CRS2-associated factor 2 [Arabidopsis thaliana]
gi|75170294|sp|Q9FFU1.1|CAF2M_ARATH RecName: Full=CRS2-associated factor 2, mitochondrial; Flags:
Precursor
gi|9758269|dbj|BAB08768.1| unnamed protein product [Arabidopsis thaliana]
gi|332009170|gb|AED96553.1| CRS2-associated factor 2 [Arabidopsis thaliana]
Length = 358
Score = 43.1 bits (100), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 399 LGRRGVFDGTVENMHLHWKYRELVKI-IVKVKTFDQAKKIALALEAESGGVLVSVDKISK 457
LG+ GV ++++H HWK E V+I + V T D I LE +SGG +V +
Sbjct: 166 LGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDM-DNICFHLEEKSGGKIVYRNI--- 221
Query: 458 GYAMVVYRGKDY 469
+V+YRG++Y
Sbjct: 222 -NILVLYRGRNY 232
>gi|297792957|ref|XP_002864363.1| hypothetical protein ARALYDRAFT_331830 [Arabidopsis lyrata subsp.
lyrata]
gi|297310198|gb|EFH40622.1| hypothetical protein ARALYDRAFT_331830 [Arabidopsis lyrata subsp.
lyrata]
Length = 362
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 399 LGRRGVFDGTVENMHLHWKYRELVKI-IVKVKTFDQAKKIALALEAESGGVLVSVDKISK 457
LG+ GV ++++H HWK E V+I + V T D I LE +SGG +V
Sbjct: 162 LGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDM-DNICFHLEEKSGGKIV----YRH 216
Query: 458 GYAMVVYRGKDY 469
+V+YRG++Y
Sbjct: 217 INILVLYRGRNY 228
>gi|408373090|ref|ZP_11170788.1| hypothetical protein A11A3_03384 [Alcanivorax hongdengensis A-11-3]
gi|407766928|gb|EKF75367.1| hypothetical protein A11A3_03384 [Alcanivorax hongdengensis A-11-3]
Length = 104
Score = 42.7 bits (99), Expect = 0.52, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 375 PESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQA 434
P S D +R R++G +KA L+ G +G+ D VE ++L + EL+K+ V +T D
Sbjct: 2 PLSNQDIKRL--RRIGHHLKAILIFGDKGLTDNFVEELNLRLEDHELIKVKVNAETRDDR 59
Query: 435 KKIALALEAESGGVLV 450
I AL +SG L+
Sbjct: 60 ADIVTALCQKSGAELI 75
>gi|14596153|gb|AAK68804.1| Unknown protein [Arabidopsis thaliana]
Length = 284
Score = 42.7 bits (99), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 361 KVEESLKPAERQADPESITDEERFMFRKLGLRMKAF--LLLGRRGVFDGTVENMHLHWKY 418
K+EE + + S+T+ ER +L R K + LGR G+ + +++ HWK+
Sbjct: 142 KLEEKRRKVREKIQGASLTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKH 201
Query: 419 RELVKI-IVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDY 469
E V++ + V T D K + LE ++ G +VS +V+YRG++Y
Sbjct: 202 AEAVRVKCLGVPTLDM-KNVIFHLEDKTFGQVVS----KHSGTLVLYRGRNY 248
>gi|297802930|ref|XP_002869349.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315185|gb|EFH45608.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 408
Score = 42.4 bits (98), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 361 KVEESLKPAERQADPESITDEERFMFRKLGLRMKAF--LLLGRRGVFDGTVENMHLHWKY 418
K+EE + + S+T+ ER +L R K + LGR G+ + +++ HWK+
Sbjct: 143 KLEEKRRKVREKIQGASLTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDIYNHWKH 202
Query: 419 RELVKI-IVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDY 469
E V++ + V T D K + LE ++ G +VS +V+YRG++Y
Sbjct: 203 AEAVRVKCLGVPTLDM-KNVIFHLEDKTFGQVVS----KHCGTLVLYRGRNY 249
>gi|22329043|ref|NP_194830.2| CRS2-associated factor 1 [Arabidopsis thaliana]
gi|75161464|sp|Q8VYD9.1|CAF1M_ARATH RecName: Full=CRS2-associated factor 1, mitochondrial; Flags:
Precursor
gi|18176015|gb|AAL59968.1| unknown protein [Arabidopsis thaliana]
gi|20465409|gb|AAM20129.1| unknown protein [Arabidopsis thaliana]
gi|332660446|gb|AEE85846.1| CRS2-associated factor 1 [Arabidopsis thaliana]
Length = 405
Score = 42.4 bits (98), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 361 KVEESLKPAERQADPESITDEERFMFRKLGLRMKAF--LLLGRRGVFDGTVENMHLHWKY 418
K+EE + + S+T+ ER +L R K + LGR G+ + +++ HWK+
Sbjct: 142 KLEEKRRKVREKIQGASLTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKH 201
Query: 419 RELVKI-IVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDY 469
E V++ + V T D K + LE ++ G +VS +V+YRG++Y
Sbjct: 202 AEAVRVKCLGVPTLDM-KNVIFHLEDKTFGQVVS----KHSGTLVLYRGRNY 248
>gi|326525845|dbj|BAJ93099.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 607
Score = 42.4 bits (98), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 397 LLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQAKKIALALEAESGGVLVSVDKI 455
L +GR G+ +E +H HW+ +E+ K+ + V T D + LE +SGG ++
Sbjct: 251 LNIGRDGLTHNMLEMIHCHWRRQEVCKVRCRGVPTVDM-NNLCYHLEEKSGGKVIK---- 305
Query: 456 SKGYAMVVYRGKDYQ 470
G + +YRG++Y
Sbjct: 306 RVGGVVFLYRGRNYN 320
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 8/124 (6%)
Query: 359 LSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKY 418
L K + P Q PE +T EE R+ G + L L + G++ V+++ ++
Sbjct: 331 LWKPATPVYPKLIQQAPEGLTVEEAAEMRRRGQILLPILKLAKNGIYINLVKDVQDAFEG 390
Query: 419 RELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKD----YQRPST 474
+LVKI K KKI L VL+S DK +++YRGK Y +P T
Sbjct: 391 NDLVKIDCKGLEPSDYKKIGAKLRDLVPCVLLSFDK----EQILIYRGKGWKSRYLKPLT 446
Query: 475 LRPK 478
PK
Sbjct: 447 PFPK 450
>gi|168040806|ref|XP_001772884.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675795|gb|EDQ62286.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 463
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 399 LGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQAKKIALALEAESGGVLVSVDKISK 457
LGR G+ + +H HWK R + K+ K V T D + LE ++GG ++ + +
Sbjct: 112 LGRDGLTHNMLNLVHEHWKRRRVCKVKCKGVPTVDM-DNVCRVLEEKTGGKII----LRQ 166
Query: 458 GYAMVVYRGKDY 469
G A+ ++RG++Y
Sbjct: 167 GGAVYLFRGRNY 178
>gi|388514061|gb|AFK45092.1| unknown [Lotus japonicus]
Length = 161
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 165 LARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSER 224
L RK+A +++ P A+G+S + G+A A+ ++K S+A + +K + T+ +
Sbjct: 40 LLRKQALQMKKR-----PVLAIGKSNTVSGIAKAIKTHFQKHSLAIVNVKGRAKGTSVQE 94
Query: 225 MVEDIKKLTGGTLLSRNKDFLVFYRG 250
+V +++ TG L+S+ ++ YRG
Sbjct: 95 VVFKLEQATGAVLVSQEPSKVILYRG 120
>gi|42573097|ref|NP_974645.1| CRS2-associated factor 1 [Arabidopsis thaliana]
gi|332660445|gb|AEE85845.1| CRS2-associated factor 1 [Arabidopsis thaliana]
Length = 341
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 361 KVEESLKPAERQADPESITDEERFMFRKLGLRMKAF--LLLGRRGVFDGTVENMHLHWKY 418
K+EE + + S+T+ ER +L R K + LGR G+ + +++ HWK+
Sbjct: 142 KLEEKRRKVREKIQGASLTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKH 201
Query: 419 RELVKI-IVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDY 469
E V++ + V T D K + LE ++ G +VS +V+YRG++Y
Sbjct: 202 AEAVRVKCLGVPTLDM-KNVIFHLEDKTFGQVVS----KHSGTLVLYRGRNY 248
>gi|2980765|emb|CAA18192.1| hypothetical protein [Arabidopsis thaliana]
gi|7270003|emb|CAB79819.1| hypothetical protein [Arabidopsis thaliana]
Length = 392
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 361 KVEESLKPAERQADPESITDEERFMFRKLGLRMKAF--LLLGRRGVFDGTVENMHLHWKY 418
K+EE + + S+T+ ER +L R K + LGR G+ + +++ HWK+
Sbjct: 142 KLEEKRRKVREKIQGASLTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKH 201
Query: 419 RELVKI-IVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDY 469
E V++ + V T D K + LE ++ G +VS +V+YRG++Y
Sbjct: 202 AEAVRVKCLGVPTLDM-KNVIFHLEDKTFGQVVS----KHSGTLVLYRGRNY 248
>gi|356560247|ref|XP_003548405.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like [Glycine
max]
Length = 396
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 399 LGRRGVFDGTVENMHLHWKYRELVKI-IVKVKTFDQAKKIALALEAESGGVLVSVDKISK 457
LGR G+ + +H HWK+ E V+I + V T D I LE ++ G ++
Sbjct: 182 LGRDGLTHNMLNVIHNHWKFAEAVRIKCMGVPTMDM-NNICTQLEDKTFGKVI----FRH 236
Query: 458 GYAMVVYRGKDY 469
G +++YRG++Y
Sbjct: 237 GGTLILYRGRNY 248
>gi|255541412|ref|XP_002511770.1| conserved hypothetical protein [Ricinus communis]
gi|223548950|gb|EEF50439.1| conserved hypothetical protein [Ricinus communis]
Length = 411
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 376 ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAK 435
E ++ EE RK GL + A L + G + V + + ELV+I + K
Sbjct: 275 EGLSIEETKEMRKKGLALPALTKLAKNGYYASLVPMVRDAFLVNELVRIDCQGLPKSDYK 334
Query: 436 KIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRP 472
KI L +LV+ +K +VV+RGKDY+ P
Sbjct: 335 KIGCKLRDLVPCILVTFEK----EQIVVWRGKDYKPP 367
>gi|226508160|ref|NP_001140244.1| uncharacterized protein LOC100272285 [Zea mays]
gi|194698680|gb|ACF83424.1| unknown [Zea mays]
gi|413917198|gb|AFW57130.1| hypothetical protein ZEAMMB73_054545 [Zea mays]
Length = 424
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 392 RMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI-IVKVKTFDQAKKIALALEAESGGVLV 450
R K + LGR G + ++H +WK E V+I + V T D + + LE ++GG+++
Sbjct: 181 RTKRQINLGRDGFTHNMLSDVHNNWKTCEAVRIKCLGVPTVDM-QNVCHQLEDKTGGLII 239
Query: 451 SVDKISKGYAMVVYRGKDYQ 470
G +++YRG+ Y
Sbjct: 240 H----RHGSLLILYRGRHYN 255
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.313 0.130 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,362,323,632
Number of Sequences: 23463169
Number of extensions: 393922624
Number of successful extensions: 1400672
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 999
Number of HSP's that attempted gapping in prelim test: 1394538
Number of HSP's gapped (non-prelim): 5481
length of query: 622
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 473
effective length of database: 8,863,183,186
effective search space: 4192285646978
effective search space used: 4192285646978
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 80 (35.4 bits)