BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006993
(622 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FYT6|CRS1_MAIZE Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1
Length = 715
Score = 357 bits (917), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 201/497 (40%), Positives = 299/497 (60%), Gaps = 51/497 (10%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
KTGGLV+W G +YRG Y Q K H ++
Sbjct: 237 KTGGLVVWTKGDMHFVYRGSKY-----------------------QQNAKHSHTFLT--- 270
Query: 66 NSLSAAADKTAQDPSNFDSYNNVH---ATQVNLETASEEQETDFVREVKYEDEVEKLLDG 122
NVH A Q N ++ +++ + V+ YE EV +LLD
Sbjct: 271 ---------------------NVHKDDAFQENDQSICGQKDEEPVKGTLYEREVNRLLDT 309
Query: 123 LGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPP 182
LGPR+ DW PLPVDAD+LP VPG + P+R+ P GVR TLA +E T L++LAR+LP
Sbjct: 310 LGPRFVDWWWDTPLPVDADLLPEFVPGSKTPYRLCPPGVRPTLADEELTYLRKLARLLPT 369
Query: 183 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNK 242
HFALGR+ +LQGLA A++KLWEKS IAKIA+K G+Q T +E+M ++K LTGGT++ RNK
Sbjct: 370 HFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQMAWNLKHLTGGTVILRNK 429
Query: 243 DFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGT 302
DF++ YRGK+FL V + + +RE Q +EE+ARL+A L + + + + GT
Sbjct: 430 DFIILYRGKDFLPGGVAQTVIQREAQVHDEQVKEEEARLKA-VDSLQMVGELSEESSLGT 488
Query: 303 LKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKV 362
+E ++++ ++ + EAE R ++ E KL+ +K+ R+ +AL+K+
Sbjct: 489 FREYQGFHAKFVHENTENSNTMIELEAEKYRLEKELKDHEWKLSVLNKKIERSNQALAKL 548
Query: 363 EESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELV 422
S P+E+ AD E +T+EE+ MFR++G +M +LLGRRG+FDG +E +H HWK++E+V
Sbjct: 549 HSSWSPSEQSADREHLTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVV 608
Query: 423 KIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLT 482
K+I K Q A LE E+GG+L++V+K++ +A+++YRGK+Y+RP+ NLLT
Sbjct: 609 KVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTSHAIILYRGKNYRRPAKSSFSNLLT 668
Query: 483 KRKALARSIELQRQEAL 499
KR+AL RSIE+QR+ ++
Sbjct: 669 KREALRRSIEVQRRGSM 685
>sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Oryza sativa subsp. japonica
GN=Os08g0360100 PE=2 SV=1
Length = 725
Score = 352 bits (903), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 197/501 (39%), Positives = 302/501 (60%), Gaps = 42/501 (8%)
Query: 6 KTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSG 65
KTGGLV+W G +YRG SY ++ KR H+
Sbjct: 222 KTGGLVVWTRGGIHFVYRGSSY----LENAKR--------------------HRDFVNYN 257
Query: 66 NSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGP 125
LS T+ +P++ Y + T N +++++ ++ YE EV +LLD LGP
Sbjct: 258 EELSPV---TSNNPTSQGKYWSKDETLTNDNDEADDKDDKPIKGTLYEREVNRLLDSLGP 314
Query: 126 RYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFA 185
R+ DW PLPVDAD+LP +VP ++ PFR P GVR LA +E T L++ AR LP HF
Sbjct: 315 RFIDWWWNTPLPVDADLLPEVVPDFKTPFRQCPPGVRPALADEELTYLRKHARPLPTHFV 374
Query: 186 LGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFL 245
LGR+ +LQGLA A++KLWEKS IAK+A+K G+Q T E+M ++K+LTGGT++ RNKD++
Sbjct: 375 LGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNTNHEQMARNLKRLTGGTVILRNKDYI 434
Query: 246 VFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKE 305
+ YRGK+FL V E++ ERE Q +EE+ARL+ + + + + GT +E
Sbjct: 435 IIYRGKDFLPGGVAESVIERESQVHDQQAKEEEARLKMADSLQMIVGLSSERSYVGTFRE 494
Query: 306 TLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAE-------RKLLRAERA 358
D + +R ++ N + E ++H +LEK+L E +K+ R+ +
Sbjct: 495 YQDFHDSHARRTTEN---NFRIQLEAKKH-----RLEKELKDQEWRLSMLTKKIERSNQV 546
Query: 359 LSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKY 418
L+K+ S P+++ D E +T+EER +FRK+GL+M +LLGRRGVF+G +E +H HWK+
Sbjct: 547 LAKLHSSWSPSKKDGDRELLTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKH 606
Query: 419 RELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPK 478
+E+VK+I K Q ++ LE E+GG L+++++ + +A+++YRGK+Y+RP+ P
Sbjct: 607 KEVVKVITKQNQASQITYTSMMLEVETGGTLIAIERFTTSHAIILYRGKNYRRPTKSAPS 666
Query: 479 NLLTKRKALARSIELQRQEAL 499
NLLTKR+AL RSIE+QR+ ++
Sbjct: 667 NLLTKREALQRSIEVQRRGSM 687
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 120/294 (40%), Gaps = 58/294 (19%)
Query: 5 RKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMS 64
R TGG VI R+ + +YRG + +P + + + +R S V K+ ++ M+
Sbjct: 420 RLTGGTVILRNKDYIIIYRGKDF-LPG-GVAESVIERE----SQVHDQQAKEEEARLKMA 473
Query: 65 GNSLSAAADKTAQDP--SNFDSYNNVH------ATQVNLETASEEQETDFVREVKYED-- 114
+SL +++ F Y + H T+ N E ++ +E+K ++
Sbjct: 474 -DSLQMIVGLSSERSYVGTFREYQDFHDSHARRTTENNFRIQLEAKKHRLEKELKDQEWR 532
Query: 115 ------EVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARK 168
++E+ L ++ W P D D R L +
Sbjct: 533 LSMLTKKIERSNQVLAKLHSSW---SPSKKDGD--------------------RELLTEE 569
Query: 169 EATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALK--RGVQLTTSERMV 226
E +++ + H LGR +G+ + + W+ + K+ K + Q+T + M+
Sbjct: 570 ERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYTSMML 629
Query: 227 EDIKKLTGGTLLSRNK----DFLVFYRGKNFLSPD---VTEALQERERLAKSLQ 273
E TGGTL++ + ++ YRGKN+ P + L +RE L +S++
Sbjct: 630 E---VETGGTLIAIERFTTSHAIILYRGKNYRRPTKSAPSNLLTKREALQRSIE 680
>sp|Q9LF10|CRS1_ARATH Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=2
SV=2
Length = 720
Score = 312 bits (800), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 174/391 (44%), Positives = 250/391 (63%), Gaps = 7/391 (1%)
Query: 112 YEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEAT 171
YE E ++LLDGLGPRY DW P PVDAD+LP +V GY P R P R+ L +E T
Sbjct: 308 YEREADRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRAKLTDEELT 367
Query: 172 NLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKK 231
L+ +A+ LP HF LGR+ LQGLA A++KLWEK IAKIA+K G T +E M ++++
Sbjct: 368 YLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMADELRY 427
Query: 232 LTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAF--VLP 289
LTGG L+ RNK +V YRGK+FLS +V + +++RERL Q EE R V+
Sbjct: 428 LTGGVLILRNKYLIVLYRGKDFLSDEVADLVEDRERLLSRYQHFEETKRESDIELLEVVT 487
Query: 290 SIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAE 349
+ + ++++ +GTL E + ++G + NL EAE R ++ E KL+ +
Sbjct: 488 NGKQLKETNKSGTLLEFQELQRKFG----EMDPRNLETEAEKARLEKELKSQEHKLSILK 543
Query: 350 RKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTV 409
K+ ++ L K+ KP+E D E +T+EER R++GL+M + L+LGRRGVF G +
Sbjct: 544 SKIEKSNMELFKLNSLWKPSEGDDDIEILTNEERECLRRIGLKMNSSLVLGRRGVFFGVM 603
Query: 410 ENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDY 469
E +H HWK+RE+ K+I K F + A ALE ES GVL+S++K+ +G+A+++YRGK+Y
Sbjct: 604 EGLHQHWKHREVAKVITMQKLFSRVVYTAKALETESNGVLISIEKLKEGHAILIYRGKNY 663
Query: 470 QRPST-LRPKNLLTKRKALARSIELQRQEAL 499
+RPS+ L +NLLTKRKAL RS+ +QR +L
Sbjct: 664 KRPSSKLMAQNLLTKRKALQRSVVMQRLGSL 694
>sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440,
chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2
SV=1
Length = 444
Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 111/182 (60%), Gaps = 6/182 (3%)
Query: 339 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 398
+K+ KL +A +K R + K+E S + AE DPE +T EE F + K+GL+ K ++
Sbjct: 139 EKILNKLRKARKKEERLMETMKKLEPS-ESAETTHDPEILTPEEHFYYLKMGLKCKNYVP 197
Query: 399 LGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKG 458
+GRRG++ G + NMHLHWK + +++++K T D+ K+IA+ L +GG+++ V +G
Sbjct: 198 VGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDV---HEG 254
Query: 459 YAMVVYRGKDYQRPST--LRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSE 516
+++YRGK+Y +P T + P+ L ++KAL +S A+ K++ LE L+++
Sbjct: 255 NTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQ 314
Query: 517 IE 518
E
Sbjct: 315 AE 316
Score = 40.8 bits (94), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 183 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNK 242
+ +GR QG+ + M W+K ++ +K E VE + +LTGG +L ++
Sbjct: 195 YVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVE-LARLTGGIVLDVHE 253
Query: 243 -DFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQAR--LRASAFVLPSIE 292
+ ++ YRGKN++ P TE + R L + ++ + R LRA +P +E
Sbjct: 254 GNTIIMYRGKNYVQPP-TEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLE 305
>sp|Q84N49|CAF1P_MAIZE CRS2-associated factor 1, chloroplastic OS=Zea mays GN=CAF1 PE=1
SV=1
Length = 674
Score = 49.3 bits (116), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 376 ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQA 434
E +T EE K L+ K L +GR G+ +EN+H HWK + + KI K V T D
Sbjct: 183 EPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDM- 241
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQ 470
I LE + GG ++ +G + ++RG++Y
Sbjct: 242 DNICHQLEEKVGGKVIH----RQGGVIFLFRGRNYN 273
Score = 34.3 bits (77), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 51/255 (20%), Positives = 101/255 (39%), Gaps = 46/255 (18%)
Query: 375 PESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQA 434
P +T +E R G ++ LG+ GV+ V + ++ +LV++
Sbjct: 300 PGGLTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFEACDLVRVDCSGLNKSDC 359
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQ 494
+KI L+ +L+S + ++++RG D++ S+L P L S E+
Sbjct: 360 RKIGAKLKDLVPCILLSFE----FEHILMWRGSDWK--SSLPP---------LENSYEVT 404
Query: 495 RQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATEDDDSEDEGDEAY 554
+ + ES +G+ E V +G+ +L SA + + + DEG E +
Sbjct: 405 KVQ---------ESFSGK-----ESNEKVTHSGNVLAQIELVSAATSHKNWNLDEGQEKF 450
Query: 555 LEMYAGGNDNEDEIDNSTHNL------------EMESDFPYHAQDQESETELMDSESEAY 602
+ + + D + NS ++ E +D P ++MD
Sbjct: 451 KD-----STDSDMVLNSAKDVPALFHSTGISRTEPSADIPLEYSPLNPVCDIMDPSLNCR 505
Query: 603 TVHSTYCASTDIVEE 617
++ + C S +VE+
Sbjct: 506 SIPTNNCESRALVEK 520
>sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0495900 PE=2 SV=1
Length = 701
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 376 ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQA 434
E +T EE K L+ K L +GR G+ +EN+H HWK + + KI K V T D
Sbjct: 183 EPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDM- 241
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQ 470
+ LE + GG ++ +G + ++RG++Y
Sbjct: 242 DNVCQQLEEKVGGKVIH----HQGGVIFLFRGRNYN 273
>sp|Q657G7|CAF2P_ORYSJ CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0323300 PE=2 SV=1
Length = 607
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 397 LLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQAKKIALALEAESGGVLVSVDKI 455
L +GR G+ +E +H HW+ +E+ K+ + V T D K + LE +SGG ++
Sbjct: 249 LNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDM-KNLCYHLEEKSGGKVIH---- 303
Query: 456 SKGYAMVVYRGKDYQRPSTLRPKNLL 481
G + +YRG++Y P T RP+ L
Sbjct: 304 RVGGVVFLYRGRNYN-PRT-RPRYPL 327
Score = 37.0 bits (84), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 8/124 (6%)
Query: 359 LSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKY 418
L K + P Q PE +T EE R+ G + L + G++ V ++ ++
Sbjct: 329 LWKPATPVYPKLIQEAPEGLTKEEADEMRRRGKDLLPICKLAKNGIYIYLVRDVRDAFEG 388
Query: 419 RELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKD----YQRPST 474
+LVKI + KKI L VL+S D ++++RGK+ Y +P T
Sbjct: 389 SDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLSFDN----EQILMFRGKEWKSRYPKPLT 444
Query: 475 LRPK 478
L PK
Sbjct: 445 LIPK 448
>sp|Q6Z4U2|CAF1M_ORYSJ CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0174900 PE=2 SV=1
Length = 428
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 376 ESITDEER-FMFRKL-GLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI-IVKVKTFD 432
E +T ER F+ K R K + LGR G+ + ++H HWK E V++ + V T D
Sbjct: 155 EPLTPAERAFLVSKCQKSRTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVD 214
Query: 433 QAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQ 470
+ + LE ++GG+++ G +++YRG+ Y
Sbjct: 215 M-QNVCHQLEDKTGGLIIH----RHGGQLILYRGRHYN 247
Score = 38.1 bits (87), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 359 LSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKY 418
L K E + P + E +T EE RK GL + L + G + V + +
Sbjct: 258 LWKPAEPVYPRLIKTTIEGLTVEETKEMRKKGLYVPVLTKLAKNGYYASLVPMVRDAFLT 317
Query: 419 RELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQ 470
ELV+I K +KI + L ++VS DK ++V+RGKDY
Sbjct: 318 DELVRIDSKGLPKSDYRKIGVKLRDLVPCIIVSFDK----EQIIVWRGKDYN 365
>sp|Q84N48|CAF2P_MAIZE CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1
SV=1
Length = 611
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 376 ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQA 434
E +T E K + L +GR G+ +E +H HW+ +E+ K+ + V T D
Sbjct: 232 EPLTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDM- 290
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDY 469
K + LE +SGG ++ G + +YRG+ Y
Sbjct: 291 KNLCYHLEEKSGGKVIH----RVGGVVFLYRGRHY 321
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 375 PESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQA 434
P+ T EE R+ G + L + G++ V+++ ++ +LVKI +
Sbjct: 349 PDGFTKEEADEMRRKGRDLLPICKLAKNGIYITLVKDVRDAFEGSDLVKIDCEGLNPSDY 408
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKD----YQRPSTLRPK 478
KKI L VL+S D ++++RGK+ Y +P TL PK
Sbjct: 409 KKIGAKLRDLVPCVLLSFDD----EQILMHRGKEWKSRYSKPLTLIPK 452
>sp|Q9FFU1|CAF2M_ARATH CRS2-associated factor 2, mitochondrial OS=Arabidopsis thaliana
GN=At5g54890 PE=2 SV=1
Length = 358
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 399 LGRRGVFDGTVENMHLHWKYRELVKI-IVKVKTFDQAKKIALALEAESGGVLVSVDKISK 457
LG+ GV ++++H HWK E V+I + V T D I LE +SGG +V +
Sbjct: 166 LGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDM-DNICFHLEEKSGGKIVYRNI--- 221
Query: 458 GYAMVVYRGKDY 469
+V+YRG++Y
Sbjct: 222 -NILVLYRGRNY 232
>sp|Q0J7J7|CAF2M_ORYSJ CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0188000 PE=2 SV=2
Length = 366
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 399 LGRRGVFDGTVENMHLHWKYRELVKI-IVKVKTFDQAKKIALALEAESGGVLVSVDKISK 457
LG+ GV ++++H HWK E V+I + V T D I LE ++GG ++ +
Sbjct: 168 LGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDM-DNICFHLEDKTGGKVIYRNI--- 223
Query: 458 GYAMVVYRGKDY---QRP 472
+++YRG++Y QRP
Sbjct: 224 -NILILYRGRNYDPKQRP 240
>sp|Q8VYD9|CAF1M_ARATH CRS2-associated factor 1, mitochondrial OS=Arabidopsis thaliana
GN=At4g31010 PE=2 SV=1
Length = 405
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 361 KVEESLKPAERQADPESITDEERFMFRKLGLRMKAF--LLLGRRGVFDGTVENMHLHWKY 418
K+EE + + S+T+ ER +L R K + LGR G+ + +++ HWK+
Sbjct: 142 KLEEKRRKVREKIQGASLTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKH 201
Query: 419 RELVKI-IVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDY 469
E V++ + V T D K + LE ++ G +VS +V+YRG++Y
Sbjct: 202 AEAVRVKCLGVPTLDM-KNVIFHLEDKTFGQVVS----KHSGTLVLYRGRNY 248
Score = 37.0 bits (84), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Query: 359 LSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKY 418
L K E + P + + ++ +E RK GL + A L + G + V + +
Sbjct: 260 LWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAVPALTKLAKNGYYGSLVPMVRDAFLV 319
Query: 419 RELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRP 472
ELV+I KKI L +LV+ DK +V++RGKDY+ P
Sbjct: 320 SELVRIDCLGLERKDYKKIGAKLRDLVPCILVTFDK----EQVVIWRGKDYKPP 369
>sp|Q9SL79|CAF1P_ARATH CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana
GN=At2g20020 PE=1 SV=2
Length = 701
Score = 40.0 bits (92), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 13/142 (9%)
Query: 376 ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQA 434
E +T EE L+ L +GR G+ + N+H WK R + KI K V T D
Sbjct: 241 EPLTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDM- 299
Query: 435 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALA----RS 490
+ LE + GG ++ +G + ++RG++Y RP+ L K +A R
Sbjct: 300 DNVCEQLEEKIGGKVI----YRRGGVLFLFRGRNYNH--RTRPRFPLMLWKPVAPVYPRL 353
Query: 491 IELQRQEALLKHVATLESNAGR 512
I+ Q E L + AT GR
Sbjct: 354 IQ-QVPEGLTRQEATNMRRKGR 374
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 372 QADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTF 431
Q PE +T +E R+ G + LG+ GV+ V+N+ ++ ELV+I +
Sbjct: 355 QQVPEGLTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCELVRIDCQGMKG 414
Query: 432 DQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQ 470
+KI L+ VLVS + ++++RG++++
Sbjct: 415 SDFRKIGAKLKDLVPCVLVSFE----NEQILIWRGREWK 449
Score = 35.8 bits (81), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 185 ALGRSRQLQ----GLAVAMIK----LWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGT 236
L +RQL GL M+ LW++ + KI K GV + + E +++ GG
Sbjct: 255 CLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCK-GVCTVDMDNVCEQLEEKIGGK 313
Query: 237 LLSRNKDFLVFYRGKNF 253
++ R L +RG+N+
Sbjct: 314 VIYRRGGVLFLFRGRNY 330
Score = 33.1 bits (74), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 161 VRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLT 220
V L R+EATN++R R L P LG++ L + + +E + +I + G++ +
Sbjct: 357 VPEGLTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCELVRIDCQ-GMKGS 415
Query: 221 TSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLS 255
++ +K L L+S + ++ +RG+ + S
Sbjct: 416 DFRKIGAKLKDLVPCVLVSFENEQILIWRGREWKS 450
>sp|Q9LDA9|CAF2P_ARATH CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana
GN=At1g23400 PE=2 SV=1
Length = 564
Score = 40.0 bits (92), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 399 LGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQAKKIALALEAESGGVLVSVDKISK 457
LGR G +E +H HWK R + K+ K V T D + LE ++GG ++
Sbjct: 224 LGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDM-NNVCRVLEEKTGGEIIH----RV 278
Query: 458 GYAMVVYRGKDYQ 470
G + ++RG++Y
Sbjct: 279 GGVVYLFRGRNYN 291
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 359 LSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKY 418
L K + P Q PE +T EE FR G ++ L + GV+ V+++ ++
Sbjct: 302 LWKPAAPVYPKLIQEVPEGLTKEEAHEFRVKGKSLRPICKLSKNGVYVSLVKDVRDAFEL 361
Query: 419 RELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQ 470
LVK+ KKI L+ VL+S D ++++RG++++
Sbjct: 362 SSLVKVDCPGLEPSDYKKIGAKLKELVPCVLLSFDD----EQILMWRGREWK 409
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 224,353,341
Number of Sequences: 539616
Number of extensions: 9590902
Number of successful extensions: 38419
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 396
Number of HSP's that attempted gapping in prelim test: 36845
Number of HSP's gapped (non-prelim): 1689
length of query: 622
length of database: 191,569,459
effective HSP length: 124
effective length of query: 498
effective length of database: 124,657,075
effective search space: 62079223350
effective search space used: 62079223350
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)