Query 006994
Match_columns 622
No_of_seqs 252 out of 894
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 17:26:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006994.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006994hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00684 Terpene_cyclase_plant_ 100.0 2E-151 4E-156 1271.9 52.0 536 60-616 1-542 (542)
2 PLN02279 ent-kaur-16-ene synth 100.0 1E-138 3E-143 1191.3 48.6 514 88-621 245-780 (784)
3 PLN02592 ent-copalyl diphospha 100.0 4E-115 8E-120 993.2 44.6 479 88-618 285-800 (800)
4 PF01397 Terpene_synth: Terpen 100.0 6.3E-55 1.4E-59 423.8 17.3 177 70-264 1-183 (183)
5 PF03936 Terpene_synth_C: Terp 100.0 2.3E-47 5E-52 391.1 19.3 268 294-561 1-270 (270)
6 cd00868 Terpene_cyclase_C1 Ter 100.0 6.8E-45 1.5E-49 375.5 27.9 282 308-593 1-284 (284)
7 cd00687 Terpene_cyclase_nonpla 100.0 3.6E-32 7.9E-37 284.7 18.8 245 315-564 18-265 (303)
8 PLN02150 terpene synthase/cycl 100.0 5E-30 1.1E-34 224.7 9.0 94 522-619 1-96 (96)
9 cd00385 Isoprenoid_Biosyn_C1 I 99.8 3.9E-20 8.4E-25 182.5 11.4 229 341-587 2-243 (243)
10 PF06330 TRI5: Trichodiene syn 97.5 0.0008 1.7E-08 72.3 11.7 194 349-564 79-277 (376)
11 cd00686 Terpene_cyclase_cis_tr 97.3 0.0022 4.9E-08 67.9 11.9 188 357-567 88-279 (357)
12 cd00867 Trans_IPPS Trans-Isopr 88.6 6.9 0.00015 39.2 12.5 119 429-563 86-215 (236)
13 TIGR03464 HpnC squalene syntha 83.4 30 0.00066 35.8 14.4 119 337-481 6-129 (266)
14 PF00494 SQS_PSY: Squalene/phy 80.5 17 0.00036 37.4 11.1 193 338-562 7-217 (267)
15 cd00683 Trans_IPPS_HH Trans-Is 79.6 36 0.00078 35.1 13.3 119 338-481 13-136 (265)
16 TIGR03465 HpnD squalene syntha 74.4 83 0.0018 32.5 14.3 118 338-481 7-128 (266)
17 PLN02632 phytoene synthase 68.7 1E+02 0.0022 33.3 13.8 107 354-482 74-184 (334)
18 cd00685 Trans_IPPS_HT Trans-Is 66.2 63 0.0014 33.2 11.2 121 428-562 108-239 (259)
19 TIGR02749 prenyl_cyano solanes 65.2 1.4E+02 0.003 32.0 13.9 89 428-520 133-221 (322)
20 PLN02857 octaprenyl-diphosphat 61.5 84 0.0018 35.1 11.7 88 428-520 227-315 (416)
21 PLN02890 geranyl diphosphate s 54.5 1.8E+02 0.004 32.6 12.8 89 428-521 227-316 (422)
22 COG0142 IspA Geranylgeranyl py 53.7 3.1E+02 0.0067 29.4 14.9 106 428-540 134-251 (322)
23 TIGR02748 GerC3_HepT heptapren 45.4 4.1E+02 0.0088 28.4 13.4 87 428-520 129-217 (319)
24 KOG1719 Dual specificity phosp 45.2 15 0.00033 35.4 2.2 30 523-552 119-149 (183)
25 PF10776 DUF2600: Protein of u 44.5 3.9E+02 0.0086 29.0 12.8 95 483-598 202-296 (330)
26 COG3707 AmiR Response regulato 40.2 21 0.00044 35.6 2.3 42 511-552 130-172 (194)
27 CHL00151 preA prenyl transfera 39.1 5.1E+02 0.011 27.7 13.2 87 429-520 135-222 (323)
28 PF03861 ANTAR: ANTAR domain; 36.4 24 0.00052 27.7 1.8 28 527-554 15-42 (56)
29 TIGR01507 hopene_cyclase squal 30.1 2.5E+02 0.0054 33.2 9.5 117 115-238 454-587 (635)
30 PF12368 DUF3650: Protein of u 29.8 35 0.00076 23.4 1.4 18 533-550 9-26 (28)
31 KOG3951 Uncharacterized conser 25.3 1.3E+02 0.0027 31.4 5.1 58 195-265 263-320 (321)
32 PF03578 HGWP: HGWP repeat; I 24.4 26 0.00056 24.0 0.1 19 171-191 8-26 (28)
33 COG3750 Uncharacterized protei 22.4 77 0.0017 27.0 2.5 63 118-219 19-81 (85)
34 COG4738 Predicted transcriptio 21.5 2.9E+02 0.0063 25.4 6.1 83 116-216 14-101 (124)
35 PRK10581 geranyltranstransfera 21.3 6.9E+02 0.015 26.5 10.1 113 438-562 152-276 (299)
36 PF06603 UpxZ: UpxZ family of 21.1 1E+02 0.0022 27.8 3.1 61 500-562 26-90 (106)
37 smart00463 SMR Small MutS-rela 20.8 1.1E+02 0.0025 25.3 3.3 23 538-560 7-29 (80)
38 COG5123 TOA2 Transcription ini 20.7 75 0.0016 28.3 2.2 42 209-264 1-42 (113)
No 1
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=1.8e-151 Score=1271.88 Aligned_cols=536 Identities=49% Similarity=0.822 Sum_probs=511.5
Q ss_pred CCCCCCCCCCCCcCccccCCchhhhh-HHHHHHHHHHHHHHHHhhcc--cccccChhhhHHHHHHHHHhCCccccHHHHH
Q 006994 60 RRSANYQPSMWGYDYLQSLSNEYVVE-SYAQRIEKLKGEVRLMLENK--EVDYVDALHQLEIVDNLQRLGVSYHFEDEIK 136 (622)
Q Consensus 60 r~~~~~~ps~w~~~fl~~~~~~~~~~-~~~~~~~~lk~~v~~~l~~~--~~~~~~~~~~L~lID~lqRLGi~~hF~~EI~ 136 (622)
|++++||||+|||+|+++++.++... .+.+++++||++||+|+... + .|++++|++||+||||||+|||++||+
T Consensus 1 r~~~~~~~~~w~~~~~~s~~~~~~~~~~~~~~~~~lk~~v~~~~~~~~~~---~~~~~~l~liD~lqrLGi~~hF~~EI~ 77 (542)
T cd00684 1 RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDSEYP---VDLFERLWLIDRLQRLGISYHFEDEIK 77 (542)
T ss_pred CCCCCCCCCcCCCcceeecCCCcchhHHHHHHHHHHHHHHHHHHHhcccC---CCHHHHHHHHHHHHHcCchhhhHHHHH
Confidence 78899999999995555544444333 78999999999999999863 3 699999999999999999999999999
Q ss_pred HHHHHHHhhcCCCccccccccccCChHHHHHHHHHHHhcCcccccccccccccccccccccccccccccccchHHHHHHH
Q 006994 137 RFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGILALY 216 (622)
Q Consensus 137 ~~L~~i~~~~~~~~~~~~r~~~~~dl~~tal~FRLLR~hGy~vS~~d~~~~~~vf~~F~d~~G~F~~~l~~dv~glL~Ly 216 (622)
++|++||++|.+.+ +....||++|||+|||||||||+||| | ||++|||++|+|++++.+||+||||||
T Consensus 78 ~~L~~i~~~~~~~~-----~~~~~dl~~~al~FRlLR~~Gy~vs~-d------vf~~F~~~~g~f~~~~~~d~~g~l~Ly 145 (542)
T cd00684 78 EILDYIYRYWTERG-----ESNEDDLYTTALGFRLLRQHGYNVSS-D------VFKKFKDEDGKFKESLTQDVKGMLSLY 145 (542)
T ss_pred HHHHHHHHhhcccc-----cccCCCHHHHHHHHHHHHHcCCCcCH-H------HHhhhcCCCCCcCchhhhhhHHHHHHH
Confidence 99999999886543 12367999999999999999999999 9 999999999999999999999999999
Q ss_pred HhhhhcCcccHHHHHHHHHHhHHHHHHHHhcCCCCCCCcHHHHHHHHccCCcccccchHHHHHHHHHhcCCCCCcHHHHH
Q 006994 217 EAAYLLVEEESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVE 296 (622)
Q Consensus 217 eAs~l~~~gE~~iLdeA~~Ft~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~Rlear~yI~~Y~~~~~~n~~lLe 296 (622)
|||||+|||| +|||||++||++||++.++++ +.++++|+++|++||++|||+++||||||+||++|++++++|++|||
T Consensus 146 ~As~l~~~gE-~iLdeA~~ft~~~L~~~~~~~-~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~lLe 223 (542)
T cd00684 146 EASHLSFPGE-DILDEALSFTTKHLEEKLESN-WIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLE 223 (542)
T ss_pred HHhhcCCCCc-HHHHHHHHHHHHHHHHHhhcc-CCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCCccccHHHHH
Confidence 9999999999 999999999999999999764 55789999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHhHHHHHHHHHHHhhcCCCC-cchhhhhhhHhHHHHhccccCCCccchhhhhhhchhhhhhhhcccccC
Q 006994 297 LAKLDFNAVQAEHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVY 375 (622)
Q Consensus 297 lAklDFn~~Q~~hq~El~~lsrWwk~l~l~~-l~faRdRlve~Yfwa~a~~fEP~~s~~Ri~laK~~~li~iiDD~fD~y 375 (622)
|||||||+||++||+||++++|||+++||.+ |||+|+|+++||||++|++|||++|.+|+++||+++|++++||+||.|
T Consensus 224 lAkldfn~~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~ 303 (542)
T cd00684 224 LAKLDFNILQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVY 303 (542)
T ss_pred HHHHHHHHHhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccC
Confidence 9999999999999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhcCccccccCChhhHHHHHHHhhhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhhcCC
Q 006994 376 GTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGY 455 (622)
Q Consensus 376 gt~eEl~~ft~ai~rWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~ 455 (622)
||.||++.||+||+|||.++++++|+|||+||.+|++++++++.++.+.+|++++.|++++|+++++||++||+|+++||
T Consensus 304 gt~eEl~~ft~ai~rwd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~ 383 (542)
T cd00684 304 GTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGY 383 (542)
T ss_pred CCHHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHhhhhhccccchHHHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCcccchhhhhcCCCccchhhhh
Q 006994 456 IPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYM 535 (622)
Q Consensus 456 vPtleEYl~~~~~SsG~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rGd~~n~V~cyM 535 (622)
+||++|||++|++|+|++++++++++++|..+|+++++|+..+|+|+++++.++||+|||+|+++|+++|+++|+|+|||
T Consensus 384 vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~kE~~rGdv~n~V~~ym 463 (542)
T cd00684 384 VPTFEEYMENALVSIGLGPLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYM 463 (542)
T ss_pred CCCHHHHHhhhhHHhhHHHHHHHHHHhcCCCCCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHHHHhcCCcccHHHHHH
Confidence 99999999999999999999999999999999999999987779999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCcccccHHHHHHHHHHhhhhccccccCCCCCCchh-HHHHhhhhc
Q 006994 536 HETGASESDAREHIRDLITATWMKMNSKDGDE-NPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHK-SKNRVLPLL 613 (622)
Q Consensus 536 kE~g~S~EeA~~~i~~mie~~wK~ln~e~l~~-~~~~~~~p~~~~~~~lN~aR~~~~~Y~~~D~~t~~~~-~k~~I~~ll 613 (622)
+|+|+|+|+|+++++++|+++||+||++++++ ++ +|++|+++++|+||+++++|+++||||.|+. ||++|++||
T Consensus 464 ke~g~s~eeA~~~i~~~ie~~wk~ln~e~l~~~~~----~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~~~~~~i~~ll 539 (542)
T cd00684 464 KEYGVSEEEAREEIKKMIEDAWKELNEEFLKPSSD----VPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLL 539 (542)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHh
Confidence 99999999999999999999999999999987 66 9999999999999999999999999999866 999999999
Q ss_pred ccc
Q 006994 614 VHP 616 (622)
Q Consensus 614 ~ep 616 (622)
++|
T Consensus 540 ~~p 542 (542)
T cd00684 540 FEP 542 (542)
T ss_pred cCC
Confidence 998
No 2
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=1.2e-138 Score=1191.26 Aligned_cols=514 Identities=29% Similarity=0.425 Sum_probs=483.8
Q ss_pred HHHHHHHHHHHHHHhhccccccc-ChhhhHHHHHHHHHhCCccccHHHHHHHHHHHHhhcCCCccccccccccCChHHHH
Q 006994 88 AQRIEKLKGEVRLMLENKEVDYV-DALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVA 166 (622)
Q Consensus 88 ~~~~~~lk~~v~~~l~~~~~~~~-~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~r~~~~~dl~~ta 166 (622)
.++...|...|++.-++.|+.|+ +.++++|+||+||||||+|||++||+++|+++|+.|... ++....|+++||
T Consensus 245 ~~~~~yL~~~~~~~~g~vP~~yp~~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~-----~~~~~~Dl~~tA 319 (784)
T PLN02279 245 AGCLRYLRSLLQKFGNAVPTVYPLDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQG-----EEEIFLDLATCA 319 (784)
T ss_pred hHHHHHHHHHHHhcCCCCCCCCcccHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhccc-----ccCCCCCHHHHH
Confidence 56778898989888778888897 999999999999999999999999999999999988642 223468999999
Q ss_pred HHHHHHHhcCccccccccccccccccccccccccccccc---ccchHHHHHHHHhhhhcCcccHHHHHHHHHHhHHHHHH
Q 006994 167 LEFRLLRQHGFDMHAQDVRVAVGTLSLFMDEKGKLKSCL---GDDIKGILALYEAAYLLVEEESNIFNEAINFTTTHLKE 243 (622)
Q Consensus 167 l~FRLLR~hGy~vS~~d~~~~~~vf~~F~d~~G~F~~~l---~~dv~glL~LyeAs~l~~~gE~~iLdeA~~Ft~~~L~~ 243 (622)
|+|||||||||+||| | ||++|+|+ + |++++ .+||+||||||||||++|||| +|||||+.||++||++
T Consensus 320 l~FRLLR~hGy~VS~-d------vf~~F~~~-~-F~~~l~~~~~dv~gmL~LY~AS~l~~~gE-~iLdeA~~Fs~~~L~~ 389 (784)
T PLN02279 320 LAFRILRLNGYDVSS-D------PLKQFAED-H-FSDSLGGYLKDTGAVLELFRASQISYPDE-SLLEKQNSWTSHFLEQ 389 (784)
T ss_pred HHHHHHHHcCCCCCh-h------HHhhcCCC-c-ccchhcccchhhHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHHHHH
Confidence 999999999999999 9 99999975 5 99988 589999999999999999999 9999999999999999
Q ss_pred HHhcCC---CCCCCcHHHHHHHHccCCcccccchHHHHHHHHHhcCCCC------------CcHHHHHHHHhhhHHHHHH
Q 006994 244 YVKHNN---NDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPD------------VNQVLVELAKLDFNAVQAE 308 (622)
Q Consensus 244 ~~~~~~---~~~~~~l~~~V~~aL~~P~~~~~~Rlear~yI~~Y~~~~~------------~n~~lLelAklDFn~~Q~~ 308 (622)
.++++. ..++++|++||+|||++|||+++||||||+||++|++++. +|++||||||+|||+||++
T Consensus 390 ~~~~~~~~~~~~~~~L~~eV~~AL~~P~~~~l~RlEaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFN~~Qs~ 469 (784)
T PLN02279 390 GLSNWSKTADRLRKYIKKEVEDALNFPYYANLERLANRRSIENYAVDDTRILKTSYRCSNICNQDFLKLAVEDFNFCQSI 469 (784)
T ss_pred HHhcccccccccCccHHHHHHHHhcCchhcCccHHHHHHHHHHhccccchhccccccccccccHHHHHHHHHHHHHHHHH
Confidence 887531 1257889999999999999999999999999999998875 8999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCCCcchhhhhhhHhHHHHhccccCCCccchhhhhhhchhhhhhhhcccccCCCHHHHHHHHHHH
Q 006994 309 HQEELKYVSRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAV 388 (622)
Q Consensus 309 hq~El~~lsrWwk~l~l~~l~faRdRlve~Yfwa~a~~fEP~~s~~Ri~laK~~~li~iiDD~fD~ygt~eEl~~ft~ai 388 (622)
||+||++++|||+++||.+|||||||++|||||++|++|||+||.+|++|||++++++++||+||+|||.||++.||+||
T Consensus 470 hq~EL~~l~rWwke~~L~~L~faRdr~ve~Yf~aaa~~fEPe~S~aRi~~aK~~~L~tviDD~fD~yGt~eEL~~ft~aV 549 (784)
T PLN02279 470 HREELKQLERWIVENRLDKLKFARQKLAYCYFSAAATLFSPELSDARLSWAKNGVLTTVVDDFFDVGGSEEELENLIQLV 549 (784)
T ss_pred HHHHHHHhCeeHHhcCCccCCchhhHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 99999999999999999779999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcc-ccccCChhhHHHHHHHhhhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhcc
Q 006994 389 ERWDVN-AMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAW 467 (622)
Q Consensus 389 ~rWD~~-~~~~LPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~ 467 (622)
+|||.+ .++.+|+|||+||.+|+++++|++.++.+.+|+++++|++++|++++++|++||+|+.+||+||++|||+|+.
T Consensus 550 eRWD~~~~~~~lpeymki~f~aL~~t~nei~~~~~~~qGr~v~~~l~~aW~~ll~ayl~EAeW~~~g~vPT~eEYL~na~ 629 (784)
T PLN02279 550 EKWDVNGSPDFCSEQVEIIFSALRSTISEIGDKAFTWQGRNVTSHIIKIWLDLLKSMLTEAQWSSNKSTPTLDEYMTNAY 629 (784)
T ss_pred HHhccccchhhCcHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhch
Confidence 999998 5688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCcccchhhhhcCCCccchhhhhhcC--CCCHHHH
Q 006994 468 ISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHET--GASESDA 545 (622)
Q Consensus 468 ~SsG~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rGd~~n~V~cyMkE~--g~S~EeA 545 (622)
+|+|+.++++++++++|..+|+++++| .++|+|+++++.|+||+|||+||++|+++||+ |+|+|||+|+ |+|+|||
T Consensus 630 vS~~l~~i~l~~~~~~G~~l~eev~e~-~~~~~L~~l~s~I~RLlNDI~S~e~E~~rG~~-nsV~cYMke~~~gvSeEEA 707 (784)
T PLN02279 630 VSFALGPIVLPALYLVGPKLSEEVVDS-PELHKLYKLMSTCGRLLNDIRGFKRESKEGKL-NAVSLHMIHGNGNSTEEEA 707 (784)
T ss_pred hhhhhHHHHHHHHHHhCCCCCHHHHhC-cchhHHHHHHHHHHHHHHhccccHhHHhCCCc-ceehhhhccCCCCCCHHHH
Confidence 999999888888888999999999999 68999999999999999999999999999998 9999999997 8999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcccccHHHHHHHHHHhhhhccccccCCCCCCchhHHHHhhhhcccccccCC
Q 006994 546 REHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHKSKNRVLPLLVHPVSLIN 621 (622)
Q Consensus 546 ~~~i~~mie~~wK~ln~e~l~~~~~~~~~p~~~~~~~lN~aR~~~~~Y~~~D~~t~~~~~k~~I~~ll~epi~~~~ 621 (622)
+++++++|+++||+||++++++++ +.+|++|+++++|+||+++++|+++||||.+ .||++|++||++|||+.+
T Consensus 708 i~~i~~~Ie~~wKeLn~~~l~~~~--~~vp~~~~~~~ln~aR~~~~~Y~~~Dgyt~~-~~k~~i~~ll~ePi~l~~ 780 (784)
T PLN02279 708 IESMKGLIESQRRELLRLVLQEKG--SNVPRECKDLFWKMSKVLHLFYRKDDGFTSN-DMMSLVKSVIYEPVSLQE 780 (784)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCC--CCCCHHHHHHHHHHHHhhhhheeCCCCCChH-HHHHHHHHHhccCCcCCc
Confidence 999999999999999999996531 1299999999999999999999999999965 799999999999999865
No 3
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=3.8e-115 Score=993.16 Aligned_cols=479 Identities=23% Similarity=0.311 Sum_probs=439.9
Q ss_pred HHHHHHHHHHHHHHhhccccccc-ChhhhHHHHHHHHHhCCccccHHHHHHHHHHHHhhcCCCccccccccccCChHHHH
Q 006994 88 AQRIEKLKGEVRLMLENKEVDYV-DALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVA 166 (622)
Q Consensus 88 ~~~~~~lk~~v~~~l~~~~~~~~-~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~r~~~~~dl~~ta 166 (622)
.++.+.|...|++.-++.|+.|+ +++++||+||+||||||+|||++||+++|+++|+.|.+.|+|||++....|+++||
T Consensus 285 ~~cl~YL~~~~~k~~GgVP~vyP~d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TA 364 (800)
T PLN02592 285 ENCLEYLNKAVQRFNGGVPNVYPVDLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTA 364 (800)
T ss_pred hHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHH
Confidence 46778899999888777888887 99999999999999999999999999999999999877778898877778999999
Q ss_pred HHHHHHHhcCccccccccccccccccccccccccccccc---ccchHHHHHHHHhhhhcCcccHHHHHHHHHHhHHHHHH
Q 006994 167 LEFRLLRQHGFDMHAQDVRVAVGTLSLFMDEKGKLKSCL---GDDIKGILALYEAAYLLVEEESNIFNEAINFTTTHLKE 243 (622)
Q Consensus 167 l~FRLLR~hGy~vS~~d~~~~~~vf~~F~d~~G~F~~~l---~~dv~glL~LyeAs~l~~~gE~~iLdeA~~Ft~~~L~~ 243 (622)
|+|||||||||+||| | ||++|++ +|+|++.+ .+|++|||+|||||||++||| +|||+|+.||++||++
T Consensus 365 LaFRLLRqhGy~VS~-D------vF~~F~~-~g~F~~~~ge~~~Dv~glL~LYeAS~l~~~gE-~iLdeA~~Fs~~~L~~ 435 (800)
T PLN02592 365 MGFRLLRLHGHQVSA-D------VFKHFEK-GGEFFCFAGQSTQAVTGMFNLYRASQVLFPGE-KILENAKEFSSKFLRE 435 (800)
T ss_pred HHHHHHHHcCCCCCh-H------HHHhhcC-CCCccccccccccchHHHHHHHHHHhcCCCcc-hHHHHHHHHHHHHHHH
Confidence 999999999999999 9 9999998 79998665 799999999999999999999 9999999999999999
Q ss_pred HHhcCC----CCCCCcHHHHHHHHccCCcccccchHHHHHHHHHhcCCCCC-------------cHHHHHHHHhhhHHHH
Q 006994 244 YVKHNN----NDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDV-------------NQVLVELAKLDFNAVQ 306 (622)
Q Consensus 244 ~~~~~~----~~~~~~l~~~V~~aL~~P~~~~~~Rlear~yI~~Y~~~~~~-------------n~~lLelAklDFn~~Q 306 (622)
.+..++ |.++++|+++|+|||++|||++|||||||+||++|++++++ |+.||||||+|||+||
T Consensus 436 ~~~~~~l~d~~~~~~~L~~eV~~AL~~P~~~~l~RlEaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFn~~Q 515 (800)
T PLN02592 436 KQEANELLDKWIIMKDLPGEVGFALEIPWYASLPRVETRFYIEQYGGEDDVWIGKTLYRMPYVNNNEYLELAKLDYNNCQ 515 (800)
T ss_pred HhhccccccccccCccHHHHHHHhccChhhcCcchHHHHHHHHHhcCCcccchhhhhccccccCCHHHHHHHHHHHHHHH
Confidence 875221 34578899999999999999999999999999999987764 9999999999999999
Q ss_pred HHhHHHHHHHHHHHhhcCCCCcchhhhhhhHhHHHHhccccCCCccchhhhhhhchhhhhhhhcccccCCCHHHHHHHHH
Q 006994 307 AEHQEELKYVSRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTN 386 (622)
Q Consensus 307 ~~hq~El~~lsrWwk~l~l~~l~faRdRlve~Yfwa~a~~fEP~~s~~Ri~laK~~~li~iiDD~fD~ygt~eEl~~ft~ 386 (622)
++||+||++++||||++||.+|||||||++|||||++|++|||+||.+|++|||++++++++||+||+|||+||++.||+
T Consensus 516 s~hq~EL~~lsrWwke~~L~~L~faRdr~ve~Yfwa~~~~feP~~s~~Ri~~aK~~~LitviDD~fD~yGt~eEl~~ft~ 595 (800)
T PLN02592 516 ALHQLEWDNFQKWYEECNLGEFGVSRSELLLAYFLAAASIFEPERSHERLAWAKTTVLVEAISSYFNKETSSKQRRAFLH 595 (800)
T ss_pred HHhHHHHHHHhHHHHhcCCCcCCcchhHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHH
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHh--------hcCccccccCCh------hhHHHHHHHhhhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhh
Q 006994 387 AVE--------RWDVNAMDQLPY------YMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYS 452 (622)
Q Consensus 387 ai~--------rWD~~~~~~LPe------ymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~ 452 (622)
+|+ |||.+++++||+ |||+||.||++++|+++.++.++||+++++|++++|.++|+ +|..
T Consensus 596 ~v~~~~~~~~~rWd~~~~~~lp~~~~~~~~mki~f~aLy~tineia~~a~~~qGr~v~~~L~~~W~~l~~------~w~~ 669 (800)
T PLN02592 596 EFGYGYKINGRRSDHHFNDRNMRRSGSVKTGEELVGLLLGTLNQLSLDALEAHGRDISHLLRHAWEMWLL------KWLL 669 (800)
T ss_pred HHHhcccccccccCchhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH------HHHh
Confidence 996 899999999988 99999999999999999999999999999999999999998 6777
Q ss_pred cCCCCCHHhhhhhccccchHHHHHHHHHH-HhCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCcccchhhhhcCCCccch
Q 006994 453 SGYIPTLEEYMDNAWISVSGPVILLHAYT-LIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAI 531 (622)
Q Consensus 453 ~g~vPtleEYl~~~~~SsG~~~ll~~~~~-~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rGd~~n~V 531 (622)
+|+ +|+|++.+++++++ .+|..+|+|+++ +|++.++++.+.||+||++|+++|+..
T Consensus 670 ~g~------------~s~~~~~ilv~~~~l~~g~~lsee~l~----~~~~~~l~~li~Rl~nDl~t~~~e~~~------- 726 (800)
T PLN02592 670 EGD------------GRQGEAELLVKTINLTAGRSLSEELLA----HPQYEQLAQLTNRICYQLGHYKKNKVH------- 726 (800)
T ss_pred cCc------------eeccchhhHHHHHHHhcCCCCCHHHcc----chhHHHHHHHHHHHHHhhhHHhhhccc-------
Confidence 776 45677778888888 459999999864 799999999999999999999998841
Q ss_pred hhhhhcCC-CCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccHHHHHHHHHHhhhhccccccCCCCCCchhHHHHhh
Q 006994 532 QCYMHETG-ASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHKSKNRVL 610 (622)
Q Consensus 532 ~cyMkE~g-~S~EeA~~~i~~mie~~wK~ln~e~l~~~~~~~~~p~~~~~~~lN~aR~~~~~Y~~~D~~t~~~~~k~~I~ 610 (622)
.| +++ +|.+++.+.|+..+++|.+.+++... +++|++|++++||++|+ |+|. ||+.|.+|+.||.
T Consensus 727 ------~~~~~~-~a~~~~~~~ie~~~~eL~~lvl~~~~--~~vp~~cK~~f~~~~k~--fy~~---~~~~~~~~~~~i~ 792 (800)
T PLN02592 727 ------INTYNP-EEKSKTTPSIESDMQELVQLVLQNSS--DDIDPVIKQTFLMVAKS--FYYA---AYCDPGTINYHIA 792 (800)
T ss_pred ------CCcccH-HHHHHHHHHHHHHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHHH--HHHh---hcCCHHHHHHHHH
Confidence 23 445 89999999999999999999996321 23999999999999996 5555 9999988999999
Q ss_pred hhcccccc
Q 006994 611 PLLVHPVS 618 (622)
Q Consensus 611 ~ll~epi~ 618 (622)
+|++|||+
T Consensus 793 ~vl~epv~ 800 (800)
T PLN02592 793 KVLFERVA 800 (800)
T ss_pred HHhCCCCC
Confidence 99999985
No 4
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=100.00 E-value=6.3e-55 Score=423.77 Aligned_cols=177 Identities=49% Similarity=0.753 Sum_probs=152.1
Q ss_pred CCcCccccCCchhh------hhHHHHHHHHHHHHHHHHhhcccccccChhhhHHHHHHHHHhCCccccHHHHHHHHHHHH
Q 006994 70 WGYDYLQSLSNEYV------VESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIY 143 (622)
Q Consensus 70 w~~~fl~~~~~~~~------~~~~~~~~~~lk~~v~~~l~~~~~~~~~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~ 143 (622)
|||+||+++++.|. .+.+.+++++||++||+|+.... +|++++|+|||+||||||+|||++||+++|++||
T Consensus 1 W~d~fl~s~s~~~~~~~~~~~~~~~~~~~~Lk~~v~~~l~~~~---~d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~ 77 (183)
T PF01397_consen 1 WGDDFLQSLSPSYTACMQSEDEKCKERAEELKEEVRNMLPASY---PDPLEKLELIDTLQRLGISYHFEDEIKEILDSIY 77 (183)
T ss_dssp TTHHHHHHTBHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHSSS---SHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHH
T ss_pred CCCceecCCCCcchhccchhHHHHHHHHHHHHHHHHHHHhhcC---CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHh
Confidence 99999977655554 37899999999999999998863 4899999999999999999999999999999999
Q ss_pred hhcCCCccccccccccCChHHHHHHHHHHHhcCcccccccccccccccccccccccccccccccchHHHHHHHHhhhhcC
Q 006994 144 NERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGILALYEAAYLLV 223 (622)
Q Consensus 144 ~~~~~~~~~~~r~~~~~dl~~tal~FRLLR~hGy~vS~~d~~~~~~vf~~F~d~~G~F~~~l~~dv~glL~LyeAs~l~~ 223 (622)
+.|...+.+ ..||++|||+|||||||||+||| | ||++|+|++|+|+.++.+||+|||+|||||||++
T Consensus 78 ~~~~~~~~~------~~dL~~~AL~FRLLRqhGy~VS~-D------vF~~F~d~~g~F~~~l~~Dv~glLsLYeAS~l~~ 144 (183)
T PF01397_consen 78 RSWDEDNEE------IDDLYTTALRFRLLRQHGYYVSS-D------VFNKFKDEKGNFKESLSNDVKGLLSLYEASHLRF 144 (183)
T ss_dssp HTTTTTSHT------SSCHHHHHHHHHHHHHTT----G-G------GGGGGBETTSSBSGGGGGHHHHHHHHHHHHTT--
T ss_pred hhccccccc------cCchhHHHHHHHHHHHcCCcccH-H------HHhCcccCCCccchhhhHhHHHHHHHHHHHHccC
Confidence 988765421 34999999999999999999999 9 9999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhHHHHHHHHhcCCCCCCCcHHHHHHHHc
Q 006994 224 EEESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHAL 264 (622)
Q Consensus 224 ~gE~~iLdeA~~Ft~~~L~~~~~~~~~~~~~~l~~~V~~aL 264 (622)
+|| +|||||+.||++||++.+.++. ..+++|+++|+|||
T Consensus 145 ~gE-~iLdeA~~Ft~~~L~~~~~~~~-~~~~~L~~~V~~AL 183 (183)
T PF01397_consen 145 HGE-DILDEARAFTTKHLKSLLSNLS-IPDPHLAKEVKHAL 183 (183)
T ss_dssp TT--HHHHHHHHHHHHHHHHHHTTTC-TTSCHHHHHHHHHH
T ss_pred CCh-HHHHHHHHHHHHHHHHHhccCC-CCcHHHHHHHHHhC
Confidence 999 9999999999999999998621 11235999999997
No 5
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=100.00 E-value=2.3e-47 Score=391.11 Aligned_cols=268 Identities=31% Similarity=0.430 Sum_probs=249.1
Q ss_pred HHHHHHhhhHHHHHHhHHHHHHHHHHHhhcCC-CCcchhhhhhhHhHHHHhccccCCCccchhhhhhhchhhhhhhhccc
Q 006994 294 LVELAKLDFNAVQAEHQEELKYVSRWWRKTGL-GELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVY 372 (622)
Q Consensus 294 lLelAklDFn~~Q~~hq~El~~lsrWwk~l~l-~~l~faRdRlve~Yfwa~a~~fEP~~s~~Ri~laK~~~li~iiDD~f 372 (622)
||+|||+|||+||+.||+|++++++||+++|+ .+.+.+|+|++.++|+.++.++.|+.+..|+++||+++|+|++||+|
T Consensus 1 ~~~la~~~~~~~~~~~~~e~~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~aa~~~P~~~~~l~~~a~~~~w~f~~DD~~ 80 (270)
T PF03936_consen 1 YLELAKRDFPHCQALHQQELEEIDRWVKEFGLFDEDKAARQRFRQAYFGLLAARFYPDSSDELLAAADWMAWLFIFDDFF 80 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHTTSHHHHHHHHHHHHHHHHSGCGHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhhcHhhHHHHHHHHHHHHHHHHHcCCccccccchhhhhHhHHhhhhheeCCCcHHHHHHHHhhchheeeeeecc
Confidence 69999999999999999999999999999999 55887899999999999999999997777779999999999999999
Q ss_pred ccCCCHHHHHHHHHHHhhcCccccccCChhhHHHHHHHhhhHHHHHHHHHhhcCc-cchHHHHHHHHHHHHHHHHHHHHh
Q 006994 373 DVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGV-HIIPYLKKAWADMCKSFLLEAKWY 451 (622)
Q Consensus 373 D~ygt~eEl~~ft~ai~rWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~k~~g~-~~~~~lk~~w~~~~~a~l~EAkW~ 451 (622)
|.+|+.++++.|+++++||++...+.+|+++++++.++.++++++...+.+.++. ++.++|+++|.+|++++++|++|+
T Consensus 81 D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 160 (270)
T PF03936_consen 81 DDGGSAEELEALTDAVERWDPNSGDPLPDPDKPLFRALADIWNRIAARMSPAQRRRDQIKRFRNSWREYLNAYLWEARWR 160 (270)
T ss_dssp HTTSHHHHHHHHHHHHHHTSSGGGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhhhhhcccHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999987788899999999999999999998888777553 477889999999999999999999
Q ss_pred hcCCCCCHHhhhhhccccchHHHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCcccchhhhhcCCCccch
Q 006994 452 SSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAI 531 (622)
Q Consensus 452 ~~g~vPtleEYl~~~~~SsG~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rGd~~n~V 531 (622)
..|++||++||+++|+.|+|+++++.+..+++|..++++..+++..+|.+.++++.+++|+|||.|++||+.+|+.+|.|
T Consensus 161 ~~~~~ps~eeYl~~R~~t~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~KE~~~g~~~N~v 240 (270)
T PF03936_consen 161 ERGRIPSLEEYLEMRRHTSGVYPCLALIEFALEFALGELPPEVLEHPPMLRRLAADIIRLVNDLYSYKKEIARGDVHNLV 240 (270)
T ss_dssp HTTS--SHHHHHHHHHHHTSHHHHHHHHHHHCSSCHTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSHH
T ss_pred ccCCCCCHHHHHHhccccccccHHHHHHHHhCCCccccccHHHHHhchHHHHHHHHHHHHhcccchhhcchhhcccccHH
Confidence 99999999999999999999999999998888877777766777777889999999999999999999999999999999
Q ss_pred hhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 006994 532 QCYMHETGASESDAREHIRDLITATWMKMN 561 (622)
Q Consensus 532 ~cyMkE~g~S~EeA~~~i~~mie~~wK~ln 561 (622)
.|+|+++|+|.|+|++++.+|+++++++||
T Consensus 241 ~~l~~~~~~s~e~A~~~v~~~~~~~~~efn 270 (270)
T PF03936_consen 241 VVLMNEHGLSLEEAVDEVAEMINECIREFN 270 (270)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhcCCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999998
No 6
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=100.00 E-value=6.8e-45 Score=375.48 Aligned_cols=282 Identities=44% Similarity=0.796 Sum_probs=265.9
Q ss_pred HhHHHHHHHHHHHhhcCCCC-cchhhhhhhHhHHHHhccccCCCccchhhhhhhchhhhhhhhcccccCCCHHHHHHHHH
Q 006994 308 EHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTN 386 (622)
Q Consensus 308 ~hq~El~~lsrWwk~l~l~~-l~faRdRlve~Yfwa~a~~fEP~~s~~Ri~laK~~~li~iiDD~fD~ygt~eEl~~ft~ 386 (622)
.||+|++++++||+++||.. .+++|.+...+|+|+++++|+|+.+..|+++||+++|+|++||+||.+|+.+++..+++
T Consensus 1 ~~~~e~~~~~~W~~~~~l~~~~~~~r~~~~~~~~~~a~~~p~~~~~~~l~~~a~~~~~~f~~DD~~D~~~~~~~~~~~~~ 80 (284)
T cd00868 1 LHQEELKELSRWWKELGLQEKLPFARDRLVECYFWAAGSYFEPQYSEARIALAKTIALLTVIDDTYDDYGTLEELELFTE 80 (284)
T ss_pred CCHHHHHHHHHHHHHhCCcccCCchhhHhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHH
Confidence 48999999999999999999 55999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCccccccCChhhHHHHHHHhhhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhc
Q 006994 387 AVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNA 466 (622)
Q Consensus 387 ai~rWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~ 466 (622)
+++||+....+.+|+++++++.+++++++++...+.+.+|+....++++.|.+++.++++|++|+..|++||++||+.+|
T Consensus 81 ~~~~~~~~~~~~~p~~~~~~~~~l~d~~~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~e~~~~~~~~~p~~~eYl~~R 160 (284)
T cd00868 81 AVERWDISAIDELPEYMKPVFKALYDLVNEIEEELAKEGGSESLPYLKEAWKDLLRAYLVEAKWANEGYVPSFEEYLENR 160 (284)
T ss_pred HHHhcChhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhc
Confidence 99999988888999999999999999999999998888888899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCcccchhhhhcCCCccchhhhhhcCCCCHHHHH
Q 006994 467 WISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDAR 546 (622)
Q Consensus 467 ~~SsG~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rGd~~n~V~cyMkE~g~S~EeA~ 546 (622)
+.|+|+++++....+++|..+|++.+.+.+...++++.++.+++|+||+.||+||+.+|+.+|+|.|||+++|+|.++|+
T Consensus 161 ~~~~g~~~~~~l~~~~~g~~l~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~N~v~vl~~~~~~~~~eA~ 240 (284)
T cd00868 161 RVSIGYPPLLALSFLGMGDILPEEAFEWLPSYPKLVRASSTIGRLLNDIASYEKEIARGEVANSVECYMKEYGVSEEEAL 240 (284)
T ss_pred eehhhHHHHHHHHHHHcCCCCCHHHHHHhhhhHHHHHHHHHHHHHhccchHHHHHHccCCcccHHHHHHhccCCCHHHHH
Confidence 99999999999999999999998555555888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC-CCcccccHHHHHHHHHHhhhhcccc
Q 006994 547 EHIRDLITATWMKMNSKDGDEN-PDHLLLSNNFIRFAINLARMAQCTY 593 (622)
Q Consensus 547 ~~i~~mie~~wK~ln~e~l~~~-~~~~~~p~~~~~~~lN~aR~~~~~Y 593 (622)
+++.++++++|+++++...... + .++.+++.+.|++|.....|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~g~~~w~ 284 (284)
T cd00868 241 EELRKMIEEAWKELNEEVLKLSSD----VPRAVLETLLNLARGIYVWY 284 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC----CCHHHHHHHHHHHHhhhhcC
Confidence 9999999999999999998642 4 68999999999999876544
No 7
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=100.00 E-value=3.6e-32 Score=284.72 Aligned_cols=245 Identities=15% Similarity=0.104 Sum_probs=213.7
Q ss_pred HHHHHHhhcCCCCcchhhhhhhHhHHHHhccccCCCccchhh-hhhhchhhhhhhhcccccC-CCHHHHHHHHHHHhhcC
Q 006994 315 YVSRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRR-MSTKANALITTIDDVYDVY-GTLDELELFTNAVERWD 392 (622)
Q Consensus 315 ~lsrWwk~l~l~~l~faRdRlve~Yfwa~a~~fEP~~s~~Ri-~laK~~~li~iiDD~fD~y-gt~eEl~~ft~ai~rWD 392 (622)
+...|.++.|+..-+.+|+++..++|+.++.++.|+++.+|+ ..++++.|+|++||+||.. +++++.+.+++.+.++.
T Consensus 18 ~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~a~~~P~a~~~~l~l~~~~~~w~f~~DD~~D~~~~~~~~~~~~~~~~~~~~ 97 (303)
T cd00687 18 EYLEWVLEEMLIPSEKAEKRFLSADFGDLAALFYPDADDERLMLAADLMAWLFVFDDLLDRDQKSPEDGEAGVTRLLDIL 97 (303)
T ss_pred HHHHHHHHcCCCCcchhHHHHhcCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcccCCccccCHHHHHHHHHHHHhcc
Confidence 356899999776645689999998888888888899999999 6679999999999999987 59999999999888854
Q ss_pred ccccccCChhhHHHHHHHhhhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchH
Q 006994 393 VNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSG 472 (622)
Q Consensus 393 ~~~~~~LPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~ 472 (622)
......-|+...++..++.+++.++.... +.....++++.|.+|+.++++|++|+.+|++||++||+++|+.|+|+
T Consensus 98 ~~~~~~~~~~~~p~~~~~~d~~~r~~~~~----~~~~~~r~~~~~~~~~~a~~~e~~~~~~~~~psl~eYl~~R~~~~g~ 173 (303)
T cd00687 98 RGDGLDSPDDATPLEFGLADLWRRTLARM----SAEWFNRFAHYTEDYFDAYIWEGKNRLNGHVPDVAEYLEMRRFNIGA 173 (303)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhccCC----CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHhhhcccc
Confidence 43211114677888889999888876443 23456899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCcccchhhh-hcCCCccchhhhhhcCCCCHHHHHHHHHH
Q 006994 473 PVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEV-KRGDVPKAIQCYMHETGASESDAREHIRD 551 (622)
Q Consensus 473 ~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~-~rGd~~n~V~cyMkE~g~S~EeA~~~i~~ 551 (622)
++++..+.+++|..+|+++.+. +...+++++++.+++|+|||+||+||+ +.|+.+|+|.|+|+++|+|.|+|++++.+
T Consensus 174 ~~~~~l~~~~~g~~lp~~~~~~-~~~~~l~~~~~~~~~l~NDl~S~~KE~~~~g~~~N~V~vl~~~~g~s~~eA~~~~~~ 252 (303)
T cd00687 174 DPCLGLSEFIGGPEVPAAVRLD-PVMRALEALASDAIALVNDIYSYEKEIKANGEVHNLVKVLAEEHGLSLEEAISVVRD 252 (303)
T ss_pred cccHHHHHHhcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHHhhHHHHHhCCccchHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999999999999998766 556779999999999999999999999 88999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 006994 552 LITATWMKMNSKD 564 (622)
Q Consensus 552 mie~~wK~ln~e~ 564 (622)
+++++++++.+..
T Consensus 253 ~~~~~~~~f~~~~ 265 (303)
T cd00687 253 MHNERITQFEELE 265 (303)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
No 8
>PLN02150 terpene synthase/cyclase family protein
Probab=99.96 E-value=5e-30 Score=224.65 Aligned_cols=94 Identities=26% Similarity=0.533 Sum_probs=90.5
Q ss_pred hhcCCCccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccHHHHHHHHHHhhhhccc-cccCCCCC
Q 006994 522 VKRGDVPKAIQCYMHETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCT-YQNGDGHT 600 (622)
Q Consensus 522 ~~rGd~~n~V~cyMkE~g~S~EeA~~~i~~mie~~wK~ln~e~l~~~~~~~~~p~~~~~~~lN~aR~~~~~-Y~~~D~~t 600 (622)
++|||++|+|+|||||||+|+|||+++++++|+++||+||+|++++++ +|.+++++++|+||+++|+ |+++||||
T Consensus 1 ~~rg~vaSsIeCYMke~g~seeeA~~~i~~li~~~WK~iN~e~l~~~~----~p~~~~~~~~NlaR~~~~~~Y~~~Dg~t 76 (96)
T PLN02150 1 MRRGEVANGVNCYMKQHGVTKEEAVSELKKMIRDNYKIVMEEFLTIKD----VPRPVLVRCLNLARLIDVYCYNEGDGFT 76 (96)
T ss_pred CCCCcchHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CCHHHHHHHHHHHHHHHhheecCCCCCC
Confidence 578999999999999999999999999999999999999999999887 9999999999999999999 99999999
Q ss_pred Cchh-HHHHhhhhccccccc
Q 006994 601 IQHK-SKNRVLPLLVHPVSL 619 (622)
Q Consensus 601 ~~~~-~k~~I~~ll~epi~~ 619 (622)
.++. +|++|++||++|||+
T Consensus 77 ~~~~~~K~~I~sLlv~pi~i 96 (96)
T PLN02150 77 YPHGKLKDLITSLFFHPLPL 96 (96)
T ss_pred CCcHHHHHHHHHHhccCCCC
Confidence 8765 999999999999986
No 9
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.82 E-value=3.9e-20 Score=182.53 Aligned_cols=229 Identities=26% Similarity=0.292 Sum_probs=182.6
Q ss_pred HHhccccCCCccchhhhhhhchhhhhhhhcccccCCCHHHHHHHHHHHhhcCccccccCChhhHHHHHHHhhhHHHHHHH
Q 006994 341 WALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFD 420 (622)
Q Consensus 341 wa~a~~fEP~~s~~Ri~laK~~~li~iiDD~fD~ygt~eEl~~ft~ai~rWD~~~~~~LPeymk~~f~aL~~~~~ei~~~ 420 (622)
++++.+|+|+++..|.+++++.+|++++||++|..++..+.......+ .....|..+...+..+.+.++++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (243)
T cd00385 2 RPLAVLLEPEASRLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAV------AIDGLPEAILAGDLLLADAFEELARE 75 (243)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCchhhhhhH------HhcCchHHHHHHHHHHHHHHHHHHhC
Confidence 456678889989999999999999999999999887666655544333 12345677777788888888877643
Q ss_pred HHhhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHHHHHHHhCCCCChHHHHhhhhhhh
Q 006994 421 VLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPN 500 (622)
Q Consensus 421 ~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~~~~~~~G~~l~~e~~e~~~~~p~ 500 (622)
.. +....++.+.|.+++.|+..|+.|... .+||++||+.++..++|.. +......+++...++ ..+.+....
T Consensus 76 ~~----~~~~~~~~~~~~~~~~g~~~d~~~~~~-~~~t~~ey~~~~~~~t~~~-~~~~~~~~~~~~~~~--~~~~~~~~~ 147 (243)
T cd00385 76 GS----PEALEILAEALLDLLEGQLLDLKWRRE-YVPTLEEYLEYCRYKTAGL-VGALCLLGAGLSGGE--AELLEALRK 147 (243)
T ss_pred CC----HHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHhHHHH-HHHHHHHHHHHhCCC--HHHHHHHHH
Confidence 22 345789999999999999999999866 8899999999999998544 444455555555555 344456678
Q ss_pred HHHHHHHHHHHhcCcccchhhhhcC-CCccchhhhhhcCCC------------CHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 006994 501 IIRWPSMIFRLANDLATSSDEVKRG-DVPKAIQCYMHETGA------------SESDAREHIRDLITATWMKMNSKDGDE 567 (622)
Q Consensus 501 l~~~~~~i~RL~NDI~S~kkE~~rG-d~~n~V~cyMkE~g~------------S~EeA~~~i~~mie~~wK~ln~e~l~~ 567 (622)
+....+.+.+|.||+.++.+|.+.| +..|.+.++|+++|+ +.++|.+++..+++++|+++++.....
T Consensus 148 ~~~~~g~~~ql~nDl~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 227 (243)
T cd00385 148 LGRALGLAFQLTNDLLDYEGDAERGEGKCTLPVLYALEYGVPAEDLLLVEKSGSLEEALEELAKLAEEALKELNELILSL 227 (243)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHhCCchHHHHHHHHHhCChhhHHHHHHHCChHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999999986 678999999999998 889999999999999999999987543
Q ss_pred CCCcccccHHHHHHHHHHhh
Q 006994 568 NPDHLLLSNNFIRFAINLAR 587 (622)
Q Consensus 568 ~~~~~~~p~~~~~~~lN~aR 587 (622)
.+ .++.+++.+.+++|
T Consensus 228 ~~----~~~~~~~~~~~~~~ 243 (243)
T cd00385 228 PD----VPRALLALALNLYR 243 (243)
T ss_pred HH----HHHHHHHHHHHHhC
Confidence 23 46777887777654
No 10
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4.2.3.6). TRI5 encodes the enzyme trichodiene synthase, which has been shown to catalyse the first step in the trichothecene pathways of Fusarium and Trichothecium species [, ].; GO: 0045482 trichodiene synthase activity, 0016106 sesquiterpenoid biosynthetic process; PDB: 1YYT_A 2PS5_A 2AEL_A 1YYS_A 1YJ4_A 2Q9Y_A 2PS4_A 2AEK_B 1KIY_B 2PS7_A ....
Probab=97.50 E-value=0.0008 Score=72.28 Aligned_cols=194 Identities=13% Similarity=0.053 Sum_probs=111.4
Q ss_pred CCcc-chhhhhhhchhhhhhhhcccccCCCHHHHHHHHHHHhhcCccccccCChhhHHHHHHHhhhHHHHHHHHHhhcCc
Q 006994 349 PQFG-YCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGV 427 (622)
Q Consensus 349 P~~s-~~Ri~laK~~~li~iiDD~fD~ygt~eEl~~ft~ai~rWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~k~~g~ 427 (622)
|..+ ..++.++-..++++++||.++.. .+++..|-+-+-. ... .|. ++...+ +++-.++.+.-|+
T Consensus 79 ~~~~~evqv~IaiyT~yvi~iDD~~~~~--~~~l~~F~~~l~~--Gq~---Q~~---p~L~~~----~~~L~~~~~~fgp 144 (376)
T PF06330_consen 79 PHLPKEVQVAIAIYTTYVIIIDDSSQEP--SDDLRTFHQRLIL--GQP---QKH---PLLDGF----ASLLREMWRHFGP 144 (376)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHTT--S-S--HHHHTTHHHHHHH--T------SS---HHHHHH----HHHHHHHHTTS-H
T ss_pred CCCCHHHHHHHHHHHHHHHhcccccccc--cHHHHHHHHHHhc--CCC---CCC---HHHHHH----HHHHHHHHHHcch
Confidence 4443 45668888899999999998765 4666666655443 111 111 233333 3333344555577
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHHHHHHHhCCCCChHHHHhhhhhhhHH---HH
Q 006994 428 HIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNII---RW 504 (622)
Q Consensus 428 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~---~~ 504 (622)
.+..-+.++--+++.+..-|.+.. +-.|.-..|-..-+.=+|...+.+...+ .....++ ...+..++ --
T Consensus 145 f~anmI~~STLdFi~g~~LE~~~f--~~~p~A~~FP~fLR~ktGlsEaYA~FiF--Pk~~fpe----~~~~~~y~~AIpd 216 (376)
T PF06330_consen 145 FCANMIVKSTLDFINGCWLEQKNF--HGSPGAPDFPDFLRRKTGLSEAYAFFIF--PKALFPE----VEYFIQYTPAIPD 216 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT------TT-TTHHHHHHHHHH-HHHHHHHT----TTTS-T----TTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcccC--CCCCCCccccHHHHhccCcchhheeeec--ccccCCh----HHHHHHHHHHHHH
Confidence 777888889999999999887643 2235333344444445555554433332 2222222 12233333 33
Q ss_pred HHHHHHHhcCcccchhhhh-cCCCccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 006994 505 PSMIFRLANDLATSSDEVK-RGDVPKAIQCYMHETGASESDAREHIRDLITATWMKMNSKD 564 (622)
Q Consensus 505 ~~~i~RL~NDI~S~kkE~~-rGd~~n~V~cyMkE~g~S~EeA~~~i~~mie~~wK~ln~e~ 564 (622)
....+-++|||.||=||.- .|+..|.|.-+-.-+|+|.-+|.+.+.+-.-++-+++.+-.
T Consensus 217 l~~fi~~~NDILSFYKE~l~a~E~~NyI~n~A~~~g~S~~eaL~~l~~eti~a~~rv~~vL 277 (376)
T PF06330_consen 217 LMRFINYVNDILSFYKEELVAGETGNYIHNRARVHGVSILEALRELTDETIEAVERVRRVL 277 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSSSSHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHhhcccccccchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444559999999999977 78899999877777899999999987665555656655543
No 11
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1. This CD includes the terpenoid cyclase, trichodiene synthase, which catalyzes the cyclization of farnesyl diphosphate (FPP) to trichodiene using a cis-trans pathway, and is the first committed step in the biosynthesis of trichothecene toxins and antibiotics. As with other enzymes with the 'terpenoid synthase fold', this enzyme has two conserved metal binding motifs that coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function as homodimers and are found in several genera of fungi.
Probab=97.30 E-value=0.0022 Score=67.94 Aligned_cols=188 Identities=14% Similarity=0.057 Sum_probs=114.0
Q ss_pred hhhhchhhhhhhhcccccCCCHHHHHHHHHHHhhcCccccccCChhhHHHHHHHhhhHHHHHHHHHhhcCccchHHHHHH
Q 006994 357 MSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKA 436 (622)
Q Consensus 357 ~laK~~~li~iiDD~fD~ygt~eEl~~ft~ai~rWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~ 436 (622)
.++-..+.++++||.=|.. .+.+..|.+-+.. .. ....| +...+.+.+. .+..--|+.+..-+.++
T Consensus 88 ~isi~~tY~~~lDD~~~e~--~~~m~~f~~dL~~--G~-~qkhP-----~l~~v~~~l~----~~lr~fGpF~s~~IikS 153 (357)
T cd00686 88 DLSIHYTYTLVLDDSKDDP--YPTMVNYFDDLQA--GR-EQAHP-----WWALVNEHFP----NVLRHFGPFCSLNLIRS 153 (357)
T ss_pred HHHHHHheeeEeccccccc--chHHHHHHHHHhc--CC-CCCCc-----HHHHHHHHHH----HHHHHhhhhhHHHHHHH
Confidence 5566667888999997754 2456666655543 11 11223 1222222222 22233466666677788
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHH---HHHHHhc
Q 006994 437 WADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPS---MIFRLAN 513 (622)
Q Consensus 437 w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~---~i~RL~N 513 (622)
--+++.+.+-|... .+.-|.-.+|-...+.=+|..-+.+...+ |++.|.-...+..+..+.. ...-++|
T Consensus 154 TLdFv~g~~iEq~n--f~~~p~A~~fP~ylR~ksGl~E~yA~FiF------Pk~~FpE~~~~~qi~~AIp~~~~~i~~~N 225 (357)
T cd00686 154 TLDFFEGCWIEQYN--FGGFPGSHDYPQFLRRMNGLGHCVGASLW------PKEQFNERSLFLEITSAIAQMENWMVWVN 225 (357)
T ss_pred HHHHHHHHHHhhhc--cCCCCCCcccchHHHhccCCcceeEEEec------chhhCchHhhHHHhhHHHHHHHHHHHhhh
Confidence 88899999888663 34467666666666666666555443322 4443322222333333444 3445899
Q ss_pred Ccccchhhhhc-CCCccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 006994 514 DLATSSDEVKR-GDVPKAIQCYMHETGASESDAREHIRDLITATWMKMNSKDGDE 567 (622)
Q Consensus 514 DI~S~kkE~~r-Gd~~n~V~cyMkE~g~S~EeA~~~i~~mie~~wK~ln~e~l~~ 567 (622)
||.||=||--. ++-.|.|.-|-+.+|+|..+|.+.+..-.-.+-+++.+- |.+
T Consensus 226 DILSFYKEe~~~~E~~n~V~Nya~~~GiS~~eAL~~lt~dTv~~s~rv~~V-Lse 279 (357)
T cd00686 226 DLMSFYKEFDDERDQISLVKNYVVSDEISLHEALEKLTQDTLHSSKQMVAV-FSD 279 (357)
T ss_pred hhhheehhhcccccccchHHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHH-hcC
Confidence 99999999854 456788888888899999999997766666666666554 443
No 12
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=88.64 E-value=6.9 Score=39.25 Aligned_cols=119 Identities=14% Similarity=0.207 Sum_probs=77.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhccc-cchHHHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHH
Q 006994 429 IIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWI-SVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSM 507 (622)
Q Consensus 429 ~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~-SsG~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~ 507 (622)
....+.+...+++.|...+..|... ..||.++|++.... |.+.....+....+.+.. +++.. ....++.+..+.
T Consensus 86 ~~~~~~~~~~~~~~Gq~~Dl~~~~~-~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~lG~ 160 (236)
T cd00867 86 ALELFAEALRELLEGQALDLEFERD-TYETLDEYLEYCRYKTAGLVGLLCLLGAGLSGA-DDEQA---EALKDYGRALGL 160 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCc-CHHHH---HHHHHHHHHHHH
Confidence 4556778889999999999988643 57899999999988 666544433333333332 33332 233567788888
Q ss_pred HHHHhcCcccchhhh----------hcCCCccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 006994 508 IFRLANDLATSSDEV----------KRGDVPKAIQCYMHETGASESDAREHIRDLITATWMKMNSK 563 (622)
Q Consensus 508 i~RL~NDI~S~kkE~----------~rGd~~n~V~cyMkE~g~S~EeA~~~i~~mie~~wK~ln~e 563 (622)
..-+.||+..+.... .+|.. +...+++ .+.+.+..+.+++.+...
T Consensus 161 a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~-tlp~~~~----------~~~~~~~~~~~~~~~~~~ 215 (236)
T cd00867 161 AFQLTDDLLDVFGDAEELGKVGSDLREGRI-TLPVILA----------RERAAEYAEEAYAALEAL 215 (236)
T ss_pred HHHHHHHhccccCChHHHCccHHHHHcCCc-hHHHHHH----------HHHHHHHHHHHHHHHHhC
Confidence 889999998876654 34432 4444444 566666677776665543
No 13
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=83.43 E-value=30 Score=35.85 Aligned_cols=119 Identities=21% Similarity=0.188 Sum_probs=63.9
Q ss_pred HhHHHHhccccCCCccchhhhhhhchhhhhhhhcccccC-CCHHH----HHHHHHHHhhcCccccccCChhhHHHHHHHh
Q 006994 337 ENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVY-GTLDE----LELFTNAVERWDVNAMDQLPYYMKLCFLVLH 411 (622)
Q Consensus 337 e~Yfwa~a~~fEP~~s~~Ri~laK~~~li~iiDD~fD~y-gt~eE----l~~ft~ai~rWD~~~~~~LPeymk~~f~aL~ 411 (622)
++|+|+.-..+ ...|-.+.-+-.|.=++||+-|.. ++.++ |+.+-+++..- ...-|. .++..+|.
T Consensus 6 ~sf~~a~~~lp----~~~R~~~~alYAf~R~~Ddi~D~~~~~~~~~~~~L~~wr~~l~~~----~~g~~~--~pv~~aL~ 75 (266)
T TIGR03464 6 ENFPVASLLLP----ARLRAPIHAVYAFARTADDIADEGDGSAEERLALLDDFRAELDAI----YSGEPA--APVFVALA 75 (266)
T ss_pred CcHHHHHHhCC----HHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHH----hCCCCC--ChHHHHHH
Confidence 34565555443 234444445666777899999975 45443 33333333320 111121 24556666
Q ss_pred hhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHHHHHH
Q 006994 412 NSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYT 481 (622)
Q Consensus 412 ~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~~~~~ 481 (622)
.++.+. +.. ++.+.+++.++... ......+|++|.......+.|+...++...+
T Consensus 76 ~~~~~~--------~l~-----~~~~~~li~~~~~D---l~~~~~~t~~eL~~Y~~~vAg~vg~l~~~i~ 129 (266)
T TIGR03464 76 RTVQRH--------GLP-----IEPFLDLLDAFRQD---VVVTRYATWAELLDYCRYSANPVGRLVLDLY 129 (266)
T ss_pred HHHHHc--------CCC-----hHHHHHHHHHHHHh---ccCCCCCCHHHHHHHHHHhHHHHHHHHHHHc
Confidence 555432 211 23455666666422 2234567999888888888887665555544
No 14
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=80.47 E-value=17 Score=37.43 Aligned_cols=193 Identities=16% Similarity=0.176 Sum_probs=98.2
Q ss_pred hHHHHhccccCCCccchhhhhhhchhhhhhhhcccccCCCHH----HHHHHHHHHhhcCccccccCChhhHHHHHHHhhh
Q 006994 338 NFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLD----ELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNS 413 (622)
Q Consensus 338 ~Yfwa~a~~fEP~~s~~Ri~laK~~~li~iiDD~fD~ygt~e----El~~ft~ai~rWD~~~~~~LPeymk~~f~aL~~~ 413 (622)
.|++++-.. | ...|-.+.-+-.+.-.+||+-|...... -++-+-+++...-.+..+..|....++..++..+
T Consensus 7 sf~~a~~~l--P--~~~R~~~~alyaf~r~~d~i~D~~~~~~~~~~~L~~w~~~l~~~~~~~~~~~~~~~~pv~~~l~~~ 82 (267)
T PF00494_consen 7 SFYLASLLL--P--KEKRPAVFALYAFCRELDDIVDEPSDPEEARARLQWWRDALNSIFASYEDSLPEPSHPVARALADL 82 (267)
T ss_dssp HHHHHHTTS-----HHHHHHHHHHHHHHHHHHHHHHCTSS-HSCHHHHHHHHHHHHHHHH-TSTHHHSSHHHHHHHHHHH
T ss_pred cHHHHHHHC--C--HHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhhhccCCCcCHHHHHHHHH
Confidence 455444433 4 3455555667788888999999765333 2444555555422111112333344566666554
Q ss_pred HHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHHHHHHHhCCCCCh-HHH
Q 006994 414 TNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTK-EAL 492 (622)
Q Consensus 414 ~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~~~~~~~G~~l~~-e~~ 492 (622)
.+.. +--++.+.+++.|+... .....++|++|+......+.|....++...++... ++ +..
T Consensus 83 ~~~~-------------~l~~~~l~~li~~~~~d---l~~~~~~t~~~L~~Y~~~vag~vg~l~~~~~~~~~--~~~~~~ 144 (267)
T PF00494_consen 83 VRRY-------------GLPREPLLELIDGMEMD---LEFTPYETFADLERYCYYVAGSVGLLLLQLLGAHD--PDEAAR 144 (267)
T ss_dssp HCCS-------------HHHHHHHHHHHHHHHHC---TT-S--SSHHHHHHHHHHHTHHHHHHHHHHHHSST--SHHHHH
T ss_pred HHHH-------------hhhHHHHHHHHHHhccc---ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc--chhhHH
Confidence 4321 13345567777777533 33345789999999988888877666655554421 22 222
Q ss_pred HhhhhhhhHHHHHHHHHHHhcCcccchhh-hhcCC--CccchhhhhhcCCCCHHHHHHH----------HHHHHHHHHHH
Q 006994 493 QFLEEYPNIIRWPSMIFRLANDLATSSDE-VKRGD--VPKAIQCYMHETGASESDAREH----------IRDLITATWMK 559 (622)
Q Consensus 493 e~~~~~p~l~~~~~~i~RL~NDI~S~kkE-~~rGd--~~n~V~cyMkE~g~S~EeA~~~----------i~~mie~~wK~ 559 (622)
+. ....+..+-+.|=|...... ..+|- .+.- .|.++|+|.++-.+. +..+++.+...
T Consensus 145 ~~-------a~~lG~alql~nilRd~~~D~~~~gR~ylP~d---~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~~A~~~ 214 (267)
T PF00494_consen 145 DA-------ARALGRALQLTNILRDIPEDALRRGRIYLPLD---DLRRFGVTPEDLLAGRPRSERLRALIRELAARARAH 214 (267)
T ss_dssp HH-------HHHHHHHHHHHHHHHTHHHH-HHTT---S-HH---HHHHTTSSHHHHHHHG-GGHHHHHHHHHHHHHHHHH
T ss_pred HH-------HHHHHHHHHHHHHHHHhHHHHHhcccccCCch---hHHHcCCCHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 22 22333333333333333344 34453 3332 257789887765332 44555555544
Q ss_pred HHH
Q 006994 560 MNS 562 (622)
Q Consensus 560 ln~ 562 (622)
+.+
T Consensus 215 l~~ 217 (267)
T PF00494_consen 215 LDE 217 (267)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 15
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=79.58 E-value=36 Score=35.07 Aligned_cols=119 Identities=16% Similarity=0.185 Sum_probs=63.9
Q ss_pred hHHHHhccccCCCccchhhhhhhchhhhhhhhcccccCCCH-----HHHHHHHHHHhhcCccccccCChhhHHHHHHHhh
Q 006994 338 NFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTL-----DELELFTNAVERWDVNAMDQLPYYMKLCFLVLHN 412 (622)
Q Consensus 338 ~Yfwa~a~~fEP~~s~~Ri~laK~~~li~iiDD~fD~ygt~-----eEl~~ft~ai~rWD~~~~~~LPeymk~~f~aL~~ 412 (622)
+|+++.-.. | ...|-.+.-+-.+.-.+||+=|..... ..|+-+-+++..-... .-|. .++..+|..
T Consensus 13 sf~~a~~~l--p--~~~R~~~~alYaf~r~~Ddi~D~~~~~~~~~~~~L~~w~~~l~~~~~~---~~~~--~pv~~al~~ 83 (265)
T cd00683 13 SFYLASRLL--P--PELRRAVCALYAFCRAADDIVDDPAAPPDEKLALLDAFRAELDAAYWG---GAPT--HPVLRALAD 83 (265)
T ss_pred cHHHHHHhC--C--HHHHHHHHHHHHHHHHHHhhhhCCCCCchhHHHHHHHHHHHHHHHHcC---CCCC--ChHHHHHHH
Confidence 455554433 3 234554445667777799999975422 2344444444431110 1111 145566655
Q ss_pred hHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHHHHHH
Q 006994 413 STNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYT 481 (622)
Q Consensus 413 ~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~~~~~ 481 (622)
+..+ .+ --++.+.+++.|+..... ....||++|.......+.|+...++...+
T Consensus 84 ~~~~--------~~-----l~~~~~~~li~g~~~Dl~---~~~~~t~~eL~~Y~~~vAg~vg~l~~~i~ 136 (265)
T cd00683 84 LARR--------YG-----IPREPFRDLLAGMAMDLD---KRRYETLDELDEYCYYVAGVVGLMLLRVF 136 (265)
T ss_pred HHHH--------cC-----CCHHHHHHHHHHHHHhCC---CCCCCCHHHHHHHHHHhHHHHHHHHHHHh
Confidence 5531 12 122456777777764433 45678998888887777776555554444
No 16
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=74.41 E-value=83 Score=32.51 Aligned_cols=118 Identities=12% Similarity=0.104 Sum_probs=62.2
Q ss_pred hHHHHhccccCCCccchhhhhhhchhhhhhhhcccccCCCHHHH----HHHHHHHhhcCccccccCChhhHHHHHHHhhh
Q 006994 338 NFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDEL----ELFTNAVERWDVNAMDQLPYYMKLCFLVLHNS 413 (622)
Q Consensus 338 ~Yfwa~a~~fEP~~s~~Ri~laK~~~li~iiDD~fD~ygt~eEl----~~ft~ai~rWD~~~~~~LPeymk~~f~aL~~~ 413 (622)
+|++++-... ...|-.+.-+-.+.-.+||+=|..++.++- +-+-+++..-. ..-|. .++..++..+
T Consensus 7 sF~~a~~~lp----~~~R~~~~alYaf~r~~d~i~D~~~~~~~~~~~L~~w~~~l~~~~----~g~~~--~pv~~al~~~ 76 (266)
T TIGR03465 7 SFYYGMRLLP----PERRRAMTALYAFCREVDDIVDEDSDPEVAQAKLAWWRAEIDRLY----AGAPS--HPVARALADP 76 (266)
T ss_pred cHHHHHHHCC----HHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHh----CCCCC--ChHHHHHHHH
Confidence 4555555333 234554555667777899999975444332 22222222211 11121 2455555444
Q ss_pred HHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHHHHHH
Q 006994 414 TNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYT 481 (622)
Q Consensus 414 ~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~~~~~ 481 (622)
+.. .+. -++.+.+++.++.... .....+|++|+......+.|....++...+
T Consensus 77 ~~~--------~~l-----~~~~~~~li~g~~~Dl---~~~~~~t~~dL~~Y~~~vAg~vg~l~~~ll 128 (266)
T TIGR03465 77 ARR--------FDL-----PQEDFLEVIDGMEMDL---EQTRYPDFAELDLYCDRVAGAVGRLSARIF 128 (266)
T ss_pred HHH--------cCC-----CHHHHHHHHHHHHHHc---CCCCCCCHHHHHHHHHHhHHHHHHHHHHHh
Confidence 432 121 1244677777765333 234567999988888777776555544444
No 17
>PLN02632 phytoene synthase
Probab=68.74 E-value=1e+02 Score=33.30 Aligned_cols=107 Identities=11% Similarity=0.121 Sum_probs=57.1
Q ss_pred hhhhhhhchhhhhhhhcccccCCCH----HHHHHHHHHHhhcCccccccCChhhHHHHHHHhhhHHHHHHHHHhhcCccc
Q 006994 354 CRRMSTKANALITTIDDVYDVYGTL----DELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHI 429 (622)
Q Consensus 354 ~Ri~laK~~~li~iiDD~fD~ygt~----eEl~~ft~ai~rWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~k~~g~~~ 429 (622)
.|-.+.-+-.|.-.+||+=|..... ..|+.+-+.+..- .+.-|.. ++..++.+++.+.. .
T Consensus 74 ~R~ai~alYAf~R~~DdI~D~~~~~~~~~~~L~~w~~~l~~~----~~g~~~~--pv~~aL~~~~~~~~--------L-- 137 (334)
T PLN02632 74 RRKAIWAIYVWCRRTDELVDGPNASHITPAALDRWEARLEDL----FDGRPYD--MLDAALADTVSKFP--------L-- 137 (334)
T ss_pred HHHHHHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHHHHHH----hCCCCCC--hHHHHHHHHHHHCC--------C--
Confidence 3444444667777899999964322 2233333333321 1111221 35566655554221 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHHHHHHH
Q 006994 430 IPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTL 482 (622)
Q Consensus 430 ~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~~~~~~ 482 (622)
-++.+.+++.|+..... ....+|++|+......+.|+-..+++..++
T Consensus 138 ---~~~~~~~li~g~~~Dl~---~~~~~t~~eL~~Ycy~vAgtVG~l~l~vlg 184 (334)
T PLN02632 138 ---DIQPFRDMIEGMRMDLV---KSRYENFDELYLYCYYVAGTVGLMSVPVMG 184 (334)
T ss_pred ---ChHHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHhhHHHHHHHHHHhC
Confidence 12345677777653322 345679999888888887765555544443
No 18
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=66.23 E-value=63 Score=33.24 Aligned_cols=121 Identities=14% Similarity=0.115 Sum_probs=75.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHHHHHHH-hCCCCChHHHHhhhhhhhHHHHHH
Q 006994 428 HIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTL-IANPPTKEALQFLEEYPNIIRWPS 506 (622)
Q Consensus 428 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~~~~~~-~G~~l~~e~~e~~~~~p~l~~~~~ 506 (622)
.+...+.+.....+.|-..+..|... ..||.++|++....-+|.....+....+ ++. .+++..+ ..-++-+..+
T Consensus 108 ~~~~~~~~~~~~~~~GQ~~d~~~~~~-~~~~~~~y~~~~~~KT~~l~~~~~~~~a~l~~-~~~~~~~---~l~~~g~~lG 182 (259)
T cd00685 108 RALELFSEAILELVEGQLLDLLSEYD-TDVTEEEYLRIIRLKTAALFAAAPLLGALLAG-ADEEEAE---ALKRFGRNLG 182 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC-CCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC-CCHHHHH---HHHHHHHHHH
Confidence 45667778888999999989988643 5799999999887777765433222211 122 2344332 2356778888
Q ss_pred HHHHHhcCcccchhhhh-cC-----C----CccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006994 507 MIFRLANDLATSSDEVK-RG-----D----VPKAIQCYMHETGASESDAREHIRDLITATWMKMNS 562 (622)
Q Consensus 507 ~i~RL~NDI~S~kkE~~-rG-----d----~~n~V~cyMkE~g~S~EeA~~~i~~mie~~wK~ln~ 562 (622)
...-+.||+..+....+ -| | ..|..-+|.. .+.+...++++++.+..
T Consensus 183 ~afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~T~~~~~~l---------~~~~~~~~~~a~~~l~~ 239 (259)
T cd00685 183 LAFQIQDDILDLFGDPETLGKPVGSDLREGKCTLPVLLAL---------RELAREYEEKALEALKA 239 (259)
T ss_pred HHHHHHHHhhcccCChHHHCCCcchHHHcCCchHHHHHHH---------HHHHHHHHHHHHHHHHc
Confidence 88889999887754321 11 1 1234333333 55667777777766654
No 19
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=65.23 E-value=1.4e+02 Score=32.02 Aligned_cols=89 Identities=9% Similarity=0.133 Sum_probs=57.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHH
Q 006994 428 HIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSM 507 (622)
Q Consensus 428 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~ 507 (622)
.+...+.++...++.|-+.+..|.. ...+|+++|++.-..=+|.....+...-++-...+++..+. .-++-+..++
T Consensus 133 ~~~~~~~~~~~~~~~Gq~~~~~~~~-~~~~~~~~y~~~~~~KTa~L~~~~~~~ga~~ag~~~~~~~~---l~~~G~~lG~ 208 (322)
T TIGR02749 133 EVVKLISKVITDFAEGEIKQGLNQF-DSDLSLEDYLEKSFYKTASLVAASSKAAAVLSDVPSQVAND---LYEYGKHLGL 208 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc-CCCCCHHHHHHHHHccHHHHHHHHHHHHHHHcCcCHHHHHH---HHHHHHHHHH
Confidence 3566777888889999888877653 34579999998766555544322211111111235554433 3567788899
Q ss_pred HHHHhcCcccchh
Q 006994 508 IFRLANDLATSSD 520 (622)
Q Consensus 508 i~RL~NDI~S~kk 520 (622)
..-+.||+..+.-
T Consensus 209 aFQi~DDild~~~ 221 (322)
T TIGR02749 209 AFQVVDDILDFTG 221 (322)
T ss_pred HHHHHHHhccCCC
Confidence 9999999988763
No 20
>PLN02857 octaprenyl-diphosphate synthase
Probab=61.51 E-value=84 Score=35.10 Aligned_cols=88 Identities=10% Similarity=0.136 Sum_probs=56.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHHHHHH-HhCCCCChHHHHhhhhhhhHHHHHH
Q 006994 428 HIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYT-LIANPPTKEALQFLEEYPNIIRWPS 506 (622)
Q Consensus 428 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~~~~~-~~G~~l~~e~~e~~~~~p~l~~~~~ 506 (622)
.+...+.++..+++.|-+.+..+.. ...++.++|++....=+|.....+...- .++ ..+++..+. ..++-+..+
T Consensus 227 ~~~~~~s~~~~~l~~Gei~q~~~~~-~~~~s~~~Yl~~i~~KTa~L~~~a~~~galla-ga~~~~~~~---l~~fG~~LG 301 (416)
T PLN02857 227 EVIKLISQVIKDFASGEIKQASSLF-DCDVTLDEYLLKSYYKTASLIAASTKSAAIFS-GVDSSVKEQ---MYEYGKNLG 301 (416)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhccc-CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHc-CCCHHHHHH---HHHHHHHHH
Confidence 3456677778888888777777764 4457999999877665554432221111 122 235554433 356778888
Q ss_pred HHHHHhcCcccchh
Q 006994 507 MIFRLANDLATSSD 520 (622)
Q Consensus 507 ~i~RL~NDI~S~kk 520 (622)
+..-+.||+..+..
T Consensus 302 iAFQI~DDiLD~~~ 315 (416)
T PLN02857 302 LAFQVVDDILDFTQ 315 (416)
T ss_pred HHHHHHHHHHhhcC
Confidence 88889999988763
No 21
>PLN02890 geranyl diphosphate synthase
Probab=54.51 E-value=1.8e+02 Score=32.55 Aligned_cols=89 Identities=12% Similarity=0.141 Sum_probs=60.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHHHHH-HHhCCCCChHHHHhhhhhhhHHHHHH
Q 006994 428 HIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAY-TLIANPPTKEALQFLEEYPNIIRWPS 506 (622)
Q Consensus 428 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~~~~-~~~G~~l~~e~~e~~~~~p~l~~~~~ 506 (622)
.++..+.++...++.|-+.+..|.. ...+|+++|++....-+|.....+... ..++ ..+++..+.+ -.+-+..+
T Consensus 227 ~~~~~~s~a~~~l~~Gq~ld~~~~~-~~~~s~~~Yl~~i~~KTa~Lf~~s~~~gAila-ga~~~~~~~l---~~fG~~lG 301 (422)
T PLN02890 227 EVVSLLATAVEHLVTGETMQITSSR-EQRRSMDYYMQKTYYKTASLISNSCKAVAILA-GQTAEVAVLA---FEYGRNLG 301 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHc-CcCHHHHHHH---HHHHHHHH
Confidence 4567888899999999999999864 456899999987655555443222111 1122 2355654443 46778888
Q ss_pred HHHHHhcCcccchhh
Q 006994 507 MIFRLANDLATSSDE 521 (622)
Q Consensus 507 ~i~RL~NDI~S~kkE 521 (622)
+..-+.||+..+.-.
T Consensus 302 lAFQI~DDiLD~~g~ 316 (422)
T PLN02890 302 LAFQLIDDVLDFTGT 316 (422)
T ss_pred HHHHHHHHHHhhcCC
Confidence 889999999887544
No 22
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=53.69 E-value=3.1e+02 Score=29.38 Aligned_cols=106 Identities=19% Similarity=0.225 Sum_probs=70.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHHH--HHHHhCCCCChHHHHhhhhhhhHHHHH
Q 006994 428 HIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLH--AYTLIANPPTKEALQFLEEYPNIIRWP 505 (622)
Q Consensus 428 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~~--~~~~~G~~l~~e~~e~~~~~p~l~~~~ 505 (622)
.....+.+....++.|-+.+..|.... +|.++|+++-..=+|.....+. .-...|. +++..+.+ -.+-+..
T Consensus 134 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~--~t~e~y~~~i~~KTa~L~~~a~~~ga~la~~--~~~~~~~l---~~~g~~l 206 (322)
T COG0142 134 EAIKALAEAINGLCGGQALDLAFENKP--VTLEEYLRVIELKTAALFAAAAVLGAILAGA--DEELLEAL---EDYGRNL 206 (322)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHccCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHH---HHHHHHh
Confidence 456778888999999999998886544 9999999887765555443221 1111232 35554443 5678888
Q ss_pred HHHHHHhcCcccchhhhh-cCC---------CccchhhhhhcCCC
Q 006994 506 SMIFRLANDLATSSDEVK-RGD---------VPKAIQCYMHETGA 540 (622)
Q Consensus 506 ~~i~RL~NDI~S~kkE~~-rGd---------~~n~V~cyMkE~g~ 540 (622)
++..-+.||+..+.-+.+ -|. ..+.+.+|.-+.+.
T Consensus 207 GlaFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T~p~l~~l~~~~ 251 (322)
T COG0142 207 GLAFQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLLALEKAN 251 (322)
T ss_pred hHHHHHHHHhhcCCCChHHhCCCcchHHHcCCchHHHHHHHHcCc
Confidence 999999999988876432 232 24666666665533
No 23
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=45.42 E-value=4.1e+02 Score=28.40 Aligned_cols=87 Identities=8% Similarity=0.059 Sum_probs=56.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHHHHHHH--hCCCCChHHHHhhhhhhhHHHHH
Q 006994 428 HIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTL--IANPPTKEALQFLEEYPNIIRWP 505 (622)
Q Consensus 428 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~ 505 (622)
.+...+.++...++.|-..+..|.. +..+|.++|++.-..-+|..+..+ +..| ++ ..+++..+. .-++-+..
T Consensus 129 ~~~~~~~~~~~~~~~Gq~~~~~~~~-~~~~~~~~Y~~~i~~KTa~L~~~~-~~~ga~~a-g~~~~~~~~---l~~~g~~l 202 (319)
T TIGR02748 129 RAHQILSHTIVEVCRGEIEQIKDKY-NFDQNLRTYLRRIKRKTALLIAAS-CQLGAIAS-GANEAIVKK---LYWFGYYV 202 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHc-CCCHHHHHH---HHHHHHHH
Confidence 3456778888889999888888753 345799999987766666543222 2222 22 224443333 35677788
Q ss_pred HHHHHHhcCcccchh
Q 006994 506 SMIFRLANDLATSSD 520 (622)
Q Consensus 506 ~~i~RL~NDI~S~kk 520 (622)
++..-+.||+..+..
T Consensus 203 G~aFQI~DDilD~~~ 217 (319)
T TIGR02748 203 GMSYQITDDILDFVG 217 (319)
T ss_pred HHHHHHHHHHHHccC
Confidence 888889999977654
No 24
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=45.25 E-value=15 Score=35.38 Aligned_cols=30 Identities=23% Similarity=0.507 Sum_probs=25.5
Q ss_pred hcCCCccchhhhhhcC-CCCHHHHHHHHHHH
Q 006994 523 KRGDVPKAIQCYMHET-GASESDAREHIRDL 552 (622)
Q Consensus 523 ~rGd~~n~V~cyMkE~-g~S~EeA~~~i~~m 552 (622)
.||-.+..|.||+-++ +.|.|+|.++++++
T Consensus 119 GRtRSaTvV~cYLmq~~~wtpe~A~~~vr~i 149 (183)
T KOG1719|consen 119 GRTRSATVVACYLMQHKNWTPEAAVEHVRKI 149 (183)
T ss_pred CCccchhhhhhhhhhhcCCCHHHHHHHHHhc
Confidence 4566789999998877 99999999999873
No 25
>PF10776 DUF2600: Protein of unknown function (DUF2600); InterPro: IPR019712 This is a bacterial family of proteins. Some members in the family are annotated as YtpB, however no function is currently known.
Probab=44.46 E-value=3.9e+02 Score=28.95 Aligned_cols=95 Identities=14% Similarity=0.185 Sum_probs=59.8
Q ss_pred hCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCcccchhhhhcCCCccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006994 483 IANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDAREHIRDLITATWMKMNS 562 (622)
Q Consensus 483 ~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rGd~~n~V~cyMkE~g~S~EeA~~~i~~mie~~wK~ln~ 562 (622)
+...++++..+.+. ....-+++-+--|++-....+.+...||. |.|..|- +.+++.+.+...++++-+...+
T Consensus 202 ~~p~~t~~~a~~i~--~aYFPwI~gLHILLDy~IDq~EDr~~GdL-NFv~YY~-----~~~~~~~Rl~~f~~~A~~~~~~ 273 (330)
T PF10776_consen 202 ADPDLTPEDAEKIK--DAYFPWICGLHILLDYFIDQEEDREGGDL-NFVFYYP-----DEEEMEERLKYFVEKALEQASR 273 (330)
T ss_pred cCCCCCHHHHHHHH--HcccHHHHHHHHHHHHHhhhHhHhcCCCc-eeeeeCC-----CHHHHHHHHHHHHHHHHHHHHh
Confidence 45668888777653 33444445555566666666666666665 9996654 5679999999999999877654
Q ss_pred hhcCCCCCcccccHHHHHHHHHHhhhhccccccCCC
Q 006994 563 KDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDG 598 (622)
Q Consensus 563 e~l~~~~~~~~~p~~~~~~~lN~aR~~~~~Y~~~D~ 598 (622)
+|.+-....++ |.+--||-.++.
T Consensus 274 -----------Lp~~~fHr~iv--~GLla~YLSD~K 296 (330)
T PF10776_consen 274 -----------LPYPKFHRMIV--RGLLAMYLSDPK 296 (330)
T ss_pred -----------CCCchHHHHHH--HHHHHHHhCCHh
Confidence 44443333333 445466865443
No 26
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=40.20 E-value=21 Score=35.62 Aligned_cols=42 Identities=26% Similarity=0.347 Sum_probs=26.8
Q ss_pred HhcCcccchhhhhc-CCCccchhhhhhcCCCCHHHHHHHHHHH
Q 006994 511 LANDLATSSDEVKR-GDVPKAIQCYMHETGASESDAREHIRDL 552 (622)
Q Consensus 511 L~NDI~S~kkE~~r-Gd~~n~V~cyMkE~g~S~EeA~~~i~~m 552 (622)
|--++..+|+..+. ..+.-+=.+.|+++|+|++||+.+++++
T Consensus 130 L~~el~~~k~~L~~rK~ierAKglLM~~~g~sE~EAy~~lR~~ 172 (194)
T COG3707 130 LRRELAKLKDRLEERKVIERAKGLLMKRRGLSEEEAYKLLRRT 172 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 33444444444322 1122333479999999999999999885
No 27
>CHL00151 preA prenyl transferase; Reviewed
Probab=39.14 E-value=5.1e+02 Score=27.69 Aligned_cols=87 Identities=8% Similarity=0.173 Sum_probs=54.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHH-HHHHHhCCCCChHHHHhhhhhhhHHHHHHH
Q 006994 429 IIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILL-HAYTLIANPPTKEALQFLEEYPNIIRWPSM 507 (622)
Q Consensus 429 ~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~-~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~ 507 (622)
....+.++...++.+-+.+..|.. ..-+|.++|+..-..=+|....++ .+-..++. .+++..+. .-++-+..++
T Consensus 135 ~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag-~~~~~~~~---l~~~G~~lG~ 209 (323)
T CHL00151 135 VVKLISKVITDFAEGEIRQGLVQF-DTTLSILNYIEKSFYKTASLIAASCKAAALLSD-ADEKDHND---FYLYGKHLGL 209 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHHH
Confidence 456777888888888877776642 344789999997554444433222 11111222 34444333 3567788888
Q ss_pred HHHHhcCcccchh
Q 006994 508 IFRLANDLATSSD 520 (622)
Q Consensus 508 i~RL~NDI~S~kk 520 (622)
..-+.||+..+.-
T Consensus 210 aFQi~DDilD~~~ 222 (323)
T CHL00151 210 AFQIIDDVLDITS 222 (323)
T ss_pred HHHHHHHHhhccc
Confidence 9999999988754
No 28
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=36.42 E-value=24 Score=27.68 Aligned_cols=28 Identities=25% Similarity=0.264 Sum_probs=20.8
Q ss_pred CccchhhhhhcCCCCHHHHHHHHHHHHH
Q 006994 527 VPKAIQCYMHETGASESDAREHIRDLIT 554 (622)
Q Consensus 527 ~~n~V~cyMkE~g~S~EeA~~~i~~mie 554 (622)
+.-++.+.|..+|+|+++|.+.+++.-.
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~Am 42 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQAM 42 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 3456778999999999999999887543
No 29
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=30.08 E-value=2.5e+02 Score=33.17 Aligned_cols=117 Identities=15% Similarity=0.212 Sum_probs=77.4
Q ss_pred hHHHHHHHHHhCCccccHHHHHHHHHHHHhhcCCCccccccccccCChHHHHHHHHHHHhcCccccccc-cccccccccc
Q 006994 115 QLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQD-VRVAVGTLSL 193 (622)
Q Consensus 115 ~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~r~~~~~dl~~tal~FRLLR~hGy~vS~~d-~~~~~~vf~~ 193 (622)
....+-.|-+.|.... ..-|+..++++-+....+|.++||-. ..++|.|+..-..|+..|.++.. . .+-|+.=+.+
T Consensus 454 Ta~~l~al~~~g~~~~-~~~i~rav~~L~~~Q~~dG~W~g~wg-~~~~Y~T~~al~aL~~~g~~~~~-~~i~rAv~wL~~ 530 (635)
T TIGR01507 454 TARVLECLGSFGYDDA-WPVIERAVEYLKREQEPDGSWFGRWG-VNYLYGTGAVLSALKAVGIDTRE-PYIQKALAWLES 530 (635)
T ss_pred HHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCCCCCCccCCC-CccccHHHHHHHHHHHcCCCccc-HHHHHHHHHHHH
Confidence 4566667777776555 77899999999887666675556633 46799999999999999987655 2 1122323444
Q ss_pred cccccccccccc----------------ccchHHHHHHHHhhhhcCcccHHHHHHHHHHhH
Q 006994 194 FMDEKGKLKSCL----------------GDDIKGILALYEAAYLLVEEESNIFNEAINFTT 238 (622)
Q Consensus 194 F~d~~G~F~~~l----------------~~dv~glL~LyeAs~l~~~gE~~iLdeA~~Ft~ 238 (622)
-..++|.|.++. ..-.-+|+.|..|-+. +. ..+++|..|=.
T Consensus 531 ~Q~~DGGWge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag~~---~~-~~I~rav~~L~ 587 (635)
T TIGR01507 531 HQNPDGGWGEDCRSYEDPAYAGKGASTASQTAWALIALIAAGRA---ES-EAARRGVQYLV 587 (635)
T ss_pred hcCCCCCCCCCCcccccccccCCCCCcHHHHHHHHHHHHHhCCC---Cc-HHHHHHHHHHH
Confidence 556678875431 1334578999877542 34 56788876533
No 30
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=29.84 E-value=35 Score=23.41 Aligned_cols=18 Identities=33% Similarity=0.577 Sum_probs=14.5
Q ss_pred hhhhcCCCCHHHHHHHHH
Q 006994 533 CYMHETGASESDAREHIR 550 (622)
Q Consensus 533 cyMkE~g~S~EeA~~~i~ 550 (622)
-|.++||+|.||-.+.+.
T Consensus 9 rYV~eh~ls~ee~~~RL~ 26 (28)
T PF12368_consen 9 RYVKEHGLSEEEVAERLA 26 (28)
T ss_pred hhHHhcCCCHHHHHHHHH
Confidence 588999999998766554
No 31
>KOG3951 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.29 E-value=1.3e+02 Score=31.41 Aligned_cols=58 Identities=31% Similarity=0.413 Sum_probs=41.2
Q ss_pred cccccccccccccchHHHHHHHHhhhhcCcccHHHHHHHHHHhHHHHHHHHhcCCCCCCCcHHHHHHHHcc
Q 006994 195 MDEKGKLKSCLGDDIKGILALYEAAYLLVEEESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALE 265 (622)
Q Consensus 195 ~d~~G~F~~~l~~dv~glL~LyeAs~l~~~gE~~iLdeA~~Ft~~~L~~~~~~~~~~~~~~l~~~V~~aL~ 265 (622)
.+.+|-|....+-|+||-..|-.+-- |.-.+-|=.|..||++||. +.+-++.|++-|+
T Consensus 263 Vhp~GAFv~~s~iDmkgcvrllk~q~---p~~~e~LLnaLRfTTKHlN----------desTpK~ir~ll~ 320 (321)
T KOG3951|consen 263 VHPNGAFVSNSSIDMKGCVRLLKLQP---PEQSECLLNALRFTTKHLN----------DESTPKSIRHLLE 320 (321)
T ss_pred ccccccccccCcCcHHHHHHHHHcCC---chhhHHHHHHHHHHHhhcC----------CCCChHHHHHHhc
Confidence 46789998777889999999986543 3322578889999999983 3334555665553
No 32
>PF03578 HGWP: HGWP repeat; InterPro: IPR005213 This short (30 amino acids) repeat is found in a number of plant proteins. It contains a conserved HGWP motif, hence its name. The function of these proteins is unknown.
Probab=24.37 E-value=26 Score=24.04 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=14.1
Q ss_pred HHHhcCccccccccccccccc
Q 006994 171 LLRQHGFDMHAQDVRVAVGTL 191 (622)
Q Consensus 171 LLR~hGy~vS~~d~~~~~~vf 191 (622)
-||.||.-|.+ .+..+.||
T Consensus 8 c~rLhGW~i~p--pllgv~vF 26 (28)
T PF03578_consen 8 CLRLHGWPIMP--PLLGVYVF 26 (28)
T ss_pred heeeccCcccC--cceEEEec
Confidence 48999999999 65555444
No 33
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.42 E-value=77 Score=27.02 Aligned_cols=63 Identities=33% Similarity=0.563 Sum_probs=35.8
Q ss_pred HHHHHHHhCCccccHHHHHHHHHHHHhhcCCCccccccccccCChHHHHHHHHHHHhcCccccccccccccccccccccc
Q 006994 118 IVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQDVRVAVGTLSLFMDE 197 (622)
Q Consensus 118 lID~lqRLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~r~~~~~dl~~tal~FRLLR~hGy~vS~~d~~~~~~vf~~F~d~ 197 (622)
+|.+++|| |+|++.+-+.|- |+| -=++-|||+|-. .+-++..=++ |.
T Consensus 19 fIerIERl------EeEk~~i~~dik-----------------dvy------~eakg~GFDvKa--~r~iirlrK~--D~ 65 (85)
T COG3750 19 FIERIERL------EEEKKTIADDIK-----------------DVY------AEAKGHGFDVKA--VRTIIRLRKL--DK 65 (85)
T ss_pred HHHHHHHH------HHHHHHHHHHHH-----------------HHH------HHHHcCCccHHH--HHHHHHHHhh--hH
Confidence 67778887 678777665552 222 224557888776 4444433221 21
Q ss_pred ccccccccccchHHHHHHHHhh
Q 006994 198 KGKLKSCLGDDIKGILALYEAA 219 (622)
Q Consensus 198 ~G~F~~~l~~dv~glL~LyeAs 219 (622)
+ + ...-..||.||.++
T Consensus 66 ~-e-----r~EedAildlY~~a 81 (85)
T COG3750 66 A-E-----RQEEDAILDLYMDA 81 (85)
T ss_pred H-H-----HHHHHHHHHHHHHH
Confidence 1 1 23346799999876
No 34
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=21.54 E-value=2.9e+02 Score=25.38 Aligned_cols=83 Identities=24% Similarity=0.339 Sum_probs=45.9
Q ss_pred HHHHHHHHHhCCccccHHHHHHHHHHHHhhcCCCccccccc-cccCCh--HHHHHHHHHHHhcCcccccccccccccccc
Q 006994 116 LEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKE-KQESSL--YAVALEFRLLRQHGFDMHAQDVRVAVGTLS 192 (622)
Q Consensus 116 L~lID~lqRLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~r~-~~~~dl--~~tal~FRLLR~hGy~vS~~d~~~~~~vf~ 192 (622)
-.+|+.|++|||++.-..= |-.+-+. +... .|+ .....| -.+|++-|.||.+| +|.- - --+
T Consensus 14 ~~~ie~L~~lgi~R~vA~t----lv~L~~~--~E~s--S~~IE~~sgLRQPEVSiAMr~Lre~g-WV~~-R------~eK 77 (124)
T COG4738 14 YEIIELLRILGIPRNVATT----LVCLAKG--DEAS--SREIERVSGLRQPEVSIAMRYLRENG-WVDE-R------EEK 77 (124)
T ss_pred HHHHHHHHHcCCCchHHHH----HHHHhcC--cchh--hhhhHHhhcCCCchhHHHHHHHHHcc-ccch-H------Hhc
Confidence 4689999999999964332 2222111 1000 000 001122 46899999999999 5544 3 344
Q ss_pred cccccccc-ccc-ccccchHHHHHHH
Q 006994 193 LFMDEKGK-LKS-CLGDDIKGILALY 216 (622)
Q Consensus 193 ~F~d~~G~-F~~-~l~~dv~glL~Ly 216 (622)
| ++ +|. .|. .|+.+...+++-+
T Consensus 78 K-kG-KGRPik~Y~Lt~~~~eIvs~i 101 (124)
T COG4738 78 K-KG-KGRPIKLYRLTVPFDEIVSEI 101 (124)
T ss_pred c-cC-CCCCceEEEecCcHHHHHHHH
Confidence 4 33 354 332 4566776666665
No 35
>PRK10581 geranyltranstransferase; Provisional
Probab=21.34 E-value=6.9e+02 Score=26.49 Aligned_cols=113 Identities=16% Similarity=0.146 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHHHHHHH--hCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCc
Q 006994 438 ADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTL--IANPPTKEALQFLEEYPNIIRWPSMIFRLANDL 515 (622)
Q Consensus 438 ~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 515 (622)
..++.|-+.+..|. +..+|.++|++.-..=+|.....+ +..| ++..-+++..+. ..++-+..++..-+.|||
T Consensus 152 ~~l~~GQ~ld~~~~--~~~~~~~~y~~i~~~KTa~L~~~~-~~~gailag~~~~~~~~~---l~~~g~~lG~aFQI~DDi 225 (299)
T PRK10581 152 AGMCGGQALDLEAE--GKQVPLDALERIHRHKTGALIRAA-VRLGALSAGDKGRRALPV---LDRYAESIGLAFQVQDDI 225 (299)
T ss_pred chhhHhhHHHHhcc--CCCCCHHHHHHHHHHhhHHHHHHH-HHHHHHHcCCCcHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 45777777777775 346899999987654444433222 1111 222212333333 356788888899999999
Q ss_pred ccchhh-hhcCC---------CccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006994 516 ATSSDE-VKRGD---------VPKAIQCYMHETGASESDAREHIRDLITATWMKMNS 562 (622)
Q Consensus 516 ~S~kkE-~~rGd---------~~n~V~cyMkE~g~S~EeA~~~i~~mie~~wK~ln~ 562 (622)
..+... ..-|. ..+.+.+| ..|.|.+.+++.++.+.+.+..
T Consensus 226 lD~~g~~~~~GK~~g~Dl~~gk~T~p~l~------~~e~a~~~a~~~~~~A~~~l~~ 276 (299)
T PRK10581 226 LDVVGDTATLGKRQGADQQLGKSTYPALL------GLEQARKKARDLIDDARQSLDQ 276 (299)
T ss_pred ccccCChHHHCCCcchhhhcCCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 987543 22222 12333333 2478888899999988877655
No 36
>PF06603 UpxZ: UpxZ family of transcription anti-terminator antagonists; InterPro: IPR010570 This family consists of several hypothetical proteins of unknown function and seems to be specific to Bacteroides species.
Probab=21.08 E-value=1e+02 Score=27.76 Aligned_cols=61 Identities=13% Similarity=0.300 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHhcCcccchhhhhcCCCccc-hhhhhhcCCCCH---HHHHHHHHHHHHHHHHHHHH
Q 006994 500 NIIRWPSMIFRLANDLATSSDEVKRGDVPKA-IQCYMHETGASE---SDAREHIRDLITATWMKMNS 562 (622)
Q Consensus 500 ~l~~~~~~i~RL~NDI~S~kkE~~rGd~~n~-V~cyMkE~g~S~---EeA~~~i~~mie~~wK~ln~ 562 (622)
++.++-..+.+.+||+.+.+-+-..- -||. +.+.| -+++|. -|--++++.+++.+|..+..
T Consensus 26 ~~~rLN~ev~~~~~~Ly~~~G~t~Ee-eA~lCLaLLm-GYnat~yd~geke~~~Q~vL~Rs~~vL~~ 90 (106)
T PF06603_consen 26 DFSRLNKEVYEQSNDLYSQHGSTPEE-EANLCLALLM-GYNATIYDNGEKEEKKQEVLDRSWEVLDK 90 (106)
T ss_pred HHHHHhHHHHHHHHHHHhccCCCHHH-HHHHHHHHHH-hccchhhhCccHHHHHHHHHHHHHHHHHh
Confidence 46777888889999998764322111 1222 22222 233432 23456799999999977654
No 37
>smart00463 SMR Small MutS-related domain.
Probab=20.77 E-value=1.1e+02 Score=25.27 Aligned_cols=23 Identities=13% Similarity=0.240 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 006994 538 TGASESDAREHIRDLITATWMKM 560 (622)
Q Consensus 538 ~g~S~EeA~~~i~~mie~~wK~l 560 (622)
||++.++|+..+...++++++.-
T Consensus 7 HG~~~~eA~~~l~~~l~~~~~~~ 29 (80)
T smart00463 7 HGLTVEEALTALDKFLNNARLKG 29 (80)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcC
Confidence 79999999999999999988754
No 38
>COG5123 TOA2 Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=20.68 E-value=75 Score=28.29 Aligned_cols=42 Identities=17% Similarity=0.195 Sum_probs=27.1
Q ss_pred hHHHHHHHHhhhhcCcccHHHHHHHHHHhHHHHHHHHhcCCCCCCCcHHHHHHHHc
Q 006994 209 IKGILALYEAAYLLVEEESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHAL 264 (622)
Q Consensus 209 v~glL~LyeAs~l~~~gE~~iLdeA~~Ft~~~L~~~~~~~~~~~~~~l~~~V~~aL 264 (622)
+.|+++|||-|-++--=| ++||+- ++.| .++|+|+..|-...
T Consensus 1 v~~yYElYRrs~ig~~L~-dalD~l-----------is~g--~isp~lam~vLetF 42 (113)
T COG5123 1 VPGYYELYRRSMIGKVLE-DALDEL-----------ISAG--VISPNLAMHVLETF 42 (113)
T ss_pred CccHHHHHHHHHHHHHHH-HHHHHH-----------HhcC--CcCHHHHHHHHHHh
Confidence 458999999998884445 555553 3332 36777776665443
Done!