Query 006994
Match_columns 622
No_of_seqs 252 out of 894
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 14:23:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006994.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006994hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m00_A Aristolochene synthase; 100.0 2E-165 8E-170 1371.0 50.0 535 54-619 12-550 (550)
2 3g4d_A (+)-delta-cadinene synt 100.0 2E-165 8E-170 1372.2 49.8 532 59-619 21-554 (554)
3 3n0f_A Isoprene synthase; terp 100.0 1E-165 4E-170 1376.7 46.2 535 59-618 14-551 (555)
4 2ong_A 4S-limonene synthase; m 100.0 9E-161 3E-165 1343.6 51.2 540 59-618 1-543 (543)
5 1n1b_A (+)-bornyl diphosphate 100.0 2E-159 7E-164 1332.2 45.0 541 59-618 5-549 (549)
6 2j5c_A 1,8-cineole synthase; t 100.0 1E-158 4E-163 1329.4 42.0 530 59-618 34-569 (569)
7 3p5p_A Taxadiene synthase; cla 100.0 3E-146 1E-150 1259.4 50.6 518 88-620 221-757 (764)
8 3sdr_A Alpha-bisabolene syntha 100.0 2E-146 7E-151 1268.2 48.6 520 88-619 273-817 (817)
9 3s9v_A Abietadiene synthase, c 100.0 9E-146 3E-150 1258.7 49.3 518 88-618 245-785 (785)
10 3pya_A ENT-copalyl diphosphate 100.0 4E-113 1E-117 975.5 37.1 488 63-618 194-720 (727)
11 1ps1_A Pentalenene synthase; a 100.0 7.9E-50 2.7E-54 422.1 16.4 250 307-564 16-270 (337)
12 1di1_A Aristolochene synthase; 100.0 1.9E-48 6.3E-53 404.7 17.8 241 309-564 14-264 (300)
13 3bny_A Aristolochene synthase; 100.0 1.5E-46 5E-51 394.4 18.0 242 308-564 27-278 (320)
14 3kb9_A EPI-isozizaene synthase 100.0 2E-44 7E-49 388.4 17.0 243 316-564 66-312 (382)
15 3v1v_A 2-MIB synthase, 2-methy 100.0 9.4E-31 3.2E-35 285.4 16.8 241 315-564 134-390 (433)
16 1yyq_A Trichodiene synthase; t 99.6 7.4E-16 2.5E-20 164.9 12.9 230 314-563 33-276 (374)
17 3sdr_A Alpha-bisabolene syntha 97.8 6.2E-06 2.1E-10 96.1 2.1 94 59-156 24-123 (817)
18 3acx_A Dehydrosqualene synthas 80.7 28 0.00097 35.0 14.6 191 338-562 27-231 (293)
19 3lmd_A Geranylgeranyl pyrophos 80.3 14 0.00048 38.8 12.4 87 428-520 160-247 (360)
20 4hd1_A Squalene synthase HPNC; 78.5 59 0.002 32.7 16.4 106 354-481 40-147 (294)
21 3ipi_A Geranyltranstransferase 73.0 28 0.00094 35.5 11.9 126 428-561 127-261 (295)
22 3mzv_A Decaprenyl diphosphate 64.1 79 0.0027 32.7 13.4 88 428-520 139-227 (341)
23 3rmg_A Octaprenyl-diphosphate 62.7 60 0.002 33.5 12.1 90 427-521 132-222 (334)
24 3oyr_A Trans-isoprenyl diphosp 62.5 85 0.0029 32.6 13.2 87 428-520 151-239 (345)
25 2ftz_A Geranyltranstransferase 62.2 55 0.0019 33.1 11.4 121 428-562 134-264 (284)
26 3m0g_A Farnesyl diphosphate sy 60.4 31 0.0011 35.1 9.3 118 431-562 138-269 (297)
27 3p8l_A Geranyltranstransferase 58.3 50 0.0017 33.7 10.4 113 438-562 156-279 (302)
28 1rtr_A Geranyltranstransferase 55.8 38 0.0013 34.4 9.1 112 438-562 148-271 (301)
29 3lsn_A Geranyltranstransferase 54.1 52 0.0018 33.6 9.7 112 439-561 153-275 (304)
30 3ts7_A Geranyltranstransferase 53.6 62 0.0021 33.4 10.3 112 438-561 158-281 (324)
31 2h8o_A Geranyltranstransferase 50.7 59 0.002 33.6 9.6 112 438-562 192-315 (335)
32 3pko_A Geranylgeranyl pyrophos 48.6 1.4E+02 0.0049 30.6 12.2 86 428-519 143-230 (334)
33 4f62_A Geranyltranstransferase 47.8 71 0.0024 32.8 9.6 113 439-562 152-275 (317)
34 4dhd_A Polyprenyl synthetase; 46.7 74 0.0025 33.2 9.7 87 429-519 133-231 (358)
35 1wy0_A Geranylgeranyl pyrophos 44.4 75 0.0026 32.7 9.3 87 429-520 138-225 (342)
36 3npk_A Geranyltranstransferase 43.4 1.7E+02 0.0058 29.5 11.5 118 432-561 137-265 (291)
37 3llw_A Geranyltranstransferase 42.8 62 0.0021 33.1 8.2 115 437-562 158-281 (311)
38 3lom_A Geranyltranstransferase 42.6 88 0.003 32.0 9.3 113 438-561 158-282 (313)
39 1pd3_A Nonstructural protein N 41.1 24 0.00081 26.6 3.3 33 89-125 16-48 (58)
40 3p8r_A Geranyltranstransferase 40.5 54 0.0019 33.4 7.3 113 438-562 158-282 (302)
41 3uca_A Geranyltranstransferase 39.5 1.1E+02 0.0038 31.4 9.5 114 438-562 180-304 (324)
42 3pde_A Farnesyl-diphosphate sy 38.8 1.2E+02 0.0041 31.0 9.5 113 438-562 155-278 (309)
43 1rqj_A Geranyltranstransferase 33.0 1.3E+02 0.0044 30.4 8.7 112 438-562 152-276 (299)
44 3nf2_A Putative polyprenyl syn 31.4 1E+02 0.0034 32.1 7.7 85 429-519 144-230 (352)
45 2j1p_A Geranylgeranyl pyrophos 30.3 46 0.0016 33.7 4.8 110 439-562 161-272 (293)
46 3s9v_A Abietadiene synthase, c 30.0 18 0.00063 41.9 1.9 90 63-156 4-96 (785)
47 1c07_A Protein (epidermal grow 29.4 2.2E+02 0.0075 22.8 8.7 60 111-181 25-85 (95)
48 3apz_A Geranyl diphosphate syn 28.4 2E+02 0.007 29.5 9.4 88 428-520 153-241 (348)
49 2q80_A Geranylgeranyl pyrophos 26.7 2.2E+02 0.0077 28.6 9.2 85 427-519 110-195 (301)
50 2e8v_A Geranylgeranyl pyrophos 25.6 1.2E+02 0.0041 31.2 7.0 87 429-520 132-221 (340)
51 3kra_B Geranyl diphosphate syn 23.9 84 0.0029 31.5 5.3 94 439-561 150-244 (274)
52 3aqb_B Component B of hexapren 23.9 1.7E+02 0.0057 29.9 7.6 88 428-520 130-218 (325)
53 1fi6_A EH domain protein REPS1 22.9 1.7E+02 0.006 23.2 6.2 60 111-181 24-83 (92)
54 1qjt_A EH1, epidermal growth f 21.3 3E+02 0.01 22.4 7.5 61 111-183 26-86 (99)
No 1
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=2.4e-165 Score=1371.03 Aligned_cols=535 Identities=35% Similarity=0.657 Sum_probs=509.4
Q ss_pred ccccccCCCCCCCCCCCCcCccccCCchhhhhHHHHHHHHHHHHHHHHhhcccccccChhhhHHHHHHHHHhCCccccHH
Q 006994 54 EKAISNRRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIVDNLQRLGVSYHFED 133 (622)
Q Consensus 54 ~~~~~~r~~~~~~ps~w~~~fl~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~~~~~~~~L~lID~lqRLGi~~hF~~ 133 (622)
++.+ .||++|||||+|||+||+++++++..+.+.+++++||++||+||.+.. .|++++|+|||+||||||+|||++
T Consensus 12 ~~~~-~R~~~~~~ps~W~d~fl~~~~~~~~~~~~~~~~e~Lk~eVr~~l~~~~---~~~~~~L~lID~lqrLGi~~hF~~ 87 (550)
T 3m00_A 12 EEEI-VRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATG---MKLADTLNLIDTIERLGISYHFEK 87 (550)
T ss_dssp -----CCCCCCCCCCTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHTCSS---CCHHHHHHHHHHHHHTTCGGGCHH
T ss_pred cccc-CCCCCCCCcccccccccccCCcchhhHHHHHHHHHHHHHHHHHHHhcc---cCHHHHHHHHHHHHHcCchhhhHH
Confidence 4455 899999999999999999988778888899999999999999997532 689999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccccccccccCChHHHHHHHHHHHhcCcccccccccccccccccccccccccccccccchHHHH
Q 006994 134 EIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGIL 213 (622)
Q Consensus 134 EI~~~L~~i~~~~~~~~~~~~r~~~~~dl~~tal~FRLLR~hGy~vS~~d~~~~~~vf~~F~d~~G~F~~~l~~dv~glL 213 (622)
||+++|++||+.|.+ ..||++|||+|||||||||+||| | ||++|+|++|+|++++.+||+|||
T Consensus 88 EI~~~L~~i~~~~~~----------~~dl~~~al~FRLLR~hGy~VS~-d------vf~~F~~~~G~F~~~l~~d~~glL 150 (550)
T 3m00_A 88 EIDDILDQIYNQNSN----------CNDLCTSALQFRLLRQHGFNISP-E------IFSKFQDENGKFKESLASDVLGLL 150 (550)
T ss_dssp HHHHHHHHHHHHCCC----------CSSHHHHHHHHHHHHHTTCCCCG-G------GGGGGBCTTSCBCGGGGGCHHHHH
T ss_pred HHHHHHHHHHHhccc----------CCCHHHHHHHHHHHHhcCCCCCh-H------HhhhccccCCCccccchhchHHHH
Confidence 999999999998753 37999999999999999999999 9 999999999999999999999999
Q ss_pred HHHHhhhhcCcccHHHHHHHHHHhHHHHHHHHhcCCCCCCCcHHHHHHHHccCCcccccchHHHHHHHH-HhcCCCCCcH
Q 006994 214 ALYEAAYLLVEEESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFID-MYQRGPDVNQ 292 (622)
Q Consensus 214 ~LyeAs~l~~~gE~~iLdeA~~Ft~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~Rlear~yI~-~Y~~~~~~n~ 292 (622)
+|||||||++||| +|||||+.||++||++.+.+ ++++|+++|+|||++|||+++||||||+||+ +|++++++|+
T Consensus 151 ~LYeAs~l~~~gE-~iLdeA~~fs~~~L~~~~~~----~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~~Y~~~~~~n~ 225 (550)
T 3m00_A 151 NLYEASHVRTHAD-DILEDALAFSTIHLESAAPH----LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNN 225 (550)
T ss_dssp HHHHHHTTCCTTC-GGGTTHHHHHHHHHHHHGGG----CCTTHHHHHHHHHHSCSTTSCHHHHHHHHHHHTGGGCTTCCH
T ss_pred HHHHHHhcCCCCc-HHHHHHHHHHHHHHHHHHhc----cCccHHHHHHHHhCCCccCCchHHHHHHHHHHHhcccccccH
Confidence 9999999999999 99999999999999998876 6788999999999999999999999999999 9999999999
Q ss_pred HHHHHHHhhhHHHHHHhHHHHHHHHHHHhhcCCCC-cchhhhhhhHhHHHHhccccCCCccchhhhhhhchhhhhhhhcc
Q 006994 293 VLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDV 371 (622)
Q Consensus 293 ~lLelAklDFn~~Q~~hq~El~~lsrWwk~l~l~~-l~faRdRlve~Yfwa~a~~fEP~~s~~Ri~laK~~~li~iiDD~ 371 (622)
+||||||||||+||++||+||++++||||++||.+ |||||||++|||||++|++|||+||.+|++|||+++|++++||+
T Consensus 226 ~lLelAkldFn~~Q~~hq~EL~~l~rWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~ 305 (550)
T 3m00_A 226 VLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDT 305 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCccccCcHHHhHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999976 99999999999999999999999999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHHhhcCccccccCChhhHHHHHHHhhhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHh
Q 006994 372 YDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWY 451 (622)
Q Consensus 372 fD~ygt~eEl~~ft~ai~rWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~ 451 (622)
||+|||+|||+.||+||+|||++++++||+|||+||.+|+++++|++.++.+.+|+++++|++++|+++++||++||+|+
T Consensus 306 yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~ 385 (550)
T 3m00_A 306 FDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVESTWF 385 (550)
T ss_dssp HHTTCCHHHHHHHHHHHHHCCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888888999999999999999999999999
Q ss_pred hcCCCCCHHhhhhhccccchHHHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCcccchhhhhcCCCccch
Q 006994 452 SSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAI 531 (622)
Q Consensus 452 ~~g~vPtleEYl~~~~~SsG~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rGd~~n~V 531 (622)
++||+||+||||+||++|+|++++++++++|+ +.+|+++++|+.++|+|++++++|+||+|||+||++|++||+++|+|
T Consensus 386 ~~gyvPT~EEYl~na~vSsg~~~l~~~~f~g~-~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~vas~V 464 (550)
T 3m00_A 386 IEGYTPPVSEYLSNALATTTYYLLATTSYLGM-KSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGI 464 (550)
T ss_dssp HHTCCCCHHHHHHHHTGGGSHHHHHHHHHHTC-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHSHHHHHHTTCTTSHH
T ss_pred hcCCCCCHHHHHHhccccchHHHHHHHHHHcC-CCCcHHHHHhhcccHHHHHHHhhhheeeccchhHHHHHhcCCcccHH
Confidence 99999999999999999999999999898776 66999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccHHHHHHHHHHhhhhccccccC-CCCCCchh-HHHHh
Q 006994 532 QCYMHETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNG-DGHTIQHK-SKNRV 609 (622)
Q Consensus 532 ~cyMkE~g~S~EeA~~~i~~mie~~wK~ln~e~l~~~~~~~~~p~~~~~~~lN~aR~~~~~Y~~~-D~~t~~~~-~k~~I 609 (622)
+|||+|+|+|+|+|+++++++|+++||+||++++++++ +|++|+++++|+||+++++|+++ ||||.|+. ||++|
T Consensus 465 ~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~----~p~~~~~~~~NlaR~~~~~Y~~~~Dg~t~~~~~~k~~i 540 (550)
T 3m00_A 465 ECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTP----VSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHI 540 (550)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTSSSCS----SCGGGTHHHHHHHHHHHHHTSCC-----CCHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHH
Confidence 99999999999999999999999999999999999877 99999999999999999999998 99999985 99999
Q ss_pred hhhccccccc
Q 006994 610 LPLLVHPVSL 619 (622)
Q Consensus 610 ~~ll~epi~~ 619 (622)
++||++|||+
T Consensus 541 ~~ll~~Pi~~ 550 (550)
T 3m00_A 541 INLLVDSIKI 550 (550)
T ss_dssp HHHHTCCCCC
T ss_pred HHHhhCCCCC
Confidence 9999999986
No 2
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=2.3e-165 Score=1372.22 Aligned_cols=532 Identities=36% Similarity=0.639 Sum_probs=496.8
Q ss_pred cCCCCCCCCCCCCcCccccCCchhhhhHHHHHHHHHHHHHHHHhhcccccccChhhhHHHHHHHHHhCCccccHHHHHHH
Q 006994 59 NRRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIVDNLQRLGVSYHFEDEIKRF 138 (622)
Q Consensus 59 ~r~~~~~~ps~w~~~fl~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~~~~~~~~L~lID~lqRLGi~~hF~~EI~~~ 138 (622)
.||++|||||+|||+||++ ++++..+.+.+++++||++||+||.+.. .|++++|+|||+||||||+|||++||+++
T Consensus 21 ~R~~~~~~ps~W~~~fl~~-~~~~~~~~~~~~~e~Lk~eVr~~l~~~~---~~~~~~l~lID~lqrLGi~~hF~~EI~~~ 96 (554)
T 3g4d_A 21 MRPKADFQPSIWGDLFLNC-PDKNIDAETEKRHQQLKEEVRKMIVAPM---ANSTQKLAFIDSVQRLGVSYHFTKEIEDE 96 (554)
T ss_dssp ----CCCCCCTTTTTTTSC-CC---CHHHHHHHHHHHHHHHHHHHSCC---SSHHHHHHHHHHHHHTTCGGGCHHHHHHH
T ss_pred CCCCCCCCccccccccccC-CCchhhHHHHHHHHHHHHHHHHHHHhcc---cCHHHHHHHHHHHHHcCchhhhHHHHHHH
Confidence 7999999999999999999 7677788899999999999999997632 68999999999999999999999999999
Q ss_pred HHHHHhhcCCCccccccccccCChHHHHHHHHHHHhcCcccccccccccccccccccccccccccccccchHHHHHHHHh
Q 006994 139 LSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGILALYEA 218 (622)
Q Consensus 139 L~~i~~~~~~~~~~~~r~~~~~dl~~tal~FRLLR~hGy~vS~~d~~~~~~vf~~F~d~~G~F~~~l~~dv~glL~LyeA 218 (622)
|++||+. ... ...||++|||+|||||||||+||| | ||++|+|++|+|++++.+||+|||+||||
T Consensus 97 L~~i~~~-~~~--------~~~dl~~~al~FRlLR~hGy~VS~-d------vf~~F~~~~g~F~~~l~~d~~glL~LYeA 160 (554)
T 3g4d_A 97 LENIYHN-NND--------AENDLYTTSIRFRLLREHGYNVSC-D------VFNKFKDEQGNFKSSVTSDVRGLLELYQA 160 (554)
T ss_dssp HHHHHHS-CCC--------TTCCHHHHHHHHHHHHHTTCCCCG-G------GGGGGBCTTSSBCHHHHHCHHHHHHHHHH
T ss_pred HHHHHhc-cCC--------CCCCHHHHHHHHHHHHhcCCCCCh-h------HHhhhcccCCCcccccccchHHHHHHHHH
Confidence 9999985 111 137999999999999999999999 9 99999999999999999999999999999
Q ss_pred hhhcCcccHHHHHHHHHHhHHHHHHHHhcCCCCCCCcHHHHHHHHccCCcccccchHHHHHHHHHhcCCCCCcHHHHHHH
Q 006994 219 AYLLVEEESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELA 298 (622)
Q Consensus 219 s~l~~~gE~~iLdeA~~Ft~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~Rlear~yI~~Y~~~~~~n~~lLelA 298 (622)
|||++||| +|||||+.||++||++.+.+ ++++|+++|+|||++|||+++||||||+||++|++++++|++|||||
T Consensus 161 s~l~~~gE-~iLdeA~~fs~~~L~~~~~~----~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelA 235 (554)
T 3g4d_A 161 SYLRVHGE-DILDEAISFTTHHLSLAVAS----LDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFA 235 (554)
T ss_dssp HTTCCTTC-HHHHHHHHHHHHHHHHHSTT----CCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSSTTCCHHHHHHH
T ss_pred HhCCCCCc-HHHHHHHHHHHHHHHHHHhc----cCchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcCccccHHHHHHH
Confidence 99999999 99999999999999998876 78889999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHhHHHHHHHHHHHhhcCCCC-cchhhhhhhHhHHHHhccccCCCccchhhhhhhchhhhhhhhcccccCCC
Q 006994 299 KLDFNAVQAEHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGT 377 (622)
Q Consensus 299 klDFn~~Q~~hq~El~~lsrWwk~l~l~~-l~faRdRlve~Yfwa~a~~fEP~~s~~Ri~laK~~~li~iiDD~fD~ygt 377 (622)
|||||+||++||+||++++||||++||.+ |||||||++|||||++|++|||+||.+|++|||+++|++++||+||+|||
T Consensus 236 kldFn~~Q~~hq~El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT 315 (554)
T 3g4d_A 236 KIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYAT 315 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 99999999999999999999999999977 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCccccccCChhhHHHHHHHhhhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 006994 378 LDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIP 457 (622)
Q Consensus 378 ~eEl~~ft~ai~rWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vP 457 (622)
+|||+.||+||+|||++++++||+|||+||.+|+++++|++.++.+.+|.++++|++++|+++++||++||+|+++||+|
T Consensus 316 leEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvP 395 (554)
T 3g4d_A 316 YEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKP 395 (554)
T ss_dssp HHHHHHHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999888888999999999999999999999999999999
Q ss_pred CHHhhhhhccccchHHHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCcccchhhhhcCCCccchhhhhhc
Q 006994 458 TLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHE 537 (622)
Q Consensus 458 tleEYl~~~~~SsG~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rGd~~n~V~cyMkE 537 (622)
|+||||+||++|+|+++++++++++||+.+|+++++|+.++|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|
T Consensus 396 T~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke 475 (554)
T 3g4d_A 396 SFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEE 475 (554)
T ss_dssp CHHHHHHHHGGGSCHHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHH
T ss_pred CHHHHHhccceeehHHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccHHHHHHHHHHhhhhccccccCCCCCCchh-HHHHhhhhcccc
Q 006994 538 TGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHK-SKNRVLPLLVHP 616 (622)
Q Consensus 538 ~g~S~EeA~~~i~~mie~~wK~ln~e~l~~~~~~~~~p~~~~~~~lN~aR~~~~~Y~~~D~~t~~~~-~k~~I~~ll~ep 616 (622)
+|+|+|+|+++++++|+++||+||++++++++ +|++|+++++|+||+++++|+++||||.|+. ||++|++||++|
T Consensus 476 ~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~----~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~P 551 (554)
T 3g4d_A 476 YGVTAQEAYDVFNKHVESAWKDLNQEFLKPTE----MPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEP 551 (554)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHHHHHSSSCS----SCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999877 9999999999999999999999999999865 999999999999
Q ss_pred ccc
Q 006994 617 VSL 619 (622)
Q Consensus 617 i~~ 619 (622)
||+
T Consensus 552 i~l 554 (554)
T 3g4d_A 552 IAL 554 (554)
T ss_dssp CCC
T ss_pred CCC
Confidence 986
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=1e-165 Score=1376.75 Aligned_cols=535 Identities=48% Similarity=0.854 Sum_probs=506.0
Q ss_pred cCCCCCCCCCCCCcCccccCCchhhhhHHHHHHHHHHHHHHHHhhccccccc-ChhhhHHHHHHHHHhCCccccHHHHHH
Q 006994 59 NRRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYV-DALHQLEIVDNLQRLGVSYHFEDEIKR 137 (622)
Q Consensus 59 ~r~~~~~~ps~w~~~fl~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~~~-~~~~~L~lID~lqRLGi~~hF~~EI~~ 137 (622)
.|+++|||||+|||+||+++++++..+.+.+++++||++||+||.+. . +++++|+|||+||||||+|||++||++
T Consensus 14 ~~~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~e~Lk~eVr~~l~~~----~~~~~~~L~lID~lqRLGi~~hF~~EI~~ 89 (555)
T 3n0f_A 14 ARRSADYEPNSWDYDFLLSSDTDESIEVYKDKAKKLEAEVRREINNE----KAEFLTLLELIDNVQRLGLGYRFESDIRR 89 (555)
T ss_dssp ---CCCCCCCTTCHHHHTCC-----CHHHHHHHHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHTTCGGGSHHHHHH
T ss_pred cCCCCCCCcccccccccccCCcchhhHHHHHHHHHHHHHHHHHHHhc----ccCHHHHHHHHHHHHHcCchhhhHHHHHH
Confidence 79999999999999999998877778889999999999999999765 6 899999999999999999999999999
Q ss_pred HHHHHHhhcCCCccccccccccCChHHHHHHHHHHHhcCcccccccccccccccccccccccccccccccchHHHHHHHH
Q 006994 138 FLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGILALYE 217 (622)
Q Consensus 138 ~L~~i~~~~~~~~~~~~r~~~~~dl~~tal~FRLLR~hGy~vS~~d~~~~~~vf~~F~d~~G~F~~~l~~dv~glL~Lye 217 (622)
+|++||+. ..+++|+ ..||++|||+|||||||||+||| | ||++|+|++|+|++++.+||+|||||||
T Consensus 90 ~L~~i~~~--~~~~~~~----~~DL~~~Al~FRLLR~hGy~VS~-d------vF~~F~d~~G~F~~~l~~dv~glL~LYe 156 (555)
T 3n0f_A 90 ALDRFVSS--GGFDGVT----KTSLHATALSFRLLRQHGFEVSQ-E------AFSGFKDQNGNFLENLKEDTKAILSLYE 156 (555)
T ss_dssp HHHHHHHT--CHHHHHT----TTCHHHHHHHHHHHHHTTCCCCG-G------GGGGGBCTTSCBCGGGGGCHHHHHHHHH
T ss_pred HHHHHHhh--ccccccc----cCCHHHHHHHHHHHHhcCCCcCh-H------HHhcccccCccchhhhhhhhHHHHHHHH
Confidence 99999974 2234444 27999999999999999999999 9 9999999999999999999999999999
Q ss_pred hhhhcCcccHHHHHHHHHHhHHHHHHHHhcCCCCCCCcHHHHHHHHccCCcccccchHHHHHHHHHhcCCCCCcHHHHHH
Q 006994 218 AAYLLVEEESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVEL 297 (622)
Q Consensus 218 As~l~~~gE~~iLdeA~~Ft~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~Rlear~yI~~Y~~~~~~n~~lLel 297 (622)
||||++||| +|||||++||++||++.+..+ ++++|+++|+|||++|||+++||||||+||++|++++++|++||||
T Consensus 157 As~l~~~gE-~iLdeA~~Fs~~~L~~~~~~~---~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLel 232 (555)
T 3n0f_A 157 ASFLALEGE-NILDEARVFAISHLKELSEEK---IGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLEL 232 (555)
T ss_dssp HHTTCCTTC-HHHHHHHHHHHHHHHTCCHHH---HCHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHTTCTTCCHHHHHH
T ss_pred HHhcccCCc-HHHHHHHHHHHHHHHHHHhcc---CCchHHHHHHHHhcCCcccCchHHHHHHHHHHhcccccccHHHHHH
Confidence 999999999 999999999999999876531 5788999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHhHHHHHHHHHHHhhcCCCC-cchhhhhhhHhHHHHhccccCCCccchhhhhhhchhhhhhhhcccccCC
Q 006994 298 AKLDFNAVQAEHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYG 376 (622)
Q Consensus 298 AklDFn~~Q~~hq~El~~lsrWwk~l~l~~-l~faRdRlve~Yfwa~a~~fEP~~s~~Ri~laK~~~li~iiDD~fD~yg 376 (622)
||||||+||++||+||++++||||++||.+ |||||||++|||||++|++|||+||.+|++|||+++|++++||+||+||
T Consensus 233 AKlDFN~~Q~~hq~EL~~lsrWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yg 312 (555)
T 3n0f_A 233 AILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYG 312 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhHHHHHHHhHHHHHHHHHHHHHcCCcccCCchhhHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHhccccC
Confidence 999999999999999999999999999976 9999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcCccccccCChhhHHHHHHHhhhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 006994 377 TLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYI 456 (622)
Q Consensus 377 t~eEl~~ft~ai~rWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~v 456 (622)
|+||++.||+||+|||++++++||+|||+||.+|+++++|++.++.+++|+++++|++++|+++++||++||+|+++||+
T Consensus 313 t~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~~w~~l~~ayl~EAkW~~~gyv 392 (555)
T 3n0f_A 313 TLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKST 392 (555)
T ss_dssp CHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHhhhhhccccchHHHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCcccchhhhhcCCCccchhhhhh
Q 006994 457 PTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMH 536 (622)
Q Consensus 457 PtleEYl~~~~~SsG~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rGd~~n~V~cyMk 536 (622)
||+||||+||++|+|+++++++++++||+.+|+++++|+.++|+|++++++|+||+|||+||++|+++|+++|+|+|||+
T Consensus 393 PT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~vas~V~cYMk 472 (555)
T 3n0f_A 393 PTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMR 472 (555)
T ss_dssp CCHHHHHHHHHHHTSHHHHHHHHHHHHCSSCCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHH
T ss_pred CCHHHHHHhcccchhHHHHHHHHHHhcCCCCCHHHHHhcccchHHHHHHHHHHHHhccchhhhhhhhcCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccHHHHHHHHHHhhhhccccccCCCCCCchh-HHHHhhhhccc
Q 006994 537 ETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHK-SKNRVLPLLVH 615 (622)
Q Consensus 537 E~g~S~EeA~~~i~~mie~~wK~ln~e~l~~~~~~~~~p~~~~~~~lN~aR~~~~~Y~~~D~~t~~~~-~k~~I~~ll~e 615 (622)
|+|+|+|+|+++++++|+++||+||++++++++ +|++|+++++|+||+++++|+++||||.|+. ||++|++||++
T Consensus 473 e~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~----~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~ 548 (555)
T 3n0f_A 473 TKGISEELATESVMNLIDETWKKMNKEKLGGSL----FAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVLSVITE 548 (555)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHHHHHHSCCS----SCHHHHHHHHHHHHHHHHHSCCC---CCHHHHHHHHHHHHTTS
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHhc
Confidence 999999999999999999999999999999877 9999999999999999999999999999875 99999999999
Q ss_pred ccc
Q 006994 616 PVS 618 (622)
Q Consensus 616 pi~ 618 (622)
|||
T Consensus 549 Pi~ 551 (555)
T 3n0f_A 549 PIL 551 (555)
T ss_dssp CCC
T ss_pred CCC
Confidence 998
No 4
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=8.5e-161 Score=1343.60 Aligned_cols=540 Identities=45% Similarity=0.843 Sum_probs=522.7
Q ss_pred cCCCCCCCCCCCCcCccccCCchhhhhHHHHHHHHHHHHHHHHhhcccccccChhhhHHHHHHHHHhCCccccHHHHHHH
Q 006994 59 NRRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIVDNLQRLGVSYHFEDEIKRF 138 (622)
Q Consensus 59 ~r~~~~~~ps~w~~~fl~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~~~~~~~~L~lID~lqRLGi~~hF~~EI~~~ 138 (622)
.||++|||||+|||+||+|+++++..+.+.+++++||++||+|+.+. .|++++|+|||+||||||+|||++||+++
T Consensus 1 ~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~Lk~~V~~~~~~~----~d~~~~l~liD~lqrLGi~~hF~~EI~~~ 76 (543)
T 2ong_A 1 MRRSGNYNPSRWDVNFIQSLLSDYKEDKHVIRASELVTLVKMELEKE----TDQIRQLELIDDLQRMGLSDHFQNEFKEI 76 (543)
T ss_dssp CCCCCCCCCCSSCHHHHHHCCCSSCSTHHHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHTTGGGTTHHHHHHH
T ss_pred CCCCCCCCCCcCCcccccCCCchhhhhHHHHHHHHHHHHHHHHHhcc----cCHHHHHHHHHHHHhCCchhhhHHHHHHH
Confidence 38899999999999999998777777789999999999999999887 68999999999999999999999999999
Q ss_pred HHHHHhhcCCCccccccccccCChHHHHHHHHHHHhcCcccccccccccccccccccccccccccccccchHHHHHHHHh
Q 006994 139 LSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGILALYEA 218 (622)
Q Consensus 139 L~~i~~~~~~~~~~~~r~~~~~dl~~tal~FRLLR~hGy~vS~~d~~~~~~vf~~F~d~~G~F~~~l~~dv~glL~LyeA 218 (622)
|++||+.|. .++|||+++ ..|||+|||+|||||||||+||| | ||++|||++|+|++++++||+||||||||
T Consensus 77 L~~i~~~~~-~~~~~~~~~-~~dl~~~al~FRlLR~hGy~vs~-d------vf~~Fk~~~g~F~~~l~~d~~glL~Ly~A 147 (543)
T 2ong_A 77 LSSIYLDHH-YYKNPFPKE-ERDLYSTSLAFRLLREHGFQVAQ-E------VFDSFKNEEGEFKESLSDDTRGLLQLYEA 147 (543)
T ss_dssp HHHHHHTTT-CCCSSCCCC-CCCHHHHHHHHHHHHHTTCCCCG-G------GGGGGBCTTSSBCTTGGGCHHHHHHHHHH
T ss_pred HHHHHHhhc-ccccccccc-cCCHHHHHHHHHHHHHcCCCccH-H------HHhcccCCCCCccchhhhccHHHHHHHHH
Confidence 999999884 578898887 77999999999999999999999 9 99999999999999999999999999999
Q ss_pred hhhcCcccHHHHHHHHHHhHHHHHHHHhcCCCCCCCcHHHHHHHHccCCcccccchHHHHHHHHHhcCCCCCcHHHHHHH
Q 006994 219 AYLLVEEESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELA 298 (622)
Q Consensus 219 s~l~~~gE~~iLdeA~~Ft~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~Rlear~yI~~Y~~~~~~n~~lLelA 298 (622)
|||++||| +|||||++||++||++.+.++ .++++|+++|+|||++|||+++||||||+||++|++++++|++|||||
T Consensus 148 s~l~~~gE-~iL~eA~~Ft~~~L~~~~~~~--~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelA 224 (543)
T 2ong_A 148 SFLLTEGE-TTLESAREFATKFLEEKVNEG--GVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELA 224 (543)
T ss_dssp HTTCCSSC-HHHHHHHHHHHHHHHHHHHSS--CSSSHHHHHHHHHHHSCTTTSCSTTTHHHHHHHHHTCSSCCHHHHHHH
T ss_pred HHcCCCCh-HHHHHHHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHhhhHhccchHHHHHHHHHHhccCccccHHHHHHH
Confidence 99999999 999999999999999998762 127899999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHhHHHHHHHHHHHhhcCCCC-cchhhhhhhHhHHHHhccccCCCccchhhhhhhchhhhhhhhcccccCCC
Q 006994 299 KLDFNAVQAEHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGT 377 (622)
Q Consensus 299 klDFn~~Q~~hq~El~~lsrWwk~l~l~~-l~faRdRlve~Yfwa~a~~fEP~~s~~Ri~laK~~~li~iiDD~fD~ygt 377 (622)
|||||+||++||+||++++|||+++||.+ +||+|||++|||||++|++|||++|.+|+++||+++|+|++||+||+|||
T Consensus 225 kldFn~~Q~~hq~El~~l~rWwk~~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~litviDD~fD~~gt 304 (543)
T 2ong_A 225 ILDLNIVQAQFQEELKESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGT 304 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSCSSCCCHHHHHHTHHHHTCSTTCHHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999988 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCccccccCChhhHHHHHHHhhhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 006994 378 LDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIP 457 (622)
Q Consensus 378 ~eEl~~ft~ai~rWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vP 457 (622)
++|++.||+||+|||++++++||+|||+||.+|++++++++.++.+.+|+++++|++++|++++++|++||+|+.+||+|
T Consensus 305 ~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vP 384 (543)
T 2ong_A 305 LEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKP 384 (543)
T ss_dssp HHHHHHHHHHHHTTCSSTTTTSCSHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHhhhhhccccchHHHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCcccchhhhhcCCCccchhhhhhc
Q 006994 458 TLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHE 537 (622)
Q Consensus 458 tleEYl~~~~~SsG~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rGd~~n~V~cyMkE 537 (622)
|+||||+||.+|+|+++++++++++||..+|+++++|+.++|++++++++|+||+|||+|+++|+++|+++|+|+|||+|
T Consensus 385 t~eEYl~~~~vS~g~~~l~~~~~~~~g~~~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~~~n~V~cyMke 464 (543)
T 2ong_A 385 SLEEYLENSWQSISGPCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSD 464 (543)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHSSCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHSSHHHHHTSCCCCHHHHHHHH
T ss_pred CHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhcccHHHHHHHHHHHHHhcccchhhhccccCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCcccccHHHHHHHHHHhhhhccccccCCCCCCchh-HHHHhhhhccc
Q 006994 538 TGASESDAREHIRDLITATWMKMNSKD-GDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHK-SKNRVLPLLVH 615 (622)
Q Consensus 538 ~g~S~EeA~~~i~~mie~~wK~ln~e~-l~~~~~~~~~p~~~~~~~lN~aR~~~~~Y~~~D~~t~~~~-~k~~I~~ll~e 615 (622)
+|+|+|+|+++++++|+++||+||+++ +++++ +|++|+++++|+||+++++|+++||||.|+. +|++|++||++
T Consensus 465 ~g~s~eeA~~~i~~~ie~~wk~ln~e~~l~~~~----vp~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~l~~~ 540 (543)
T 2ong_A 465 YNASEAEARKHVKWLIAEVWKKMNAERVSKDSP----FGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQQMTRTLFE 540 (543)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHTCSSCS----SCHHHHHHHHHHHHHHHHHTSSCSTTSSSCTTHHHHHHHHHTS
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhccCCCC----CCHHHHHHHHHHHHeehhheeCCCCCCCccHHHHHHHHHHhcc
Confidence 999999999999999999999999999 98877 9999999999999999999999999999965 99999999999
Q ss_pred ccc
Q 006994 616 PVS 618 (622)
Q Consensus 616 pi~ 618 (622)
|||
T Consensus 541 pi~ 543 (543)
T 2ong_A 541 PFA 543 (543)
T ss_dssp CC-
T ss_pred CCC
Confidence 997
No 5
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=2e-159 Score=1332.19 Aligned_cols=541 Identities=45% Similarity=0.815 Sum_probs=494.1
Q ss_pred cCCCCCCCCCCCCcCccccCCchhhhhHHHHHHHHHHHHHHHHhhcccccccChhhhHHHHHHHHHhCCccccHHHHHHH
Q 006994 59 NRRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIVDNLQRLGVSYHFEDEIKRF 138 (622)
Q Consensus 59 ~r~~~~~~ps~w~~~fl~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~~~~~~~~L~lID~lqRLGi~~hF~~EI~~~ 138 (622)
.||++|||||+|||+||+++++++..+.+.+++++||++||+|+.+. .|++++|+|||+||||||+|||++||+++
T Consensus 5 ~r~~~~~~ps~W~~~fl~s~~~~~~~~~~~~~~~~Lk~~V~~~~~~~----~d~~~~l~lvD~lqrLGi~~hF~~EI~~~ 80 (549)
T 1n1b_A 5 IRRSGNYQPALWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKEK----MEPVQQLELIHDLKYLGLSDFFQDEIKEI 80 (549)
T ss_dssp ----------CCCHHHHHHCCCSTTSHHHHHHHHHHHHHHHHHHHSC----CCHHHHHHHHHHHHHTTCGGGGHHHHHHH
T ss_pred CCCCCCCCCCCCCCCcccCCCcchhhhHHHHHHHHHHHHHHHHHhcc----cCHHHHHHhHHHHHhCCchhhhHHHHHHH
Confidence 79999999999999999877666777789999999999999999876 68999999999999999999999999999
Q ss_pred HHHHHhhcCCCccccccccccCChHHHHHHHHHHHhcCccccccccccccccccccccccc-ccccccccchHHHHHHHH
Q 006994 139 LSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQDVRVAVGTLSLFMDEKG-KLKSCLGDDIKGILALYE 217 (622)
Q Consensus 139 L~~i~~~~~~~~~~~~r~~~~~dl~~tal~FRLLR~hGy~vS~~d~~~~~~vf~~F~d~~G-~F~~~l~~dv~glL~Lye 217 (622)
|++||+.+. .+|++++...|||+|||+|||||||||+||| | ||++|||++| +|++++++||+|||||||
T Consensus 81 L~~i~~~~~---~~~~~~~~~~dl~~~al~FRlLR~hGy~Vs~-d------vf~~Fk~~~g~~F~~~l~~d~~glL~LY~ 150 (549)
T 1n1b_A 81 LGVIYNEHK---CFHNNEVEKMDLYFTALGFRLLRQHGFNISQ-D------VFNCFKNEKGIDFKASLAQDTKGMLQLYE 150 (549)
T ss_dssp HHHHHHHCH---HHHHCCCCSCCHHHHHHHHHHHHHTTCCCCG-G------GGGGGBCTTSSSBCGGGGGCHHHHHHHHH
T ss_pred HHHHHhhhc---cccccccccCChhhchhhhhHHHhcCCCcCH-H------HHhhccCCCCCccchhhhhccHHHHHHHH
Confidence 999998642 1222333357999999999999999999999 9 9999999999 999999999999999999
Q ss_pred hhhhcCcccHHHHHHHHHHhHHHHHHHHhcCCCCCCCcHHHHHHHHccCCcccccchHHHHHHHHHhcCCCCCcHHHHHH
Q 006994 218 AAYLLVEEESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVEL 297 (622)
Q Consensus 218 As~l~~~gE~~iLdeA~~Ft~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~Rlear~yI~~Y~~~~~~n~~lLel 297 (622)
||||++||| +|||||++||++||++.+.++++.++++|+++|+|||++|||+++||||||+||++|++++++|++||||
T Consensus 151 As~l~~~gE-~iL~eA~~Ft~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLel 229 (549)
T 1n1b_A 151 ASFLLRKGE-DTLELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFEL 229 (549)
T ss_dssp HHTTCCTTC-HHHHHHHHHHHHHHHHHTC------CHHHHHHHHHHHHSCGGGCCTTTSHHHHHHHHHHCTTCCHHHHHH
T ss_pred HHhcCCCCh-HHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHhcCchhcCchHHHHHHHHHHhcccccccHHHHHH
Confidence 999999999 9999999999999999987532223788999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHhHHHHHHHHHHHhhcCCCC-cchhhhhhhHhHHHHhccccCCCccchhhhhhhchhhhhhhhcccccCC
Q 006994 298 AKLDFNAVQAEHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYG 376 (622)
Q Consensus 298 AklDFn~~Q~~hq~El~~lsrWwk~l~l~~-l~faRdRlve~Yfwa~a~~fEP~~s~~Ri~laK~~~li~iiDD~fD~yg 376 (622)
||||||+||++||+||++++||||++||.+ |||+|||++|||||++|++|||++|.+|+++||+++|+|++||+||+||
T Consensus 230 AkldFn~~Q~~hq~El~~l~rWwke~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~l~tviDD~yD~~g 309 (549)
T 1n1b_A 230 AKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYG 309 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcCccccccCChhhHHHHHHHhhhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 006994 377 TLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYI 456 (622)
Q Consensus 377 t~eEl~~ft~ai~rWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~v 456 (622)
|+||++.||+||+|||++++++||+|||+||.+|++++++++.++.+.+|+++++|++++|++++++|++||+|+++||+
T Consensus 310 t~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~v 389 (549)
T 1n1b_A 310 TLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYT 389 (549)
T ss_dssp CHHHHHHHHHHHHHTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHhhhhhccccchHHHHHHHHHHHhCCCCChHH-HHhhhhhhhHHHHHHHHHHHhcCcccchhhhhcCCCccchhhhh
Q 006994 457 PTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEA-LQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYM 535 (622)
Q Consensus 457 PtleEYl~~~~~SsG~~~ll~~~~~~~G~~l~~e~-~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rGd~~n~V~cyM 535 (622)
||+||||++|.+|+|+++++++++++||..+|+++ ++|+.++|+++++++.|+||+|||+|+++|+++|+++|+|+|||
T Consensus 390 Pt~eEYl~~~~vS~g~~~l~~~~~~~~g~~lt~e~~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~v~n~V~cyM 469 (549)
T 1n1b_A 390 PSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYM 469 (549)
T ss_dssp CCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------CCCCHHHHHH
T ss_pred CCHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHHhhhcccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHH
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccHHHHHHHHHHhhhhccccccCCCCCCchh-HHHHhhhhcc
Q 006994 536 HETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHK-SKNRVLPLLV 614 (622)
Q Consensus 536 kE~g~S~EeA~~~i~~mie~~wK~ln~e~l~~~~~~~~~p~~~~~~~lN~aR~~~~~Y~~~D~~t~~~~-~k~~I~~ll~ 614 (622)
+|+|+|+|||+++++++|+++||+||++++++++ +|++|+++++|+||+++++|+++||||.|+. ||++|++||+
T Consensus 470 ke~g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~~----vp~~~~~~~~n~~R~~~~~Y~~~Dg~t~~~~~~k~~i~~l~~ 545 (549)
T 1n1b_A 470 KETNASEEEAVEHVKFLIREAWKDMNTAIAAGYP----FPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLF 545 (549)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCS----SCHHHHHHHHHHHHHHHHHTTTSCCC----CHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHeeehheeCCCCCCCCcHHHHHHHHHHhc
Confidence 9999999999999999999999999999999877 9999999999999999999999999999976 9999999999
Q ss_pred cccc
Q 006994 615 HPVS 618 (622)
Q Consensus 615 epi~ 618 (622)
+|||
T Consensus 546 ~pi~ 549 (549)
T 1n1b_A 546 EPYA 549 (549)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9997
No 6
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=1.3e-158 Score=1329.38 Aligned_cols=530 Identities=47% Similarity=0.816 Sum_probs=468.4
Q ss_pred cCCCCCCCCCCCCcCccccCCchhhhhHHHHHHHHHHHHHHHHhhcccccccChhhhHHHHHHHHHhCCccccHHHHHHH
Q 006994 59 NRRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIVDNLQRLGVSYHFEDEIKRF 138 (622)
Q Consensus 59 ~r~~~~~~ps~w~~~fl~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~~~~~~~~L~lID~lqRLGi~~hF~~EI~~~ 138 (622)
.||++|||||+|||+||+|+++++..+.+.+++++||++||+|+.+. .|++++|+|||+||||||+|||++||+++
T Consensus 34 ~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~Lk~~Vr~~~~~~----~d~~~~l~lID~lqrLGi~~hFe~EI~~~ 109 (569)
T 2j5c_A 34 WIRTGGYQPTLWDFSTIQSFDSEYKEEKHLMRAAGMIDQVKMMLQEE----VDSIRRLELIDDLRRLGISCHFEREIVEI 109 (569)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred cCCCCCCCCCcCCcccccCCCchhhhHHHHHHHHHHHHHHHHHHhcc----ccHHHHHHHHHHHHhCCchhhhHHHHHHH
Confidence 79999999999999999998777777789999999999999999887 68999999999999999999999999999
Q ss_pred HHHHH-hhcCCCccccccccccCChHHHHHHHHHHHhcCccccccccccccccccccccccc-ccccccccchHHHHHHH
Q 006994 139 LSRIY-NERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQDVRVAVGTLSLFMDEKG-KLKSCLGDDIKGILALY 216 (622)
Q Consensus 139 L~~i~-~~~~~~~~~~~r~~~~~dl~~tal~FRLLR~hGy~vS~~d~~~~~~vf~~F~d~~G-~F~~~l~~dv~glL~Ly 216 (622)
|++|| +.+.+ ...||++|||+|||||||||+||| | ||++|||++| +|++++++||+||||||
T Consensus 110 L~~i~~~~~~~---------~~~Dl~~~al~FRlLR~hGy~Vs~-d------vF~~Fkd~~G~~F~~~l~~dv~glL~LY 173 (569)
T 2j5c_A 110 LNSKYYTNNEI---------DERDLYSTALRFRLLRQYDFSVSQ-E------VFDCFKNAKGTDFKPSLVDDTRGLLQLY 173 (569)
T ss_dssp HHHHTTSSCCS---------CTTCHHHHHHHHHHHHHTTCCCCG-G------GGGGGBCSSSSSBCGGGGGCHHHHHHHH
T ss_pred HHHHHHhccCc---------ccCChhhhhHHhHHHHhcCCCcCH-H------HHhcccCCCCCccccchhhccHHHHHHH
Confidence 99999 75432 257999999999999999999999 9 9999999999 99999999999999999
Q ss_pred HhhhhcCcccHHHHHHHHHHhHHHHHHHHhcCCCCC-CCcHHHHHHHHccCCcccccchHHHHHHHHHhcCCCCCcHHHH
Q 006994 217 EAAYLLVEEESNIFNEAINFTTTHLKEYVKHNNNDD-DGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLV 295 (622)
Q Consensus 217 eAs~l~~~gE~~iLdeA~~Ft~~~L~~~~~~~~~~~-~~~l~~~V~~aL~~P~~~~~~Rlear~yI~~Y~~~~~~n~~lL 295 (622)
|||||++||| +|||||++||++||++++.+ + +++|+++|+|||++|||+++||||||+||++|++++++|++||
T Consensus 174 ~As~l~~~gE-~iLdeA~~Ft~~~L~~~~~~----~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lL 248 (569)
T 2j5c_A 174 EASFLSAQGE-ETLRLARDFATKFLQKRVLV----DKDINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVL 248 (569)
T ss_dssp HHHTTCCTTC-HHHHHHHHHHHHTTSSCC--------CHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHTTCTTCCHHHH
T ss_pred HHHhcCCCCh-HHHHHHHHHHHHHHHHHHhh----cCCCcHHHHHHHHhcCccccCcHHHHHHHHHHHhccCccccHHHH
Confidence 9999999999 99999999999999998765 5 7899999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHhHHHHHHHHHHHhhcCCCC-cchhhhhhhHhHHHHhccccCCCccchhhhhhhchhhhhhhhccccc
Q 006994 296 ELAKLDFNAVQAEHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDV 374 (622)
Q Consensus 296 elAklDFn~~Q~~hq~El~~lsrWwk~l~l~~-l~faRdRlve~Yfwa~a~~fEP~~s~~Ri~laK~~~li~iiDD~fD~ 374 (622)
||||||||+||++||+||++++|||+++||.+ +||+|||++|||||++|++|||++|.+|+++||+++|+|++||+||+
T Consensus 249 elAkldFn~~Q~~hq~EL~~l~rWwke~~L~~kl~faRdR~ve~Yfw~~a~~feP~~S~~Rl~~aK~~~litviDD~fD~ 328 (569)
T 2j5c_A 249 ELAKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDI 328 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC--CCCHHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999988 99999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhcCccccccCChhhHHHHHHHhhhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhhcC
Q 006994 375 YGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSG 454 (622)
Q Consensus 375 ygt~eEl~~ft~ai~rWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g 454 (622)
|||+||++.||+||+|||++++++||+|||+||.+|++++++++.++.+.+|+++++|++++|++++++|++||+|+.+|
T Consensus 329 ygT~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g 408 (569)
T 2j5c_A 329 YGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKG 408 (569)
T ss_dssp TCCHHHHHHHHHHHHHTSSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHhhhhhccccchHHHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCcccchhhhhcCCCccchhhh
Q 006994 455 YIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCY 534 (622)
Q Consensus 455 ~vPtleEYl~~~~~SsG~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rGd~~n~V~cy 534 (622)
|+||+||||+||.+|+|+++++++++++||..+|+++++|+.++|++++++++|+||+|||+|+++|+++|+++|+|+||
T Consensus 409 ~vPt~eEYl~~~~vSsg~~~l~~~~~~~~g~~lt~e~~e~l~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~s~V~cy 488 (569)
T 2j5c_A 409 HKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCY 488 (569)
T ss_dssp CCCCHHHHHHHHHHHTSCHHHHHHHHHHSCSSCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHC----------CCHHHHC
T ss_pred CCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhhccHHHHHHHHHHHHHhcccchhhhhcccCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccHHHHHHHHHHhhhhccccccC-CCCCCchh-HHHHhhhh
Q 006994 535 MHETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNG-DGHTIQHK-SKNRVLPL 612 (622)
Q Consensus 535 MkE~g~S~EeA~~~i~~mie~~wK~ln~e~l~~~~~~~~~p~~~~~~~lN~aR~~~~~Y~~~-D~~t~~~~-~k~~I~~l 612 (622)
|+|+|+|+|+|+++++++|+++||+||+++++ ++ +|++|+++++|+||+++++|+++ ||||.|+. +|++|++|
T Consensus 489 Mke~g~s~eeA~~~i~~~ie~~wk~ln~e~l~-~~----vp~~~~~~~~nlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~l 563 (569)
T 2j5c_A 489 MNEKNASEEEAREHVRSLIDQTWKMMNKEMMT-SS----FSKYFVEVSANLARMAQWIYQHESDGFGMQHSLVNKMLRDL 563 (569)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHH-CC----SCHHHHHHHHHHHHHHHHHTGGGSCTTC-CCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhc-cC----CCHHHHHHHHHHHheeehhccCCCcCCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999998 76 99999999999999999999999 99999965 99999999
Q ss_pred cccccc
Q 006994 613 LVHPVS 618 (622)
Q Consensus 613 l~epi~ 618 (622)
|++|||
T Consensus 564 l~~pi~ 569 (569)
T 2j5c_A 564 LFHRYE 569 (569)
T ss_dssp HTSCCC
T ss_pred hccCCC
Confidence 999997
No 7
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=3e-146 Score=1259.42 Aligned_cols=518 Identities=31% Similarity=0.515 Sum_probs=489.7
Q ss_pred HHHHHHHHHHHHHHhhccccccc-ChhhhHHHHHHHHHhCCccccHHHHHHHHHHHHhhcCCCccccccccccCChHHHH
Q 006994 88 AQRIEKLKGEVRLMLENKEVDYV-DALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVA 166 (622)
Q Consensus 88 ~~~~~~lk~~v~~~l~~~~~~~~-~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~r~~~~~dl~~ta 166 (622)
.++.+.|...|++.-++.|+.|+ |++++||+||+||||||+|||++||+++|++||+.|.++|+||||++...||++||
T Consensus 221 ~~~~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tA 300 (764)
T 3p5p_A 221 EKCFTFLNNLLDKFGGCVPCMYSIDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTA 300 (764)
T ss_dssp HHHHHHHHHHHHHHTSCCCSSCCCHHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTCCCSSTTCSSCCHHHHH
T ss_pred hhHHHHHHHHHHhcCCCCCCcCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHH
Confidence 46788999999998777888897 99999999999999999999999999999999999988899999988889999999
Q ss_pred HHHHHHHhcCcccccccccccccccccccccccccccc---cccchHHHHHHHHhhhhcCcccHHHHHHHHHHhHHHHHH
Q 006994 167 LEFRLLRQHGFDMHAQDVRVAVGTLSLFMDEKGKLKSC---LGDDIKGILALYEAAYLLVEEESNIFNEAINFTTTHLKE 243 (622)
Q Consensus 167 l~FRLLR~hGy~vS~~d~~~~~~vf~~F~d~~G~F~~~---l~~dv~glL~LyeAs~l~~~gE~~iLdeA~~Ft~~~L~~ 243 (622)
|+|||||||||+||| | ||++|+|++|+|+++ +.+||+|||||||||||+|||| +|||||++||++||++
T Consensus 301 l~FRlLR~~Gy~VS~-d------vf~~F~d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE-~iLdeA~~Fs~~~L~~ 372 (764)
T 3p5p_A 301 LGLRTLRMHGYNVSS-D------VLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDE-RAMDDARKFAEPYLRE 372 (764)
T ss_dssp HHHHHHHHTTCCCCG-G------GGGGGBCTTSCBCSCTTCSCCCHHHHHHHHHHHTTCCTTC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCccH-h------HHHhhhcCCCCccccccccccccHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHHHHH
Confidence 999999999999999 9 999999999999874 5899999999999999999999 9999999999999999
Q ss_pred HHhcCCCCCCCcHHHHHHHHccCCcccccchHHHHHHHHHhcCCCC------------CcHHHHHHHHhhhHHHHHHhHH
Q 006994 244 YVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPD------------VNQVLVELAKLDFNAVQAEHQE 311 (622)
Q Consensus 244 ~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~Rlear~yI~~Y~~~~~------------~n~~lLelAklDFn~~Q~~hq~ 311 (622)
.+.++ +.++++|+++|+|||++|||+++||||||+||++|++++. +|++||||||||||+||++||+
T Consensus 373 ~~~~~-~~~~~~L~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~ 451 (764)
T 3p5p_A 373 ALATK-ISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQE 451 (764)
T ss_dssp HHHHT-SCSSSHHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcc-CCCCccHHHHHHHHhcCchhccchHHHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHhHH
Confidence 88641 2367899999999999999999999999999999998765 4999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcchhhhhhhHhHHHHhccccCCCccchhhhhhhchhhhhhhhcccccCCCHHHHHHHHHHHhhc
Q 006994 312 ELKYVSRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERW 391 (622)
Q Consensus 312 El~~lsrWwk~l~l~~l~faRdRlve~Yfwa~a~~fEP~~s~~Ri~laK~~~li~iiDD~fD~ygt~eEl~~ft~ai~rW 391 (622)
||++++||||++||.+|||||||++|||||++| |||+||.+|++|||+++|++++||+||+|||+||++.||+||+||
T Consensus 452 EL~~l~rWwk~~~l~~l~faRdr~ve~Yfw~~~--feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RW 529 (764)
T 3p5p_A 452 ELKLLTRWWKESGMADINFTRHRVAEVYFSSAT--FEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRW 529 (764)
T ss_dssp HHHHHHHHHHHTSTTTTTCCHHHHHHHHHHTCC--CCGGGHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HhhhhceeHHhcCCCcCccHHHHHHHHHHHHHh--CCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHc
Confidence 999999999999997799999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CccccccCChhhHHHHHHHhhhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccch
Q 006994 392 DVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVS 471 (622)
Q Consensus 392 D~~~~~~LPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG 471 (622)
|++++++||+|||+||.+|+++++|++.++.+++|+++++|++++|++++++|++||+|+++||+||+||||+||++|+|
T Consensus 530 D~~~~~~LPeymk~~f~aL~~~~~ei~~~~~~~~g~~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg 609 (764)
T 3p5p_A 530 DTSLLHEIPECMQTCFKVWFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVG 609 (764)
T ss_dssp SSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTC
T ss_pred CchhhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCcccchhhhhcCCCccchhhhhhcC-CCCHHHHHHHHH
Q 006994 472 GPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHET-GASESDAREHIR 550 (622)
Q Consensus 472 ~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rGd~~n~V~cyMkE~-g~S~EeA~~~i~ 550 (622)
++++++.+++++|+.+|+|+++|+..+|+|+++++.|+||+|||+||++|+++|+++|+|+|||||+ |+|+|+|+++++
T Consensus 610 ~~~l~~~~~~~~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~ 689 (764)
T 3p5p_A 610 LGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHIC 689 (764)
T ss_dssp HHHHHHHHHHTSSSCCCGGGHHHHSTTSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHSTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHhhhhhhHHHHHHHHHHHHhhhcccchHHHHhcCCcchHHHHHHHhcCCCCHHHHHHHHH
Confidence 9999899999999999999999976669999999999999999999999999999999999999999 799999999999
Q ss_pred HHHHHHHHHHHHhhcC-CCCCcccccHHHHHHHHHHhhhhccccccCCCCCCchh-HHHHhhhhcccccccC
Q 006994 551 DLITATWMKMNSKDGD-ENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHK-SKNRVLPLLVHPVSLI 620 (622)
Q Consensus 551 ~mie~~wK~ln~e~l~-~~~~~~~~p~~~~~~~lN~aR~~~~~Y~~~D~~t~~~~-~k~~I~~ll~epi~~~ 620 (622)
++|+++||+||+++++ +++ +|++|+++++|+||+++|+|+++||||.|+. ||++|++||++||++.
T Consensus 690 ~~Ie~~wKeln~e~l~~~~~----~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~~~ 757 (764)
T 3p5p_A 690 RVVDRALKEASFEYFKPSND----IPMGCKSFIFNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPIQVG 757 (764)
T ss_dssp HHHHHHHHHHHHHHHSCCSS----SCHHHHHHHHHTHHHHHHHSCC-------CCCHHHHHHHHHTCCCCC-
T ss_pred HHHHHHHHHHHHHHhhCCCC----CCHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhcCCccC
Confidence 9999999999999997 666 9999999999999999999999999999876 9999999999999974
No 8
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=2.1e-146 Score=1268.23 Aligned_cols=520 Identities=33% Similarity=0.564 Sum_probs=488.7
Q ss_pred HHHHHHHHHHHHHHhhccccccc-ChhhhHHHHHHHHHhCCccccHHHHHHHHHHHHhhcCCCccccccccccCChHHHH
Q 006994 88 AQRIEKLKGEVRLMLENKEVDYV-DALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVA 166 (622)
Q Consensus 88 ~~~~~~lk~~v~~~l~~~~~~~~-~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~r~~~~~dl~~ta 166 (622)
.++.+.|...|++.-++.|+.|+ |++++||+||+||||||+|||++||+++|++||+.|.++|+||||+....||++||
T Consensus 273 ~~~~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tA 352 (817)
T 3sdr_A 273 AKCLEFLNSVMIKFGNFVPCLYPVDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTA 352 (817)
T ss_dssp HHHHHHHHHHHHHHSSCCCSSSCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTCCCSSTTCSSCCHHHHH
T ss_pred hhHHHHHHHHHHhcCCCCCccCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHH
Confidence 47788999999998777888897 99999999999999999999999999999999999988899999998889999999
Q ss_pred HHHHHHHhcCccccccccccccccccccccccccccccc---ccchHHHHHHHHhhhhcCcccHHHHHHHHHHhHHHHHH
Q 006994 167 LEFRLLRQHGFDMHAQDVRVAVGTLSLFMDEKGKLKSCL---GDDIKGILALYEAAYLLVEEESNIFNEAINFTTTHLKE 243 (622)
Q Consensus 167 l~FRLLR~hGy~vS~~d~~~~~~vf~~F~d~~G~F~~~l---~~dv~glL~LyeAs~l~~~gE~~iLdeA~~Ft~~~L~~ 243 (622)
|+|||||||||+||| | ||++|+|++|+|++++ .+||+|||||||||||++||| +|||||+.||++||++
T Consensus 353 l~FRlLR~~Gy~VS~-d------vf~~F~d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE-~iLdeA~~Ft~~~L~~ 424 (817)
T 3sdr_A 353 LGFRLLRLHRYNVSP-A------IFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGE-NILDEAKSFATKYLRE 424 (817)
T ss_dssp HHHHHHHHTTCCCCG-G------GGGGGBCC--CBCCCSSCHHHHHHHHHHHHHHHTTCCTTC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccH-h------HHHHHhhcCCCceechhhhchhhHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHH
Confidence 999999999999999 9 9999999999999865 589999999999999999999 9999999999999999
Q ss_pred HHhcCC----CCCCCcHHHHHHHHccCCcccccchHHHHHHHHHhcCCCC------------CcHHHHHHHHhhhHHHHH
Q 006994 244 YVKHNN----NDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPD------------VNQVLVELAKLDFNAVQA 307 (622)
Q Consensus 244 ~~~~~~----~~~~~~l~~~V~~aL~~P~~~~~~Rlear~yI~~Y~~~~~------------~n~~lLelAklDFn~~Q~ 307 (622)
.+.+++ +.++++|+++|+|||++|||+++||||||+||++|++++. +|++||||||||||+||+
T Consensus 425 ~~~~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~ 504 (817)
T 3sdr_A 425 ALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQS 504 (817)
T ss_dssp HHTSGGGGSHHHHHTTHHHHHHHHHHCCSTTCCHHHHHHHHHTTCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHhccccccccccCCcHHHHHHHHhcCchhccChHHHHHHHHHHhCccchhhhhhcccccccccHHHHHHHHHHHHHHHH
Confidence 876421 1134789999999999999999999999999999998765 499999999999999999
Q ss_pred HhHHHHHHHHHHHhhcCCCCcchhhhhhhHhHHHHhccccCCCccchhhhhhhchhhhhhhhcccccCCCHHHHHHHHHH
Q 006994 308 EHQEELKYVSRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNA 387 (622)
Q Consensus 308 ~hq~El~~lsrWwk~l~l~~l~faRdRlve~Yfwa~a~~fEP~~s~~Ri~laK~~~li~iiDD~fD~ygt~eEl~~ft~a 387 (622)
+||+||++++||||++||.+|||||||++|||||++|++|||+||.+|++|||+++|++++||+||+|||+||++.||+|
T Consensus 505 ~hq~EL~~lsrWwk~~~l~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~a 584 (817)
T 3sdr_A 505 IHQEEMKNVTSWFRDSGLPLFTFARERPLEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEA 584 (817)
T ss_dssp HHHHHHHHHHHHHHHSSGGGCTTSCCCHHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HhhhhhhhhceeHHhcCCCcCccHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHH
Confidence 99999999999999999977999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCccccccCChhhHHHHHHHhhhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhcc
Q 006994 388 VERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAW 467 (622)
Q Consensus 388 i~rWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~ 467 (622)
|+|||++++++||+|||+||.+|+++++|++.++.+++|+++++|++++|++++++|++||+|+++||+||+||||+||+
T Consensus 585 i~RWD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~ 664 (817)
T 3sdr_A 585 VRRWDLSFTENLPDYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGI 664 (817)
T ss_dssp HHHTCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHcCchhhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHH-HHHHHHHHhCCCCChHHHHhhh--hhhhHHHHHHHHHHHhcCcccchhhhhcCCCccchhhhhhcC-CCCHH
Q 006994 468 ISVSGPV-ILLHAYTLIANPPTKEALQFLE--EYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHET-GASES 543 (622)
Q Consensus 468 ~SsG~~~-ll~~~~~~~G~~l~~e~~e~~~--~~p~l~~~~~~i~RL~NDI~S~kkE~~rGd~~n~V~cyMkE~-g~S~E 543 (622)
+|+|+++ +++++++++|+.+|+|+++|+. ++|+|+++++.|+||+|||+||++|+++|+++|+|+|||||+ |+|+|
T Consensus 665 vS~g~~~ll~~~~~~~~g~~lt~e~~e~~~~~s~p~l~~~~~~I~RL~NDi~S~k~E~~rG~~assV~cYMke~~gvS~E 744 (817)
T 3sdr_A 665 TSIGQRILLLSGVLIMDGQLLSQEALEKVDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEE 744 (817)
T ss_dssp HHTCHHHHHHHHHTTCTTCCCCHHHHHTTCCTTSCSHHHHHHHHHHHHHHHHSSCC------CCCHHHHHHHHSTTSCHH
T ss_pred ccccccHHHHHHHHHHcCCCCCHHHHhcccccchHHHHHHHHHHHHHhccchHHHHHHhcCCcchHHHHHHHhCCCCCHH
Confidence 9999998 7888888899999999999976 456999999999999999999999999999999999999999 79999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCcccccHHHHHHHHHHhhhhccccccCCCCCCchh-HHHHhhhhccccccc
Q 006994 544 DAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHK-SKNRVLPLLVHPVSL 619 (622)
Q Consensus 544 eA~~~i~~mie~~wK~ln~e~l~~~~~~~~~p~~~~~~~lN~aR~~~~~Y~~~D~~t~~~~-~k~~I~~ll~epi~~ 619 (622)
+|+++++++|+++||+||++++++++ +|++|+++++|+||+++|+|+++||||.|+. ||++|++||++|||+
T Consensus 745 eA~~~i~~~Ie~~wKeln~e~l~~~~----~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~l 817 (817)
T 3sdr_A 745 EALDHIYSILEPAVKELTREFLKPDD----VPFACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817 (817)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCS----SCHHHHHHHHHHHHHHHHHTCSCCSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999877 9999999999999999999999999999876 999999999999985
No 9
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=8.5e-146 Score=1258.69 Aligned_cols=518 Identities=31% Similarity=0.548 Sum_probs=492.6
Q ss_pred HHHHHHHHHHHHHHhhccccccc-ChhhhHHHHHHHHHhCCccccHHHHHHHHHHHHhhcCCCccccccccccCChHHHH
Q 006994 88 AQRIEKLKGEVRLMLENKEVDYV-DALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVA 166 (622)
Q Consensus 88 ~~~~~~lk~~v~~~l~~~~~~~~-~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~r~~~~~dl~~ta 166 (622)
.++.+.|...|++.-++.|+.|+ |++++||+||+||||||+|||++||+++|++||+.|.++|+|||++....||++||
T Consensus 245 ~~~~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tA 324 (785)
T 3s9v_A 245 KKCLDFLNFVLKKFGNHVPCHYPLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTA 324 (785)
T ss_dssp HHHHHHHHHHHHHHSSCCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCSSTTCSSCCHHHHH
T ss_pred hhHHHHHHHHHHhcCCCCCCcCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccccccCCCCCHHHHH
Confidence 46788999999998777888897 99999999999999999999999999999999999988899999988888999999
Q ss_pred HHHHHHHhcCccccccccccccccccccccccccccccc---ccchHHHHHHHHhhhhcCcccHHHHHHHHHHhHHHHHH
Q 006994 167 LEFRLLRQHGFDMHAQDVRVAVGTLSLFMDEKGKLKSCL---GDDIKGILALYEAAYLLVEEESNIFNEAINFTTTHLKE 243 (622)
Q Consensus 167 l~FRLLR~hGy~vS~~d~~~~~~vf~~F~d~~G~F~~~l---~~dv~glL~LyeAs~l~~~gE~~iLdeA~~Ft~~~L~~ 243 (622)
|+|||||||||+||| | ||++|+|++|+|++++ .+||+|||||||||||+|||| +|||||++||++||++
T Consensus 325 l~FRlLR~~Gy~VS~-d------vf~~F~d~~g~F~~~~~e~~~dv~g~L~LYeAS~l~~~gE-~iLdeA~~Ft~~~L~~ 396 (785)
T 3s9v_A 325 MGLRILRLHGYNVSS-D------VLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGE-TIMEEAKLCTERYLRN 396 (785)
T ss_dssp HHHHHHHHTTCCCCG-G------GGGGGBCTTSCBCSSTTCCCCCHHHHHHHHHHHTSCCTTC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCH-H------HHHHHHhcCCCeeeccccccccccccHHHHhHhhcCCCCc-HHHHHHHHHHHHHHHH
Confidence 999999999999999 9 9999999999999866 699999999999999999999 9999999999999999
Q ss_pred HHhcCC----CCCCCcHHHHHHHHccCCcccccchHHHHHHHHHhcCCCC------------CcHHHHHHHHhhhHHHHH
Q 006994 244 YVKHNN----NDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPD------------VNQVLVELAKLDFNAVQA 307 (622)
Q Consensus 244 ~~~~~~----~~~~~~l~~~V~~aL~~P~~~~~~Rlear~yI~~Y~~~~~------------~n~~lLelAklDFn~~Q~ 307 (622)
.+.++. +.++++|+++|+|||++|||+++||||||+||++|++++. +|++||||||||||+||+
T Consensus 397 ~~~~~~~~d~~~~~~~L~~eV~~aL~~P~~~~l~RleaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~ 476 (785)
T 3s9v_A 397 ALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQS 476 (785)
T ss_dssp HTTTCCTTCTTCSSSCHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHhccccccccccCCcHHHHHHHHhCCccccCchHHHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHH
Confidence 876532 3467889999999999999999999999999999998775 499999999999999999
Q ss_pred HhHHHHHHHHHHHhhcCCCCcchhhhhhhHhHHHHhccccCCCccchhhhhhhchhhhhhhhcccccCCCHHHHHHHHHH
Q 006994 308 EHQEELKYVSRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNA 387 (622)
Q Consensus 308 ~hq~El~~lsrWwk~l~l~~l~faRdRlve~Yfwa~a~~fEP~~s~~Ri~laK~~~li~iiDD~fD~ygt~eEl~~ft~a 387 (622)
+||+||++++||||++||.+|||||||++|||||++|++|||+||.+|++|||+++|++++||+||+|||+||++.||+|
T Consensus 477 ~hq~EL~~lsrWwk~~~l~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~a 556 (785)
T 3s9v_A 477 IHQTELQDLRRWWKSSGFTDLNFTRERVTEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTES 556 (785)
T ss_dssp HHHHHHHHHHHHHHHTTTTSCSSSCCCHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHcCCCcCccHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 99999999999999999977999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCccccccCChhhHHHHHHHhhhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhcc
Q 006994 388 VERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAW 467 (622)
Q Consensus 388 i~rWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~ 467 (622)
|+|||++++++||+|||+||.+|+++++|++.++.+++|+++++|++++|++++++|++||+|+++||+||+||||+||+
T Consensus 557 i~RWD~~~~~~Lpeymk~~f~aL~~~~nei~~~~~~~~g~~~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~ 636 (785)
T 3s9v_A 557 VKRWDLSLVDQMPQQMKICFVGFYNTFNDIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENAS 636 (785)
T ss_dssp HHHTSSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHcCchhhhcCChhHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCcccchhhhhcCCCccchhhhhhcC-CCCHHHHH
Q 006994 468 ISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHET-GASESDAR 546 (622)
Q Consensus 468 ~SsG~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rGd~~n~V~cyMkE~-g~S~EeA~ 546 (622)
+|+|+++++++++++||+.+|+|+++|+..+|+|+++++.|+||+|||+||++|+++|+++|+|+|||||+ |+|+|+|+
T Consensus 637 vS~g~~~l~~~~~~~~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~ 716 (785)
T 3s9v_A 637 VSIALGTVVLISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEAL 716 (785)
T ss_dssp HHTCHHHHHHHHTTCSSSCCCHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCTTSCHHHHH
T ss_pred ccchHHHHHHHHHHHcCCCCCHHHHhcccccHHHHHHHHHHHHHhcccchhhHHHhcCCcchHHHHHHHhCCCCCHHHHH
Confidence 99999999999999999999999999976669999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcccccHHHHHHHHHHhhhhccccccCCCCCCchh--HHHHhhhhcccccc
Q 006994 547 EHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHK--SKNRVLPLLVHPVS 618 (622)
Q Consensus 547 ~~i~~mie~~wK~ln~e~l~~~~~~~~~p~~~~~~~lN~aR~~~~~Y~~~D~~t~~~~--~k~~I~~ll~epi~ 618 (622)
++++++|+++||+||+++++++ +|++|+++++|+||+++|+|+++||||.|+. ||++|++||++||.
T Consensus 717 ~~i~~~Ie~~wKeln~e~l~~~-----~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~~k~~i~~ll~~Pi~ 785 (785)
T 3s9v_A 717 QHVYSVMENALEELNREFVNNK-----IPDIYKRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPVA 785 (785)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC-----CCHHHHHHHHHHHHHHHHHTCCCC----CHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHhcccCC
Confidence 9999999999999999999732 8999999999999999999999999999875 99999999999983
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=3.9e-113 Score=975.50 Aligned_cols=488 Identities=23% Similarity=0.324 Sum_probs=418.4
Q ss_pred CCCCCCCCCcCccccCCc-h--hhhhHHHHHHHHHHHHHHHHhhccccccc-ChhhhHHHHHHHHHhCCccccHHHHHHH
Q 006994 63 ANYQPSMWGYDYLQSLSN-E--YVVESYAQRIEKLKGEVRLMLENKEVDYV-DALHQLEIVDNLQRLGVSYHFEDEIKRF 138 (622)
Q Consensus 63 ~~~~ps~w~~~fl~~~~~-~--~~~~~~~~~~~~lk~~v~~~l~~~~~~~~-~~~~~L~lID~lqRLGi~~hF~~EI~~~ 138 (622)
.++++. +-.|+.|++. . .....-.++.+.|+..|+++.++.|+.|+ |++++||+||+||||||+|||++||+++
T Consensus 194 ~~~q~~--~GS~~~SPsaTAa~l~~~~d~~~l~YL~~~v~k~~g~VP~~yP~d~~e~L~lID~LqRLGIs~hFe~EI~~~ 271 (727)
T 3pya_A 194 LKLQSQ--DGSFLFSPSSTAFAFMQTRDSNCLEYLRNAVKRFNGGVPNVFPVDLFEHIWIVDRLQRLGISRYFEEEIKEC 271 (727)
T ss_dssp GGGCCT--TSSBTTBHHHHHHHHHHHCCHHHHHHHHHHHHHTTTCCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHHH
T ss_pred hcccCC--CCCcccCHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHH
Confidence 445553 4455555332 1 11122357889999999999888888897 9999999999999999999999999999
Q ss_pred HHHHHhhcCCCccccccccccCChHHHHHHHHHHHhcCcccccccccccccccccccccccccccc---cccchHHHHHH
Q 006994 139 LSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQDVRVAVGTLSLFMDEKGKLKSC---LGDDIKGILAL 215 (622)
Q Consensus 139 L~~i~~~~~~~~~~~~r~~~~~dl~~tal~FRLLR~hGy~vS~~d~~~~~~vf~~F~d~~G~F~~~---l~~dv~glL~L 215 (622)
|+++|+.|.++|+||+++....||++|||+|||||||||+||| | ||++|+ ++|+|++. ..+||+|||+|
T Consensus 272 L~~i~~~~~~~g~~~~~~~~~~DL~~tAL~FRLLRqhGy~VS~-D------vF~~Fk-~~G~F~~~~~e~~~Dv~glLsL 343 (727)
T 3pya_A 272 LDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVSA-D------VFKNFE-KEGEFFCFVGQSNQAVTGMFNL 343 (727)
T ss_dssp HHHHHHTCCTTCCCSSSSCSCCCHHHHHHHHHHHHHTTCCCCG-G------GGGGGE-ETTEECSSTTCCCCCHHHHHHH
T ss_pred HHHHHHHhhhcCcccccCCCCCCHHHHHHHHHHHHhCCCCCCH-H------HHHhcc-CCCcccccccccccccHHHHHH
Confidence 9999999988899999988888999999999999999999999 9 999999 78999843 36899999999
Q ss_pred HHhhhhcCcccHHHHHHHHHHhHHHHHHHHhcCC----CCCCCcHHHHHHHHccCCcccccchHHHHHHHHHhcCCCC--
Q 006994 216 YEAAYLLVEEESNIFNEAINFTTTHLKEYVKHNN----NDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPD-- 289 (622)
Q Consensus 216 yeAs~l~~~gE~~iLdeA~~Ft~~~L~~~~~~~~----~~~~~~l~~~V~~aL~~P~~~~~~Rlear~yI~~Y~~~~~-- 289 (622)
||||||++||| +|||||+.||++||++.+.++. |.++++|+++|+|||++|||+++||||||+||++|+++++
T Consensus 344 YeAS~l~~~gE-~iLdeA~~Ft~~~L~~~~~~~~~~dkw~~~~~L~~~V~~aL~~P~~~~l~RleaR~yI~~Y~~~~~~~ 422 (727)
T 3pya_A 344 YRASQLAFPRE-EILKNAKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVW 422 (727)
T ss_dssp HHHHTTCCTTC-HHHHHHHHHHHHHHHHHHHTTCCCCSSEECSCHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCGGGCEE
T ss_pred HHHHHcCCCch-HHHHHHHHHHHHHHHHHHhcCCcccccccCCcHHHHHHHHhcCcHhcCChHHHHHHHHHHhccCcchh
Confidence 99999999999 9999999999999999876432 2346889999999999999999999999999999997654
Q ss_pred -----------CcHHHHHHHHhhhHHHHHHhHHHHHHHHHHHhhcCCCCcchhhhhhhHhHHHHhccccCCCccchhhhh
Q 006994 290 -----------VNQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRRMS 358 (622)
Q Consensus 290 -----------~n~~lLelAklDFn~~Q~~hq~El~~lsrWwk~l~l~~l~faRdRlve~Yfwa~a~~fEP~~s~~Ri~l 358 (622)
+|++||||||||||+||++||+||++++||||++||.+|||||||+||||||++|++|||+||.+|++|
T Consensus 423 i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~ 502 (727)
T 3pya_A 423 IGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEENRLSEWGVRRSELLECYYLAAATIFESERSHERMVW 502 (727)
T ss_dssp ESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTCCHHHHHHHHHHHHTTSCCGGGHHHHHHH
T ss_pred hhhhhccccccccHHHHHHHHHhHHHHHHHhHHHHhhhheeHHhcCcccCCchhhHHHHHHHHHHhccCCchhHHHHHHH
Confidence 699999999999999999999999999999999999779999999999999999999999999999999
Q ss_pred hhchhhhhhhhcccccCCCHHHHHHHHHHHhhcCcc---------cccc---CChh--hHHHHHHHhhhHHHHHHHHHhh
Q 006994 359 TKANALITTIDDVYDVYGTLDELELFTNAVERWDVN---------AMDQ---LPYY--MKLCFLVLHNSTNEMAFDVLKK 424 (622)
Q Consensus 359 aK~~~li~iiDD~fD~ygt~eEl~~ft~ai~rWD~~---------~~~~---LPey--mk~~f~aL~~~~~ei~~~~~k~ 424 (622)
||++++++++||+||+|| |||+.||+||+|||.. +++. +|+| ||+||.+|+|++||++.++.++
T Consensus 503 aK~~~l~tviDD~yD~yG--eEl~~ft~av~rwd~~~~~~~~~~~~~~~~~~~p~~~~mk~~f~aL~~t~nei~~~~~k~ 580 (727)
T 3pya_A 503 AKSSVLVKAISSSFGESS--DSRRSFSDQFHEYIANARRSDHHFNDRNMRLDRPGSVQASRLAGVLIGTLNQMSFDLFMS 580 (727)
T ss_dssp HHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcch--HHHHHHHHHHHhcccccccccccccchhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999974 3333 3887 8999999999999999999999
Q ss_pred cCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHHHHHHHh-CCCCChHHHHhhhhhhhHHH
Q 006994 425 QGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLI-ANPPTKEALQFLEEYPNIIR 503 (622)
Q Consensus 425 ~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~~~~~~~-G~~l~~e~~e~~~~~p~l~~ 503 (622)
||+++++|++++|.++++++++|++ + +| |. +++..+.++ |..+++ ++.. +.|..|.+
T Consensus 581 qg~~v~~~l~~~W~~~l~s~~~Ea~-~--------~E---------Ae--llv~~I~l~sG~~l~e-~l~~-~ey~~L~~ 638 (727)
T 3pya_A 581 HGRDVNNLLYLSWGDWMEKWKLYGD-E--------GE---------GE--LMVKMIILMKNNDLTN-FFTH-THFVRLAE 638 (727)
T ss_dssp HCCCCHHHHHHHHHHHHHHHHHHSS-C--------CH---------HH--HHHHHHHHHSSSCGGG-GGSS-HHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHHhcc-c--------cc---------ee--eeeeeeecCCCcchHh-hccC-hhHHHHHH
Confidence 9999999999999999999999997 2 33 22 334444444 666777 5554 66677999
Q ss_pred HHHHHHHHhcCcccchhhhhcCCCccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccHHHHHHHH
Q 006994 504 WPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAI 583 (622)
Q Consensus 504 ~~~~i~RL~NDI~S~kkE~~rGd~~n~V~cyMkE~g~S~EeA~~~i~~mie~~wK~ln~e~l~~~~~~~~~p~~~~~~~l 583 (622)
+++.|+||+||+.+|++|+ .+++.+.|+..|++|++.++.+++ +.+|++|
T Consensus 639 ltn~icrllndl~~~~~E~-----------------------~~~~~~~IE~~mqEL~~lVl~~~~--~~ip~~~----- 688 (727)
T 3pya_A 639 IINRICLPRQYLKARRNDE-----------------------KEKTIKSMEKEMGKMVELALSESD--TFRDVSI----- 688 (727)
T ss_dssp HHHHHSCCCC------CHH-----------------------HHHHHHHHHHHHHHHHHHHHSCCT--TTHHHHH-----
T ss_pred HHHHHhHHHhHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHhccCC--CCCCCcc-----
Confidence 9999999999999999977 457899999999999999997652 2499999
Q ss_pred HHhhhhccccccCCCCCCchhHHHHhhhhcccccc
Q 006994 584 NLARMAQCTYQNGDGHTIQHKSKNRVLPLLVHPVS 618 (622)
Q Consensus 584 N~aR~~~~~Y~~~D~~t~~~~~k~~I~~ll~epi~ 618 (622)
|++++++.||.. |||+|+ |+.||.+||+|||-
T Consensus 689 tf~~V~ksFYy~--ay~~p~-i~~hI~kVl~~~~~ 720 (727)
T 3pya_A 689 TFLDVAKAFYYF--ALCGDH-LQTHISKVLFQKVG 720 (727)
T ss_dssp HHHHHHHHHHHH--HHHTTS-CHHHHHHHHHSCCC
T ss_pred cHHHHHHHHHhh--hcCCHH-HHHHHHHHHcCccc
Confidence 566666666764 999998 99999999999984
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=7.9e-50 Score=422.10 Aligned_cols=250 Identities=13% Similarity=0.082 Sum_probs=226.7
Q ss_pred HHhHHHHHHHH-HHHhhcCCCCcchhhhhhhHhHHHHhccccCCCccchhh-hhhhchhhhhhhhcccccC--CCHHHHH
Q 006994 307 AEHQEELKYVS-RWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRR-MSTKANALITTIDDVYDVY--GTLDELE 382 (622)
Q Consensus 307 ~~hq~El~~ls-rWwk~l~l~~l~faRdRlve~Yfwa~a~~fEP~~s~~Ri-~laK~~~li~iiDD~fD~y--gt~eEl~ 382 (622)
..|.+|++..+ +||+++|+.+.+|+|+|++++|||.++++|+|+++.+|+ ++||+++|+|++||+||.+ ||++|++
T Consensus 16 ~p~~~e~~~~~~~W~~~~~l~~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~~~ee~~ 95 (337)
T 1ps1_A 16 SPDHARAEAEQLAWPRSLGLIRSDAAAERHLRGGYADLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENPEDTK 95 (337)
T ss_dssp CTTHHHHHHSTTHHHHHTTSCCSHHHHHHHHTTCHHHHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCCCHHHHH
Confidence 34566776555 899999998889999999999999999999999999999 9999999999999999998 6999999
Q ss_pred HHHHHHhhcCccccccCChhhHHHHHHHhhhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCC-CHHh
Q 006994 383 LFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIP-TLEE 461 (622)
Q Consensus 383 ~ft~ai~rWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vP-tleE 461 (622)
.|++++.+|+.+ .+|+|+++++.++.+++++++.. .++....+++++|++|++++++||+|+.+|++| |++|
T Consensus 96 ~~~~~l~~~~~~---~~p~~~~~~~~~l~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eE 168 (337)
T 1ps1_A 96 QLTDQVAAALDG---PLPDTAPPIAHGFADIWRRTCEG----MTPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQ 168 (337)
T ss_dssp HHHHHHHGGGTS---CCCTTSCHHHHHHHHHHHHHHTT----SCHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHH
T ss_pred HHHHHHHHHcCC---CCCCCCChHHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHH
Confidence 999999999864 48999999999999999988754 345567899999999999999999999999999 9999
Q ss_pred hhhhccccchHHHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCcccchhhhhcCCCccchhhhhhcCCCC
Q 006994 462 YMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGAS 541 (622)
Q Consensus 462 Yl~~~~~SsG~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rGd~~n~V~cyMkE~g~S 541 (622)
||++|++|+|++++++++++++|..+|+++++. +.+++++++++.++||+|||+||++|+++|+++|+|.|||+++|+|
T Consensus 169 Yl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~~~n~V~~~m~~~g~s 247 (337)
T 1ps1_A 169 YLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDS-AVMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMILRREHGWS 247 (337)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSHHHHHHHHHCCC
T ss_pred HHHHcccccchhhHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcchHHHHHHHHcCCC
Confidence 999999999999999999999999999998776 5667899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 006994 542 ESDAREHIRDLITATWMKMNSKD 564 (622)
Q Consensus 542 ~EeA~~~i~~mie~~wK~ln~e~ 564 (622)
+|+|++++.++|+++||++|++.
T Consensus 248 ~eeA~~~v~~~i~~~~~~~~~~~ 270 (337)
T 1ps1_A 248 KSRSVSHMQNEVRARLEQYLLLE 270 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987
No 12
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=1.9e-48 Score=404.66 Aligned_cols=241 Identities=12% Similarity=0.035 Sum_probs=222.3
Q ss_pred hHHHHHHHH-HHHhhcCCCCcchhhhhhhHhHHHHhccccCCCccchhh-hhhhchhhhhhhhcccccCCCHHHHHHHHH
Q 006994 309 HQEELKYVS-RWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRR-MSTKANALITTIDDVYDVYGTLDELELFTN 386 (622)
Q Consensus 309 hq~El~~ls-rWwk~l~l~~l~faRdRlve~Yfwa~a~~fEP~~s~~Ri-~laK~~~li~iiDD~fD~ygt~eEl~~ft~ 386 (622)
|.+|++... +||+++|+.++||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. |+.+|++.|++
T Consensus 14 ~~~~~~~~~~~W~~~~~l~~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~-~~~~e~~~~~~ 92 (300)
T 1di1_A 14 RVKEVQDEVDGYFLENWKFPSFKAVRTFLDAKFSEVTCLYFPLALDDRIHFACRLLTVLFLIDDVLEH-MSFADGEAYNN 92 (300)
T ss_dssp THHHHHHHHHHHHHHHSCCSSHHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCcchhhhhcCCCCCHHHHHHHHHHHHHHHHHHhcccc-CCHHHHHHHHH
Confidence 566777665 777999998889999999999999999999999999999 999999999999999999 78999999999
Q ss_pred HHhhcCccccccCChhhHHHHHHHhhhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhc
Q 006994 387 AVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNA 466 (622)
Q Consensus 387 ai~rWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~ 466 (622)
++.||+.+ +.+|+||++++.++++++++++... + .+.++.|+.++++|+ |++|+..|++||++|||++|
T Consensus 93 ~~~~~~~~--~~lp~~~~~~~~~l~d~~~~~~~~~-~-------~~~~~~~~~~~~~~~-ea~~~~~~~~Ps~eeYl~~r 161 (300)
T 1di1_A 93 RLIPISRG--DVLPDRTKPEEFILYDLWESMRAHD-A-------ELANEVLEPTFVFMR-AQTDRARLSIHELGHYLEYR 161 (300)
T ss_dssp HHHHHHHT--SSCCCTTCHHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHHHHH-TTTCCCCCCCCSHHHHHHHH
T ss_pred HHHHHccC--CCCCCCccHHHHHHHHHHHHHHhhC-h-------HHHHHHHHHHHHHHH-HHhccccCCCCCHHHHHHHH
Confidence 99999875 4689999999999999999998765 2 356777999999997 89999999999999999999
Q ss_pred cccchHHHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCcccchhhhhcCC--------CccchhhhhhcC
Q 006994 467 WISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGD--------VPKAIQCYMHET 538 (622)
Q Consensus 467 ~~SsG~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rGd--------~~n~V~cyMkE~ 538 (622)
++|+|++++++++++++|..+|+++++ ..|+++++++.++||+|||+||++|+++|+ ++|+|.|||+++
T Consensus 162 ~~s~g~~~~~~~~~~~~g~~l~~e~~~---~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~n~V~~~m~~~ 238 (300)
T 1di1_A 162 EKDVGKALLSALMRFSMGLRLSADELQ---DMKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLCSAVKVLAEES 238 (300)
T ss_dssp HTCHHHHHHHHHHHHHHTCCCCHHHHH---TTHHHHHHHHHHHHHHHHHHHTTTTCCC----------CCCHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccchhHHHHHHHc
Confidence 999999999999999999999999998 369999999999999999999999999998 789999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhh
Q 006994 539 GASESDAREHIRDLITATWMKMNSKD 564 (622)
Q Consensus 539 g~S~EeA~~~i~~mie~~wK~ln~e~ 564 (622)
|+|+|+|+++++++|+++|+++|+..
T Consensus 239 g~s~eeA~~~~~~~i~~~~~~~~~~~ 264 (300)
T 1di1_A 239 KLGIPATKRVLWSMTREWETVHDEIV 264 (300)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999865
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=1.5e-46 Score=394.40 Aligned_cols=242 Identities=12% Similarity=0.044 Sum_probs=219.0
Q ss_pred HhHHHHHHHH-HHHhhcCCCCcchhhhhhhHhHHHHhccccCCCccchhh-hhhhchhhhhhhhcccccCCCHHHHHHHH
Q 006994 308 EHQEELKYVS-RWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRR-MSTKANALITTIDDVYDVYGTLDELELFT 385 (622)
Q Consensus 308 ~hq~El~~ls-rWwk~l~l~~l~faRdRlve~Yfwa~a~~fEP~~s~~Ri-~laK~~~li~iiDD~fD~ygt~eEl~~ft 385 (622)
.|.+|++..+ +||+++|+...||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. |+++|++.|+
T Consensus 27 p~~~e~~~~~~~W~~~~~l~~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~-~~~~e~~~~~ 105 (320)
T 3bny_A 27 PLVEEVSKEVDGYFLQHWNFPNEKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEY-MSFEEGSAYN 105 (320)
T ss_dssp TTHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTT-SCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCCCChHHHHHHHhcCchhhHhhhCCCCCHHHHHHHHHHHHHHHHhhccccc-CChhhHHHHH
Confidence 4566777666 777999998779999999999999999999999999999 999999999999999999 8899999999
Q ss_pred HHHhhcCccccccCChhhHHHHHHHhhhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhh
Q 006994 386 NAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDN 465 (622)
Q Consensus 386 ~ai~rWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~ 465 (622)
+++.+|+.+ +.+|+||++++.++++++++++... + .+.++.|+.++ ++++|++|+..|++||++|||++
T Consensus 106 ~~l~~~~~~--~~~p~~~~~~~~al~d~~~e~~~~~-~-------~~~~~~~~~~~-~~~~e~~~~~~~~~Ps~eeYl~~ 174 (320)
T 3bny_A 106 EKLIPISRG--DVLPDRSIPVEYIIYDLWESMRAHD-R-------EMADEILEPVF-LFMRAQTDRTRARPMGLGGYLEY 174 (320)
T ss_dssp HHHHHHHHT--SSCCCTTSHHHHHHHHHHHHHHHHH-H-------HHHHHTHHHHH-HHHHHTSCCCCCCCCCHHHHHHH
T ss_pred HHHHHHhcC--CCCCCCcCHHHHHHHHHHHHHHhhC-H-------HHHHHHHHHHH-HHHHHHhhhccCCCCCHHHHHHH
Confidence 999999865 4689999999999999999998664 2 25556677777 59999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCcccchhhhhcCC--------Cccchhhhhhc
Q 006994 466 AWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGD--------VPKAIQCYMHE 537 (622)
Q Consensus 466 ~~~SsG~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rGd--------~~n~V~cyMkE 537 (622)
|++|+|++++++++++++|..+|+++++ ..|+|+++++.++||+|||+||+||+++|+ ++|+|.|||++
T Consensus 175 r~~s~g~~~~~~~~~~~~g~~l~~e~~~---~~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~~~~~~~N~V~~~m~~ 251 (320)
T 3bny_A 175 RERDVGKELLAALMRFSMGLKLSPSELQ---RVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQILAQE 251 (320)
T ss_dssp HHTCHHHHHHHHHHHHHHTCCCCHHHHH---HTHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCSHHHHHHHH
T ss_pred hhhcccHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHHHHHHHHhcccchhHHHHHhhcccccccccccchHHHHHHH
Confidence 9999999999999999999999999988 479999999999999999999999999998 78999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 006994 538 TGASESDAREHIRDLITATWMKMNSKD 564 (622)
Q Consensus 538 ~g~S~EeA~~~i~~mie~~wK~ln~e~ 564 (622)
+|+|+|+|++++.+++++.|+++|+..
T Consensus 252 ~g~s~eeA~~~~~~~i~~~~~~~~~l~ 278 (320)
T 3bny_A 252 ADVTAEAAKRVLFVMCREWELRHQLLV 278 (320)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999865
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=2e-44 Score=388.37 Aligned_cols=243 Identities=9% Similarity=-0.002 Sum_probs=223.3
Q ss_pred HHHHHhhcCCCCcchhhhhhhHhHHHHhccccCCCccchhh-hhhhchhhhhhhhccccc--CC-CHHHHHHHHHHHhhc
Q 006994 316 VSRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRR-MSTKANALITTIDDVYDV--YG-TLDELELFTNAVERW 391 (622)
Q Consensus 316 lsrWwk~l~l~~l~faRdRlve~Yfwa~a~~fEP~~s~~Ri-~laK~~~li~iiDD~fD~--yg-t~eEl~~ft~ai~rW 391 (622)
+.+||+++|+..-+++|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. +| ++++++.|++++.++
T Consensus 66 ~~~W~~~~gl~~~~~~r~r~~~~~~~~laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~~~~~~~~l~~~ 145 (382)
T 3kb9_A 66 TRTWLLEKRLMPADKVEEYADGLCYTDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLHTA 145 (382)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHCHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHH
Confidence 56899999998777899999999999999999999999999 999999999999999996 66 999999999999985
Q ss_pred CccccccCChhhHHHHHHHhhhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccch
Q 006994 392 DVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVS 471 (622)
Q Consensus 392 D~~~~~~LPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG 471 (622)
- +....+|+++++++.++.+++++++.... +....+++++|++++++|++||+|+.+|++||++|||++|++|+|
T Consensus 146 l-~~~~~~p~~~~p~~~al~dl~~~~~~~~~----~~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g 220 (382)
T 3kb9_A 146 L-DSPGDHLHHEDTLVAGFADSVRRLYAFLP----ATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFA 220 (382)
T ss_dssp H-HSCGGGTTCSSHHHHHHHHHHHHHTTSSC----HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred h-cCCCCCCCCCChHHHHHHHHHHHHHccCC----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcC
Confidence 1 11223688999999999999998875432 234689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCcccchhhhhcCCCccchhhhhhcCCCCHHHHHHHHHH
Q 006994 472 GPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDAREHIRD 551 (622)
Q Consensus 472 ~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rGd~~n~V~cyMkE~g~S~EeA~~~i~~ 551 (622)
++++++++++++|..+|++++++ +..++|+++++.++||+|||+||+||+++|+++|+|.|||+++|+|+|+|++++++
T Consensus 221 ~~~~~~l~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~g~s~eeA~~~v~~ 299 (382)
T 3kb9_A 221 HWIWTDLLEPSSGCELPDAVRKH-PAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTLEEAIGEVRR 299 (382)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcCCCCHHHHHHHHHH
Confidence 99999999999999999999888 67888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 006994 552 LITATWMKMNSKD 564 (622)
Q Consensus 552 mie~~wK~ln~e~ 564 (622)
+|+++||++|+..
T Consensus 300 ~i~~~~k~~~~~~ 312 (382)
T 3kb9_A 300 RVEECITEFLAVE 312 (382)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999853
No 15
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=99.97 E-value=9.4e-31 Score=285.36 Aligned_cols=241 Identities=11% Similarity=0.038 Sum_probs=183.1
Q ss_pred HHHHHHhhcCCCC-cchhhhhhhHh-HHHHhccccCCCc-cchhh-hhhhchhhhhhhhcc-cccCC-CHHH-HHHHHH-
Q 006994 315 YVSRWWRKTGLGE-LHFARDRIMEN-FFWALGEVWEPQF-GYCRR-MSTKANALITTIDDV-YDVYG-TLDE-LELFTN- 386 (622)
Q Consensus 315 ~lsrWwk~l~l~~-l~faRdRlve~-Yfwa~a~~fEP~~-s~~Ri-~laK~~~li~iiDD~-fD~yg-t~eE-l~~ft~- 386 (622)
++..|.++.++.. -+ .|+++..+ |-+.+|.+| |.. +..|+ ..+++++|+|++||. +|..| +.+. ...+..
T Consensus 134 ~~~~W~~~~~~l~~~~-~~~~~~~~~~~llaa~~y-P~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~~~l~~a 211 (433)
T 3v1v_A 134 RIKRWAEDEVQLYPEE-WEGQFDGFSVGRYMVGCH-PDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPVGLGGRLLLA 211 (433)
T ss_dssp HHHHHHHHTSCCCC-----CCSCHHHHHHHHHHHC-TTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCTTHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHH-HHHHHHhcCHHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhHHHHHHH
Confidence 4568999876633 22 46666666 556666666 999 79998 999999999999999 49754 3332 122222
Q ss_pred --HHhhcCccccccCCh-----hhHHHHHHHhhhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Q 006994 387 --AVERWDVNAMDQLPY-----YMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTL 459 (622)
Q Consensus 387 --ai~rWD~~~~~~LPe-----ymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtl 459 (622)
++..... ..+.-|. .-..+..+++++++++.....+ ....+++++|++|+++|++||+|+..|++||+
T Consensus 212 ~~~~d~l~~-~~~g~p~~~~~~~~dp~~~al~d~~~~l~~~a~~----~q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsl 286 (433)
T 3v1v_A 212 HTAIDHFHS-TAEYTPTWQASLAADAPRRAYDSAMGYFVRAATP----SQSDRYRHDMARLHLGYLAEGAWAQTGHVPEV 286 (433)
T ss_dssp HTTTSCCCC-CTTTHHHHHHHTTSSHHHHHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCH
T ss_pred HHHHHhhhc-ccCCCCccccccCCchHHHHHHHHHHHHHhhcCH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCH
Confidence 2221110 0110010 0124578899999998765544 34689999999999999999999999999999
Q ss_pred HhhhhhccccchHHHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCcccchhhhhcC-CCccchhhhhhcC
Q 006994 460 EEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRG-DVPKAIQCYMHET 538 (622)
Q Consensus 460 eEYl~~~~~SsG~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rG-d~~n~V~cyMkE~ 538 (622)
||||++|++| |+.+++....+++|..+|++++++ +...+|+++++.++||+|||.||+||+++| +++|+|.|||+++
T Consensus 287 eEYl~~R~~s-g~~p~~~l~e~~~g~~lp~~v~~~-p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~~~N~V~~~mke~ 364 (433)
T 3v1v_A 287 WEYLAMRQFN-NFRPCPTITDTVGGYELPADLHAR-PDMQRVIALAGNATTIVNDLYSYTKELNSPGRHLNLPVVIAERE 364 (433)
T ss_dssp HHHHHHHHHS-SSTTTGGGHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHSHHHHTTSSSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHH-hHHHHHHHHHHHcCCCCCHHHHhC-chHHHHHHHHHHHHHHhchHHHHHHHHhcCCCCCcHHHHHHHhc
Confidence 9999999999 555554556777999999999887 567789999999999999999999999995 7889999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhh
Q 006994 539 GASESDAREHIRDLITATWMKMNSKD 564 (622)
Q Consensus 539 g~S~EeA~~~i~~mie~~wK~ln~e~ 564 (622)
|+|+|+|++++.+++++.++++.+..
T Consensus 365 g~S~eeA~~~v~~~i~~~~~~F~~~~ 390 (433)
T 3v1v_A 365 QLCERDAYLKAVEVHNELQHSFEAAA 390 (433)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887654
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=99.64 E-value=7.4e-16 Score=164.91 Aligned_cols=230 Identities=12% Similarity=0.018 Sum_probs=166.2
Q ss_pred HHHHHHHhhcC------------CCCcchhhhhhhHhHHHHhccccCCCccchhh-hhhhchhhhhhhhcccccCCCHHH
Q 006994 314 KYVSRWWRKTG------------LGELHFARDRIMENFFWALGEVWEPQFGYCRR-MSTKANALITTIDDVYDVYGTLDE 380 (622)
Q Consensus 314 ~~lsrWwk~l~------------l~~l~faRdRlve~Yfwa~a~~fEP~~s~~Ri-~laK~~~li~iiDD~fD~ygt~eE 380 (622)
.+..+|..+.| |..=+-..++.+.+=.|.++..| |..+...+ .++++.+|+|++||++|..+ ++
T Consensus 33 ~~~l~w~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~t~~~laar~Y-P~a~~e~l~liad~~~~~F~lDD~~d~~~--~~ 109 (374)
T 1yyq_A 33 IENLHYAYNKAAHHFAQPRQQQLLKVDPKRLQASLQTIVGMVVYSW-AKVSKECMADLSIHYTYTLVLDDSKDDPY--PT 109 (374)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHSCCCHHHHHHHHHHHHHHHHHHS-TTSCHHHHHHHHHHHHHHHHHTTCCSCSH--HH
T ss_pred HHHHHHHHHhccchhcccccccccccCHHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHHhhcccccCcH--HH
Confidence 34447887777 32112234555555556777777 99988887 89999999999999999654 66
Q ss_pred HHHHHHHHhhcCccccccCChhhHHHHHHHhhhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHH
Q 006994 381 LELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLE 460 (622)
Q Consensus 381 l~~ft~ai~rWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtle 460 (622)
+..|.+.+-+ ... |+ .++..++.+.+. ++....++....++.++|.+++.+++.|+.. .+..|+.+
T Consensus 110 l~~~~~~ll~--G~~----~~--~Pl~~al~dl~~----rl~~~~~p~~~~rf~~s~~~~~~a~~~Ea~n--~~~~p~~~ 175 (374)
T 1yyq_A 110 MVNYFDDLQA--GRE----QA--HPWWALVNEHFP----NVLRHFGPFCSLNLIRSTLDFFEGCWIEQYN--FGGFPGSH 175 (374)
T ss_dssp HTTHHHHHHH--TCC----CS--SHHHHHHHHHHH----HHHTTSCHHHHHHHHHHHHHHHHHHHHHTTC--CCCCTTCT
T ss_pred HHHHHHHHhc--CCC----CC--ChHHHHHHHHHH----HHHHhcCHHHHHHHHHHHHHHHHHHHHHHhc--cCCCCCHH
Confidence 7777776654 111 11 134455555554 4445556677889999999999999999873 67789999
Q ss_pred hhhhhccccchHHHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCcccchhhhhc-CCCccchhhhhhcCC
Q 006994 461 EYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKR-GDVPKAIQCYMHETG 539 (622)
Q Consensus 461 EYl~~~~~SsG~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~r-Gd~~n~V~cyMkE~g 539 (622)
+|...++.++|....... +..+..+.++.. ..+.+..++.....++.|+|||.||.||... |+.+|.|..++.++|
T Consensus 176 ~Y~~~rR~~sG~~E~~~~--~~~P~~~~~e~~-~~~~~~~~i~am~~~i~~~NDIlSf~KE~~~~Gd~~NlV~vl~~~~g 252 (374)
T 1yyq_A 176 DYPQFLRRMNGLGHCVGA--SLWPKEQFNERS-LFLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVKNYVVSDE 252 (374)
T ss_dssp THHHHHHHHHHCHHHHHH--TTCCTTTCCTTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHT
T ss_pred HHHHHHHhhccHHHHHHH--hhccccccchhh-cchhHHHHHHHHHHHHHhhhhhhccchhhhccCCccchhhhehhcCC
Confidence 999998998887543321 112222222211 1133445677777799999999999999984 999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHh
Q 006994 540 ASESDAREHIRDLITATWMKMNSK 563 (622)
Q Consensus 540 ~S~EeA~~~i~~mie~~wK~ln~e 563 (622)
+|.++|++++..++.....++-..
T Consensus 253 ~S~~eAl~~v~~~~~~~~~r~~~~ 276 (374)
T 1yyq_A 253 ISLHEALEKLTQDTLHSSKQMVAV 276 (374)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888653
No 17
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=97.77 E-value=6.2e-06 Score=96.06 Aligned_cols=94 Identities=24% Similarity=0.355 Sum_probs=56.1
Q ss_pred cCCCCCCCCCCCCcCccccCCchhhhhHHHHHHHHHHHHHHHHhh-cccc-----cccChhhhHHHHHHHHHhCCccccH
Q 006994 59 NRRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLE-NKEV-----DYVDALHQLEIVDNLQRLGVSYHFE 132 (622)
Q Consensus 59 ~r~~~~~~ps~w~~~fl~~~~~~~~~~~~~~~~~~lk~~v~~~l~-~~~~-----~~~~~~~~L~lID~lqRLGi~~hF~ 132 (622)
.||+|||+||+|+++||+|++++|..+.+.+++++|+++||+||. +... .-...++.=| |-.+..++ .+=.
T Consensus 24 ~Rrsany~Ps~W~~~~i~sl~~~~~~~~~~~~~~~Lie~VK~~l~~~~~~g~~g~~S~S~YDTAW-VAmvp~~~--~~~~ 100 (817)
T 3sdr_A 24 IRRTANPHPNVWGYDLVHSLKSPYIDSSYRERAEVLVSEIKAMLNPAITGDGESMITPSAYDTAW-VARVPAID--GSAR 100 (817)
T ss_dssp -----------CHHHHHHTCCCGGGSHHHHHHHHHHHHHHHHHHHHHHTSSCCCCCCCCHHHHHH-HHTCBCTT--SCSS
T ss_pred cCCCCCCCCCCCCCCeeeccCCcccchhHHHHHHHHHHHHHHHhccccCCCCCcccccCHHHhhH-HheeecCC--CCCC
Confidence 899999999999999999998888889999999999999999997 3210 0034566666 44444442 2212
Q ss_pred HHHHHHHHHHHhhcCCCccccccc
Q 006994 133 DEIKRFLSRIYNERNSRSSYHAKE 156 (622)
Q Consensus 133 ~EI~~~L~~i~~~~~~~~~~~~r~ 156 (622)
-.--++++.|-++...+| +||..
T Consensus 101 p~Fp~~~~wil~nQ~~DG-sWg~~ 123 (817)
T 3sdr_A 101 PQFPQTVDWILKNQLKDG-SWGIQ 123 (817)
T ss_dssp BSSHHHHHHHHHCCCTTS-CCSCT
T ss_pred CCchHHHHHHHHccCCCC-CCCCC
Confidence 222457888877655555 57743
No 18
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=80.65 E-value=28 Score=35.05 Aligned_cols=191 Identities=11% Similarity=0.111 Sum_probs=98.3
Q ss_pred hHHHHhccccCCCccchhhhhhhchhhhhhhhcccccCCCHHHHHHHHHHHhh-cCcccc--ccCChhhHHHHHHHhhhH
Q 006994 338 NFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVER-WDVNAM--DQLPYYMKLCFLVLHNST 414 (622)
Q Consensus 338 ~Yfwa~a~~fEP~~s~~Ri~laK~~~li~iiDD~fD~ygt~eEl~~ft~ai~r-WD~~~~--~~LPeymk~~f~aL~~~~ 414 (622)
+|++++-.. |. ..|-.+.-+-.|.-.+||+=|......+|+.+-+.+++ .+.... ..-|+ .++..+|.+++
T Consensus 27 sF~~a~~~L--p~--~~R~av~alYaf~R~~Ddi~D~~~~~~~L~~w~~~l~~~~~g~~~~~~~~~~--~pv~~al~~~~ 100 (293)
T 3acx_A 27 SFSYAFDLL--PE--DQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHFQSD--RRIMMALQHVA 100 (293)
T ss_dssp HHHHHHTTS--CH--HHHHHHHHHHHHHHHHHHGGGGTSSTHHHHHHHHHHHHHHHCTTSCCCCSSC--HHHHHHHHHHH
T ss_pred cHHHHHHhC--CH--HHHHHHHHHHHHHHHHhhHhccCCCHHHHHHHHHHHHHHhCCCCcccCCCCC--CHHHHHHHHHH
Confidence 455554433 33 45655555777777899999976544446666666554 111110 00022 35667776665
Q ss_pred HHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHHHHHHHhCCCCChHHHHh
Q 006994 415 NEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQF 494 (622)
Q Consensus 415 ~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~~~~~~~G~~l~~e~~e~ 494 (622)
.+. +. -++.+.+++.|+-. +......+|++|+......+.|.--.++.-.+ |..-.++..+.
T Consensus 101 ~~~--------~l-----~~~~~~~li~g~~~---Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~--g~~~~~~~~~~ 162 (293)
T 3acx_A 101 QHK--------NI-----AFQSFYNLIDTVYK---DQHFTMFETDAELFGYCYGVAGTVGEVLTPIL--SDHETHQTYDV 162 (293)
T ss_dssp HHS--------CC-----CHHHHHHHHHHHHH---HTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHH--CSSCCHHHHHH
T ss_pred HHh--------CC-----CHHHHHHHHHHHHH---HcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHh--CCCCcHHHHHH
Confidence 432 21 12445666667642 33344678999888888878776555444444 33211232222
Q ss_pred hhhhhhHHHHHHHHHHHhcCcccchhhhhcCC--CccchhhhhhcCCCCHHH---------HHHHHHHHHHHHHHHHHH
Q 006994 495 LEEYPNIIRWPSMIFRLANDLATSSDEVKRGD--VPKAIQCYMHETGASESD---------AREHIRDLITATWMKMNS 562 (622)
Q Consensus 495 ~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rGd--~~n~V~cyMkE~g~S~Ee---------A~~~i~~mie~~wK~ln~ 562 (622)
. ..+-.+..++. ++.|+. ....+|- .+.- -|.++|++.++ ..+-+..++..+..-+.+
T Consensus 163 A---~~lG~AlQltN-ilRDv~---eD~~~gR~YLP~d---~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~ 231 (293)
T 3acx_A 163 A---RRLGESLQLIN-ILRDVG---EDFENERIYFSKQ---RLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRD 231 (293)
T ss_dssp H---HHHHHHHHHHH-HHHCHH---HHHHTTCCCSCHH---HHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHH-HHHHHH---HHHhCCcEEeCHH---HHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1 12222222222 334443 2334553 2322 25678999776 234556666666655544
No 19
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=80.34 E-value=14 Score=38.81 Aligned_cols=87 Identities=11% Similarity=0.128 Sum_probs=59.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHHHHH-HHhCCCCChHHHHhhhhhhhHHHHHH
Q 006994 428 HIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAY-TLIANPPTKEALQFLEEYPNIIRWPS 506 (622)
Q Consensus 428 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~~~~-~~~G~~l~~e~~e~~~~~p~l~~~~~ 506 (622)
..+..+.+++..++.|-..+..|.... ||+++|++.-..-+|..+..+... ..++. .+++..+. .-.+-+..+
T Consensus 160 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a~~lga~lag-a~~~~~~~---l~~~g~~lG 233 (360)
T 3lmd_A 160 DTVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASAGYLGAMHAG-AAPEHIDA---LKNFGAAVG 233 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHHHHHHHHHTT-CCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHH
Confidence 456788889999999999999997554 999999987766666544322111 11222 45555443 356778888
Q ss_pred HHHHHhcCcccchh
Q 006994 507 MIFRLANDLATSSD 520 (622)
Q Consensus 507 ~i~RL~NDI~S~kk 520 (622)
+..-+.||+..+.-
T Consensus 234 ~aFQI~DDilD~~~ 247 (360)
T 3lmd_A 234 MIFQIVDDIIDIFS 247 (360)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHccC
Confidence 88889999877643
No 20
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=78.48 E-value=59 Score=32.75 Aligned_cols=106 Identities=14% Similarity=0.136 Sum_probs=57.5
Q ss_pred hhhhhhhchhhhhhhhcccccC-CC-HHHHHHHHHHHhhcCccccccCChhhHHHHHHHhhhHHHHHHHHHhhcCccchH
Q 006994 354 CRRMSTKANALITTIDDVYDVY-GT-LDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIP 431 (622)
Q Consensus 354 ~Ri~laK~~~li~iiDD~fD~y-gt-~eEl~~ft~ai~rWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~ 431 (622)
.|-.+.-+-.|.=.+||+-|.. +. ...|+.+-+.+.+- ...-|. .+++.+|.+++.+.. ..
T Consensus 40 ~R~~~~alYaf~R~~Ddi~D~~~~~~~~~L~~~~~~l~~~----~~g~~~--~pv~~al~~~~~~~~--------l~--- 102 (294)
T 4hd1_A 40 LRPHFYSVYAFCRGVDDLGDEFAGDRMAALDAYEEELRRA----FAGEAT--TPAFRALQFTIATCN--------LP--- 102 (294)
T ss_dssp THHHHHHHHHHHHHHHHTSTTCCSCHHHHHHHHHHHHHHH----HHTCCC--SHHHHHHHHHHHHHT--------CC---
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH----hcCCCC--CHHHHHHHHHHHHcC--------CC---
Confidence 3443444556677899999964 32 33455555555431 111122 256777776665431 11
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHHHHHH
Q 006994 432 YLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYT 481 (622)
Q Consensus 432 ~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~~~~~ 481 (622)
++.+.+++.++..... ....+|++|+......+.|..-.++...+
T Consensus 103 --~~~~~~li~g~~~Dl~---~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~ 147 (294)
T 4hd1_A 103 --MEPFLRLIEANRRDQR---KHTYDTWEDLRDYCRYSADPVGRLVLGIF 147 (294)
T ss_dssp --SHHHHHHHHHHHHHHH---CSBCCSHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHhccc---cCCCCCHHHHHHHHHhccchHHHHHHHHh
Confidence 2335566667654332 34568988887777777765444443333
No 21
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=72.98 E-value=28 Score=35.48 Aligned_cols=126 Identities=13% Similarity=0.124 Sum_probs=74.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHHHHHHH--hCCCCChHHHHhhhhhhhHHHHH
Q 006994 428 HIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTL--IANPPTKEALQFLEEYPNIIRWP 505 (622)
Q Consensus 428 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~ 505 (622)
.++..+.++...++.|-..+..|... .||.++|++.-..-+|.....+ +..| ++. .+++..+. .-.+-+..
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a-~~~ga~lag-~~~~~~~~---l~~~g~~l 199 (295)
T 3ipi_A 127 KVIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAIS-ASIGAYTGG-AEEELAER---FSHFGNAL 199 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHH-HHHHHHHTT-CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHcC-CCHHHHHH---HHHHHHHH
Confidence 45566777788889998888888643 4899999987666556543221 1211 222 35555443 35677888
Q ss_pred HHHHHHhcCcccchhhhh-----cCCCccchhhhhhcCCC--CHHHHHHHHHHHHHHHHHHHH
Q 006994 506 SMIFRLANDLATSSDEVK-----RGDVPKAIQCYMHETGA--SESDAREHIRDLITATWMKMN 561 (622)
Q Consensus 506 ~~i~RL~NDI~S~kkE~~-----rGd~~n~V~cyMkE~g~--S~EeA~~~i~~mie~~wK~ln 561 (622)
++..-+.||+..+..... .| ..+...+|..+.+- ..|.|++.+++.++++.+.+.
T Consensus 200 GlaFQI~DDilD~~~~~~gkd~~~g-k~Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~ 261 (295)
T 3ipi_A 200 GTAYQIVDDILEFLEVVEGKESKFT-SETLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLE 261 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------CCHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCccCCCcccC-cccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999887754332 22 23666677655421 156666667777777766554
No 22
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=64.09 E-value=79 Score=32.70 Aligned_cols=88 Identities=13% Similarity=0.089 Sum_probs=58.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHHH-HHHHhCCCCChHHHHhhhhhhhHHHHHH
Q 006994 428 HIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLH-AYTLIANPPTKEALQFLEEYPNIIRWPS 506 (622)
Q Consensus 428 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~~-~~~~~G~~l~~e~~e~~~~~p~l~~~~~ 506 (622)
.++..+.++...++.|-+.+..|.. +..||.++|++.-..-+|....++. .-..++. .+++..+. .-.+-+..+
T Consensus 139 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag-~~~~~~~~---l~~~g~~lG 213 (341)
T 3mzv_A 139 RVMEILANASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAATEVGGIIGG-APEDQVQA---LFDYGDALG 213 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT-CCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHH
Confidence 4567778888899999999999863 4568999999876665665432221 1111222 45554433 356778888
Q ss_pred HHHHHhcCcccchh
Q 006994 507 MIFRLANDLATSSD 520 (622)
Q Consensus 507 ~i~RL~NDI~S~kk 520 (622)
...-+.||+..+.-
T Consensus 214 ~aFQI~DD~ld~~~ 227 (341)
T 3mzv_A 214 IAFQIVDDLLDYGG 227 (341)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhccC
Confidence 88889999877643
No 23
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=62.73 E-value=60 Score=33.52 Aligned_cols=90 Identities=16% Similarity=0.123 Sum_probs=60.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHHHHH-HHhCCCCChHHHHhhhhhhhHHHHH
Q 006994 427 VHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAY-TLIANPPTKEALQFLEEYPNIIRWP 505 (622)
Q Consensus 427 ~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~~~~-~~~G~~l~~e~~e~~~~~p~l~~~~ 505 (622)
..++..+.++...++.|-..+..|.. ...||.++|++.-..-+|.....+... ..++. .+++..+. .-.+-...
T Consensus 132 ~~~~~~~~~~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag-~~~~~~~~---l~~~g~~l 206 (334)
T 3rmg_A 132 YEIIRLVSSLGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACAEAAALSVQ-VGEEEVAF---ARLLGEYI 206 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTT-CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHH
Confidence 34667788889999999999998863 345899999988776666543322111 11222 35554443 35678888
Q ss_pred HHHHHHhcCcccchhh
Q 006994 506 SMIFRLANDLATSSDE 521 (622)
Q Consensus 506 ~~i~RL~NDI~S~kkE 521 (622)
+...-+.||+..+..+
T Consensus 207 G~aFQi~DD~ld~~~~ 222 (334)
T 3rmg_A 207 GICFQIKDDIFDYFDS 222 (334)
T ss_dssp HHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHhccCCCh
Confidence 8889999999887643
No 24
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=62.46 E-value=85 Score=32.57 Aligned_cols=87 Identities=10% Similarity=-0.010 Sum_probs=59.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHHHHHHH--hCCCCChHHHHhhhhhhhHHHHH
Q 006994 428 HIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTL--IANPPTKEALQFLEEYPNIIRWP 505 (622)
Q Consensus 428 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~ 505 (622)
.++..+.++...++.|-+.+..|.. +..||.++|++.-..-+|..+..+ +..| ++. .+++..+. .-.+-+..
T Consensus 151 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~-~~~ga~lag-~~~~~~~~---l~~~g~~l 224 (345)
T 3oyr_A 151 KALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAA-SEAGAVSAG-VDVAKSEA---LRDYGLNL 224 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT-CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHcC-CCHHHHHH---HHHHHHHH
Confidence 4567788888899999999988853 445899999987776666543222 2221 222 45555443 35678888
Q ss_pred HHHHHHhcCcccchh
Q 006994 506 SMIFRLANDLATSSD 520 (622)
Q Consensus 506 ~~i~RL~NDI~S~kk 520 (622)
++..-+.||+..+.-
T Consensus 225 G~aFQi~DD~lD~~~ 239 (345)
T 3oyr_A 225 GLAFQLADDALDYGG 239 (345)
T ss_dssp HHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999988754
No 25
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=62.20 E-value=55 Score=33.06 Aligned_cols=121 Identities=10% Similarity=0.053 Sum_probs=78.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHH--HHHHHhCCCCChHHHHhhhhhhhHHHHH
Q 006994 428 HIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILL--HAYTLIANPPTKEALQFLEEYPNIIRWP 505 (622)
Q Consensus 428 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~--~~~~~~G~~l~~e~~e~~~~~p~l~~~~ 505 (622)
.++..+.++...++.|-..+..|......||.++|++.-..-+|....++ ..-...| .+++ . .-++-...
T Consensus 134 ~~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~~~~---~---l~~~g~~l 205 (284)
T 2ftz_A 134 XIFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXG--XDHT---X---MXLLGEXF 205 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCH---H---HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhC--CChh---H---HHHHHHHH
Confidence 35667777788999999999999765447899999987766555443221 1112223 2333 1 24677888
Q ss_pred HHHHHHhcCcccchhhh-hcCC-------CccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006994 506 SMIFRLANDLATSSDEV-KRGD-------VPKAIQCYMHETGASESDAREHIRDLITATWMKMNS 562 (622)
Q Consensus 506 ~~i~RL~NDI~S~kkE~-~rGd-------~~n~V~cyMkE~g~S~EeA~~~i~~mie~~wK~ln~ 562 (622)
++..-+.||+..+.-+. ..|. ..+...+| ..|.|.+.+++.++++.+.+..
T Consensus 206 G~aFQI~DD~lD~~~d~~~~GK~~g~Dl~K~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 264 (284)
T 2ftz_A 206 GVAFQIYDDLXDILGSFEKVGKDLGKDTEXVTLVXXV------GIQXAREMADXYYEEVLXGIES 264 (284)
T ss_dssp HHHHHHHHHHHHHHHHCCCC-----------CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhcCCHHhhCCCcchhccccchHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 88889999998876432 2232 12333333 3678899999999999887765
No 26
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=60.42 E-value=31 Score=35.12 Aligned_cols=118 Identities=14% Similarity=0.118 Sum_probs=68.7
Q ss_pred HHHHHHH--HHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHH-H-HHHHHhCCCCChHHHHhhhhhhhHHHHHH
Q 006994 431 PYLKKAW--ADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVIL-L-HAYTLIANPPTKEALQFLEEYPNIIRWPS 506 (622)
Q Consensus 431 ~~lk~~w--~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll-~-~~~~~~G~~l~~e~~e~~~~~p~l~~~~~ 506 (622)
..+.++. ..++.|-..+..|...+..||.++|+..-..-+|....+ + ..-...| .+++ ..-.+-...+
T Consensus 138 ~~l~~~~g~~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag--~~~~------~l~~~g~~lG 209 (297)
T 3m0g_A 138 AALAQASGAEGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAG--ADRG------PLTAYATALG 209 (297)
T ss_dssp HHHHHHHSTTTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCH------HHHHHHHHHH
T ss_pred HHHHHHHhHhHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcC--CCHH------HHHHHHHHHH
Confidence 3444444 567788888888875577899999998755544543221 1 1111123 2333 1246778888
Q ss_pred HHHHHhcCcccchhhh-hcC-----C----CccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006994 507 MIFRLANDLATSSDEV-KRG-----D----VPKAIQCYMHETGASESDAREHIRDLITATWMKMNS 562 (622)
Q Consensus 507 ~i~RL~NDI~S~kkE~-~rG-----d----~~n~V~cyMkE~g~S~EeA~~~i~~mie~~wK~ln~ 562 (622)
...-+.||+..+.-+. .-| | ..+.+.+| ..|.|.+.+++.++++.+.+..
T Consensus 210 ~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 269 (297)
T 3m0g_A 210 LAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLL------GLAGAKSRAADLVAEAEAALAP 269 (297)
T ss_dssp HHHHHHTTCC---------------------CCHHHHH------CSSHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999998875432 112 2 12444443 2467888899999988876653
No 27
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=58.26 E-value=50 Score=33.69 Aligned_cols=113 Identities=15% Similarity=0.132 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHH-HHHHHHHhCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCcc
Q 006994 438 ADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVI-LLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLA 516 (622)
Q Consensus 438 ~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~l-l~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~ 516 (622)
..++.|-..+..|. +..||.++|...-..-+|.... .+..-..++. .+++..+. .-++-+..+...-+.||+.
T Consensus 156 ~~~~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~~~~~ga~lag-a~~~~~~~---l~~~g~~lGlaFQI~DDil 229 (302)
T 3p8l_A 156 QGMVSGQMGDIEGE--KVSLTLEELAAVHEKKTGALIEFALIAGGVLAN-QTEEVIGL---LTQFAHHYGLAFQIRDDLL 229 (302)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT-CCHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcc--CCCCCHHHHHHHHHcCcHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 45677777777775 3478999999875444443322 1111111232 35555443 3567788888888999987
Q ss_pred cchhhh-hcC-----C----CccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006994 517 TSSDEV-KRG-----D----VPKAIQCYMHETGASESDAREHIRDLITATWMKMNS 562 (622)
Q Consensus 517 S~kkE~-~rG-----d----~~n~V~cyMkE~g~S~EeA~~~i~~mie~~wK~ln~ 562 (622)
.+.-+. .-| | ..+...+| ..+.|.+.+++.++++.+.++.
T Consensus 230 D~~~d~~~~GK~~g~Dl~egK~T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 279 (302)
T 3p8l_A 230 DATSTEADLGKKVGRDEALNKSTYPALL------GIAGAKDALTHQLAEGSAVLEK 279 (302)
T ss_dssp HTTC-----------------CCHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHhCCChhhHHhcCCCcHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 774331 112 1 12344333 4688999999999999887765
No 28
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=55.81 E-value=38 Score=34.44 Aligned_cols=112 Identities=13% Similarity=0.084 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHHH--HHHHhCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCc
Q 006994 438 ADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLH--AYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDL 515 (622)
Q Consensus 438 ~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~~--~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 515 (622)
..++.|-..+..|... .+|.++|++.-..-+|.....+. .-...| .+++..+. .-++-...++..-+.||+
T Consensus 148 ~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~lG~aFQI~DDi 220 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTFAVMSAADIAN--VDDTTKEH---LESYSYHLGMMFQIKDDL 220 (301)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 5677788888887543 78999999887766665432211 111123 45665444 356778888889999999
Q ss_pred ccchhhh-hcC-----C----CccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006994 516 ATSSDEV-KRG-----D----VPKAIQCYMHETGASESDAREHIRDLITATWMKMNS 562 (622)
Q Consensus 516 ~S~kkE~-~rG-----d----~~n~V~cyMkE~g~S~EeA~~~i~~mie~~wK~ln~ 562 (622)
..+.-+. .-| | ..+...+|- .+.|.+.+++.++++.+.+..
T Consensus 221 lD~~~d~~~~GK~~g~Dl~~gK~T~p~l~a------l~~a~~~a~~~~~~A~~~L~~ 271 (301)
T 1rtr_A 221 LDCYGDEAKLGKKVGSDLENNKSTYVSLLG------KDGAEDKLTYHRDAAVDELTQ 271 (301)
T ss_dssp HHHHHHHCC-------------CCHHHHHH------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCHHHhCCCcchHHHcCCCcHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 8775432 112 1 124443432 578889999999988877754
No 29
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=54.13 E-value=52 Score=33.58 Aligned_cols=112 Identities=10% Similarity=0.044 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHH-HHHHHHHhCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCccc
Q 006994 439 DMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVI-LLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLAT 517 (622)
Q Consensus 439 ~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~l-l~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S 517 (622)
.++.|-..+..|.. ..||.++|+..-..-+|.... .+..-..++...+++..+. .-.+-...+...-+.||+..
T Consensus 153 ~~~~GQ~lDl~~~~--~~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~---l~~~g~~lGlaFQI~DDilD 227 (304)
T 3lsn_A 153 GMVGGQAIDLGSVG--LKLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKA---LQTYAQAIGLAFQVQDDILD 227 (304)
T ss_dssp THHHHHHHHHHTTT--CCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHhHHHHHHccC--CCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 36777777777754 358999999885444443322 1111112333225555443 35677888888899999987
Q ss_pred chhhh-hcCC---------CccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 006994 518 SSDEV-KRGD---------VPKAIQCYMHETGASESDAREHIRDLITATWMKMN 561 (622)
Q Consensus 518 ~kkE~-~rGd---------~~n~V~cyMkE~g~S~EeA~~~i~~mie~~wK~ln 561 (622)
+.-+. .-|. ..+.+.+| ..|.|.+.+++.++++.+.++
T Consensus 228 ~~~~~~~~GK~~g~Dl~egK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 275 (304)
T 3lsn_A 228 VESDTATLGKRQGADIARDKPTYPALL------GLAAAKEYALELRDQALHALR 275 (304)
T ss_dssp HHHHHHHC------------CCHHHHH------CHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCChHHhCCCcccHHhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 75432 2222 12444444 468899999999998877664
No 30
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=53.60 E-value=62 Score=33.35 Aligned_cols=112 Identities=12% Similarity=0.085 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHHHHHHH--hCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCc
Q 006994 438 ADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTL--IANPPTKEALQFLEEYPNIIRWPSMIFRLANDL 515 (622)
Q Consensus 438 ~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 515 (622)
..++.|-..+..|.. ..||.++|+..-..-+|.....+ +..| ++...+++..+. .-++-+..++..-+.||+
T Consensus 158 ~~m~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~~a-~~~Ga~lag~a~~~~~~~---l~~~g~~lGlAFQI~DDi 231 (324)
T 3ts7_A 158 AGMVGGQAIDLASVG--KKLDLPGLENMHIRKTGALIRAS-VRLACLARPGLPAEQFDR---LDHYAKCIGLAFQIQDDI 231 (324)
T ss_dssp TTHHHHHHHHHHTTT--CCCCHHHHHHHHHHHTHHHHHHH-HHHHHTTSTTCCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccC--CCCCHHHHHHHHHhhHHHHHHHH-HHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 457778777778754 37899999988555445433222 2222 232245555443 356778888888899998
Q ss_pred ccchhhh-hcC-----C----CccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 006994 516 ATSSDEV-KRG-----D----VPKAIQCYMHETGASESDAREHIRDLITATWMKMN 561 (622)
Q Consensus 516 ~S~kkE~-~rG-----d----~~n~V~cyMkE~g~S~EeA~~~i~~mie~~wK~ln 561 (622)
..+.-+. .-| | ..+.+.+| ..|.|.+.+++.++++...+.
T Consensus 232 LD~~~d~~~~GK~~g~Dl~egK~T~p~l~------gle~a~~~a~~~~~~A~~~L~ 281 (324)
T 3ts7_A 232 LDEESDTQTLGKTRGKDRDHNKPNYPALL------GLSGAKEKAEEMHEAALESLA 281 (324)
T ss_dssp HHHTCC---------------CCCHHHHH------CHHHHHHHHHHHHHHHHHTTT
T ss_pred HhccCCHHHhCCCccchhhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 7764321 112 1 22444444 468899999999998876554
No 31
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=50.67 E-value=59 Score=33.63 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHH--HHHHHhCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCc
Q 006994 438 ADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILL--HAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDL 515 (622)
Q Consensus 438 ~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~--~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 515 (622)
..++.|-..+..|... .+|.++|+..-..-+|...... ..-...| .+++..+. .-++-...++..-+.||+
T Consensus 192 ~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a~~~Ga~lag--a~~~~~~~---l~~~g~~lGlAFQI~DDi 264 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFACEAGAIIAG--SNQAERQR---LRLFGEKIGLSFQLADDL 264 (335)
T ss_dssp TSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHhC--CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 5677888888888654 7899999988776666543221 1112123 45555444 356778888888999998
Q ss_pred ccchhhh-hcC-----C----CccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006994 516 ATSSDEV-KRG-----D----VPKAIQCYMHETGASESDAREHIRDLITATWMKMNS 562 (622)
Q Consensus 516 ~S~kkE~-~rG-----d----~~n~V~cyMkE~g~S~EeA~~~i~~mie~~wK~ln~ 562 (622)
..+.-+. .-| | ..+...+| ..|.|.+.+.+.++++.+.+..
T Consensus 265 LD~~gd~~~~GK~~g~Dl~egK~T~p~l~------~le~a~~~a~~~~~~A~~~L~~ 315 (335)
T 2h8o_A 265 LDLTADAATMGKATGKDAARGKGTLVALR------GEAWAREKLQEQVAEASELLAP 315 (335)
T ss_dssp HHHC-----------------CCCHHHHH------CHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHhcCCHHHhCCCcchHHhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 7765322 112 1 12444333 2578899999999988877654
No 32
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=48.58 E-value=1.4e+02 Score=30.59 Aligned_cols=86 Identities=13% Similarity=0.082 Sum_probs=55.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHHHHHHH--hCCCCChHHHHhhhhhhhHHHHH
Q 006994 428 HIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTL--IANPPTKEALQFLEEYPNIIRWP 505 (622)
Q Consensus 428 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~ 505 (622)
..+..+.++...++.|-+.+..|.. ...||.++|++.-..-+|....++ +..| ++. .+++..+. .-.+-+..
T Consensus 143 ~~~~~~~~~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~~~~-~~~ga~lag-~~~~~~~~---l~~~g~~l 216 (334)
T 3pko_A 143 SLIQNHIDAMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELFALS-CYQGAQLAG-APQSVIDR---TRDIGIAI 216 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHHHHH-HHHHHHHTT-CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHcC-CCHHHHHH---HHHHHHHH
Confidence 3456777888889999888888753 456899999987555555443221 1221 232 35555443 35667777
Q ss_pred HHHHHHhcCcccch
Q 006994 506 SMIFRLANDLATSS 519 (622)
Q Consensus 506 ~~i~RL~NDI~S~k 519 (622)
+...-+.||+..+.
T Consensus 217 G~aFQi~DD~ld~~ 230 (334)
T 3pko_A 217 GCAYQMLDDILDYA 230 (334)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcc
Confidence 88888888886654
No 33
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=47.78 E-value=71 Score=32.79 Aligned_cols=113 Identities=10% Similarity=0.057 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHH-HHHHHHhCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCccc
Q 006994 439 DMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVIL-LHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLAT 517 (622)
Q Consensus 439 ~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll-~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S 517 (622)
.++.|-..+..|. +..||.++|+..-..-+|..... +.+-..++...+++..+. .-.+-+..+...-+.||+..
T Consensus 152 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~---l~~~g~~lGlAFQI~DDiLD 226 (317)
T 4f62_A 152 GMITGQMIDLSSE--NKNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAK---LDAYAHAIGLAFQVQDDIID 226 (317)
T ss_dssp THHHHHHHHHHTS--SSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHhcc--CCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 4677777777775 44589999998865444443322 211112233245555443 35677888888889999987
Q ss_pred chhhh-hcCC---------CccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006994 518 SSDEV-KRGD---------VPKAIQCYMHETGASESDAREHIRDLITATWMKMNS 562 (622)
Q Consensus 518 ~kkE~-~rGd---------~~n~V~cyMkE~g~S~EeA~~~i~~mie~~wK~ln~ 562 (622)
+.-+. .-|. ..+...+| ..|.|++.+++.++++.+.+..
T Consensus 227 ~~gd~~~~GK~~g~Dl~egK~T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 275 (317)
T 4f62_A 227 LTSDTETLGKTQFSDAEANKATYPKLL------GLDGAKALVVRLHEQAIAQISE 275 (317)
T ss_dssp TC----------------CCCCHHHHH------HHHHHHHHHHHHHHHHHHHHGG
T ss_pred ccCChHhhCCCcchHHhcCCCcHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 75332 1121 22444444 3688999999999999877754
No 34
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=46.67 E-value=74 Score=33.17 Aligned_cols=87 Identities=9% Similarity=0.092 Sum_probs=57.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhh----------cCC-CCCHHhhhhhccccchHHHHHHHHH-HHhCCCCChHHHHhhh
Q 006994 429 IIPYLKKAWADMCKSFLLEAKWYS----------SGY-IPTLEEYMDNAWISVSGPVILLHAY-TLIANPPTKEALQFLE 496 (622)
Q Consensus 429 ~~~~lk~~w~~~~~a~l~EAkW~~----------~g~-vPtleEYl~~~~~SsG~~~ll~~~~-~~~G~~l~~e~~e~~~ 496 (622)
++..+.++...++.|-..+..|.. .+. .||.++|++.-..-+|....++... ..++ ..+++..+.
T Consensus 133 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~la-g~~~~~~~~-- 209 (358)
T 4dhd_A 133 FAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSV-SDDRGLAEA-- 209 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHH-CCCHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHc-CCCHHHHHH--
Confidence 466788888999999999999962 233 6799999987666666543322111 1122 235554433
Q ss_pred hhhhHHHHHHHHHHHhcCcccch
Q 006994 497 EYPNIIRWPSMIFRLANDLATSS 519 (622)
Q Consensus 497 ~~p~l~~~~~~i~RL~NDI~S~k 519 (622)
.-.+-...++..-+.||+..+.
T Consensus 210 -l~~~g~~lG~aFQI~DD~lD~~ 231 (358)
T 4dhd_A 210 -AWNFGMAAGVAFQIIDDVLDIY 231 (358)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHhc
Confidence 3567778888888999987664
No 35
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=44.40 E-value=75 Score=32.74 Aligned_cols=87 Identities=15% Similarity=0.174 Sum_probs=58.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHHHHH-HHhCCCCChHHHHhhhhhhhHHHHHHH
Q 006994 429 IIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAY-TLIANPPTKEALQFLEEYPNIIRWPSM 507 (622)
Q Consensus 429 ~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~~~~-~~~G~~l~~e~~e~~~~~p~l~~~~~~ 507 (622)
++..+.++...++.|-..+..|... ...|.++|++.-..-+|....++... ..++. .+++..+. .-++-...++
T Consensus 138 ~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag-~~~~~~~~---l~~~g~~lG~ 212 (342)
T 1wy0_A 138 VLEVIVKASNELCEGQARDLEFEKK-STVTIEEYMEMISGKTGALFEASAKVGGIIGT-DNEEYIKA---LSSWGRNVGI 212 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC-CCHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHHH
Confidence 4567778888999999999999753 34599999988776666543322111 11222 35555444 3567888888
Q ss_pred HHHHhcCcccchh
Q 006994 508 IFRLANDLATSSD 520 (622)
Q Consensus 508 i~RL~NDI~S~kk 520 (622)
..-+.||+..+.-
T Consensus 213 aFQI~DD~lD~~~ 225 (342)
T 1wy0_A 213 AFQIWDDVLDLIA 225 (342)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHhccC
Confidence 8899999987643
No 36
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=43.39 E-value=1.7e+02 Score=29.53 Aligned_cols=118 Identities=10% Similarity=0.021 Sum_probs=68.2
Q ss_pred HHHHH--HHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHH-HHHHHhCCCCChHHHHhhhhhhhHHHHHHHH
Q 006994 432 YLKKA--WADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILL-HAYTLIANPPTKEALQFLEEYPNIIRWPSMI 508 (622)
Q Consensus 432 ~lk~~--w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~-~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i 508 (622)
.+.++ ...++.|-..+..|. +..||.++|...-..-+|....++ ..-..++. .+++..+. .-++-+..+..
T Consensus 137 ~l~~~~g~~~~~~GQ~lDl~~~--~~~~~~~~y~~i~~~KTg~L~~~a~~~ga~lag-a~~~~~~~---l~~~g~~lGla 210 (291)
T 3npk_A 137 TLAFNAGLNGMVIGQAIDCFFE--DKRLSLNELEFLHTHKTARLIAAALKMGCEICE-LNNEESNQ---IYKLGLKLGLI 210 (291)
T ss_dssp HHHHHHSTTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT-CCHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHhcc--CCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHHHH
Confidence 34444 556677777777774 356899999987554445433221 11111222 45554433 35677888888
Q ss_pred HHHhcCcccchhhh-hcCCC-------ccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 006994 509 FRLANDLATSSDEV-KRGDV-------PKAIQCYMHETGASESDAREHIRDLITATWMKMN 561 (622)
Q Consensus 509 ~RL~NDI~S~kkE~-~rGd~-------~n~V~cyMkE~g~S~EeA~~~i~~mie~~wK~ln 561 (622)
.-+.||+..+.-.. ..|.. .+.+.++ ..+.|.+..+++++++.+.++
T Consensus 211 FQI~DDiLD~~gd~~~~GK~~~~d~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l~ 265 (291)
T 3npk_A 211 FQINDDIIDVTTSQEQSGKPTNNDIHKNSFVNLL------GLEQAIKTKENLLNECEQDLE 265 (291)
T ss_dssp HHHHHHHHHHC----------------CCHHHHH------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCChHHHCCccchhcCcchHHHHH------HHHHhHHHHHHHHHHHHHHHH
Confidence 88999987765432 22322 1222222 357888888899998887765
No 37
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=42.79 E-value=62 Score=33.09 Aligned_cols=115 Identities=11% Similarity=0.066 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHH-HHHHHHhCCCCChHHH-HhhhhhhhHHHHHHHHHHHhcC
Q 006994 437 WADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVIL-LHAYTLIANPPTKEAL-QFLEEYPNIIRWPSMIFRLAND 514 (622)
Q Consensus 437 w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll-~~~~~~~G~~l~~e~~-e~~~~~p~l~~~~~~i~RL~ND 514 (622)
...++.|-..+..|. +..||+++|+..-..-+|..+.. +..-..++. .+++.. +. .-.+-+..+...-+.||
T Consensus 158 ~~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~lga~lag-a~~~~~~~~---l~~~g~~lGlaFQI~DD 231 (311)
T 3llw_A 158 IKGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISASLIMGLVASG-IKDEELFKW---LQAFGLKMGLCFQVLDD 231 (311)
T ss_dssp TTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC-CCCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC-CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 356677777777775 56789999998755444443321 111111222 344443 33 35677888888889999
Q ss_pred cccchhh-hhcCCCccchhhhhhcCCC------CHHHHHHHHHHHHHHHHHHHHH
Q 006994 515 LATSSDE-VKRGDVPKAIQCYMHETGA------SESDAREHIRDLITATWMKMNS 562 (622)
Q Consensus 515 I~S~kkE-~~rGd~~n~V~cyMkE~g~------S~EeA~~~i~~mie~~wK~ln~ 562 (622)
+..+.-+ ..-|..... ++... ..|.|.+..+++++++.+.+..
T Consensus 232 iLD~~gd~~~~GK~~g~-----~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~ 281 (311)
T 3llw_A 232 IIDVTQDEEESGKTTHL-----DSAKNSFVNLLGLERANNYAQTLKTEVLNDLDA 281 (311)
T ss_dssp HHHHHC------------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhccCChHHHCccccc-----ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9877543 223432211 23333 3578899999999988877653
No 38
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=42.59 E-value=88 Score=31.99 Aligned_cols=113 Identities=12% Similarity=0.089 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHH-HHHHHHHHhCCC-CChHHHHhhhhhhhHHHHHHHHHHHhcCc
Q 006994 438 ADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPV-ILLHAYTLIANP-PTKEALQFLEEYPNIIRWPSMIFRLANDL 515 (622)
Q Consensus 438 ~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~-ll~~~~~~~G~~-l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 515 (622)
..++.|-..+..|.. ...||.++|+..-..-+|... +.+.. ..++.. .+++..+.+ -.+-...+...-+.||+
T Consensus 158 ~~m~~GQ~lDl~~~~-~~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l---~~~g~~lGlaFQI~DDi 232 (313)
T 3lom_A 158 SGMVSGQSLDLSELA-KSSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSAL---RTYGKHIGLVFQMQDDY 232 (313)
T ss_dssp TTHHHHHHHHHHTTT-SSCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccC-CCCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 456778777888753 237899999987654444433 33333 334432 566655443 56778888888899998
Q ss_pred ccchhhh-hcC-----C----CccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 006994 516 ATSSDEV-KRG-----D----VPKAIQCYMHETGASESDAREHIRDLITATWMKMN 561 (622)
Q Consensus 516 ~S~kkE~-~rG-----d----~~n~V~cyMkE~g~S~EeA~~~i~~mie~~wK~ln 561 (622)
..+.-+. .-| | ..+.+.+| ..+.|.+.+++.++++.+.+.
T Consensus 233 lD~~gd~~~~GK~~g~Dl~~gK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 282 (313)
T 3lom_A 233 LDLYAPTQILGKGRSSDQANQKTTFATLF------NKQQLEEEIAVHYQIAMDSLR 282 (313)
T ss_dssp HHHHCC---------------CCCHHHHS------CHHHHHHHHHHHHHHHHHTTT
T ss_pred HhccCCHHhhCCCCcchhhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 7764322 112 1 12444333 468899999999998876654
No 39
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=41.07 E-value=24 Score=26.57 Aligned_cols=33 Identities=30% Similarity=0.361 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhhcccccccChhhhHHHHHHHHHh
Q 006994 89 QRIEKLKGEVRLMLENKEVDYVDALHQLEIVDNLQRL 125 (622)
Q Consensus 89 ~~~~~lk~~v~~~l~~~~~~~~~~~~~L~lID~lqRL 125 (622)
+++.-|.++||.-|+.+ .+.++++-+..+||-|
T Consensus 16 EeIRwlIeE~Rh~Lk~T----ensfeQItfmqalQLl 48 (58)
T 1pd3_A 16 EEIRWLIEEVRHRLKIT----ENSFEQITFMQALQLL 48 (58)
T ss_dssp HHHHHHHHHHHHTCCCC----TTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh----hchHHHHHHHHHHHHH
Confidence 44556778888888877 7999999999999865
No 40
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=40.51 E-value=54 Score=33.37 Aligned_cols=113 Identities=12% Similarity=0.096 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHHHHHHH--hCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCc
Q 006994 438 ADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTL--IANPPTKEALQFLEEYPNIIRWPSMIFRLANDL 515 (622)
Q Consensus 438 ~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 515 (622)
..++.|-..+..|. +..||.++|+..-..-+|....++ +..| ++...+++.. ...-++-+..+...-+.||+
T Consensus 158 ~~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L~~~~-~~~ga~lag~~~~~~~---~~l~~~g~~lG~aFQI~DDi 231 (302)
T 3p8r_A 158 QGMCLGQALDLAAE--NRLISLEELETIHRNKTGALMRCA-IRLGALAAGEKGRAML---PHLDRYAEAVGLAFQVQDDI 231 (302)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTHHHHTTH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHHHHHH-HHHHHHHcCCCCHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 46778888888885 457899999988654444433221 2221 1211122222 22356778888888899998
Q ss_pred ccchhhh-hcCC---------CccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006994 516 ATSSDEV-KRGD---------VPKAIQCYMHETGASESDAREHIRDLITATWMKMNS 562 (622)
Q Consensus 516 ~S~kkE~-~rGd---------~~n~V~cyMkE~g~S~EeA~~~i~~mie~~wK~ln~ 562 (622)
..+.-+. ..|. ..+...+| ..+.|.+.+++.++++.+.++.
T Consensus 232 lD~~~~~~~~GK~~g~Dl~egK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 282 (302)
T 3p8r_A 232 LDIISDTETLGKPQGSDQELNKSTYPALL------GLEGAQQKAHTLLQEALLALEA 282 (302)
T ss_dssp HHHTTC---------------CCCHHHHH------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhccCCHHHhCCCcchHHhcCCchHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 7765432 1121 12444444 3578999999999988877654
No 41
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=39.49 E-value=1.1e+02 Score=31.40 Aligned_cols=114 Identities=9% Similarity=0.075 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHH-HHHHHHhCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCcc
Q 006994 438 ADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVIL-LHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLA 516 (622)
Q Consensus 438 ~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll-~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~ 516 (622)
..++.|-..+..|.. ...||.++|+..-..-+|..... +..-..++. .+++..+. .-++-+..++..-+.||+.
T Consensus 180 ~~m~~GQ~lDl~~~~-~~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~lag-a~~~~~~~---l~~~g~~lGlAFQI~DDiL 254 (324)
T 3uca_A 180 DGMIGGQIVDIINED-KEEISLKELDYMHLKKTGELIKASIMSGAVLAE-ASEGDIKK---LEGFGYKLGLAFQIKDDIL 254 (324)
T ss_dssp TTHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT-CCHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcCC-CCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 457788888888853 23689999998854434433221 111111232 35555443 3567788888888999987
Q ss_pred cchhhh-hcC-----CC----ccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006994 517 TSSDEV-KRG-----DV----PKAIQCYMHETGASESDAREHIRDLITATWMKMNS 562 (622)
Q Consensus 517 S~kkE~-~rG-----d~----~n~V~cyMkE~g~S~EeA~~~i~~mie~~wK~ln~ 562 (622)
.+.-+. .-| |. .+...+| ..+.|.+.+++.++++.+.+..
T Consensus 255 D~~gd~~~~GK~~g~Dl~egK~T~p~l~------al~~a~~~a~~~~~~A~~~L~~ 304 (324)
T 3uca_A 255 DVVGNAKDLGKNVHKDQESNKNNYITIF------GLEECKKKCVNITEECIEILSS 304 (324)
T ss_dssp HHCCC-----------------CHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCCHHHhCCCcchHhhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 764321 112 11 2444333 3688999999999999877754
No 42
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=38.77 E-value=1.2e+02 Score=30.98 Aligned_cols=113 Identities=10% Similarity=0.027 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHH-HHHHHHhCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCcc
Q 006994 438 ADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVIL-LHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLA 516 (622)
Q Consensus 438 ~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll-~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~ 516 (622)
..++.|-..+..|. +..+|.++|...-..-+|....+ +..-..++. .+++..+. .-.+-...+...-+.||+.
T Consensus 155 ~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~~ga~lag-a~~~~~~~---l~~~g~~lGlaFQI~DDiL 228 (309)
T 3pde_A 155 SGMVAGQAKDIQSE--HVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQ-APEAQWPA---YLQFADAFGLAFQIYDDIL 228 (309)
T ss_dssp TTHHHHHHHHHHTT--TCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT-CCGGGHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcc--CCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 34666777777774 44689999998754444443221 111111232 34444333 3567778888888999987
Q ss_pred cchhhh-hcC-----CC----ccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006994 517 TSSDEV-KRG-----DV----PKAIQCYMHETGASESDAREHIRDLITATWMKMNS 562 (622)
Q Consensus 517 S~kkE~-~rG-----d~----~n~V~cyMkE~g~S~EeA~~~i~~mie~~wK~ln~ 562 (622)
.+.-+. .-| |. .+.+.+| ..+.|.+..+++++++.+.+..
T Consensus 229 D~~gd~~~~GK~~g~Dl~egK~T~p~l~------al~~a~~~~~~~~~~a~~~l~~ 278 (309)
T 3pde_A 229 DVVSSPAEMGKATQKDADEAKNTYPGKL------GLIGANQALIDTIHSGQAALQG 278 (309)
T ss_dssp HHHCC-----------CTTTSSSHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCCHHHhCCCccchhhcCCccHHHHH------HHHHhHHHHHHHHHHHHHHHHH
Confidence 764321 112 21 2333333 3578888999999988877654
No 43
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=33.01 E-value=1.3e+02 Score=30.37 Aligned_cols=112 Identities=14% Similarity=0.119 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHHHHHHH--h-CCCCChHHHHhhhhhhhHHHHHHHHHHHhcC
Q 006994 438 ADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTL--I-ANPPTKEALQFLEEYPNIIRWPSMIFRLAND 514 (622)
Q Consensus 438 ~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~~~~~~--~-G~~l~~e~~e~~~~~p~l~~~~~~i~RL~ND 514 (622)
..++.|-..+..|... .+|.++|+..-..-+|.....+ +..| + +. .+++..+. .-++-...++..-+.||
T Consensus 152 ~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~-~~~ga~l~ag-~~~~~~~~---l~~~g~~lG~aFQi~DD 224 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIRAA-VRLGALSAGD-KGRRALPV---LDKYAESIGLAFQVQDD 224 (299)
T ss_dssp TTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTH-HHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHhCC-CCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4667888888888543 7899999988755555443221 2221 1 11 23343333 35677888888889999
Q ss_pred cccchhhh-hcCC---------CccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006994 515 LATSSDEV-KRGD---------VPKAIQCYMHETGASESDAREHIRDLITATWMKMNS 562 (622)
Q Consensus 515 I~S~kkE~-~rGd---------~~n~V~cyMkE~g~S~EeA~~~i~~mie~~wK~ln~ 562 (622)
+..+.-+. .-|. ..+...+|- .+.|.+.+++.++++.+.+..
T Consensus 225 ~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~------l~~a~~~~~~~~~~A~~~L~~ 276 (299)
T 1rqj_A 225 ILDVVGDTATLGKRQGADQQLGKSTYPALLG------LEQARKKARDLIDDARQSLKQ 276 (299)
T ss_dssp HHHHHSCHHHHSSCTTHHHHHTCCCHHHHHC------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHhCCChhhHHHcCCCcHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 87775432 1222 224444432 467888999999999887765
No 44
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=31.37 E-value=1e+02 Score=32.09 Aligned_cols=85 Identities=9% Similarity=0.001 Sum_probs=58.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHHHHHHH--hCCCCChHHHHhhhhhhhHHHHHH
Q 006994 429 IIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTL--IANPPTKEALQFLEEYPNIIRWPS 506 (622)
Q Consensus 429 ~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~~ 506 (622)
++..+.++...++.|-..+..|.. ...||.++|+..-..-+|.....+ +..| ++. .+++..+. .-.+-+..+
T Consensus 144 ~~~~~~~~~~~l~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~-~~~ga~lag-~~~~~~~~---l~~~g~~lG 217 (352)
T 3nf2_A 144 ATRRLTKASRSLIDGQAQDISYEH-RDRVSVEECLEMEGNKTGALLACA-SSIGAVLGG-ADERTADT---LEKYGYHLG 217 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-CSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT-CCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc-CCCCCHHHHHHHHHcccHHHHHHH-HHHHHHHcC-CCHHHHHH---HHHHHHHHH
Confidence 456778888999999999999964 346899999987766666544322 2221 222 45565444 356788888
Q ss_pred HHHHHhcCcccch
Q 006994 507 MIFRLANDLATSS 519 (622)
Q Consensus 507 ~i~RL~NDI~S~k 519 (622)
+..-+.||+..+-
T Consensus 218 ~aFQi~DD~ld~~ 230 (352)
T 3nf2_A 218 LAFQAVDDLLGIW 230 (352)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 8888999987764
No 45
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=30.32 E-value=46 Score=33.68 Aligned_cols=110 Identities=10% Similarity=0.048 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhhcC-CCCCHHhhhhhccccchHHH-HHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCcc
Q 006994 439 DMCKSFLLEAKWYSSG-YIPTLEEYMDNAWISVSGPV-ILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLA 516 (622)
Q Consensus 439 ~~~~a~l~EAkW~~~g-~vPtleEYl~~~~~SsG~~~-ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~ 516 (622)
.++.|-..+..|...+ ..+|.++|+..-..-+|... +.+..-..++. .+++..+. .-++-...+...-+.||+.
T Consensus 161 ~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag-~~~~~~~~---l~~~g~~lG~aFQI~DDiL 236 (293)
T 2j1p_A 161 GLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGG-GSDEEIER---LRKFARCIGLLFQVVDDIL 236 (293)
T ss_dssp THHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTT-CCHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4566666666664321 24688999887544344332 21111111232 45665444 3567788888889999998
Q ss_pred cchhhhhcCCCccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006994 517 TSSDEVKRGDVPKAIQCYMHETGASESDAREHIRDLITATWMKMNS 562 (622)
Q Consensus 517 S~kkE~~rGd~~n~V~cyMkE~g~S~EeA~~~i~~mie~~wK~ln~ 562 (622)
.+..+. ..+...+| ..|.|.+.+.+.++++.+.+..
T Consensus 237 D~~~~~----K~T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 272 (293)
T 2j1p_A 237 DVTKSS----KLTYPKLM------GLEKSREFAEKLNTEARDQLLG 272 (293)
T ss_dssp HHHC------CCCHHHHH------HHHHHHHHHHHHHHHHHHHTTT
T ss_pred HccCCc----cccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 775433 33444444 4578888899988888876654
No 46
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=29.99 E-value=18 Score=41.86 Aligned_cols=90 Identities=17% Similarity=0.214 Sum_probs=38.6
Q ss_pred CCCCCCCCCcCccccCCchhh-hhHHHHHHHHHHHHHHHHhhcccc--cccChhhhHHHHHHHHHhCCccccHHHHHHHH
Q 006994 63 ANYQPSMWGYDYLQSLSNEYV-VESYAQRIEKLKGEVRLMLENKEV--DYVDALHQLEIVDNLQRLGVSYHFEDEIKRFL 139 (622)
Q Consensus 63 ~~~~ps~w~~~fl~~~~~~~~-~~~~~~~~~~lk~~v~~~l~~~~~--~~~~~~~~L~lID~lqRLGi~~hF~~EI~~~L 139 (622)
.+|+|++|+++++.++..++. ...+.++++.|+++||+|+.+.+. .-...++.=| |-.+..++ -+=.----+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~S~S~YDTAW-Vamvp~~~--~~~~p~Fp~~~ 80 (785)
T 3s9v_A 4 REFPPGFWKDDLIDSLTSSHKVAASDEKRIETLISEIKNMFRCMGYGETNPSAYDTAW-VARIPAVD--GSDNPHFPETV 80 (785)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHHHHHCSSCCCCCCHHHHHH-HTTSBCTT--SCSSBSSHHHH
T ss_pred ccCCcccCcccccccCCCccccCcchhHHHHHHHHHHHHHhhcCCCCcccCcHHHhhH-HhccccCC--CCCCCCchHHH
Confidence 468999999999998766554 344678889999999999942100 0035556556 43444443 12112224578
Q ss_pred HHHHhhcCCCccccccc
Q 006994 140 SRIYNERNSRSSYHAKE 156 (622)
Q Consensus 140 ~~i~~~~~~~~~~~~r~ 156 (622)
+.|-++...+| +||..
T Consensus 81 ~wil~nQ~~DG-sWg~~ 96 (785)
T 3s9v_A 81 EWILQNQLKDG-SWGEG 96 (785)
T ss_dssp HHHHHCCCTTS-CCSCS
T ss_pred HHHHHccCCCC-CCCCC
Confidence 88877655555 57754
No 47
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=29.39 E-value=2.2e+02 Score=22.81 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=34.5
Q ss_pred ChhhhHHHHHHHHHhCCccccHHHHHHHHHHHHhhcCCCccccccccccCChHHHHHHHHHHH-hcCccccc
Q 006994 111 DALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLR-QHGFDMHA 181 (622)
Q Consensus 111 ~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~r~~~~~dl~~tal~FRLLR-~hGy~vS~ 181 (622)
..+..=++...+.++|+. ++|+++++..+ +.++.| ....+=...+|.-.-.+ +.|+.++.
T Consensus 25 G~I~~~el~~~l~~~g~~---~~~~~~i~~~~----D~d~dG----~i~~~EF~~~~~~~~~~~~~g~~lP~ 85 (95)
T 1c07_A 25 GFVSGLEVREIFLKTGLP---STLLAHIWSLC----DTKDCG----KLSKDQFALAFHLISQKLIKGIDPPH 85 (95)
T ss_dssp SEECHHHHHHHHHTTTCC---HHHHHHHHHHH----CTTCSS----SEETTTHHHHHHHHHHHHTSCCCCCS
T ss_pred CcEeHHHHHHHHHHcCCC---HHHHHHHHHHH----CCCCCC----cCCHHHHHHHHHHHHHHHHcCCCCCC
Confidence 445556778888999976 67777766544 212111 11223334445444444 78998876
No 48
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=28.39 E-value=2e+02 Score=29.48 Aligned_cols=88 Identities=14% Similarity=0.166 Sum_probs=55.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHH-HHHHHhCCCCChHHHHhhhhhhhHHHHHH
Q 006994 428 HIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILL-HAYTLIANPPTKEALQFLEEYPNIIRWPS 506 (622)
Q Consensus 428 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~-~~~~~~G~~l~~e~~e~~~~~p~l~~~~~ 506 (622)
.++..+.++...++.|-..+..|.. ...+|+++|++.-..-+|.....+ ..-..++. .+++..+. .-++-...+
T Consensus 153 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag-~~~~~~~~---l~~~g~~lG 227 (348)
T 3apz_A 153 EVVALLATAVEHLVTGETMEITSST-EQRYSMDYYMQKTYYKTASLISNSCKAVAVLTG-QTAEVAVL---AFEYGRNLG 227 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCH-HHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTT-CCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC-cCHHHHHH---HHHHHHHHH
Confidence 4566777888888999888777643 235799999987555444433222 11111222 35554433 356777888
Q ss_pred HHHHHhcCcccchh
Q 006994 507 MIFRLANDLATSSD 520 (622)
Q Consensus 507 ~i~RL~NDI~S~kk 520 (622)
+..-+.||+..+.-
T Consensus 228 ~aFQi~DD~lD~~g 241 (348)
T 3apz_A 228 LAFQLIDDILDFTG 241 (348)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccC
Confidence 88889999877654
No 49
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=26.65 E-value=2.2e+02 Score=28.63 Aligned_cols=85 Identities=15% Similarity=0.239 Sum_probs=57.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHHHHH-HHhCCCCChHHHHhhhhhhhHHHHH
Q 006994 427 VHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAY-TLIANPPTKEALQFLEEYPNIIRWP 505 (622)
Q Consensus 427 ~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~~~~-~~~G~~l~~e~~e~~~~~p~l~~~~ 505 (622)
+.....+.+.+..++.|-..+..|......||.++|+..-..-+|....++... ..++. .++ ..-.+-...
T Consensus 110 ~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~-~~~-------~l~~~g~~l 181 (301)
T 2q80_A 110 PDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSD-YKE-------DLKPLLNTL 181 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCS-------CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCC-ChH-------HHHHHHHHH
Confidence 345666888889999999999999866667999999988776666543322111 11222 221 124567778
Q ss_pred HHHHHHhcCcccch
Q 006994 506 SMIFRLANDLATSS 519 (622)
Q Consensus 506 ~~i~RL~NDI~S~k 519 (622)
+...-+.||+..+.
T Consensus 182 G~aFQi~DD~ld~~ 195 (301)
T 2q80_A 182 GLFFQIRDDYANLH 195 (301)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhc
Confidence 88888888887664
No 50
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=25.62 E-value=1.2e+02 Score=31.24 Aligned_cols=87 Identities=16% Similarity=0.255 Sum_probs=56.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcC--CCCCHHhhhhhccccchHHHHHHHHH-HHhCCCCChHHHHhhhhhhhHHHHH
Q 006994 429 IIPYLKKAWADMCKSFLLEAKWYSSG--YIPTLEEYMDNAWISVSGPVILLHAY-TLIANPPTKEALQFLEEYPNIIRWP 505 (622)
Q Consensus 429 ~~~~lk~~w~~~~~a~l~EAkW~~~g--~vPtleEYl~~~~~SsG~~~ll~~~~-~~~G~~l~~e~~e~~~~~p~l~~~~ 505 (622)
++..+.+....++.|-..+..|.... ..||.++|+..-..-+|....++... ..++. .+++ . ...-.+-+..
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag-~~~~-~---~~l~~~g~~l 206 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSP-SSHH-G---HSLVPFINLL 206 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCC-C----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcC-CcHH-H---HHHHHHHHHH
Confidence 45567778888999999999998654 57899999988776666543222111 11222 2222 2 2235678888
Q ss_pred HHHHHHhcCcccchh
Q 006994 506 SMIFRLANDLATSSD 520 (622)
Q Consensus 506 ~~i~RL~NDI~S~kk 520 (622)
++..-+.||+..+.-
T Consensus 207 G~aFQi~DD~ld~~~ 221 (340)
T 2e8v_A 207 GIIYQIRDDYLNLKD 221 (340)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccC
Confidence 899999999987643
No 51
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=23.92 E-value=84 Score=31.46 Aligned_cols=94 Identities=9% Similarity=-0.045 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHH-HHHHHhCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCccc
Q 006994 439 DMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILL-HAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLAT 517 (622)
Q Consensus 439 ~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~-~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S 517 (622)
.++.|-..+..|.. ..||+++|+..-..-+|....++ ..=..++. .+++..+. .-++-+..++..-+.||+..
T Consensus 150 ~~~~GQ~lDl~~~~--~~~t~~~y~~~i~~KTa~L~~~a~~lGailag-a~~~~~~~---l~~~G~~lG~aFQI~DD~~~ 223 (274)
T 3kra_B 150 GMISGLHREEEIVD--GNTSLDFIEYVCKKKYGEMHACGAACGAILGG-AAEEEIQK---LRNFGLYQGTLRGMMEMKNS 223 (274)
T ss_dssp THHHHHHHHTTCCT--TSSCHHHHHHHHHHHTHHHHHHHHHHHHHHTT-CCHHHHHH---HHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHhHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHHHHHHHHHhhcc
Confidence 35666666666643 37899999976544444433221 11111232 45555444 35678888888999999611
Q ss_pred chhhhhcCCCccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 006994 518 SSDEVKRGDVPKAIQCYMHETGASESDAREHIRDLITATWMKMN 561 (622)
Q Consensus 518 ~kkE~~rGd~~n~V~cyMkE~g~S~EeA~~~i~~mie~~wK~ln 561 (622)
..|++.+.+.++.+.+-+.|.
T Consensus 224 -----------------------~~~~~~~~~~~~~~~A~~~L~ 244 (274)
T 3kra_B 224 -----------------------HQLIDENIIGKLKELALEELG 244 (274)
T ss_dssp -----------------------SCCCCHHHHHHHHHHHHHHHT
T ss_pred -----------------------ccHHHHHHHHHHHHHHHHHHH
Confidence 114556666676676666554
No 52
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=23.89 E-value=1.7e+02 Score=29.90 Aligned_cols=88 Identities=8% Similarity=0.056 Sum_probs=59.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhhhhhccccchHHHHHHHHHH-HhCCCCChHHHHhhhhhhhHHHHHH
Q 006994 428 HIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYT-LIANPPTKEALQFLEEYPNIIRWPS 506 (622)
Q Consensus 428 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~SsG~~~ll~~~~~-~~G~~l~~e~~e~~~~~p~l~~~~~ 506 (622)
.++..+.++...++.|-..+..|.. +..||.++|++.-..-+|.....+...- .++. .+++..+. .-++-...+
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag-~~~~~~~~---l~~~g~~lG 204 (325)
T 3aqb_B 130 KFHQIFSKTILEVCFGEFDQMADRF-NYPVSFTAYLRRINRKTAILIEASCHLGALSSQ-LDEQSTYH---IKQFGHCIG 204 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT-CCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTT-CCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc-CCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHH
Confidence 3566777888899999999999864 3368999999887766665533221111 1222 45555443 356778888
Q ss_pred HHHHHhcCcccchh
Q 006994 507 MIFRLANDLATSSD 520 (622)
Q Consensus 507 ~i~RL~NDI~S~kk 520 (622)
...-+.||+..+.-
T Consensus 205 ~afQi~DD~ld~~~ 218 (325)
T 3aqb_B 205 MSYQIIDDILDYTS 218 (325)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccC
Confidence 88889999877643
No 53
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=22.90 E-value=1.7e+02 Score=23.24 Aligned_cols=60 Identities=8% Similarity=0.113 Sum_probs=34.7
Q ss_pred ChhhhHHHHHHHHHhCCccccHHHHHHHHHHHHhhcCCCccccccccccCChHHHHHHHHHHHhcCccccc
Q 006994 111 DALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHA 181 (622)
Q Consensus 111 ~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~r~~~~~dl~~tal~FRLLR~hGy~vS~ 181 (622)
..+..=++...++++|++ ++|+++++..+ +.++.| ....+=...+|.-.-.++.|+.+++
T Consensus 24 G~I~~~el~~~l~~~g~~---~~~~~~i~~~~----D~d~dG----~i~~~EF~~~~~~~~~~~~g~~lp~ 83 (92)
T 1fi6_A 24 GFIPGSAAKEFFTKSKLP---ILELSHIWELS----DFDKDG----ALTLDEFCAAFHLVVARKNGYDLPE 83 (92)
T ss_dssp CEEEHHHHHHHHHHHSSC---HHHHHHHHHHH----CTTCSS----EEEHHHHHHHHHHHHHHHHSCCCCC
T ss_pred CcCcHHHHHHHHHHcCCC---HHHHHHHHHHH----CCCCCC----CCCHHHHHHHHHHHHHHHcCCCCCc
Confidence 345566788889999976 66777766543 222111 0111223344444446688999887
No 54
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=21.26 E-value=3e+02 Score=22.35 Aligned_cols=61 Identities=13% Similarity=0.192 Sum_probs=40.0
Q ss_pred ChhhhHHHHHHHHHhCCccccHHHHHHHHHHHHhhcCCCccccccccccCChHHHHHHHHHHHhcCccccccc
Q 006994 111 DALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQD 183 (622)
Q Consensus 111 ~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~r~~~~~dl~~tal~FRLLR~hGy~vS~~d 183 (622)
..+..=++...+.++|++ ++|+++++..+ +.++-| ....+=...+|.-.-+.|+|+.++. +
T Consensus 26 G~Is~~el~~~l~~~~l~---~~~l~~i~~~~----D~d~dG----~i~~~EF~~~~~~~~~~~~g~~~~~-~ 86 (99)
T 1qjt_A 26 GRVLALDAAAFLKKSGLP---DLILGKIWDLA----DTDGKG----VLSKQEFFVALRLVACAQNGLEVSL-S 86 (99)
T ss_dssp SCCCSHHHHHHHHTSSSC---HHHHHHHHHHH----CCSSSS----SCCSHHHHHHHHHHHHHTTTCCSSG-G
T ss_pred CcCCHHHHHHHHHHcCCC---HHHHHHHHHHH----CCCCCC----cCCHHHHHHHHHHHHHHHcCCCCCh-h
Confidence 344555677788899986 67777766544 222111 1233446677888889999999998 5
Done!