Query 006993
Match_columns 622
No_of_seqs 218 out of 671
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 14:22:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006993.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006993hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rq8_A Conserved hypothetical 99.9 7.1E-27 2.4E-31 206.9 13.4 96 377-477 1-96 (104)
2 1jo0_A Hypothetical protein HI 99.9 1.2E-26 4E-31 203.4 13.2 95 377-477 2-96 (98)
3 1jo0_A Hypothetical protein HI 99.4 9.1E-13 3.1E-17 115.6 9.5 88 164-252 2-89 (98)
4 1rq8_A Conserved hypothetical 99.3 9.9E-12 3.4E-16 110.3 9.6 87 165-252 2-88 (104)
5 3nmd_A CGMP dependent protein 30.4 2.1E+02 0.007 24.1 7.7 55 299-367 17-71 (72)
6 3sbx_A Putative uncharacterize 25.2 74 0.0025 30.5 4.8 36 384-420 129-164 (189)
7 2h9u_A DNA/RNA-binding protein 23.2 1.7E+02 0.0059 25.6 6.4 68 394-463 6-75 (102)
8 2j01_J 50S ribosomal protein L 22.2 43 0.0015 31.2 2.4 28 163-190 30-57 (173)
9 2qc7_A ERP31, ERP28, endoplasm 22.2 5.3E+02 0.018 24.9 10.3 43 206-250 55-103 (240)
10 3ka5_A Ribosome-associated pro 21.4 1.4E+02 0.0048 24.5 5.0 51 420-471 1-51 (65)
11 1uii_A Geminin; human, DNA rep 21.1 2E+02 0.0067 24.9 6.0 36 483-520 37-72 (83)
12 2wvr_A Geminin; DNA replicatio 20.5 1E+02 0.0034 30.6 4.7 52 482-535 105-158 (209)
No 1
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.94 E-value=7.1e-27 Score=206.94 Aligned_cols=96 Identities=24% Similarity=0.434 Sum_probs=91.1
Q ss_pred CCCHHHHHHHHHhccCCcceEeeCCCCCCHHHHHHHHHHHhhCCeEeEEEcCCCHHHHHHHHHHHHHHhCCEEEeecccc
Q 006993 377 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKIS 456 (622)
Q Consensus 377 ~LT~eERr~LRklGhkLKPvV~IGK~GVTdgVVeeIh~Awk~hELVKVk~~~~~~ed~keiAe~Lee~TGg~LVqV~kv~ 456 (622)
|||++||++||++||+|+|+|+|||+|||++|+++|+.||++||||||+|.+++.++++++|+.|++.|||++||+
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~---- 76 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQV---- 76 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEE----
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEE----
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred cCcEEEEEecCCCCCCCCCCC
Q 006993 457 KGYAMVVYRGKDYQRPSTLRP 477 (622)
Q Consensus 457 IG~tIILYRGkNYkrP~~l~P 477 (622)
||+++||||++. ..|.+..|
T Consensus 77 IG~~~VLYR~~~-~~~~i~~~ 96 (104)
T 1rq8_A 77 IGSMIVIYRESK-ENKEIELP 96 (104)
T ss_dssp ETTEEEEEECCC-SCCSCCCC
T ss_pred ECCEEEEEeCCC-CCCceecc
Confidence 999999999876 55666555
No 2
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.94 E-value=1.2e-26 Score=203.37 Aligned_cols=95 Identities=19% Similarity=0.345 Sum_probs=89.2
Q ss_pred CCCHHHHHHHHHhccCCcceEeeCCCCCCHHHHHHHHHHHhhCCeEeEEEcCCCHHHHHHHHHHHHHHhCCEEEeecccc
Q 006993 377 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKIS 456 (622)
Q Consensus 377 ~LT~eERr~LRklGhkLKPvV~IGK~GVTdgVVeeIh~Awk~hELVKVk~~~~~~ed~keiAe~Lee~TGg~LVqV~kv~ 456 (622)
.||++||++||++||+|+|+|+|||+|||++|+++|+.||++||||||+|.+++.++++++|+.|++.|||++||+
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~---- 77 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQT---- 77 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEE----
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEE----
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred cCcEEEEEecCCCCCCCCCCC
Q 006993 457 KGYAMVVYRGKDYQRPSTLRP 477 (622)
Q Consensus 457 IG~tIILYRGkNYkrP~~l~P 477 (622)
||+++||||++.. |.+..|
T Consensus 78 IG~~~vLyR~~~~--~~i~lp 96 (98)
T 1jo0_A 78 IGHILVLYRPSEE--AKIQLP 96 (98)
T ss_dssp ETTEEEEECCCSS--CCBCCC
T ss_pred ECCEEEEEccCCC--CCcCCC
Confidence 9999999998733 554444
No 3
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.39 E-value=9.1e-13 Score=115.57 Aligned_cols=88 Identities=23% Similarity=0.338 Sum_probs=85.1
Q ss_pred cCCHHHHHHHHHhhhcCCCeeeeccccccchHHHHHHHHhhccceeEEeeccCCCcCchHHHHHHHhhccCceEEeecCc
Q 006993 164 TLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKD 243 (622)
Q Consensus 164 ~LT~~E~t~Lrrlar~lp~hf~LGRn~~~qGLa~am~klWeks~i~KIa~KrGv~~td~e~ma~eLk~LTGG~lLsr~k~ 243 (622)
.||.++..+||.+|..|.|.|.+|+||..+++...|..+|++++++||.|- +.+..|.+.||++|.+.|||.++++-+.
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl-~~~~~~~~e~a~~la~~t~a~~Vq~IG~ 80 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVA-GADRETKQLIINAIVRETKAAQVQTIGH 80 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEET-TCCHHHHHHHHHHHHHHHCCEEEEEETT
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEe-CCCHHHHHHHHHHHHHHhCCEEEEEECC
Confidence 699999999999999999999999999999999999999999999999995 8889999999999999999999999999
Q ss_pred EEEEEecCC
Q 006993 244 FLVFYRGKN 252 (622)
Q Consensus 244 ~Iv~yRGkd 252 (622)
.+||||++.
T Consensus 81 ~~vLyR~~~ 89 (98)
T 1jo0_A 81 ILVLYRPSE 89 (98)
T ss_dssp EEEEECCCS
T ss_pred EEEEEccCC
Confidence 999999873
No 4
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.28 E-value=9.9e-12 Score=110.28 Aligned_cols=87 Identities=18% Similarity=0.319 Sum_probs=84.4
Q ss_pred CCHHHHHHHHHhhhcCCCeeeeccccccchHHHHHHHHhhccceeEEeeccCCCcCchHHHHHHHhhccCceEEeecCcE
Q 006993 165 LARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDF 244 (622)
Q Consensus 165 LT~~E~t~Lrrlar~lp~hf~LGRn~~~qGLa~am~klWeks~i~KIa~KrGv~~td~e~ma~eLk~LTGG~lLsr~k~~ 244 (622)
||.++..+||.+|..|.|.|.+|+||...++...|...|+.++++||.|- +-+..|.+.+|++|.+.|||.++..-|..
T Consensus 2 Lt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl-~~~~~d~~e~a~~la~~t~a~vVq~IG~~ 80 (104)
T 1rq8_A 2 LTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVL-QNNFDDKKELAETLSEATRSELVQVIGSM 80 (104)
T ss_dssp CCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEEC-CCCHHHHHHHHHHHHHHHTEEEEEEETTE
T ss_pred CCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEe-CCCHHHHHHHHHHHHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999999996 78889999999999999999999999999
Q ss_pred EEEEecCC
Q 006993 245 LVFYRGKN 252 (622)
Q Consensus 245 Iv~yRGkd 252 (622)
+||||++.
T Consensus 81 ~VLYR~~~ 88 (104)
T 1rq8_A 81 IVIYRESK 88 (104)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99999985
No 5
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=30.42 E-value=2.1e+02 Score=24.13 Aligned_cols=55 Identities=20% Similarity=0.301 Sum_probs=37.5
Q ss_pred ccchhHHHHhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 006993 299 TAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLK 367 (622)
Q Consensus 299 ~agtl~e~~~a~~~w~~~~~~~~~~~m~~e~~~~~~~~~~~~~e~KL~~a~~K~~kae~~L~K~e~~~~ 367 (622)
..||+.+..++- ..+..+.......++.+|..|..-..-+..+..+|-|+.+-+.
T Consensus 17 ~mgti~eLq~~L--------------~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSVl~ 71 (72)
T 3nmd_A 17 GRGSLRDLQYAL--------------QEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRSVIR 71 (72)
T ss_dssp --CHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC
T ss_pred cCCcHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 357777766543 2223334455567888899998888888999999999987543
No 6
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=25.21 E-value=74 Score=30.46 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=28.9
Q ss_pred HHHHHhccCCcceEeeCCCCCCHHHHHHHHHHHhhCC
Q 006993 384 FMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRE 420 (622)
Q Consensus 384 r~LRklGhkLKPvV~IGK~GVTdgVVeeIh~Awk~hE 420 (622)
--+.++|.+-||++.++.+|.++.+++-++ ++-...
T Consensus 129 lt~~qlg~~~kPvvlln~~gfw~~l~~~l~-~~~~~G 164 (189)
T 3sbx_A 129 WTEGYLGMHDKSIVVLDPWGHFDGLRAWLS-ELADTG 164 (189)
T ss_dssp HHHHHTTSCCCCEEEECTTCTTHHHHHHHH-HHHHTT
T ss_pred HHHHHhcccCCCEEEecCCccchHHHHHHH-HHHHCC
Confidence 345788888899999999999999999887 444443
No 7
>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*
Probab=23.19 E-value=1.7e+02 Score=25.58 Aligned_cols=68 Identities=9% Similarity=0.078 Sum_probs=53.4
Q ss_pred cceEeeCCCCCCHHHHHHHHHHHhh-CCeEeEEEcCCCHHHHHHHHHHHHHHh-CCEEEeecccccCcEEEE
Q 006993 394 KAFLLLGRRGVFDGTVENMHLHWKY-RELVKIIVKVKTFDQAKKIALALEAES-GGVLVSVDKISKGYAMVV 463 (622)
Q Consensus 394 KPvV~IGK~GVTdgVVeeIh~Awk~-hELVKVk~~~~~~ed~keiAe~Lee~T-Gg~LVqV~kv~IG~tIIL 463 (622)
...+.||+.|++.-|..-+...|.. +.=|.|+-.+..-...=.+|+.|.+.. +|.-|+. +.+|...|-
T Consensus 6 ~n~I~V~~k~~~nyV~~a~~~ll~~g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~--i~i~s~~i~ 75 (102)
T 2h9u_A 6 APEVRIGRKPVMNYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKD--IKIDSQEIE 75 (102)
T ss_dssp CCEEECCSSCHHHHHHHHHHHHTSTTCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEE--EEEEEEEEE
T ss_pred CCEEEEcCCCHHHHHHHHHHHHHhCCCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEE--EEEeeEEEe
Confidence 4789999999988888887455644 778889999988888889999999999 6755454 467776664
No 8
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=22.24 E-value=43 Score=31.23 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=25.5
Q ss_pred CcCCHHHHHHHHHhhhcCCCeeeecccc
Q 006993 163 STLARKEATNLQRLARVLPPHFALGRSR 190 (622)
Q Consensus 163 p~LT~~E~t~Lrrlar~lp~hf~LGRn~ 190 (622)
.+||..+++.||+..|.--.+|.++||.
T Consensus 30 ~gltv~~~~~LR~~lr~~g~~~~V~KNt 57 (173)
T 2j01_J 30 QGLPAKETHALRQALKQNGARLFVAKNT 57 (173)
T ss_pred CCCCHHHHHHHHHHHHHCCcEEEEehhH
Confidence 3799999999999999988999999984
No 9
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Probab=22.17 E-value=5.3e+02 Score=24.94 Aligned_cols=43 Identities=23% Similarity=0.179 Sum_probs=27.0
Q ss_pred cceeEEeecc-CCCcCchHHHHHHHhhc---cCceEEeecCc--EEEEEec
Q 006993 206 SSIAKIALKR-GVQLTTSERMVEDIKKL---TGGTLLSRNKD--FLVFYRG 250 (622)
Q Consensus 206 s~i~KIa~Kr-Gv~~td~e~ma~eLk~L---TGG~lLsr~k~--~Iv~yRG 250 (622)
-.+++|.|.- | .+.+..+|++..-. .|-.++.+++. .++-|.|
T Consensus 55 v~~akVDvd~~g--~~~~~~l~~~~~V~~~~~PTl~~f~~G~~~~~~~y~G 103 (240)
T 2qc7_A 55 LLVAEVGISDYG--DKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTG 103 (240)
T ss_dssp EEEEEECCCCSS--SCCSHHHHHHTTCCGGGCSEEEEEETTCSSCCEECCS
T ss_pred eEEEEEeCCccc--chhhHHHHHHcCCCCCCCCEEEEEeCCCcCcceeecC
Confidence 3567777531 1 23466699988755 67666666655 3567776
No 10
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=21.37 E-value=1.4e+02 Score=24.53 Aligned_cols=51 Identities=22% Similarity=0.141 Sum_probs=36.8
Q ss_pred CeEeEEEcCCCHHHHHHHHHHHHHHhCCEEEeecccccCcEEEEEecCCCCC
Q 006993 420 ELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQR 471 (622)
Q Consensus 420 ELVKVk~~~~~~ed~keiAe~Lee~TGg~LVqV~kv~IG~tIILYRGkNYkr 471 (622)
++|+.|--...+..+.+++.+++-. |-.+.=+...--|.+-|+||.++...
T Consensus 1 ~iVr~K~~~~kpMsveEAv~qmel~-gh~F~vF~n~etg~~nVVYRR~dG~y 51 (65)
T 3ka5_A 1 EIVKTKRFAIKPMSEEEAVLEMELL-GHNFFVFQNGDSNEVNVVYKRKDGNY 51 (65)
T ss_dssp CEEEEECSCCSCBCHHHHHHHHHHH-TCSEEEEEETTTTEEEEEEECTTSCE
T ss_pred CeEEEEeecCCCCCHHHHHHHHHhC-CCcEEEEEeCCCCCEEEEEEeCCCCE
Confidence 4677777777778888899988875 55554444445699999999886543
No 11
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=21.13 E-value=2e+02 Score=24.90 Aligned_cols=36 Identities=28% Similarity=0.467 Sum_probs=24.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006993 483 KRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQM 520 (622)
Q Consensus 483 KrkAl~rS~e~qr~~~l~~~i~~l~k~i~~l~~~l~~~ 520 (622)
+|+||.-+++.- +.|..-|..|+.+|..||.++.+.
T Consensus 37 RR~AL~eaL~EN--~~Lh~~ie~l~eEi~~lk~en~eL 72 (83)
T 1uii_A 37 RRKALYEALKEN--EKLHKEIEQKDNEIARLKKENKEL 72 (83)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678887776543 345556777777777777766544
No 12
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=20.51 E-value=1e+02 Score=30.59 Aligned_cols=52 Identities=25% Similarity=0.402 Sum_probs=31.5
Q ss_pred cHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-C-chHHHHHh
Q 006993 482 TKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGT-G-DEQLYDKL 535 (622)
Q Consensus 482 TKrkAl~rS~e~qr~~~l~~~i~~l~k~i~~l~~~l~~~~~~~~~-~-~~~l~~~~ 535 (622)
-+|+||.-+++.- +.|..-|..|+.+|..|+.++.+....-+. + .++++.+|
T Consensus 105 ~RR~AL~eaLeEN--~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l 158 (209)
T 2wvr_A 105 KRRKALYEALKEN--EKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERL 158 (209)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888876543 355556777777777777776655554333 1 24444444
Done!