BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006994
(622 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 487 bits (1253), Expect = e-138, Method: Compositional matrix adjust.
Identities = 256/560 (45%), Positives = 350/560 (62%), Gaps = 26/560 (4%)
Query: 60 RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIV 119
RRSA+Y+P+ W YD+L S + +E Y + +KL+ EVR + N++ ++ L LE++
Sbjct: 15 RRSADYEPNSWDYDFLLSSDTDESIEVYKDKAKKLEAEVRREINNEKAEF---LTLLELI 71
Query: 120 DNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDM 179
DN+QRLG+ Y FE +I+R L R S + K +SL+A AL FRLLRQHGF+
Sbjct: 72 DNVQRLGLGYRFESDIRRALDRFV----SSGGFDGVTK--TSLHATALSFRLLRQHGFE- 124
Query: 180 HAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGIXXXXXXXXXXXXXXSNIFNEAINFTTT 239
V+ S F D+ G L +D K I NI +EA F +
Sbjct: 125 ------VSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEG-ENILDEARVFAIS 177
Query: 240 HLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAK 299
HLKE + + L+ V HALELPLH R RLEA W I+ Y++ D NQVL+ELA
Sbjct: 178 HLKELSEEKIGKE---LAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAI 234
Query: 300 LDFNAVQAEHQEELKYVSRWWRKTGLG-ELHFARDRIMENFFWALGEVWEPQFGYCRRMS 358
LD+N +Q+ +Q +L+ SRWWR+ GL +LHFARDR++E+F+WA+G +EPQ+ CR
Sbjct: 235 LDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSV 294
Query: 359 TKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMA 418
K + +T IDD+YDVYGTLDELELFT+AVERWDVNA++ LP YMKLCFL L+N+ NE+A
Sbjct: 295 AKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIA 354
Query: 419 FDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLH 478
+D LK +G +I+PYL KAWAD+C +FL EAKW + PT ++Y NAW S SGP+ L+
Sbjct: 355 YDNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIF 414
Query: 479 AYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHET 538
AY + KE ++ L++Y +II PS IFRL NDLA++S E+ RG+ ++ CYM
Sbjct: 415 AYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTK 474
Query: 539 GASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDG 598
G SE A E + +LI TW KMN E L + F+ AINLAR + CTY NGD
Sbjct: 475 GISEELATESVMNLIDETWKKMNK----EKLGGSLFAKPFVETAINLARQSHCTYHNGDA 530
Query: 599 HTIQHK-SKNRVLPLLVHPV 617
HT + ++ RVL ++ P+
Sbjct: 531 HTSPDELTRKRVLSVITEPI 550
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 468 bits (1204), Expect = e-132, Method: Compositional matrix adjust.
Identities = 239/546 (43%), Positives = 351/546 (64%), Gaps = 22/546 (4%)
Query: 60 RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIV 119
RRS NY PS W +++QSL ++Y + + R +L V++ LE + D + QLE++
Sbjct: 2 RRSGNYNPSRWDVNFIQSLLSDYKEDKHVIRASELVTLVKMELEKE----TDQIRQLELI 57
Query: 120 DNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDM 179
D+LQR+G+S HF++E K LS IY + + + KE E LY+ +L FRLLR+HGF
Sbjct: 58 DDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKE--ERDLYSTSLAFRLLREHGF-- 113
Query: 180 HAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGIXXXXXXXXXXXXXXSNIFNEAINFTTT 239
+VA F +E+G+ K L DD +G+ + + A F T
Sbjct: 114 -----QVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTL-ESAREFATK 167
Query: 240 HLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAK 299
L+E V N DG L T + ++L++PLHWR+ R A +I+ Y++ PD+N V++ELA
Sbjct: 168 FLEEKV--NEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAI 225
Query: 300 LDFNAVQAEHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWEPQFGYCRRMS 358
LD N VQA+ QEELK RWWR TG E L FARDR++E +FW G + Q R M
Sbjct: 226 LDLNIVQAQFQEELKESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMM 285
Query: 359 TKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMA 418
K NALIT IDD+YDVYGTL+ELE FT+ + RWD+N++DQLP YM+LCFL L+N ++ +
Sbjct: 286 GKVNALITVIDDIYDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTS 345
Query: 419 FDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLH 478
+DV+K++GV++IPYL+++W D+ +++EA+W+ G+ P+LEEY++N+W S+SGP +L H
Sbjct: 346 YDVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTH 405
Query: 479 AYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHET 538
+ + + TKE + L +Y +++RW S + RLA+DL TS +EV RGDVPK++QCYM +
Sbjct: 406 IFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDY 465
Query: 539 GASESDAREHIRDLITATWMKMNS-KDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGD 597
ASE++AR+H++ LI W KMN+ + ++P +FI A++L RMAQ Y NGD
Sbjct: 466 NASEAEARKHVKWLIAEVWKKMNAERVSKDSP----FGKDFIGCAVDLGRMAQLMYHNGD 521
Query: 598 GHTIQH 603
GH QH
Sbjct: 522 GHGTQH 527
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 455 bits (1171), Expect = e-128, Method: Compositional matrix adjust.
Identities = 249/559 (44%), Positives = 344/559 (61%), Gaps = 32/559 (5%)
Query: 61 RSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIVD 120
R+ YQP++W + +QS +EY E + R + +V++ML+ + VD++ +LE++D
Sbjct: 36 RTGGYQPTLWDFSTIQSFDSEYKEEKHLMRAAGMIDQVKMMLQEE----VDSIRRLELID 91
Query: 121 NLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMH 180
+L+RLG+S HFE EI L+ Y Y E E LY+ AL FRLLRQ+ F +
Sbjct: 92 DLRRLGISCHFEREIVEILNSKY--------YTNNEIDERDLYSTALRFRLLRQYDFSV- 142
Query: 181 AQDVRVAVGTLSLFMDEKGK-LKSCLGDDIKGIXXXXXXXXXXXXXXSNIFNEAINFTTT 239
+Q+V F + KG K L DD +G+ + A +F T
Sbjct: 143 SQEV------FDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETL-RLARDFATK 195
Query: 240 HLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAK 299
L++ V D D L + +E ALELP HWR+ AR FID Y+R PD+N ++ELAK
Sbjct: 196 FLQKRVL---VDKDINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAK 252
Query: 300 LDFNAVQAEHQEELKYVSRWWRKTGL-GELHFARDRIMENFFWALGEVWEPQFGYCRRMS 358
LDFN VQA+ Q+ELK SRWW TGL EL F RDRI+E ++W G V Q GY R M
Sbjct: 253 LDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIML 312
Query: 359 TKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMA 418
TK NAL+TTIDDV+D+YGTL+EL+LFT A++RWD+ +M QLP YM++C+L L N NEMA
Sbjct: 313 TKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMA 372
Query: 419 FDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLH 478
+D L+ +G PYL+K W + +S+L+EAKWY G+ P+LEEYM N+WIS+ G IL H
Sbjct: 373 YDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSH 432
Query: 479 AYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHET 538
+ + + +EA + + +Y +I+R I RLA+D+ TS DEV+RGDVPK++QCYM+E
Sbjct: 433 LFFRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEK 492
Query: 539 GASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQN-GD 597
ASE +AREH+R LI TW MN + + S F+ + NLARMAQ YQ+ D
Sbjct: 493 NASEEEAREHVRSLIDQTWKMMNKEMMTSS-----FSKYFVEVSANLARMAQWIYQHESD 547
Query: 598 GHTIQHKSKNRVL-PLLVH 615
G +QH N++L LL H
Sbjct: 548 GFGMQHSLVNKMLRDLLFH 566
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 439 bits (1128), Expect = e-123, Method: Compositional matrix adjust.
Identities = 241/564 (42%), Positives = 344/564 (60%), Gaps = 25/564 (4%)
Query: 60 RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIV 119
RRS NYQP++W +Y+QSL+ Y E + R +L +VR++L+ K ++ + QLE++
Sbjct: 6 RRSGNYQPALWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKEK----MEPVQQLELI 61
Query: 120 DNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDM 179
+L+ LG+S F+DEIK L IYNE +H E ++ LY AL FRLLRQHGF++
Sbjct: 62 HDLKYLGLSDFFQDEIKEILGVIYNEHKC---FHNNEVEKMDLYFTALGFRLLRQHGFNI 118
Query: 180 HAQDVRVAVGTLSLFMDEKG-KLKSCLGDDIKGIXXXXXXXXXXXXXXSNIFNEAINFTT 238
+QDV + F +EKG K+ L D KG+ + A F T
Sbjct: 119 -SQDV------FNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTL-ELAREFAT 170
Query: 239 THLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELA 298
L++ + N+ D L + H+L+LPLHWR+ +EARWFID Y R PD+N ++ ELA
Sbjct: 171 KCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELA 230
Query: 299 KLDFNAVQAEHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWEP-QFGYCRR 356
KL+FN +QA HQ+ELK +SRWW + E L F RDR++E+FFWA+G ++EP Q GY R+
Sbjct: 231 KLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVG-MFEPHQHGYQRK 289
Query: 357 MSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNE 416
M+ L T IDD+YDVYGTLDELELFT+ +RWD ++ +LPYYM+LC+ +HN ++
Sbjct: 290 MAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISD 349
Query: 417 MAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVIL 476
A+D+LK+ G + YL+K+ D+ +++ EAKWY SGY P+L+EY++ A ISV+ P I+
Sbjct: 350 AAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAII 409
Query: 477 LHAYTLIANPPTKEA-LQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYM 535
Y AN A + L +Y +I+ +I RL +DL TS E+ RGDVPK IQCYM
Sbjct: 410 SPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYM 469
Query: 536 HETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQN 595
ET ASE +A EH++ LI W MN+ P + + A N+ R+AQ Y +
Sbjct: 470 KETNASEEEAVEHVKFLIREAWKDMNTAIAAGYP----FPDGMVAGAANIGRVAQFIYLH 525
Query: 596 GDGHTIQH-KSKNRVLPLLVHPVS 618
GDG +QH K+ + LL P +
Sbjct: 526 GDGFGVQHSKTYEHIAGLLFEPYA 549
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 305 bits (782), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 189/564 (33%), Positives = 297/564 (52%), Gaps = 34/564 (6%)
Query: 60 RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIV 119
R A++ PS+WG +L + V E YAQ IE LK + R ML D L+ ++
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLADTLN---LI 71
Query: 120 DNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDM 179
D ++RLG+SYHFE EI L +IYN+ NS + L AL+FRLLRQHGF++
Sbjct: 72 DIIERLGISYHFEKEIDEILDQIYNQ-NSNCN---------DLCTSALQFRLLRQHGFNI 121
Query: 180 HAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGIXXXXXXXXXXXXXXSNIFNEAINFTTT 239
+ S F DE GK K L D+ G+ +I +A+ F+T
Sbjct: 122 SPE-------IFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHA-DDILEDALAFSTI 173
Query: 240 HLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFID-MYQRGPDVNQVLVELA 298
HL+ H + L V HALE LH + R+E R+FI +Y + N VL+ A
Sbjct: 174 HLESAAPHLKSP----LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFA 229
Query: 299 KLDFNAVQAEHQEELKYVSRWWRKTG-LGELHFARDRIMENFFWALGEVWEPQFGYCRRM 357
KLDFN +Q H++EL VSRWW+ + L +ARDR++E +FWALG +EPQ+ R M
Sbjct: 230 KLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVM 289
Query: 358 STKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEM 417
K ++I+ +DD +D YGT+ ELE +T+A++RWD+N +D+LP YMK+ + + + +
Sbjct: 290 LVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDY 349
Query: 418 AFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILL 477
++ HI+ + + ++ +++ +E+ W+ GY P + EY+ NA + + +
Sbjct: 350 EKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLAT 409
Query: 478 HAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHE 537
+Y L T++ ++L + P I+ +I R+ +D AT E RG + I+C M +
Sbjct: 410 TSY-LGMKSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRD 468
Query: 538 TGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTY-QNG 596
G S +A +++ W +N P +S F+ +NLAR+ + TY N
Sbjct: 469 YGISTKEAMAKFQNMAETAWKDINEGLLRPTP----VSTEFLTPILNLARIVEVTYIHNL 524
Query: 597 DGHTIQHKS-KNRVLPLLVHPVSL 619
DG+T K K ++ LLV + +
Sbjct: 525 DGYTHPEKVLKPHIINLLVDSIKI 548
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 305 bits (781), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 188/564 (33%), Positives = 298/564 (52%), Gaps = 34/564 (6%)
Query: 60 RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIV 119
R A++ PS+WG +L + V E YA+ IE LK + R ML + D L+ ++
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLN---LI 71
Query: 120 DNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDM 179
D ++RLG+SYHFE EI L +IYN+ NS + L AL+FRLLRQHGF++
Sbjct: 72 DTIERLGISYHFEKEIDDILDQIYNQ-NSNCN---------DLCTSALQFRLLRQHGFNI 121
Query: 180 HAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGIXXXXXXXXXXXXXXSNIFNEAINFTTT 239
+ S F DE GK K L D+ G+ +I +A+ F+T
Sbjct: 122 SPE-------IFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHA-DDILEDALAFSTI 173
Query: 240 HLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFID-MYQRGPDVNQVLVELA 298
HL+ H + L V HALE LH + R+E R+FI +Y + N VL+ A
Sbjct: 174 HLESAAPHLKSP----LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFA 229
Query: 299 KLDFNAVQAEHQEELKYVSRWWRKTG-LGELHFARDRIMENFFWALGEVWEPQFGYCRRM 357
KLDFN +Q H++EL VSRWW+ + L +ARDR++E +FWALG +EPQ+ R M
Sbjct: 230 KLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVM 289
Query: 358 STKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEM 417
K ++I+ +DD +D YGT+ ELE +T+A++RWD+N +D+LP YMK+ + + + +
Sbjct: 290 LVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDY 349
Query: 418 AFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILL 477
++ HI+ + + ++ +++ +E+ W+ GY P + EY+ NA + + +
Sbjct: 350 EKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLAT 409
Query: 478 HAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHE 537
+Y L T++ ++L + P I+ +I R+ +D AT E RG + I+C M +
Sbjct: 410 TSY-LGMKSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRD 468
Query: 538 TGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTY-QNG 596
G S +A +++ W +N P +S F+ +NLAR+ + TY N
Sbjct: 469 YGISTKEAMAKFQNMAETAWKDINEGLLRPTP----VSTEFLTPILNLARIVEVTYIHNL 524
Query: 597 DGHTIQHKS-KNRVLPLLVHPVSL 619
DG+T K K ++ LLV + +
Sbjct: 525 DGYTHPEKVLKPHIINLLVDSIKI 548
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 305 bits (780), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 191/579 (32%), Positives = 303/579 (52%), Gaps = 40/579 (6%)
Query: 51 SVCEKAISN------RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLEN 104
S+ A++N R A++ PS+WG +L V E YA+ IE LK + R ML
Sbjct: 2 SMASAAVANYEEEIVRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLA 61
Query: 105 KEVDYVDALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYA 164
+ D L+ ++D ++RLG+SYHFE EI L +IYN+ NS + L
Sbjct: 62 TGMKLADTLN---LIDTIERLGISYHFEKEIDDILDQIYNQ-NSNCN---------DLCT 108
Query: 165 VALEFRLLRQHGFDMHAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGIXXXXXXXXXXXX 224
AL+FRLLRQHGF++ + S F DE GK K L D+ G+
Sbjct: 109 SALQFRLLRQHGFNISPE-------IFSKFQDENGKFKESLASDVLGLLNLYEASHVRTH 161
Query: 225 XXSNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFID-M 283
+I +A+ F+T HL+ H + L V HALE LH + R+E R+FI +
Sbjct: 162 A-DDILEDALAFSTIHLESAAPHLKSP----LREQVTHALEQCLHKGVPRVETRFFISSI 216
Query: 284 YQRGPDVNQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTG-LGELHFARDRIMENFFWA 342
Y + N VL+ AKLDFN +Q H++EL VSRWW+ + L +ARDR++E +FWA
Sbjct: 217 YDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWA 276
Query: 343 LGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYY 402
LG +EPQ+ R M K ++I+ +DD +D YGT+ ELE +T+A++RWD+N +D+LP Y
Sbjct: 277 LGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDY 336
Query: 403 MKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEY 462
MK+ + + + + ++ HI+ + + ++ +++ +E+ W+ GY P + EY
Sbjct: 337 MKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEY 396
Query: 463 MDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEV 522
+ NA + + + +Y L T++ ++L + P I+ +I R+ +D AT E
Sbjct: 397 LSNALATTTYYYLATTSY-LGMKSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEK 455
Query: 523 KRGDVPKAIQCYMHETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFA 582
RG + I+C M + G S +A +++ W +N P +S F+
Sbjct: 456 SRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTP----VSTEFLTPI 511
Query: 583 INLARMAQCTY-QNGDGHTIQHKS-KNRVLPLLVHPVSL 619
+NLAR+ + TY N DG+T K K ++ LLV + +
Sbjct: 512 LNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 304 bits (778), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 187/564 (33%), Positives = 299/564 (53%), Gaps = 34/564 (6%)
Query: 60 RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIV 119
R A++ PS+WG +L + V E YA+ IE LK + R ML + D L+ ++
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLN---LI 71
Query: 120 DNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDM 179
D ++RLG+SYHFE EI L +IYN+ NS + L AL+FRLLRQHGF++
Sbjct: 72 DTIERLGISYHFEKEIDDILDQIYNQ-NSNCN---------DLCTSALQFRLLRQHGFNI 121
Query: 180 HAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGIXXXXXXXXXXXXXXSNIFNEAINFTTT 239
+ S F DE GK K L D+ G+ +I +A+ F+T
Sbjct: 122 SPE-------IFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHA-DDILEDALAFSTI 173
Query: 240 HLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFID-MYQRGPDVNQVLVELA 298
HL+ H + L V HALE LH + R+E R+FI +Y + N VL+ A
Sbjct: 174 HLESAAPHLKSP----LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFA 229
Query: 299 KLDFNAVQAEHQEELKYVSRWWRKTG-LGELHFARDRIMENFFWALGEVWEPQFGYCRRM 357
KLDFN +Q H++EL VSRWW+ + L +ARDR++E +FWALG +EPQ+ R M
Sbjct: 230 KLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVM 289
Query: 358 STKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEM 417
K ++I+ +DD +D YGT+ ELE +T+A++RWD+N +D+LP YMK+ + + + +
Sbjct: 290 LVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDY 349
Query: 418 AFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILL 477
++ HI+ + + ++ +++ +E+ W+ GY P + EY+ NA + + +
Sbjct: 350 EKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLAT 409
Query: 478 HAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHE 537
+Y L T++ ++L + P I+ +I+R+ +D AT E RG + I+C M +
Sbjct: 410 TSY-LGMKSATEQDFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRD 468
Query: 538 TGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTY-QNG 596
G S +A +++ W +N P +S F+ +NLAR+ + TY N
Sbjct: 469 YGISTKEAMAKFQNMAETAWKDINEGLLRPTP----VSTEFLTPILNLARIVEVTYIHNL 524
Query: 597 DGHT-IQHKSKNRVLPLLVHPVSL 619
DG+T + K ++ LLV + +
Sbjct: 525 DGYTHPEEVLKPHIINLLVDSIKI 548
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 304 bits (778), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 188/564 (33%), Positives = 297/564 (52%), Gaps = 34/564 (6%)
Query: 60 RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIV 119
R A++ PS+WG +L V E YA+ IE LK + R ML + D L+ ++
Sbjct: 2 RPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLN---LI 58
Query: 120 DNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDM 179
D ++RLG+SYHFE EI L +IYN+ NS + L AL+FRLLRQHGF++
Sbjct: 59 DTIERLGISYHFEKEIDDILDQIYNQ-NSNCN---------DLCTSALQFRLLRQHGFNI 108
Query: 180 HAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGIXXXXXXXXXXXXXXSNIFNEAINFTTT 239
+ S F DE GK K L D+ G+ +I +A+ F+T
Sbjct: 109 SPE-------IFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHA-DDILEDALAFSTI 160
Query: 240 HLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFID-MYQRGPDVNQVLVELA 298
HL+ H + L V HALE LH + R+E R+FI +Y + N VL+ A
Sbjct: 161 HLESAAPHLKSP----LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFA 216
Query: 299 KLDFNAVQAEHQEELKYVSRWWRKTG-LGELHFARDRIMENFFWALGEVWEPQFGYCRRM 357
KLDFN +Q H++EL VSRWW+ + L +ARDR++E +FWALG +EPQ+ R M
Sbjct: 217 KLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVM 276
Query: 358 STKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEM 417
K ++I+ +DD +D YGT+ ELE +T+A++RWD+N +D+LP YMK+ + + + +
Sbjct: 277 LVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDY 336
Query: 418 AFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILL 477
++ HI+ + + ++ +++ +E+ W+ GY P + EY+ NA + + +
Sbjct: 337 EKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLAT 396
Query: 478 HAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHE 537
+Y L T++ ++L + P I+ +I R+ +D AT E RG + I+C M +
Sbjct: 397 TSY-LGMKSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRD 455
Query: 538 TGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTY-QNG 596
G S +A +++ W +N P +S F+ +NLAR+ + TY N
Sbjct: 456 YGISTKEAMAKFQNMAETAWKDINEGLLRPTP----VSTEFLTPILNLARIVEVTYIHNL 511
Query: 597 DGHTIQHKS-KNRVLPLLVHPVSL 619
DG+T K K ++ LLV + +
Sbjct: 512 DGYTHPEKVLKPHIINLLVDSIKI 535
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 303 bits (777), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 188/564 (33%), Positives = 297/564 (52%), Gaps = 34/564 (6%)
Query: 60 RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIV 119
R A++ PS+WG +L + V E YAQ IE LK + R ML D L+ ++
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLADTLN---LI 71
Query: 120 DNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDM 179
D ++RLG+SYHFE EI L +IYN+ NS + L AL+FRLLRQHGF++
Sbjct: 72 DIIERLGISYHFEKEIDEILDQIYNQ-NSNCN---------DLCTSALQFRLLRQHGFNI 121
Query: 180 HAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGIXXXXXXXXXXXXXXSNIFNEAINFTTT 239
+ S F DE GK K L D+ G+ +I +A+ F+T
Sbjct: 122 SPE-------IFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHA-DDILEDALAFSTI 173
Query: 240 HLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFID-MYQRGPDVNQVLVELA 298
HL+ H + L V HALE LH + R+E R+FI +Y + N VL+ A
Sbjct: 174 HLESAAPHLKSP----LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFA 229
Query: 299 KLDFNAVQAEHQEELKYVSRWWRKTG-LGELHFARDRIMENFFWALGEVWEPQFGYCRRM 357
KLDFN +Q H++EL VSRWW+ + L +ARDR++E +FWALG +EPQ+ R M
Sbjct: 230 KLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVM 289
Query: 358 STKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEM 417
K ++I+ +DD +D YGT+ ELE +T+A++RWD+N +D+LP YMK+ + + + +
Sbjct: 290 LVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDY 349
Query: 418 AFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILL 477
++ HI+ + + ++ +++ +E+ W+ GY P + EY+ NA + + +
Sbjct: 350 EKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLAT 409
Query: 478 HAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHE 537
+Y L T++ ++L + P I+ +I R+ +D AT E RG + I+C M +
Sbjct: 410 TSY-LGMKSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRD 468
Query: 538 TGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTY-QNG 596
G S +A +++ W +N P +S F+ +NLAR+ + TY N
Sbjct: 469 YGISTKEAMAKFQNMAETAWKDINEGLLRPTP----VSTEFLTPILNLARIVEVTYIHNL 524
Query: 597 DGHT-IQHKSKNRVLPLLVHPVSL 619
DG+T + K ++ LLV + +
Sbjct: 525 DGYTHPEEVLKPHIINLLVDSIKI 548
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 303 bits (775), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 190/579 (32%), Positives = 303/579 (52%), Gaps = 40/579 (6%)
Query: 51 SVCEKAISN------RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLEN 104
S+ A++N R A++ PS+WG +L V E YA+ IE LK + R ML
Sbjct: 2 SMASAAVANYEEEIVRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLA 61
Query: 105 KEVDYVDALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYA 164
+ D L+ ++D ++RLG+SYHFE EI L +IYN+ NS + L
Sbjct: 62 TGMKLADTLN---LIDTIERLGISYHFEKEIDDILDQIYNQ-NSNCN---------DLCT 108
Query: 165 VALEFRLLRQHGFDMHAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGIXXXXXXXXXXXX 224
AL+FRLLRQHGF++ + S F DE GK K L D+ G+
Sbjct: 109 SALQFRLLRQHGFNISPE-------IFSKFQDENGKFKESLASDVLGLLNLYEASHVRTH 161
Query: 225 XXSNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFID-M 283
+I +A+ F+T HL+ H + L V HALE LH + R+E R+FI +
Sbjct: 162 A-DDILEDALAFSTIHLESAAPHLKSP----LREQVTHALEQCLHKGVPRVETRFFISSI 216
Query: 284 YQRGPDVNQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTG-LGELHFARDRIMENFFWA 342
Y + N VL+ AKLDFN +Q H++EL VSRWW+ + L +ARDR++E +FW
Sbjct: 217 YDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWT 276
Query: 343 LGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYY 402
LG +EPQ+ R M K ++I+ +DD +D YGT+ ELE +T+A++RWD+N +D+LP Y
Sbjct: 277 LGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDY 336
Query: 403 MKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEY 462
MK+ + + + + ++ HI+ + + ++ +++ +E+ W+ GY P + EY
Sbjct: 337 MKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEY 396
Query: 463 MDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEV 522
+ NA + + ++ +Y L T++ ++L + P I+ +I R+ +D AT E
Sbjct: 397 LSNALATTTYYLLATTSY-LGMKSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEK 455
Query: 523 KRGDVPKAIQCYMHETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFA 582
RG + I+C M + G S +A +++ W +N P +S F+
Sbjct: 456 SRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTP----VSTEFLTPI 511
Query: 583 INLARMAQCTY-QNGDGHTIQHKS-KNRVLPLLVHPVSL 619
+NLAR+ + TY N DG+T K K ++ LLV + +
Sbjct: 512 LNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 302 bits (774), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 183/564 (32%), Positives = 299/564 (53%), Gaps = 35/564 (6%)
Query: 60 RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIV 119
R A++QPS+WG D + ++ + +R ++LK EVR M+ ++ +L +
Sbjct: 22 RPKADFQPSIWG-DLFLNCPDKNIDAETEKRHQQLKEEVRKMIV---APMANSTQKLAFI 77
Query: 120 DNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDM 179
D++QRLGVSYHF EI+ L IY+ N E+ LY ++ FRLLR+HG++
Sbjct: 78 DSVQRLGVSYHFTKEIEDELENIYHNNND---------AENDLYTTSIRFRLLREHGYN- 127
Query: 180 HAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGIXXXXXXXXXXXXXXSNIFNEAINFTTT 239
V+ + F DE+G KS + D++G+ +I +EAI+FTT
Sbjct: 128 ------VSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHG-EDILDEAISFTTH 180
Query: 240 HLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAK 299
HL V D LS V HAL+ + + R+EAR ++ +YQ N+ L+E AK
Sbjct: 181 HLSLAVASL----DHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAK 236
Query: 300 LDFNAVQAEHQEELKYVSRWWRKTGLG-ELHFARDRIMENFFWALGEVWEPQFGYCRRMS 358
+DFN +Q H++EL + RWW+ +L +ARDR++E +FW G +EPQ+ R+M
Sbjct: 237 IDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKML 296
Query: 359 TKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMA 418
TK A+ + +DD YD Y T +EL +TNA+ERWD+ +D++P YMK + L + EM
Sbjct: 297 TKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMV 356
Query: 419 FDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLH 478
V + + + Y K A + +S+L+EAKW Y P+ EE+ NA + ++ +
Sbjct: 357 QLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAIT 416
Query: 479 AYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHET 538
++ + + T E ++ P II+ ++I R +D+A + +R D AI+CYM E
Sbjct: 417 SFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEY 476
Query: 539 GASESDAREHIRDLITATWMKMNSK--DGDENPDHLLLSNNFIRFAINLARMAQCTYQNG 596
G + +A + + + W +N + E P +L ++NLAR+ Y+ G
Sbjct: 477 GVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVL------NRSLNLARVMDVLYREG 530
Query: 597 DGHT-IQHKSKNRVLPLLVHPVSL 619
DG+T + +K + LL+ P++L
Sbjct: 531 DGYTYVGKAAKGGITSLLIEPIAL 554
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 300 bits (767), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 186/564 (32%), Positives = 298/564 (52%), Gaps = 34/564 (6%)
Query: 60 RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIV 119
R A++ PS+WG +L + V E YA+ IE LK + R ML + D L+ ++
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLN---LI 71
Query: 120 DNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDM 179
D ++RLG+SYHFE EI L +IYN+ NS + L AL+FRLLRQHGF++
Sbjct: 72 DTIERLGISYHFEKEIDDILDQIYNQ-NSNCN---------DLCTSALQFRLLRQHGFNI 121
Query: 180 HAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGIXXXXXXXXXXXXXXSNIFNEAINFTTT 239
+ S F DE GK K L D+ G+ +I +A+ F+T
Sbjct: 122 SPE-------IFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHA-DDILEDALAFSTI 173
Query: 240 HLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFID-MYQRGPDVNQVLVELA 298
HL+ H + L V HALE LH + R+E R+FI +Y + N VL+ A
Sbjct: 174 HLESAAPHLKSP----LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFA 229
Query: 299 KLDFNAVQAEHQEELKYVSRWWRKTG-LGELHFARDRIMENFFWALGEVWEPQFGYCRRM 357
KLDFN +Q H++EL VSRWW+ + L +ARDR++E +F ALG +EPQ+ R M
Sbjct: 230 KLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVM 289
Query: 358 STKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEM 417
K ++I+ +DD +D YGT+ ELE +T+A++RWD+N +D+LP YMK+ + + + +
Sbjct: 290 LVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDY 349
Query: 418 AFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILL 477
++ HI+ + + ++ +++ +E+ W+ GY P + EY+ NA + + +
Sbjct: 350 EKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLAT 409
Query: 478 HAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHE 537
+Y L T++ ++L + P I+ +I+R+ +D AT E RG + I+C M +
Sbjct: 410 TSY-LGMKSATEQDFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRD 468
Query: 538 TGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTY-QNG 596
G S +A +++ W +N P +S F+ +NLAR+ + TY N
Sbjct: 469 YGISTKEAMAKFQNMAETAWKDINEGLLRPTP----VSTEFLTPILNLARIVEVTYIHNL 524
Query: 597 DGHT-IQHKSKNRVLPLLVHPVSL 619
DG+T + K ++ LLV + +
Sbjct: 525 DGYTHPEEVLKPHIINLLVDSIKI 548
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 299 bits (765), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 186/564 (32%), Positives = 297/564 (52%), Gaps = 34/564 (6%)
Query: 60 RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIV 119
R A++ PS+WG +L + V E YA+ IE LK + R ML + D L+ ++
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLN---LI 71
Query: 120 DNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDM 179
D ++RLG+SYHFE EI L +IYN+ NS + L AL+FRLLRQHGF++
Sbjct: 72 DTIERLGISYHFEKEIDDILDQIYNQ-NSNCN---------DLCTSALQFRLLRQHGFNI 121
Query: 180 HAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGIXXXXXXXXXXXXXXSNIFNEAINFTTT 239
+ S F DE GK K L D+ G+ +I +A+ F+T
Sbjct: 122 SPE-------IFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHA-DDILEDALAFSTI 173
Query: 240 HLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFID-MYQRGPDVNQVLVELA 298
HL+ H + L V HALE LH + R+E R+FI +Y + N VL+ A
Sbjct: 174 HLESAAPHLKSP----LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFA 229
Query: 299 KLDFNAVQAEHQEELKYVSRWWRKTG-LGELHFARDRIMENFFWALGEVWEPQFGYCRRM 357
KLDFN +Q H++EL VSRWW+ + L +ARDR++E +F ALG +EPQ+ R M
Sbjct: 230 KLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVM 289
Query: 358 STKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEM 417
K ++I+ +DD +D YGT+ ELE +T+A++RWD+N +D+LP YMK+ + + + +
Sbjct: 290 LVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDY 349
Query: 418 AFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILL 477
++ HI+ + + ++ +++ +E+ W+ GY P + EY+ NA + + +
Sbjct: 350 EKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLAT 409
Query: 478 HAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHE 537
+Y L T++ ++L + P I+ +I R+ +D AT E RG + I+C M +
Sbjct: 410 TSY-LGMKSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRD 468
Query: 538 TGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTY-QNG 596
G S +A +++ W +N P +S F+ +NLAR+ + TY N
Sbjct: 469 YGISTKEAMAKFQNMAETAWKDINEGLLRPTP----VSTEFLTPILNLARIVEVTYIHNL 524
Query: 597 DGHT-IQHKSKNRVLPLLVHPVSL 619
DG+T + K ++ LLV + +
Sbjct: 525 DGYTHPEEVLKPHIINLLVDSIKI 548
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 270 bits (690), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 164/532 (30%), Positives = 276/532 (51%), Gaps = 37/532 (6%)
Query: 110 VDALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEF 169
+D +L VD ++RLG+ HF++EIK L +Y+ + R A+E + A+
Sbjct: 268 LDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGL 327
Query: 170 RLLRQHGFDMHAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGIXXXXXXXXXXXXX--XS 227
R+LR HG++ V+ L F DE G+ LG +G+
Sbjct: 328 RILRLHGYN-------VSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGE 380
Query: 228 NIFNEAINFTTTHLKEYVKHNNNDDD----GYLSTLVEHALELPLHWRMVRLEARWFIDM 283
I EA T +L+ +++ + D + VE+AL+ P H M RLEAR +I+
Sbjct: 381 TIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIEN 440
Query: 284 YQRGPD--------------VNQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLGELH 329
Y GPD N+ +ELAKLDFN VQ+ HQ EL+ + RWW+ +G +L+
Sbjct: 441 Y--GPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGFTDLN 498
Query: 330 FARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVE 389
F R+R+ E +F ++EP+F CR + TK + +DD+YD +G+LD+L+LFT +V+
Sbjct: 499 FTRERVTEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVK 558
Query: 390 RWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAK 449
RWD++ +DQ+P MK+CF+ +N+ N++A + ++QG ++ Y++ W +++ EA+
Sbjct: 559 RWDLSLVDQMPQQMKICFVGFYNTFNDIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAE 618
Query: 450 WYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIF 509
W + Y+P+ EY++NA +S++ ++L + T E L ++ ++ +
Sbjct: 619 WSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSKIDRESRFLQLMGLTG 678
Query: 510 RLANDLATSSDEVKRGDVPKAIQCYMHE-TGASESDAREHIRDLITATWMKMNSKDGDEN 568
RL ND T E +G+V AIQCYM + SE +A +H+ ++ ++N + +
Sbjct: 679 RLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVNNK 738
Query: 569 PDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQH--KSKNRVLPLLVHPVS 618
+ + + R AR+ Q Y GDG T+ H + K V L PV+
Sbjct: 739 -----IPDIYKRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPVA 785
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 269 bits (687), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 171/536 (31%), Positives = 279/536 (52%), Gaps = 40/536 (7%)
Query: 110 VDALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEF 169
VD L +L IVDN+ RLG+ HFE EIK L +Y N R + + L AL F
Sbjct: 296 VDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGF 355
Query: 170 RLLRQHGFDMHAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGIXXXXXXXXXXXXXX--S 227
RLLR H ++ V+ F D GK G K +
Sbjct: 356 RLLRLHRYN-------VSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGE 408
Query: 228 NIFNEAINFTTTHLKEYVKHNNN----DDDGYLSTLVEHALELPLHWRMVRLEARWFIDM 283
NI +EA +F T +L+E ++ + ++ LS +++AL+ H + R+EA+ + +
Sbjct: 409 NILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQV 468
Query: 284 YQRGPDV--------------NQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLGELH 329
Y+ PD N+ +EL KLDFN +Q+ HQEE+K V+ W+R +GL
Sbjct: 469 YR--PDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGLPLFT 526
Query: 330 FARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVE 389
FAR+R +E +F +EPQ+ CR + TK L T +DD+YD YGTLDEL+LFT AV
Sbjct: 527 FARERPLEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVR 586
Query: 390 RWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAK 449
RWD++ + LP YMKLC+ + ++ +E+A++ K+QG ++ + +K W D + EA+
Sbjct: 587 RWDLSFTENLPDYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAE 646
Query: 450 WYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLI-ANPPTKEALQFLEEYPN---IIRWP 505
W ++ Y+PTL+EY+ N S+ ++LL ++ ++EAL+ + +YP +
Sbjct: 647 WLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEKV-DYPGRRVLTELN 705
Query: 506 SMIFRLANDLATSSDEVKRGDVPKAIQCYMHE-TGASESDAREHIRDLITATWMKMNSKD 564
S+I RLA+D T E RG++ +I+CYM + +E +A +HI ++ ++ +
Sbjct: 706 SLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTRE- 764
Query: 565 GDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQH-KSKNRVLPLLVHPVSL 619
PD + + + F R+ +++GDG + + K+ + L+ P+ L
Sbjct: 765 -FLKPDDVPFACKKMLF--EETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 42 VQCTAANATSVCEKAISN---RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEV 98
V + ++ VC+ + ++ RR+AN P++WGYD + SL + Y+ SY +R E L E+
Sbjct: 4 VSAVSKVSSLVCDLSSTSGLIRRTANPHPNVWGYDLVHSLKSPYIDSSYRERAEVLVSEI 63
Query: 99 RLML 102
+ ML
Sbjct: 64 KAML 67
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 236 bits (601), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 157/527 (29%), Positives = 259/527 (49%), Gaps = 31/527 (5%)
Query: 110 VDALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEF 169
+D L +L +VDN++ LG+ HF+ EIK L +Y + R ++ L AL
Sbjct: 244 IDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGL 303
Query: 170 RLLRQHGFDMHAQDVRVAVGTLSLFMDEKGKLKSCLGD---DIKGIXXXXXXXXXXXXXX 226
R LR HG++ V+ L+ F DE G+ S G +++ +
Sbjct: 304 RTLRMHGYN-------VSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDE 356
Query: 227 SNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQ- 285
+ ++A F +L+E + + + +E+ +E P H + RLEAR +ID Y
Sbjct: 357 RAM-DDARKFAEPYLREALATKISTNTKLFKE-IEYVVEYPWHMSIPRLEARSYIDSYDD 414
Query: 286 ----------RGPDV-NQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLGELHFARDR 334
R P + N +ELAKLDFN VQ+ HQEELK ++RWW+++G+ +++F R R
Sbjct: 415 NYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMADINFTRHR 474
Query: 335 IMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVN 394
+ E +F + +EP++ R TK L DD+ D++ TLDEL+ FT V+RWD +
Sbjct: 475 VAEVYFSS--ATFEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTS 532
Query: 395 AMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSG 454
+ ++P M+ CF V E+ DV+K QG ++ +++K W ++ E +W +G
Sbjct: 533 LLHEIPECMQTCFKVWFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAG 592
Query: 455 YIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLAND 514
YIPT EEY+ ISV L L+ + ++ + N+ S+ +RL ND
Sbjct: 593 YIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTND 652
Query: 515 LATSSDEVKRGDVPKAIQCYMHET-GASESDAREHIRDLITATWMKMNSKDGDENPDHLL 573
T E RG I CYM + GA+E DA +HI ++ + + + + D +
Sbjct: 653 TKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPM 712
Query: 574 LSNNFIRFAINLARMAQCTYQNGDGHTIQHKS-KNRVLPLLVHPVSL 619
+FI NL Q Y+ DG+ I ++ K+ + + + P+ +
Sbjct: 713 GCKSFI---FNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPIQV 756
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 136/323 (42%), Gaps = 34/323 (10%)
Query: 65 YQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIVDNLQR 124
+ PS + ++Q+ + +E +++ G V V VD + IVD LQR
Sbjct: 205 FSPSSTAFAFMQT-RDSNCLEYLRNAVKRFNGGV------PNVFPVDLFEHIWIVDRLQR 257
Query: 125 LGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQDV 184
LG+S +FE+EIK L ++ A+ + A+ FRLLRQHG+ + A
Sbjct: 258 LGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVSADVF 317
Query: 185 RVAVGTLSLFMDEKGKLKSCLGDDIKGIXXXXXXXXXXXXX--XSNIFNEAINFTTTHLK 242
+ +++G+ +G + + I A F+ +L
Sbjct: 318 KN--------FEKEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLL 369
Query: 243 EYVKHNNNDDDGY----LSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDV-------- 290
E + D L + ALE+P + + R+E R++ID Y DV
Sbjct: 370 EKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYR 429
Query: 291 -----NQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLGELHFARDRIMENFFWALGE 345
N +ELAK D+N QA+HQ E +W+ + L E R ++E ++ A
Sbjct: 430 MPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEENRLSEWGVRRSELLECYYLAAAT 489
Query: 346 VWEPQFGYCRRMSTKANALITTI 368
++E + + R + K++ L+ I
Sbjct: 490 IFESERSHERMVWAKSSVLVKAI 512
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 325 LGELHFARDRIME---NFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDEL 381
L EL R+++ F +L ++ GY N L + V+D +L EL
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY--------NELQSLPKGVFDKLTSLKEL 162
Query: 382 ELFTNAVERWDVNAMDQLPYYMKLCFLVLHNS----TNEMAFDVLKKQGVHIIPYLKKAW 437
L+ N ++R A D+L +L L L N+ E AFD L+K + ++ + W
Sbjct: 163 RLYNNQLKRVPEGAFDKL---TELKTLKLDNNQLKRVPEGAFDSLEK--LKMLQLQENPW 217
Query: 438 ADMCKSFLLEAKW 450
C + AKW
Sbjct: 218 DCTCNGIIYMAKW 230
>pdb|2OH1|A Chain A, Crystal Structure Of Acetyltransferase Gnat Family
(Yp_013287.1) From Listeria Monocytogenes 4b F2365 At
1.46 A Resolution
pdb|2OH1|B Chain B, Crystal Structure Of Acetyltransferase Gnat Family
(Yp_013287.1) From Listeria Monocytogenes 4b F2365 At
1.46 A Resolution
pdb|2OH1|C Chain C, Crystal Structure Of Acetyltransferase Gnat Family
(Yp_013287.1) From Listeria Monocytogenes 4b F2365 At
1.46 A Resolution
pdb|2OH1|D Chain D, Crystal Structure Of Acetyltransferase Gnat Family
(Yp_013287.1) From Listeria Monocytogenes 4b F2365 At
1.46 A Resolution
Length = 179
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 175 HGFDMHAQDVRVAVGTLSLFMDEKGKLKSC 204
HGFD+H + R+ +G ++LF E G L
Sbjct: 51 HGFDVHNIEQRIELGEVALFETEAGALAGA 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,197,718
Number of Sequences: 62578
Number of extensions: 739817
Number of successful extensions: 1933
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1799
Number of HSP's gapped (non-prelim): 26
length of query: 622
length of database: 14,973,337
effective HSP length: 105
effective length of query: 517
effective length of database: 8,402,647
effective search space: 4344168499
effective search space used: 4344168499
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)