BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006993
(622 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QZM|A Chain A, Staphylococcus Aureus Isda Neat Domain H83a Variant In
Complex With Heme
pdb|3QZM|B Chain B, Staphylococcus Aureus Isda Neat Domain H83a Variant In
Complex With Heme
Length = 127
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 46 ASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETD 105
S +SQAT + I+ Q+ G+S +A D Q P NN + Q L AS +E
Sbjct: 1 GSHMSQATSQPINFQVQKDGSSEKSAMDDYMQHPGKVIKQNNKYYFQTVLNNASFWKEYK 60
Query: 106 F 106
F
Sbjct: 61 F 61
>pdb|1RQ8|A Chain A, Solution Structure Of The Hypothetical Protein Sav1595
From Staphylococcus Aureus, A Putative Rna Binding
Protein
Length = 104
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 378 ITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKI 437
+T +++ R L + +G+ G+ + ++ + + REL+K+ V FD K++
Sbjct: 2 LTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKEL 61
Query: 438 ALALEAESGGVLVSVDKISKGYAMVVYR 465
A L + LV V G +V+YR
Sbjct: 62 AETLSEATRSELVQV----IGSMIVIYR 85
>pdb|2O1A|A Chain A, Crystal Structure Of Iron-regulated Surface Determinant
Protein A From Staphylococcus Aureus- Targeted Domain
47...188
Length = 142
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 46 ASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETD 105
++ VSQAT + I+ Q+ G+S + D Q P NN + Q L AS +E
Sbjct: 12 STQVSQATSQPINFQVQKDGSSEKSHXDDYXQHPGKVIKQNNKYYFQTVLNNASFWKEYK 71
Query: 106 F 106
F
Sbjct: 72 F 72
>pdb|1LN4|A Chain A, Crystal Structure Of E. Coli Yhby
Length = 104
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 378 ITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKK- 436
++ +++ + L +K +LLG G+ +G + + ++ EL+K VK+ T D+ K
Sbjct: 3 LSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIK--VKIATEDRETKT 60
Query: 437 -IALALEAESGGVLVSVDKISKGYAMVVYR 465
I A+ E+G V V G +V+YR
Sbjct: 61 LIVEAIVRETGACNVQVI----GKTLVLYR 86
>pdb|3QZL|A Chain A, Staphylococcus Aureus Isda Neat Domain K75a Variant In
Complex With Heme
Length = 127
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 46 ASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETD 105
S +SQAT + I+ Q+ G+S + D Q P NN + Q L AS +E
Sbjct: 1 GSHMSQATSQPINFQVQADGSSEKSHMDDYMQHPGKVIKQNNKYYFQTVLNNASFWKEYK 60
Query: 106 F 106
F
Sbjct: 61 F 61
>pdb|3QZO|A Chain A, Staphylococcus Aureus Isda Neat Domain In Complex With
Heme, Reduced Crystal
pdb|3QZO|B Chain B, Staphylococcus Aureus Isda Neat Domain In Complex With
Heme, Reduced Crystal
pdb|3QZO|C Chain C, Staphylococcus Aureus Isda Neat Domain In Complex With
Heme, Reduced Crystal
pdb|3QZO|D Chain D, Staphylococcus Aureus Isda Neat Domain In Complex With
Heme, Reduced Crystal
pdb|3QZP|A Chain A, Staphylococcus Aureus Isda Neat Domain In Complex With
Cobalt- Protoporphyrin Ix
pdb|3QZP|B Chain B, Staphylococcus Aureus Isda Neat Domain In Complex With
Cobalt- Protoporphyrin Ix
Length = 127
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 46 ASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETD 105
S +SQAT + I+ Q+ G+S + D Q P NN + Q L AS +E
Sbjct: 1 GSHMSQATSQPINFQVQKDGSSEKSHMDDYMQHPGKVIKQNNKYYFQTVLNNASFWKEYK 60
Query: 106 F 106
F
Sbjct: 61 F 61
>pdb|3QZN|A Chain A, Staphylococcus Aureus Isda Neat Domain Y166a Variant In
Complex With Heme
pdb|3QZN|B Chain B, Staphylococcus Aureus Isda Neat Domain Y166a Variant In
Complex With Heme
pdb|3QZN|C Chain C, Staphylococcus Aureus Isda Neat Domain Y166a Variant In
Complex With Heme
Length = 127
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 46 ASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETD 105
S +SQAT + I+ Q+ G+S + D Q P NN + Q L AS +E
Sbjct: 1 GSHMSQATSQPINFQVQKDGSSEKSHMDDYMQHPGKVIKQNNKYYFQTVLNNASFWKEYK 60
Query: 106 F 106
F
Sbjct: 61 F 61
>pdb|2ITE|A Chain A, Crystal Structure Of The Isda Neat Domain From
Staphylococcus Aureus
pdb|2ITE|B Chain B, Crystal Structure Of The Isda Neat Domain From
Staphylococcus Aureus
pdb|2ITF|A Chain A, Crystal Structure Isda Neat Domain From Staphylococcus
Aureus With Heme Bound
pdb|2ITF|B Chain B, Crystal Structure Isda Neat Domain From Staphylococcus
Aureus With Heme Bound
pdb|2ITF|C Chain C, Crystal Structure Isda Neat Domain From Staphylococcus
Aureus With Heme Bound
pdb|2ITF|D Chain D, Crystal Structure Isda Neat Domain From Staphylococcus
Aureus With Heme Bound
Length = 127
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 27/61 (44%)
Query: 46 ASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETD 105
S SQAT + I+ Q+ G+S + D Q P NN + Q L AS +E
Sbjct: 1 GSHXSQATSQPINFQVQKDGSSEKSHXDDYXQHPGKVIKQNNKYYFQTVLNNASFWKEYK 60
Query: 106 F 106
F
Sbjct: 61 F 61
>pdb|3A0O|A Chain A, Crystal Structure Of Alginate Lyase From Agrobacterium
Tumefaciens C58
pdb|3A0O|B Chain B, Crystal Structure Of Alginate Lyase From Agrobacterium
Tumefaciens C58
Length = 776
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 41 RNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSN 81
+ LP S A + H ++ ++ LSA AD A+DP++
Sbjct: 122 KTPLPGRSARHAAAQTSHPRLWLNSEQLSAFADAVAKDPNH 162
>pdb|3AFL|A Chain A, Crystal Structure Of Exotype Alginate Lyase Atu3025 H531a
Complexed With Alginate Trisaccharide
Length = 776
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 41 RNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSN 81
+ LP S A + H ++ ++ LSA AD A+DP++
Sbjct: 122 KTPLPGRSARHAAAQTSHPRLWLNSEQLSAFADAVAKDPNH 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,726,140
Number of Sequences: 62578
Number of extensions: 644190
Number of successful extensions: 1312
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1300
Number of HSP's gapped (non-prelim): 32
length of query: 622
length of database: 14,973,337
effective HSP length: 105
effective length of query: 517
effective length of database: 8,402,647
effective search space: 4344168499
effective search space used: 4344168499
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)