Query 006995
Match_columns 622
No_of_seqs 430 out of 3069
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 17:26:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006995.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006995hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02927 SucB_Actino 2-oxoglu 100.0 2E-102 4E-107 876.8 53.8 531 86-622 2-570 (590)
2 TIGR01348 PDHac_trf_long pyruv 100.0 8.3E-97 2E-101 824.7 52.3 510 88-622 2-529 (546)
3 PRK11854 aceF pyruvate dehydro 100.0 3.1E-92 6.6E-97 801.7 52.1 501 84-622 103-616 (633)
4 PRK11855 dihydrolipoamide acet 100.0 5.6E-91 1.2E-95 781.4 53.1 517 86-622 2-530 (547)
5 PRK05704 dihydrolipoamide succ 100.0 2.7E-84 5.8E-89 699.2 39.1 382 213-622 3-388 (407)
6 TIGR01347 sucB 2-oxoglutarate 100.0 1.1E-83 2.4E-88 693.0 39.4 380 213-622 1-384 (403)
7 PLN02744 dihydrolipoyllysine-r 100.0 2.1E-83 4.6E-88 705.0 37.7 390 207-622 107-522 (539)
8 KOG0557 Dihydrolipoamide acety 100.0 5.7E-83 1.2E-87 668.4 28.1 399 209-622 35-453 (470)
9 PLN02528 2-oxoisovalerate dehy 100.0 3.9E-81 8.5E-86 677.0 39.9 393 215-622 1-396 (416)
10 TIGR01349 PDHac_trf_mito pyruv 100.0 2.9E-81 6.3E-86 681.6 39.0 393 214-622 1-418 (435)
11 COG0508 AceF Pyruvate/2-oxoglu 100.0 1.1E-78 2.3E-83 655.2 33.3 381 213-622 3-386 (404)
12 KOG0558 Dihydrolipoamide trans 100.0 4.1E-77 9E-82 597.5 24.2 392 82-622 60-454 (474)
13 PLN02226 2-oxoglutarate dehydr 100.0 1.6E-74 3.4E-79 622.8 35.3 344 213-622 92-444 (463)
14 PRK11856 branched-chain alpha- 100.0 6.7E-73 1.4E-77 616.6 39.8 384 213-622 3-393 (411)
15 PTZ00144 dihydrolipoamide succ 100.0 2.8E-73 6.1E-78 609.7 36.1 353 211-622 43-399 (418)
16 PRK14843 dihydrolipoamide acet 100.0 6.8E-68 1.5E-72 559.7 26.6 279 328-622 48-330 (347)
17 PRK11857 dihydrolipoamide acet 100.0 1.9E-67 4.1E-72 547.5 27.3 283 329-622 2-288 (306)
18 KOG0559 Dihydrolipoamide succi 100.0 1.1E-66 2.4E-71 525.2 23.1 360 212-620 72-436 (457)
19 PF00198 2-oxoacid_dh: 2-oxoac 100.0 6.3E-56 1.4E-60 445.9 20.3 209 408-622 3-214 (231)
20 PRK12270 kgd alpha-ketoglutara 100.0 3.6E-47 7.8E-52 425.1 22.7 211 409-622 115-339 (1228)
21 PRK11854 aceF pyruvate dehydro 99.9 1.7E-26 3.7E-31 263.5 21.9 180 86-291 2-181 (633)
22 KOG0557 Dihydrolipoamide acety 99.9 1.5E-21 3.2E-26 206.2 11.3 94 83-176 35-128 (470)
23 COG0508 AceF Pyruvate/2-oxoglu 99.8 4.1E-20 8.9E-25 200.2 12.2 82 85-167 1-82 (404)
24 PLN02226 2-oxoglutarate dehydr 99.8 1.7E-18 3.6E-23 188.2 14.5 77 87-164 92-168 (463)
25 KOG0559 Dihydrolipoamide succi 99.7 2.3E-18 5.1E-23 175.4 7.2 81 84-165 70-150 (457)
26 PLN02744 dihydrolipoyllysine-r 99.7 1.8E-17 4E-22 183.6 14.4 92 74-166 99-192 (539)
27 PF00364 Biotin_lipoyl: Biotin 99.7 7.7E-18 1.7E-22 139.9 7.6 74 87-161 1-74 (74)
28 PTZ00144 dihydrolipoamide succ 99.7 4.1E-17 9E-22 176.2 13.4 82 84-166 42-123 (418)
29 PRK05704 dihydrolipoamide succ 99.7 9.1E-17 2E-21 174.4 12.7 81 85-166 1-81 (407)
30 PF00302 CAT: Chloramphenicol 99.7 1.5E-15 3.2E-20 150.3 16.0 173 430-622 23-200 (206)
31 TIGR01347 sucB 2-oxoglutarate 99.7 3.4E-16 7.3E-21 169.6 12.3 78 87-165 1-78 (403)
32 PRK14875 acetoin dehydrogenase 99.7 4.2E-16 9.2E-21 166.8 11.8 78 86-164 2-79 (371)
33 PF00364 Biotin_lipoyl: Biotin 99.6 3E-16 6.6E-21 130.3 7.5 74 213-287 1-74 (74)
34 PRK06748 hypothetical protein; 99.6 1.2E-15 2.6E-20 128.1 9.7 63 100-163 12-75 (83)
35 PRK14875 acetoin dehydrogenase 99.6 1.8E-15 3.8E-20 162.1 11.4 119 213-363 3-121 (371)
36 PRK13757 chloramphenicol acety 99.6 1.4E-14 2.9E-19 144.3 16.1 182 418-622 18-203 (219)
37 TIGR02927 SucB_Actino 2-oxoglu 99.6 2.4E-15 5.3E-20 170.5 11.3 82 84-166 133-214 (590)
38 PRK11892 pyruvate dehydrogenas 99.6 9.4E-15 2E-19 160.8 13.6 85 86-170 2-86 (464)
39 TIGR01348 PDHac_trf_long pyruv 99.6 1.8E-14 3.9E-19 162.2 12.2 79 86-166 116-194 (546)
40 PRK06748 hypothetical protein; 99.6 1.5E-14 3.3E-19 121.6 8.7 63 226-289 12-75 (83)
41 PLN02528 2-oxoisovalerate dehy 99.5 1.7E-14 3.8E-19 157.2 10.0 77 89-166 1-77 (416)
42 PRK05889 putative acetyl-CoA c 99.5 5.2E-14 1.1E-18 115.9 9.2 62 100-162 10-71 (71)
43 PRK11856 branched-chain alpha- 99.5 1.5E-13 3.2E-18 150.5 13.4 80 86-166 2-81 (411)
44 PRK11892 pyruvate dehydrogenas 99.5 8.3E-13 1.8E-17 145.5 18.4 82 213-294 3-84 (464)
45 PRK11855 dihydrolipoamide acet 99.5 1.4E-13 3E-18 155.7 12.4 79 85-165 118-196 (547)
46 cd06663 Biotinyl_lipoyl_domain 99.5 2.6E-13 5.7E-18 112.1 9.5 72 89-161 2-73 (73)
47 TIGR01349 PDHac_trf_mito pyruv 99.5 1.9E-13 4.1E-18 149.9 10.4 77 89-165 2-78 (435)
48 PRK08225 acetyl-CoA carboxylas 99.4 8.8E-13 1.9E-17 108.3 8.8 61 101-162 10-70 (70)
49 COG0511 AccB Biotin carboxyl c 99.4 1.4E-12 2.9E-17 121.7 9.6 70 212-288 70-139 (140)
50 COG0511 AccB Biotin carboxyl c 99.4 1.2E-12 2.5E-17 122.1 8.4 62 100-162 78-139 (140)
51 PRK05889 putative acetyl-CoA c 99.4 2.4E-12 5.1E-17 106.1 8.3 61 226-287 10-70 (71)
52 PRK06549 acetyl-CoA carboxylas 99.3 1.7E-11 3.6E-16 112.2 11.1 61 226-287 69-129 (130)
53 PRK06549 acetyl-CoA carboxylas 99.3 8.5E-12 1.8E-16 114.1 9.2 61 100-161 69-129 (130)
54 cd06663 Biotinyl_lipoyl_domain 99.3 1.1E-11 2.4E-16 102.4 8.6 72 215-287 2-73 (73)
55 PRK05641 putative acetyl-CoA c 99.3 6.9E-11 1.5E-15 111.3 13.8 61 226-287 92-152 (153)
56 PRK05641 putative acetyl-CoA c 99.2 2E-11 4.4E-16 114.9 8.9 61 100-161 92-152 (153)
57 PRK08225 acetyl-CoA carboxylas 99.2 2.3E-11 5.1E-16 99.8 7.9 61 226-287 9-69 (70)
58 PF02817 E3_binding: e3 bindin 99.2 4.9E-12 1.1E-16 91.0 3.4 37 329-365 3-39 (39)
59 COG4845 Chloramphenicol O-acet 99.2 1.3E-10 2.8E-15 111.4 14.0 169 430-621 26-201 (219)
60 PLN02983 biotin carboxyl carri 99.2 6.6E-11 1.4E-15 118.5 10.9 56 231-287 217-272 (274)
61 PRK07051 hypothetical protein; 99.2 5.9E-11 1.3E-15 100.1 8.8 61 101-162 12-79 (80)
62 cd06850 biotinyl_domain The bi 99.2 1E-10 2.2E-15 94.2 9.0 62 99-161 6-67 (67)
63 PLN02983 biotin carboxyl carri 99.2 6E-11 1.3E-15 118.7 8.6 62 100-162 205-273 (274)
64 TIGR00531 BCCP acetyl-CoA carb 99.2 7.2E-11 1.6E-15 112.0 8.1 60 101-161 89-155 (156)
65 KOG0558 Dihydrolipoamide trans 99.1 6.6E-11 1.4E-15 120.8 5.9 79 211-290 63-141 (474)
66 TIGR00531 BCCP acetyl-CoA carb 99.1 3.1E-10 6.8E-15 107.7 10.1 74 213-287 81-155 (156)
67 PRK06302 acetyl-CoA carboxylas 99.1 1.8E-10 4E-15 109.2 8.2 60 101-161 88-154 (155)
68 cd06849 lipoyl_domain Lipoyl d 99.1 7.5E-10 1.6E-14 89.3 10.7 73 88-161 2-74 (74)
69 PRK07051 hypothetical protein; 99.1 6.1E-10 1.3E-14 93.9 8.8 57 231-288 23-79 (80)
70 PRK14042 pyruvate carboxylase 99.0 5.7E-10 1.2E-14 126.0 9.7 63 100-163 533-595 (596)
71 PRK06302 acetyl-CoA carboxylas 99.0 1.8E-09 3.8E-14 102.5 9.7 74 213-287 80-154 (155)
72 cd06850 biotinyl_domain The bi 99.0 1.9E-09 4.1E-14 86.8 7.9 61 226-287 7-67 (67)
73 PRK14042 pyruvate carboxylase 98.9 9E-09 2E-13 116.4 14.8 62 226-288 533-594 (596)
74 TIGR02712 urea_carbox urea car 98.9 1.7E-09 3.7E-14 131.8 9.2 62 100-162 1140-1201(1201)
75 TIGR01108 oadA oxaloacetate de 98.9 4.2E-09 9.2E-14 119.4 8.1 58 100-158 525-582 (582)
76 PRK14040 oxaloacetate decarbox 98.9 6.1E-09 1.3E-13 118.2 9.3 61 100-161 532-592 (593)
77 cd06849 lipoyl_domain Lipoyl d 98.8 2.7E-08 5.9E-13 80.1 9.2 73 214-287 2-74 (74)
78 TIGR01235 pyruv_carbox pyruvat 98.8 1E-08 2.2E-13 124.0 8.9 67 94-162 1077-1143(1143)
79 TIGR01235 pyruv_carbox pyruvat 98.8 3.2E-08 6.9E-13 119.8 13.0 60 227-287 1083-1142(1143)
80 TIGR02712 urea_carbox urea car 98.7 1.7E-08 3.6E-13 123.3 8.2 61 226-287 1140-1200(1201)
81 PRK09282 pyruvate carboxylase 98.7 3.3E-08 7.1E-13 112.5 9.0 62 100-162 530-591 (592)
82 TIGR01108 oadA oxaloacetate de 98.7 2.3E-08 5.1E-13 113.4 6.8 58 226-284 525-582 (582)
83 PRK14040 oxaloacetate decarbox 98.7 4.7E-08 1E-12 111.0 8.2 61 226-287 532-592 (593)
84 PRK12999 pyruvate carboxylase; 98.6 1.1E-07 2.5E-12 115.5 9.0 62 100-162 1084-1145(1146)
85 COG4770 Acetyl/propionyl-CoA c 98.5 1.4E-07 3.1E-12 102.9 7.5 62 100-162 583-644 (645)
86 PRK09282 pyruvate carboxylase 98.5 2.5E-07 5.5E-12 105.3 8.1 62 226-288 530-591 (592)
87 COG1038 PycA Pyruvate carboxyl 98.4 7.3E-07 1.6E-11 100.3 10.2 61 227-288 1088-1148(1149)
88 COG4770 Acetyl/propionyl-CoA c 98.4 4.6E-07 1E-11 99.0 6.9 61 227-288 584-644 (645)
89 COG1038 PycA Pyruvate carboxyl 98.4 4.9E-07 1.1E-11 101.6 6.8 67 94-162 1082-1148(1149)
90 PRK12999 pyruvate carboxylase; 98.4 6.1E-07 1.3E-11 109.2 8.0 61 227-288 1085-1145(1146)
91 cd06848 GCS_H Glycine cleavage 98.2 2.4E-06 5.2E-11 74.6 6.0 63 87-150 16-79 (96)
92 KOG0369 Pyruvate carboxylase [ 98.1 6.3E-06 1.4E-10 91.1 7.3 67 94-162 1109-1175(1176)
93 cd06848 GCS_H Glycine cleavage 97.9 1.8E-05 4E-10 69.0 5.7 50 227-276 29-79 (96)
94 KOG0369 Pyruvate carboxylase [ 97.9 1.8E-05 3.8E-10 87.7 6.3 61 227-288 1115-1175(1176)
95 KOG0368 Acetyl-CoA carboxylase 97.8 2.6E-05 5.6E-10 92.6 7.1 68 98-167 691-758 (2196)
96 TIGR03077 not_gcvH glycine cle 97.8 2.5E-05 5.3E-10 69.8 5.3 50 101-150 30-80 (110)
97 KOG0238 3-Methylcrotonyl-CoA c 97.7 2.3E-05 5E-10 84.8 4.2 60 101-161 610-669 (670)
98 PRK00624 glycine cleavage syst 97.7 7E-05 1.5E-09 67.3 6.3 59 87-146 19-78 (114)
99 PRK13380 glycine cleavage syst 97.6 7.4E-05 1.6E-09 70.0 5.5 63 87-150 31-94 (144)
100 PRK09783 copper/silver efflux 97.6 0.00025 5.5E-09 77.9 9.3 68 99-167 130-246 (409)
101 TIGR00998 8a0101 efflux pump m 97.5 0.00021 4.5E-09 76.1 8.1 35 130-165 205-239 (334)
102 PRK10559 p-hydroxybenzoic acid 97.5 0.0002 4.4E-09 75.8 7.7 66 99-165 54-189 (310)
103 TIGR03077 not_gcvH glycine cle 97.5 0.00015 3.3E-09 64.8 5.5 48 227-274 30-78 (110)
104 PRK01202 glycine cleavage syst 97.4 0.0004 8.6E-09 63.8 7.4 62 101-163 37-106 (127)
105 PRK00624 glycine cleavage syst 97.4 0.00023 5E-09 64.0 5.6 44 227-270 32-76 (114)
106 TIGR01730 RND_mfp RND family e 97.4 0.00024 5.1E-09 74.8 6.6 67 99-166 33-170 (322)
107 KOG0238 3-Methylcrotonyl-CoA c 97.4 0.00013 2.7E-09 79.2 4.3 60 227-287 610-669 (670)
108 PRK10476 multidrug resistance 97.3 0.0005 1.1E-08 73.8 7.8 35 130-165 209-243 (346)
109 KOG0368 Acetyl-CoA carboxylase 97.3 0.00036 7.9E-09 83.3 6.9 64 226-291 693-756 (2196)
110 PRK13380 glycine cleavage syst 97.3 0.00034 7.3E-09 65.6 5.3 48 227-274 44-92 (144)
111 PRK12784 hypothetical protein; 97.3 0.0016 3.5E-08 53.3 8.0 65 99-164 12-77 (84)
112 PRK09578 periplasmic multidrug 97.2 0.00068 1.5E-08 73.9 7.5 72 93-166 65-209 (385)
113 TIGR00527 gcvH glycine cleavag 97.2 0.00049 1.1E-08 63.2 4.9 49 101-149 36-85 (127)
114 PRK03598 putative efflux pump 97.2 0.00079 1.7E-08 71.8 7.1 35 130-165 204-238 (331)
115 PRK15136 multidrug efflux syst 97.2 0.0009 2E-08 73.2 7.5 36 130-166 216-251 (390)
116 PF13533 Biotin_lipoyl_2: Biot 97.1 0.00077 1.7E-08 51.5 4.3 35 129-164 2-36 (50)
117 PF13533 Biotin_lipoyl_2: Biot 97.1 0.0006 1.3E-08 52.1 3.7 29 99-127 9-37 (50)
118 PRK09783 copper/silver efflux 97.1 0.0017 3.6E-08 71.5 8.6 65 226-291 131-244 (409)
119 PRK14843 dihydrolipoamide acet 97.1 0.00037 8E-09 74.8 3.2 40 330-369 7-46 (347)
120 TIGR00998 8a0101 efflux pump m 97.0 0.0015 3.3E-08 69.5 7.6 34 256-290 205-238 (334)
121 PRK15030 multidrug efflux syst 97.0 0.0017 3.8E-08 71.1 7.8 67 99-166 72-211 (397)
122 PRK09859 multidrug efflux syst 97.0 0.0017 3.7E-08 70.8 7.6 67 99-166 68-207 (385)
123 PRK01202 glycine cleavage syst 97.0 0.0022 4.8E-08 58.9 7.0 44 227-270 37-81 (127)
124 PRK10559 p-hydroxybenzoic acid 97.0 0.0017 3.6E-08 68.9 7.1 64 226-290 55-188 (310)
125 TIGR01730 RND_mfp RND family e 96.9 0.0016 3.5E-08 68.5 6.3 64 226-290 34-168 (322)
126 PRK11578 macrolide transporter 96.8 0.0025 5.5E-08 69.0 7.6 66 100-166 69-222 (370)
127 PRK10476 multidrug resistance 96.8 0.0026 5.6E-08 68.4 7.3 33 257-290 210-242 (346)
128 TIGR00527 gcvH glycine cleavag 96.8 0.0013 2.9E-08 60.3 4.2 45 227-271 36-81 (127)
129 PRK11556 multidrug efflux syst 96.8 0.0025 5.4E-08 70.3 7.0 65 99-164 94-231 (415)
130 PF01597 GCV_H: Glycine cleava 96.7 0.0032 7E-08 57.5 6.1 47 101-147 31-78 (122)
131 PF12700 HlyD_2: HlyD family s 96.7 0.0016 3.5E-08 68.7 4.4 66 99-166 28-195 (328)
132 PRK12784 hypothetical protein; 96.6 0.0083 1.8E-07 49.2 7.2 64 226-290 13-77 (84)
133 PRK15136 multidrug efflux syst 96.6 0.0045 9.8E-08 67.7 7.0 34 257-291 217-250 (390)
134 TIGR02971 heterocyst_DevB ABC 96.5 0.0071 1.5E-07 64.3 7.5 33 131-165 206-238 (327)
135 PRK03598 putative efflux pump 96.4 0.0058 1.3E-07 65.2 6.7 34 256-290 204-237 (331)
136 PRK09578 periplasmic multidrug 96.4 0.0069 1.5E-07 66.1 6.9 63 226-289 71-206 (385)
137 COG0509 GcvH Glycine cleavage 96.2 0.005 1.1E-07 56.2 4.1 61 87-148 26-87 (131)
138 PRK15030 multidrug efflux syst 96.1 0.011 2.4E-07 64.8 6.9 63 226-289 73-208 (397)
139 PF01597 GCV_H: Glycine cleava 96.1 0.011 2.4E-07 54.0 5.7 44 227-270 31-75 (122)
140 PRK09859 multidrug efflux syst 96.1 0.012 2.6E-07 64.3 6.9 63 226-289 69-204 (385)
141 TIGR03309 matur_yqeB selenium- 96.0 0.021 4.4E-07 58.2 7.7 59 100-165 172-230 (256)
142 PRK11578 macrolide transporter 95.8 0.021 4.5E-07 62.0 7.1 33 257-290 185-220 (370)
143 PRK11556 multidrug efflux syst 95.7 0.019 4E-07 63.4 6.5 63 226-289 95-230 (415)
144 COG0509 GcvH Glycine cleavage 95.4 0.016 3.4E-07 53.0 3.6 44 227-270 39-83 (131)
145 PF12700 HlyD_2: HlyD family s 95.4 0.015 3.2E-07 61.4 4.0 26 226-252 29-54 (328)
146 PF13375 RnfC_N: RnfC Barrel s 95.1 0.067 1.5E-06 47.1 6.8 47 101-148 39-85 (101)
147 TIGR00999 8a0102 Membrane Fusi 94.8 0.063 1.4E-06 55.0 6.7 35 130-165 89-123 (265)
148 TIGR03309 matur_yqeB selenium- 94.4 0.11 2.4E-06 53.0 7.1 55 229-289 174-228 (256)
149 KOG3373 Glycine cleavage syste 94.3 0.095 2.1E-06 49.3 5.8 45 106-150 83-130 (172)
150 cd06251 M14_ASTE_ASPA_like_1 A 93.9 0.19 4.1E-06 52.7 8.0 56 103-161 229-286 (287)
151 PF13375 RnfC_N: RnfC Barrel s 93.8 0.096 2.1E-06 46.2 4.7 43 227-270 39-81 (101)
152 PF05896 NQRA: Na(+)-transloca 93.6 0.097 2.1E-06 53.6 5.0 39 104-145 41-81 (257)
153 cd06253 M14_ASTE_ASPA_like_3 A 93.3 0.25 5.4E-06 52.1 7.6 58 101-161 237-297 (298)
154 cd06250 M14_PaAOTO_like An unc 93.2 0.24 5.2E-06 53.6 7.6 58 101-161 297-358 (359)
155 TIGR00999 8a0102 Membrane Fusi 93.0 0.17 3.6E-06 51.9 5.7 33 257-290 90-122 (265)
156 cd06252 M14_ASTE_ASPA_like_2 A 92.4 0.48 1.1E-05 50.4 8.4 59 101-162 252-314 (316)
157 cd06251 M14_ASTE_ASPA_like_1 A 92.2 0.4 8.7E-06 50.3 7.4 58 227-287 227-286 (287)
158 cd06253 M14_ASTE_ASPA_like_3 A 92.2 0.37 8E-06 50.8 7.1 58 227-287 237-297 (298)
159 TIGR02994 ectoine_eutE ectoine 92.2 0.4 8.6E-06 51.2 7.4 57 102-161 264-324 (325)
160 PF13437 HlyD_3: HlyD family s 92.0 0.22 4.7E-06 43.6 4.4 33 131-164 1-33 (105)
161 COG3608 Predicted deacylase [G 91.6 0.49 1.1E-05 50.2 7.1 61 99-162 262-325 (331)
162 COG3608 Predicted deacylase [G 91.5 0.55 1.2E-05 49.8 7.3 61 226-289 263-326 (331)
163 cd06250 M14_PaAOTO_like An unc 91.0 0.62 1.3E-05 50.5 7.4 59 226-287 296-358 (359)
164 cd06252 M14_ASTE_ASPA_like_2 A 90.6 0.82 1.8E-05 48.6 7.9 59 227-288 252-314 (316)
165 PF00529 HlyD: HlyD family sec 90.6 0.2 4.4E-06 52.1 3.2 35 130-165 2-36 (305)
166 PF09891 DUF2118: Uncharacteri 89.8 0.49 1.1E-05 44.6 4.7 48 99-146 87-135 (150)
167 PF05896 NQRA: Na(+)-transloca 89.5 0.38 8.2E-06 49.3 4.0 45 227-276 38-84 (257)
168 TIGR02994 ectoine_eutE ectoine 89.4 0.99 2.1E-05 48.2 7.3 58 227-287 263-324 (325)
169 cd06254 M14_ASTE_ASPA_like_4 A 89.4 0.83 1.8E-05 47.9 6.7 55 101-158 231-287 (288)
170 COG1726 NqrA Na+-transporting 89.3 0.41 9E-06 50.6 4.2 40 105-147 42-83 (447)
171 PF13437 HlyD_3: HlyD family s 89.3 0.56 1.2E-05 40.9 4.5 32 258-290 2-33 (105)
172 TIGR02971 heterocyst_DevB ABC 89.1 0.51 1.1E-05 50.1 4.9 42 122-164 6-50 (327)
173 PRK14844 bifunctional DNA-dire 87.6 2.1 4.4E-05 56.2 9.4 35 105-141 2423-2457(2836)
174 PF09891 DUF2118: Uncharacteri 87.4 1 2.2E-05 42.4 5.2 45 226-270 88-133 (150)
175 PF07831 PYNP_C: Pyrimidine nu 87.4 0.6 1.3E-05 38.9 3.2 24 104-127 34-57 (75)
176 TIGR01936 nqrA NADH:ubiquinone 86.7 0.67 1.4E-05 51.6 4.1 44 101-145 38-81 (447)
177 cd06254 M14_ASTE_ASPA_like_4 A 86.3 1.5 3.2E-05 46.1 6.2 55 227-284 231-287 (288)
178 TIGR01000 bacteriocin_acc bact 85.7 1.2 2.6E-05 49.8 5.5 35 129-164 59-93 (457)
179 TIGR01843 type_I_hlyD type I s 85.7 1.1 2.4E-05 48.9 5.2 43 122-165 36-78 (423)
180 PRK05352 Na(+)-translocating N 85.6 0.73 1.6E-05 51.3 3.7 44 101-145 39-82 (448)
181 TIGR03794 NHPM_micro_HlyD NHPM 85.2 1.2 2.6E-05 49.2 5.2 36 129-165 58-93 (421)
182 PF00529 HlyD: HlyD family sec 85.2 0.74 1.6E-05 47.8 3.4 33 256-289 2-34 (305)
183 PRK05305 phosphatidylserine de 84.8 15 0.00033 36.5 12.3 52 227-284 150-201 (206)
184 TIGR01936 nqrA NADH:ubiquinone 84.5 1.3 2.8E-05 49.4 4.9 45 226-271 37-81 (447)
185 TIGR01945 rnfC electron transp 84.3 1.1 2.3E-05 50.0 4.2 40 104-144 43-82 (435)
186 cd06255 M14_ASTE_ASPA_like_5 A 83.9 2.6 5.6E-05 44.4 6.7 43 101-143 239-283 (293)
187 PRK05352 Na(+)-translocating N 83.5 1.3 2.8E-05 49.4 4.5 43 227-270 39-81 (448)
188 PF07831 PYNP_C: Pyrimidine nu 83.0 1.2 2.6E-05 37.1 3.0 28 226-253 30-57 (75)
189 PF02749 QRPTase_N: Quinolinat 82.3 1.2 2.6E-05 38.1 2.9 25 101-126 45-69 (88)
190 TIGR01945 rnfC electron transp 80.5 1.7 3.6E-05 48.4 3.9 43 227-270 40-82 (435)
191 KOG3373 Glycine cleavage syste 80.4 1.2 2.7E-05 42.0 2.4 38 235-272 89-126 (172)
192 TIGR01000 bacteriocin_acc bact 79.9 2.8 6.1E-05 46.9 5.6 40 249-289 53-92 (457)
193 COG1726 NqrA Na+-transporting 79.6 1.8 4E-05 45.9 3.6 38 231-271 42-81 (447)
194 COG4656 RnfC Predicted NADH:ub 79.3 1.8 3.9E-05 48.4 3.6 38 105-144 46-83 (529)
195 COG0845 AcrA Membrane-fusion p 79.0 4.4 9.6E-05 42.4 6.5 46 117-164 55-100 (372)
196 TIGR03794 NHPM_micro_HlyD NHPM 78.9 3 6.4E-05 46.1 5.3 36 253-289 56-91 (421)
197 TIGR01843 type_I_hlyD type I s 78.8 2.9 6.3E-05 45.6 5.2 43 247-290 35-77 (423)
198 PF07247 AATase: Alcohol acety 78.0 44 0.00095 37.3 14.4 40 436-478 251-290 (480)
199 PRK05035 electron transport co 76.4 2.8 6.2E-05 49.3 4.4 40 104-144 49-88 (695)
200 TIGR02946 acyl_WS_DGAT acyltra 76.0 53 0.0011 36.2 14.2 90 436-540 231-331 (446)
201 cd06255 M14_ASTE_ASPA_like_5 A 75.5 6.5 0.00014 41.4 6.4 43 227-269 239-283 (293)
202 PF04952 AstE_AspA: Succinylgl 75.4 4.7 0.0001 42.0 5.4 58 102-162 229-290 (292)
203 TIGR00164 PS_decarb_rel phosph 75.2 5.2 0.00011 39.3 5.2 53 101-159 130-182 (189)
204 cd00210 PTS_IIA_glc PTS_IIA, P 74.9 2.7 5.9E-05 38.5 3.0 27 100-126 78-104 (124)
205 PRK05305 phosphatidylserine de 74.5 5.2 0.00011 39.8 5.2 52 101-158 150-201 (206)
206 PRK05035 electron transport co 74.3 5.9 0.00013 46.6 6.3 43 227-270 46-88 (695)
207 COG1566 EmrA Multidrug resista 74.1 4 8.7E-05 44.0 4.5 36 129-165 53-88 (352)
208 COG2190 NagE Phosphotransferas 74.1 6.7 0.00014 37.3 5.4 28 101-128 86-113 (156)
209 TIGR00830 PTBA PTS system, glu 74.0 2.1 4.7E-05 39.0 2.0 28 100-127 78-105 (121)
210 PF02749 QRPTase_N: Quinolinat 71.9 3.3 7.2E-05 35.3 2.7 26 227-252 44-69 (88)
211 COG4656 RnfC Predicted NADH:ub 71.3 3.7 7.9E-05 46.0 3.4 42 227-270 42-83 (529)
212 COG1566 EmrA Multidrug resista 70.5 4.6 9.9E-05 43.6 3.9 35 131-166 210-244 (352)
213 PRK09439 PTS system glucose-sp 69.7 8.4 0.00018 37.2 5.1 28 100-127 100-127 (169)
214 PRK09294 acyltransferase PapA5 69.7 69 0.0015 35.0 13.1 91 460-562 229-347 (416)
215 COG4072 Uncharacterized protei 68.2 11 0.00025 34.6 5.3 45 99-143 98-143 (161)
216 PF00358 PTS_EIIA_1: phosphoen 68.1 2.5 5.5E-05 39.1 1.2 29 100-128 82-110 (132)
217 PF04952 AstE_AspA: Succinylgl 66.6 14 0.00031 38.4 6.6 59 227-288 228-290 (292)
218 TIGR01995 PTS-II-ABC-beta PTS 65.7 7.6 0.00016 45.2 4.7 29 100-128 542-570 (610)
219 PRK09603 bifunctional DNA-dire 65.5 18 0.0004 48.2 8.3 20 267-287 2704-2723(2890)
220 PRK09439 PTS system glucose-sp 64.4 14 0.0003 35.8 5.4 21 267-288 104-124 (169)
221 COG0845 AcrA Membrane-fusion p 62.7 16 0.00035 38.1 6.3 43 245-289 57-99 (372)
222 COG2190 NagE Phosphotransferas 62.4 18 0.00038 34.5 5.6 28 227-254 86-113 (156)
223 COG4072 Uncharacterized protei 62.2 14 0.00031 34.0 4.7 44 226-269 99-143 (161)
224 PF02666 PS_Dcarbxylase: Phosp 60.7 12 0.00027 37.0 4.6 68 89-160 134-202 (202)
225 COG0157 NadC Nicotinate-nucleo 60.5 8.3 0.00018 40.1 3.3 24 103-126 65-88 (280)
226 PRK09824 PTS system beta-gluco 58.9 12 0.00025 43.7 4.6 28 100-127 558-585 (627)
227 TIGR00830 PTBA PTS system, glu 56.9 8 0.00017 35.3 2.3 27 227-253 79-105 (121)
228 cd00210 PTS_IIA_glc PTS_IIA, P 56.5 10 0.00023 34.7 3.0 28 226-253 78-105 (124)
229 TIGR00164 PS_decarb_rel phosph 55.2 22 0.00047 34.9 5.2 53 227-285 130-182 (189)
230 PF00358 PTS_EIIA_1: phosphoen 52.2 7.1 0.00015 36.2 1.1 28 226-253 82-109 (132)
231 PRK10255 PTS system N-acetyl g 51.1 20 0.00042 42.0 4.7 29 100-128 578-606 (648)
232 PRK03934 phosphatidylserine de 48.3 24 0.00051 36.7 4.4 55 102-161 211-265 (265)
233 PRK08072 nicotinate-nucleotide 47.7 19 0.0004 37.7 3.6 23 104-126 66-88 (277)
234 PRK02597 rpoC2 DNA-directed RN 46.0 51 0.0011 41.5 7.4 35 106-140 405-446 (1331)
235 TIGR02645 ARCH_P_rylase putati 45.8 33 0.00072 38.7 5.3 41 249-290 407-471 (493)
236 PRK06543 nicotinate-nucleotide 44.7 22 0.00048 37.2 3.5 23 104-126 67-89 (281)
237 PF02666 PS_Dcarbxylase: Phosp 44.2 33 0.00071 33.9 4.6 58 226-286 144-202 (202)
238 cd01134 V_A-ATPase_A V/A-type 43.7 50 0.0011 35.9 6.0 70 89-165 38-112 (369)
239 TIGR01995 PTS-II-ABC-beta PTS 43.7 32 0.00069 40.1 5.0 29 226-254 542-570 (610)
240 PRK03140 phosphatidylserine de 43.6 26 0.00056 36.2 3.9 51 108-160 207-257 (259)
241 cd01572 QPRTase Quinolinate ph 43.6 25 0.00054 36.5 3.8 26 101-126 57-82 (268)
242 PRK05742 nicotinate-nucleotide 43.3 24 0.00052 36.9 3.5 23 104-126 68-90 (277)
243 PRK06096 molybdenum transport 42.8 24 0.00052 37.0 3.5 22 104-125 63-84 (284)
244 TIGR02643 T_phosphoryl thymidi 42.1 20 0.00042 39.9 2.8 21 104-124 382-402 (437)
245 TIGR02645 ARCH_P_rylase putati 42.0 39 0.00084 38.2 5.1 41 123-164 407-471 (493)
246 PRK05820 deoA thymidine phosph 41.8 20 0.00043 39.9 2.8 23 103-125 382-404 (440)
247 cd01568 QPRTase_NadC Quinolina 41.4 27 0.00058 36.3 3.6 24 103-126 58-81 (269)
248 COG0157 NadC Nicotinate-nucleo 41.2 23 0.00049 36.9 2.9 25 228-252 64-88 (280)
249 PRK06078 pyrimidine-nucleoside 40.6 23 0.00049 39.4 3.0 27 101-127 375-401 (434)
250 PLN02716 nicotinate-nucleotide 40.4 28 0.00061 36.9 3.5 23 104-126 80-102 (308)
251 cd01573 modD_like ModD; Quinol 40.3 27 0.00059 36.3 3.4 23 104-126 58-80 (272)
252 PRK06978 nicotinate-nucleotide 40.2 28 0.0006 36.7 3.4 23 104-126 84-106 (294)
253 PRK07428 nicotinate-nucleotide 40.2 29 0.00063 36.5 3.6 23 104-126 74-96 (288)
254 TIGR01042 V-ATPase_V1_A V-type 39.9 53 0.0012 37.8 5.8 56 107-165 123-181 (591)
255 PRK09016 quinolinate phosphori 39.8 28 0.00061 36.7 3.4 23 104-126 87-109 (296)
256 PRK05848 nicotinate-nucleotide 39.4 29 0.00063 36.2 3.4 23 104-126 60-82 (273)
257 COG1155 NtpA Archaeal/vacuolar 39.2 68 0.0015 36.3 6.4 70 89-166 105-180 (588)
258 PRK06106 nicotinate-nucleotide 39.2 30 0.00065 36.2 3.5 24 103-126 71-94 (281)
259 PRK07896 nicotinate-nucleotide 38.5 31 0.00066 36.3 3.5 23 104-126 78-100 (289)
260 PRK09824 PTS system beta-gluco 37.0 47 0.001 38.8 5.0 28 227-254 559-586 (627)
261 TIGR02644 Y_phosphoryl pyrimid 36.8 31 0.00067 38.1 3.3 29 98-126 370-398 (405)
262 TIGR00163 PS_decarb phosphatid 36.7 30 0.00066 35.2 3.1 48 111-160 189-236 (238)
263 TIGR01334 modD putative molybd 36.5 37 0.00079 35.5 3.7 23 104-126 62-84 (277)
264 PRK08385 nicotinate-nucleotide 36.4 35 0.00075 35.7 3.5 23 104-126 60-82 (278)
265 PRK04350 thymidine phosphoryla 36.2 30 0.00064 39.1 3.1 29 97-125 434-462 (490)
266 PF03869 Arc: Arc-like DNA bin 35.3 1.1E+02 0.0025 23.2 5.3 48 430-482 2-49 (50)
267 TIGR00078 nadC nicotinate-nucl 35.1 38 0.00083 35.1 3.6 22 105-126 57-78 (265)
268 PRK14844 bifunctional DNA-dire 35.1 51 0.0011 44.2 5.2 21 231-251 2423-2443(2836)
269 PF01551 Peptidase_M23: Peptid 35.0 31 0.00068 29.3 2.5 23 103-125 52-74 (96)
270 TIGR03327 AMP_phos AMP phospho 35.0 30 0.00066 39.0 2.9 29 97-125 443-471 (500)
271 PRK04350 thymidine phosphoryla 34.3 60 0.0013 36.7 5.1 41 249-290 399-463 (490)
272 TIGR03327 AMP_phos AMP phospho 34.0 60 0.0013 36.8 5.0 40 250-290 409-472 (500)
273 PF01551 Peptidase_M23: Peptid 33.7 1.3E+02 0.0027 25.5 6.1 56 98-163 19-74 (96)
274 cd01572 QPRTase Quinolinate ph 32.7 38 0.00083 35.2 3.1 26 227-252 57-82 (268)
275 PRK08072 nicotinate-nucleotide 32.2 39 0.00086 35.3 3.1 23 230-252 66-88 (277)
276 TIGR02643 T_phosphoryl thymidi 32.1 65 0.0014 35.9 4.8 38 252-290 336-404 (437)
277 PRK06078 pyrimidine-nucleoside 30.3 38 0.00083 37.7 2.7 27 227-253 375-401 (434)
278 PRK06543 nicotinate-nucleotide 29.7 46 0.001 34.9 3.1 24 229-252 66-89 (281)
279 TIGR01043 ATP_syn_A_arch ATP s 29.7 97 0.0021 35.8 5.8 59 104-165 113-178 (578)
280 PRK08662 nicotinate phosphorib 28.8 53 0.0011 35.5 3.4 25 100-126 69-93 (343)
281 PRK03934 phosphatidylserine de 28.3 84 0.0018 32.6 4.7 56 227-287 210-265 (265)
282 PRK00044 psd phosphatidylserin 28.0 55 0.0012 34.3 3.4 58 102-162 224-286 (288)
283 PRK06096 molybdenum transport 27.9 51 0.0011 34.6 3.0 24 228-251 61-84 (284)
284 PRK05820 deoA thymidine phosph 27.8 47 0.001 37.1 2.9 25 227-251 380-404 (440)
285 TIGR02644 Y_phosphoryl pyrimid 27.5 49 0.0011 36.5 2.9 27 226-252 372-398 (405)
286 PRK05742 nicotinate-nucleotide 27.3 54 0.0012 34.3 3.1 23 230-252 68-90 (277)
287 PRK09016 quinolinate phosphori 26.8 54 0.0012 34.6 3.0 24 229-252 86-109 (296)
288 PRK04192 V-type ATP synthase s 26.7 1.3E+02 0.0028 34.9 6.2 57 107-166 123-182 (586)
289 PLN02716 nicotinate-nucleotide 26.2 58 0.0012 34.6 3.1 24 228-251 78-101 (308)
290 PRK10255 PTS system N-acetyl g 26.2 99 0.0021 36.3 5.2 28 227-254 579-606 (648)
291 PRK06978 nicotinate-nucleotide 26.2 57 0.0012 34.4 3.0 23 229-251 83-105 (294)
292 cd01573 modD_like ModD; Quinol 26.1 57 0.0012 34.0 3.0 25 228-252 56-80 (272)
293 cd06910 M14_ASTE_ASPA_like_7 A 26.0 1E+02 0.0023 31.9 5.0 45 108-160 226-271 (272)
294 PRK07428 nicotinate-nucleotide 25.9 59 0.0013 34.2 3.1 24 229-252 73-96 (288)
295 PRK06559 nicotinate-nucleotide 25.9 66 0.0014 33.9 3.4 24 103-126 72-97 (290)
296 cd01568 QPRTase_NadC Quinolina 25.8 59 0.0013 33.7 3.1 26 227-252 56-81 (269)
297 PRK06106 nicotinate-nucleotide 25.4 61 0.0013 34.0 3.0 24 228-251 70-93 (281)
298 PRK05848 nicotinate-nucleotide 25.1 61 0.0013 33.8 3.0 23 229-251 59-81 (273)
299 PRK07896 nicotinate-nucleotide 24.5 64 0.0014 34.0 3.0 24 229-252 77-100 (289)
300 CHL00117 rpoC2 RNA polymerase 24.5 81 0.0018 40.1 4.3 35 106-140 406-448 (1364)
301 PF06898 YqfD: Putative stage 24.4 95 0.0021 34.0 4.5 52 226-285 167-225 (385)
302 KOG1668 Elongation factor 1 be 24.3 45 0.00097 33.7 1.7 27 105-131 181-207 (231)
303 PRK03140 phosphatidylserine de 24.2 78 0.0017 32.7 3.6 56 227-286 202-257 (259)
304 TIGR01042 V-ATPase_V1_A V-type 23.9 1.4E+02 0.0031 34.4 5.8 54 233-289 123-179 (591)
305 cd01134 V_A-ATPase_A V/A-type 23.9 1.5E+02 0.0033 32.2 5.8 54 233-289 54-110 (369)
306 TIGR02388 rpoC2_cyan DNA-direc 23.6 1.6E+02 0.0034 37.1 6.4 35 106-140 405-446 (1227)
307 COG0213 DeoA Thymidine phospho 23.1 1.2E+02 0.0027 33.4 4.9 42 248-290 329-401 (435)
308 PRK08385 nicotinate-nucleotide 22.9 71 0.0015 33.4 3.0 25 228-252 58-82 (278)
309 TIGR01334 modD putative molybd 22.9 74 0.0016 33.3 3.1 25 228-252 60-84 (277)
310 TIGR00078 nadC nicotinate-nucl 22.9 73 0.0016 33.0 3.1 22 230-251 56-77 (265)
311 COG1155 NtpA Archaeal/vacuolar 22.6 1.7E+02 0.0038 33.2 6.0 56 234-291 122-179 (588)
312 PRK07188 nicotinate phosphorib 21.9 97 0.0021 33.6 3.8 24 103-126 72-95 (352)
313 PHA01513 mnt Mnt 21.7 1.3E+02 0.0028 25.6 3.7 44 430-478 3-46 (82)
314 PRK14698 V-type ATP synthase s 21.6 2E+02 0.0044 35.7 6.8 70 88-166 106-182 (1017)
315 COG4908 Uncharacterized protei 20.3 2.8E+02 0.006 30.7 6.8 64 460-536 238-318 (439)
No 1
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=100.00 E-value=1.6e-102 Score=876.78 Aligned_cols=531 Identities=28% Similarity=0.409 Sum_probs=401.9
Q ss_pred ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995 86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (622)
Q Consensus 86 ~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~ 165 (622)
.+.|+||++|++|+||+|++|+|++||.|++||+||+|||||++++|+|+.+|+|.++++++||. |++|++|+.|...+
T Consensus 2 ~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~-v~vG~~ia~i~~~~ 80 (590)
T TIGR02927 2 AFSVEMPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDT-VDIGGEIAIIGEAG 80 (590)
T ss_pred CeeEECCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCE-EeeeeeEEEEeecc
Confidence 36799999999999999999999999999999999999999999999999999999999999999 99999999997644
Q ss_pred cccccccccccCCcccccccccccc--cch-hhhcc--ccccc---cCCCCCCCceeeecCCCCCCcccceeeEeeeCCC
Q 006995 166 DDIQHIPATIAGGAEAKEQSSTHQD--VKK-EAVQE--TSASR---INTSELPPRVVLEMPALSPTMNQGNIAKWRKNEG 237 (622)
Q Consensus 166 ~~~~~~~~~~~~~~~~a~~~~~~~~--~~p-a~~a~--a~s~~---~~~~~~~~~~~~~~P~l~~~~~eg~i~~w~v~~G 237 (622)
+...............+...+...+ ..+ ...+. ..++. .+........++.||++|++|++|+|++|+|++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~P~lg~~~~eg~i~~w~v~~G 160 (590)
T TIGR02927 81 EASAEAGAEDSAAAAEPEEAPAEEAPKEEPKAAPAESVEQAPAESSAPSQGGGAATDIEMPELGESVTEGTITQWLKAVG 160 (590)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccCCCceEEEcCCCCCCcceEEEEEEEeCCC
Confidence 3221111100000000000000000 000 00000 00000 0011112246899999999999999999999999
Q ss_pred CeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCCCCcCCc-C--CCC-C-------CCcc
Q 006995 238 DKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTV-K--NSV-T-------SGAE 306 (622)
Q Consensus 238 d~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~~~~~~~-~--~~~-~-------~~~~ 306 (622)
|.|++||+||+|||||++++|+|+++|+|.+|++++|+. |++|++|++|.+++++.... . ... + ..+.
T Consensus 161 d~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~-v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (590)
T TIGR02927 161 DKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDT-VDVGAEIAKIGDAGAAAAEDAKAEEEAEAKAEAKPEEKPD 239 (590)
T ss_pred CEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCE-ecCCCEEEEEecCCCccccccccccccccccccccCCCCc
Confidence 999999999999999999999999999999999999998 99999999997544332110 0 000 0 0000
Q ss_pred cCCC-C--CCC---C----CCcccc---c--cccCCCccCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhcCC
Q 006995 307 VKGE-K--ETH---H----DSKDVV---K--VQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGK 371 (622)
Q Consensus 307 ~~~~-~--~~~---~----~~~~~~---~--~~~~~~~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~~~ 371 (622)
.... . ..+ . .....+ . ......+++||+||+||+|+||||++|+|||++|||+|+||++|+....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~GtG~~GrI~k~DV~~~~~~~~ 319 (590)
T TIGR02927 240 PKKDEAAEPEPDEPEAEKAEKKEEKAAAAPAANSDGSPYVTPLVRKLAAEHGIDLNSVKGTGIGGRIRKQDVLAAAEGAK 319 (590)
T ss_pred cccccccccccccccccccccccccccccccccccCcccCCchhHHHHHHcCCCHHHCCCCCCCCeEeHHHHHHHHhccc
Confidence 0000 0 000 0 000000 0 0011235689999999999999999999999999999999999975321
Q ss_pred CccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHH
Q 006995 372 VSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRK 451 (622)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk 451 (622)
... .+++...+.....+...+ ...+ .+.. ....++++|+++|||.|+++|++||+++||||++.+||+|+|+++|+
T Consensus 320 ~~~-~~~~~~~~~~~~~~~~~~-~~~~-~~~~-~~~~~~~~pls~~rk~ia~~m~~S~~~iPh~~~~~evdvt~l~~~R~ 395 (590)
T TIGR02927 320 AAA-EAPAAEAAAAAPAAAAAA-SASP-APAK-AHLRGTTQKANRIREITAKKTREALQASAQLTQLHEVDMTKIAALRA 395 (590)
T ss_pred ccc-ccccccccccCccccccc-cCCC-cccc-ccccCceeeccHHHHHHHHHHHHHhccCCeEEEEeEEEcHHHHHHHH
Confidence 100 000000000000000000 0000 0000 00124578999999999999999999999999999999999999999
Q ss_pred HHhh----hCCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHH
Q 006995 452 ELKE----KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAIS 527 (622)
Q Consensus 452 ~~k~----~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia 527 (622)
++|. ++|.|+||++||+||+++||++||.||++|+++.++|++|++|||||||++++||++|||||+++|||.+|+
T Consensus 396 ~l~~~~~~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~t~~GL~vPvIk~a~~~sl~~ia 475 (590)
T TIGR02927 396 RAKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVNASYNADTKEITYHAAEHLGFAVDTDAGLLSPVIHNAGDLSLGEIA 475 (590)
T ss_pred HHHhhhHHhcCCcccHHHHHHHHHHHHHHhCCHhheEEecCCCEEEEeCCccEEEEEECCCCcEecccCCcccCCHHHHH
Confidence 9974 247899999999999999999999999999866557999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccceeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEE
Q 006995 528 MEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLT 607 (622)
Q Consensus 528 ~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~ls 607 (622)
+++++|++|+|+|+|+++||+|||||||||||||+++|+||||+||+||||+|++.++|+++++.+|.+.+++|++|+||
T Consensus 476 ~~i~~l~~kAr~gkL~p~e~~GgTfTISNlG~~G~~~~tpIIn~PqvaILgvG~i~~~pv~~~~~~g~~~~~~~~~m~ls 555 (590)
T TIGR02927 476 KAIADIAARARNGKLKPDDLAGGTFTITNIGSEGALFDTPILIPPQAAILGTGAIVKRPRVITDEDGIDSIAIRQMCHLP 555 (590)
T ss_pred HHHHHHHHHHHcCCCChHHhCCCeEEEECCCCCCccceeceecCCCeEEEEcccceEEEEEeccCCCcccEEEEeeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999887433443359999999999
Q ss_pred EEeecccccCccCCC
Q 006995 608 LSADHRVFEGKVGGT 622 (622)
Q Consensus 608 lt~DHRvvDGa~aa~ 622 (622)
||||||||||+++|+
T Consensus 556 ls~DHRviDGa~aa~ 570 (590)
T TIGR02927 556 LTYDHQLIDGADAGR 570 (590)
T ss_pred eeccchhcCcHHHHH
Confidence 999999999999875
No 2
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=100.00 E-value=8.3e-97 Score=824.70 Aligned_cols=510 Identities=25% Similarity=0.366 Sum_probs=393.6
Q ss_pred EEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCCcc
Q 006995 88 VVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADD 167 (622)
Q Consensus 88 ~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~~~ 167 (622)
+|+||+||+. .+|+|++|+|++||.|++||+||+||+||+.++|.|+.+|+|.++++++||. |.+|++|+.|+..+..
T Consensus 2 ~i~~p~lg~~-~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~-V~~G~~La~i~~~~~~ 79 (546)
T TIGR01348 2 EIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDT-LPVGGVIATLEVGAGA 79 (546)
T ss_pred ceecCCCCCC-CceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCE-EeccceEEEEeccccc
Confidence 5899999987 9999999999999999999999999999999999999999999999999999 9999999999643321
Q ss_pred cccccccccCCcccccccccccccchhhhcc-ccccccCCCCCCCceeeecCCCCCCcccceeeEeeeCCCCeeecCCee
Q 006995 168 IQHIPATIAGGAEAKEQSSTHQDVKKEAVQE-TSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVI 246 (622)
Q Consensus 168 ~~~~~~~~~~~~~~a~~~~~~~~~~pa~~a~-a~s~~~~~~~~~~~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l 246 (622)
.... .......+.... ..+...+. ...+.. .......++.||++|+ |++|+|++|+|++||.|++||+|
T Consensus 80 ~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~--~~~~~~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l 149 (546)
T TIGR01348 80 QAQA-EAKKEAAPAPTA------GAPAPAAQAQAAPAA--GQSSGVQEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSL 149 (546)
T ss_pred cccc-cccccccccccc------ccccccccccccccc--cccCCceEEeCCCCCC-cceeEEeEEeeCCCCcccCCCee
Confidence 1100 000000000000 00000000 000000 0001136999999999 99999999999999999999999
Q ss_pred EEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCCCCcCCcCCCCC-----CCcccCCCCC--CCCCCcc
Q 006995 247 CEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVT-----SGAEVKGEKE--THHDSKD 319 (622)
Q Consensus 247 ~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~~ 319 (622)
|+|||||++++|++|++|+|.++++++|+. |++|++|+.|..++++....+.... ..+.+..+.+ .+....+
T Consensus 150 ~~vetdK~~~ei~a~~~G~v~~i~v~~G~~-v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (546)
T TIGR01348 150 ITLESDKASMEVPAPASGVVKSVKVKVGDS-VPTGDLILTLSVAGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAAKA 228 (546)
T ss_pred EEEEecceeeEecCCCCcEEEEEecCCCCE-ecCCCEEEEEecCCCCcccccCcccccccCCCCccccccccCCCCCCCc
Confidence 999999999999999999999999999998 9999999999754432111100000 0000000000 0000000
Q ss_pred -ccc-----cccCCCc-cCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhcCCCccccCCCCCCCCCCCCCCCC
Q 006995 320 -VVK-----VQKGSFT-KISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTS 392 (622)
Q Consensus 320 -~~~-----~~~~~~~-~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (622)
.+. ....... ++||+||+||+||||||++|+|||++|||+++||++|+....... +.. ..+++... ...
T Consensus 229 ~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~-~~~--~~~~~~~~-~~~ 304 (546)
T TIGR01348 229 QAPAPQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKGTGIKGRILREDVQRFVKEPSVRA-QAA--AASAAGGA-PGA 304 (546)
T ss_pred cCcccccccccccccccCCCHHHHHHHHHcCCCHhhCCCCCCCCeEeHHHHHHHhhcccccc-Ccc--cccccCCc-ccc
Confidence 000 0011123 589999999999999999999999999999999999974321000 000 00000000 000
Q ss_pred CCCCCCCCCCccCCCCceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhh---hCCCCccHHHHHHH
Q 006995 393 TAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE---KHNTKVSVNDIVIK 469 (622)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~---~~g~k~t~~~~iik 469 (622)
+ +. +.........++++|+++|||.|+++|++|++++||||++.++|+|+|+++|+++|. +.|.|+||++||+|
T Consensus 305 ~--~~-~~~~~~~~~~~~~v~~s~~rk~ia~~m~~S~~~iPh~~~~~evdvt~l~~~r~~l~~~~~~~g~kls~~~~l~k 381 (546)
T TIGR01348 305 L--PW-PNVDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHFDKADITEMEAFRKQQNAAVEKEGVKLTVLHILMK 381 (546)
T ss_pred C--CC-ccccccccCcceeeecchHHHHHHHHHHHHhhcCCEEEEEEEEEcHHHHHHHHHHHhhhhhcCCcccHHHHHHH
Confidence 0 00 000001111246789999999999999999999999999999999999999999984 35789999999999
Q ss_pred HHHHHHhhccccceeecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCC
Q 006995 470 AVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQG 549 (622)
Q Consensus 470 Ava~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~g 549 (622)
|+++||++||.||++|+++.+.|+++++|||||||++++||++|||||+++|||.+|++++++|++++|+|+|+++||+|
T Consensus 382 A~~~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~ar~g~L~~~d~~g 461 (546)
T TIGR01348 382 AVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVDTPNGLLVPVIKDVDRKGITELALELSDLAKKARDGKLTPDEMQG 461 (546)
T ss_pred HHHHHHHhCChhhEEEeCCCCEEEEeCCcCEEEEEECCCCeEECCcCCcccCCHHHHHHHHHHHHHHHhcCCCCHHHhCC
Confidence 99999999999999998654569999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCccceeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995 550 GTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT 622 (622)
Q Consensus 550 gtftISNlG~~G~~~~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~ 622 (622)
|||||||+||||+++|+||||+||+||||+|++.++|++.++ +++++++|+||||||||||||+++|+
T Consensus 462 gTfTiSNlG~~G~~~~~piin~Pq~aIl~vg~~~~~p~~~~~-----~~~~~~~m~ltls~DHRviDGa~aa~ 529 (546)
T TIGR01348 462 ACFTISSLGGIGGTAFTPIVNAPEVAILGVSKSGMEPVWNGK-----EFEPRLMLPLSLSYDHRVIDGADAAR 529 (546)
T ss_pred CeEEEeCCCCCCCcceECCCCCCceEEEEcccceEEeEEECC-----EEEEEEEEEEeEeccchhcChHHHHH
Confidence 999999999999999999999999999999999999987544 79999999999999999999999874
No 3
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=100.00 E-value=3.1e-92 Score=801.72 Aligned_cols=501 Identities=23% Similarity=0.328 Sum_probs=394.2
Q ss_pred CcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEc
Q 006995 84 PSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE 163 (622)
Q Consensus 84 ~~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~ 163 (622)
.+++.++||++| ++||+|++|+|++||.|++||+||++|+||+.++|.||++|+|.++++++|+. |..|++|+.|..
T Consensus 103 ~~~~~i~lp~~g--~~eg~v~~~~v~~Gd~V~~g~~l~~vEa~K~~~~I~Ap~~G~V~~i~v~~G~~-V~~G~~l~~i~~ 179 (633)
T PRK11854 103 AAAKDVHVPDIG--SDEVEVTEILVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDK-VSTGSLIMVFEV 179 (633)
T ss_pred CCceEEecccCC--CCCceEeEEEeCCCCEECCCCEeeeeehhhceeEEeCCCCEEEEEEEecCCCE-EcCCcEeeEEec
Confidence 456789999999 89999999999999999999999999999999999999999999999999999 999999999976
Q ss_pred CCcccccccccccCCcccccccccccccchhhhccccccccCCCCCCCceeeecCCCCCCcccceeeEeeeCCCCeeecC
Q 006995 164 DADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVG 243 (622)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pa~~a~a~s~~~~~~~~~~~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~g 243 (622)
.+.... ..+ . .+ . ...+ ...+. ......++.||++| |++|+|++|+|++||.|++|
T Consensus 180 ~~~~~~----~~~-~---~~-~----~~~~-----~~~~~----~a~~~~~~~~p~lg--~~eg~v~~w~v~~Gd~V~~g 235 (633)
T PRK11854 180 AGEAPA----AAP-A---AA-E----AAAP-----AAAPA----AAAGVKDVNVPDIG--GDEVEVTEVMVKVGDKVEAE 235 (633)
T ss_pred cccccc----ccc-c---cc-c----cccc-----ccccc----ccCCceEEecCCCc--ccceEEEEEEecCCCeecCC
Confidence 443211 000 0 00 0 0000 00000 01234689999999 99999999999999999999
Q ss_pred CeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCCCCcCCcCCCC-CCCcccCC-CCCCCCCCc--c
Q 006995 244 DVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSV-TSGAEVKG-EKETHHDSK--D 319 (622)
Q Consensus 244 d~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~--~ 319 (622)
|+||+|||||++++|+||++|+|.+|++++|+. |++|++|+.|.+++++....+.+. ...+.+.. ..+.+...+ .
T Consensus 236 ~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~-v~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (633)
T PRK11854 236 QSLITVEGDKASMEVPAPFAGTVKEIKVNVGDK-VKTGSLIMRFEVEGAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAK 314 (633)
T ss_pred CceEEEEecceeeEeeCCCCeEEEEEecCCCCE-ecCCCEEEEEecCCCCccccccccCCCCCCccccccCCCCCCCccc
Confidence 999999999999999999999999999999999 999999999975443211111100 00000000 000000000 0
Q ss_pred ccc----cccCCCccCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhcCCCccccCCCCCCCCCCCCCCCCCCC
Q 006995 320 VVK----VQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAV 395 (622)
Q Consensus 320 ~~~----~~~~~~~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (622)
.+. .......++||+||+||++|||||++|+||||+|||+++||++|+.........+++ ++ ......+..
T Consensus 315 ~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~---~~--~~~~~~~~~ 389 (633)
T PRK11854 315 AEGKSEFAENDAYVHATPLVRRLAREFGVNLAKVKGTGRKGRILKEDVQAYVKDAVKRAEAAPA---AA--AAGGGGPGL 389 (633)
T ss_pred ccccccccccCCccCCCchhHHHHHHhCCChhhcCCCCCCCeEeHHHHHHHhhccccccccCCc---cc--ccccccccc
Confidence 000 011123568999999999999999999999999999999999997532110000000 00 000000000
Q ss_pred CCCCCCCccCCCCceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhh-----hCCCCccHHHHHHHH
Q 006995 396 SPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE-----KHNTKVSVNDIVIKA 470 (622)
Q Consensus 396 ~~~~~~~~~~~~~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~-----~~g~k~t~~~~iikA 470 (622)
...+..........+++||++|||.|+++|.+||+++||||++.++|+|+|+++|++++. +.|.|+||++||+||
T Consensus 390 ~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~~ip~~~~~~evD~t~l~~~rk~~~~~~~~~~~g~k~t~~~~likA 469 (633)
T PRK11854 390 LPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHVTQFDKADITELEAFRKQQNAEAEKRKLGVKITPLVFIMKA 469 (633)
T ss_pred cccccccccccCcceEEeCchHHHHHHHHHHHHHhcCCeEEEEeEEEcHHHHHHHHHHhhhhhhhcccCcccHHHHHHHH
Confidence 000000001111245689999999999999999999999999999999999999998762 348899999999999
Q ss_pred HHHHHhhccccceeecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCC
Q 006995 471 VAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGG 550 (622)
Q Consensus 471 va~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~gg 550 (622)
+++||++||+||++|+++.++|++|+++||||||++++||++||||++++++|.+|++++++|++++|+|+|+++|++||
T Consensus 470 va~Al~~~P~~Na~~~~~~~~i~~~~~vnigiAV~~~~GL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~~~l~~~~~~gg 549 (633)
T PRK11854 470 VAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAVDTPNGLVVPVFKDVNKKGIIELSRELMDISKKARDGKLTAGDMQGG 549 (633)
T ss_pred HHHHHHhCCHhhEEEecCCCEEEEecccCEEEEEECCCceEEeeECCCccCCHHHHHHHHHHHHHHHHcCCCChHHcCCc
Confidence 99999999999999975445699999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCccceeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995 551 TFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT 622 (622)
Q Consensus 551 tftISNlG~~G~~~~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~ 622 (622)
||||||+||||+++|+|||||||+|||++|++.++|++.++ .+.+|++|+|||+||||||||+++|+
T Consensus 550 TftISnlG~~G~~~~tpii~ppq~aIlgvG~i~~~p~~~~~-----~~~~r~~m~lslt~DHRviDGa~aa~ 616 (633)
T PRK11854 550 CFTISSIGGLGTTHFTPIVNAPEVAILGVSKSAMEPVWNGK-----EFAPRLMLPLSLSYDHRVIDGADGAR 616 (633)
T ss_pred EEEEeCCcccCCcceeccccCCceEEEEcccceEEEEEECC-----EEEEEEEEEEeEEccchhcchHHHHH
Confidence 99999999999999999999999999999999999877543 79999999999999999999999874
No 4
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=5.6e-91 Score=781.45 Aligned_cols=517 Identities=26% Similarity=0.369 Sum_probs=393.5
Q ss_pred ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995 86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (622)
Q Consensus 86 ~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~ 165 (622)
.+.++||++|+ |++|+|++|+|++||.|++||+||+||+||+.++|.|+.+|+|.++++++|+. |.+|++|+.|++.+
T Consensus 2 ~~~i~~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~-V~~G~~L~~i~~~~ 79 (547)
T PRK11855 2 AIEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDT-VSVGGLLAVIEAAG 79 (547)
T ss_pred CceeecCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCE-ecCCceeeEecccc
Confidence 46799999999 99999999999999999999999999999999999999999999999999999 99999999996544
Q ss_pred cccccccccccCCcccccccccccccchhhhccccccccCCCCCCCceeeecCCCCCCcccceeeEeeeCCCCeeecCCe
Q 006995 166 DDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDV 245 (622)
Q Consensus 166 ~~~~~~~~~~~~~~~~a~~~~~~~~~~pa~~a~a~s~~~~~~~~~~~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~ 245 (622)
........+........+. ..+...++...... ........++.||++|+ |++|+|++|+|++||.|++||.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~ 151 (547)
T PRK11855 80 AAAAAAAPAAAAAPAAAAA------AAPAPAAAAPAAAA-AAAGGGVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQS 151 (547)
T ss_pred ccccccccccccccccccc------cccccccccccccc-CcccCCceEEecCCCCC-cceeEEeEEEeCCCCeecCCCe
Confidence 3111100000000000000 00000000000000 00011236899999999 9999999999999999999999
Q ss_pred eEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCCCCcCCcCCCCCCCcc-c-CC-CCCCCCCC--ccc
Q 006995 246 ICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVTSGAE-V-KG-EKETHHDS--KDV 320 (622)
Q Consensus 246 l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~~~~~~~~~~~~~~~~-~-~~-~~~~~~~~--~~~ 320 (622)
|++||+||+.++|+||++|+|.++++++|+. |++|++|+.+.+.+++...........+. . .. +.+.+... +..
T Consensus 152 l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~-v~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (547)
T PRK11855 152 LITVETDKATMEIPSPVAGVVKEIKVKVGDK-VSVGSLLVVIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAA 230 (547)
T ss_pred eEEEEecceeEEecCCCCeEEEEEecCCCCE-ecCCCEEEEEecCCCccccccCCCCCCCccccccCCCCCCcccccCCc
Confidence 9999999999999999999999999999999 99999999997653321010000000000 0 00 00000000 000
Q ss_pred c--c-cccCCCc-cCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhcCCCccccCCCCCCCCCCCCCCCCCCCC
Q 006995 321 V--K-VQKGSFT-KISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVS 396 (622)
Q Consensus 321 ~--~-~~~~~~~-~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (622)
. . ....... ++||+||+||+||||||++|+|||++|||+++||++|+....... ..++ .++........+...
T Consensus 231 ~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~ 307 (547)
T PRK11855 231 AAPAAAAAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGRITKEDVQAFVKGAMSAA-AAAA--AAAAAAGGGGLGLLP 307 (547)
T ss_pred cccccccccCCcccCChHHHHHHHHhCCCHHHCcCCCCCCcEeHHHHHHHhhcccccc-cccc--ccccccccccccccC
Confidence 0 0 0011223 689999999999999999999999999999999999975321110 0000 000000000000000
Q ss_pred CCCCCCccCCCCceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhh---hCCCCccHHHHHHHHHHH
Q 006995 397 PGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE---KHNTKVSVNDIVIKAVAV 473 (622)
Q Consensus 397 ~~~~~~~~~~~~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~---~~g~k~t~~~~iikAva~ 473 (622)
.+. .........+++|+++|||.|+++|++||+++||||++.++|+|+|+++|++++. +.|.|+||++||+||+++
T Consensus 308 ~~~-~~~~~~~~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~~~~~~~~~g~k~s~~~~likAv~~ 386 (547)
T PRK11855 308 WPK-VDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDEADITDLEALRKQLKKEAEKAGVKLTMLPFFIKAVVA 386 (547)
T ss_pred Ccc-ccccccCcceEEeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEChHHHHHHHHhhhhhhhcCCCCCHHHHHHHHHHH
Confidence 000 0000111245689999999999999999999999999999999999999999873 357899999999999999
Q ss_pred HHhhccccceeecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEE
Q 006995 474 ALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFS 553 (622)
Q Consensus 474 Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtft 553 (622)
||++||+||++|+++.+.|++|+++||||||++++||++|+|+|+++++|.+|++++++|++++|+|+|.++|++|||||
T Consensus 387 al~~~P~ln~~~~~~~~~i~~~~~i~i~~Av~~~~gl~vpvi~~~~~~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggtft 466 (547)
T PRK11855 387 ALKEFPVFNASLDEDGDELTYKKYFNIGFAVDTPNGLVVPVIKDVDKKSLLEIAREIAELAKKARDGKLKPDDMQGGCFT 466 (547)
T ss_pred HHHhCcHhhEEEccCCCEEEEeCCccEEEEEECCCccEeCCcCCCccCCHHHHHHHHHHHHHHHHcCCCChHhcCCceEE
Confidence 99999999999986435699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCccceeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995 554 ISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT 622 (622)
Q Consensus 554 ISNlG~~G~~~~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~ 622 (622)
|||+||||+++|+|+|||||+|||++|++.++|++.++ .+.++.+|+|||+||||||||+++|+
T Consensus 467 iSnlg~~g~~~~tpii~~pq~ail~~G~~~~~pv~~~~-----~~~~r~~m~lslt~DHRviDG~~aa~ 530 (547)
T PRK11855 467 ISSLGGIGGTAFTPIINAPEVAILGVGKSQMKPVWDGK-----EFVPRLMLPLSLSYDHRVIDGATAAR 530 (547)
T ss_pred EeCCccccccceecCcCCCceEEEEcccceEeeeeeCC-----EEEEEeEEEEeEEccchhcCcHHHHH
Confidence 99999999999999999999999999999999855332 68999999999999999999999874
No 5
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=100.00 E-value=2.7e-84 Score=699.23 Aligned_cols=382 Identities=36% Similarity=0.524 Sum_probs=317.2
Q ss_pred eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCCC
Q 006995 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG 292 (622)
Q Consensus 213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~~ 292 (622)
.++.||++|++|++|+|++|+|++||.|++||+||+|||||++++|+||.+|+|.++++++|+. |++|++|++|.++++
T Consensus 3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~-V~~G~~l~~i~~~~~ 81 (407)
T PRK05704 3 VEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDT-VTVGQVLGRIDEGAA 81 (407)
T ss_pred eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCE-eCCCCEEEEEecCCc
Confidence 4789999999999999999999999999999999999999999999999999999999999998 999999999975543
Q ss_pred CcCCcCCCCCCCcccCCCCCCCCCCccccccccCCCccCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhcCCC
Q 006995 293 DVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKV 372 (622)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~~~~ 372 (622)
+.+..+.+...++ +.+.+....+.+. .......+||+||+||+|+||||++|+|||++|||+++||++|+.....
T Consensus 82 ~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~ 156 (407)
T PRK05704 82 AGAAAAAAAAAAA----AAAAPAQAQAAAA-AEQSNDALSPAARKLAAENGLDASAVKGTGKGGRVTKEDVLAALAAAAA 156 (407)
T ss_pred ccccCCCCCCCCC----CCCCCCCCCCCcc-CCCccccCCchhhhHHhhcCCChhhCCCCCCCCcccHHHHHHHhhcccc
Confidence 2221111000000 0000000001111 1112346899999999999999999999999999999999999742110
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHH
Q 006995 373 SSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKE 452 (622)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~ 452 (622)
.. .+ ++ .. ...+ .+. .. .....+.+|+++|||.|+++|++||+++||||++.++|+|+|+++|++
T Consensus 157 ~~--~~----~~-~~--~~~~---~~~-~~--~~~~~~~vpls~~rk~ia~~m~~S~~~iPh~~~~~evd~~~l~~~r~~ 221 (407)
T PRK05704 157 AP--AA----PA-AA--APAA---APA-PL--GARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRKQ 221 (407)
T ss_pred cC--CC----CC-CC--CCcC---CCc-cc--cCCcceEeeChHHHHHHHHHHHHHhhcCCeEEEEEEEeHHHHHHHHHH
Confidence 00 00 00 00 0000 000 00 011135689999999999999999999999999999999999999999
Q ss_pred Hhh----hCCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHH
Q 006995 453 LKE----KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISM 528 (622)
Q Consensus 453 ~k~----~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~ 528 (622)
+|. +.|.|+||++||+||+++||++||.||++|+++. +++++++||||||++++||++|||||++++||.||++
T Consensus 222 ~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~--i~~~~~~nIgiAv~~~~GLivPVI~~a~~~sl~eIa~ 299 (407)
T PRK05704 222 YKDAFEKKHGVKLGFMSFFVKAVVEALKRYPEVNASIDGDD--IVYHNYYDIGIAVGTPRGLVVPVLRDADQLSFAEIEK 299 (407)
T ss_pred HHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhhcEEcCCe--EEEcCCCCeEEEEECCCceEeCcCCCcccCCHHHHHH
Confidence 973 2478999999999999999999999999998764 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccceeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEE
Q 006995 529 EVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTL 608 (622)
Q Consensus 529 ~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lsl 608 (622)
++++|++++|+|+|+++|++||||||||+||||+.+|+|||||||+||||+|++.++|++.+| +++++++|+|||
T Consensus 300 ~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~tpiIn~pq~aILgvG~i~~~pv~~~g-----~i~~r~~~~lsl 374 (407)
T PRK05704 300 KIAELAKKARDGKLSIEELTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHKIKERPVAVNG-----QIVIRPMMYLAL 374 (407)
T ss_pred HHHHHHHHHHcCCCChHHcCCceEEEecCCcccccceeccccCCcEEEEEcccceEEeEEECC-----EEEEEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999988755 799999999999
Q ss_pred EeecccccCccCCC
Q 006995 609 SADHRVFEGKVGGT 622 (622)
Q Consensus 609 t~DHRvvDGa~aa~ 622 (622)
|||||||||++||+
T Consensus 375 s~DHRviDGa~aa~ 388 (407)
T PRK05704 375 SYDHRIIDGKEAVG 388 (407)
T ss_pred EechhhhCcHHHHH
Confidence 99999999999874
No 6
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=100.00 E-value=1.1e-83 Score=692.98 Aligned_cols=380 Identities=34% Similarity=0.503 Sum_probs=316.3
Q ss_pred eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCCC
Q 006995 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG 292 (622)
Q Consensus 213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~~ 292 (622)
+++.||++|++|++|+|++|+|++||.|++||+|++|||||++++|+|+.+|+|.+|++++|+. |++|++|++|.++++
T Consensus 1 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~-v~vG~~l~~i~~~~~ 79 (403)
T TIGR01347 1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDT-VESGQVLAILEEGND 79 (403)
T ss_pred CeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCE-eCCCCEEEEEecCCC
Confidence 3689999999999999999999999999999999999999999999999999999999999998 999999999975432
Q ss_pred CcCCcCCCCCCCcccCCCCCCCCCCccccccccCCCccCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhcCCC
Q 006995 293 DVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKV 372 (622)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~~~~ 372 (622)
..+ .... ...+.. . ...+....+.+. .......+||+||+||+|+||||++|+|||++|||+++||++|+.....
T Consensus 80 ~~~-~~~~-~~~~~~-~-~~~~~~~~~~~~-~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~ 154 (403)
T TIGR01347 80 ATA-APPA-KSGEEK-E-ETPAASAAAAPT-AAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGRVTKEDIIKKTEAPAS 154 (403)
T ss_pred Ccc-cccc-cccCCC-C-CCCCCCCCCCCc-CccccccCCchhhhHHHHcCCChhhCCCCCCCCcccHHHHHHhhhcccc
Confidence 111 0000 000000 0 000000011111 1112346899999999999999999999999999999999999742110
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHH
Q 006995 373 SSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKE 452 (622)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~ 452 (622)
.. .+ .. +.+.+ .+... . ...+.+|+++|||+|+++|++||+++||||++.++|+|+|+++|++
T Consensus 155 ~~--~~------~~--~~~~~---~~~~~---~-~~~~~~pls~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~ 217 (403)
T TIGR01347 155 AQ--AP------AP--AAAAK---APANF---T-RPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMELRKR 217 (403)
T ss_pred cC--CC------CC--CcccC---Ccccc---C-CCceEeeCcHHHHHHHHHHHHHhccCCEEEEEEEEEHHHHHHHHHH
Confidence 00 00 00 00000 00000 0 1235689999999999999999999999999999999999999999
Q ss_pred Hhh----hCCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHH
Q 006995 453 LKE----KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISM 528 (622)
Q Consensus 453 ~k~----~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~ 528 (622)
+|. +.|.|+||++||+||+++||++||.||++|++++ |++++++||||||++++||++||||++++|||.+|++
T Consensus 218 ~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~--i~~~~~vnIgvAv~~~~GL~vPVIr~ad~~sl~eIa~ 295 (403)
T TIGR01347 218 YKEEFEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEIDGDD--IVYKDYYDISVAVSTDRGLVVPVVRNADRMSFADIEK 295 (403)
T ss_pred HHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhheEEcCCE--EEEcCCCCeEEEEECCCCeEECcCCCcccCCHHHHHH
Confidence 873 3478999999999999999999999999998754 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccceeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEE
Q 006995 529 EVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTL 608 (622)
Q Consensus 529 ~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lsl 608 (622)
++++|++++|+|+|+++|++||||||||+||||+.+|+|||||||+||||+|++.++|++.+| ++++|++|+|||
T Consensus 296 ~~~~l~~~ar~gkL~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aILgvG~i~~~pv~~~g-----~i~~r~~m~lsL 370 (403)
T TIGR01347 296 EIADLGKKARDGKLTLEDMTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHGIKERPVAVNG-----QIEIRPMMYLAL 370 (403)
T ss_pred HHHHHHHHHHcCCCChhhcCCceEEEecCCcCcccceeccccCCceEEEecccceEEEEEECC-----eEEEEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999988754 799999999999
Q ss_pred EeecccccCccCCC
Q 006995 609 SADHRVFEGKVGGT 622 (622)
Q Consensus 609 t~DHRvvDGa~aa~ 622 (622)
|||||||||++||+
T Consensus 371 t~DHRviDGa~aa~ 384 (403)
T TIGR01347 371 SYDHRLIDGKEAVT 384 (403)
T ss_pred EecchhhChHHHHH
Confidence 99999999999874
No 7
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=100.00 E-value=2.1e-83 Score=704.95 Aligned_cols=390 Identities=45% Similarity=0.744 Sum_probs=320.0
Q ss_pred CCCCCceeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCC-eecccCCeEE
Q 006995 207 SELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGS-KDVAVGQPIA 285 (622)
Q Consensus 207 ~~~~~~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~-~~v~vG~~l~ 285 (622)
+..+++.++.||++|++|++|+|++|+|++||.|++||+||+|||||++++++++.+|+|.+|++++|+ . |++|++|+
T Consensus 107 ~~~~~~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~-v~vG~~ia 185 (539)
T PLN02744 107 SDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKE-IKVGEVIA 185 (539)
T ss_pred ccCCCCceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcc-cCCCCEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999999996 6 99999999
Q ss_pred EEecCCCCcCCcC--------CCCCCCc--ccCCCC-C---CCCCCcc--ccc--c--ccCCCccCChhHHhHHHHcCCC
Q 006995 286 ITVEDPGDVGTVK--------NSVTSGA--EVKGEK-E---THHDSKD--VVK--V--QKGSFTKISPSAKLLILEHGLD 345 (622)
Q Consensus 286 ~i~~~~~~~~~~~--------~~~~~~~--~~~~~~-~---~~~~~~~--~~~--~--~~~~~~~asP~aR~lA~e~giD 345 (622)
++.+++++.+.+. ....+++ .+..+. + .+...+. .+. . .....+++||+||+||+|+|||
T Consensus 186 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ASP~aRrLAre~GVD 265 (539)
T PLN02744 186 ITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIFASPLARKLAEDNNVP 265 (539)
T ss_pred EEccCccccccccccccccccccccccccCCCCCcccccccCCCCCcccccccccccccccccccCCchhHHHHHHcCCC
Confidence 9865444321110 0000000 000000 0 0000000 000 0 0112346899999999999999
Q ss_pred cccccccCCCCeeechhhHHHHhcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceeecCchHhHHHHHHh
Q 006995 346 ASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRL 425 (622)
Q Consensus 346 ls~v~gtGp~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rk~ia~~m 425 (622)
|+.|+||||+|||+++||++|+....... + . + .+.+ . . .+. ..++++|+++|||.|+++|
T Consensus 266 Ls~V~GTGp~GRI~k~DV~a~~~~~~~~~----~--~---~---~~~~-----~-~-~~~-~~~~~vpls~~Rk~IA~~m 325 (539)
T PLN02744 266 LSSIKGTGPDGRIVKADIEDYLASGGKGA----T--A---P---PSTD-----S-K-APA-LDYTDIPNTQIRKVTASRL 325 (539)
T ss_pred HHHCCCCCCCCcccHHHHHHHhhcccccc----C--C---C---CCcc-----c-C-CCC-CccccccchhHHHHHHHHH
Confidence 99999999999999999999974211000 0 0 0 0000 0 0 000 0245689999999999999
Q ss_pred hhccCCcceEEEEeeeechHHHHHHHHHhh----hCCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCCccEE
Q 006995 426 LESKQNTPHLYLSSDVVLDPLLSFRKELKE----KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDIS 501 (622)
Q Consensus 426 ~~S~~~iP~~~~~~evdvt~l~~~rk~~k~----~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~vnig 501 (622)
++||+++||||++.++|+|+|+++|+++|. ..|.|+||++||+||+++||++||+||++|+++. |+++++||||
T Consensus 326 ~~S~~~iPh~t~~~evdvt~L~~lR~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~~~~~--i~~~~~vnIg 403 (539)
T PLN02744 326 LQSKQTIPHYYLTVDTRVDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWTDDY--IRQYHNVNIN 403 (539)
T ss_pred HHHHhhCCeEEEEEEEEcHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHhheeeccCc--EEEeCCcceE
Confidence 999999999999999999999999999973 2378999999999999999999999999998764 9999999999
Q ss_pred EEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCC-CCCccceeeecCCCceEEEEec
Q 006995 502 IAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLG-MFPVDQFCAIINPPQAGILAVG 580 (622)
Q Consensus 502 iAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG-~~G~~~~tpii~~pq~ail~vG 580 (622)
|||++++||++|||+|+++|+|.||++++++|.+++|+|+|+++||+||||||||+| |||+.+|+|||||||+||||+|
T Consensus 404 vAV~t~~GL~vPVIr~ad~~sl~eIa~ei~~L~~kAr~~kL~~~dl~GGTfTISNlGg~~G~~~ftpIInpPqvaILgvG 483 (539)
T PLN02744 404 VAVQTENGLYVPVVKDADKKGLSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSNLGGPFGIKQFCAIINPPQSAILAVG 483 (539)
T ss_pred EEEECCCCeEECcCCCcccCCHHHHHHHHHHHHHHHHcCCCChhhcCCceEEEeCCCcccccceeeccccCCcEEEEEcc
Confidence 999999999999999999999999999999999999999999999999999999998 8999999999999999999999
Q ss_pred cceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995 581 RGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT 622 (622)
Q Consensus 581 ~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~ 622 (622)
++.++|++.+ .+| +++++++|+||||||||||||++||+
T Consensus 484 ~i~~~pvv~~-~~g--~i~~r~~m~lsLs~DHRvIDGa~AA~ 522 (539)
T PLN02744 484 SAEKRVIPGS-GPD--QYNFASFMSVTLSCDHRVIDGAIGAE 522 (539)
T ss_pred cceeEeEEec-cCC--eEEEeeeeEEeEecchhhhCcHHHHH
Confidence 9999987742 233 79999999999999999999999874
No 8
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=100.00 E-value=5.7e-83 Score=668.45 Aligned_cols=399 Identities=50% Similarity=0.751 Sum_probs=334.7
Q ss_pred CCCceeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEe
Q 006995 209 LPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV 288 (622)
Q Consensus 209 ~~~~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~ 288 (622)
.+.|..|.||.|++||++|+|++|.++|||.+++||+||||||||++|++|.+++|||++|+++||..+|+||.+||+|+
T Consensus 35 ~p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiiv 114 (470)
T KOG0557|consen 35 LPAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIV 114 (470)
T ss_pred CCcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEe
Confidence 68899999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred cCCCCcCCcCCCCC------CCcccCC-CCCCCC---CCccc--------ccccc-CCCccCChhHHhHHHHcCCCcccc
Q 006995 289 EDPGDVGTVKNSVT------SGAEVKG-EKETHH---DSKDV--------VKVQK-GSFTKISPSAKLLILEHGLDASSL 349 (622)
Q Consensus 289 ~~~~~~~~~~~~~~------~~~~~~~-~~~~~~---~~~~~--------~~~~~-~~~~~asP~aR~lA~e~giDls~v 349 (622)
+++++++++..... ..+.+++ +++++. +.+.+ +.... ....++||++|+||.|+|||++.|
T Consensus 115 e~e~di~~~k~~k~~~s~~~~~~~~~~~~app~~~~~~~Ps~~~~~~~~~p~~~~~~~r~~asP~Ak~la~e~~l~ls~i 194 (470)
T KOG0557|consen 115 EDEDDIAAFKLPKDEASSGEQSPSAAPPPAPPKVAKPEAPSAPSKPSTSQPVKAKNGGRVFASPLAKKLAEEKGLELSSI 194 (470)
T ss_pred cccccHHHhhccccccccccCCcccCCCCCCCcccccCCCCCCccccccccCCcCCCCceecChHHHHHHHHhCCccccC
Confidence 99998877642111 1111111 111100 01100 10011 224569999999999999999999
Q ss_pred cccCCCCeeechhhHHHHhcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceeecCchHhHHHHHHhhhcc
Q 006995 350 QASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESK 429 (622)
Q Consensus 350 ~gtGp~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rk~ia~~m~~S~ 429 (622)
.||||+|||++.||++|+..+.......+ ++..+..++ +++.. ....|+++|+++||+.|+++|.+|+
T Consensus 195 ~gtGP~Gri~k~Di~~~v~~~~~k~~~~~------~~~~~~~~~-----~a~~~-~~~~~~diP~s~mr~viakrl~eSk 262 (470)
T KOG0557|consen 195 PGTGPHGRILKGDIEKHVGSGKKKSAKAP------KASAPPPAP-----AAPPV-SLPGYEDIPVSNMRRVIAKRLLESK 262 (470)
T ss_pred cCcCCCceeehhhHHHhhcccccccccCC------CccCCCcCc-----cCCcC-CCCcccccccchhhhhhhhhhhhhh
Confidence 99999999999999999875431111000 000001111 11111 1123999999999999999999999
Q ss_pred CCcceEEEEeeeechHHHHHHHHHh-hhCCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCCccEEEEEecCC
Q 006995 430 QNTPHLYLSSDVVLDPLLSFRKELK-EKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEK 508 (622)
Q Consensus 430 ~~iP~~~~~~evdvt~l~~~rk~~k-~~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~ 508 (622)
++|||+|++.++++++|+++|+++| ++.+.++|+++||+||++.||+++|++|++|+++ ..|+++++|||++||++++
T Consensus 263 ~~IPh~yvt~~~~~d~ll~~r~~ln~~~~~~~vsvndliiKAaa~al~~vPevNs~w~~~-~~i~~~~~VdisvAVat~~ 341 (470)
T KOG0557|consen 263 QTIPHYYVTVDVNLDKLLALREKLNFEKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDE-LVIRQLSSVDISVAVATPN 341 (470)
T ss_pred cCCCeEEEeeeeehHHHHHHHHHhhhcccCcccchhHHHHHHHHHHHhcCCcccceecCC-ccccccCcCChhheeeccC
Confidence 9999999999999999999999998 5567899999999999999999999999999986 5699999999999999999
Q ss_pred CeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccceeeecCCCceEEEEeccceeEEEE
Q 006995 509 GLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEP 588 (622)
Q Consensus 509 GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~~tpii~~pq~ail~vG~~~~~~~~ 588 (622)
||++|+|+|++.+.+.+|.+++.+|+.++|.|+|.|+||+|||||||||||||++.|++||||||.|||++|...+..++
T Consensus 342 GLitPii~na~~kgl~~is~~vkel~~kAr~~kL~Pee~qgGtftiSNLGmf~V~~F~AiinPpq~~ILavg~~~~~~v~ 421 (470)
T KOG0557|consen 342 GLITPIIQNADAKGLSTISSKVKELAQKAREGKLQPEEFQGGTFTLSNLGMFGVDMFTAIINPPQADILAVGAATPSVVP 421 (470)
T ss_pred cccchhhhhcccccHHHHHHHHHHHHHHHhhccCCcccccCCceeHhhccCcCccccccccCCchhhhhhcccCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred eeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995 589 VIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT 622 (622)
Q Consensus 589 ~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~ 622 (622)
. .++.+++.....|+|||++|||++||+.|||
T Consensus 422 d--~~~~~~~~~~~~m~VTls~DhRvvdga~aa~ 453 (470)
T KOG0557|consen 422 D--ANGPEKFSVINAMTVTLSADHRVVDGAVAAR 453 (470)
T ss_pred C--CCcccccceeeeeEEEEecCcceecHHHHHH
Confidence 3 3344479999999999999999999998874
No 9
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=100.00 E-value=3.9e-81 Score=677.00 Aligned_cols=393 Identities=24% Similarity=0.364 Sum_probs=314.9
Q ss_pred eecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCCCCc
Q 006995 215 LEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDV 294 (622)
Q Consensus 215 ~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~~~~ 294 (622)
+.||++|++|++|+|++|+|++||.|++||+|+++||||+.++++++.+|+|.++++++|+. |++|++|+.|..++++.
T Consensus 1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~-v~vG~~l~~i~~~~~~~ 79 (416)
T PLN02528 1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDI-VKVGETLLKIMVEDSQH 79 (416)
T ss_pred CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCE-eCCCCEEEEEeccCCcc
Confidence 47899999999999999999999999999999999999999999999999999999999998 99999999986443322
Q ss_pred CCcCCCCCCCcccCCCCCCCCCCccccccccCCCccCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhcCCCcc
Q 006995 295 GTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSS 374 (622)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~~~~~~ 374 (622)
..... ...+... .+.+....+..........++||+||+||+++||||++|+|||++|||+++||++|+.......
T Consensus 80 ~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~ 155 (416)
T PLN02528 80 LRSDS--LLLPTDS--SNIVSLAESDERGSNLSGVLSTPAVRHLAKQYGIDLNDILGTGKDGRVLKEDVLKYAAQKGVVK 155 (416)
T ss_pred ccccC--CCCCCCC--ccCCCCCCCCccccccCCccCChHHHHHHHHhCCCHHHCCCCCCCCcEeHHHHHHHhhcccccc
Confidence 11000 0000000 0000000000001111224689999999999999999999999999999999999975321100
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHh
Q 006995 375 RISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELK 454 (622)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k 454 (622)
.++++ ..+. .+...+.+..+..+. ......+.+|+++|||.|+++|++|+ ++||||++.+||+|+|+++|++++
T Consensus 156 ~~~~~-~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~r~~ia~~m~~S~-~ip~~~~~~eid~~~l~~~r~~~~ 229 (416)
T PLN02528 156 DSSSA-EEAT---IAEQEEFSTSVSTPT-EQSYEDKTIPLRGFQRAMVKTMTAAA-KVPHFHYVEEINVDALVELKASFQ 229 (416)
T ss_pred ccccc-cccc---CCccccccccCCCcc-cccCcceeeccchHHHHHHHHHHhcC-cCCeEEEEEEEEhHHHHHHHHHHh
Confidence 00000 0000 000000000000000 00011356899999999999999996 999999999999999999999997
Q ss_pred h---hCCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHH
Q 006995 455 E---KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVK 531 (622)
Q Consensus 455 ~---~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~ 531 (622)
. ..|.|+||++||+||+++||++||.||++|+++++.|++|+++||||||++++||++||||+++++||.+|+++++
T Consensus 230 ~~~~~~g~kls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~~vnIgiAv~~~~GL~vPvi~~a~~~sl~eI~~~~~ 309 (416)
T PLN02528 230 ENNTDPTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVPNIKNVQSLSLLEITKELS 309 (416)
T ss_pred hhhhhcCCcccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeCCCCeEEEEeCCCCeEecccCCcccCCHHHHHHHHH
Confidence 3 3588999999999999999999999999998765569999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCccCCCcEEEEeCCCCCccceeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEee
Q 006995 532 ELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSAD 611 (622)
Q Consensus 532 ~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~D 611 (622)
+|++++|+|+|+++||+||||||||+||||+++|+|||||||+||||+|++.++|++.+ +| ++++|++|+||||||
T Consensus 310 ~l~~~ar~gkL~~~dl~ggTftiSNlG~~G~~~~tpIin~pq~aIlgvG~i~~~pv~~~--~g--~i~~r~~m~lslt~D 385 (416)
T PLN02528 310 RLQHLAAENKLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEVAIIALGRIQKVPRFVD--DG--NVYPASIMTVTIGAD 385 (416)
T ss_pred HHHHHHHcCCCCHHHhCCceEEEeCCccccCCceECcccCCceEEEEcccceEEeEEeC--CC--cEEEEeEEEEeEecc
Confidence 99999999999999999999999999999999999999999999999999999988763 23 799999999999999
Q ss_pred cccccCccCCC
Q 006995 612 HRVFEGKVGGT 622 (622)
Q Consensus 612 HRvvDGa~aa~ 622 (622)
||||||++||+
T Consensus 386 HRviDGa~aa~ 396 (416)
T PLN02528 386 HRVLDGATVAR 396 (416)
T ss_pred chhcCcHHHHH
Confidence 99999999874
No 10
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=100.00 E-value=2.9e-81 Score=681.57 Aligned_cols=393 Identities=50% Similarity=0.722 Sum_probs=316.5
Q ss_pred eeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCCCC
Q 006995 214 VLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGD 293 (622)
Q Consensus 214 ~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~~~ 293 (622)
++.||++|++|++|+|.+|+|++||.|+.||+||+|||||++++|+|+.+|+|.+|++++|+..|++|++|++|.+++++
T Consensus 1 ~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~~~ 80 (435)
T TIGR01349 1 KITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEKED 80 (435)
T ss_pred CcccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccCCc
Confidence 36899999999999999999999999999999999999999999999999999999999998559999999999654333
Q ss_pred cC-CcCC-----C-CCCCccc---C-C---CCC--CCCCCcccc---cc----ccCCCccCChhHHhHHHHcCCCccccc
Q 006995 294 VG-TVKN-----S-VTSGAEV---K-G---EKE--THHDSKDVV---KV----QKGSFTKISPSAKLLILEHGLDASSLQ 350 (622)
Q Consensus 294 ~~-~~~~-----~-~~~~~~~---~-~---~~~--~~~~~~~~~---~~----~~~~~~~asP~aR~lA~e~giDls~v~ 350 (622)
.+ ..+. . ....+.. . + +.+ .+....+.+ .. .....+++||+||+||+||||||++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vR~lA~e~gvdl~~v~ 160 (435)
T TIGR01349 81 VADAFKNYKLESSASAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVA 160 (435)
T ss_pred cccccccccccccccCCCCcccccCCCCcCCCCCCCccccccccccccccccccccccccCCHHHHHHHHHcCCCHhHCC
Confidence 21 1000 0 0000000 0 0 000 000000000 00 011134689999999999999999999
Q ss_pred ccCCCCeeechhhHHHHhcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceeecCchHhHHHHHHhhhccC
Q 006995 351 ASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQ 430 (622)
Q Consensus 351 gtGp~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rk~ia~~m~~S~~ 430 (622)
|||++|||+++||++|+.... ...+.+ ++ ...+.......+. .....+.+||++|||.|+++|++||+
T Consensus 161 gtG~~GrI~~~DV~~~~~~~~-~~~~~~-----~~----~~~~~~~~~~~~~--~~~~~~~v~ls~~rk~ia~~m~~S~~ 228 (435)
T TIGR01349 161 GSGPNGRIVKKDIESFVPQSP-ASANFQ-----AA----ATTPATKKAAAPV--STGSYEDVPLSNIRKIIAKRLLESKQ 228 (435)
T ss_pred CCCCCCceeHHHHHHHHhccc-ccCCCc-----cc----cccccccccCCCc--cCCcceeecccHHHHHHHHHHHHHHh
Confidence 999999999999999975311 000000 00 0000000000000 11124668999999999999999999
Q ss_pred CcceEEEEeeeechHHHHHHHHHhhh--CCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCCccEEEEEecCC
Q 006995 431 NTPHLYLSSDVVLDPLLSFRKELKEK--HNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEK 508 (622)
Q Consensus 431 ~iP~~~~~~evdvt~l~~~rk~~k~~--~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~ 508 (622)
++||||++.++|+|+|+++|++++.. .|.|+||++||+||+++||++||.||++|+++. |++|++|||||||++++
T Consensus 229 ~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~klt~~~~l~kA~a~AL~~~P~~Na~~~~~~--i~~~~~vnigvAv~~~~ 306 (435)
T TIGR01349 229 TIPHYYVSIECNVDKLLALRKELNAMASEVYKLSVNDFIIKASALALREVPEANSSWTDNF--IRRYKNVDISVAVATPD 306 (435)
T ss_pred hCCeEEEEEEEEhHHHHHHHHHHHhhhhcCCcccHHHHHHHHHHHHHHhCcHhheEEeCCe--EEEeCCeeEEEEEECCC
Confidence 99999999999999999999999843 278999999999999999999999999998754 99999999999999999
Q ss_pred CeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccceeeecCCCceEEEEeccceeEEEE
Q 006995 509 GLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEP 588 (622)
Q Consensus 509 GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~~tpii~~pq~ail~vG~~~~~~~~ 588 (622)
||++|||||+++|||.||++++++|++++|+|+|+++||+||||||||+||||+++|+|||||||+||||+|++.++|++
T Consensus 307 GL~vPvi~~a~~~sl~eia~~i~~l~~~ar~~~L~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aIlgvG~i~~~pv~ 386 (435)
T TIGR01349 307 GLITPIVRNADAKGLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLGMFGIKDFTAIINPPQACILAVGAVEDVAVV 386 (435)
T ss_pred CeEECCCCCcccCCHHHHHHHHHHHHHHHhcCCCChhhcCCCeEEEecCCccCccceECccCCCceEEEEcccceEEeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred eeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995 589 VIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT 622 (622)
Q Consensus 589 ~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~ 622 (622)
++|.++ .++++++|+||||||||||||++||+
T Consensus 387 ~~~~~~--~i~~~~~m~lsls~DHRviDGa~aa~ 418 (435)
T TIGR01349 387 DNDEEK--GFAVASIMSVTLSCDHRVIDGAVGAE 418 (435)
T ss_pred eCCccc--eeEEeeeEEEeEeecchhhCcHHHHH
Confidence 765222 49999999999999999999999874
No 11
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=1.1e-78 Score=655.17 Aligned_cols=381 Identities=40% Similarity=0.593 Sum_probs=321.2
Q ss_pred eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCCC
Q 006995 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG 292 (622)
Q Consensus 213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~~ 292 (622)
.+|+||+||++|+||+|++|+||+||+|++||+|+||||||+++||+||++|+|.+|++++|++ |++|++|++|.++++
T Consensus 3 ~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~-V~Vg~~I~~i~~~~~ 81 (404)
T COG0508 3 IEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDT-VPVGAVIARIEEEGA 81 (404)
T ss_pred ceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCE-EcCCCeEEEEecCCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999 999999999987665
Q ss_pred CcCCcCCCCCCCcccCCCCCCCCCCccccccccCCCccCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhcCCC
Q 006995 293 DVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKV 372 (622)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~~~~ 372 (622)
+.++.... ...+ ..+.++..+............+||++|+||+|+|||++++.|||++|||+++|++.++....
T Consensus 82 ~~~a~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~asP~~r~la~e~gidl~~v~gtG~~gri~~~d~~~~~~~~~- 155 (404)
T COG0508 82 DAPAAAEA-PPEP----AAAAPASAPATAASAAAGRVLASPAVRRLAREAGIDLSKVKGTGPGGRITKKDVEAAVAEKA- 155 (404)
T ss_pred cccccCcc-cCCc----cccCcCcccCccccccccccccCcchhhhhhhcCCCHHHcCCcCCCCceeccchhhhccccc-
Confidence 43111100 0000 00000000000000011345799999999999999999999999999999999999876430
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHH
Q 006995 373 SSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKE 452 (622)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~ 452 (622)
.. +. ...+ ++ +.+ ......++++|++++||.|+.+|.+|++++||+|.+.++|++.|+++|++
T Consensus 156 ~~--~~-----------~~~~-~~--~~~-~~~~~~~~~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~t~l~~lr~~ 218 (404)
T COG0508 156 AA--AA-----------APAP-AA--AAP-ASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMALRKK 218 (404)
T ss_pred cc--cc-----------cccc-cc--CCc-ccccCCceeeecccHHHHHHHHHHHHHhhCCeEEEEeeecHHHHHHHHHH
Confidence 00 00 0000 00 000 02224578899999999999999999999999999999999999999999
Q ss_pred Hhhh---CCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHH
Q 006995 453 LKEK---HNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISME 529 (622)
Q Consensus 453 ~k~~---~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~ 529 (622)
++.. .|.|+||++|++||++.||++||.+|++|+++...+++++++|||+||++++||++||||+++++++.+|+++
T Consensus 219 ~~~~~~~~g~klt~~~f~~kA~~~Alk~~P~~Na~~~~~~~~iv~~~~~~igiAv~t~~GLvvpVir~a~~~~~~~i~~~ 298 (404)
T COG0508 219 LKEEFEKKGVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLAEIAKE 298 (404)
T ss_pred hhhhhcccCccccHHHHHHHHHHHHHHhCCccceeeccccceEEEeccccEEEEEecCCCeEecceeecccCCHHHHHHH
Confidence 9832 2899999999999999999999999988886411699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccceeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEE
Q 006995 530 VKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLS 609 (622)
Q Consensus 530 ~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt 609 (622)
+.+|..++|+|+|+++|++||||||||+|+||...|+||||+||+||||+|++.++|++.++ ++.++++|+|+||
T Consensus 299 i~~la~~aR~~kl~~~e~~ggtftisn~G~~g~~~~tpiin~Pq~aILgv~~~~~rpv~~~~-----~i~~~~mm~lsls 373 (404)
T COG0508 299 IKDLAKKARDGKLTPEEMQGGTFTISNLGMFGSLMFTPIINPPQVAILGVGAIEERPVVVGG-----EIVVRPMMYLSLS 373 (404)
T ss_pred HHHHHHHHHhcCcCHHHhCCceEEeecCCccccceecccccChhHheeeccccccCceEecC-----ceeeEeeEeeccc
Confidence 99999999999999999999999999999999999999999999999999999999988765 7999999999999
Q ss_pred eecccccCccCCC
Q 006995 610 ADHRVFEGKVGGT 622 (622)
Q Consensus 610 ~DHRvvDGa~aa~ 622 (622)
||||++||+++++
T Consensus 374 ~DHRviDGa~aa~ 386 (404)
T COG0508 374 YDHRVIDGAEAAR 386 (404)
T ss_pred ccccccccHHHHH
Confidence 9999999999874
No 12
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=4.1e-77 Score=597.49 Aligned_cols=392 Identities=26% Similarity=0.369 Sum_probs=319.8
Q ss_pred CCCcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995 82 ELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (622)
Q Consensus 82 ~~~~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i 161 (622)
.....++|+|.|+||+|.|++|.+|||||||+|+++|.||||++||++++|+|+++|+|++|+.+.+|+ +.||++|.++
T Consensus 60 s~~gvv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddi-a~VGk~Lvd~ 138 (474)
T KOG0558|consen 60 SNSGVVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDI-AKVGKPLVDL 138 (474)
T ss_pred cccceEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhh-hHhCcceeee
Confidence 345689999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred EcCCcccccccccccCCcccccccccccccchhhhccccccccCCCCCCCceeeecCCCCCCcccceeeEeeeCCCCeee
Q 006995 162 VEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIE 241 (622)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pa~~a~a~s~~~~~~~~~~~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~ 241 (622)
+.++..... .. +..+ |
T Consensus 139 eve~~~ds~------e~----------------------s~es-------------~----------------------- 154 (474)
T KOG0558|consen 139 EVEDSQDSP------ED----------------------SDES-------------P----------------------- 154 (474)
T ss_pred eeccCcCCc------cc----------------------CCcc-------------c-----------------------
Confidence 754421100 00 0000 0
Q ss_pred cCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCCCCcCCcCCCCCCCcccCCCCCCCCCCcccc
Q 006995 242 VGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSKDVV 321 (622)
Q Consensus 242 ~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (622)
+ +..|.. + .
T Consensus 155 -----------~-----------------vs~~~~----------------------------~---------------~ 163 (474)
T KOG0558|consen 155 -----------A-----------------VSLGES----------------------------K---------------Q 163 (474)
T ss_pred -----------c-----------------ccCCCC----------------------------c---------------h
Confidence 0 000000 0 0
Q ss_pred ccccCCCccCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006995 322 KVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKS 401 (622)
Q Consensus 322 ~~~~~~~~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (622)
...+.....++|++||||.|+||||+.|.|||++|||+|+||++|+.+..+--.... +.-....| .+.|+..
T Consensus 164 ~~~~~~~tlaTPaVRrlA~e~~idla~v~gtGKdGRvLKeDvL~fl~q~pg~~~~~~-------~~~~a~~~-~~~ps~~ 235 (474)
T KOG0558|consen 164 GEESLLKTLATPAVRRLAKENGIDLAEVTGTGKDGRVLKEDVLRFLGQVPGFVTDPS-------PSEHAVIP-GPSPSTK 235 (474)
T ss_pred hhhhccccccCHHHHHHHHHhCCceEeeeccCCCCcchHHHHHHHhccCCCCccCCC-------CceeecCC-CCCCccc
Confidence 001112235899999999999999999999999999999999999864311100000 00000000 0001110
Q ss_pred CccCCCCceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHh---hhCCCCccHHHHHHHHHHHHHhhc
Q 006995 402 DLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELK---EKHNTKVSVNDIVIKAVAVALKNV 478 (622)
Q Consensus 402 ~~~~~~~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k---~~~g~k~t~~~~iikAva~Al~~~ 478 (622)
..+.-.....+|+.+.+|+|-+.|+++ ..||||.+..|||+|.|++||+++| .+.|+|+||++|++||++.||.++
T Consensus 236 a~~~~~~Dkt~plrGf~rAMvKtMt~a-lkiPHF~y~dEIn~~sLvklr~elk~~a~e~~IKltfmPf~iKaaSlaL~ky 314 (474)
T KOG0558|consen 236 ASSNLEADKTVPLRGFSRAMVKTMTEA-LKIPHFGYVDEINCDSLVKLRQELKENAKERGIKLTFMPFFIKAASLALLKY 314 (474)
T ss_pred ccCcccccceeechhHHHHHHHHHHHH-hcCCccccccccChHHHHHHHHHHhhhhhhcCceeeehHHHHHHHHHHHhhC
Confidence 001111245679999999999999999 7999999999999999999999997 567899999999999999999999
Q ss_pred cccceeecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCC
Q 006995 479 PEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLG 558 (622)
Q Consensus 479 P~lN~~~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG 558 (622)
|.+|++++.+...|++...+|||+|+++++||++|.|+|++.+||.||++++++|.++.+.|+|+++|+.|||||+||+|
T Consensus 315 P~vNss~d~~~e~ii~K~sHNIgvAmdT~~GLvVPNiKN~q~~si~eIakeLnrLq~~g~~~qls~~D~t~GTftLSNIG 394 (474)
T KOG0558|consen 315 PIVNSSFDEESENIILKGSHNIGVAMDTEQGLVVPNIKNVQSLSIFEIAKELNRLQELGANGQLSPEDLTGGTFTLSNIG 394 (474)
T ss_pred ccccchhhhhhhhhhhhcccceeEEecCCCceeccCccccchhhHHHHHHHHHHHHHhhhcCCcChhhccCceEEeeecc
Confidence 99999999876679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccceeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995 559 MFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT 622 (622)
Q Consensus 559 ~~G~~~~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~ 622 (622)
.+|.++..|+|++||+||.++|++.+.|+.. ..| ++....+|.++|++||||+||+..||
T Consensus 395 ~IGGtf~~P~i~~PeVAIgAlGrie~vPrFn--kk~--~V~~a~IM~VswsADHRViDGaTmar 454 (474)
T KOG0558|consen 395 AIGGTFASPVIMPPEVAIGALGRIEKVPRFN--KKG--EVYPASIMMVSWSADHRVIDGATMAR 454 (474)
T ss_pred cccccccCcccccchhhhhhccccccccccC--CCC--CEEEeEEEEEEeecCceeeccHHHHH
Confidence 9999999999999999999999999765553 333 79999999999999999999998764
No 13
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=100.00 E-value=1.6e-74 Score=622.78 Aligned_cols=344 Identities=28% Similarity=0.427 Sum_probs=282.2
Q ss_pred eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCCC
Q 006995 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG 292 (622)
Q Consensus 213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~~ 292 (622)
.++.||++|++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++|+. |++|++|++|.++++
T Consensus 92 ~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~-V~vG~~L~~I~~~~~ 170 (463)
T PLN02226 92 VEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDT-VEPGTKVAIISKSED 170 (463)
T ss_pred eEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCE-ecCCCEEEEeccCCc
Confidence 5899999999999999999999999999999999999999999999999999999999999999 999999999964332
Q ss_pred CcCCcCCCCCCCcccCCCCCCCCCCccccccccCCCccCChhHHhHHHHcCCCccccc-----ccCCCCeeechhhHHHH
Q 006995 293 DVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQ-----ASGPYGTLLKGDVLAAI 367 (622)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~giDls~v~-----gtGp~GrI~k~DV~~~~ 367 (622)
+.+. .. . .+ .++. . ..+.+.. +..|++ +++++++.+. ++|+.+
T Consensus 171 ~~~~-~~--~-~~--~~~~--~--~~~~~~~---------~~~~~~--~~~v~asp~~r~~~~~~~~~~----------- 218 (463)
T PLN02226 171 AASQ-VT--P-SQ--KIPE--T--TDPKPSP---------PAEDKQ--KPKVESAPVAEKPKAPSSPPP----------- 218 (463)
T ss_pred cccc-cC--c-cC--CCCC--C--CCCCCCC---------cccccc--ccCCCcchhhccccCCCCCCC-----------
Confidence 1110 00 0 00 0000 0 0000000 000111 4455555443 011100
Q ss_pred hcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHH
Q 006995 368 KSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLL 447 (622)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~ 447 (622)
+ +.+ ...+.. ......+.+|+++|||.||++|++||+++||||++.|+|+|+|+
T Consensus 219 ---------------------~-~~~-~~~~~~---~~~~~~~~ipls~~Rk~IA~~M~~S~~tiPh~t~~~evDvt~L~ 272 (463)
T PLN02226 219 ---------------------P-KQS-AKEPQL---PPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLM 272 (463)
T ss_pred ---------------------C-ccc-ccCccc---ccCCCceeeeChHHHHHHHHHHHHHHhcCCEEEEEEEEEcHHHH
Confidence 0 000 000000 00001356899999999999999999999999999999999999
Q ss_pred HHHHHHhh----hCCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCH
Q 006995 448 SFRKELKE----KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSI 523 (622)
Q Consensus 448 ~~rk~~k~----~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl 523 (622)
++|+++|. +.|.|+||++||+||+++||++||.+|++|+++. |+++++|||||||++++||++|||||+++++|
T Consensus 273 ~lR~~l~~~~~~~~g~klS~~~~liKAva~AL~~~P~lNa~~~~~~--i~~~~~vnIGvAV~t~~GLvVPVIr~ad~~sl 350 (463)
T PLN02226 273 KLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDGDD--IIYRDYVDISIAVGTSKGLVVPVIRGADKMNF 350 (463)
T ss_pred HHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhCCHhheEEcCCE--EEEeCcccEEEEEECCCCEEeccCCCcccCCH
Confidence 99999973 3488999999999999999999999999998754 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccceeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcE
Q 006995 524 SAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTK 603 (622)
Q Consensus 524 ~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~ 603 (622)
.||++++++|++++|+|+|+++|++||||||||+|+||+++|+|||||||+||||+|++.++|++.+| ++++|++
T Consensus 351 ~eIa~ei~~L~~kAR~gkL~~~dl~GGTfTISNlG~~Gv~~ftPIInpPqvAILgvG~i~~~pvv~~g-----~i~~r~~ 425 (463)
T PLN02226 351 AEIEKTINGLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVVGG-----SVVPRPM 425 (463)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEECCCcccccceeccccCCcEEEEEcccceEEEEEECC-----EEEEEeE
Confidence 99999999999999999999999999999999999999999999999999999999999999998765 7999999
Q ss_pred EEEEEEeecccccCccCCC
Q 006995 604 MNLTLSADHRVFEGKVGGT 622 (622)
Q Consensus 604 m~lslt~DHRvvDGa~aa~ 622 (622)
|+||||||||||||+++|+
T Consensus 426 m~lsLs~DHRVIDGa~aA~ 444 (463)
T PLN02226 426 MYVALTYDHRLIDGREAVY 444 (463)
T ss_pred EEEeEecchhhhCcHHHHH
Confidence 9999999999999999874
No 14
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=100.00 E-value=6.7e-73 Score=616.61 Aligned_cols=384 Identities=39% Similarity=0.598 Sum_probs=316.0
Q ss_pred eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCCC
Q 006995 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG 292 (622)
Q Consensus 213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~~ 292 (622)
.++.||++|++|.+|+|.+|+|++||.|+.||+|++||+||+.++++||.+|+|.++++++|+. |.+|++|+.|.+.++
T Consensus 3 ~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~-v~~G~~l~~i~~~~~ 81 (411)
T PRK11856 3 FEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDV-VPVGSVIAVIEEEGE 81 (411)
T ss_pred eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCE-eCCCCEEEEEecCCC
Confidence 3689999999999999999999999999999999999999999999999999999999999999 999999999976543
Q ss_pred -CcCCcCCCCCCCcccCC-CCCCC--CCCcccc---ccccCCCccCChhHHhHHHHcCCCcccccccCCCCeeechhhHH
Q 006995 293 -DVGTVKNSVTSGAEVKG-EKETH--HDSKDVV---KVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLA 365 (622)
Q Consensus 293 -~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~---~~~~~~~~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~ 365 (622)
+.+.++.+....+.+.+ ....+ ...++.. ........++||+||+||+||||||++|+||||+|||+++||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~~~gidl~~i~gsG~~Gri~~~Dv~~ 161 (411)
T PRK11856 82 AEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPAVRKLARELGVDLSTVKGSGPGGRITKEDVEA 161 (411)
T ss_pred CccccccCCCCCCCCCCCCCCCCCCCCCCCCcccCcccccCCcccCChHHHHHHHHcCCCHHHCcCCCCCCeEEHHHHHH
Confidence 22111110000000000 00000 0000000 00011123689999999999999999999999999999999999
Q ss_pred HHhcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceeecCchHhHHHHHHhhhccCCcceEEEEeeeechH
Q 006995 366 AIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDP 445 (622)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~ 445 (622)
|+....... .+ +..+ + ...+. ......+.+|++++||.|+++|.+||+++||||++.++|+|+
T Consensus 162 ~~~~~~~~~--~~-------~~~~---~-~~~~~----~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P~~~~~~~idvt~ 224 (411)
T PRK11856 162 AAAAAAPAA--AA-------AAAA---A-AAPPA----AAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTA 224 (411)
T ss_pred HHhcccccC--CC-------CCCC---C-CCCCc----ccCCCceEeeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEhHH
Confidence 975321100 00 0000 0 00000 001135678999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHH
Q 006995 446 LLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISA 525 (622)
Q Consensus 446 l~~~rk~~k~~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~e 525 (622)
|+++|++++.. +.++||++||+||+++||++||+||++|+++. +++|+++|||+||++++||++|+|+++++++|.+
T Consensus 225 l~~~~k~~~~~-~~~ls~~~~~ikav~~Al~~~P~~n~~~~~~~--i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~e 301 (411)
T PRK11856 225 LLALRKQLKAI-GVKLTVTDFLIKAVALALKKFPELNASWDDDA--IVLKKYVNIGIAVATDGGLIVPVIRDADKKSLFE 301 (411)
T ss_pred HHHHHHHHHhh-ccCccHHHHHHHHHHHHHHhCcHhheEEeCCE--EEEcCCcCEEEEEECCCCeEeCcCCCcccCCHHH
Confidence 99999999643 47999999999999999999999999998865 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccceeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEE
Q 006995 526 ISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMN 605 (622)
Q Consensus 526 ia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~ 605 (622)
|+++++++++++|+|+|+++|++||||||||+||||..+|+||||+||+|||++|++.++|++.+| +++++.+|+
T Consensus 302 i~~~~~~~~~~ar~~~l~~~~~~~gtftiSn~G~~g~~~~~Pii~~p~~ail~iG~~~~~~~~~~g-----~~~~~~~m~ 376 (411)
T PRK11856 302 LAREIKDLAEKAREGKLKPEELQGGTFTISNLGMFGGDYFTPIINPPEVAILGVGAIVERPVVVDG-----EIVVRKVMP 376 (411)
T ss_pred HHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCccCCCceECccCCCceEEEEcccceEEEEEECC-----EEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999887644 799999999
Q ss_pred EEEEeecccccCccCCC
Q 006995 606 LTLSADHRVFEGKVGGT 622 (622)
Q Consensus 606 lslt~DHRvvDGa~aa~ 622 (622)
|||+||||||||+++|+
T Consensus 377 lslt~DHRviDG~~aa~ 393 (411)
T PRK11856 377 LSLSFDHRVIDGADAAR 393 (411)
T ss_pred EeEEeehhhcCcHHHHH
Confidence 99999999999999874
No 15
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=100.00 E-value=2.8e-73 Score=609.69 Aligned_cols=353 Identities=30% Similarity=0.460 Sum_probs=288.8
Q ss_pred CceeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995 211 PRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED 290 (622)
Q Consensus 211 ~~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~ 290 (622)
...++.||++|++|++|+|++|+|++||.|++||+||+|||||++++|+||.+|+|.++++++|+. |++|++|+.|.+.
T Consensus 43 ~i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~-V~~G~~L~~I~~~ 121 (418)
T PTZ00144 43 SIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDT-VEVGAPLSEIDTG 121 (418)
T ss_pred cceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCE-ecCCCEEEEEcCC
Confidence 347899999999999999999999999999999999999999999999999999999999999999 9999999999654
Q ss_pred CCCcCCcCCCCCCCcccCCCCCCCCCCccccccccCCCccCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhcC
Q 006995 291 PGDVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSG 370 (622)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~~ 370 (622)
+++.+. +. ..+ . +..+. . ..+. ......|.+++++.++++++..+.. .. .
T Consensus 122 ~~~~~~-~~--~~~--~-~~~~~-~-~~~~------~~~~~~p~~~~~a~~~~~a~p~vr~---------------~~-~ 171 (418)
T PTZ00144 122 GAPPAA-AP--AAA--A-AAKAE-K-TTPE------KPKAAAPTPEPPAASKPTPPAAAKP---------------PE-P 171 (418)
T ss_pred Cccccc-cc--ccc--C-CCCCc-c-CCCC------CCCCCCCccccccccccCCchhhhc---------------cc-c
Confidence 332110 00 000 0 00000 0 0000 0001235566666666666655520 00 0
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHH
Q 006995 371 KVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFR 450 (622)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~r 450 (622)
.+ .. ...+ .+. ... ....+.+|+++|||+||++|++||+++||||++.++|+|+|+++|
T Consensus 172 --~~--~~-----------~~~~---~~~--~~~-~~~~~~ipls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~l~~~r 230 (418)
T PTZ00144 172 --AP--AA-----------KPPP---TPV--ARA-DPRETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMELR 230 (418)
T ss_pred --CC--CC-----------CCCC---CCc--ccc-CCCceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEechHHHHHH
Confidence 00 00 0000 000 000 001345799999999999999999999999999999999999999
Q ss_pred HHHhh----hCCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHH
Q 006995 451 KELKE----KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAI 526 (622)
Q Consensus 451 k~~k~----~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~ei 526 (622)
++++. +.|.|+||++||+||+++||++||.+|++|+++. |++++++||||||++++||++|||+++++++|.+|
T Consensus 231 ~~~~~~~~~~~g~klS~~~~liKAva~AL~~~P~~Na~~~~~~--i~~~~~vnIgvAV~~~~GL~vPVI~~ad~~sl~eI 308 (418)
T PTZ00144 231 KEYKDDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYIDGDE--IVYRNYVDISVAVATPTGLVVPVIRNCENKSFAEI 308 (418)
T ss_pred HHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhheEEcCCE--EEEecCCCEEEEEECCCCEEEccCCCcccCCHHHH
Confidence 99984 3488999999999999999999999999998764 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccceeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEE
Q 006995 527 SMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNL 606 (622)
Q Consensus 527 a~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~l 606 (622)
++++++|++++|+|+|+++|++||||||||+||||+++|+|||||||+||||+|++.++|++.+| ++++|++|+|
T Consensus 309 a~ei~~L~~~ar~g~L~~~e~~GgTfTISNlG~~G~~~~tpIInpPq~aILgvG~i~~~pvv~~g-----~i~~r~~m~l 383 (418)
T PTZ00144 309 EKELADLAEKARNNKLTLEDMTGGTFTISNGGVFGSLMGTPIINPPQSAILGMHAIKKRPVVVGN-----EIVIRPIMYL 383 (418)
T ss_pred HHHHHHHHHHHHcCCCCHHHhCCceEEEECCCCCCcceeeeeecCCceEEEecccceeEeEEECC-----EEEEEeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999998755 7999999999
Q ss_pred EEEeecccccCccCCC
Q 006995 607 TLSADHRVFEGKVGGT 622 (622)
Q Consensus 607 slt~DHRvvDGa~aa~ 622 (622)
||+|||||+||++||+
T Consensus 384 sLs~DHRviDGa~AA~ 399 (418)
T PTZ00144 384 ALTYDHRLIDGRDAVT 399 (418)
T ss_pred EEecchhhhChHHHHH
Confidence 9999999999999874
No 16
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=100.00 E-value=6.8e-68 Score=559.67 Aligned_cols=279 Identities=34% Similarity=0.499 Sum_probs=240.2
Q ss_pred CccCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCC
Q 006995 328 FTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSD 407 (622)
Q Consensus 328 ~~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (622)
..++||+||+||+|+||||++|+||||+|||+++||++|+....... ..+ ++.. ....+ +.+ .+. ....
T Consensus 48 ~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~k~DV~~~~~~~~~~~--~~~---~~~~--~~~~~--~~~-~~~-~~~~ 116 (347)
T PRK14843 48 VVRISPLAKRIALEHNIAWQEIQGTGHRGKIMKKDVLALLPENIEND--SIK---SPAQ--IEKVE--EVP-DNV-TPYG 116 (347)
T ss_pred cccCCchhhHHHHHcCCCHhhCCCCCCCCcccHHHHHHHHhccccCc--ccc---CCCC--Ccccc--CCC-ccc-ccCC
Confidence 34689999999999999999999999999999999999974321000 000 0000 00000 000 000 0111
Q ss_pred CceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhh----hCCCCccHHHHHHHHHHHHHhhccccce
Q 006995 408 SFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE----KHNTKVSVNDIVIKAVAVALKNVPEANA 483 (622)
Q Consensus 408 ~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~----~~g~k~t~~~~iikAva~Al~~~P~lN~ 483 (622)
..+.+|+++|||.|+++|++||+++||||++.+||+|+|+++|++++. +.|.|+||++||+||++.||++||.||+
T Consensus 117 ~~~~v~l~~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na 196 (347)
T PRK14843 117 EIERIPMTPMRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINA 196 (347)
T ss_pred cceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEEchHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeE
Confidence 245689999999999999999999999999999999999999999873 3478999999999999999999999999
Q ss_pred eecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCcc
Q 006995 484 YWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVD 563 (622)
Q Consensus 484 ~~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~ 563 (622)
+|+++.+.|++|++|||||||++++||++|||||+++|||.+|++++++|.+++|+|+|+++||+||||||||+||||++
T Consensus 197 ~~~~~~~~i~~~~~vnigvAV~~~~GL~vPVIr~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~d~~GgTfTISNlG~~G~~ 276 (347)
T PRK14843 197 SLTEDGKTIITHNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGMFGVQ 276 (347)
T ss_pred EEecCCCeEEEecccceEEEEecCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCCCccc
Confidence 99865445999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995 564 QFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT 622 (622)
Q Consensus 564 ~~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~ 622 (622)
+|+|||||||+||||+|++.++|++++| +++++++|+||||||||||||++||+
T Consensus 277 ~~tpIInpPq~aIlgvG~i~~~pv~~~g-----~i~~r~~m~lsls~DHRviDGa~aa~ 330 (347)
T PRK14843 277 SFGPIINQPNSAILGVSSTIEKPVVVNG-----EIVIRPIMSLGLTIDHRVVDGMAGAK 330 (347)
T ss_pred ceeccccCCceEEEecCCcceeeEEECC-----eEEEEeEEEEEEecchhhhCcHHHHH
Confidence 9999999999999999999999988755 79999999999999999999999874
No 17
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=1.9e-67 Score=547.49 Aligned_cols=283 Identities=31% Similarity=0.403 Sum_probs=240.2
Q ss_pred ccCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCC
Q 006995 329 TKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDS 408 (622)
Q Consensus 329 ~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (622)
.++||+||+||+|+||||++|+|||++|||+++||++|+........ ++... +.+.. ...+..+.+.... ....
T Consensus 2 ~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~--~~~~~-~~~~~-~~~~~~~~~~~~~--~~~~ 75 (306)
T PRK11857 2 ILATPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSLKSAPT--PAEAA-SVSSA-QQAAKTAAPAAAP--PKLE 75 (306)
T ss_pred cCCCchhHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHhhccccccC--Ccccc-ccccc-cccccccCCcccc--cCCC
Confidence 35899999999999999999999999999999999999743211000 00000 00000 0000000010000 1112
Q ss_pred ceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhh----hCCCCccHHHHHHHHHHHHHhhcccccee
Q 006995 409 FEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE----KHNTKVSVNDIVIKAVAVALKNVPEANAY 484 (622)
Q Consensus 409 ~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~----~~g~k~t~~~~iikAva~Al~~~P~lN~~ 484 (622)
.+.+|+++||+.|+++|++|++++||||++.+||+|+|+++|+++|+ +.|.|+||++||+||+++||++||.+|++
T Consensus 76 ~~~~~ls~~R~~ia~~M~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~~Na~ 155 (306)
T PRK11857 76 GKREKVAPIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAK 155 (306)
T ss_pred ceeccCcHHHHHHHHHHHHhhccCCeEEEEEEEEchHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEE
Confidence 35579999999999999999999999999999999999999999974 25889999999999999999999999999
Q ss_pred ecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccc
Q 006995 485 WDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQ 564 (622)
Q Consensus 485 ~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~ 564 (622)
|+++.+.|+++++|||||||++++||++|||+|++++||.||++++++|.+++|+|+|+++|++||||||||+||||+.+
T Consensus 156 ~~~~~~~i~~~~~vnigvAv~~~~GL~vPVI~~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~dl~ggTfTISNlG~~G~~~ 235 (306)
T PRK11857 156 YDEATSELVYPDTLNLGIAVDTEAGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGSVGSLY 235 (306)
T ss_pred EeCCCCEEEEcCCccEEEEEECCCCEEeCCcCCcCcCCHHHHHHHHHHHHHHHHcCCCChhhcCCccEEEeCCCCCCccc
Confidence 98754579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995 565 FCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT 622 (622)
Q Consensus 565 ~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~ 622 (622)
|+|||||||+||||+|++.++|++.+| +++++++|+|||+||||||||++||+
T Consensus 236 ~tpiIn~pq~aILgvG~i~~~pvv~~g-----~i~~r~~m~lslt~DHRviDGa~aa~ 288 (306)
T PRK11857 236 GVPVINYPELAIAGVGAIIDKAIVKNG-----QIVAGKVMHLTVAADHRWIDGATIGR 288 (306)
T ss_pred eecccCCCccceeecccceEEeEEECC-----EEEEeeeeEEeEecchhhhCcHHHHH
Confidence 999999999999999999999988654 79999999999999999999999874
No 18
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=1.1e-66 Score=525.20 Aligned_cols=360 Identities=30% Similarity=0.414 Sum_probs=282.1
Q ss_pred ceeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCC
Q 006995 212 RVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP 291 (622)
Q Consensus 212 ~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~ 291 (622)
..++..|-++++++||.|..|++++||+|++++.|++|||||.+++|.||.+|+|.++++++||+ |.+|+.|+.|....
T Consensus 72 ~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdt-V~~g~~la~i~~ga 150 (457)
T KOG0559|consen 72 VVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDT-VTPGQKLAKISPGA 150 (457)
T ss_pred eeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCc-ccCCceeEEecCCC
Confidence 45678899999999999999999999999999999999999999999999999999999999999 99999999996532
Q ss_pred CCcCCcCCCCCCCcccCCCCCCCC-CCccccccccCCCccCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhcC
Q 006995 292 GDVGTVKNSVTSGAEVKGEKETHH-DSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSG 370 (622)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~~ 370 (622)
...+.. +.+|..++++.+++ .+++.+.+. .......|.++
T Consensus 151 Apa~~~----~~apa~~~pk~~~a~~a~p~~~s~-~~p~~~apv~e---------------------------------- 191 (457)
T KOG0559|consen 151 APAKGG----ASAPAKAEPKTAPAAAAPPKPSSK-PPPKEAAPVAE---------------------------------- 191 (457)
T ss_pred CCcccc----ccCCCccCCCCCCCCCCCCCccCC-CCccccCCCCC----------------------------------
Confidence 211110 11121111111111 000100000 00000001000
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHH
Q 006995 371 KVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFR 450 (622)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~r 450 (622)
.++.+.+..+..+....+...+... ++......+....+++|++||+.||.+|.+|.++...++.+.||||+.|+++|
T Consensus 192 -~p~~p~~~~P~~~~a~k~~v~~~~~-~p~~~~~~~R~E~RVkMnRmR~RIA~RLKdsQNt~A~LTTFNEvDMS~lm~mR 269 (457)
T KOG0559|consen 192 -SPPAPSSPEPVPASAKKPSVAQPKP-PPSEGATPSRSERRVKMNRMRLRIAERLKDSQNTAAMLTTFNEVDMSNLMEMR 269 (457)
T ss_pred -CCCCCCCCCCCCccccCccccCCCC-CcccccCCCcchhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHH
Confidence 0000000000000000000000000 01011111234677999999999999999999999999999999999999999
Q ss_pred HHHh----hhCCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHH
Q 006995 451 KELK----EKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAI 526 (622)
Q Consensus 451 k~~k----~~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~ei 526 (622)
+++| +++|+|+.|+.+|+||++.||++.|.+|+.|+++. |+|+|+|||+|||++++||++|||||++.+++.||
T Consensus 270 k~ykdaf~kKhGvKlGfMs~F~KA~~~Alq~qPvVNavIdg~~--iVYRDyvDISvAVaTpkGLVvPViRnae~Mn~adI 347 (457)
T KOG0559|consen 270 KQYKDAFLKKHGVKLGFMSGFSKAAAYALQDQPVVNAVIDGDD--IVYRDYVDISVAVATPKGLVVPVIRNAESMNFADI 347 (457)
T ss_pred HHHHHHHHHHhCceeeehhHHHHHHHHHhhhCcceeeeecCCe--eEEeecceeEEEeecCCceeeeeecccccccHHHH
Confidence 9988 67999999999999999999999999999999986 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccceeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEE
Q 006995 527 SMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNL 606 (622)
Q Consensus 527 a~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~l 606 (622)
-.+|..|..|||+|+|+.+||.||||||||-|.||..+.||||||||+||||+.+|.+||+++.| ++++|++|+|
T Consensus 348 E~~i~~L~~KAr~g~laiedM~gGTFTISNGGVfGSL~gTPIINpPQsAILGmHgI~eRPv~v~G-----~Vv~RPMMYv 422 (457)
T KOG0559|consen 348 EKTIAGLGKKARDGKLAIEDMAGGTFTISNGGVFGSLYGTPIINPPQSAILGMHGIKERPVVVGG-----QVVPRPMMYV 422 (457)
T ss_pred HHHHHHHHHhhccCceeeeeccCceEEEeCCcEeeeeccCcccCCchhhhhhcccccccceeeCC-----EeeeccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999988 9999999999
Q ss_pred EEEeecccccCccC
Q 006995 607 TLSADHRVFEGKVG 620 (622)
Q Consensus 607 slt~DHRvvDGa~a 620 (622)
.||||||+|||.+|
T Consensus 423 ALTYDHRliDGREA 436 (457)
T KOG0559|consen 423 ALTYDHRLIDGREA 436 (457)
T ss_pred EeeccccccccHHH
Confidence 99999999999876
No 19
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2.3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....
Probab=100.00 E-value=6.3e-56 Score=445.93 Aligned_cols=209 Identities=48% Similarity=0.745 Sum_probs=184.1
Q ss_pred CceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhhh---CCCCccHHHHHHHHHHHHHhhcccccee
Q 006995 408 SFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEK---HNTKVSVNDIVIKAVAVALKNVPEANAY 484 (622)
Q Consensus 408 ~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~~---~g~k~t~~~~iikAva~Al~~~P~lN~~ 484 (622)
+++++|++++||+|+++|++|++++||+|++.+||+|+|+++|+++|+. .+.++|+++|++||+++||++||+||++
T Consensus 3 ~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~~~~~kis~~~~likAva~AL~~~P~lNa~ 82 (231)
T PF00198_consen 3 EETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLALRKELKEAGEEPGGKISITDFLIKAVALALKEHPELNAS 82 (231)
T ss_dssp SCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHHHHHHHHHHHHTTST-THHHHHHHHHHHHHHHSGGGSEE
T ss_pred CcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHHHHHhhhHHHhhccCCChhHeeeehHhhhhHHHHHhccc
Confidence 4788999999999999999999999999999999999999999999843 3569999999999999999999999999
Q ss_pred ecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccc
Q 006995 485 WDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQ 564 (622)
Q Consensus 485 ~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~ 564 (622)
|+++. +|++++++||||||++++||++|||+|++++|+.||+++++++++++|+|+|+++|++||||||||+|+||+++
T Consensus 83 ~~~~~-~i~~~~~vnIgvAV~~~~GL~vPVIr~a~~~sl~eIa~e~~~l~~~ar~g~l~~~d~~g~TftisNlG~~g~~~ 161 (231)
T PF00198_consen 83 WDGDG-EIVLYERVNIGVAVDTPDGLVVPVIRDADKKSLAEIAKELRDLAERAREGKLTPEDLQGGTFTISNLGMFGVES 161 (231)
T ss_dssp EETTS-EEEEESS--EEEEEEETTEEEEEEETTGGGS-HHHHHHHHHHHHHHHHTT---GGGGSS-SEEEEEGGGTT-SC
T ss_pred ccccc-ceeeeeeEEEEEEEEcCCCEEEEEEeCCccccHHHHHHHHhhhhccchhhhhhhhhhhccceeeeecCCCCcce
Confidence 98874 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995 565 FCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT 622 (622)
Q Consensus 565 ~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~ 622 (622)
|+|||||||+|||++|++.++|++.+| +++++++|+|||||||||+||++||+
T Consensus 162 ~~pii~~pq~ail~vG~i~~~p~~~~~-----~~~~~~~~~lslt~DHRvidG~~aa~ 214 (231)
T PF00198_consen 162 FTPIINPPQVAILGVGAIRDRPVVEDG-----EVVVRPVMNLSLTFDHRVIDGAEAAR 214 (231)
T ss_dssp EE----TTSSEEEEEEEEEEEEEEETT-----CEEEEEEEEEEEEEETTTS-HHHHHH
T ss_pred eEccCCcccceEEEecceEEEEEEEec-----cceeeEEEEeEEeccceEEcHHHHHH
Confidence 999999999999999999999998655 79999999999999999999999874
No 20
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=3.6e-47 Score=425.08 Aligned_cols=211 Identities=23% Similarity=0.289 Sum_probs=195.0
Q ss_pred ceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHh----hhCCCCccHHHHHHHHHHHHHhhcccccee
Q 006995 409 FEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELK----EKHNTKVSVNDIVIKAVAVALKNVPEANAY 484 (622)
Q Consensus 409 ~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k----~~~g~k~t~~~~iikAva~Al~~~P~lN~~ 484 (622)
.+.+|+++++++|+++|..| .++|+++...+|+++.|+++|+.+| +..|.|+||++||+||+++||++||.||++
T Consensus 115 ~~~~~LrG~a~aiAkNM~aS-L~vPtaTsvr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P~mNas 193 (1228)
T PRK12270 115 DEVTPLRGAAAAVAKNMDAS-LEVPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFPNMNRH 193 (1228)
T ss_pred cceeecccHHHHHHHHHHhh-hccCceeeeecccHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCchhhce
Confidence 45679999999999999999 5699999999999999999999997 457899999999999999999999999999
Q ss_pred ec--CCCCeEEEcCCccEEEEEecC-----CCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeC
Q 006995 485 WD--VEKGEIVLCDAIDISIAVATE-----KGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNL 557 (622)
Q Consensus 485 ~~--~~~~~i~~~~~vnigiAV~~~-----~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNl 557 (622)
|+ ++++.|+++++|||||||+++ +||+||+||++++|+|.+|.+++.+|+.|+|+|||+++||+||||||||+
T Consensus 194 y~~~DGKp~iv~~~~VNlGiAVdl~~~dGsRgLVVPvIK~Ad~l~f~ef~~ay~dLV~KAR~gKLt~eD~~GgTFTISN~ 273 (1228)
T PRK12270 194 YAEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWAAYEDIVRRARDGKLTADDFQGTTISLTNP 273 (1228)
T ss_pred eeccCCCceeeccCCcceEEEEecCCCCCCcceeeccccccccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEecC
Confidence 98 444459999999999999999 68999999999999999999999999999999999999999999999999
Q ss_pred CCCCccceeeecCCCceEEEEeccceeEEEEeeC---CCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995 558 GMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIG---SDGNETPAVVTKMNLTLSADHRVFEGKVGGT 622 (622)
Q Consensus 558 G~~G~~~~tpii~~pq~ail~vG~~~~~~~~~~g---~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~ 622 (622)
||||+.+|+||||+||+||||+|++...+++... .+| ++.++++|+||+|||||||||+++|+
T Consensus 274 G~iGt~~ftPILnppQ~AILGVGAi~~p~~f~gas~~~l~--~i~i~kvMtLTlTyDHRVIdGA~sg~ 339 (1228)
T PRK12270 274 GGIGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLA--ELGISKVMTLTSTYDHRIIQGAESGE 339 (1228)
T ss_pred CcccccceeeeecCCceEEEeccccccCceecCccccccc--ccceeeeEEeeeeccceeeccHhHHH
Confidence 9999999999999999999999999976665432 222 69999999999999999999999874
No 21
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.95 E-value=1.7e-26 Score=263.51 Aligned_cols=180 Identities=22% Similarity=0.305 Sum_probs=148.7
Q ss_pred ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995 86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (622)
Q Consensus 86 ~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~ 165 (622)
.+.|+||+|| |+||+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++||. |.+|++|+.|+.++
T Consensus 2 ~~~i~~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~-V~~G~~l~~i~~~~ 78 (633)
T PRK11854 2 AIEIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDK-VETGALIMIFESAD 78 (633)
T ss_pred CceEeeCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCE-EeCCCEEEEEeccc
Confidence 4579999999 99999999999999999999999999999999999999999999999999999 99999999996542
Q ss_pred cccccccccccCCcccccccccccccchhhhccccccccCCCCCCCceeeecCCCCCCcccceeeEeeeCCCCeeecCCe
Q 006995 166 DDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDV 245 (622)
Q Consensus 166 ~~~~~~~~~~~~~~~~a~~~~~~~~~~pa~~a~a~s~~~~~~~~~~~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~ 245 (622)
.... ..+ +. .. ....+ .+ .+. .......++.||++| +.+|+|.+|+|++||.|++||+
T Consensus 79 ~~~~----~~~-----~~-~~--~~~~~---~~-~~~----~~~~~~~~i~lp~~g--~~eg~v~~~~v~~Gd~V~~g~~ 136 (633)
T PRK11854 79 GAAD----AAP-----AQ-AE--EKKEA---AP-AAA----PAAAAAKDVHVPDIG--SDEVEVTEILVKVGDTVEAEQS 136 (633)
T ss_pred cccc----ccc-----cc-cc--ccccc---cc-ccc----cccCCceEEecccCC--CCCceEeEEEeCCCCEECCCCE
Confidence 1100 000 00 00 00000 00 000 011234689999999 9999999999999999999999
Q ss_pred eEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCC
Q 006995 246 ICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP 291 (622)
Q Consensus 246 l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~ 291 (622)
|+++|+||+.++|.||++|+|.++++++|+. |..|++|+.|....
T Consensus 137 l~~vEa~K~~~~I~Ap~~G~V~~i~v~~G~~-V~~G~~l~~i~~~~ 181 (633)
T PRK11854 137 LITVEGDKASMEVPAPFAGTVKEIKVNVGDK-VSTGSLIMVFEVAG 181 (633)
T ss_pred eeeeehhhceeEEeCCCCEEEEEEEecCCCE-EcCCcEeeEEeccc
Confidence 9999999999999999999999999999999 99999999987543
No 22
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=99.85 E-value=1.5e-21 Score=206.23 Aligned_cols=94 Identities=61% Similarity=1.002 Sum_probs=90.4
Q ss_pred CCcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995 83 LPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (622)
Q Consensus 83 ~~~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~ 162 (622)
++.|+.|.||.|+++|+||+|++|.++|||.+++||+||||||||++|+++..++|+++||++++|..||+||++||+|.
T Consensus 35 ~p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiiv 114 (470)
T KOG0557|consen 35 LPAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIV 114 (470)
T ss_pred CCcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred cCCccccccccccc
Q 006995 163 EDADDIQHIPATIA 176 (622)
Q Consensus 163 ~~~~~~~~~~~~~~ 176 (622)
+++++.++++.+..
T Consensus 115 e~e~di~~~k~~k~ 128 (470)
T KOG0557|consen 115 EDEDDIAAFKLPKD 128 (470)
T ss_pred cccccHHHhhcccc
Confidence 99999888877755
No 23
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=99.82 E-value=4.1e-20 Score=200.21 Aligned_cols=82 Identities=50% Similarity=0.763 Sum_probs=78.7
Q ss_pred cceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995 85 SHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED 164 (622)
Q Consensus 85 ~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~ 164 (622)
|.++|+||+||++|+||+|++|+||+||+|++||+|+||||||+++||+||++|+|.+|++++||. |++|++|++|+++
T Consensus 1 m~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~-V~Vg~~I~~i~~~ 79 (404)
T COG0508 1 MAIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDT-VPVGAVIARIEEE 79 (404)
T ss_pred CCceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCE-EcCCCeEEEEecC
Confidence 457899999999999999999999999999999999999999999999999999999999999999 9999999999887
Q ss_pred Ccc
Q 006995 165 ADD 167 (622)
Q Consensus 165 ~~~ 167 (622)
+++
T Consensus 80 ~~~ 82 (404)
T COG0508 80 GAD 82 (404)
T ss_pred CCc
Confidence 664
No 24
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=99.78 E-value=1.7e-18 Score=188.17 Aligned_cols=77 Identities=29% Similarity=0.557 Sum_probs=75.2
Q ss_pred eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995 87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED 164 (622)
Q Consensus 87 ~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~ 164 (622)
++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++||. |.+|++|++|+.+
T Consensus 92 ~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~-V~vG~~L~~I~~~ 168 (463)
T PLN02226 92 VEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDT-VEPGTKVAIISKS 168 (463)
T ss_pred eEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCE-ecCCCEEEEeccC
Confidence 8999999999999999999999999999999999999999999999999999999999999999 9999999999643
No 25
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=99.74 E-value=2.3e-18 Score=175.43 Aligned_cols=81 Identities=36% Similarity=0.617 Sum_probs=77.4
Q ss_pred CcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEc
Q 006995 84 PSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE 163 (622)
Q Consensus 84 ~~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~ 163 (622)
...+++++|.|+|+|+||+|.+|++++||+|++|+.||+|||||.+++|.||.+|+|.++++++||+ |..|+.|+.|..
T Consensus 70 ts~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdt-V~~g~~la~i~~ 148 (457)
T KOG0559|consen 70 TSVVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDT-VTPGQKLAKISP 148 (457)
T ss_pred cceeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCc-ccCCceeEEecC
Confidence 3478999999999999999999999999999999999999999999999999999999999999999 999999999986
Q ss_pred CC
Q 006995 164 DA 165 (622)
Q Consensus 164 ~~ 165 (622)
.+
T Consensus 149 ga 150 (457)
T KOG0559|consen 149 GA 150 (457)
T ss_pred CC
Confidence 43
No 26
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=99.73 E-value=1.8e-17 Score=183.61 Aligned_cols=92 Identities=61% Similarity=1.044 Sum_probs=85.9
Q ss_pred cccccccC-CCCcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCC-cc
Q 006995 74 GVRHFSSS-ELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS-KD 151 (622)
Q Consensus 74 ~~r~f~~~-~~~~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~-~~ 151 (622)
..|.|++. .++.+++|+||++|++|+||+|++|+|++||.|++||+||+|||||++++|+|+++|+|.+|++++|+ .
T Consensus 99 ~~~~~~~~~~~~~~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~- 177 (539)
T PLN02744 99 SARGFSSSSDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKE- 177 (539)
T ss_pred ccccccccccCCCCceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcc-
Confidence 46899876 77889999999999999999999999999999999999999999999999999999999999999996 7
Q ss_pred ccCCCeEEEEEcCCc
Q 006995 152 VPVGQPIAITVEDAD 166 (622)
Q Consensus 152 v~~G~~l~~i~~~~~ 166 (622)
|++|++|++|.++++
T Consensus 178 v~vG~~ia~i~~~~~ 192 (539)
T PLN02744 178 IKVGEVIAITVEEEE 192 (539)
T ss_pred cCCCCEEEEEccCcc
Confidence 999999999865444
No 27
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.73 E-value=7.7e-18 Score=139.88 Aligned_cols=74 Identities=46% Similarity=0.690 Sum_probs=72.1
Q ss_pred eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995 87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (622)
Q Consensus 87 ~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i 161 (622)
.+|++|.+|..+++++|.+|+|++||.|++||+||+||+||+.++|+||++|+|+++++++||. |..|++|+.|
T Consensus 1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~-V~~G~~l~~I 74 (74)
T PF00364_consen 1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDT-VEVGQVLAII 74 (74)
T ss_dssp EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEE-EETTSEEEEE
T ss_pred CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCE-ECCCCEEEEC
Confidence 4689999999999999999999999999999999999999999999999999999999999999 9999999986
No 28
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=99.71 E-value=4.1e-17 Score=176.18 Aligned_cols=82 Identities=32% Similarity=0.639 Sum_probs=77.7
Q ss_pred CcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEc
Q 006995 84 PSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE 163 (622)
Q Consensus 84 ~~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~ 163 (622)
..+++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++||. |.+|++|++|+.
T Consensus 42 ~~i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~-V~~G~~L~~I~~ 120 (418)
T PTZ00144 42 FSIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDT-VEVGAPLSEIDT 120 (418)
T ss_pred ccceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCE-ecCCCEEEEEcC
Confidence 4558999999999999999999999999999999999999999999999999999999999999999 999999999975
Q ss_pred CCc
Q 006995 164 DAD 166 (622)
Q Consensus 164 ~~~ 166 (622)
.++
T Consensus 121 ~~~ 123 (418)
T PTZ00144 121 GGA 123 (418)
T ss_pred CCc
Confidence 443
No 29
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=99.69 E-value=9.1e-17 Score=174.36 Aligned_cols=81 Identities=36% Similarity=0.588 Sum_probs=76.9
Q ss_pred cceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995 85 SHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED 164 (622)
Q Consensus 85 ~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~ 164 (622)
|.++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++||. |.+|++|+.|+.+
T Consensus 1 m~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~-V~~G~~l~~i~~~ 79 (407)
T PRK05704 1 MMVEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDT-VTVGQVLGRIDEG 79 (407)
T ss_pred CCeeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCE-eCCCCEEEEEecC
Confidence 346899999999999999999999999999999999999999999999999999999999999999 9999999999765
Q ss_pred Cc
Q 006995 165 AD 166 (622)
Q Consensus 165 ~~ 166 (622)
++
T Consensus 80 ~~ 81 (407)
T PRK05704 80 AA 81 (407)
T ss_pred Cc
Confidence 43
No 30
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2.3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....
Probab=99.66 E-value=1.5e-15 Score=150.32 Aligned_cols=173 Identities=17% Similarity=0.193 Sum_probs=130.6
Q ss_pred CCcceEEEEeeeechHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCCccEEEEEecCCC
Q 006995 430 QNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKG 509 (622)
Q Consensus 430 ~~iP~~~~~~evdvt~l~~~rk~~k~~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~G 509 (622)
..-|.++++.+||+|+|.++.|+. +++|+..+++++++|++++|+|+.+++++ |++++|+.++.+.+|..+++
T Consensus 23 ~~~p~~svT~~lDvT~l~~~~K~~------~~~Ff~~~ly~i~ka~N~~~efR~ri~~~-g~v~~~d~i~ps~Tv~~~~~ 95 (206)
T PF00302_consen 23 FDNPYFSVTVNLDVTNLYKYAKEK------GLSFFPAYLYAIMKAANEIPEFRYRIVDD-GEVVYYDRIDPSYTVFHKDD 95 (206)
T ss_dssp TSBEEEEEEEEEE-HHHHHHHHHT------T--HHHHHHHHHHHHHTTSGGGCEEEETT-SCEEEESS-EEEEEEEETTT
T ss_pred CCCceEecceeEEhHHHHHHHHHc------CCCcHHHHHHHHHHHHhcCHHHheeeeCC-CcEEEECCcceeeeEEeCCC
Confidence 477999999999999999998877 78999999999999999999999999987 46999999999999986653
Q ss_pred eEEeeeccCCCCCHHHHHHHHHHHHHHHHcC-CCCCCc-cCCCcEEEEeCCCCCccceeeecCCC-c--eEEEEecccee
Q 006995 510 LMTPIVRNADQKSISAISMEVKELAEKARAG-KLAPHE-FQGGTFSISNLGMFPVDQFCAIINPP-Q--AGILAVGRGNQ 584 (622)
Q Consensus 510 L~~pvI~~a~~~sl~eia~~~~~l~~~ar~g-~l~~~d-~~ggtftISNlG~~G~~~~tpii~~p-q--~ail~vG~~~~ 584 (622)
-..-.+.-....++.++.++..+.++++++. .+.++. .....|.+|++-++.-++++.-++.+ . .-++..|+..+
T Consensus 96 ~tFs~~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~S~lPW~~FTs~~~~~~~~~~~~~P~it~GK~~~ 175 (206)
T PF00302_consen 96 ETFSFCWTEYDEDFEEFYANYEADIERYKESKGLFPKPNDPDNLIYISCLPWVSFTSFSHPVPNGKDDSIPRITWGKYFE 175 (206)
T ss_dssp TEEEEEEE---SSHHHHHHHHHHHHHHHTTS-SSSTTCCHHSSEEEEEEETTS--SEEEEEESSTTT-SS-EEEEE--EE
T ss_pred CeEEEEEecCCCCHHHHHHHHHHHHHHHhccccccCCCCCCcCEEEEecccceecccccccccCCCcccccEEEeeeeEe
Confidence 3555666678889999999999999998774 455443 44568999999999988886644432 2 34788888764
Q ss_pred EEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995 585 VVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT 622 (622)
Q Consensus 585 ~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~ 622 (622)
+ +| |..|||++.+.|.++||.|+++
T Consensus 176 ~-------~g------r~~mPvsiqvhHa~~DG~Hv~~ 200 (206)
T PF00302_consen 176 E-------NG------RLLMPVSIQVHHALVDGYHVGQ 200 (206)
T ss_dssp E-------TT------EEEEEEEEEEETTT--HHHHHH
T ss_pred E-------CC------EEEEEEEEEEecccccHHHHHH
Confidence 2 23 6789999999999999998764
No 31
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=99.66 E-value=3.4e-16 Score=169.60 Aligned_cols=78 Identities=37% Similarity=0.632 Sum_probs=74.9
Q ss_pred eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995 87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (622)
Q Consensus 87 ~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~ 165 (622)
++|+||++|++|+||+|++|+|++||.|++||+||+|||||++++|+|+++|+|.++++++|+. |++|++|++|+.++
T Consensus 1 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~-v~vG~~l~~i~~~~ 78 (403)
T TIGR01347 1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDT-VESGQVLAILEEGN 78 (403)
T ss_pred CeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCE-eCCCCEEEEEecCC
Confidence 3689999999999999999999999999999999999999999999999999999999999999 99999999997543
No 32
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.65 E-value=4.2e-16 Score=166.85 Aligned_cols=78 Identities=37% Similarity=0.632 Sum_probs=75.5
Q ss_pred ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995 86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED 164 (622)
Q Consensus 86 ~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~ 164 (622)
.++|+||++|++|+||+|++|+|++||.|++||+||+||+||++++|+||.+|+|.++++++|+. |.+|++|+.|++.
T Consensus 2 ~~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~-v~~g~~l~~i~~~ 79 (371)
T PRK14875 2 ITPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGET-LPVGALLAVVADA 79 (371)
T ss_pred ceEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCE-eCCCCEEEEEecC
Confidence 47899999999999999999999999999999999999999999999999999999999999999 9999999999654
No 33
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.65 E-value=3e-16 Score=130.32 Aligned_cols=74 Identities=42% Similarity=0.672 Sum_probs=71.6
Q ss_pred eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (622)
Q Consensus 213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i 287 (622)
.++.+|.+|..+.++++.+|++++||.|++||+||+||+||+.++|+||.+|+|.++++++|+. |..|++|+.|
T Consensus 1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~-V~~G~~l~~I 74 (74)
T PF00364_consen 1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDT-VEVGQVLAII 74 (74)
T ss_dssp EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEE-EETTSEEEEE
T ss_pred CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCE-ECCCCEEEEC
Confidence 3689999999999999999999999999999999999999999999999999999999999999 9999999986
No 34
>PRK06748 hypothetical protein; Validated
Probab=99.63 E-value=1.2e-15 Score=128.14 Aligned_cols=63 Identities=24% Similarity=0.286 Sum_probs=60.8
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEe-cceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEc
Q 006995 100 QGNIAKWRKKEGDKIEIGDILCEIET-DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE 163 (622)
Q Consensus 100 eg~i~~w~v~~Gd~V~~g~~l~~vet-dK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~ 163 (622)
-|+|.+|+|++||.|++||+|++||| ||++++|+||.+|+|.++++++||. |++|++|+.|++
T Consensus 12 ~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~-V~vG~~la~I~~ 75 (83)
T PRK06748 12 YGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQA-IADQKLLITVRD 75 (83)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCE-ECCCCEEEEEEC
Confidence 48999999999999999999999999 9999999999999999999999999 999999999953
No 35
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.61 E-value=1.8e-15 Score=162.07 Aligned_cols=119 Identities=29% Similarity=0.417 Sum_probs=102.0
Q ss_pred eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCCC
Q 006995 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG 292 (622)
Q Consensus 213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~~ 292 (622)
.++.||++|++|++|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+. |++|++|+.+.....
T Consensus 3 ~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~-v~~g~~l~~i~~~~~ 81 (371)
T PRK14875 3 TPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGET-LPVGALLAVVADAEV 81 (371)
T ss_pred eEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCE-eCCCCEEEEEecCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999 999999999953211
Q ss_pred CcCCcCCCCCCCcccCCCCCCCCCCccccccccCCCccCChhHHhHHHHcCCCcccccccCCCCeeechhh
Q 006995 293 DVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDV 363 (622)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV 363 (622)
.. ......++|++++++++ ++++....+++..+.+...++
T Consensus 82 ~~------------------------------~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i 121 (371)
T PRK14875 82 SD------------------------------AEIDAFIAPFARRFAPE-GIDEEDAGPAPRKARIGGRTV 121 (371)
T ss_pred Cc------------------------------ccccccccchhhhcccc-ccchhhccCCCCcceEcCcEE
Confidence 00 00112468899999988 999999999888877765555
No 36
>PRK13757 chloramphenicol acetyltransferase; Provisional
Probab=99.61 E-value=1.4e-14 Score=144.34 Aligned_cols=182 Identities=14% Similarity=0.092 Sum_probs=141.5
Q ss_pred hHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCC
Q 006995 418 RKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDA 497 (622)
Q Consensus 418 rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~ 497 (622)
||.--...... --|+|.++.+||+|.|+++.|+. +++|+..+++++++|++++|+|+.++.+++ ++.|+.
T Consensus 18 RkehF~~f~~~--~~~~fsiT~~iDiT~l~~~~K~~------~~~fy~~~ly~v~kavN~~~eFR~r~~~~~--v~~~D~ 87 (219)
T PRK13757 18 RKEHFEAFQSV--AQCTYNQTVQLDITAFLKTVKKN------KHKFYPAFIHILARLMNAHPEFRMAMKDGE--LVIWDS 87 (219)
T ss_pred cHHHHHHHhcC--CCCceEEEEEEEHHHHHHHHHHc------CCChHHHHHHHHHHHHhcCHhHheEEECCe--EEEEeE
Confidence 44444443332 23459999999999999998877 789999999999999999999999997654 999999
Q ss_pred ccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCC-CCCCccCCCcEEEEeCCCCCccceeeecC-CCce-
Q 006995 498 IDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGK-LAPHEFQGGTFSISNLGMFPVDQFCAIIN-PPQA- 574 (622)
Q Consensus 498 vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~-l~~~d~~ggtftISNlG~~G~~~~tpii~-~pq~- 574 (622)
++.+.+|..+++-+.-.+.-...-++.++.+.....++++++.. +-+.....-.|.||++-++.-++|+.-++ ...-
T Consensus 88 i~ps~Ti~~~~~~tFs~~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~n~~~iS~iPW~sFTs~~~~~~~~~~~~ 167 (219)
T PRK13757 88 VHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFF 167 (219)
T ss_pred EeeeEEEEeCCCceEEEEEecCcCCHHHHHHHHHHHHHHHhcCccccCCCCCCCeEEeecccCcCccccccccccCCCCc
Confidence 99999999777657778888889999999999999999998864 54544455678888887777666654333 2222
Q ss_pred -EEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995 575 -GILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT 622 (622)
Q Consensus 575 -ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~ 622 (622)
-++..|+..++ +| |.+||||+.+.|.+|||.|+++
T Consensus 168 ~P~it~GKy~~~-------~g------r~~mPvSvqvHHa~~DG~Hv~~ 203 (219)
T PRK13757 168 APVFTMGKYYTQ-------GD------KVLMPLAIQVHHAVCDGFHVGR 203 (219)
T ss_pred CcEEEeeceEEE-------CC------EEEEEEEEEEehhccchHHHHH
Confidence 36777776531 22 5689999999999999999864
No 37
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=99.60 E-value=2.4e-15 Score=170.53 Aligned_cols=82 Identities=34% Similarity=0.526 Sum_probs=77.6
Q ss_pred CcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEc
Q 006995 84 PSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE 163 (622)
Q Consensus 84 ~~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~ 163 (622)
.+.++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++|+. |++|++|++|++
T Consensus 133 ~~~~~~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~-v~vG~~l~~i~~ 211 (590)
T TIGR02927 133 GAATDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDT-VDVGAEIAKIGD 211 (590)
T ss_pred CCceEEEcCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCE-ecCCCEEEEEec
Confidence 3458999999999999999999999999999999999999999999999999999999999999999 999999999976
Q ss_pred CCc
Q 006995 164 DAD 166 (622)
Q Consensus 164 ~~~ 166 (622)
+++
T Consensus 212 ~~~ 214 (590)
T TIGR02927 212 AGA 214 (590)
T ss_pred CCC
Confidence 543
No 38
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.58 E-value=9.4e-15 Score=160.77 Aligned_cols=85 Identities=54% Similarity=0.890 Sum_probs=77.7
Q ss_pred ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995 86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (622)
Q Consensus 86 ~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~ 165 (622)
.++|+||++|++|+||+|.+|+|++||.|++||+||+|||||++++|+|+.+|+|.++++++|+.+|++|++|+.|++++
T Consensus 2 ~~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~ 81 (464)
T PRK11892 2 AIEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEG 81 (464)
T ss_pred CcceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCC
Confidence 35899999999999999999999999999999999999999999999999999999999999963399999999997665
Q ss_pred ccccc
Q 006995 166 DDIQH 170 (622)
Q Consensus 166 ~~~~~ 170 (622)
++..+
T Consensus 82 ~~~~~ 86 (464)
T PRK11892 82 ESASD 86 (464)
T ss_pred Ccccc
Confidence 54443
No 39
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=99.55 E-value=1.8e-14 Score=162.24 Aligned_cols=79 Identities=23% Similarity=0.344 Sum_probs=75.6
Q ss_pred ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995 86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (622)
Q Consensus 86 ~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~ 165 (622)
.+.|+||++|+ |+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+. |.+|++|+.|+.++
T Consensus 116 ~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~-v~vG~~l~~i~~~~ 193 (546)
T TIGR01348 116 VQEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDS-VPTGDLILTLSVAG 193 (546)
T ss_pred ceEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCE-ecCCCEEEEEecCC
Confidence 47999999999 99999999999999999999999999999999999999999999999999999 99999999997654
Q ss_pred c
Q 006995 166 D 166 (622)
Q Consensus 166 ~ 166 (622)
+
T Consensus 194 ~ 194 (546)
T TIGR01348 194 S 194 (546)
T ss_pred C
Confidence 3
No 40
>PRK06748 hypothetical protein; Validated
Probab=99.55 E-value=1.5e-14 Score=121.56 Aligned_cols=63 Identities=22% Similarity=0.278 Sum_probs=60.5
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEec-ccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIET-DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vet-dK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~ 289 (622)
.|+|.+|+|++||+|++||+|++||| ||++++|+||.+|+|.+|++++|+. |++|++|++|.+
T Consensus 12 ~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~-V~vG~~la~I~~ 75 (83)
T PRK06748 12 YGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQA-IADQKLLITVRD 75 (83)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCE-ECCCCEEEEEEC
Confidence 37999999999999999999999999 9999999999999999999999999 999999999953
No 41
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=99.53 E-value=1.7e-14 Score=157.19 Aligned_cols=77 Identities=30% Similarity=0.486 Sum_probs=73.5
Q ss_pred EecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCCc
Q 006995 89 VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDAD 166 (622)
Q Consensus 89 ~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~~ 166 (622)
|+||+||++|+||+|++|+|++||.|++||+||+||+||+.++++|+++|+|.++++++|+. |.+|++|+.|+.+++
T Consensus 1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~-v~vG~~l~~i~~~~~ 77 (416)
T PLN02528 1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDI-VKVGETLLKIMVEDS 77 (416)
T ss_pred CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCE-eCCCCEEEEEeccCC
Confidence 57999999999999999999999999999999999999999999999999999999999999 999999999975443
No 42
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.52 E-value=5.2e-14 Score=115.93 Aligned_cols=62 Identities=26% Similarity=0.353 Sum_probs=60.1
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (622)
Q Consensus 100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~ 162 (622)
-|+|.+|+|++||+|++||+||+||+||+.++|.||.+|+|.++++++|+. |..|++|+.|+
T Consensus 10 ~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~-V~~G~~l~~i~ 71 (71)
T PRK05889 10 VASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDV-IQAGDLIAVIS 71 (71)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCE-ECCCCEEEEEC
Confidence 499999999999999999999999999999999999999999999999999 99999999884
No 43
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=99.50 E-value=1.5e-13 Score=150.50 Aligned_cols=80 Identities=45% Similarity=0.666 Sum_probs=76.4
Q ss_pred ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995 86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (622)
Q Consensus 86 ~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~ 165 (622)
...++||++|++|+||+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+. |.+|++|+.|.+.+
T Consensus 2 ~~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~-v~~G~~l~~i~~~~ 80 (411)
T PRK11856 2 MFEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDV-VPVGSVIAVIEEEG 80 (411)
T ss_pred CeeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCE-eCCCCEEEEEecCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999 99999999997655
Q ss_pred c
Q 006995 166 D 166 (622)
Q Consensus 166 ~ 166 (622)
+
T Consensus 81 ~ 81 (411)
T PRK11856 81 E 81 (411)
T ss_pred C
Confidence 4
No 44
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.49 E-value=8.3e-13 Score=145.50 Aligned_cols=82 Identities=56% Similarity=0.918 Sum_probs=75.8
Q ss_pred eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCCC
Q 006995 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG 292 (622)
Q Consensus 213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~~ 292 (622)
.++.||++|++|++|+|.+|+|++||.|++||+|++|||||++++++|+.+|+|.+|++++|+.+|++|++|++|.++++
T Consensus 3 ~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~~ 82 (464)
T PRK11892 3 IEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEGE 82 (464)
T ss_pred cceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCCC
Confidence 37899999999999999999999999999999999999999999999999999999999999634999999999976554
Q ss_pred Cc
Q 006995 293 DV 294 (622)
Q Consensus 293 ~~ 294 (622)
+.
T Consensus 83 ~~ 84 (464)
T PRK11892 83 SA 84 (464)
T ss_pred cc
Confidence 33
No 45
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=99.48 E-value=1.4e-13 Score=155.71 Aligned_cols=79 Identities=32% Similarity=0.464 Sum_probs=75.7
Q ss_pred cceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995 85 SHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED 164 (622)
Q Consensus 85 ~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~ 164 (622)
...+|+||+||+ |+||+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+. |.+|++|+.|.+.
T Consensus 118 ~~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~-v~~G~~l~~i~~~ 195 (547)
T PRK11855 118 GVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDK-VSVGSLLVVIEVA 195 (547)
T ss_pred CceEEecCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCE-ecCCCEEEEEecC
Confidence 358999999999 99999999999999999999999999999999999999999999999999999 9999999999765
Q ss_pred C
Q 006995 165 A 165 (622)
Q Consensus 165 ~ 165 (622)
+
T Consensus 196 ~ 196 (547)
T PRK11855 196 A 196 (547)
T ss_pred C
Confidence 3
No 46
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.46 E-value=2.6e-13 Score=112.12 Aligned_cols=72 Identities=40% Similarity=0.679 Sum_probs=69.6
Q ss_pred EecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995 89 VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (622)
Q Consensus 89 ~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i 161 (622)
|.+|+++.++.+|++.+|++++||.|++||+|+++|+||+.++|.||++|+|.+++.+.|+. +..|+.|+.|
T Consensus 2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~-v~~g~~l~~i 73 (73)
T cd06663 2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTK-VEGDTPLVKI 73 (73)
T ss_pred cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEC
Confidence 67899999999999999999999999999999999999999999999999999999999999 9999999864
No 47
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=99.45 E-value=1.9e-13 Score=149.90 Aligned_cols=77 Identities=70% Similarity=1.152 Sum_probs=73.7
Q ss_pred EecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995 89 VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (622)
Q Consensus 89 ~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~ 165 (622)
|+||++|++|+||+|++|+|++||.|++||+||+|||||++++|+|+++|+|.++++++|+..|++|++|++|++++
T Consensus 2 i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~ 78 (435)
T TIGR01349 2 ITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEK 78 (435)
T ss_pred cccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccC
Confidence 78999999999999999999999999999999999999999999999999999999999986699999999997544
No 48
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.41 E-value=8.8e-13 Score=108.26 Aligned_cols=61 Identities=31% Similarity=0.336 Sum_probs=59.7
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995 101 GNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (622)
Q Consensus 101 g~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~ 162 (622)
|+|.+|++++||+|++||+|++||+||+.+++.++.+|+|.++++++||. |..|++|+.|+
T Consensus 10 G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~-V~~g~~l~~ie 70 (70)
T PRK08225 10 GNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDF-VNEGDVLLEIE 70 (70)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCE-ECCCCEEEEEC
Confidence 89999999999999999999999999999999999999999999999999 99999999884
No 49
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.39 E-value=1.4e-12 Score=121.65 Aligned_cols=70 Identities=27% Similarity=0.433 Sum_probs=63.7
Q ss_pred ceeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEe
Q 006995 212 RVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV 288 (622)
Q Consensus 212 ~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~ 288 (622)
...+..|.. |++.+.+|++||+|++||+||.||.||+.++|+||.+|+|.+|++++|+. |+.||+|+.|.
T Consensus 70 ~~~V~SPm~------Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~-Ve~G~~L~~I~ 139 (140)
T COG0511 70 GTQVTSPMV------GTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDP-VEYGDPLAVIE 139 (140)
T ss_pred CceEecCcc------eEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCc-cCCCCEEEEec
Confidence 345555543 68999999999999999999999999999999999999999999999999 99999999984
No 50
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.38 E-value=1.2e-12 Score=122.11 Aligned_cols=62 Identities=32% Similarity=0.474 Sum_probs=60.3
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (622)
Q Consensus 100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~ 162 (622)
-|++.+.||++||+|++||+||.||.||+..+|.||.+|+|++|++++||. |..||+|+.|.
T Consensus 78 ~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~-Ve~G~~L~~I~ 139 (140)
T COG0511 78 VGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDP-VEYGDPLAVIE 139 (140)
T ss_pred ceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCc-cCCCCEEEEec
Confidence 489999999999999999999999999999999999999999999999999 99999999984
No 51
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.36 E-value=2.4e-12 Score=106.06 Aligned_cols=61 Identities=25% Similarity=0.358 Sum_probs=59.3
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i 287 (622)
.|+|.+|++++||+|++||+|+++|+||+.++|.||.+|+|.++++++|+. |+.|++|+.|
T Consensus 10 ~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~-V~~G~~l~~i 70 (71)
T PRK05889 10 VASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDV-IQAGDLIAVI 70 (71)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCE-ECCCCEEEEE
Confidence 389999999999999999999999999999999999999999999999999 9999999987
No 52
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.30 E-value=1.7e-11 Score=112.18 Aligned_cols=61 Identities=21% Similarity=0.234 Sum_probs=59.2
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i 287 (622)
.|+|.+|++++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+. |..|++|+.|
T Consensus 69 ~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~-V~~G~~L~~I 129 (130)
T PRK06549 69 PGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQV-VNPGDGLITI 129 (130)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCE-eCCCCEEEEe
Confidence 479999999999999999999999999999999999999999999999999 9999999986
No 53
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.30 E-value=8.5e-12 Score=114.07 Aligned_cols=61 Identities=25% Similarity=0.252 Sum_probs=59.6
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (622)
Q Consensus 100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i 161 (622)
.|+|.+|++++||.|++||+|+++|+||+..+|.||++|+|.++++++||. |..|++|+.|
T Consensus 69 ~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~-V~~G~~L~~I 129 (130)
T PRK06549 69 PGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQV-VNPGDGLITI 129 (130)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCE-eCCCCEEEEe
Confidence 589999999999999999999999999999999999999999999999999 9999999987
No 54
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.29 E-value=1.1e-11 Score=102.38 Aligned_cols=72 Identities=38% Similarity=0.652 Sum_probs=68.6
Q ss_pred eecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995 215 LEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (622)
Q Consensus 215 ~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i 287 (622)
+.+|+++..+.+|++.+|++++||+|++||+|+.+|++|+..+|.||.+|+|.+++++.|+. +..|+.|+.+
T Consensus 2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~-v~~g~~l~~i 73 (73)
T cd06663 2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTK-VEGDTPLVKI 73 (73)
T ss_pred cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEC
Confidence 56799999999999999999999999999999999999999999999999999999999998 9999999864
No 55
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.27 E-value=6.9e-11 Score=111.34 Aligned_cols=61 Identities=31% Similarity=0.473 Sum_probs=59.1
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i 287 (622)
.|+|.+|++++||.|++||+|+++|+||+.++|.|+.+|+|.++++++|+. |..|++|+.|
T Consensus 92 ~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~-V~~Gq~L~~I 152 (153)
T PRK05641 92 PGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDT-VDTGQPLIEL 152 (153)
T ss_pred CeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCE-ECCCCEEEEe
Confidence 369999999999999999999999999999999999999999999999999 9999999987
No 56
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.25 E-value=2e-11 Score=114.93 Aligned_cols=61 Identities=33% Similarity=0.514 Sum_probs=59.5
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (622)
Q Consensus 100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i 161 (622)
.|+|.+|+|++||+|++||+|+++|+||+..+|.|+++|+|.++++++||. |..|++|+.|
T Consensus 92 ~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~-V~~Gq~L~~I 152 (153)
T PRK05641 92 PGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDT-VDTGQPLIEL 152 (153)
T ss_pred CeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCE-ECCCCEEEEe
Confidence 489999999999999999999999999999999999999999999999999 9999999987
No 57
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.24 E-value=2.3e-11 Score=99.78 Aligned_cols=61 Identities=28% Similarity=0.331 Sum_probs=59.3
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i 287 (622)
.|+|.+|++++||+|++||+|+++|+||+.+++.++.+|+|.++++++|+. |..|++|+.|
T Consensus 9 ~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~-V~~g~~l~~i 69 (70)
T PRK08225 9 AGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDF-VNEGDVLLEI 69 (70)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCE-ECCCCEEEEE
Confidence 389999999999999999999999999999999999999999999999999 9999999987
No 58
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=99.24 E-value=4.9e-12 Score=91.03 Aligned_cols=37 Identities=46% Similarity=0.676 Sum_probs=33.2
Q ss_pred ccCChhHHhHHHHcCCCcccccccCCCCeeechhhHH
Q 006995 329 TKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLA 365 (622)
Q Consensus 329 ~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~ 365 (622)
+.+||+||+||+|+|||+++|+|||++|||+++||++
T Consensus 3 i~asP~ar~la~e~gidl~~v~gtG~~GrI~k~Dv~a 39 (39)
T PF02817_consen 3 IKASPAARKLAAELGIDLSQVKGTGPGGRITKEDVLA 39 (39)
T ss_dssp CCCSHHHHHHHHHTT--GGGSSSSSTTSBBCHHHHHH
T ss_pred cccCHHHHHHHHHcCCCcccccccCCCCcEeHHHhhC
Confidence 4689999999999999999999999999999999985
No 59
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]
Probab=99.24 E-value=1.3e-10 Score=111.36 Aligned_cols=169 Identities=16% Similarity=0.123 Sum_probs=132.0
Q ss_pred CCcceEEEEeeeechHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCCccEEEEEecCCC
Q 006995 430 QNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKG 509 (622)
Q Consensus 430 ~~iP~~~~~~evdvt~l~~~rk~~k~~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~G 509 (622)
...||+.++.+.|++.+..+.|+. +++|+..+++|+.+++++|++++.++.++. .++++.+++.++|.++++
T Consensus 26 ~~~p~y~i~~~LDvtn~~~~vk~~------~l~Ff~a~l~avtr~~n~~~EFRlr~~~~~--~~~~d~v~p~~tv~~~~~ 97 (219)
T COG4845 26 LQYPHYDINLQLDVTNFYGYVKEN------GLSFFPALLYAVTRCANRHQEFRLRIQNGQ--LGYWDNVPPMYTVFHGET 97 (219)
T ss_pred cccceEeeeeeeehhHHHHHHHHc------CCcchHHHHHHHHHHhcccHHhHhhhcCCe--eEEeecCCcceEEEcCCC
Confidence 578999999999999999998877 789999999999999999999999999865 999999999999999887
Q ss_pred eEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcE-EEEeCCCCCccceeeecCCCc------eEEEEeccc
Q 006995 510 LMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTF-SISNLGMFPVDQFCAIINPPQ------AGILAVGRG 582 (622)
Q Consensus 510 L~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtf-tISNlG~~G~~~~tpii~~pq------~ail~vG~~ 582 (622)
-+.-++.-....++.++++....-+++++++.--.. .+.++ -+-++|.+.+..|+.+-.+=+ .-|+.-|+-
T Consensus 98 e~Fs~l~~e~~~~~~dF~q~y~~~ie~~~~~~~~~~--k~~~~~~~~~~s~lPWlsFtslS~~~~~~k~~~~PiF~~Grf 175 (219)
T COG4845 98 ETFSVLWTEYQEDYEDFAQLYIEDIEQYGANNYERA--KDPTPCDVYIFSNLPWLSFTSLSHHYRRNKIYGQPIFYAGRF 175 (219)
T ss_pred cEEEEEeccccccHHHHHHHHHHHHHHhccCccccc--CCCCcceeEEeccccccceeeeeeeccCCccccceeEeecce
Confidence 677788878999999999999998999888763211 22222 344455556666666532211 124555554
Q ss_pred eeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCC
Q 006995 583 NQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGG 621 (622)
Q Consensus 583 ~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa 621 (622)
. ++|| .-.|||++.+.|..|||-+.+
T Consensus 176 ~-------~~~G------kl~lPlavq~hHA~vDG~Hi~ 201 (219)
T COG4845 176 Y-------EEDG------KLTLPLAVQAHHANVDGFHIG 201 (219)
T ss_pred e-------ccCC------eEEEeEEEEecccccchhhHH
Confidence 3 2555 246999999999999998865
No 60
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=99.21 E-value=6.6e-11 Score=118.45 Aligned_cols=56 Identities=34% Similarity=0.507 Sum_probs=54.7
Q ss_pred EeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995 231 KWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (622)
Q Consensus 231 ~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i 287 (622)
.|+|++||.|++||+|++||+||+.++|+++.+|+|.+|++++|+. |.+|++|+.|
T Consensus 217 ~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~-V~vGqpL~~I 272 (274)
T PLN02983 217 PPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKP-VSVDTPLFVI 272 (274)
T ss_pred cceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCE-eCCCCEEEEe
Confidence 3999999999999999999999999999999999999999999999 9999999988
No 61
>PRK07051 hypothetical protein; Validated
Probab=99.21 E-value=5.9e-11 Score=100.08 Aligned_cols=61 Identities=30% Similarity=0.379 Sum_probs=58.8
Q ss_pred EEEEE-------EEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995 101 GNIAK-------WRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (622)
Q Consensus 101 g~i~~-------w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~ 162 (622)
|++.+ |+|++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+. |..|++|+.|+
T Consensus 12 g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~-V~~G~~l~~i~ 79 (80)
T PRK07051 12 GTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEP-VEAGQVLARIE 79 (80)
T ss_pred eEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCE-ECCCCEEEEEe
Confidence 67777 999999999999999999999999999999999999999999999 99999999985
No 62
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.19 E-value=1e-10 Score=94.22 Aligned_cols=62 Identities=35% Similarity=0.498 Sum_probs=59.5
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (622)
Q Consensus 99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i 161 (622)
-.|+|.+|++++||.|++||+|+++|++|...+|.||++|+|.+++++.|+. |..|++|+.|
T Consensus 6 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~-V~~G~~l~~i 67 (67)
T cd06850 6 MPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQ-VEAGQLLVVI 67 (67)
T ss_pred ccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCE-ECCCCEEEEC
Confidence 4699999999999999999999999999999999999999999999999999 9999999875
No 63
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=99.17 E-value=6e-11 Score=118.74 Aligned_cols=62 Identities=31% Similarity=0.489 Sum_probs=59.0
Q ss_pred eEEEEE-------EEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995 100 QGNIAK-------WRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (622)
Q Consensus 100 eg~i~~-------w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~ 162 (622)
.|++.+ |+|++||.|++||+||+||+||+.++|+++++|+|.++++++||. |.+|++|+.|+
T Consensus 205 aGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~-V~vGqpL~~IE 273 (274)
T PLN02983 205 AGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKP-VSVDTPLFVIE 273 (274)
T ss_pred CeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCE-eCCCCEEEEec
Confidence 367777 999999999999999999999999999999999999999999999 99999999984
No 64
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.16 E-value=7.2e-11 Score=111.99 Aligned_cols=60 Identities=33% Similarity=0.515 Sum_probs=58.0
Q ss_pred EEEEE-------EEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995 101 GNIAK-------WRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (622)
Q Consensus 101 g~i~~-------w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i 161 (622)
|++.+ |+|++||.|++||+||.||+||+..+|+|+.+|+|.+++++.|+. |..|++|+.|
T Consensus 89 G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~-V~~Gq~L~~i 155 (156)
T TIGR00531 89 GTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQP-VEYGQPLIVI 155 (156)
T ss_pred EEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCE-ECCCCEEEEE
Confidence 77775 999999999999999999999999999999999999999999999 9999999987
No 65
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=99.11 E-value=6.6e-11 Score=120.81 Aligned_cols=79 Identities=23% Similarity=0.430 Sum_probs=74.7
Q ss_pred CceeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995 211 PRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED 290 (622)
Q Consensus 211 ~~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~ 290 (622)
....+++-++|+++.|.++.+|+|||||+|+..|.||||++||++++|++.++|+|++|+...++. ..||++|..+..+
T Consensus 63 gvv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddi-a~VGk~Lvd~eve 141 (474)
T KOG0558|consen 63 GVVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDI-AKVGKPLVDLEVE 141 (474)
T ss_pred ceEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhh-hHhCcceeeeeec
Confidence 357889999999999999999999999999999999999999999999999999999999999999 9999999877543
No 66
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.11 E-value=3.1e-10 Score=107.66 Aligned_cols=74 Identities=27% Similarity=0.400 Sum_probs=61.7
Q ss_pred eeeecCCCCCCccc-ceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995 213 VVLEMPALSPTMNQ-GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (622)
Q Consensus 213 ~~~~~P~l~~~~~e-g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i 287 (622)
..+..|..|-.+.. ..-..|+|++||.|++||+||.||+||+.++|+|+.+|+|.+|++++|+. |..|++|+.|
T Consensus 81 ~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~-V~~Gq~L~~i 155 (156)
T TIGR00531 81 HFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQP-VEYGQPLIVI 155 (156)
T ss_pred CEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCE-ECCCCEEEEE
Confidence 34666655522211 12234999999999999999999999999999999999999999999999 9999999987
No 67
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.11 E-value=1.8e-10 Score=109.19 Aligned_cols=60 Identities=33% Similarity=0.525 Sum_probs=57.6
Q ss_pred EEEEE-------EEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995 101 GNIAK-------WRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (622)
Q Consensus 101 g~i~~-------w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i 161 (622)
|++.. |||++||.|++||+||.||+||+..+|+|+++|+|.+++++.|+. |..|++|+.|
T Consensus 88 G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~-V~~Gq~L~~i 154 (155)
T PRK06302 88 GTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQP-VEFGQPLFVI 154 (155)
T ss_pred EEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCE-eCCCCEEEEe
Confidence 66765 999999999999999999999999999999999999999999999 9999999987
No 68
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=99.11 E-value=7.5e-10 Score=89.30 Aligned_cols=73 Identities=56% Similarity=0.878 Sum_probs=70.2
Q ss_pred EEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995 88 VVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (622)
Q Consensus 88 ~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i 161 (622)
++.+|+++.+..+|+|.+|+++.|+.|..|++|+.++++|+...+.++.+|++.+.++.+|+. +..|++|+.|
T Consensus 2 ~~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~-v~~g~~l~~~ 74 (74)
T cd06849 2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDT-VPVGQVIAVI 74 (74)
T ss_pred EEECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCE-eCCCCEEEEC
Confidence 478999999999999999999999999999999999999999999999999999999999999 9999999874
No 69
>PRK07051 hypothetical protein; Validated
Probab=99.07 E-value=6.1e-10 Score=93.93 Aligned_cols=57 Identities=30% Similarity=0.345 Sum_probs=55.1
Q ss_pred EeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEe
Q 006995 231 KWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV 288 (622)
Q Consensus 231 ~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~ 288 (622)
.|++++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+. |..|++|+.+.
T Consensus 23 ~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~-V~~G~~l~~i~ 79 (80)
T PRK07051 23 PPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEP-VEAGQVLARIE 79 (80)
T ss_pred CCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCE-ECCCCEEEEEe
Confidence 3999999999999999999999999999999999999999999999 99999999984
No 70
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=99.04 E-value=5.7e-10 Score=126.05 Aligned_cols=63 Identities=29% Similarity=0.413 Sum_probs=61.0
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEc
Q 006995 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE 163 (622)
Q Consensus 100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~ 163 (622)
.|+|++|+|++||.|++||+|++||+||++.+|+||++|+|.++++++|+. |.+|++|+.|++
T Consensus 533 ~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~-V~~G~~L~~I~~ 595 (596)
T PRK14042 533 PGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDK-VTPGQVLIRVEV 595 (596)
T ss_pred ceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCE-ECCCCEEEEEeC
Confidence 399999999999999999999999999999999999999999999999999 999999999963
No 71
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=98.99 E-value=1.8e-09 Score=102.49 Aligned_cols=74 Identities=27% Similarity=0.390 Sum_probs=62.9
Q ss_pred eeeecCCCCCCccc-ceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995 213 VVLEMPALSPTMNQ-GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (622)
Q Consensus 213 ~~~~~P~l~~~~~e-g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i 287 (622)
..+..|..|-.+.. ..-..|+|++||.|++||+||.||+||+.++|+|+.+|+|.++++++|+. |..|++|+.|
T Consensus 80 ~~v~sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~-V~~Gq~L~~i 154 (155)
T PRK06302 80 HVVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQP-VEFGQPLFVI 154 (155)
T ss_pred CEEeCCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCE-eCCCCEEEEe
Confidence 45666766533221 22335999999999999999999999999999999999999999999999 9999999987
No 72
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=98.97 E-value=1.9e-09 Score=86.76 Aligned_cols=61 Identities=31% Similarity=0.474 Sum_probs=58.4
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i 287 (622)
.|.+.+|++++||.|++||+|++++++|...+|.||.+|+|.+++++.|+. |..|++|+.|
T Consensus 7 ~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~-V~~G~~l~~i 67 (67)
T cd06850 7 PGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQ-VEAGQLLVVI 67 (67)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCE-ECCCCEEEEC
Confidence 588999999999999999999999999999999999999999999999999 9999999864
No 73
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=98.94 E-value=9e-09 Score=116.41 Aligned_cols=62 Identities=29% Similarity=0.440 Sum_probs=60.1
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEe
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV 288 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~ 288 (622)
.|+|++|+|++||.|++||+|++||+||++++|.||.+|+|.++++++|+. |.+|++|+.|.
T Consensus 533 ~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~-V~~G~~L~~I~ 594 (596)
T PRK14042 533 PGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDK-VTPGQVLIRVE 594 (596)
T ss_pred ceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCE-ECCCCEEEEEe
Confidence 379999999999999999999999999999999999999999999999999 99999999984
No 74
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=98.94 E-value=1.7e-09 Score=131.79 Aligned_cols=62 Identities=29% Similarity=0.374 Sum_probs=60.3
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (622)
Q Consensus 100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~ 162 (622)
.|+|.+|+|++||+|++||+||+||+||++++|+||.+|+|+++++++||. |.+|++|+.|+
T Consensus 1140 ~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~-V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1140 AGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDM-VDAGDIVAVLE 1201 (1201)
T ss_pred eEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCE-eCCCCEEEEeC
Confidence 499999999999999999999999999999999999999999999999999 99999999874
No 75
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=98.85 E-value=4.2e-09 Score=119.35 Aligned_cols=58 Identities=33% Similarity=0.512 Sum_probs=56.3
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeE
Q 006995 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPI 158 (622)
Q Consensus 100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l 158 (622)
-|+|++|+|++||.|++||+|++||+||++++|.||.+|+|.++++++||. |.+|++|
T Consensus 525 ~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~-V~~G~~l 582 (582)
T TIGR01108 525 AGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDA-VSVGQVL 582 (582)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCE-eCCCCCC
Confidence 489999999999999999999999999999999999999999999999999 9999975
No 76
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=98.85 E-value=6.1e-09 Score=118.19 Aligned_cols=61 Identities=33% Similarity=0.450 Sum_probs=59.7
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (622)
Q Consensus 100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i 161 (622)
.|+|++|+|++||.|++||+||+||+||+..+|.||.+|+|+++++++|+. |..|++|+.|
T Consensus 532 ~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~-V~~G~~L~~I 592 (593)
T PRK14040 532 AGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDA-VAVGDTLLTL 592 (593)
T ss_pred cEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEe
Confidence 489999999999999999999999999999999999999999999999999 9999999987
No 77
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=98.81 E-value=2.7e-08 Score=80.06 Aligned_cols=73 Identities=51% Similarity=0.807 Sum_probs=69.2
Q ss_pred eeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995 214 VLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (622)
Q Consensus 214 ~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i 287 (622)
++.+|.++.....|++..|+++.|+.+..|++++.++++|+...+.++.+|++.+.++.+|+. +..|++|+.+
T Consensus 2 ~~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~-v~~g~~l~~~ 74 (74)
T cd06849 2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDT-VPVGQVIAVI 74 (74)
T ss_pred EEECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCE-eCCCCEEEEC
Confidence 467899999999999999999999999999999999999999999999999999999999999 9999999864
No 78
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.79 E-value=1e-08 Score=124.01 Aligned_cols=67 Identities=19% Similarity=0.367 Sum_probs=62.0
Q ss_pred CCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995 94 LSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (622)
Q Consensus 94 ~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~ 162 (622)
++..| .|+|++|+|++||.|++||+|++||+||+.++|+||.+|+|+++++++||. |.+|++|+.|+
T Consensus 1077 I~a~~-~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~-V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1077 VGAPM-PGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQ-IDAKDLLLVLE 1143 (1143)
T ss_pred eecCC-CcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCE-ECCCCEEEEeC
Confidence 33443 499999999999999999999999999999999999999999999999999 99999999873
No 79
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.79 E-value=3.2e-08 Score=119.80 Aligned_cols=60 Identities=17% Similarity=0.362 Sum_probs=58.9
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i 287 (622)
|+|++|+|++||.|++||+|++||+||++++|.||.+|+|.++++++|+. |++|++|+.|
T Consensus 1083 G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~-V~~g~~l~~i 1142 (1143)
T TIGR01235 1083 GVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQ-IDAKDLLLVL 1142 (1143)
T ss_pred cEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCE-ECCCCEEEEe
Confidence 89999999999999999999999999999999999999999999999999 9999999987
No 80
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=98.73 E-value=1.7e-08 Score=123.26 Aligned_cols=61 Identities=28% Similarity=0.407 Sum_probs=59.4
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i 287 (622)
.|+|.+|+|++||.|++||+|++||+||++++|.||.+|+|.++++++|+. |.+|++|+.|
T Consensus 1140 ~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~-V~~G~~l~~i 1200 (1201)
T TIGR02712 1140 AGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDM-VDAGDIVAVL 1200 (1201)
T ss_pred eEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCE-eCCCCEEEEe
Confidence 389999999999999999999999999999999999999999999999999 9999999987
No 81
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=98.70 E-value=3.3e-08 Score=112.53 Aligned_cols=62 Identities=32% Similarity=0.486 Sum_probs=60.3
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (622)
Q Consensus 100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~ 162 (622)
.|+|.+|+|++||+|++||+|++||+||+..+|.||.+|+|+++++++|+. |..|++|+.|+
T Consensus 530 ~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~-V~~G~~L~~i~ 591 (592)
T PRK09282 530 PGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDR-VNPGDVLMEIE 591 (592)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCE-eCCCCEEEEec
Confidence 489999999999999999999999999999999999999999999999999 99999999984
No 82
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=98.68 E-value=2.3e-08 Score=113.39 Aligned_cols=58 Identities=31% Similarity=0.492 Sum_probs=55.9
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeE
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPI 284 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l 284 (622)
.|+|++|+|++||.|++||+|++||+||++++|.||.+|+|.+|++++|+. |.+|++|
T Consensus 525 ~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~-V~~G~~l 582 (582)
T TIGR01108 525 AGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDA-VSVGQVL 582 (582)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCE-eCCCCCC
Confidence 379999999999999999999999999999999999999999999999999 9999875
No 83
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=98.65 E-value=4.7e-08 Score=111.04 Aligned_cols=61 Identities=33% Similarity=0.436 Sum_probs=59.2
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i 287 (622)
.|+|++|+|++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+. |..|++|+.|
T Consensus 532 ~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~-V~~G~~L~~I 592 (593)
T PRK14040 532 AGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDA-VAVGDTLLTL 592 (593)
T ss_pred cEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEe
Confidence 379999999999999999999999999999999999999999999999999 9999999987
No 84
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.57 E-value=1.1e-07 Score=115.51 Aligned_cols=62 Identities=27% Similarity=0.423 Sum_probs=60.3
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (622)
Q Consensus 100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~ 162 (622)
.|+|++|+|++||.|++||+|+.+|+||+..+|.||.+|+|+++++++|+. |..|++|+.|+
T Consensus 1084 ~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~-V~~g~~l~~i~ 1145 (1146)
T PRK12999 1084 PGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQ-VEAGDLLVELE 1145 (1146)
T ss_pred eEEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCE-ECCCCEEEEEc
Confidence 399999999999999999999999999999999999999999999999999 99999999984
No 85
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.54 E-value=1.4e-07 Score=102.92 Aligned_cols=62 Identities=29% Similarity=0.471 Sum_probs=60.3
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (622)
Q Consensus 100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~ 162 (622)
.|+|+...|++|++|.+||+|+.+|.|||...|+++.+|+|+++.+.+||. |..|++|+.++
T Consensus 583 pG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~-V~~g~vLve~~ 644 (645)
T COG4770 583 PGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQ-VAVGTVLVEFE 644 (645)
T ss_pred CceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCc-cccCceEEEec
Confidence 489999999999999999999999999999999999999999999999999 99999999985
No 86
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=98.48 E-value=2.5e-07 Score=105.34 Aligned_cols=62 Identities=29% Similarity=0.468 Sum_probs=59.8
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEe
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV 288 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~ 288 (622)
.|+|.+|+|++||.|++||+|++||+||+.++|.||.+|+|.++++++|+. |..|++|+.|.
T Consensus 530 ~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~-V~~G~~L~~i~ 591 (592)
T PRK09282 530 PGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDR-VNPGDVLMEIE 591 (592)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCE-eCCCCEEEEec
Confidence 379999999999999999999999999999999999999999999999999 99999999883
No 87
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.44 E-value=7.3e-07 Score=100.28 Aligned_cols=61 Identities=23% Similarity=0.443 Sum_probs=58.9
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEe
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV 288 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~ 288 (622)
|+|+++.|++||.|++||+|+.+|.|||+..|.+|.+|+|.+++|+.|+. |..|+.|..+.
T Consensus 1088 G~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~-i~~gDLLi~~~ 1148 (1149)
T COG1038 1088 GVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQ-IDGGDLLVVVE 1148 (1149)
T ss_pred CceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCc-cccCceEEEcc
Confidence 79999999999999999999999999999999999999999999999999 99999998763
No 88
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.39 E-value=4.6e-07 Score=99.02 Aligned_cols=61 Identities=26% Similarity=0.439 Sum_probs=59.3
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEe
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV 288 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~ 288 (622)
|+|+.+.|++|+.|.+||+|+.+|.|||++.|.++.+|+|+++.+.+|+. |..|++|+.+.
T Consensus 584 G~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~-V~~g~vLve~~ 644 (645)
T COG4770 584 GTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQ-VAVGTVLVEFE 644 (645)
T ss_pred ceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCc-cccCceEEEec
Confidence 79999999999999999999999999999999999999999999999999 99999999874
No 89
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.38 E-value=4.9e-07 Score=101.64 Aligned_cols=67 Identities=25% Similarity=0.481 Sum_probs=62.3
Q ss_pred CCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995 94 LSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (622)
Q Consensus 94 ~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~ 162 (622)
+|-.|. |.|++.+|++||.|++||+|+.+|.|||+..|.+|++|+|++++++.||. |..|+.|..++
T Consensus 1082 igApmp-G~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~-i~~gDLLi~~~ 1148 (1149)
T COG1038 1082 IGAPMP-GVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQ-IDGGDLLVVVE 1148 (1149)
T ss_pred cCCCCC-CceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCc-cccCceEEEcc
Confidence 444554 88999999999999999999999999999999999999999999999999 99999998874
No 90
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.37 E-value=6.1e-07 Score=109.22 Aligned_cols=61 Identities=23% Similarity=0.396 Sum_probs=59.5
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEe
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV 288 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~ 288 (622)
|+|++|+|++||.|++||+|+.+|+||+.++|.||.+|+|.++++++|+. |..|++|+.|.
T Consensus 1085 G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~-V~~g~~l~~i~ 1145 (1146)
T PRK12999 1085 GSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQ-VEAGDLLVELE 1145 (1146)
T ss_pred EEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCE-ECCCCEEEEEc
Confidence 89999999999999999999999999999999999999999999999999 99999999883
No 91
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=98.21 E-value=2.4e-06 Score=74.57 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=52.0
Q ss_pred eEEecCCCCCCCceEEEEE-EEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCc
Q 006995 87 TVVGMPALSPTMSQGNIAK-WRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150 (622)
Q Consensus 87 ~~~~~p~~g~~~~eg~i~~-w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~ 150 (622)
..+-|-+.+..+ =|+|.. |++++|+.|++||+||+||++|+..+|.||.+|+|.++..+.++.
T Consensus 16 ~~lGlt~~~~~~-lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~ 79 (96)
T cd06848 16 ATVGITDYAQDL-LGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN 79 (96)
T ss_pred EEEeeCHHHHhh-CCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence 445555555443 377877 788889999999999999999999999999999999998877765
No 92
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=98.08 E-value=6.3e-06 Score=91.14 Aligned_cols=67 Identities=27% Similarity=0.380 Sum_probs=62.1
Q ss_pred CCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995 94 LSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (622)
Q Consensus 94 ~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~ 162 (622)
+|--|. |+|++..|++|+.|++||+||.+..|||++-|.||.+|+++++++..|+. +..|+.++.++
T Consensus 1109 igAPMp-G~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~-~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1109 IGAPMP-GTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTK-VEGGDLIVELE 1175 (1176)
T ss_pred ccCCCC-CceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCc-ccccceEEEcc
Confidence 444444 89999999999999999999999999999999999999999999999999 99999998875
No 93
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=97.91 E-value=1.8e-05 Score=69.02 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=44.6
Q ss_pred ceeeE-eeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCe
Q 006995 227 GNIAK-WRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276 (622)
Q Consensus 227 g~i~~-w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~ 276 (622)
|+|.. |++++|+.|++||.|+.||++|+..+|.||.+|+|.+++.+.++.
T Consensus 29 G~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~ 79 (96)
T cd06848 29 GDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN 79 (96)
T ss_pred CCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence 67887 677779999999999999999999999999999999997666554
No 94
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=97.88 E-value=1.8e-05 Score=87.71 Aligned_cols=61 Identities=21% Similarity=0.340 Sum_probs=58.8
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEe
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV 288 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~ 288 (622)
|+|+++.|++|+.|++||+|+.+..|||++-|.||.+|+|.++++..|+. ++-|+.|++++
T Consensus 1115 G~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~-~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1115 GTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTK-VEGGDLIVELE 1175 (1176)
T ss_pred CceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCc-ccccceEEEcc
Confidence 79999999999999999999999999999999999999999999999999 99999988874
No 95
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=97.84 E-value=2.6e-05 Score=92.57 Aligned_cols=68 Identities=24% Similarity=0.403 Sum_probs=63.4
Q ss_pred CceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCCcc
Q 006995 98 MSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADD 167 (622)
Q Consensus 98 ~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~~~ 167 (622)
-+-|++++|+|+.|++|+.||+-+|||.|||.|.+.+..+|+| ++..++|+. +.+|.+|+.+..+...
T Consensus 691 Ps~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~-i~aG~vlakL~lDdpS 758 (2196)
T KOG0368|consen 691 PSPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDA-IEAGSVLAKLTLDDPS 758 (2196)
T ss_pred CCCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCc-cCccceeEEeecCChh
Confidence 3569999999999999999999999999999999999999999 888999999 9999999999876643
No 96
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=97.83 E-value=2.5e-05 Score=69.79 Aligned_cols=50 Identities=22% Similarity=0.318 Sum_probs=41.0
Q ss_pred EEEEEEEe-cCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCc
Q 006995 101 GNIAKWRK-KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150 (622)
Q Consensus 101 g~i~~w~v-~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~ 150 (622)
|+|+.... ++|++|++||++++||++|+..+|.||.+|+|.+++.+..+.
T Consensus 30 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~~ 80 (110)
T TIGR03077 30 GNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALEDD 80 (110)
T ss_pred CCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhC
Confidence 34444433 669999999999999999999999999999999996555543
No 97
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=97.74 E-value=2.3e-05 Score=84.77 Aligned_cols=60 Identities=23% Similarity=0.276 Sum_probs=58.1
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995 101 GNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (622)
Q Consensus 101 g~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i 161 (622)
|.|.+.+||+||.|.+||.||.++.||+...+++|.+|+|+.+.++.|+. |.-|.+|..+
T Consensus 610 G~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~-v~~g~vlv~~ 669 (670)
T KOG0238|consen 610 GIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGAT-VGDGAVLVEF 669 (670)
T ss_pred CeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcc-cCCCceEEEe
Confidence 68999999999999999999999999999999999999999999999999 9999999876
No 98
>PRK00624 glycine cleavage system protein H; Provisional
Probab=97.72 E-value=7e-05 Score=67.29 Aligned_cols=59 Identities=20% Similarity=0.263 Sum_probs=43.6
Q ss_pred eEEecCCCCCCCceEEEEEEEe-cCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEec
Q 006995 87 TVVGMPALSPTMSQGNIAKWRK-KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVP 146 (622)
Q Consensus 87 ~~~~~p~~g~~~~eg~i~~w~v-~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~ 146 (622)
..|-|-+.+... =|+|..... ++|++|++||+||+||++|+..+|.||.+|+|.++.-.
T Consensus 19 ~~vGiT~~a~~~-lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~~ 78 (114)
T PRK00624 19 VRLGLTSKMQEN-LGNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTA 78 (114)
T ss_pred EEEeeCHHHHHh-cCCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHHH
Confidence 344444444331 144544444 56999999999999999999999999999999988443
No 99
>PRK13380 glycine cleavage system protein H; Provisional
Probab=97.64 E-value=7.4e-05 Score=70.02 Aligned_cols=63 Identities=22% Similarity=0.282 Sum_probs=51.5
Q ss_pred eEEecCCCCCCCceEEEEEEEec-CCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCc
Q 006995 87 TVVGMPALSPTMSQGNIAKWRKK-EGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150 (622)
Q Consensus 87 ~~~~~p~~g~~~~eg~i~~w~v~-~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~ 150 (622)
..|-|-++...+- |+|+.+.+. +|++|++||+++.||++|+..+|.||.+|+|.++....-+.
T Consensus 31 ~~vGitd~aq~~l-G~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~~ 94 (144)
T PRK13380 31 VTVGITDYAQTMA-GDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALEDS 94 (144)
T ss_pred EEEecCHHHHHhc-CCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhhC
Confidence 4555555555433 778888876 89999999999999999999999999999999987775543
No 100
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=97.56 E-value=0.00025 Score=77.95 Aligned_cols=68 Identities=16% Similarity=0.211 Sum_probs=59.1
Q ss_pred ceEEEEEEE-ecCCCeeecCCeEEEEEec------------------------------------------------cee
Q 006995 99 SQGNIAKWR-KKEGDKIEIGDILCEIETD------------------------------------------------KAT 129 (622)
Q Consensus 99 ~eg~i~~w~-v~~Gd~V~~g~~l~~vetd------------------------------------------------K~~ 129 (622)
..|.|.+.+ +++||.|++||+|++|++. ...
T Consensus 130 v~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~ 209 (409)
T PRK09783 130 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTR 209 (409)
T ss_pred cCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCc
Confidence 459999999 9999999999999999842 013
Q ss_pred eEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCCcc
Q 006995 130 VEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADD 167 (622)
Q Consensus 130 ~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~~~ 167 (622)
..|.||++|+|.++.+.+|+. |..|++|+.|.+...-
T Consensus 210 ~~I~AP~dGvV~~~~v~~G~~-V~~g~~L~~I~d~~~l 246 (409)
T PRK09783 210 FTLKAPIDGVITAFDLRAGMN-IAKDNVVAKIQGMDPV 246 (409)
T ss_pred EEEECCCCeEEEEEECCCCCE-ECCCCeEEEEEcCCeE
Confidence 579999999999999999999 9999999999776543
No 101
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=97.54 E-value=0.00021 Score=76.13 Aligned_cols=35 Identities=26% Similarity=0.425 Sum_probs=32.0
Q ss_pred eEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995 130 VEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (622)
Q Consensus 130 ~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~ 165 (622)
..|.||++|+|.++.++.|+. |..|++|+.|.+.+
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~~-v~~g~~l~~i~~~~ 239 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQV-VSPGQPLMAVVPAE 239 (334)
T ss_pred cEEEcCCCcEEEEEecCCCCE-eCCCCeeEEEEcCC
Confidence 469999999999999999999 99999999997544
No 102
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=97.53 E-value=0.0002 Score=75.81 Aligned_cols=66 Identities=15% Similarity=0.295 Sum_probs=57.7
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEecce--------------------------------------------------
Q 006995 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA-------------------------------------------------- 128 (622)
Q Consensus 99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~-------------------------------------------------- 128 (622)
..|.|.+++|++||.|++||+|+++++...
T Consensus 54 v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~ 133 (310)
T PRK10559 54 VSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQT 133 (310)
T ss_pred CceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 459999999999999999999999987310
Q ss_pred --------------------eeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995 129 --------------------TVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (622)
Q Consensus 129 --------------------~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~ 165 (622)
...|.||++|+|.++.++.|+. |..|++|+.|.+.+
T Consensus 134 a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~-V~~g~~l~~Iv~~~ 189 (310)
T PRK10559 134 VLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEF-ITRGSTAVALVKQN 189 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCE-ecCCCeeEEEEeCC
Confidence 2458999999999999999999 99999999987543
No 103
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=97.52 E-value=0.00015 Score=64.79 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=40.2
Q ss_pred ceeeEeee-CCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCC
Q 006995 227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEG 274 (622)
Q Consensus 227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g 274 (622)
|.|+-... ++|+.|++||++++||++|+..+|.||.+|+|.+++-+..
T Consensus 30 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~ 78 (110)
T TIGR03077 30 GNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALE 78 (110)
T ss_pred CCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhh
Confidence 45555443 6799999999999999999999999999999999964433
No 104
>PRK01202 glycine cleavage system protein H; Provisional
Probab=97.44 E-value=0.0004 Score=63.82 Aligned_cols=62 Identities=19% Similarity=0.243 Sum_probs=47.2
Q ss_pred EEEEEEE-ecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEE---EecCCCcccc---CCC-eEEEEEc
Q 006995 101 GNIAKWR-KKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKI---LVPEGSKDVP---VGQ-PIAITVE 163 (622)
Q Consensus 101 g~i~~w~-v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~---~~~~g~~~v~---~G~-~l~~i~~ 163 (622)
|+|..+. .++|++|++||+++.||++|+..+|.||.+|+|.++ +....+. +. -|+ -|+.|..
T Consensus 37 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~-ln~~p~~~gWl~~v~~ 106 (127)
T PRK01202 37 GDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPEL-VNEDPYGEGWLFKIKP 106 (127)
T ss_pred CCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHh-hcCCCCCCceEEEEEe
Confidence 3444433 357999999999999999999999999999999999 4444444 44 443 7777754
No 105
>PRK00624 glycine cleavage system protein H; Provisional
Probab=97.43 E-value=0.00023 Score=64.00 Aligned_cols=44 Identities=23% Similarity=0.325 Sum_probs=38.3
Q ss_pred ceeeEeee-CCCCeeecCCeeEEEecccceeeEecCCCeeEEEEe
Q 006995 227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKIL 270 (622)
Q Consensus 227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~ 270 (622)
|.|+-... ++|+.|++||++++||++|+..+|.||.+|+|.+++
T Consensus 32 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN 76 (114)
T PRK00624 32 GNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVN 76 (114)
T ss_pred CCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEH
Confidence 45555444 569999999999999999999999999999999984
No 106
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=97.43 E-value=0.00024 Score=74.85 Aligned_cols=67 Identities=28% Similarity=0.453 Sum_probs=58.2
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEecce--------------------------------------------------
Q 006995 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA-------------------------------------------------- 128 (622)
Q Consensus 99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~-------------------------------------------------- 128 (622)
..|.|.+++|++||.|++||+|+.+++.-.
T Consensus 33 ~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~ 112 (322)
T TIGR01730 33 VAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVE 112 (322)
T ss_pred ccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 458999999999999999999999975311
Q ss_pred ---------------------eeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCCc
Q 006995 129 ---------------------TVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDAD 166 (622)
Q Consensus 129 ---------------------~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~~ 166 (622)
...|.||++|+|..+.++.|+. +..|++|+.|.+.+.
T Consensus 113 ~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~-v~~g~~l~~i~~~~~ 170 (322)
T TIGR01730 113 AAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAY-VTAGQTLATIVDLDP 170 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCce-eCCCCcEEEEEcCCc
Confidence 2469999999999999999999 999999999975443
No 107
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=97.41 E-value=0.00013 Score=79.25 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=57.6
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i 287 (622)
|.|.+++|++||.|++||.|+.++.||+...+.+|.+|++..+.++.|+. |.-|.+|..+
T Consensus 610 G~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~-v~~g~vlv~~ 669 (670)
T KOG0238|consen 610 GIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGAT-VGDGAVLVEF 669 (670)
T ss_pred CeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcc-cCCCceEEEe
Confidence 58999999999999999999999999999999999999999999999999 9999998875
No 108
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=97.33 E-value=0.0005 Score=73.84 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=32.0
Q ss_pred eEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995 130 VEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (622)
Q Consensus 130 ~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~ 165 (622)
..|.||++|+|.++.++.|+. |..|++|+.|.+.+
T Consensus 209 ~~I~AP~dG~V~~~~~~~G~~-V~~g~~l~~I~~~~ 243 (346)
T PRK10476 209 TTVRAPFDGRVVGLKVSVGEF-AAPMQPIFTLIDTD 243 (346)
T ss_pred CEEECCCCcEEEeeecCCCCC-cCCCCeEEEEecCC
Confidence 368999999999999999999 99999999997654
No 109
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=97.32 E-value=0.00036 Score=83.28 Aligned_cols=64 Identities=23% Similarity=0.443 Sum_probs=59.0
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCC
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP 291 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~ 291 (622)
.|++++|+|+.|++|..||+-+|||.|||.|.+.++.+|.|. ...++|+. +..|++|+.+.-+.
T Consensus 693 ~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i~-~i~~~G~~-i~aG~vlakL~lDd 756 (2196)
T KOG0368|consen 693 PGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRIQ-LIKQEGDA-IEAGSVLAKLTLDD 756 (2196)
T ss_pred CccceEEEecCCCceecCCeeeehehhheeeeeeccCCceEE-EecCCCCc-cCccceeEEeecCC
Confidence 489999999999999999999999999999999999999995 55899999 99999999987543
No 110
>PRK13380 glycine cleavage system protein H; Provisional
Probab=97.30 E-value=0.00034 Score=65.62 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=42.8
Q ss_pred ceeeEeeeC-CCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCC
Q 006995 227 GNIAKWRKN-EGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEG 274 (622)
Q Consensus 227 g~i~~w~v~-~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g 274 (622)
|.|+.+.+. +|+.|++||+++.||++|+..+|.||.+|+|.+++.+--
T Consensus 44 G~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~ 92 (144)
T PRK13380 44 GDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALE 92 (144)
T ss_pred CCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhh
Confidence 678887775 899999999999999999999999999999999875433
No 111
>PRK12784 hypothetical protein; Provisional
Probab=97.26 E-value=0.0016 Score=53.31 Aligned_cols=65 Identities=12% Similarity=0.081 Sum_probs=58.9
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEe-cceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995 99 SQGNIAKWRKKEGDKIEIGDILCEIET-DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED 164 (622)
Q Consensus 99 ~eg~i~~w~v~~Gd~V~~g~~l~~vet-dK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~ 164 (622)
-.|+|-+.|+.+++.|-++++|+-|++ |+.-..|.--.+|.|.-+.+++|+. +..+..|+.++++
T Consensus 12 ~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~-i~~dtlL~~~edD 77 (84)
T PRK12784 12 YEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQ-IHTDTLLVRLEDD 77 (84)
T ss_pred cccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCce-ecCCcEEEEEeec
Confidence 468999999999999999999999998 4556668889999999999999999 9999999999754
No 112
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=97.23 E-value=0.00068 Score=73.91 Aligned_cols=72 Identities=18% Similarity=0.279 Sum_probs=58.8
Q ss_pred CCCCCCceEEEEEEEecCCCeeecCCeEEEEEecce--------------------------------------------
Q 006995 93 ALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKA-------------------------------------------- 128 (622)
Q Consensus 93 ~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~-------------------------------------------- 128 (622)
.++.- ..|+|.++++++||.|++||+|+.|++...
T Consensus 65 ~l~~~-v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~ 143 (385)
T PRK09578 65 EVRAR-VAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTE 143 (385)
T ss_pred EEecc-CcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 44444 459999999999999999999999987311
Q ss_pred ---------------------------eeEEecCCcEEEEEEEecCCCccccCC--CeEEEEEcCCc
Q 006995 129 ---------------------------TVEFESLEEGFLAKILVPEGSKDVPVG--QPIAITVEDAD 166 (622)
Q Consensus 129 ---------------------------~~~i~s~~~G~i~~~~~~~g~~~v~~G--~~l~~i~~~~~ 166 (622)
...|.||++|+|.+.++++|+. |..| ++|+.|...+.
T Consensus 144 ~~~~~~~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~-V~~g~~~~l~~i~~~~~ 209 (385)
T PRK09578 144 AVADERQAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGAL-VGQDQATPLTTVEQLDP 209 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCe-ecCCCCcceEEEEecCc
Confidence 1369999999999999999999 9886 58988865443
No 113
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=97.18 E-value=0.00049 Score=63.23 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=40.3
Q ss_pred EEEEEEE-ecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCC
Q 006995 101 GNIAKWR-KKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS 149 (622)
Q Consensus 101 g~i~~w~-v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~ 149 (622)
|+|..+. .++|++|++||++|.||++|+..+|.||.+|+|.++.-..-+
T Consensus 36 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~ 85 (127)
T TIGR00527 36 GDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALED 85 (127)
T ss_pred CCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhhh
Confidence 4454442 357999999999999999999999999999999888655444
No 114
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=97.17 E-value=0.00079 Score=71.81 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=31.8
Q ss_pred eEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995 130 VEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (622)
Q Consensus 130 ~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~ 165 (622)
..|.||++|+|..+.+.+|+. |..|++|+.|.+..
T Consensus 204 ~~I~AP~dG~V~~~~~~~G~~-V~~G~~l~~I~~~~ 238 (331)
T PRK03598 204 TELIAPSDGTILTRAVEPGTM-LNAGSTVFTLSLTR 238 (331)
T ss_pred CEEECCCCeEEEeccCCCCCC-cCCCCeEEEEecCC
Confidence 479999999999999999999 99999999996543
No 115
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=97.15 E-value=0.0009 Score=73.16 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=32.4
Q ss_pred eEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCCc
Q 006995 130 VEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDAD 166 (622)
Q Consensus 130 ~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~~ 166 (622)
..|.||++|+|..+.++.|+. |..|++|+.|.+...
T Consensus 216 t~I~AP~dG~V~~~~v~~G~~-V~~g~pl~~Iv~~~~ 251 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVGAQ-ISPTTPLMAVVPATN 251 (390)
T ss_pred CEEECCCCeEEEEEecCCCCE-eCCCCeEEEEEeCCc
Confidence 369999999999999999999 999999999975543
No 116
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.08 E-value=0.00077 Score=51.51 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=29.4
Q ss_pred eeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995 129 TVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED 164 (622)
Q Consensus 129 ~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~ 164 (622)
++.|.++.+|+|.++++++|+. |+.|++|+.|+..
T Consensus 2 ~~~I~~~~~G~V~~v~V~~G~~-VkkGd~L~~ld~~ 36 (50)
T PF13533_consen 2 TVTIQAPVSGRVESVYVKEGQQ-VKKGDVLLVLDSP 36 (50)
T ss_pred eEEEeCCCCEEEEEEEecCCCE-EcCCCEEEEECcH
Confidence 3578889999999999999998 9999999988643
No 117
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.07 E-value=0.0006 Score=52.09 Aligned_cols=29 Identities=24% Similarity=0.495 Sum_probs=26.4
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEecc
Q 006995 99 SQGNIAKWRKKEGDKIEIGDILCEIETDK 127 (622)
Q Consensus 99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK 127 (622)
..|+|.+|+|++||.|++||+|+++++..
T Consensus 9 ~~G~V~~v~V~~G~~VkkGd~L~~ld~~~ 37 (50)
T PF13533_consen 9 VSGRVESVYVKEGQQVKKGDVLLVLDSPD 37 (50)
T ss_pred CCEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence 36999999999999999999999998754
No 118
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=97.07 E-value=0.0017 Score=71.50 Aligned_cols=65 Identities=17% Similarity=0.224 Sum_probs=56.6
Q ss_pred cceeeEee-eCCCCeeecCCeeEEEeccc------------------------------------------------cee
Q 006995 226 QGNIAKWR-KNEGDKIEVGDVICEIETDK------------------------------------------------ATL 256 (622)
Q Consensus 226 eg~i~~w~-v~~Gd~V~~gd~l~~vetdK------------------------------------------------~~~ 256 (622)
.|.|.+++ +++||.|++||+|++|++.. ...
T Consensus 131 ~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~~ 210 (409)
T PRK09783 131 AGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTRF 210 (409)
T ss_pred CEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCcE
Confidence 48999998 99999999999999998310 134
Q ss_pred eEecCCCeeEEEEeccCCCeecccCCeEEEEecCC
Q 006995 257 EFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP 291 (622)
Q Consensus 257 ~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~ 291 (622)
.|.||++|+|.++.+.+|+. |..|++|+.|.+..
T Consensus 211 ~I~AP~dGvV~~~~v~~G~~-V~~g~~L~~I~d~~ 244 (409)
T PRK09783 211 TLKAPIDGVITAFDLRAGMN-IAKDNVVAKIQGMD 244 (409)
T ss_pred EEECCCCeEEEEEECCCCCE-ECCCCeEEEEEcCC
Confidence 69999999999999999999 99999999997543
No 119
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=97.05 E-value=0.00037 Score=74.75 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=37.2
Q ss_pred cCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhc
Q 006995 330 KISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKS 369 (622)
Q Consensus 330 ~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~ 369 (622)
++||.+|++|+++|||++.++|||++|||+++||+++...
T Consensus 7 ~asPaar~la~e~~idl~~i~gtG~~gri~k~Dv~~~~~~ 46 (347)
T PRK14843 7 RATPAARKLADDLGINLYDVSGSGANGRVHKEDVETYKDT 46 (347)
T ss_pred cCChHHHHHHHHcCCCHHHCCCCCCCCceeHHHHhhhccc
Confidence 4789999999999999999999999999999999988653
No 120
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=97.03 E-value=0.0015 Score=69.52 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=31.2
Q ss_pred eeEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995 256 LEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED 290 (622)
Q Consensus 256 ~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~ 290 (622)
..|.||++|+|..+.+..|+. |..|++|+.|.+.
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~~-v~~g~~l~~i~~~ 238 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQV-VSPGQPLMAVVPA 238 (334)
T ss_pred cEEEcCCCcEEEEEecCCCCE-eCCCCeeEEEEcC
Confidence 368999999999999999999 9999999999754
No 121
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=96.98 E-value=0.0017 Score=71.06 Aligned_cols=67 Identities=31% Similarity=0.310 Sum_probs=55.9
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEecce--------------------------------------------------
Q 006995 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA-------------------------------------------------- 128 (622)
Q Consensus 99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~-------------------------------------------------- 128 (622)
..|.|.+.+|++||.|++||+|++|+....
T Consensus 72 vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~ 151 (397)
T PRK15030 72 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ 151 (397)
T ss_pred CcEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 349999999999999999999999985210
Q ss_pred ---------------------eeEEecCCcEEEEEEEecCCCccccCCCe--EEEEEcCCc
Q 006995 129 ---------------------TVEFESLEEGFLAKILVPEGSKDVPVGQP--IAITVEDAD 166 (622)
Q Consensus 129 ---------------------~~~i~s~~~G~i~~~~~~~g~~~v~~G~~--l~~i~~~~~ 166 (622)
...|.||++|+|.+++++.|+. |..|++ |+.|.+.+.
T Consensus 152 ~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~-V~~g~~~~l~~i~~~~~ 211 (397)
T PRK15030 152 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGAL-VQNGQATALATVQQLDP 211 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCE-ECCCCCceEEEEEecCc
Confidence 1358999999999999999999 999985 677755443
No 122
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=96.97 E-value=0.0017 Score=70.77 Aligned_cols=67 Identities=27% Similarity=0.266 Sum_probs=56.6
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEecc---------------------------------------------------
Q 006995 99 SQGNIAKWRKKEGDKIEIGDILCEIETDK--------------------------------------------------- 127 (622)
Q Consensus 99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK--------------------------------------------------- 127 (622)
..|.|.+.++++||.|++||+|++|+...
T Consensus 68 v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~ 147 (385)
T PRK09859 68 VGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLN 147 (385)
T ss_pred CcEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 45999999999999999999999998530
Q ss_pred --------------------eeeEEecCCcEEEEEEEecCCCccccCCC--eEEEEEcCCc
Q 006995 128 --------------------ATVEFESLEEGFLAKILVPEGSKDVPVGQ--PIAITVEDAD 166 (622)
Q Consensus 128 --------------------~~~~i~s~~~G~i~~~~~~~g~~~v~~G~--~l~~i~~~~~ 166 (622)
....|.||++|+|.+.+++.|+. |..|+ +|+.|.+.+.
T Consensus 148 ~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~-V~~g~~~~l~~i~~~~~ 207 (385)
T PRK09859 148 EAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGAL-VTANQADSLVTVQRLDP 207 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCe-ECCCCCcceEEEEecCC
Confidence 01469999999999999999999 99985 6888865443
No 123
>PRK01202 glycine cleavage system protein H; Provisional
Probab=96.96 E-value=0.0022 Score=58.93 Aligned_cols=44 Identities=20% Similarity=0.328 Sum_probs=38.1
Q ss_pred ceeeEee-eCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEe
Q 006995 227 GNIAKWR-KNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKIL 270 (622)
Q Consensus 227 g~i~~w~-v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~ 270 (622)
|+|..+. .++|++|++||+++.||++|...+|.||.+|+|.+++
T Consensus 37 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN 81 (127)
T PRK01202 37 GDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVN 81 (127)
T ss_pred CCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEh
Confidence 4555443 3579999999999999999999999999999999994
No 124
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=96.96 E-value=0.0017 Score=68.87 Aligned_cols=64 Identities=14% Similarity=0.289 Sum_probs=56.3
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccc---------------------------------------------------
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKA--------------------------------------------------- 254 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~--------------------------------------------------- 254 (622)
.|.|.+++|++||.|++||+|++++....
T Consensus 55 ~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~a 134 (310)
T PRK10559 55 SGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQTV 134 (310)
T ss_pred ceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Confidence 48999999999999999999999988310
Q ss_pred -------------------eeeEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995 255 -------------------TLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED 290 (622)
Q Consensus 255 -------------------~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~ 290 (622)
...|.||++|+|.++.+++|+. |..|++|+.|.+.
T Consensus 135 ~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~-V~~g~~l~~Iv~~ 188 (310)
T PRK10559 135 LHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEF-ITRGSTAVALVKQ 188 (310)
T ss_pred HHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCE-ecCCCeeEEEEeC
Confidence 1359999999999999999999 9999999988754
No 125
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=96.89 E-value=0.0016 Score=68.52 Aligned_cols=64 Identities=28% Similarity=0.447 Sum_probs=56.0
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccc---------------------------------------------------
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKA--------------------------------------------------- 254 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~--------------------------------------------------- 254 (622)
.|.|.++++++||.|++||+|+.++..-.
T Consensus 34 ~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~ 113 (322)
T TIGR01730 34 AGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVEA 113 (322)
T ss_pred cEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHH
Confidence 48999999999999999999999976311
Q ss_pred --------------------eeeEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995 255 --------------------TLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED 290 (622)
Q Consensus 255 --------------------~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~ 290 (622)
...|.||.+|+|..+.+..|+. +..|++|+.|...
T Consensus 114 ~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~-v~~g~~l~~i~~~ 168 (322)
T TIGR01730 114 AQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAY-VTAGQTLATIVDL 168 (322)
T ss_pred HHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCce-eCCCCcEEEEEcC
Confidence 1359999999999999999999 9999999998653
No 126
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=96.85 E-value=0.0025 Score=69.04 Aligned_cols=66 Identities=18% Similarity=0.256 Sum_probs=55.2
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEecce---------------------------------------------------
Q 006995 100 QGNIAKWRKKEGDKIEIGDILCEIETDKA--------------------------------------------------- 128 (622)
Q Consensus 100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~--------------------------------------------------- 128 (622)
.|.|.+|++++||.|++||+|++++....
T Consensus 69 ~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~ 148 (370)
T PRK11578 69 SGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLDT 148 (370)
T ss_pred ceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 49999999999999999999999987310
Q ss_pred ----------------------------------eeEEecCCcEEEEEEEecCCCccccCC---CeEEEEEcCCc
Q 006995 129 ----------------------------------TVEFESLEEGFLAKILVPEGSKDVPVG---QPIAITVEDAD 166 (622)
Q Consensus 129 ----------------------------------~~~i~s~~~G~i~~~~~~~g~~~v~~G---~~l~~i~~~~~ 166 (622)
...|+||++|+|.++++..|+. |..| .+|+.|.+.+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~AP~dG~V~~~~~~~G~~-V~~~~~~~~l~~i~~~~~ 222 (370)
T PRK11578 149 AATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQT-VIAAQQAPNILTLADMST 222 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCcEEEeeecCCCcE-eecccCCceEEEEecCCc
Confidence 1379999999999999999999 9766 37888865443
No 127
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=96.82 E-value=0.0026 Score=68.36 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=30.8
Q ss_pred eEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995 257 EFECLEEGYLAKILAPEGSKDVAVGQPIAITVED 290 (622)
Q Consensus 257 ~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~ 290 (622)
.|.||++|+|.++.+..|+. |..|++|+.|...
T Consensus 210 ~I~AP~dG~V~~~~~~~G~~-V~~g~~l~~I~~~ 242 (346)
T PRK10476 210 TVRAPFDGRVVGLKVSVGEF-AAPMQPIFTLIDT 242 (346)
T ss_pred EEECCCCcEEEeeecCCCCC-cCCCCeEEEEecC
Confidence 58999999999999999999 9999999999764
No 128
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=96.80 E-value=0.0013 Score=60.33 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=38.1
Q ss_pred ceeeEee-eCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEec
Q 006995 227 GNIAKWR-KNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILA 271 (622)
Q Consensus 227 g~i~~w~-v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~ 271 (622)
|.|.-+. .++|+.|++||+++.||++|+..+|.||.+|+|.+++-
T Consensus 36 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~ 81 (127)
T TIGR00527 36 GDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVND 81 (127)
T ss_pred CCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehH
Confidence 3444432 35799999999999999999999999999999999864
No 129
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=96.78 E-value=0.0025 Score=70.28 Aligned_cols=65 Identities=20% Similarity=0.360 Sum_probs=54.8
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEecce--------------------------------------------------
Q 006995 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA-------------------------------------------------- 128 (622)
Q Consensus 99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~-------------------------------------------------- 128 (622)
..|.|.++++++||.|++||+|++|.....
T Consensus 94 vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~ 173 (415)
T PRK11556 94 VDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVS 173 (415)
T ss_pred ccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 469999999999999999999999975310
Q ss_pred ---------------------eeEEecCCcEEEEEEEecCCCccccCCC--eEEEEEcC
Q 006995 129 ---------------------TVEFESLEEGFLAKILVPEGSKDVPVGQ--PIAITVED 164 (622)
Q Consensus 129 ---------------------~~~i~s~~~G~i~~~~~~~g~~~v~~G~--~l~~i~~~ 164 (622)
...|.||++|+|..+.++.|+. |..|+ +|+.|...
T Consensus 174 ~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~-V~~g~~~~l~~i~~~ 231 (415)
T PRK11556 174 ETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQ-ISSGDTTGIVVITQT 231 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCce-ecCCCCceeEEEecC
Confidence 2369999999999999999999 99985 67777543
No 130
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=96.72 E-value=0.0032 Score=57.46 Aligned_cols=47 Identities=28% Similarity=0.350 Sum_probs=35.4
Q ss_pred EEEEEEE-ecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecC
Q 006995 101 GNIAKWR-KKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPE 147 (622)
Q Consensus 101 g~i~~w~-v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~ 147 (622)
|+|+.+. .++|++|++|++++.||+.|...++.||.+|+|.++.-..
T Consensus 31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~l 78 (122)
T PF01597_consen 31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEEL 78 (122)
T ss_dssp -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GHH
T ss_pred CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEcccc
Confidence 4444443 4569999999999999999999999999999998885543
No 131
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=96.68 E-value=0.0016 Score=68.67 Aligned_cols=66 Identities=27% Similarity=0.507 Sum_probs=48.6
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEecce---------------------e----------------------------
Q 006995 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA---------------------T---------------------------- 129 (622)
Q Consensus 99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~---------------------~---------------------------- 129 (622)
..|.| +|+|++||+|++||+|++++++.. .
T Consensus 28 ~~G~v-~~~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 106 (328)
T PF12700_consen 28 VSGRV-SVNVKEGDKVKKGQVLAELDSSDLQAQLEQAQAELEQAEAQLEQAQAEQEQQIKQAISQLSYERAKKLYSQIAI 106 (328)
T ss_dssp S-EEE-EE-S-TTSEEETT-EEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHCHHTCSSTS
T ss_pred CCEEE-EEEeCCcCEECCCCEEEEEEChhhhhhhhhhHHHHHHHHHhHHHHhhhhHHHHHHHHHHhHHHHHHhhhhhhhh
Confidence 35999 999999999999999999997411 1
Q ss_pred ------------------e----------EEecCCcEEEE-------------------------EEEecCCCccccCCC
Q 006995 130 ------------------V----------EFESLEEGFLA-------------------------KILVPEGSKDVPVGQ 156 (622)
Q Consensus 130 ------------------~----------~i~s~~~G~i~-------------------------~~~~~~g~~~v~~G~ 156 (622)
. .|.||++|+|. ++.++.|+. |..|+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ap~~G~V~~~~d~~e~~~~~~i~~~~~~~~~~~~~~~~~g~~-v~~g~ 185 (328)
T PF12700_consen 107 SKEELDQAKANYEQAQAQLNKAQLQSQLAQIKAPFDGVVSYSIDGYENLNEDSIDPEDIDQANYSKINVNPGQY-VAAGQ 185 (328)
T ss_dssp STCCHHHHHCHHHHHHHHHC-HHHHHHHHHEE-SSSEEEE------------EES----------E-TT-TT-E-ETSTT
T ss_pred HHHHHHHHHhHHHHHHhhhccccccccccccccchhhhccccccccccccccccccccccccccceeccCCCCE-ECCCc
Confidence 1 29999999999 999999999 99999
Q ss_pred eEEEEEcCCc
Q 006995 157 PIAITVEDAD 166 (622)
Q Consensus 157 ~l~~i~~~~~ 166 (622)
+|+.|.+...
T Consensus 186 ~l~~i~~~~~ 195 (328)
T PF12700_consen 186 PLFTIADLSN 195 (328)
T ss_dssp CSEEEEEESE
T ss_pred eeeeeccCCc
Confidence 9999976543
No 132
>PRK12784 hypothetical protein; Provisional
Probab=96.65 E-value=0.0083 Score=49.23 Aligned_cols=64 Identities=11% Similarity=0.112 Sum_probs=57.6
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEeccc-ceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDK-ATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED 290 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK-~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~ 290 (622)
.|++-+++++++++|-+.+.|+-|+++. ....|.-..+|.|..+.+.+|+. +..+..|+.+.++
T Consensus 13 ~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~-i~~dtlL~~~edD 77 (84)
T PRK12784 13 EGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQ-IHTDTLLVRLEDD 77 (84)
T ss_pred ccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCce-ecCCcEEEEEeec
Confidence 4899999999999999999999999854 45568889999999999999999 9999999998653
No 133
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=96.56 E-value=0.0045 Score=67.68 Aligned_cols=34 Identities=15% Similarity=0.311 Sum_probs=31.4
Q ss_pred eEecCCCeeEEEEeccCCCeecccCCeEEEEecCC
Q 006995 257 EFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP 291 (622)
Q Consensus 257 ~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~ 291 (622)
.|.||++|+|..+.++.|+. |..|++|+.|.+..
T Consensus 217 ~I~AP~dG~V~~~~v~~G~~-V~~g~pl~~Iv~~~ 250 (390)
T PRK15136 217 KIVSPMTGYVSRRSVQVGAQ-ISPTTPLMAVVPAT 250 (390)
T ss_pred EEECCCCeEEEEEecCCCCE-eCCCCeEEEEEeCC
Confidence 69999999999999999999 99999999997643
No 134
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=96.45 E-value=0.0071 Score=64.27 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=28.4
Q ss_pred EEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995 131 EFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (622)
Q Consensus 131 ~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~ 165 (622)
.|.||++|+|..+++..|+. |.. ++|+.|...+
T Consensus 206 ~i~AP~dG~V~~~~~~~G~~-v~~-~~l~~i~~~~ 238 (327)
T TIGR02971 206 YVKAPIDGRVLKIHAREGEV-IGS-EGILEMGDTS 238 (327)
T ss_pred EEECCCCeEEEEEecCCCCc-cCC-CccEEEecCC
Confidence 57899999999999999998 886 8888886533
No 135
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=96.43 E-value=0.0058 Score=65.18 Aligned_cols=34 Identities=12% Similarity=0.148 Sum_probs=30.9
Q ss_pred eeEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995 256 LEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED 290 (622)
Q Consensus 256 ~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~ 290 (622)
..|.||.+|+|..+.+.+|+. |..|++|+.|...
T Consensus 204 ~~I~AP~dG~V~~~~~~~G~~-V~~G~~l~~I~~~ 237 (331)
T PRK03598 204 TELIAPSDGTILTRAVEPGTM-LNAGSTVFTLSLT 237 (331)
T ss_pred CEEECCCCeEEEeccCCCCCC-cCCCCeEEEEecC
Confidence 369999999999999999999 9999999998644
No 136
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=96.36 E-value=0.0069 Score=66.07 Aligned_cols=63 Identities=19% Similarity=0.328 Sum_probs=54.0
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccc---------------------------------------------------
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKA--------------------------------------------------- 254 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~--------------------------------------------------- 254 (622)
.|.|.++++++||.|++||+|+.|+....
T Consensus 71 ~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~~ 150 (385)
T PRK09578 71 AGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADERQ 150 (385)
T ss_pred cEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 48999999999999999999999987411
Q ss_pred --------------------eeeEecCCCeeEEEEeccCCCeecccC--CeEEEEec
Q 006995 255 --------------------TLEFECLEEGYLAKILAPEGSKDVAVG--QPIAITVE 289 (622)
Q Consensus 255 --------------------~~~i~s~~~G~v~~i~~~~g~~~v~vG--~~l~~i~~ 289 (622)
...|.||++|+|.+.++++|+. |..| ++|+.|..
T Consensus 151 a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~-V~~g~~~~l~~i~~ 206 (385)
T PRK09578 151 AKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGAL-VGQDQATPLTTVEQ 206 (385)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCe-ecCCCCcceEEEEe
Confidence 1259999999999999999999 9885 58888754
No 137
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=96.23 E-value=0.005 Score=56.21 Aligned_cols=61 Identities=18% Similarity=0.236 Sum_probs=45.4
Q ss_pred eEEecCCCCCCCceEEEEEE-EecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCC
Q 006995 87 TVVGMPALSPTMSQGNIAKW-RKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEG 148 (622)
Q Consensus 87 ~~~~~p~~g~~~~eg~i~~w-~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g 148 (622)
..|-|-+.+.. .=|.|+-. +.++|+.|++|+.++.||+-|+..+|.||.+|.|.++.-..-
T Consensus 26 ~tvGiT~~aq~-~lGdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~~l~ 87 (131)
T COG0509 26 ATVGITDYAQD-QLGDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEALV 87 (131)
T ss_pred EEEeCCHHHHH-hcCCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEechhhh
Confidence 44555554444 22555544 346789999999999999999999999999999977754433
No 138
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=96.11 E-value=0.011 Score=64.76 Aligned_cols=63 Identities=27% Similarity=0.323 Sum_probs=53.5
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccc---------------------------------------------------
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKA--------------------------------------------------- 254 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~--------------------------------------------------- 254 (622)
.|.|.++++++||.|++||+|++|+....
T Consensus 73 sG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~~ 152 (397)
T PRK15030 73 SGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQ 152 (397)
T ss_pred cEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHH
Confidence 48999999999999999999999986310
Q ss_pred --------------------eeeEecCCCeeEEEEeccCCCeecccCCe--EEEEec
Q 006995 255 --------------------TLEFECLEEGYLAKILAPEGSKDVAVGQP--IAITVE 289 (622)
Q Consensus 255 --------------------~~~i~s~~~G~v~~i~~~~g~~~v~vG~~--l~~i~~ 289 (622)
...|.||++|+|.+++++.|+. |..|++ |+.+..
T Consensus 153 a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~-V~~g~~~~l~~i~~ 208 (397)
T PRK15030 153 ANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGAL-VQNGQATALATVQQ 208 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCE-ECCCCCceEEEEEe
Confidence 1249999999999999999999 999985 666654
No 139
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=96.11 E-value=0.011 Score=53.98 Aligned_cols=44 Identities=25% Similarity=0.363 Sum_probs=34.5
Q ss_pred ceeeEeee-CCCCeeecCCeeEEEecccceeeEecCCCeeEEEEe
Q 006995 227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKIL 270 (622)
Q Consensus 227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~ 270 (622)
|.|+.+.. ++|+.+++|++++.||+.|...++.||.+|+|.++.
T Consensus 31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN 75 (122)
T PF01597_consen 31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVN 75 (122)
T ss_dssp -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-
T ss_pred CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEc
Confidence 55655544 569999999999999999999999999999999985
No 140
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=96.09 E-value=0.012 Score=64.26 Aligned_cols=63 Identities=24% Similarity=0.272 Sum_probs=53.9
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEeccc----------------------------------------------------
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDK---------------------------------------------------- 253 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK---------------------------------------------------- 253 (622)
.|.|.++++++||.|++||+|++|+...
T Consensus 69 ~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~~ 148 (385)
T PRK09859 69 GGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNE 148 (385)
T ss_pred cEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Confidence 4899999999999999999999998641
Q ss_pred -------------------ceeeEecCCCeeEEEEeccCCCeecccCC--eEEEEec
Q 006995 254 -------------------ATLEFECLEEGYLAKILAPEGSKDVAVGQ--PIAITVE 289 (622)
Q Consensus 254 -------------------~~~~i~s~~~G~v~~i~~~~g~~~v~vG~--~l~~i~~ 289 (622)
....|.||++|+|.+.++..|+. |..|+ +|+.+..
T Consensus 149 a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~-V~~g~~~~l~~i~~ 204 (385)
T PRK09859 149 AEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGAL-VTANQADSLVTVQR 204 (385)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCe-ECCCCCcceEEEEe
Confidence 01369999999999999999999 99985 5887754
No 141
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=96.01 E-value=0.021 Score=58.18 Aligned_cols=59 Identities=24% Similarity=0.344 Sum_probs=50.8
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (622)
Q Consensus 100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~ 165 (622)
.|. .+.+++-||.|++||+|+.|+. .+|.||.+|+|.-+ .++|-. |..|..|++|+.-.
T Consensus 172 ~Gi-~~~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGl-irdG~~-V~~G~Ki~dIDPR~ 230 (256)
T TIGR03309 172 DGI-VTPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGL-IHEGLT-VTEGLKIGDVDPRG 230 (256)
T ss_pred CeE-EeeccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEE-ecCCCC-cCCCCEEEEECCCC
Confidence 354 4679999999999999999974 79999999999766 678988 99999999997544
No 142
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=95.77 E-value=0.021 Score=61.97 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=27.9
Q ss_pred eEecCCCeeEEEEeccCCCeecccC---CeEEEEecC
Q 006995 257 EFECLEEGYLAKILAPEGSKDVAVG---QPIAITVED 290 (622)
Q Consensus 257 ~i~s~~~G~v~~i~~~~g~~~v~vG---~~l~~i~~~ 290 (622)
.|.||++|+|..+.+..|+. |..| ++|+.|...
T Consensus 185 ~I~AP~dG~V~~~~~~~G~~-V~~~~~~~~l~~i~~~ 220 (370)
T PRK11578 185 RIVAPMAGEVTQITTLQGQT-VIAAQQAPNILTLADM 220 (370)
T ss_pred EEECCCCcEEEeeecCCCcE-eecccCCceEEEEecC
Confidence 69999999999999999998 9766 368887543
No 143
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=95.70 E-value=0.019 Score=63.41 Aligned_cols=63 Identities=17% Similarity=0.351 Sum_probs=53.1
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccc---------------------------------------------------
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKA--------------------------------------------------- 254 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~--------------------------------------------------- 254 (622)
.|.|.++++++||.|++||+|++|.....
T Consensus 95 sG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~~ 174 (415)
T PRK11556 95 DGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVSE 174 (415)
T ss_pred cEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Confidence 48999999999999999999999976310
Q ss_pred --------------------eeeEecCCCeeEEEEeccCCCeecccCC--eEEEEec
Q 006995 255 --------------------TLEFECLEEGYLAKILAPEGSKDVAVGQ--PIAITVE 289 (622)
Q Consensus 255 --------------------~~~i~s~~~G~v~~i~~~~g~~~v~vG~--~l~~i~~ 289 (622)
...|.||++|+|..+.+..|+. |..|+ +|+.|..
T Consensus 175 a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~-V~~g~~~~l~~i~~ 230 (415)
T PRK11556 175 TEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQ-ISSGDTTGIVVITQ 230 (415)
T ss_pred HHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCce-ecCCCCceeEEEec
Confidence 1269999999999999999999 99984 6777653
No 144
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=95.38 E-value=0.016 Score=53.02 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=37.6
Q ss_pred ceeeEe-eeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEe
Q 006995 227 GNIAKW-RKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKIL 270 (622)
Q Consensus 227 g~i~~w-~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~ 270 (622)
|.|+-+ +.++|+.|++|+.++.||+-|+..+|.||.+|+|.+++
T Consensus 39 Gdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN 83 (131)
T COG0509 39 GDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVN 83 (131)
T ss_pred CCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEec
Confidence 445443 33688999999999999999999999999999998875
No 145
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=95.36 E-value=0.015 Score=61.37 Aligned_cols=26 Identities=31% Similarity=0.681 Sum_probs=20.0
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecc
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETD 252 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetd 252 (622)
.|.| +|+|++||.|++||+|++++++
T Consensus 29 ~G~v-~~~v~~G~~V~kG~~L~~ld~~ 54 (328)
T PF12700_consen 29 SGRV-SVNVKEGDKVKKGQVLAELDSS 54 (328)
T ss_dssp -EEE-EE-S-TTSEEETT-EEEEEE-H
T ss_pred CEEE-EEEeCCcCEECCCCEEEEEECh
Confidence 4899 9999999999999999999884
No 146
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=95.12 E-value=0.067 Score=47.15 Aligned_cols=47 Identities=23% Similarity=0.229 Sum_probs=38.9
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCC
Q 006995 101 GNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEG 148 (622)
Q Consensus 101 g~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g 148 (622)
|.-.+-.|++||+|.+||.|++-+ +-....|-|+.+|+|..+.-...
T Consensus 39 G~~~~p~V~~Gd~V~~GQ~Ia~~~-~~~sa~iHAsvSG~V~~I~~~~~ 85 (101)
T PF13375_consen 39 GAPAEPVVKVGDKVKKGQLIAEAE-GFLSAPIHASVSGTVTAIEKRPI 85 (101)
T ss_pred CCcceEEEcCCCEEcCCCEEEecC-CCcEeeEEcCCCeEEEEEeeeEc
Confidence 344567899999999999999986 35688999999999998865543
No 147
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=94.80 E-value=0.063 Score=54.97 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=31.4
Q ss_pred eEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995 130 VEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (622)
Q Consensus 130 ~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~ 165 (622)
+.|+||++|+|..+++..|+. |..|++|+.|.+..
T Consensus 89 ~~i~AP~dG~V~~~~~~~G~~-v~~g~~l~~i~~~~ 123 (265)
T TIGR00999 89 VEVRSPFDGYITQKSVTLGDY-VAPQAELFRVADLG 123 (265)
T ss_pred EEEECCCCeEEEEEEcCCCCE-eCCCCceEEEEcCC
Confidence 357999999999999999999 99999999997544
No 148
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=94.39 E-value=0.11 Score=52.96 Aligned_cols=55 Identities=27% Similarity=0.329 Sum_probs=48.3
Q ss_pred eeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995 229 IAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (622)
Q Consensus 229 i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~ 289 (622)
+.+..++-||.|++||+|+.|+. .+|.||.+|+|..+ +++|-. |..|-.|+.|..
T Consensus 174 i~~~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGl-irdG~~-V~~G~Ki~dIDP 228 (256)
T TIGR03309 174 IVTPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGL-IHEGLT-VTEGLKIGDVDP 228 (256)
T ss_pred EEeeccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEE-ecCCCC-cCCCCEEEEECC
Confidence 45568999999999999999975 79999999999887 688987 999999998853
No 149
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=94.28 E-value=0.095 Score=49.27 Aligned_cols=45 Identities=22% Similarity=0.183 Sum_probs=39.8
Q ss_pred EEe---cCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCc
Q 006995 106 WRK---KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150 (622)
Q Consensus 106 w~v---~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~ 150 (622)
||+ ++|..|.+||.++-+|+-|+..+|.+|.+|.|.+|.-+-.+.
T Consensus 83 v~veLPe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~En 130 (172)
T KOG3373|consen 83 VYVELPEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEEN 130 (172)
T ss_pred EEEEcCCCCCccccCcceeeeeehhhhhhhhCcCCceEEEeccccccC
Confidence 555 578899999999999999999999999999999997766554
No 150
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=93.90 E-value=0.19 Score=52.69 Aligned_cols=56 Identities=20% Similarity=0.226 Sum_probs=44.8
Q ss_pred EEEEEecCCCeeecCCeEEEEEe--cceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995 103 IAKWRKKEGDKIEIGDILCEIET--DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (622)
Q Consensus 103 i~~w~v~~Gd~V~~g~~l~~vet--dK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i 161 (622)
+.++.++.||.|++||+|++|-. .....+|.||.+|+|.-+.... . |..|+.|+.|
T Consensus 229 ~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~~~~--~-v~~G~~l~~i 286 (287)
T cd06251 229 LLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRNNLP--L-VNEGDALFHI 286 (287)
T ss_pred EEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEecCCC--c-cCCCCEEEEe
Confidence 56889999999999999999954 2334789999999996555444 4 7899998876
No 151
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=93.83 E-value=0.096 Score=46.18 Aligned_cols=43 Identities=26% Similarity=0.273 Sum_probs=37.7
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEe
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKIL 270 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~ 270 (622)
|.-.+-.|++||+|++||.|++.+. -....|.|+.+|+|..|.
T Consensus 39 G~~~~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~ 81 (101)
T PF13375_consen 39 GAPAEPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIE 81 (101)
T ss_pred CCcceEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEe
Confidence 5566789999999999999999974 557899999999999984
No 152
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=93.65 E-value=0.097 Score=53.56 Aligned_cols=39 Identities=38% Similarity=0.472 Sum_probs=34.2
Q ss_pred EEEEecCCCeeecCCeEEEEEecce--eeEEecCCcEEEEEEEe
Q 006995 104 AKWRKKEGDKIEIGDILCEIETDKA--TVEFESLEEGFLAKILV 145 (622)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~vetdK~--~~~i~s~~~G~i~~~~~ 145 (622)
-+..|+|||+|+.||+|++ ||- .+-++||.+|+|++|..
T Consensus 41 Pkm~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~R 81 (257)
T PF05896_consen 41 PKMLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINR 81 (257)
T ss_pred ccEEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEec
Confidence 5789999999999999996 776 45689999999999876
No 153
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=93.26 E-value=0.25 Score=52.12 Aligned_cols=58 Identities=24% Similarity=0.205 Sum_probs=47.0
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEe---cceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995 101 GNIAKWRKKEGDKIEIGDILCEIET---DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (622)
Q Consensus 101 g~i~~w~v~~Gd~V~~g~~l~~vet---dK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i 161 (622)
+=+...+++.||.|++||+|++|=. +....+|.||.+|+|.-+... -. |..|+.|+.|
T Consensus 237 ~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~~~--p~-v~~G~~l~~i 297 (298)
T cd06253 237 SGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLREY--PL-VYEGSLVARI 297 (298)
T ss_pred CeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEeecC--Ce-ecCCceEEEe
Confidence 3466888999999999999999843 456778999999999765544 45 8899998876
No 154
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=93.23 E-value=0.24 Score=53.63 Aligned_cols=58 Identities=29% Similarity=0.430 Sum_probs=45.8
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEe----cceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995 101 GNIAKWRKKEGDKIEIGDILCEIET----DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (622)
Q Consensus 101 g~i~~w~v~~Gd~V~~g~~l~~vet----dK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i 161 (622)
|=+..++++.||.|++||+|++|=. +....+|.||.+|+|.-+... -. |..|+.|+.|
T Consensus 297 ~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~~~~--~~-V~~G~~l~~I 358 (359)
T cd06250 297 GGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFARASR--RF-VRAGDELAKI 358 (359)
T ss_pred CeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEecCC--cc-ccCCCeEEEe
Confidence 4477899999999999999999853 334555799999999665444 44 8899999876
No 155
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=93.02 E-value=0.17 Score=51.85 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=30.2
Q ss_pred eEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995 257 EFECLEEGYLAKILAPEGSKDVAVGQPIAITVED 290 (622)
Q Consensus 257 ~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~ 290 (622)
.|.||++|+|..+.+..|+. |..|++|+.|.+.
T Consensus 90 ~i~AP~dG~V~~~~~~~G~~-v~~g~~l~~i~~~ 122 (265)
T TIGR00999 90 EVRSPFDGYITQKSVTLGDY-VAPQAELFRVADL 122 (265)
T ss_pred EEECCCCeEEEEEEcCCCCE-eCCCCceEEEEcC
Confidence 47999999999999999999 9999999998653
No 156
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=92.35 E-value=0.48 Score=50.35 Aligned_cols=59 Identities=20% Similarity=0.280 Sum_probs=46.4
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEe----cceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995 101 GNIAKWRKKEGDKIEIGDILCEIET----DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (622)
Q Consensus 101 g~i~~w~v~~Gd~V~~g~~l~~vet----dK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~ 162 (622)
+=+...+++.||.|++||+|++|=. .....+|.||.+|+|.-.... -. |..|+.|+.|.
T Consensus 252 ~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~~~--~~-v~~G~~l~~i~ 314 (316)
T cd06252 252 PGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARRPP--GL-VRRGDCLAVLA 314 (316)
T ss_pred CeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEeeCC--Cc-cCCCCEEEEEe
Confidence 3467899999999999999999843 245668999999999755433 34 78888888774
No 157
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=92.22 E-value=0.4 Score=50.26 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=45.6
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEecc--cceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIETD--KATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetd--K~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i 287 (622)
+-+..+.++.||.|++||+|++|... ....+|.||.+|+|..+. ..-. |..|+.|+.|
T Consensus 227 ~G~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~--~~~~-v~~G~~l~~i 286 (287)
T cd06251 227 GGLLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRN--NLPL-VNEGDALFHI 286 (287)
T ss_pred CeEEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEec--CCCc-cCCCCEEEEe
Confidence 34567899999999999999999652 234689999999996654 3444 8999999876
No 158
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=92.17 E-value=0.37 Score=50.84 Aligned_cols=58 Identities=29% Similarity=0.232 Sum_probs=47.7
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEec---ccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIET---DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vet---dK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i 287 (622)
+=+...+++.||.|++||+|++|-. +....+|.||.+|+|..+. ..-. |..|+.|+.|
T Consensus 237 ~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~--~~p~-v~~G~~l~~i 297 (298)
T cd06253 237 SGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLR--EYPL-VYEGSLVARI 297 (298)
T ss_pred CeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEee--cCCe-ecCCceEEEe
Confidence 4477888999999999999999965 4456789999999997764 4455 8999999876
No 159
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=92.16 E-value=0.4 Score=51.24 Aligned_cols=57 Identities=25% Similarity=0.454 Sum_probs=45.6
Q ss_pred EEEEEEecCCCeeecCCeEEEEEe----cceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995 102 NIAKWRKKEGDKIEIGDILCEIET----DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (622)
Q Consensus 102 ~i~~w~v~~Gd~V~~g~~l~~vet----dK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i 161 (622)
=+....++.||.|++||+|++|=. .....+|.||.+|+|.-+... -. |..|+.|+.|
T Consensus 264 Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~~~--~~-V~~Gd~l~~i 324 (325)
T TIGR02994 264 GLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARHFP--GL-IKSGDCIAVL 324 (325)
T ss_pred eEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEeCC--Cc-cCCCCEEEEe
Confidence 356789999999999999999943 224678999999999775444 45 8899999876
No 160
>PF13437 HlyD_3: HlyD family secretion protein
Probab=92.02 E-value=0.22 Score=43.57 Aligned_cols=33 Identities=30% Similarity=0.458 Sum_probs=30.2
Q ss_pred EEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995 131 EFESLEEGFLAKILVPEGSKDVPVGQPIAITVED 164 (622)
Q Consensus 131 ~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~ 164 (622)
.|.||++|+|..+.++.|+. |..|++|+.|.+.
T Consensus 1 ~i~AP~~G~V~~~~~~~G~~-v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQPGEV-VSAGQPLAEIVDT 33 (105)
T ss_pred CEECCCCEEEEEEeCCCCCE-ECCCCEEEEEEcc
Confidence 47899999999999999999 9999999999765
No 161
>COG3608 Predicted deacylase [General function prediction only]
Probab=91.58 E-value=0.49 Score=50.22 Aligned_cols=61 Identities=21% Similarity=0.350 Sum_probs=49.0
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEec---ceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995 99 SQGNIAKWRKKEGDKIEIGDILCEIETD---KATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (622)
Q Consensus 99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetd---K~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~ 162 (622)
.++=++...|+.||.|++||+|+.|-.. +...||.|+.+|+|..+.... . ++.|+.++.+.
T Consensus 262 p~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~~--~-v~~Gdl~~~v~ 325 (331)
T COG3608 262 PAGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSLR--L-VQPGDLLKVVG 325 (331)
T ss_pred CCCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeecc--c-cCCCCeeeeec
Confidence 3456789999999999999999998754 789999999999998776543 3 66776666653
No 162
>COG3608 Predicted deacylase [General function prediction only]
Probab=91.47 E-value=0.55 Score=49.84 Aligned_cols=61 Identities=21% Similarity=0.351 Sum_probs=49.8
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecc---cceeeEecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETD---KATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetd---K~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~ 289 (622)
++-+++.+++.||.|++||+|+.|-.. +...||.|+.+|+|..+.-.- . ++.|+.++++..
T Consensus 263 ~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~~--~-v~~Gdl~~~v~~ 326 (331)
T COG3608 263 AGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSLR--L-VQPGDLLKVVGR 326 (331)
T ss_pred CCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeecc--c-cCCCCeeeeecc
Confidence 466899999999999999999998765 778899999999998875322 2 777777777654
No 163
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=90.96 E-value=0.62 Score=50.48 Aligned_cols=59 Identities=27% Similarity=0.406 Sum_probs=46.9
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEec----ccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIET----DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vet----dK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i 287 (622)
.+=+...+++.||.|++||+|++|-. +....+|.||.+|+|..+. ..-. |..|+.|+.|
T Consensus 296 ~~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~~--~~~~-V~~G~~l~~I 358 (359)
T cd06250 296 AGGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFARA--SRRF-VRAGDELAKI 358 (359)
T ss_pred CCeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEec--CCcc-ccCCCeEEEe
Confidence 35578899999999999999999854 2334457999999997664 4555 9999999876
No 164
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=90.61 E-value=0.82 Score=48.62 Aligned_cols=59 Identities=22% Similarity=0.262 Sum_probs=47.3
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEec----ccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEe
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIET----DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV 288 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vet----dK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~ 288 (622)
+-+....++.||.|++||+|++|-. .....+|.||.+|+|.-+.. .-. |..|+.|+.|.
T Consensus 252 ~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~~--~~~-v~~G~~l~~i~ 314 (316)
T cd06252 252 PGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARRP--PGL-VRRGDCLAVLA 314 (316)
T ss_pred CeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEeeC--CCc-cCCCCEEEEEe
Confidence 4477889999999999999999865 24456899999999976643 344 88899998774
No 165
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=90.59 E-value=0.2 Score=52.09 Aligned_cols=35 Identities=34% Similarity=0.405 Sum_probs=24.8
Q ss_pred eEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995 130 VEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (622)
Q Consensus 130 ~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~ 165 (622)
+.|.++..|+|.+|++++|+. |+.|++|+.|+...
T Consensus 2 ~~Vq~~~~G~V~~i~V~eG~~-VkkGq~L~~LD~~~ 36 (305)
T PF00529_consen 2 KIVQSLVGGIVTEILVKEGQR-VKKGQVLARLDPTD 36 (305)
T ss_dssp EEE--SS-EEEEEE-S-TTEE-E-TTSECEEE--HH
T ss_pred EEEeCCCCeEEEEEEccCcCE-EeCCCEEEEEEeec
Confidence 578999999999999999999 99999999998543
No 166
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=89.85 E-value=0.49 Score=44.62 Aligned_cols=48 Identities=27% Similarity=0.306 Sum_probs=35.4
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEecceeeE-EecCCcEEEEEEEec
Q 006995 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVE-FESLEEGFLAKILVP 146 (622)
Q Consensus 99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~-i~s~~~G~i~~~~~~ 146 (622)
.||..+-..+.+||+|.+||.|+-+.|-|-.+. +.||++|+|.=+.--
T Consensus 87 veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~e~ 135 (150)
T PF09891_consen 87 VEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVIEI 135 (150)
T ss_dssp EESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEEEE
T ss_pred ecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEEec
Confidence 366677889999999999999999999999876 899999999766433
No 167
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=89.50 E-value=0.38 Score=49.31 Aligned_cols=45 Identities=29% Similarity=0.479 Sum_probs=35.9
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEecccce--eeEecCCCeeEEEEeccCCCe
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIETDKAT--LEFECLEEGYLAKILAPEGSK 276 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~--~~i~s~~~G~v~~i~~~~g~~ 276 (622)
|..-+.+|+|||+|+.||+|++ ||-. +-+.||.+|+|.+|.- |+.
T Consensus 38 g~~Pkm~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~R--G~r 84 (257)
T PF05896_consen 38 GMKPKMLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINR--GER 84 (257)
T ss_pred CCCccEEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEec--CCC
Confidence 3445678999999999999995 6654 5688999999999875 544
No 168
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=89.44 E-value=0.99 Score=48.22 Aligned_cols=58 Identities=24% Similarity=0.369 Sum_probs=46.9
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEec----ccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIET----DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vet----dK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i 287 (622)
+=+....++.||.|++||+|++|-. .....+|.||.+|+|..+. ..-. |..|+.|+.|
T Consensus 263 ~Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~--~~~~-V~~Gd~l~~i 324 (325)
T TIGR02994 263 DGLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARH--FPGL-IKSGDCIAVL 324 (325)
T ss_pred CeEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEe--CCCc-cCCCCEEEEe
Confidence 4467788999999999999999965 2245689999999998764 4455 8999999876
No 169
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=89.42 E-value=0.83 Score=47.88 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=41.0
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEe--cceeeEEecCCcEEEEEEEecCCCccccCCCeE
Q 006995 101 GNIAKWRKKEGDKIEIGDILCEIET--DKATVEFESLEEGFLAKILVPEGSKDVPVGQPI 158 (622)
Q Consensus 101 g~i~~w~v~~Gd~V~~g~~l~~vet--dK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l 158 (622)
+=+...+++.||.|++||+|++|=. .....+|.||++|+|.-+... -. |..|+.|
T Consensus 231 ~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~~--~~-v~~G~~l 287 (288)
T cd06254 231 SGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTAT--LP-VRKGDPL 287 (288)
T ss_pred CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeCC--Cc-cCCCCcc
Confidence 4477899999999999999999832 244668999999999766443 23 5566554
No 170
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=89.34 E-value=0.41 Score=50.60 Aligned_cols=40 Identities=33% Similarity=0.469 Sum_probs=33.8
Q ss_pred EEEecCCCeeecCCeEEEEEecce--eeEEecCCcEEEEEEEecC
Q 006995 105 KWRKKEGDKIEIGDILCEIETDKA--TVEFESLEEGFLAKILVPE 147 (622)
Q Consensus 105 ~w~v~~Gd~V~~g~~l~~vetdK~--~~~i~s~~~G~i~~~~~~~ 147 (622)
...|++||.|++||+|+| ||- .+-++||.+|+|..|+--+
T Consensus 42 ~mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~RG~ 83 (447)
T COG1726 42 SMKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHRGE 83 (447)
T ss_pred cceeccCCeeeccceeee---cccCCCeEEeccCCceEEEeeccc
Confidence 567999999999999997 665 4679999999999986543
No 171
>PF13437 HlyD_3: HlyD family secretion protein
Probab=89.26 E-value=0.56 Score=40.93 Aligned_cols=32 Identities=28% Similarity=0.427 Sum_probs=25.6
Q ss_pred EecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995 258 FECLEEGYLAKILAPEGSKDVAVGQPIAITVED 290 (622)
Q Consensus 258 i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~ 290 (622)
|.||++|+|..+.++.|+. |..|++|+.|...
T Consensus 2 i~AP~~G~V~~~~~~~G~~-v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 2 IRAPFDGVVVSINVQPGEV-VSAGQPLAEIVDT 33 (105)
T ss_pred EECCCCEEEEEEeCCCCCE-ECCCCEEEEEEcc
Confidence 6788888888888888887 8888888877654
No 172
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=89.14 E-value=0.51 Score=50.13 Aligned_cols=42 Identities=26% Similarity=0.371 Sum_probs=35.2
Q ss_pred EEEecceeeEEecCCc---EEEEEEEecCCCccccCCCeEEEEEcC
Q 006995 122 EIETDKATVEFESLEE---GFLAKILVPEGSKDVPVGQPIAITVED 164 (622)
Q Consensus 122 ~vetdK~~~~i~s~~~---G~i~~~~~~~g~~~v~~G~~l~~i~~~ 164 (622)
.|+..--.+.|.++.+ |+|.++++++||. |+.|++|+.|+..
T Consensus 6 ~v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~~-V~~G~~L~~ld~~ 50 (327)
T TIGR02971 6 RLEPEGEVVAVAAPSSGGTDRIKKLLVAEGDR-VQAGQVLAELDSR 50 (327)
T ss_pred eEeecCceEEecCCCCCCCcEEEEEEccCCCE-ecCCcEEEEecCc
Confidence 3444444567889999 9999999999999 9999999999764
No 173
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=87.65 E-value=2.1 Score=56.23 Aligned_cols=35 Identities=29% Similarity=0.407 Sum_probs=25.6
Q ss_pred EEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEE
Q 006995 105 KWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLA 141 (622)
Q Consensus 105 ~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~ 141 (622)
..+|++|+.|++||+||+. |--+..|-+..+|+|.
T Consensus 2423 ~l~v~~g~~V~~g~~la~w--dp~~~piisE~~G~v~ 2457 (2836)
T PRK14844 2423 KLYVDEGGSVKIGDKVAEW--DPYTLPIITEKTGTVS 2457 (2836)
T ss_pred EEEecCCCEecCCCEEEEE--cCCCcceEeecceEEE
Confidence 5789999999999999987 4445555555555543
No 174
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=87.44 E-value=1 Score=42.43 Aligned_cols=45 Identities=22% Similarity=0.329 Sum_probs=34.2
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEeccccee-eEecCCCeeEEEEe
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATL-EFECLEEGYLAKIL 270 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~-~i~s~~~G~v~~i~ 270 (622)
+|..+-..+.+|+.|.+||.|+.+.|-|-.+ -+.||.+|+|.-+.
T Consensus 88 eG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~ 133 (150)
T PF09891_consen 88 EGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI 133 (150)
T ss_dssp ESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred cceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence 5677778889999999999999999999887 58999999998774
No 175
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=87.42 E-value=0.6 Score=38.85 Aligned_cols=24 Identities=38% Similarity=0.572 Sum_probs=20.1
Q ss_pred EEEEecCCCeeecCCeEEEEEecc
Q 006995 104 AKWRKKEGDKIEIGDILCEIETDK 127 (622)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~vetdK 127 (622)
+.++++.||.|++||+||+|=++.
T Consensus 34 i~l~~k~Gd~V~~Gd~l~~i~~~~ 57 (75)
T PF07831_consen 34 IELHKKVGDRVEKGDPLATIYAND 57 (75)
T ss_dssp EEESS-TTSEEBTTSEEEEEEESS
T ss_pred eEecCcCcCEECCCCeEEEEEcCC
Confidence 479999999999999999997653
No 176
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=86.70 E-value=0.67 Score=51.59 Aligned_cols=44 Identities=30% Similarity=0.364 Sum_probs=35.9
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEe
Q 006995 101 GNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILV 145 (622)
Q Consensus 101 g~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~ 145 (622)
|.--+-.|++||+|..||+|++-.. -..+.|.||.+|+|+.|..
T Consensus 38 G~~~k~~Vk~GD~V~~Gq~I~~~~~-~~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 38 GMRPKMKVRPGDKVKAGQPLFEDKK-NPGVKFTSPVSGEVVAINR 81 (447)
T ss_pred CCCCceEeCcCCEEcCCCEeEecCC-CceEEEEcCCCeEEEEEec
Confidence 3345679999999999999998532 2578899999999999943
No 177
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=86.29 E-value=1.5 Score=46.06 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=42.0
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEec--ccceeeEecCCCeeEEEEeccCCCeecccCCeE
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIET--DKATLEFECLEEGYLAKILAPEGSKDVAVGQPI 284 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vet--dK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l 284 (622)
+-+...+++.||.|++||+|++|-. .....+|.||.+|+|.-+.. .-. |..|+.|
T Consensus 231 ~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~--~~~-v~~G~~l 287 (288)
T cd06254 231 SGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTA--TLP-VRKGDPL 287 (288)
T ss_pred CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeC--CCc-cCCCCcc
Confidence 4478889999999999999999943 23456899999999977643 233 6666654
No 178
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=85.69 E-value=1.2 Score=49.85 Aligned_cols=35 Identities=11% Similarity=0.126 Sum_probs=31.7
Q ss_pred eeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995 129 TVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED 164 (622)
Q Consensus 129 ~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~ 164 (622)
...|.++..|+|.++++++||. |+.|++|+.++..
T Consensus 59 ~~~vq~~~~G~v~~i~V~eG~~-V~~G~~L~~ld~~ 93 (457)
T TIGR01000 59 LSKIQSTSNNAIKENYLKENKF-VKKGDLLVVYDNG 93 (457)
T ss_pred eEEEEcCCCcEEEEEEcCCCCE-ecCCCEEEEECch
Confidence 4578899999999999999999 9999999999644
No 179
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=85.66 E-value=1.1 Score=48.89 Aligned_cols=43 Identities=26% Similarity=0.361 Sum_probs=32.7
Q ss_pred EEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995 122 EIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (622)
Q Consensus 122 ~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~ 165 (622)
.|....-...|.++.+|+|.++++++||. |+.|++|+.++...
T Consensus 36 ~v~~~~~~~~v~~~~~G~v~~i~V~eG~~-V~kG~~L~~ld~~~ 78 (423)
T TIGR01843 36 KVVPSGNVKVVQHLEGGIVREILVREGDR-VKAGQVLVELDATD 78 (423)
T ss_pred EEEECCCeeecccCCCcEEEEEEeCCCCE-ecCCCeEEEEccch
Confidence 34455556667888888888888888888 88888888886543
No 180
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=85.56 E-value=0.73 Score=51.33 Aligned_cols=44 Identities=34% Similarity=0.420 Sum_probs=35.6
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEe
Q 006995 101 GNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILV 145 (622)
Q Consensus 101 g~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~ 145 (622)
|.--+-.|++||+|..||.|++-... .+..|.||.+|+|+.|..
T Consensus 39 G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~~ 82 (448)
T PRK05352 39 GLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAINR 82 (448)
T ss_pred CCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEcc
Confidence 33456799999999999999964332 468899999999999943
No 181
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=85.20 E-value=1.2 Score=49.16 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=32.1
Q ss_pred eeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995 129 TVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (622)
Q Consensus 129 ~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~ 165 (622)
...|.++..|+|.++++++||. |+.|++|+.|+...
T Consensus 58 ~~~v~a~~~G~V~~i~V~eG~~-V~kGq~L~~l~~~~ 93 (421)
T TIGR03794 58 VDTIQSPGSGVVIDLDVEVGDQ-VKKGQVVARLFQPE 93 (421)
T ss_pred eeEEECCCCeEEEEEECCCcCE-ECCCCEEEEECcHH
Confidence 4488999999999999999999 99999999997653
No 182
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=85.18 E-value=0.74 Score=47.84 Aligned_cols=33 Identities=30% Similarity=0.359 Sum_probs=23.6
Q ss_pred eeEecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995 256 LEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (622)
Q Consensus 256 ~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~ 289 (622)
..|.++..|+|.+|+|++|+. |+.|++|+.|..
T Consensus 2 ~~Vq~~~~G~V~~i~V~eG~~-VkkGq~L~~LD~ 34 (305)
T PF00529_consen 2 KIVQSLVGGIVTEILVKEGQR-VKKGQVLARLDP 34 (305)
T ss_dssp EEE--SS-EEEEEE-S-TTEE-E-TTSECEEE--
T ss_pred EEEeCCCCeEEEEEEccCcCE-EeCCCEEEEEEe
Confidence 468899999999999999999 999999999953
No 183
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=84.82 E-value=15 Score=36.54 Aligned_cols=52 Identities=23% Similarity=0.302 Sum_probs=40.0
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeE
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPI 284 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l 284 (622)
+.|.. .+++|+.+++||.+..++-. .++++--|.+ .++.++.|+. |..|+.+
T Consensus 150 r~I~~-~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~k-V~~Getv 201 (206)
T PRK05305 150 RRIVC-YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQK-VVAGETV 201 (206)
T ss_pred cEEEE-eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCE-EEcccEE
Confidence 45554 45899999999999999976 3555555554 2789999999 9999854
No 184
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=84.48 E-value=1.3 Score=49.40 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=37.8
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEec
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILA 271 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~ 271 (622)
.|...+..|++||+|+.||+|++-... ...-|.||.+|+|.+|..
T Consensus 37 ~G~~~k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 37 VGMRPKMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR 81 (447)
T ss_pred CCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence 366677899999999999999987643 467899999999999953
No 185
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=84.27 E-value=1.1 Score=50.01 Aligned_cols=40 Identities=20% Similarity=0.216 Sum_probs=34.7
Q ss_pred EEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEE
Q 006995 104 AKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKIL 144 (622)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~ 144 (622)
.+-.|++||+|+.||.|++-+ ......|.||.+|+|++|.
T Consensus 43 ~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 43 AEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred CceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence 457899999999999999873 3368999999999999885
No 186
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=83.87 E-value=2.6 Score=44.37 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=32.6
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEe--cceeeEEecCCcEEEEEE
Q 006995 101 GNIAKWRKKEGDKIEIGDILCEIET--DKATVEFESLEEGFLAKI 143 (622)
Q Consensus 101 g~i~~w~v~~Gd~V~~g~~l~~vet--dK~~~~i~s~~~G~i~~~ 143 (622)
+=|....++.||.|++||+|++|-. .....++.||.+|+|.-+
T Consensus 239 ~Gi~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 239 GGLFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 3366788999999999999998853 123456899999998665
No 187
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=83.50 E-value=1.3 Score=49.40 Aligned_cols=43 Identities=26% Similarity=0.400 Sum_probs=36.6
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEe
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKIL 270 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~ 270 (622)
|...+..|++||+|+.||.|++-... ....|.||.+|+|.+|.
T Consensus 39 G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~ 81 (448)
T PRK05352 39 GLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAIN 81 (448)
T ss_pred CCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEc
Confidence 56667899999999999999966543 46789999999999994
No 188
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=83.03 E-value=1.2 Score=37.06 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=22.2
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEeccc
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDK 253 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK 253 (622)
-+.=+.++++.||.|++||+|++|-++.
T Consensus 30 ~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~ 57 (75)
T PF07831_consen 30 PAVGIELHKKVGDRVEKGDPLATIYAND 57 (75)
T ss_dssp TT-EEEESS-TTSEEBTTSEEEEEEESS
T ss_pred cCcCeEecCcCcCEECCCCeEEEEEcCC
Confidence 3455788999999999999999998764
No 189
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=82.34 E-value=1.2 Score=38.07 Aligned_cols=25 Identities=40% Similarity=0.803 Sum_probs=19.6
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEec
Q 006995 101 GNIAKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 101 g~i~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
.++ +|++++||.|++||+|++++-+
T Consensus 45 ~~v-~~~~~dG~~v~~g~~i~~i~G~ 69 (88)
T PF02749_consen 45 LEV-EWLVKDGDRVEPGDVILEIEGP 69 (88)
T ss_dssp EEE-EESS-TT-EEETTCEEEEEEEE
T ss_pred EEE-EEEeCCCCCccCCcEEEEEEeC
Confidence 344 7999999999999999999853
No 190
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=80.49 E-value=1.7 Score=48.45 Aligned_cols=43 Identities=21% Similarity=0.214 Sum_probs=36.2
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEe
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKIL 270 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~ 270 (622)
|.-.+..|++||+|+.||+|++.+ ......|.||.+|+|.+|.
T Consensus 40 g~~~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 40 GAPAEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred CCCCceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence 445567899999999999999984 3357899999999999984
No 191
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=80.40 E-value=1.2 Score=42.00 Aligned_cols=38 Identities=24% Similarity=0.291 Sum_probs=34.7
Q ss_pred CCCCeeecCCeeEEEecccceeeEecCCCeeEEEEecc
Q 006995 235 NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAP 272 (622)
Q Consensus 235 ~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~ 272 (622)
++|-.|.+||-++-+|.=|+..+|.+|.+|+|.+|.-+
T Consensus 89 e~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~ 126 (172)
T KOG3373|consen 89 EVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEK 126 (172)
T ss_pred CCCCccccCcceeeeeehhhhhhhhCcCCceEEEeccc
Confidence 56788999999999999999999999999999999643
No 192
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=79.88 E-value=2.8 Score=46.87 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=33.5
Q ss_pred EecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995 249 IETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (622)
Q Consensus 249 vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~ 289 (622)
|..+.-...|.++..|+|.+|+|++|+. |+.|++|+.+..
T Consensus 53 v~p~~~~~~vq~~~~G~v~~i~V~eG~~-V~~G~~L~~ld~ 92 (457)
T TIGR01000 53 IEPAKILSKIQSTSNNAIKENYLKENKF-VKKGDLLVVYDN 92 (457)
T ss_pred EEecCceEEEEcCCCcEEEEEEcCCCCE-ecCCCEEEEECc
Confidence 3333335678899999999999999999 999999999953
No 193
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=79.56 E-value=1.8 Score=45.91 Aligned_cols=38 Identities=29% Similarity=0.469 Sum_probs=32.0
Q ss_pred EeeeCCCCeeecCCeeEEEecccce--eeEecCCCeeEEEEec
Q 006995 231 KWRKNEGDKIEVGDVICEIETDKAT--LEFECLEEGYLAKILA 271 (622)
Q Consensus 231 ~w~v~~Gd~V~~gd~l~~vetdK~~--~~i~s~~~G~v~~i~~ 271 (622)
..+|++||.|++||+|+| ||-. +-++||.+|+|..|+-
T Consensus 42 ~mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~R 81 (447)
T COG1726 42 SMKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHR 81 (447)
T ss_pred cceeccCCeeeccceeee---cccCCCeEEeccCCceEEEeec
Confidence 457899999999999996 5643 5689999999999974
No 194
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=79.26 E-value=1.8 Score=48.38 Aligned_cols=38 Identities=24% Similarity=0.186 Sum_probs=34.9
Q ss_pred EEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEE
Q 006995 105 KWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKIL 144 (622)
Q Consensus 105 ~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~ 144 (622)
.-+|++||+|.+||+|.+=+. ....+.||.+|+|.+|.
T Consensus 46 ~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 46 ILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred ceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 568999999999999998765 78999999999999998
No 195
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=78.97 E-value=4.4 Score=42.44 Aligned_cols=46 Identities=30% Similarity=0.329 Sum_probs=36.6
Q ss_pred CCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995 117 GDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED 164 (622)
Q Consensus 117 g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~ 164 (622)
-.....++. .-...+.++..|.|.++++++||. |+.|++|+.++..
T Consensus 55 ~~~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~-Vk~Gq~L~~ld~~ 100 (372)
T COG0845 55 VRAPGRVEA-TRSVEVLARVAGIVAEILVKEGDR-VKKGQLLARLDPS 100 (372)
T ss_pred eeeeeEEEe-eeeeeEecccccEEEEEEccCCCe-ecCCCEEEEECCc
Confidence 334445554 334478888999999999999999 9999999999763
No 196
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=78.95 E-value=3 Score=46.10 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=32.1
Q ss_pred cceeeEecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995 253 KATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (622)
Q Consensus 253 K~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~ 289 (622)
.-...|.++.+|+|.++++++|+. |+.|++|+.|..
T Consensus 56 ~~~~~v~a~~~G~V~~i~V~eG~~-V~kGq~L~~l~~ 91 (421)
T TIGR03794 56 SGVDTIQSPGSGVVIDLDVEVGDQ-VKKGQVVARLFQ 91 (421)
T ss_pred CceeEEECCCCeEEEEEECCCcCE-ECCCCEEEEECc
Confidence 334578999999999999999999 999999999954
No 197
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=78.80 E-value=2.9 Score=45.63 Aligned_cols=43 Identities=23% Similarity=0.299 Sum_probs=36.3
Q ss_pred EEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995 247 CEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED 290 (622)
Q Consensus 247 ~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~ 290 (622)
..|........|.++.+|+|.+++|++|+. |+.|++|+.+...
T Consensus 35 G~v~~~~~~~~v~~~~~G~v~~i~V~eG~~-V~kG~~L~~ld~~ 77 (423)
T TIGR01843 35 GKVVPSGNVKVVQHLEGGIVREILVREGDR-VKAGQVLVELDAT 77 (423)
T ss_pred eEEEECCCeeecccCCCcEEEEEEeCCCCE-ecCCCeEEEEccc
Confidence 355566666778899999999999999999 9999999999543
No 198
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=77.97 E-value=44 Score=37.34 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=30.4
Q ss_pred EEEeeeechHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHhhc
Q 006995 436 YLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNV 478 (622)
Q Consensus 436 ~~~~evdvt~l~~~rk~~k~~~g~k~t~~~~iikAva~Al~~~ 478 (622)
+....++-+.+.++++.-|+. ++|++.+|..+++.||.+.
T Consensus 251 ~~~~~i~~~~~~~ll~~CR~~---~~TlT~~L~al~~~al~~~ 290 (480)
T PF07247_consen 251 YRSLSISPEELKKLLKACRKH---GTTLTALLHALIALALSKV 290 (480)
T ss_pred EEEEEECHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHhh
Confidence 445567777777777666433 7899999999999999973
No 199
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=76.41 E-value=2.8 Score=49.25 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=33.7
Q ss_pred EEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEE
Q 006995 104 AKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKIL 144 (622)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~ 144 (622)
.+-.|++||+|.+||+|++-+ .-.++.|.||.+|+|..|.
T Consensus 49 ~~~~V~~GD~V~~GQ~i~~~~-~~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 49 GELCVKVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred CcceeCcCCEEcCCCEeeecC-CCceeEEeCCCCeEEeeec
Confidence 457899999999999999653 2357899999999999885
No 200
>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase.
Probab=76.01 E-value=53 Score=36.24 Aligned_cols=90 Identities=18% Similarity=0.223 Sum_probs=52.4
Q ss_pred EEEeeeechHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCCccEEEEEecCC-------
Q 006995 436 YLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEK------- 508 (622)
Q Consensus 436 ~~~~evdvt~l~~~rk~~k~~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~------- 508 (622)
+....+++..|.+..+.. +.|+|++++-|++.+|.++ ++.. ++ .....+.+++.|+...
T Consensus 231 ~~~~~~~~~~l~~~a~~~------g~T~ndvllaa~~~al~~~--~~~~-----~~-~~~~~i~~~~pv~~R~~~~~~~~ 296 (446)
T TIGR02946 231 FAAQSLPLADVKAVAKAF------GVTINDVVLAAVAGALRRY--LEER-----GE-LPDDPLVAMVPVSLRPMEDDSEG 296 (446)
T ss_pred EEeeccCHHHHHHHHHHh------CCCHHHHHHHHHHHHHHHH--HHHc-----CC-CCCCceEEEEeeeccccccCCCC
Confidence 446677777777665554 7899999999999999875 2221 11 1223467777776321
Q ss_pred ----CeEEeeeccCCCCCHHHHHHHHHHHHHHHHcC
Q 006995 509 ----GLMTPIVRNADQKSISAISMEVKELAEKARAG 540 (622)
Q Consensus 509 ----GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g 540 (622)
|++...+. .+..+..+...++++-+..+|+.
T Consensus 297 ~N~~~~~~~~l~-~~~~~~~~~l~~v~~~~~~~k~~ 331 (446)
T TIGR02946 297 GNQVSAVLVPLP-TGIADPVERLSAIHASMTRAKES 331 (446)
T ss_pred CCEEEEEEecCC-CCCCCHHHHHHHHHHHHHHHHHh
Confidence 22222222 23344555556666655555554
No 201
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=75.53 E-value=6.5 Score=41.36 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=34.7
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEecc--cceeeEecCCCeeEEEE
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIETD--KATLEFECLEEGYLAKI 269 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetd--K~~~~i~s~~~G~v~~i 269 (622)
+=+....++.||.|++||.|++|-.- ....++.||.+|+|..+
T Consensus 239 ~Gi~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 239 GGLFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 44778889999999999999999652 22456899999998766
No 202
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=75.42 E-value=4.7 Score=41.97 Aligned_cols=58 Identities=28% Similarity=0.433 Sum_probs=44.7
Q ss_pred EEEEEEecCCCeeecCCeE--EEEE-e-cceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995 102 NIAKWRKKEGDKIEIGDIL--CEIE-T-DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (622)
Q Consensus 102 ~i~~w~v~~Gd~V~~g~~l--~~ve-t-dK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~ 162 (622)
=+..+.++.||.|++||+| ..+= . +-...+|.+|.+|+| +.....-. |..|+.|+.+.
T Consensus 229 G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~i--i~~~~~~~-v~~G~~l~~v~ 290 (292)
T PF04952_consen 229 GLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGII--IFIRESPY-VEQGDALAKVA 290 (292)
T ss_dssp EEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEE--ESECTSSE-CTTTEEEEEEE
T ss_pred EEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEE--EEeCcccc-cCCCCeEEEEe
Confidence 3569999999999999999 5442 1 233568999999999 44556666 88999998874
No 203
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=75.19 E-value=5.2 Score=39.32 Aligned_cols=53 Identities=28% Similarity=0.355 Sum_probs=41.4
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEE
Q 006995 101 GNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIA 159 (622)
Q Consensus 101 g~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~ 159 (622)
+.|.. ++++|+.|++||.+.-++-. .++++-.|.+ .++.+++|+. |..|+.|.
T Consensus 130 ~~i~~-~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~-V~~G~tli 182 (189)
T TIGR00164 130 RRIVC-YVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEK-VTAGETVL 182 (189)
T ss_pred cEEEE-ecCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCE-EEeceEEE
Confidence 34533 45899999999999999876 5566666655 3788999999 99999763
No 204
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=74.93 E-value=2.7 Score=38.48 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=23.4
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEec
Q 006995 100 QGNIAKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 100 eg~i~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
+|+=.+|++++||+|++||+|+++.-+
T Consensus 78 ~g~gF~~~vk~Gd~V~~G~~l~~~D~~ 104 (124)
T cd00210 78 NGEGFTSHVEEGQRVKQGDKLLEFDLP 104 (124)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHH
Confidence 356679999999999999999998754
No 205
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=74.54 E-value=5.2 Score=39.84 Aligned_cols=52 Identities=29% Similarity=0.334 Sum_probs=40.9
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeE
Q 006995 101 GNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPI 158 (622)
Q Consensus 101 g~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l 158 (622)
+.|.. ++++|+.|++||.+.-++-. .++++--|.+ .++.++.||. |..|+.+
T Consensus 150 r~I~~-~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~k-V~~Getv 201 (206)
T PRK05305 150 RRIVC-YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQK-VVAGETV 201 (206)
T ss_pred cEEEE-eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCE-EEcccEE
Confidence 34533 56899999999999999876 4566666655 3889999999 9999854
No 206
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=74.29 E-value=5.9 Score=46.64 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=35.6
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEe
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKIL 270 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~ 270 (622)
|.-.+..|++||+|.+||+|++-.. -....|.||.+|+|..|.
T Consensus 46 G~~~~~~V~~GD~V~~GQ~i~~~~~-~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 46 GAEGELCVKVGDRVLKGQPLTQGDG-RMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred CCCCcceeCcCCEEcCCCEeeecCC-CceeEEeCCCCeEEeeec
Confidence 4556689999999999999996642 246889999999999984
No 207
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=74.11 E-value=4 Score=44.04 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=32.2
Q ss_pred eeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995 129 TVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (622)
Q Consensus 129 ~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~ 165 (622)
.+.|.+.++|+|.++++.+++. |+.|++|+.|++..
T Consensus 53 vv~Iap~VsG~V~eV~V~dnq~-Vk~Gd~L~~iD~~~ 88 (352)
T COG1566 53 VVPIAPQVSGRVTEVNVKDNQL-VKKGDVLFRIDPRD 88 (352)
T ss_pred EEEEcCcCceEEEEEEecCCCE-ecCCCeEEEECcHH
Confidence 4578899999999999999999 99999999997543
No 208
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=74.09 E-value=6.7 Score=37.29 Aligned_cols=28 Identities=39% Similarity=0.459 Sum_probs=24.5
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEecce
Q 006995 101 GNIAKWRKKEGDKIEIGDILCEIETDKA 128 (622)
Q Consensus 101 g~i~~w~v~~Gd~V~~g~~l~~vetdK~ 128 (622)
|+--+-+|++||+|++||+|+++.-|+.
T Consensus 86 GegF~~~v~~Gd~Vk~Gd~Li~fDl~~I 113 (156)
T COG2190 86 GEGFESLVKEGDKVKAGDPLLEFDLDLI 113 (156)
T ss_pred CcceEEEeeCCCEEccCCEEEEECHHHH
Confidence 6677899999999999999999987643
No 209
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=73.97 E-value=2.1 Score=38.96 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=23.3
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEecc
Q 006995 100 QGNIAKWRKKEGDKIEIGDILCEIETDK 127 (622)
Q Consensus 100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK 127 (622)
+|+=-+++|++||+|++||+|+++.-++
T Consensus 78 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~ 105 (121)
T TIGR00830 78 NGEGFTSHVEEGQRVKKGDPLLEFDLKA 105 (121)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHHH
Confidence 3555789999999999999999987543
No 210
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=71.95 E-value=3.3 Score=35.33 Aligned_cols=26 Identities=46% Similarity=0.788 Sum_probs=20.2
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEecc
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIETD 252 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetd 252 (622)
+--++|++++|+.|++||+|++++-+
T Consensus 44 ~~~v~~~~~dG~~v~~g~~i~~i~G~ 69 (88)
T PF02749_consen 44 GLEVEWLVKDGDRVEPGDVILEIEGP 69 (88)
T ss_dssp TEEEEESS-TT-EEETTCEEEEEEEE
T ss_pred cEEEEEEeCCCCCccCCcEEEEEEeC
Confidence 34567999999999999999999853
No 211
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=71.32 E-value=3.7 Score=46.00 Aligned_cols=42 Identities=21% Similarity=0.198 Sum_probs=36.8
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEe
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKIL 270 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~ 270 (622)
|.=....|++||+|.+||+|.+-+. ...-+.||.+|+|.+|.
T Consensus 42 g~~~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 42 GAPGILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred CCccceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 3335778999999999999998886 67889999999999996
No 212
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=70.50 E-value=4.6 Score=43.62 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=31.8
Q ss_pred EEecCCcEEEEEEEecCCCccccCCCeEEEEEcCCc
Q 006995 131 EFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDAD 166 (622)
Q Consensus 131 ~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~~ 166 (622)
.|.||++|+|.++.++.|+. |.+|++|+.+.+...
T Consensus 210 ~IrAP~dG~V~~~~v~~G~~-V~~G~~l~alVp~~~ 244 (352)
T COG1566 210 VIRAPVDGYVTNLSVRVGQY-VSAGTPLMALVPLDS 244 (352)
T ss_pred EEECCCCceEEeecccCCCe-ecCCCceEEEecccc
Confidence 48999999999999999999 999999999976544
No 213
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=69.73 E-value=8.4 Score=37.24 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=24.1
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEecc
Q 006995 100 QGNIAKWRKKEGDKIEIGDILCEIETDK 127 (622)
Q Consensus 100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK 127 (622)
+|+=-+++|++||+|++||+|+++.-+.
T Consensus 100 ~G~gF~~~Vk~Gd~Vk~G~~L~~~D~~~ 127 (169)
T PRK09439 100 KGEGFKRIAEEGQRVKVGDPIIEFDLPL 127 (169)
T ss_pred CCCceEEEecCCCEEeCCCEEEEEcHHH
Confidence 3566799999999999999999998653
No 214
>PRK09294 acyltransferase PapA5; Provisional
Probab=69.68 E-value=69 Score=35.02 Aligned_cols=91 Identities=20% Similarity=0.259 Sum_probs=49.9
Q ss_pred CccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCCccEEEEEec-------------CC--CeEEeeeccCCCCCHH
Q 006995 460 KVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVAT-------------EK--GLMTPIVRNADQKSIS 524 (622)
Q Consensus 460 k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~-------------~~--GL~~pvI~~a~~~sl~ 524 (622)
++|++.++.-|++.++.+.-... + ..+.+++.|+. .+ |+....+.-....++.
T Consensus 229 ~~t~~~~l~Aa~~~~l~r~~~~~-----~-------~~i~~~~pv~~R~~l~p~~~~~~~~n~~g~~~~~~~~~~~~sf~ 296 (416)
T PRK09294 229 RLTVNALVSAAILLAEWQLRRTP-----H-------VPLPYVYPVDLRFRLTPPVAATEGTNLLGAATYLAEIGPDTDIV 296 (416)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCC-----C-------CceeeecchhhHhhcCCCCCcccceeeEeeeeeeccccCCCCHH
Confidence 68999999999999987642110 0 01122233321 00 1111122323456999
Q ss_pred HHHHHHHHHHHHHHc-CCCC--CCc----cCC------CcEEEEeCCCCCc
Q 006995 525 AISMEVKELAEKARA-GKLA--PHE----FQG------GTFSISNLGMFPV 562 (622)
Q Consensus 525 eia~~~~~l~~~ar~-g~l~--~~d----~~g------gtftISNlG~~G~ 562 (622)
++++++++-.....+ +.+. ..+ +.+ .++++||+|.++.
T Consensus 297 ela~~v~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~v~~Snlg~~~~ 347 (416)
T PRK09294 297 DLARAIAATLRADLADGVIQQSFLHFGTAFEGTPPGLPPVVFITNLGVAPP 347 (416)
T ss_pred HHHHHHHHHHhhhhhcceeeehhhcccccccCCCCCCCCeEEEecCCcCCC
Confidence 999999876553332 3211 111 111 3799999999964
No 215
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=68.20 E-value=11 Score=34.62 Aligned_cols=45 Identities=20% Similarity=0.312 Sum_probs=33.6
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEecceeeE-EecCCcEEEEEE
Q 006995 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVE-FESLEEGFLAKI 143 (622)
Q Consensus 99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~-i~s~~~G~i~~~ 143 (622)
.||-++.-.+..|++|.+||+++-+.|-|-.+. +++|.+|++.-+
T Consensus 98 vEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi 143 (161)
T COG4072 98 VEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYI 143 (161)
T ss_pred cCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEE
Confidence 367777777778888888888888888877766 567788877544
No 216
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=68.05 E-value=2.5 Score=39.10 Aligned_cols=29 Identities=34% Similarity=0.448 Sum_probs=21.6
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEecce
Q 006995 100 QGNIAKWRKKEGDKIEIGDILCEIETDKA 128 (622)
Q Consensus 100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~ 128 (622)
+|+--+|+|++||+|++||+|+++.-++.
T Consensus 82 ~G~gF~~~v~~G~~V~~G~~L~~~D~~~i 110 (132)
T PF00358_consen 82 NGEGFETLVKEGDKVKAGQPLIEFDLEKI 110 (132)
T ss_dssp TTTTEEESS-TTSEE-TTEEEEEE-HHHH
T ss_pred CCcceEEEEeCCCEEECCCEEEEEcHHHH
Confidence 35567999999999999999999976543
No 217
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=66.59 E-value=14 Score=38.38 Aligned_cols=59 Identities=25% Similarity=0.375 Sum_probs=45.5
Q ss_pred ceeeEeeeCCCCeeecCCee--EEEec--ccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEe
Q 006995 227 GNIAKWRKNEGDKIEVGDVI--CEIET--DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV 288 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l--~~vet--dK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~ 288 (622)
+-+....++.||.|++||+| .++-. +-...++.+|.+|+|.-+ .+... |..|+.|+.+.
T Consensus 228 ~G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii~~--~~~~~-v~~G~~l~~v~ 290 (292)
T PF04952_consen 228 GGLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIIIFI--RESPY-VEQGDALAKVA 290 (292)
T ss_dssp SEEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEESE--CTSSE-CTTTEEEEEEE
T ss_pred cEEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEEEe--Ccccc-cCCCCeEEEEe
Confidence 45778899999999999999 54432 223458999999998554 56666 99999998774
No 218
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=65.71 E-value=7.6 Score=45.18 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=24.6
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEecce
Q 006995 100 QGNIAKWRKKEGDKIEIGDILCEIETDKA 128 (622)
Q Consensus 100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~ 128 (622)
+|+=-+.+|++||+|++||+|+++.-++.
T Consensus 542 ~g~gF~~~v~~g~~V~~G~~l~~~d~~~i 570 (610)
T TIGR01995 542 NGEGFEILVKVGDHVKAGQLLLTFDLDKI 570 (610)
T ss_pred CCCCeEEEecCcCEEcCCCEEEEecHHHH
Confidence 46667999999999999999999986543
No 219
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=65.48 E-value=18 Score=48.16 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=16.0
Q ss_pred EEEeccCCCeecccCCeEEEE
Q 006995 267 AKILAPEGSKDVAVGQPIAIT 287 (622)
Q Consensus 267 ~~i~~~~g~~~v~vG~~l~~i 287 (622)
..+.|++||. |..|+.|..=
T Consensus 2704 ~~~~v~~gd~-v~~G~~l~~G 2723 (2890)
T PRK09603 2704 KQILVHADEF-VHAGEAMTDG 2723 (2890)
T ss_pred ceeeecCCCE-EccCCCcCCC
Confidence 3678889998 9999988654
No 220
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=64.39 E-value=14 Score=35.78 Aligned_cols=21 Identities=43% Similarity=0.528 Sum_probs=18.3
Q ss_pred EEEeccCCCeecccCCeEEEEe
Q 006995 267 AKILAPEGSKDVAVGQPIAITV 288 (622)
Q Consensus 267 ~~i~~~~g~~~v~vG~~l~~i~ 288 (622)
=+.++++|+. |+.||+|+.+.
T Consensus 104 F~~~Vk~Gd~-Vk~G~~L~~~D 124 (169)
T PRK09439 104 FKRIAEEGQR-VKVGDPIIEFD 124 (169)
T ss_pred eEEEecCCCE-EeCCCEEEEEc
Confidence 3778999999 99999999884
No 221
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=62.68 E-value=16 Score=38.10 Aligned_cols=43 Identities=28% Similarity=0.326 Sum_probs=34.3
Q ss_pred eeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995 245 VICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (622)
Q Consensus 245 ~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~ 289 (622)
....++. .....+.++..|.|.++++++|+. |+.|++|+.+..
T Consensus 57 ~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~-Vk~Gq~L~~ld~ 99 (372)
T COG0845 57 APGRVEA-TRSVEVLARVAGIVAEILVKEGDR-VKKGQLLARLDP 99 (372)
T ss_pred eeeEEEe-eeeeeEecccccEEEEEEccCCCe-ecCCCEEEEECC
Confidence 3344444 333478888999999999999999 999999999964
No 222
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=62.35 E-value=18 Score=34.49 Aligned_cols=28 Identities=32% Similarity=0.437 Sum_probs=24.7
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEecccc
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIETDKA 254 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~ 254 (622)
|+-=+.++++||+|++||+|+++.-|+.
T Consensus 86 GegF~~~v~~Gd~Vk~Gd~Li~fDl~~I 113 (156)
T COG2190 86 GEGFESLVKEGDKVKAGDPLLEFDLDLI 113 (156)
T ss_pred CcceEEEeeCCCEEccCCEEEEECHHHH
Confidence 6677889999999999999999988754
No 223
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=62.18 E-value=14 Score=34.04 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=37.2
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccceee-EecCCCeeEEEE
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLE-FECLEEGYLAKI 269 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~-i~s~~~G~v~~i 269 (622)
||-++-.-+..|+.|.+||+++-+.|-|-.+- +++|.+|++.-+
T Consensus 99 EGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi 143 (161)
T COG4072 99 EGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYI 143 (161)
T ss_pred CcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEE
Confidence 67788888889999999999999999998775 678888888665
No 224
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=60.72 E-value=12 Score=36.97 Aligned_cols=68 Identities=25% Similarity=0.286 Sum_probs=46.7
Q ss_pred EecCCCCCCCceEEEEEEEe-cCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEE
Q 006995 89 VGMPALSPTMSQGNIAKWRK-KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAI 160 (622)
Q Consensus 89 ~~~p~~g~~~~eg~i~~w~v-~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~ 160 (622)
+.|=.+|.. .-|.|.-|.. ++|+.|++||.+.-++= =.++.+--|.+- +.+..++.|+. |..|+.|++
T Consensus 134 v~~v~Vga~-~v~~I~~~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~~-~~~~~v~~g~~-V~~Ge~i~~ 202 (202)
T PF02666_consen 134 VAVVQVGAL-LVGSIVLTVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKDK-IFEWSVKPGQK-VRAGETIGY 202 (202)
T ss_pred EEEEEeccc-eeceeEEEecccCCCEEecCcEeCEEec-CCeEEEEEeCCC-ccccccCCCCE-EEeeeEEeC
Confidence 344445544 3366755554 69999999999999885 334444433332 33899999999 999999873
No 225
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=60.47 E-value=8.3 Score=40.06 Aligned_cols=24 Identities=42% Similarity=0.808 Sum_probs=21.4
Q ss_pred EEEEEecCCCeeecCCeEEEEEec
Q 006995 103 IAKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 103 i~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
-..|++++||+|+.||+|+++|-+
T Consensus 65 ~~~~~~~DG~~v~~g~~i~~~~G~ 88 (280)
T COG0157 65 EIQWLVKDGDRVKPGDVLAEIEGP 88 (280)
T ss_pred EEEEEcCCCCEeCCCCEEEEEecc
Confidence 348999999999999999999864
No 226
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=58.94 E-value=12 Score=43.68 Aligned_cols=28 Identities=29% Similarity=0.499 Sum_probs=23.8
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEecc
Q 006995 100 QGNIAKWRKKEGDKIEIGDILCEIETDK 127 (622)
Q Consensus 100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK 127 (622)
+|+=-+++|++||+|++||+|++++-++
T Consensus 558 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~ 585 (627)
T PRK09824 558 DGKFFTAHVNVGDKVNTGDLLIEFDIPA 585 (627)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHH
Confidence 3555689999999999999999998653
No 227
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=56.93 E-value=8 Score=35.26 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=23.3
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEeccc
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIETDK 253 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK 253 (622)
|+--++++++||+|++||+|+++.-++
T Consensus 79 G~gF~~~v~~Gd~V~~G~~l~~~D~~~ 105 (121)
T TIGR00830 79 GEGFTSHVEEGQRVKKGDPLLEFDLKA 105 (121)
T ss_pred CCceEEEecCCCEEcCCCEEEEEcHHH
Confidence 556788999999999999999998654
No 228
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=56.51 E-value=10 Score=34.67 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=23.9
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEeccc
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDK 253 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK 253 (622)
+|+--++++++||.|++||+|+++.-+.
T Consensus 78 ~g~gF~~~vk~Gd~V~~G~~l~~~D~~~ 105 (124)
T cd00210 78 NGEGFTSHVEEGQRVKQGDKLLEFDLPA 105 (124)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHHH
Confidence 3666789999999999999999998654
No 229
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=55.21 E-value=22 Score=34.92 Aligned_cols=53 Identities=25% Similarity=0.366 Sum_probs=40.5
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEE
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIA 285 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~ 285 (622)
+.|..| +++|+.+++||.+.-++-. .++++--|.+ .++.++.|+. |..|+.|.
T Consensus 130 ~~i~~~-~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~-V~~G~tli 182 (189)
T TIGR00164 130 RRIVCY-VKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEK-VTAGETVL 182 (189)
T ss_pred cEEEEe-cCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCE-EEeceEEE
Confidence 345444 4899999999999999976 4555555654 3788999999 99999764
No 230
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=52.18 E-value=7.1 Score=36.18 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=21.8
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEeccc
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDK 253 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK 253 (622)
+|+--++++++||+|++||+|+++.-++
T Consensus 82 ~G~gF~~~v~~G~~V~~G~~L~~~D~~~ 109 (132)
T PF00358_consen 82 NGEGFETLVKEGDKVKAGQPLIEFDLEK 109 (132)
T ss_dssp TTTTEEESS-TTSEE-TTEEEEEE-HHH
T ss_pred CCcceEEEEeCCCEEECCCEEEEEcHHH
Confidence 3677889999999999999999998765
No 231
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=51.11 E-value=20 Score=42.00 Aligned_cols=29 Identities=24% Similarity=0.349 Sum_probs=24.2
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEecce
Q 006995 100 QGNIAKWRKKEGDKIEIGDILCEIETDKA 128 (622)
Q Consensus 100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~ 128 (622)
+|+=-+.+|++||+|++||+|+++.-++.
T Consensus 578 ~G~gF~~~Vk~Gd~V~~G~~l~~~D~~~i 606 (648)
T PRK10255 578 EGKGFKRLVEEGAQVSAGQPILEMDLDYL 606 (648)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHHH
Confidence 35567899999999999999999987644
No 232
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=48.33 E-value=24 Score=36.65 Aligned_cols=55 Identities=25% Similarity=0.331 Sum_probs=40.2
Q ss_pred EEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995 102 NIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (622)
Q Consensus 102 ~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i 161 (622)
.|..|. .+|+.|++||.+.-++-. .++.+--|. |.+ ++.++.|+. |..|+.|+.|
T Consensus 211 ~i~~~~-~~~~~v~kGee~G~F~fG-STVvllf~~-~~~-~~~v~~g~~-V~~Ge~ig~~ 265 (265)
T PRK03934 211 FIQTYE-YENLKLKKGEELGNFEMG-STIVLFSQK-GSL-EFNLKAGKS-VKFGESIGEI 265 (265)
T ss_pred ceeeec-cCCceEccccEeeEEccC-CEEEEEEeC-Ccc-eEccCCCCE-EEcchhhccC
Confidence 344454 459999999999999865 455544443 334 778999999 9999999754
No 233
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.68 E-value=19 Score=37.69 Aligned_cols=23 Identities=26% Similarity=0.598 Sum_probs=21.0
Q ss_pred EEEEecCCCeeecCCeEEEEEec
Q 006995 104 AKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
++|++++|+.|+.||+|++++-+
T Consensus 66 v~~~~~dG~~v~~g~~i~~~~G~ 88 (277)
T PRK08072 66 VELHKKDGDLVKKGEIIATVQGP 88 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEEEC
Confidence 49999999999999999999854
No 234
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=45.98 E-value=51 Score=41.55 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=30.8
Q ss_pred EEecCCCeeecCCeEEEEEe-------cceeeEEecCCcEEE
Q 006995 106 WRKKEGDKIEIGDILCEIET-------DKATVEFESLEEGFL 140 (622)
Q Consensus 106 w~v~~Gd~V~~g~~l~~vet-------dK~~~~i~s~~~G~i 140 (622)
.||+.|++|+.+|+|+|+-+ +|+.-.|.|+.+|.|
T Consensus 405 l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~K~IySdlsGEI 446 (1331)
T PRK02597 405 LFVDDGQTVEADQLLAEVAAGAVKKSTEKATKDVICDLAGEV 446 (1331)
T ss_pred EEEECCcEEecCcEEEEeecCCcccceeEEEEEEecCCceEE
Confidence 58999999999999999986 356778999999987
No 235
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=45.80 E-value=33 Score=38.70 Aligned_cols=41 Identities=24% Similarity=0.435 Sum_probs=34.5
Q ss_pred EecccceeeEecCCCeeEEEE------------------------eccCCCeecccCCeEEEEecC
Q 006995 249 IETDKATLEFECLEEGYLAKI------------------------LAPEGSKDVAVGQPIAITVED 290 (622)
Q Consensus 249 vetdK~~~~i~s~~~G~v~~i------------------------~~~~g~~~v~vG~~l~~i~~~ 290 (622)
+..-+-+.+|.|+.+|+|..| +++.|+. |+.|++|+.|..+
T Consensus 407 ~~~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~-V~~Gd~l~~i~a~ 471 (493)
T TIGR02645 407 IEAGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQ-VKKGDPLYTIYAE 471 (493)
T ss_pred cCCCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCE-ecCCCeEEEEECC
Confidence 444566788999999999887 8899999 9999999999743
No 236
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.73 E-value=22 Score=37.21 Aligned_cols=23 Identities=26% Similarity=0.526 Sum_probs=21.0
Q ss_pred EEEEecCCCeeecCCeEEEEEec
Q 006995 104 AKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
++|++++|+.|+.||+|++++-+
T Consensus 67 v~~~~~dG~~v~~G~~i~~~~G~ 89 (281)
T PRK06543 67 VTLAVADGERFEAGDILATVTGP 89 (281)
T ss_pred EEEEeCCCCEecCCCEEEEEEec
Confidence 49999999999999999999854
No 237
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=44.16 E-value=33 Score=33.92 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=40.9
Q ss_pred cceeeEeee-CCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEE
Q 006995 226 QGNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAI 286 (622)
Q Consensus 226 eg~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~ 286 (622)
-+.|.-+.. ++|+.|++||.+..++- -.++.+--|. +.+.++.++.|+. |..|+.|++
T Consensus 144 v~~I~~~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~-~~~~~~~v~~g~~-V~~Ge~i~~ 202 (202)
T PF02666_consen 144 VGSIVLTVDPKEGDEVKKGEELGYFRF-GSTVVLLFPK-DKIFEWSVKPGQK-VRAGETIGY 202 (202)
T ss_pred eceeEEEecccCCCEEecCcEeCEEec-CCeEEEEEeC-CCccccccCCCCE-EEeeeEEeC
Confidence 356665554 69999999999999886 3333333232 2233889999998 999999863
No 238
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=43.72 E-value=50 Score=35.86 Aligned_cols=70 Identities=26% Similarity=0.305 Sum_probs=46.1
Q ss_pred EecCCCCCCCceEEEEEE--EecCCCeeecCCeEEEEE-ecceeeEE--ecCCcEEEEEEEecCCCccccCCCeEEEEEc
Q 006995 89 VGMPALSPTMSQGNIAKW--RKKEGDKIEIGDILCEIE-TDKATVEF--ESLEEGFLAKILVPEGSKDVPVGQPIAITVE 163 (622)
Q Consensus 89 ~~~p~~g~~~~eg~i~~w--~v~~Gd~V~~g~~l~~ve-tdK~~~~i--~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~ 163 (622)
+.+|.|... +.++| .+|+||.|..||.+.+|. +.-....| +.-..|+|+.+ +.+|+. .+-++++.++.
T Consensus 38 ~~~~~ld~~----~~w~f~p~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~~-~~~g~~--~~~~~~~~~~~ 110 (369)
T cd01134 38 VNVPALDRD----KKWDFKPLVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYI-APAGDY--TVDDVILEVEF 110 (369)
T ss_pred CCCCCCCCC----CeeeeEeccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEEE-ecCCCe--eEEEEEEEEEe
Confidence 456666543 22222 468999999999999886 33344445 44458999664 566763 67788888875
Q ss_pred CC
Q 006995 164 DA 165 (622)
Q Consensus 164 ~~ 165 (622)
++
T Consensus 111 ~g 112 (369)
T cd01134 111 DG 112 (369)
T ss_pred CC
Confidence 33
No 239
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=43.70 E-value=32 Score=40.09 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=25.0
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccc
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKA 254 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~ 254 (622)
+|+--+.+|++||+|++||+|+++.-++.
T Consensus 542 ~g~gF~~~v~~g~~V~~G~~l~~~d~~~i 570 (610)
T TIGR01995 542 NGEGFEILVKVGDHVKAGQLLLTFDLDKI 570 (610)
T ss_pred CCCCeEEEecCcCEEcCCCEEEEecHHHH
Confidence 36677899999999999999999987654
No 240
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=43.60 E-value=26 Score=36.22 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=33.4
Q ss_pred ecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEE
Q 006995 108 KKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAI 160 (622)
Q Consensus 108 v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~ 160 (622)
..+|+.|++||.+.-++-. .++.+--|.+-+--...+.+|+. |..|+.|+.
T Consensus 207 ~~~g~~v~kGee~G~F~fG-Stvvllf~~~~~~~~~~~~~g~~-V~~Ge~ig~ 257 (259)
T PRK03140 207 THERDTVQKGEEMAYFSFG-STVVLLFEKDMIEPDQELKSGQE-VRLGEKIGT 257 (259)
T ss_pred ecCCCEEecCcEeeeeccC-CeEEEEEeCCccccchhhcCCCE-EEcChhhcc
Confidence 3578888888888888766 55555544432222445677777 888887765
No 241
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=43.59 E-value=25 Score=36.54 Aligned_cols=26 Identities=35% Similarity=0.726 Sum_probs=22.1
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEec
Q 006995 101 GNIAKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 101 g~i~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
+--++|++++|+.|+.||+|++++-+
T Consensus 57 ~l~v~~~~~dG~~v~~g~~i~~i~G~ 82 (268)
T cd01572 57 GIEVEWLVKDGDRVEPGQVLATVEGP 82 (268)
T ss_pred CeEEEEEeCCCCEecCCCEEEEEEEC
Confidence 33459999999999999999999854
No 242
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.34 E-value=24 Score=36.91 Aligned_cols=23 Identities=17% Similarity=0.640 Sum_probs=21.3
Q ss_pred EEEEecCCCeeecCCeEEEEEec
Q 006995 104 AKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
++|++++|+.|++||+|++++-+
T Consensus 68 ~~~~~~dG~~v~~g~~i~~i~G~ 90 (277)
T PRK05742 68 VHWQVADGERVSANQVLFHLEGP 90 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEEEc
Confidence 69999999999999999999864
No 243
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=42.77 E-value=24 Score=36.99 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=20.2
Q ss_pred EEEEecCCCeeecCCeEEEEEe
Q 006995 104 AKWRKKEGDKIEIGDILCEIET 125 (622)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~vet 125 (622)
++|++++|+.|++||+|++++-
T Consensus 63 v~~~~~dG~~v~~G~~i~~~~G 84 (284)
T PRK06096 63 IDDAVSDGSQANAGQRLISAQG 84 (284)
T ss_pred EEEEeCCCCEeCCCCEEEEEEe
Confidence 4999999999999999999875
No 244
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=42.10 E-value=20 Score=39.89 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=18.4
Q ss_pred EEEEecCCCeeecCCeEEEEE
Q 006995 104 AKWRKKEGDKIEIGDILCEIE 124 (622)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~ve 124 (622)
+.|+++.||+|++||+|++|-
T Consensus 382 i~l~~k~Gd~V~~Gd~l~~i~ 402 (437)
T TIGR02643 382 LTDLLPLGDRVEKGEPLAVVH 402 (437)
T ss_pred eEeccCCcCEeCCCCeEEEEE
Confidence 578999999999999999886
No 245
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=41.97 E-value=39 Score=38.16 Aligned_cols=41 Identities=22% Similarity=0.440 Sum_probs=34.0
Q ss_pred EEecceeeEEecCCcEEE------------------------EEEEecCCCccccCCCeEEEEEcC
Q 006995 123 IETDKATVEFESLEEGFL------------------------AKILVPEGSKDVPVGQPIAITVED 164 (622)
Q Consensus 123 vetdK~~~~i~s~~~G~i------------------------~~~~~~~g~~~v~~G~~l~~i~~~ 164 (622)
+..-+.+.+|.|+.+|+| ..++.+.||. |..|++|++|..+
T Consensus 407 ~~~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~-V~~Gd~l~~i~a~ 471 (493)
T TIGR02645 407 IEAGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQ-VKKGDPLYTIYAE 471 (493)
T ss_pred cCCCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCE-ecCCCeEEEEECC
Confidence 444567888999999998 4578999999 9999999999743
No 246
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=41.81 E-value=20 Score=39.91 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=19.5
Q ss_pred EEEEEecCCCeeecCCeEEEEEe
Q 006995 103 IAKWRKKEGDKIEIGDILCEIET 125 (622)
Q Consensus 103 i~~w~v~~Gd~V~~g~~l~~vet 125 (622)
=+.|+++.||+|++||+||+|-+
T Consensus 382 Gi~l~~k~G~~V~~Gd~l~~i~~ 404 (440)
T PRK05820 382 GLTLHARLGDRVDAGEPLATLHA 404 (440)
T ss_pred CeEEccCCcCEECCCCeEEEEeC
Confidence 35899999999999999998873
No 247
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=41.42 E-value=27 Score=36.31 Aligned_cols=24 Identities=38% Similarity=0.782 Sum_probs=21.3
Q ss_pred EEEEEecCCCeeecCCeEEEEEec
Q 006995 103 IAKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 103 i~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
=++|++++|+.|+.|++|++++-+
T Consensus 58 ~v~~~~~dG~~v~~g~~i~~i~G~ 81 (269)
T cd01568 58 EVEWLVKDGDRVEAGQVLLEVEGP 81 (269)
T ss_pred EEEEEeCCCCEecCCCEEEEEEEc
Confidence 348999999999999999999864
No 248
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=41.24 E-value=23 Score=36.89 Aligned_cols=25 Identities=36% Similarity=0.706 Sum_probs=21.7
Q ss_pred eeeEeeeCCCCeeecCCeeEEEecc
Q 006995 228 NIAKWRKNEGDKIEVGDVICEIETD 252 (622)
Q Consensus 228 ~i~~w~v~~Gd~V~~gd~l~~vetd 252 (622)
--..|++++||.|+.||+|++++-+
T Consensus 64 i~~~~~~~DG~~v~~g~~i~~~~G~ 88 (280)
T COG0157 64 IEIQWLVKDGDRVKPGDVLAEIEGP 88 (280)
T ss_pred eEEEEEcCCCCEeCCCCEEEEEecc
Confidence 3457999999999999999999854
No 249
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=40.56 E-value=23 Score=39.42 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=21.9
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEecc
Q 006995 101 GNIAKWRKKEGDKIEIGDILCEIETDK 127 (622)
Q Consensus 101 g~i~~w~v~~Gd~V~~g~~l~~vetdK 127 (622)
+-=+.|+++.||+|++||+||+|-+|+
T Consensus 375 ~aGi~l~~k~g~~V~~g~~l~~i~~~~ 401 (434)
T PRK06078 375 AVGIVLRKKVGDSVKKGESLATIYANR 401 (434)
T ss_pred ccCeEeccCCcCEeCCCCeEEEEeCCh
Confidence 333589999999999999999987654
No 250
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=40.42 E-value=28 Score=36.90 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=20.7
Q ss_pred EEEEecCCCeeecCCeEEEEEec
Q 006995 104 AKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
++|++++|+.|++||+|++++-.
T Consensus 80 v~~~~~dG~~v~~G~~i~~v~G~ 102 (308)
T PLN02716 80 VEWAAIDGDFVHKGLKFGKVTGP 102 (308)
T ss_pred EEEEeCCCCEecCCCEEEEEEEC
Confidence 47999999999999999999853
No 251
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=40.28 E-value=27 Score=36.33 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.8
Q ss_pred EEEEecCCCeeecCCeEEEEEec
Q 006995 104 AKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
++|++++|+.|+.||+|++++-+
T Consensus 58 v~~~~~dG~~v~~g~~i~~i~G~ 80 (272)
T cd01573 58 VDLAAASGSRVAAGAVLLEAEGP 80 (272)
T ss_pred EEEEcCCCCEecCCCEEEEEEEc
Confidence 48999999999999999999864
No 252
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.23 E-value=28 Score=36.71 Aligned_cols=23 Identities=35% Similarity=0.875 Sum_probs=20.7
Q ss_pred EEEEecCCCeeecCCeEEEEEec
Q 006995 104 AKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
++|++++||.|++||+|++++-+
T Consensus 84 v~~~~~dG~~v~~G~~i~~~~G~ 106 (294)
T PRK06978 84 VTWRYREGDRMTADSTVCELEGP 106 (294)
T ss_pred EEEEcCCCCEeCCCCEEEEEEeC
Confidence 59999999999999999998753
No 253
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.19 E-value=29 Score=36.49 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=20.8
Q ss_pred EEEEecCCCeeecCCeEEEEEec
Q 006995 104 AKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
.+|++++|+.|++||+|++++-+
T Consensus 74 ~~~~~~dG~~v~~g~~i~~~~G~ 96 (288)
T PRK07428 74 FTPLVAEGAACESGQVVAEIEGP 96 (288)
T ss_pred EEEEcCCCCEecCCCEEEEEEEc
Confidence 47999999999999999999864
No 254
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=39.92 E-value=53 Score=37.83 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=41.6
Q ss_pred EecCCCeeecCCeEEEEE-ecceeeEE--ecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995 107 RKKEGDKIEIGDILCEIE-TDKATVEF--ESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (622)
Q Consensus 107 ~v~~Gd~V~~g~~l~~ve-tdK~~~~i--~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~ 165 (622)
.+++||.|..||++++|+ |.-...-| +.-..|+|+++ +.+|+ ..+.++|+.++.++
T Consensus 123 ~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i-~~~g~--ytv~~~i~~~~~~g 181 (591)
T TIGR01042 123 KLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYI-APAGN--YTVDDTVLEVEFQG 181 (591)
T ss_pred ccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEE-ccCCC--ceeeeEEEEEeeCC
Confidence 578899999999999765 44344444 44567999776 56786 48899999998633
No 255
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=39.76 E-value=28 Score=36.69 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=20.8
Q ss_pred EEEEecCCCeeecCCeEEEEEec
Q 006995 104 AKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
++|++++|+.|++||+|++++-+
T Consensus 87 v~~~~~dG~~v~~G~~i~~i~G~ 109 (296)
T PRK09016 87 IEWHVDDGDVITANQTLFELTGP 109 (296)
T ss_pred EEEEcCCCCEecCCCEEEEEEEC
Confidence 48999999999999999999854
No 256
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.36 E-value=29 Score=36.19 Aligned_cols=23 Identities=43% Similarity=0.743 Sum_probs=20.9
Q ss_pred EEEEecCCCeeecCCeEEEEEec
Q 006995 104 AKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
++|++++|+.|+.||+|++++-+
T Consensus 60 ~~~~~~dG~~v~~g~~i~~i~G~ 82 (273)
T PRK05848 60 CVFTIKDGERFKKGDILMEIEGD 82 (273)
T ss_pred EEEEcCCCCEecCCCEEEEEEEC
Confidence 49999999999999999999864
No 257
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=39.22 E-value=68 Score=36.34 Aligned_cols=70 Identities=23% Similarity=0.309 Sum_probs=49.8
Q ss_pred EecCCCCCCCceEEEEEEE----ecCCCeeecCCeEEEEEecc-e-eeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995 89 VGMPALSPTMSQGNIAKWR----KKEGDKIEIGDILCEIETDK-A-TVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (622)
Q Consensus 89 ~~~p~~g~~~~eg~i~~w~----v~~Gd~V~~g~~l~~vetdK-~-~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~ 162 (622)
+.+|.|... .+|. +++||.|..||+|..|.-.- . .+-+..+..|........+|+. .+.++|+.++
T Consensus 105 v~~p~Ldr~------~kW~F~P~~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G~y--tv~d~ia~v~ 176 (588)
T COG1155 105 LNPPALDRK------KKWDFVPAVKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGEY--TVEDVIATVS 176 (588)
T ss_pred CCCCCCCcc------cccccccccccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCCCc--eeeEEEEEEe
Confidence 556666543 2564 47999999999999876322 2 2234556577777888888975 8999999997
Q ss_pred cCCc
Q 006995 163 EDAD 166 (622)
Q Consensus 163 ~~~~ 166 (622)
.+..
T Consensus 177 ~~~g 180 (588)
T COG1155 177 TEGG 180 (588)
T ss_pred cCCC
Confidence 6655
No 258
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.16 E-value=30 Score=36.22 Aligned_cols=24 Identities=17% Similarity=0.345 Sum_probs=21.4
Q ss_pred EEEEEecCCCeeecCCeEEEEEec
Q 006995 103 IAKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 103 i~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
-++|++++|+.|+.||+|++++-.
T Consensus 71 ~~~~~~~dG~~v~~g~~i~~i~G~ 94 (281)
T PRK06106 71 EMRRHLPDGAAVAPGDVIATISGP 94 (281)
T ss_pred EEEEEeCCCCEEcCCCEEEEEEEC
Confidence 359999999999999999999853
No 259
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=38.52 E-value=31 Score=36.33 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.8
Q ss_pred EEEEecCCCeeecCCeEEEEEec
Q 006995 104 AKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
++|++++|+.|++||+|++++-+
T Consensus 78 v~~~~~dG~~v~~g~~i~~i~G~ 100 (289)
T PRK07896 78 VLDRVEDGARVPPGQALLTVTAP 100 (289)
T ss_pred EEEEcCCCCEecCCCEEEEEEEC
Confidence 48999999999999999999864
No 260
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=36.97 E-value=47 Score=38.80 Aligned_cols=28 Identities=29% Similarity=0.495 Sum_probs=24.3
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEecccc
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIETDKA 254 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~ 254 (622)
|+--+++|++||+|++||+|++++-++.
T Consensus 559 G~gF~~~v~~Gd~V~~G~~l~~~D~~~i 586 (627)
T PRK09824 559 GKFFTAHVNVGDKVNTGDLLIEFDIPAI 586 (627)
T ss_pred CCCceEEecCCCEEcCCCEEEEEcHHHH
Confidence 5666899999999999999999988653
No 261
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=36.79 E-value=31 Score=38.05 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=22.8
Q ss_pred CceEEEEEEEecCCCeeecCCeEEEEEec
Q 006995 98 MSQGNIAKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 98 ~~eg~i~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
+.-+-=+.++++.||+|++||+||.|-++
T Consensus 370 id~~aGi~l~~k~G~~V~~g~~l~~i~~~ 398 (405)
T TIGR02644 370 IDHEAGIYLHKKTGDRVKKGDPLATLYSS 398 (405)
T ss_pred CCcCCCeEEecCCcCEeCCCCeEEEEeCC
Confidence 33333358999999999999999998743
No 262
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=36.70 E-value=30 Score=35.22 Aligned_cols=48 Identities=21% Similarity=0.224 Sum_probs=35.9
Q ss_pred CCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEE
Q 006995 111 GDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAI 160 (622)
Q Consensus 111 Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~ 160 (622)
|+.|++||.+.-++-. .++.+--|.+-+--+..+++|+. |..|+.|+.
T Consensus 189 g~~v~kGee~G~F~fG-StVvllf~~~~~~~~~~v~~g~k-V~~Ge~lg~ 236 (238)
T TIGR00163 189 PVKLLKGEEMGYFELG-STVILLFEADAFQLSAHLAVGQE-VKIGELLAY 236 (238)
T ss_pred CceeccccEeeeEcCC-CeEEEEEeCCCcccChhhccCCE-EEcChhhcc
Confidence 9999999999999864 45555555332222677899999 999999864
No 263
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=36.49 E-value=37 Score=35.53 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.8
Q ss_pred EEEEecCCCeeecCCeEEEEEec
Q 006995 104 AKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
++|++++|+.|+.||+|++++-+
T Consensus 62 ~~~~~~dG~~v~~g~~i~~~~G~ 84 (277)
T TIGR01334 62 IDYAVPSGSRALAGTLLLEAKGS 84 (277)
T ss_pred EEEEeCCCCEeCCCCEEEEEEec
Confidence 49999999999999999999854
No 264
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=36.44 E-value=35 Score=35.73 Aligned_cols=23 Identities=22% Similarity=0.702 Sum_probs=20.7
Q ss_pred EEEEecCCCeeecCCeEEEEEec
Q 006995 104 AKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
++|++++|+.|+.|++|++++-+
T Consensus 60 v~~~~~dG~~v~~g~~i~~i~G~ 82 (278)
T PRK08385 60 VEVRKRDGEEVKAGEVILELKGN 82 (278)
T ss_pred EEEEcCCCCEecCCCEEEEEEEC
Confidence 48999999999999999999864
No 265
>PRK04350 thymidine phosphorylase; Provisional
Probab=36.20 E-value=30 Score=39.07 Aligned_cols=29 Identities=31% Similarity=0.409 Sum_probs=22.9
Q ss_pred CCceEEEEEEEecCCCeeecCCeEEEEEe
Q 006995 97 TMSQGNIAKWRKKEGDKIEIGDILCEIET 125 (622)
Q Consensus 97 ~~~eg~i~~w~v~~Gd~V~~g~~l~~vet 125 (622)
-+.-+-=+.++++.||+|++||+|+.|-.
T Consensus 434 p~d~~aGi~l~~k~Gd~V~~G~~l~~i~a 462 (490)
T PRK04350 434 PKDKGAGIDLHVKVGDKVKKGDPLYTIHA 462 (490)
T ss_pred CcCcccCeEEeccCCCEecCCCeEEEEec
Confidence 34444446899999999999999999874
No 266
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=35.32 E-value=1.1e+02 Score=23.20 Aligned_cols=48 Identities=23% Similarity=0.234 Sum_probs=36.1
Q ss_pred CCcceEEEEeeeechHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHhhccccc
Q 006995 430 QNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEAN 482 (622)
Q Consensus 430 ~~iP~~~~~~evdvt~l~~~rk~~k~~~g~k~t~~~~iikAva~Al~~~P~lN 482 (622)
++.++|.+..+-++-..++.+.+.+ .-|++.-|+.++..+|++...++
T Consensus 2 r~~~~f~lRlP~~l~~~lk~~A~~~-----gRS~NsEIv~~L~~~l~~e~~i~ 49 (50)
T PF03869_consen 2 RKDPQFNLRLPEELKEKLKERAEEN-----GRSMNSEIVQRLEEALKKEGRIQ 49 (50)
T ss_dssp CCSEEEEEECEHHHHHHHHHHHHHT-----TS-HHHHHHHHHHHHHHHCTSSC
T ss_pred CCCCceeeECCHHHHHHHHHHHHHh-----CCChHHHHHHHHHHHHhccccCC
Confidence 4678999988877666665555543 45999999999999999877654
No 267
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=35.14 E-value=38 Score=35.11 Aligned_cols=22 Identities=36% Similarity=0.889 Sum_probs=20.3
Q ss_pred EEEecCCCeeecCCeEEEEEec
Q 006995 105 KWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 105 ~w~v~~Gd~V~~g~~l~~vetd 126 (622)
+|++++|+.|+.||+|++++-.
T Consensus 57 ~~~~~dG~~v~~g~~i~~i~G~ 78 (265)
T TIGR00078 57 EWLVKDGDRVEPGEVVAEVEGP 78 (265)
T ss_pred EEEeCCCCEecCCCEEEEEEEc
Confidence 8999999999999999999853
No 268
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=35.06 E-value=51 Score=44.21 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=18.4
Q ss_pred EeeeCCCCeeecCCeeEEEec
Q 006995 231 KWRKNEGDKIEVGDVICEIET 251 (622)
Q Consensus 231 ~w~v~~Gd~V~~gd~l~~vet 251 (622)
.++|++|+.|++||.|++...
T Consensus 2423 ~l~v~~g~~V~~g~~la~wdp 2443 (2836)
T PRK14844 2423 KLYVDEGGSVKIGDKVAEWDP 2443 (2836)
T ss_pred EEEecCCCEecCCCEEEEEcC
Confidence 478999999999999998754
No 269
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=35.04 E-value=31 Score=29.34 Aligned_cols=23 Identities=17% Similarity=0.450 Sum_probs=15.6
Q ss_pred EEEEEecCCCeeecCCeEEEEEe
Q 006995 103 IAKWRKKEGDKIEIGDILCEIET 125 (622)
Q Consensus 103 i~~w~v~~Gd~V~~g~~l~~vet 125 (622)
+..-.|++||.|++||.|+.+..
T Consensus 52 l~~~~v~~G~~V~~G~~IG~~g~ 74 (96)
T PF01551_consen 52 LDSVSVKVGDRVKAGQVIGTVGN 74 (96)
T ss_dssp ESEESS-TTSEE-TTCEEEEEBS
T ss_pred cccccceecccccCCCEEEecCC
Confidence 33445888888888888888764
No 270
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=34.96 E-value=30 Score=39.04 Aligned_cols=29 Identities=28% Similarity=0.322 Sum_probs=22.9
Q ss_pred CCceEEEEEEEecCCCeeecCCeEEEEEe
Q 006995 97 TMSQGNIAKWRKKEGDKIEIGDILCEIET 125 (622)
Q Consensus 97 ~~~eg~i~~w~v~~Gd~V~~g~~l~~vet 125 (622)
-+.-+-=+.++++.||+|++||+|++|-.
T Consensus 443 ~id~~aGi~l~~k~Gd~V~~G~pl~~i~a 471 (500)
T TIGR03327 443 PNDKGAGVYLHVKVGEKVKKGDPLYTIYA 471 (500)
T ss_pred CcCcccCeEEeccCcCEeCCCCeEEEEEC
Confidence 34444446899999999999999999873
No 271
>PRK04350 thymidine phosphorylase; Provisional
Probab=34.28 E-value=60 Score=36.68 Aligned_cols=41 Identities=24% Similarity=0.404 Sum_probs=34.1
Q ss_pred EecccceeeEecCCCeeEEEE------------------------eccCCCeecccCCeEEEEecC
Q 006995 249 IETDKATLEFECLEEGYLAKI------------------------LAPEGSKDVAVGQPIAITVED 290 (622)
Q Consensus 249 vetdK~~~~i~s~~~G~v~~i------------------------~~~~g~~~v~vG~~l~~i~~~ 290 (622)
+..-+.+.+|.|+.+|+|..| +++-|+. |+.|++|+.|..+
T Consensus 399 ~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~-V~~G~~l~~i~a~ 463 (490)
T PRK04350 399 IPLGDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDK-VKKGDPLYTIHAE 463 (490)
T ss_pred cCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCE-ecCCCeEEEEecC
Confidence 344566788999999999887 8899999 9999999999743
No 272
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=33.96 E-value=60 Score=36.75 Aligned_cols=40 Identities=23% Similarity=0.406 Sum_probs=33.5
Q ss_pred ecccceeeEecCCCeeEEEE------------------------eccCCCeecccCCeEEEEecC
Q 006995 250 ETDKATLEFECLEEGYLAKI------------------------LAPEGSKDVAVGQPIAITVED 290 (622)
Q Consensus 250 etdK~~~~i~s~~~G~v~~i------------------------~~~~g~~~v~vG~~l~~i~~~ 290 (622)
-.-+.+.+|.|+.+|+|..| +++-|+. |+.|++|+.|..+
T Consensus 409 ~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~-V~~G~pl~~i~a~ 472 (500)
T TIGR03327 409 QVGDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEK-VKKGDPLYTIYAE 472 (500)
T ss_pred CCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCE-eCCCCeEEEEECC
Confidence 34556788899999999887 8899999 9999999999743
No 273
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=33.74 E-value=1.3e+02 Score=25.52 Aligned_cols=56 Identities=16% Similarity=0.132 Sum_probs=35.2
Q ss_pred CceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEc
Q 006995 98 MSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE 163 (622)
Q Consensus 98 ~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~ 163 (622)
+.+|+|+.+.-.+ ...-...|+...-...+... +.++.++.||. |+.|+.|+.+..
T Consensus 19 ~~~G~V~~~~~~~-----~~g~~V~i~~~~g~~~~y~~----l~~~~v~~G~~-V~~G~~IG~~g~ 74 (96)
T PF01551_consen 19 PADGKVVFVGEDP-----GYGNYVIIQHGNGYITVYGH----LDSVSVKVGDR-VKAGQVIGTVGN 74 (96)
T ss_dssp SSSEEEEEEEEET-----TTEEEEEEEETTSEEEEEEE----ESEESS-TTSE-E-TTCEEEEEBS
T ss_pred CccEEEEEEEecc-----CCccEEEEEeCCcCCEEEec----cccccceeccc-ccCCCEEEecCC
Confidence 4678898777643 33444556554433333222 56677999999 999999999864
No 274
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=32.68 E-value=38 Score=35.18 Aligned_cols=26 Identities=31% Similarity=0.694 Sum_probs=22.2
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEecc
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIETD 252 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetd 252 (622)
+--++|++++|+.|+.||+|++++-+
T Consensus 57 ~l~v~~~~~dG~~v~~g~~i~~i~G~ 82 (268)
T cd01572 57 GIEVEWLVKDGDRVEPGQVLATVEGP 82 (268)
T ss_pred CeEEEEEeCCCCEecCCCEEEEEEEC
Confidence 45578999999999999999999853
No 275
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=32.17 E-value=39 Score=35.29 Aligned_cols=23 Identities=22% Similarity=0.573 Sum_probs=20.4
Q ss_pred eEeeeCCCCeeecCCeeEEEecc
Q 006995 230 AKWRKNEGDKIEVGDVICEIETD 252 (622)
Q Consensus 230 ~~w~v~~Gd~V~~gd~l~~vetd 252 (622)
++|++++|+.|+.||+|++++-+
T Consensus 66 v~~~~~dG~~v~~g~~i~~~~G~ 88 (277)
T PRK08072 66 VELHKKDGDLVKKGEIIATVQGP 88 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEEEC
Confidence 68999999999999999999843
No 276
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=32.06 E-value=65 Score=35.87 Aligned_cols=38 Identities=26% Similarity=0.480 Sum_probs=31.9
Q ss_pred ccceeeEecCCCeeEEEE-------------------------------eccCCCeecccCCeEEEEecC
Q 006995 252 DKATLEFECLEEGYLAKI-------------------------------LAPEGSKDVAVGQPIAITVED 290 (622)
Q Consensus 252 dK~~~~i~s~~~G~v~~i-------------------------------~~~~g~~~v~vG~~l~~i~~~ 290 (622)
-+-..+|.|+.+|+|..| +++.|+. |+.|++|+.|...
T Consensus 336 a~~~~~v~A~~~G~v~~id~~~ig~~~~~lGaGr~~~~d~iD~~aGi~l~~k~Gd~-V~~Gd~l~~i~~~ 404 (437)
T TIGR02643 336 APLIKPVYADREGYVSEMDTRALGMAVVALGGGRRKADDTIDYSVGLTDLLPLGDR-VEKGEPLAVVHAA 404 (437)
T ss_pred CCeEEEEECCCCeEEEEeeHHHHHHHHHHcCccccCCCCCcCcccCeEeccCCcCE-eCCCCeEEEEECC
Confidence 455778888888888887 7889999 9999999999743
No 277
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=30.26 E-value=38 Score=37.68 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=22.5
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEeccc
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIETDK 253 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK 253 (622)
+-=+.++++.||.|++||+|++|-.++
T Consensus 375 ~aGi~l~~k~g~~V~~g~~l~~i~~~~ 401 (434)
T PRK06078 375 AVGIVLRKKVGDSVKKGESLATIYANR 401 (434)
T ss_pred ccCeEeccCCcCEeCCCCeEEEEeCCh
Confidence 445678999999999999999988665
No 278
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=29.71 E-value=46 Score=34.86 Aligned_cols=24 Identities=17% Similarity=0.480 Sum_probs=20.9
Q ss_pred eeEeeeCCCCeeecCCeeEEEecc
Q 006995 229 IAKWRKNEGDKIEVGDVICEIETD 252 (622)
Q Consensus 229 i~~w~v~~Gd~V~~gd~l~~vetd 252 (622)
-+.|++++|+.|+.||+|++++-+
T Consensus 66 ~v~~~~~dG~~v~~G~~i~~~~G~ 89 (281)
T PRK06543 66 TVTLAVADGERFEAGDILATVTGP 89 (281)
T ss_pred EEEEEeCCCCEecCCCEEEEEEec
Confidence 568999999999999999999843
No 279
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=29.71 E-value=97 Score=35.79 Aligned_cols=59 Identities=36% Similarity=0.501 Sum_probs=43.2
Q ss_pred EEEE----ecCCCeeecCCeEEEEE-ecceeeE--EecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995 104 AKWR----KKEGDKIEIGDILCEIE-TDKATVE--FESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (622)
Q Consensus 104 ~~w~----v~~Gd~V~~g~~l~~ve-tdK~~~~--i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~ 165 (622)
.+|. +++||.|..||++++|. +.-.... +..-..|+|+.+ +.+|+. .+.++++.++..+
T Consensus 113 ~~w~f~p~~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i-~~~g~~--~~~~~v~~~~~~g 178 (578)
T TIGR01043 113 KKWHFKPTVKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEI-AEEGDY--TVEDTIAVVDTDG 178 (578)
T ss_pred cccccccccccCccccCCceEEEEecccceeeeeecCCCCcceEEEe-ccCCCc--eeeeeEEEEecCC
Confidence 4564 78899999999999884 4444333 344578999777 667864 7889999997633
No 280
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=28.81 E-value=53 Score=35.46 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=21.9
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEec
Q 006995 100 QGNIAKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 100 eg~i~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
.+++ |++++|+.|..|++|++||-.
T Consensus 69 ~~~v--~~~~dG~~v~~g~~il~i~G~ 93 (343)
T PRK08662 69 PVDV--YALPEGTLFDPKEPVMRIEGP 93 (343)
T ss_pred CcEE--EEeCCCCEecCCceEEEEEEc
Confidence 4665 999999999999999999864
No 281
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=28.34 E-value=84 Score=32.60 Aligned_cols=56 Identities=21% Similarity=0.294 Sum_probs=40.2
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i 287 (622)
..|..|.. +|+.|++||.+..++-. .++.+--+. |.+ ++.++.|+. |..|+.|+.|
T Consensus 210 r~i~~~~~-~~~~v~kGee~G~F~fG-STVvllf~~-~~~-~~~v~~g~~-V~~Ge~ig~~ 265 (265)
T PRK03934 210 RFIQTYEY-ENLKLKKGEELGNFEMG-STIVLFSQK-GSL-EFNLKAGKS-VKFGESIGEI 265 (265)
T ss_pred Cceeeecc-CCceEccccEeeEEccC-CEEEEEEeC-Ccc-eEccCCCCE-EEcchhhccC
Confidence 44566654 59999999999999875 444433333 333 677899998 9999998753
No 282
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=28.03 E-value=55 Score=34.35 Aligned_cols=58 Identities=22% Similarity=0.229 Sum_probs=39.3
Q ss_pred EEEEEEecC----CCeeecCCeEEEEEecceeeEEecCCcEEE-EEEEecCCCccccCCCeEEEEE
Q 006995 102 NIAKWRKKE----GDKIEIGDILCEIETDKATVEFESLEEGFL-AKILVPEGSKDVPVGQPIAITV 162 (622)
Q Consensus 102 ~i~~w~v~~----Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i-~~~~~~~g~~~v~~G~~l~~i~ 162 (622)
.|..|.... |..|++||.+.-++=. .++.+--+.. .+ -...+.+|+. |..|+.|+.+.
T Consensus 224 ~~~~~~~~~~~~~~~~v~kGee~G~F~fG-StVvllfe~~-~~~~~~~v~~g~k-V~~Ge~ig~~~ 286 (288)
T PRK00044 224 IIKRWDYPEAGDGAITLKKGAEMGRFKLG-STVINLFPPG-KVQLAEQLQAGSV-VRMGQPLAHIT 286 (288)
T ss_pred cceeeeccccccCCCeEccccEeecccCC-CeEEEEEeCC-CceeccccCCCCE-EEcChhhcCcc
Confidence 344555432 7799999999988864 4554444433 33 1344678999 99999998764
No 283
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=27.87 E-value=51 Score=34.60 Aligned_cols=24 Identities=8% Similarity=0.116 Sum_probs=20.4
Q ss_pred eeeEeeeCCCCeeecCCeeEEEec
Q 006995 228 NIAKWRKNEGDKIEVGDVICEIET 251 (622)
Q Consensus 228 ~i~~w~v~~Gd~V~~gd~l~~vet 251 (622)
--++|++++|+.|++||+|++++-
T Consensus 61 ~~v~~~~~dG~~v~~G~~i~~~~G 84 (284)
T PRK06096 61 LTIDDAVSDGSQANAGQRLISAQG 84 (284)
T ss_pred CEEEEEeCCCCEeCCCCEEEEEEe
Confidence 346899999999999999998874
No 284
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=27.83 E-value=47 Score=37.05 Aligned_cols=25 Identities=12% Similarity=0.322 Sum_probs=20.0
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEec
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIET 251 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vet 251 (622)
+-=+.++++.||.|++||+|++|-.
T Consensus 380 ~aGi~l~~k~G~~V~~Gd~l~~i~~ 404 (440)
T PRK05820 380 SVGLTLHARLGDRVDAGEPLATLHA 404 (440)
T ss_pred CCCeEEccCCcCEECCCCeEEEEeC
Confidence 3456788889999999999998874
No 285
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=27.48 E-value=49 Score=36.48 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=22.0
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecc
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETD 252 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetd 252 (622)
.+-=+.++++.||.|++||+|+.|-++
T Consensus 372 ~~aGi~l~~k~G~~V~~g~~l~~i~~~ 398 (405)
T TIGR02644 372 HEAGIYLHKKTGDRVKKGDPLATLYSS 398 (405)
T ss_pred cCCCeEEecCCcCEeCCCCeEEEEeCC
Confidence 344567899999999999999998854
No 286
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=27.31 E-value=54 Score=34.32 Aligned_cols=23 Identities=17% Similarity=0.641 Sum_probs=20.5
Q ss_pred eEeeeCCCCeeecCCeeEEEecc
Q 006995 230 AKWRKNEGDKIEVGDVICEIETD 252 (622)
Q Consensus 230 ~~w~v~~Gd~V~~gd~l~~vetd 252 (622)
++|++++|+.|++||+|++++-+
T Consensus 68 ~~~~~~dG~~v~~g~~i~~i~G~ 90 (277)
T PRK05742 68 VHWQVADGERVSANQVLFHLEGP 90 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEEEc
Confidence 78999999999999999999853
No 287
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=26.81 E-value=54 Score=34.62 Aligned_cols=24 Identities=21% Similarity=0.545 Sum_probs=20.7
Q ss_pred eeEeeeCCCCeeecCCeeEEEecc
Q 006995 229 IAKWRKNEGDKIEVGDVICEIETD 252 (622)
Q Consensus 229 i~~w~v~~Gd~V~~gd~l~~vetd 252 (622)
-++|++++|+.|+.||+|++++-+
T Consensus 86 ~v~~~~~dG~~v~~G~~i~~i~G~ 109 (296)
T PRK09016 86 TIEWHVDDGDVITANQTLFELTGP 109 (296)
T ss_pred EEEEEcCCCCEecCCCEEEEEEEC
Confidence 368999999999999999999853
No 288
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=26.71 E-value=1.3e+02 Score=34.86 Aligned_cols=57 Identities=30% Similarity=0.431 Sum_probs=41.8
Q ss_pred EecCCCeeecCCeEEEEEec-ceeeE--EecCCcEEEEEEEecCCCccccCCCeEEEEEcCCc
Q 006995 107 RKKEGDKIEIGDILCEIETD-KATVE--FESLEEGFLAKILVPEGSKDVPVGQPIAITVEDAD 166 (622)
Q Consensus 107 ~v~~Gd~V~~g~~l~~vetd-K~~~~--i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~~ 166 (622)
.+++||.|..||+|.+|+-. -...- ++.-..|++..| +.+|+. .+.++|+.+.+...
T Consensus 123 ~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~~i-~~~G~y--tv~~~i~~~~~~~G 182 (586)
T PRK04192 123 TVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEI-VSEGDY--TVDDTIAVLEDEDG 182 (586)
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCceEEEEE-ccCCCc--eeeeEEEEEEccCC
Confidence 47889999999999998643 22333 445568999666 567764 78899999976544
No 289
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=26.20 E-value=58 Score=34.59 Aligned_cols=24 Identities=17% Similarity=0.309 Sum_probs=20.1
Q ss_pred eeeEeeeCCCCeeecCCeeEEEec
Q 006995 228 NIAKWRKNEGDKIEVGDVICEIET 251 (622)
Q Consensus 228 ~i~~w~v~~Gd~V~~gd~l~~vet 251 (622)
--++|++++|+.|++||+|++++-
T Consensus 78 ~~v~~~~~dG~~v~~G~~i~~v~G 101 (308)
T PLN02716 78 LKVEWAAIDGDFVHKGLKFGKVTG 101 (308)
T ss_pred eEEEEEeCCCCEecCCCEEEEEEE
Confidence 345799999999999999998874
No 290
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=26.20 E-value=99 Score=36.33 Aligned_cols=28 Identities=29% Similarity=0.372 Sum_probs=24.4
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEecccc
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIETDKA 254 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~ 254 (622)
|+--+.+|++||+|++||+|+++.-++.
T Consensus 579 G~gF~~~Vk~Gd~V~~G~~l~~~D~~~i 606 (648)
T PRK10255 579 GKGFKRLVEEGAQVSAGQPILEMDLDYL 606 (648)
T ss_pred CCCceEEecCCCEEcCCCEEEEEcHHHH
Confidence 5667889999999999999999988754
No 291
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.20 E-value=57 Score=34.43 Aligned_cols=23 Identities=35% Similarity=0.852 Sum_probs=20.1
Q ss_pred eeEeeeCCCCeeecCCeeEEEec
Q 006995 229 IAKWRKNEGDKIEVGDVICEIET 251 (622)
Q Consensus 229 i~~w~v~~Gd~V~~gd~l~~vet 251 (622)
-++|++++|+.|++||+|++++-
T Consensus 83 ~v~~~~~dG~~v~~G~~i~~~~G 105 (294)
T PRK06978 83 EVTWRYREGDRMTADSTVCELEG 105 (294)
T ss_pred EEEEEcCCCCEeCCCCEEEEEEe
Confidence 46899999999999999998874
No 292
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=26.08 E-value=57 Score=34.00 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=20.5
Q ss_pred eeeEeeeCCCCeeecCCeeEEEecc
Q 006995 228 NIAKWRKNEGDKIEVGDVICEIETD 252 (622)
Q Consensus 228 ~i~~w~v~~Gd~V~~gd~l~~vetd 252 (622)
--++|++++|+.|+.||+|++++-+
T Consensus 56 ~~v~~~~~dG~~v~~g~~i~~i~G~ 80 (272)
T cd01573 56 LEVDLAAASGSRVAAGAVLLEAEGP 80 (272)
T ss_pred cEEEEEcCCCCEecCCCEEEEEEEc
Confidence 4567899999999999999988853
No 293
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=25.97 E-value=1e+02 Score=31.88 Aligned_cols=45 Identities=13% Similarity=0.159 Sum_probs=30.8
Q ss_pred ecCCCeeec-CCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEE
Q 006995 108 KKEGDKIEI-GDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAI 160 (622)
Q Consensus 108 v~~Gd~V~~-g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~ 160 (622)
++.|+.|.+ |++|++. . .-+|.+|++|++ ++-.... +.+|+..+.
T Consensus 226 ~~~~~~~~~~G~~la~~-~---~~~~~ap~~g~v---l~~p~~~-~~~G~~~~~ 271 (272)
T cd06910 226 FRGGETIPRAGTVIAHD-G---GEPIRTPYDDCV---LIMPSLR-PLRGQTAVR 271 (272)
T ss_pred cCCcceeccCCcEEEEe-C---CeEEeCCCCCEE---EEccCCC-CCCCceeee
Confidence 455788888 8888883 2 378888888865 3445555 667776654
No 294
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=25.92 E-value=59 Score=34.20 Aligned_cols=24 Identities=33% Similarity=0.303 Sum_probs=20.7
Q ss_pred eeEeeeCCCCeeecCCeeEEEecc
Q 006995 229 IAKWRKNEGDKIEVGDVICEIETD 252 (622)
Q Consensus 229 i~~w~v~~Gd~V~~gd~l~~vetd 252 (622)
-.+|++++|+.|++||+|++++-+
T Consensus 73 ~~~~~~~dG~~v~~g~~i~~~~G~ 96 (288)
T PRK07428 73 SFTPLVAEGAACESGQVVAEIEGP 96 (288)
T ss_pred EEEEEcCCCCEecCCCEEEEEEEc
Confidence 457999999999999999999853
No 295
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=25.91 E-value=66 Score=33.87 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.2
Q ss_pred EEEEEe--cCCCeeecCCeEEEEEec
Q 006995 103 IAKWRK--KEGDKIEIGDILCEIETD 126 (622)
Q Consensus 103 i~~w~v--~~Gd~V~~g~~l~~vetd 126 (622)
..+|++ ++|+.|++||+|++++-+
T Consensus 72 ~~~~~~~~~dG~~v~~G~~i~~v~G~ 97 (290)
T PRK06559 72 TFQNPHQFKDGDRLTSGDLVLEIIGS 97 (290)
T ss_pred EEEEeecCCCCCEecCCCEEEEEEEC
Confidence 458998 999999999999999864
No 296
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=25.81 E-value=59 Score=33.74 Aligned_cols=26 Identities=35% Similarity=0.740 Sum_probs=21.4
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEecc
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIETD 252 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetd 252 (622)
+--+.|++++|+.|+.|++|++++-+
T Consensus 56 ~~~v~~~~~dG~~v~~g~~i~~i~G~ 81 (269)
T cd01568 56 GIEVEWLVKDGDRVEAGQVLLEVEGP 81 (269)
T ss_pred CeEEEEEeCCCCEecCCCEEEEEEEc
Confidence 34467999999999999999999853
No 297
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=25.37 E-value=61 Score=33.98 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=20.9
Q ss_pred eeeEeeeCCCCeeecCCeeEEEec
Q 006995 228 NIAKWRKNEGDKIEVGDVICEIET 251 (622)
Q Consensus 228 ~i~~w~v~~Gd~V~~gd~l~~vet 251 (622)
--++|++++|+.|+.||+|++++-
T Consensus 70 ~~~~~~~~dG~~v~~g~~i~~i~G 93 (281)
T PRK06106 70 IEMRRHLPDGAAVAPGDVIATISG 93 (281)
T ss_pred eEEEEEeCCCCEEcCCCEEEEEEE
Confidence 457899999999999999999884
No 298
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=25.05 E-value=61 Score=33.82 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=19.7
Q ss_pred eeEeeeCCCCeeecCCeeEEEec
Q 006995 229 IAKWRKNEGDKIEVGDVICEIET 251 (622)
Q Consensus 229 i~~w~v~~Gd~V~~gd~l~~vet 251 (622)
-+.|++++|+.|+.||+|++++-
T Consensus 59 ~~~~~~~dG~~v~~g~~i~~i~G 81 (273)
T PRK05848 59 ECVFTIKDGERFKKGDILMEIEG 81 (273)
T ss_pred EEEEEcCCCCEecCCCEEEEEEE
Confidence 36899999999999999998884
No 299
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.48 E-value=64 Score=33.98 Aligned_cols=24 Identities=13% Similarity=0.255 Sum_probs=20.1
Q ss_pred eeEeeeCCCCeeecCCeeEEEecc
Q 006995 229 IAKWRKNEGDKIEVGDVICEIETD 252 (622)
Q Consensus 229 i~~w~v~~Gd~V~~gd~l~~vetd 252 (622)
-++|++++|+.|++||+|++++-+
T Consensus 77 ~v~~~~~dG~~v~~g~~i~~i~G~ 100 (289)
T PRK07896 77 EVLDRVEDGARVPPGQALLTVTAP 100 (289)
T ss_pred EEEEEcCCCCEecCCCEEEEEEEC
Confidence 467899999999999999988853
No 300
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=24.45 E-value=81 Score=40.12 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=30.3
Q ss_pred EEecCCCeeecCCeEEEEEe--------cceeeEEecCCcEEE
Q 006995 106 WRKKEGDKIEIGDILCEIET--------DKATVEFESLEEGFL 140 (622)
Q Consensus 106 w~v~~Gd~V~~g~~l~~vet--------dK~~~~i~s~~~G~i 140 (622)
.+|+.||.|++||+|||+.. +|+...|.|..+|.|
T Consensus 406 l~v~~g~~V~~~q~iae~~~~~~~~~~~e~~~~~i~s~~~G~v 448 (1364)
T CHL00117 406 LLVQNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEM 448 (1364)
T ss_pred EEEeCcCEEcCCCEEEEECCCCcccccccccceeEEEcCCcEE
Confidence 68999999999999999974 456678999999985
No 301
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=24.39 E-value=95 Score=34.00 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=33.7
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEE-------eccCCCeecccCCeEE
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKI-------LAPEGSKDVAVGQPIA 285 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i-------~~~~g~~~v~vG~~l~ 285 (622)
+|+-+.+.+.|.... +...++.--+|-|..+|+|.++ +|++||. |+.||+|.
T Consensus 167 ~GT~l~I~v~E~~~p-------~~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~-VkkGdvLI 225 (385)
T PF06898_consen 167 KGTRLIIEVVEKVDP-------EEIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVGDT-VKKGDVLI 225 (385)
T ss_pred EeeEEEEEEEEcCCC-------CcccCCCCcceEECCCCEEEEEEecCCeEEecCCCE-ECCCCEEE
Confidence 466666666554432 2222334456888899999998 4566777 88888875
No 302
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=24.31 E-value=45 Score=33.75 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=25.6
Q ss_pred EEEecCCCeeecCCeEEEEEecceeeE
Q 006995 105 KWRKKEGDKIEIGDILCEIETDKATVE 131 (622)
Q Consensus 105 ~w~v~~Gd~V~~g~~l~~vetdK~~~~ 131 (622)
.|+|.+|.-+++-|..|.||.||.+++
T Consensus 181 sklvpvGygikKlqi~~vveddkvs~D 207 (231)
T KOG1668|consen 181 SKLVPVGYGIKKLQIQCVVEDDKVSID 207 (231)
T ss_pred ccccccccceeeEEEEEEEEcCccccc
Confidence 599999999999999999999999877
No 303
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=24.16 E-value=78 Score=32.72 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=39.0
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEE
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAI 286 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~ 286 (622)
|.|. ...+|+.|++||.+..++-. .++.+--|.+-.--...+.+|+. |..|+.|+.
T Consensus 202 g~I~--~~~~g~~v~kGee~G~F~fG-Stvvllf~~~~~~~~~~~~~g~~-V~~Ge~ig~ 257 (259)
T PRK03140 202 NSIE--LTHERDTVQKGEEMAYFSFG-STVVLLFEKDMIEPDQELKSGQE-VRLGEKIGT 257 (259)
T ss_pred eEEE--EecCCCEEecCcEeeeeccC-CeEEEEEeCCccccchhhcCCCE-EEcChhhcc
Confidence 4454 24679999999999999887 55554444332222456788988 999998865
No 304
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=23.92 E-value=1.4e+02 Score=34.43 Aligned_cols=54 Identities=20% Similarity=0.257 Sum_probs=40.2
Q ss_pred eeCCCCeeecCCeeEEEe-cccceee--EecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995 233 RKNEGDKIEVGDVICEIE-TDKATLE--FECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (622)
Q Consensus 233 ~v~~Gd~V~~gd~l~~ve-tdK~~~~--i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~ 289 (622)
.+++||.|..||++.+|. |.-..-- ++....|+|..| +++|+ ..+.++|+.+..
T Consensus 123 ~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i-~~~g~--ytv~~~i~~~~~ 179 (591)
T TIGR01042 123 KLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYI-APAGN--YTVDDTVLEVEF 179 (591)
T ss_pred ccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEE-ccCCC--ceeeeEEEEEee
Confidence 578899999999999765 3322222 445568999877 67786 678899999875
No 305
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=23.87 E-value=1.5e+02 Score=32.19 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=37.9
Q ss_pred eeCCCCeeecCCeeEEEeccc-ceeeE--ecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995 233 RKNEGDKIEVGDVICEIETDK-ATLEF--ECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (622)
Q Consensus 233 ~v~~Gd~V~~gd~l~~vetdK-~~~~i--~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~ 289 (622)
.+++||.|..||++..|.-.. .+-.| +....|+|..| +.+|+ ..+-+.++.+..
T Consensus 54 ~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~~-~~~g~--~~~~~~~~~~~~ 110 (369)
T cd01134 54 LVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYI-APAGD--YTVDDVILEVEF 110 (369)
T ss_pred ccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEEE-ecCCC--eeEEEEEEEEEe
Confidence 358999999999999886332 33334 44458999775 56775 456677777764
No 306
>TIGR02388 rpoC2_cyan DNA-directed RNA polymerase, beta'' subunit. The family consists of the product of the rpoC2 gene, a subunit of DNA-directed RNA polymerase of cyanobacteria and chloroplasts. RpoC2 corresponds largely to the C-terminal region of the RpoC (the beta' subunit) of other bacteria. Members of this family are designated beta'' in chloroplasts/plastids, and beta' (confusingly) in Cyanobacteria, where RpoC1 is called beta' in chloroplasts/plastids and gamma in Cyanobacteria. We prefer to name this family beta'', after its organellar members, to emphasize that this RpoC1 and RpoC2 together replace RpoC in other bacteria.
Probab=23.57 E-value=1.6e+02 Score=37.14 Aligned_cols=35 Identities=29% Similarity=0.418 Sum_probs=29.7
Q ss_pred EEecCCCeeecCCeEEEEEe-------cceeeEEecCCcEEE
Q 006995 106 WRKKEGDKIEIGDILCEIET-------DKATVEFESLEEGFL 140 (622)
Q Consensus 106 w~v~~Gd~V~~g~~l~~vet-------dK~~~~i~s~~~G~i 140 (622)
.+|+.|+.|+.+|+|+|+-+ +|+.-+|.|..+|-|
T Consensus 405 l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~k~i~s~~~Ge~ 446 (1227)
T TIGR02388 405 LFVEDGQTVDAGQLLAEIALGAVRKSTEKATKDVASDLAGEV 446 (1227)
T ss_pred EEEECCCEEecCcEEEEeccCCcccceeEEEEEEecCCCceE
Confidence 58999999999999999985 466677888888866
No 307
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=23.09 E-value=1.2e+02 Score=33.41 Aligned_cols=42 Identities=29% Similarity=0.432 Sum_probs=33.9
Q ss_pred EEecccceeeEecCCCeeEEEE-------------------------------eccCCCeecccCCeEEEEecC
Q 006995 248 EIETDKATLEFECLEEGYLAKI-------------------------------LAPEGSKDVAVGQPIAITVED 290 (622)
Q Consensus 248 ~vetdK~~~~i~s~~~G~v~~i-------------------------------~~~~g~~~v~vG~~l~~i~~~ 290 (622)
.+..-+-..+|.|..+|+|..+ +.+.|+. |+.|++|+.|..+
T Consensus 329 ~l~~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGAgR~~k~d~iD~~aGi~l~kk~ge~-Vk~Gd~l~tiya~ 401 (435)
T COG0213 329 YLPVAKYTAEVKAQTSGYVSEIDARAIGMAAMELGAGRATKTDRIDKGAGIYLHKKLGEK-VKKGDPLATIYAE 401 (435)
T ss_pred hcccCceEEEEeccCceeEEeechHHHHHHHHHhCCCCCCcccccCcccceEEEecCCCe-eccCCeEEEEecC
Confidence 3445566778888888888877 7788999 9999999999863
No 308
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.90 E-value=71 Score=33.42 Aligned_cols=25 Identities=28% Similarity=0.589 Sum_probs=20.3
Q ss_pred eeeEeeeCCCCeeecCCeeEEEecc
Q 006995 228 NIAKWRKNEGDKIEVGDVICEIETD 252 (622)
Q Consensus 228 ~i~~w~v~~Gd~V~~gd~l~~vetd 252 (622)
--+.|++++|+.|+.|++|++++-+
T Consensus 58 ~~v~~~~~dG~~v~~g~~i~~i~G~ 82 (278)
T PRK08385 58 VKVEVRKRDGEEVKAGEVILELKGN 82 (278)
T ss_pred CEEEEEcCCCCEecCCCEEEEEEEC
Confidence 4567889999999999999888743
No 309
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=22.89 E-value=74 Score=33.27 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=20.9
Q ss_pred eeeEeeeCCCCeeecCCeeEEEecc
Q 006995 228 NIAKWRKNEGDKIEVGDVICEIETD 252 (622)
Q Consensus 228 ~i~~w~v~~Gd~V~~gd~l~~vetd 252 (622)
--++|+++.|+.|+.||+|++++-+
T Consensus 60 ~~~~~~~~dG~~v~~g~~i~~~~G~ 84 (277)
T TIGR01334 60 ASIDYAVPSGSRALAGTLLLEAKGS 84 (277)
T ss_pred CEEEEEeCCCCEeCCCCEEEEEEec
Confidence 4568999999999999999998843
No 310
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=22.86 E-value=73 Score=33.05 Aligned_cols=22 Identities=36% Similarity=0.901 Sum_probs=19.2
Q ss_pred eEeeeCCCCeeecCCeeEEEec
Q 006995 230 AKWRKNEGDKIEVGDVICEIET 251 (622)
Q Consensus 230 ~~w~v~~Gd~V~~gd~l~~vet 251 (622)
+.|++++|+.|+.||+|++++-
T Consensus 56 v~~~~~dG~~v~~g~~i~~i~G 77 (265)
T TIGR00078 56 VEWLVKDGDRVEPGEVVAEVEG 77 (265)
T ss_pred EEEEeCCCCEecCCCEEEEEEE
Confidence 4799999999999999998884
No 311
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=22.64 E-value=1.7e+02 Score=33.25 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=40.2
Q ss_pred eCCCCeeecCCeeEEEeccc-c-eeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCC
Q 006995 234 KNEGDKIEVGDVICEIETDK-A-TLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP 291 (622)
Q Consensus 234 v~~Gd~V~~gd~l~~vetdK-~-~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~ 291 (622)
+++||.|..||+|..|.--- . ..-++.+..|.+..+.+.+|+ ..+-++|+.+..+.
T Consensus 122 ~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G~--ytv~d~ia~v~~~~ 179 (588)
T COG1155 122 VKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGE--YTVEDVIATVSTEG 179 (588)
T ss_pred cccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCCC--ceeeEEEEEEecCC
Confidence 37999999999999775332 2 122455557777788788896 67888999886543
No 312
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=21.93 E-value=97 Score=33.60 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=20.4
Q ss_pred EEEEEecCCCeeecCCeEEEEEec
Q 006995 103 IAKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 103 i~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
+..|.+++|+.|..|++|++||-.
T Consensus 72 ~~i~a~~eG~~v~~gepvl~i~G~ 95 (352)
T PRK07188 72 LKIRYLKDGDIINPFETVLEIEGP 95 (352)
T ss_pred eEEEEcCCCCEecCCCEEEEEEEc
Confidence 567899999999999999998864
No 313
>PHA01513 mnt Mnt
Probab=21.73 E-value=1.3e+02 Score=25.59 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=34.9
Q ss_pred CCcceEEEEeeeechHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHhhc
Q 006995 430 QNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNV 478 (622)
Q Consensus 430 ~~iP~~~~~~evdvt~l~~~rk~~k~~~g~k~t~~~~iikAva~Al~~~ 478 (622)
+..|+|++..+-++-.-++.+.+.+ +.|++..+++.+..+|.+-
T Consensus 3 r~~~qf~LRLP~eLk~rL~~aA~~n-----GRSmNaeIv~~Le~al~~~ 46 (82)
T PHA01513 3 RDDPQFNLRLPYELKEKLKQRAKAN-----GRSLNAELVQIVQDALSKP 46 (82)
T ss_pred CCCcceeeeCCHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHhcCC
Confidence 5788999988877766666666553 6799999999999999753
No 314
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=21.64 E-value=2e+02 Score=35.71 Aligned_cols=70 Identities=31% Similarity=0.419 Sum_probs=50.0
Q ss_pred EEecCCCCCCCceEEEEEEE----ecCCCeeecCCeEEEEE-ecceeeEE--ecCCcEEEEEEEecCCCccccCCCeEEE
Q 006995 88 VVGMPALSPTMSQGNIAKWR----KKEGDKIEIGDILCEIE-TDKATVEF--ESLEEGFLAKILVPEGSKDVPVGQPIAI 160 (622)
Q Consensus 88 ~~~~p~~g~~~~eg~i~~w~----v~~Gd~V~~g~~l~~ve-tdK~~~~i--~s~~~G~i~~~~~~~g~~~v~~G~~l~~ 160 (622)
=+.+|.|... .+|. +++||+|..||++.+|. +.-.+.-| +....|+|+.| +.+|+ ..+-++++.
T Consensus 106 g~~~~~l~~~------~~w~f~p~~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~~~-~~~g~--~~~~~~~~~ 176 (1017)
T PRK14698 106 GISAPALPRD------KKWHFIPKVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEI-ADEGE--YTIEEVIAK 176 (1017)
T ss_pred CCCCCCCCCC------CeeeeEeeeecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEEEE-cCCCC--cceeeEEEE
Confidence 3566777665 2564 67799999999999886 33334444 55568999776 66786 478999999
Q ss_pred EEcCCc
Q 006995 161 TVEDAD 166 (622)
Q Consensus 161 i~~~~~ 166 (622)
++....
T Consensus 177 ~~~~~g 182 (1017)
T PRK14698 177 VKTPSG 182 (1017)
T ss_pred EEcCCC
Confidence 986433
No 315
>COG4908 Uncharacterized protein containing a NRPS condensation (elongation) domain [General function prediction only]
Probab=20.29 E-value=2.8e+02 Score=30.69 Aligned_cols=64 Identities=19% Similarity=0.273 Sum_probs=44.6
Q ss_pred CccHHHHHHHHHH--HHHhh--ccccceeecCCCCeEEEcCCccEEEEEecC-------------CCeEEeeeccCCCCC
Q 006995 460 KVSVNDIVIKAVA--VALKN--VPEANAYWDVEKGEIVLCDAIDISIAVATE-------------KGLMTPIVRNADQKS 522 (622)
Q Consensus 460 k~t~~~~iikAva--~Al~~--~P~lN~~~~~~~~~i~~~~~vnigiAV~~~-------------~GL~~pvI~~a~~~s 522 (622)
+.|++++++.|+. +.+.+ |+. .++++.|+++||.- .+..+.+|+..+.-+
T Consensus 238 gaTiNDiilaa~~~fr~~y~~~~~k-------------~~~~lsi~~~VDlRkyl~sk~~sI~Nls~~~~i~I~~dd~~~ 304 (439)
T COG4908 238 GATINDIILAALLKFRLLYNTTHEK-------------ANNYLSIDMPVDLRKYLPSKEESISNLSSYLTIVINVDDVTD 304 (439)
T ss_pred CCcHHHHHHHHHHHHHHHHhhhchh-------------hcCeeeeceeeehhhhccccccceeccceeEEEEEecccccc
Confidence 6799999999994 33332 232 23455666666521 246788999999999
Q ss_pred HHHHHHHHHHHHHH
Q 006995 523 ISAISMEVKELAEK 536 (622)
Q Consensus 523 l~eia~~~~~l~~~ 536 (622)
+....+.+++....
T Consensus 305 fe~t~~~vk~~~~~ 318 (439)
T COG4908 305 FEKTLEKVKGIMNP 318 (439)
T ss_pred HHHHHHHHHhhcCc
Confidence 99999888776553
Done!